Query 001277
Match_columns 1109
No_of_seqs 874 out of 6214
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 20:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7E-130 2E-134 1264.6 90.8 980 1-1053 1-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-56 3.6E-61 548.3 28.1 640 188-874 161-849 (889)
3 PLN03194 putative disease resi 100.0 1.4E-39 2.9E-44 315.1 16.1 156 6-177 19-177 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 3.4E-35 7.3E-40 327.8 14.8 269 190-464 1-283 (287)
5 PLN00113 leucine-rich repeat r 99.9 8.9E-26 1.9E-30 294.4 21.7 317 548-866 139-487 (968)
6 PLN00113 leucine-rich repeat r 99.9 1.5E-25 3.2E-30 292.3 21.0 341 529-871 239-588 (968)
7 KOG0444 Cytoskeletal regulator 99.9 1.6E-26 3.6E-31 254.1 -4.3 324 545-873 51-381 (1255)
8 KOG4194 Membrane glycoprotein 99.9 1.3E-24 2.9E-29 238.5 6.1 388 529-935 81-488 (873)
9 KOG0444 Cytoskeletal regulator 99.9 2.4E-25 5.1E-30 245.1 -2.1 279 544-850 98-379 (1255)
10 PLN03210 Resistant to P. syrin 99.9 8.1E-22 1.8E-26 257.0 22.9 287 528-850 613-910 (1153)
11 KOG4194 Membrane glycoprotein 99.8 5.4E-22 1.2E-26 218.2 4.9 319 550-871 79-408 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 1.9E-22 4.2E-27 212.8 -7.3 198 545-750 110-308 (565)
13 KOG0472 Leucine-rich repeat pr 99.8 3.5E-22 7.6E-27 210.9 -11.3 262 551-845 47-309 (565)
14 PF01582 TIR: TIR domain; Int 99.8 1E-19 2.3E-24 178.5 2.6 132 16-147 1-140 (141)
15 smart00255 TIR Toll - interleu 99.8 3.3E-18 7.1E-23 168.5 11.7 135 13-150 1-138 (140)
16 KOG0618 Serine/threonine phosp 99.7 4E-20 8.7E-25 214.7 -5.7 329 528-867 47-489 (1081)
17 PRK15387 E3 ubiquitin-protein 99.7 1E-16 2.2E-21 193.7 17.5 259 529-850 204-462 (788)
18 PRK15370 E3 ubiquitin-protein 99.7 8.5E-17 1.8E-21 196.0 13.6 244 551-845 180-427 (754)
19 PRK15387 E3 ubiquitin-protein 99.6 2E-15 4.3E-20 182.7 17.7 240 529-829 225-465 (788)
20 PRK15370 E3 ubiquitin-protein 99.6 1E-15 2.3E-20 186.5 15.2 228 574-851 178-405 (754)
21 KOG0618 Serine/threonine phosp 99.6 1.3E-17 2.8E-22 194.2 -2.7 284 529-820 191-486 (1081)
22 KOG0617 Ras suppressor protein 99.5 2E-16 4.4E-21 148.8 -5.4 160 538-701 22-182 (264)
23 KOG0617 Ras suppressor protein 99.5 7.2E-16 1.6E-20 145.1 -4.2 99 648-748 36-136 (264)
24 cd00116 LRR_RI Leucine-rich re 99.5 2.1E-15 4.6E-20 171.2 -2.3 257 570-844 19-318 (319)
25 PF13676 TIR_2: TIR domain; PD 99.5 3.1E-14 6.8E-19 131.4 3.8 87 16-108 1-87 (102)
26 cd00116 LRR_RI Leucine-rich re 99.4 9.2E-15 2E-19 166.0 -1.2 249 579-845 3-290 (319)
27 PRK04841 transcriptional regul 99.4 1.2E-11 2.7E-16 160.9 26.1 300 180-502 9-335 (903)
28 KOG4237 Extracellular matrix p 99.3 1.7E-13 3.8E-18 145.8 -3.6 70 781-851 270-340 (498)
29 KOG4237 Extracellular matrix p 99.3 1.2E-13 2.7E-18 146.9 -5.5 140 538-679 57-199 (498)
30 KOG4658 Apoptotic ATPase [Sign 99.2 7.1E-12 1.5E-16 155.6 5.1 287 545-873 567-866 (889)
31 PRK00411 cdc6 cell division co 99.1 1.9E-09 4.2E-14 125.9 20.8 251 182-444 27-308 (394)
32 COG3899 Predicted ATPase [Gene 99.1 9.8E-10 2.1E-14 137.4 16.9 310 187-501 2-388 (849)
33 PF01637 Arch_ATPase: Archaeal 99.1 3.1E-10 6.7E-15 122.4 10.8 199 187-391 1-233 (234)
34 TIGR00635 ruvB Holliday juncti 99.1 1.2E-09 2.6E-14 122.7 15.9 268 185-481 4-290 (305)
35 PRK00080 ruvB Holliday junctio 99.1 9.7E-10 2.1E-14 124.3 14.4 261 181-481 21-311 (328)
36 TIGR02928 orc1/cdc6 family rep 99.0 1.8E-08 3.9E-13 116.6 22.4 251 182-443 12-299 (365)
37 COG2909 MalT ATP-dependent tra 99.0 8.7E-09 1.9E-13 121.5 19.2 299 180-503 14-342 (894)
38 COG4886 Leucine-rich repeat (L 99.0 4E-10 8.7E-15 131.8 7.4 197 625-850 97-294 (394)
39 TIGR03015 pepcterm_ATPase puta 99.0 2E-08 4.3E-13 110.8 18.5 180 208-396 43-242 (269)
40 KOG3207 Beta-tubulin folding c 99.0 8.3E-11 1.8E-15 127.5 -0.6 64 781-844 267-337 (505)
41 PF05729 NACHT: NACHT domain 99.0 4.1E-09 9E-14 106.9 11.9 145 209-361 1-163 (166)
42 KOG3207 Beta-tubulin folding c 98.9 1.9E-10 4.1E-15 124.7 1.4 214 593-823 117-339 (505)
43 KOG0532 Leucine-rich repeat (L 98.9 3.7E-11 7.9E-16 133.9 -4.8 207 608-844 60-271 (722)
44 KOG0532 Leucine-rich repeat (L 98.9 8.4E-11 1.8E-15 131.1 -3.2 203 632-864 60-270 (722)
45 KOG1909 Ran GTPase-activating 98.9 1.1E-10 2.4E-15 123.4 -3.6 200 617-845 88-310 (382)
46 KOG1259 Nischarin, modulator o 98.9 4.3E-10 9.4E-15 115.6 0.4 130 689-846 281-412 (490)
47 COG4886 Leucine-rich repeat (L 98.8 4E-09 8.7E-14 123.4 7.6 188 617-833 112-300 (394)
48 COG3903 Predicted ATPase [Gene 98.8 8.3E-09 1.8E-13 112.9 6.9 279 207-499 13-314 (414)
49 COG2256 MGS1 ATPase related to 98.7 4.4E-08 9.5E-13 106.4 10.4 241 181-455 20-287 (436)
50 PRK06893 DNA replication initi 98.7 5.6E-07 1.2E-11 96.0 16.7 150 208-392 39-203 (229)
51 KOG1259 Nischarin, modulator o 98.6 9.1E-09 2E-13 106.1 0.8 126 712-865 280-410 (490)
52 PF14580 LRR_9: Leucine-rich r 98.6 3.1E-08 6.8E-13 99.2 4.6 61 783-845 62-125 (175)
53 KOG3678 SARM protein (with ste 98.6 1.3E-07 2.9E-12 102.5 9.3 93 10-107 609-709 (832)
54 PF14580 LRR_9: Leucine-rich r 98.6 1.8E-08 3.8E-13 101.0 2.3 127 689-841 16-148 (175)
55 PRK15386 type III secretion pr 98.6 2E-07 4.3E-12 104.3 9.8 73 644-727 51-123 (426)
56 PTZ00112 origin recognition co 98.6 3.2E-06 6.8E-11 100.9 20.0 252 180-442 750-1030(1164)
57 PRK13342 recombination factor 98.6 3.7E-06 8.1E-11 98.1 20.6 179 181-393 8-197 (413)
58 TIGR03420 DnaA_homol_Hda DnaA 98.5 2.9E-06 6.2E-11 90.9 16.0 173 184-393 14-202 (226)
59 PRK12402 replication factor C 98.5 2E-06 4.3E-11 98.4 15.6 202 181-390 11-224 (337)
60 PRK15386 type III secretion pr 98.5 4.3E-07 9.4E-12 101.6 9.7 161 664-867 48-213 (426)
61 PF05496 RuvB_N: Holliday junc 98.5 2.8E-06 6E-11 86.9 13.9 179 180-392 19-221 (233)
62 PRK14961 DNA polymerase III su 98.4 7.6E-06 1.6E-10 93.7 18.9 194 181-389 12-217 (363)
63 KOG2120 SCF ubiquitin ligase, 98.4 2.5E-09 5.3E-14 110.4 -8.7 105 646-750 186-297 (419)
64 PRK07003 DNA polymerase III su 98.4 6.9E-06 1.5E-10 97.9 18.5 194 181-391 12-220 (830)
65 PRK14960 DNA polymerase III su 98.4 9.7E-06 2.1E-10 95.7 19.5 194 181-389 11-216 (702)
66 PRK07471 DNA polymerase III su 98.4 1.3E-05 2.8E-10 91.0 19.7 202 180-393 14-239 (365)
67 PRK14963 DNA polymerase III su 98.4 4.4E-06 9.5E-11 98.7 15.6 193 181-389 10-214 (504)
68 PTZ00202 tuzin; Provisional 98.4 1.9E-05 4.1E-10 87.8 18.9 198 149-361 216-434 (550)
69 PRK04195 replication factor C 98.4 6.7E-06 1.5E-10 98.0 16.8 181 181-390 10-200 (482)
70 TIGR01242 26Sp45 26S proteasom 98.4 2.9E-06 6.4E-11 97.5 13.0 174 183-386 120-328 (364)
71 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.5E-11 84.4 8.1 120 209-352 3-126 (128)
72 PLN03025 replication factor C 98.3 1.2E-05 2.6E-10 90.7 16.9 184 181-388 9-196 (319)
73 PF13191 AAA_16: AAA ATPase do 98.3 1.6E-06 3.5E-11 89.6 8.6 50 186-235 1-51 (185)
74 PRK00440 rfc replication facto 98.3 2.1E-05 4.7E-10 89.1 18.5 185 181-389 13-200 (319)
75 PRK14956 DNA polymerase III su 98.3 1.1E-05 2.4E-10 92.9 15.7 197 181-387 14-217 (484)
76 KOG4341 F-box protein containi 98.3 1.9E-08 4.1E-13 109.0 -6.3 262 546-848 161-441 (483)
77 KOG1909 Ran GTPase-activating 98.3 6.6E-08 1.4E-12 102.8 -2.4 64 781-844 181-252 (382)
78 PRK12323 DNA polymerase III su 98.3 7.3E-06 1.6E-10 96.5 14.0 196 181-390 12-223 (700)
79 PRK08727 hypothetical protein; 98.3 2.3E-05 5.1E-10 83.8 16.7 168 184-388 18-200 (233)
80 PLN03150 hypothetical protein; 98.3 1.4E-06 3E-11 106.9 8.1 105 623-727 420-526 (623)
81 PRK14949 DNA polymerase III su 98.3 1.7E-05 3.7E-10 96.6 17.1 198 181-390 12-218 (944)
82 PRK08691 DNA polymerase III su 98.3 6.6E-06 1.4E-10 98.1 13.2 191 181-389 12-217 (709)
83 PLN03150 hypothetical protein; 98.3 1.6E-06 3.4E-11 106.4 8.0 105 647-751 420-527 (623)
84 PRK14962 DNA polymerase III su 98.2 6.8E-05 1.5E-09 88.0 20.8 198 181-394 10-221 (472)
85 PRK08903 DnaA regulatory inact 98.2 2.2E-05 4.8E-10 84.0 14.7 176 183-396 16-203 (227)
86 PRK05564 DNA polymerase III su 98.2 2.3E-05 5E-10 88.1 15.4 178 185-392 4-190 (313)
87 PRK14957 DNA polymerase III su 98.2 2.6E-05 5.6E-10 92.3 16.1 195 181-387 12-215 (546)
88 PRK13341 recombination factor 98.2 7.3E-05 1.6E-09 91.8 20.3 173 181-387 24-212 (725)
89 KOG2028 ATPase related to the 98.2 5.5E-06 1.2E-10 88.3 9.0 153 180-360 133-293 (554)
90 PRK07940 DNA polymerase III su 98.2 3.1E-05 6.8E-10 88.6 15.8 187 184-392 4-213 (394)
91 cd00009 AAA The AAA+ (ATPases 98.2 1.3E-05 2.8E-10 79.1 11.3 123 188-330 1-131 (151)
92 PF13401 AAA_22: AAA domain; P 98.2 9.4E-06 2E-10 78.6 9.7 114 208-328 4-125 (131)
93 KOG2120 SCF ubiquitin ligase, 98.2 6.2E-08 1.3E-12 100.2 -6.0 157 575-752 186-351 (419)
94 PRK09112 DNA polymerase III su 98.2 1.8E-05 3.9E-10 89.3 13.1 199 180-393 18-241 (351)
95 PRK06645 DNA polymerase III su 98.1 4.7E-05 1E-09 89.6 16.8 189 181-388 17-225 (507)
96 TIGR02397 dnaX_nterm DNA polym 98.1 6.1E-05 1.3E-09 86.8 17.7 185 181-392 10-218 (355)
97 COG1474 CDC6 Cdc6-related prot 98.1 4.9E-05 1.1E-09 86.1 16.3 256 181-450 13-297 (366)
98 PRK07994 DNA polymerase III su 98.1 2.4E-05 5.2E-10 94.0 14.4 196 181-390 12-218 (647)
99 PRK14087 dnaA chromosomal repl 98.1 0.00011 2.5E-09 86.0 19.3 166 208-393 141-320 (450)
100 PRK05642 DNA replication initi 98.1 7.5E-05 1.6E-09 79.9 16.3 149 208-391 45-207 (234)
101 KOG2982 Uncharacterized conser 98.1 7.1E-07 1.5E-11 92.6 0.7 209 643-873 69-287 (418)
102 KOG4341 F-box protein containi 98.1 1.3E-07 2.7E-12 102.8 -4.9 276 550-868 139-440 (483)
103 PRK08084 DNA replication initi 98.1 4.9E-05 1.1E-09 81.5 14.8 170 185-391 22-208 (235)
104 PRK03992 proteasome-activating 98.1 2.5E-05 5.5E-10 90.1 13.3 173 183-385 129-336 (389)
105 PRK14951 DNA polymerase III su 98.1 4.3E-05 9.3E-10 91.7 15.5 195 181-389 12-222 (618)
106 PF00308 Bac_DnaA: Bacterial d 98.1 0.0001 2.2E-09 77.8 16.5 158 207-389 33-205 (219)
107 PRK14964 DNA polymerase III su 98.1 6.7E-05 1.5E-09 87.5 16.3 192 181-388 9-213 (491)
108 PRK09087 hypothetical protein; 98.1 5.9E-05 1.3E-09 80.0 14.5 140 208-391 44-194 (226)
109 PRK14958 DNA polymerase III su 98.1 7.4E-05 1.6E-09 88.6 16.7 191 181-389 12-217 (509)
110 KOG0531 Protein phosphatase 1, 98.1 6.6E-07 1.4E-11 104.9 -0.8 105 570-678 91-196 (414)
111 KOG0531 Protein phosphatase 1, 98.1 6.4E-07 1.4E-11 105.0 -1.1 54 787-843 234-287 (414)
112 PRK14955 DNA polymerase III su 98.0 5.6E-05 1.2E-09 87.7 14.2 200 181-389 12-225 (397)
113 TIGR00678 holB DNA polymerase 98.0 0.00011 2.4E-09 76.1 14.9 90 290-388 95-187 (188)
114 COG2255 RuvB Holliday junction 98.0 0.00012 2.7E-09 76.3 14.5 265 181-484 22-315 (332)
115 PRK05896 DNA polymerase III su 98.0 6.7E-05 1.5E-09 88.9 14.2 191 181-387 12-215 (605)
116 PRK14954 DNA polymerase III su 98.0 0.0001 2.2E-09 88.8 16.0 198 181-387 12-223 (620)
117 TIGR02881 spore_V_K stage V sp 98.0 7.4E-05 1.6E-09 81.7 13.5 153 186-363 7-193 (261)
118 PF14516 AAA_35: AAA-like doma 98.0 0.0015 3.3E-08 73.8 24.4 209 180-398 6-245 (331)
119 PRK14969 DNA polymerase III su 98.0 7.4E-05 1.6E-09 89.3 14.3 190 181-388 12-216 (527)
120 PRK07764 DNA polymerase III su 98.0 0.00015 3.3E-09 90.2 17.2 194 181-388 11-217 (824)
121 PRK14952 DNA polymerase III su 98.0 0.00021 4.6E-09 85.5 17.7 193 181-387 9-214 (584)
122 PRK14970 DNA polymerase III su 97.9 0.00015 3.3E-09 83.6 16.0 182 181-388 13-205 (367)
123 PRK14959 DNA polymerase III su 97.9 0.00012 2.7E-09 87.1 14.5 199 181-395 12-224 (624)
124 PHA02544 44 clamp loader, smal 97.9 0.0001 2.2E-09 83.3 13.5 152 181-359 17-171 (316)
125 PTZ00361 26 proteosome regulat 97.9 8.3E-05 1.8E-09 85.9 11.6 158 182-363 180-369 (438)
126 TIGR02639 ClpA ATP-dependent C 97.8 0.00011 2.5E-09 91.9 13.5 153 182-361 179-358 (731)
127 PRK14950 DNA polymerase III su 97.8 0.00063 1.4E-08 82.9 19.3 197 181-391 12-220 (585)
128 PRK09111 DNA polymerase III su 97.8 0.00037 8E-09 84.0 17.0 196 181-390 20-231 (598)
129 PRK14953 DNA polymerase III su 97.8 0.0012 2.7E-08 77.9 21.1 193 181-391 12-219 (486)
130 KOG1859 Leucine-rich repeat pr 97.8 3.4E-07 7.3E-12 105.3 -8.3 43 781-823 250-292 (1096)
131 TIGR03689 pup_AAA proteasome A 97.8 0.00011 2.5E-09 86.0 12.2 162 182-361 179-378 (512)
132 KOG1859 Leucine-rich repeat pr 97.8 2.7E-07 5.8E-12 106.2 -9.3 127 692-846 164-292 (1096)
133 PTZ00454 26S protease regulato 97.8 0.00024 5.1E-09 81.7 14.4 178 180-386 140-351 (398)
134 PF08937 DUF1863: MTH538 TIR-l 97.8 3.7E-05 7.9E-10 74.0 6.6 90 14-107 1-107 (130)
135 PRK14088 dnaA chromosomal repl 97.8 0.00055 1.2E-08 80.2 17.3 161 208-390 130-303 (440)
136 KOG0989 Replication factor C, 97.8 0.00013 2.8E-09 77.1 10.6 193 180-392 31-231 (346)
137 PF13855 LRR_8: Leucine rich r 97.8 2.7E-05 5.9E-10 63.8 4.6 57 646-702 2-59 (61)
138 PRK06305 DNA polymerase III su 97.8 0.00046 1E-08 81.0 16.5 192 181-387 13-217 (451)
139 TIGR00362 DnaA chromosomal rep 97.8 0.0012 2.5E-08 77.3 19.8 160 208-390 136-308 (405)
140 TIGR02903 spore_lon_C ATP-depe 97.8 0.00013 2.9E-09 88.9 12.1 50 181-232 150-199 (615)
141 PRK07133 DNA polymerase III su 97.8 0.00044 9.6E-09 83.8 16.1 187 181-387 14-214 (725)
142 PRK08451 DNA polymerase III su 97.8 0.00035 7.6E-09 82.4 14.9 192 181-390 10-216 (535)
143 PRK14971 DNA polymerase III su 97.8 0.0017 3.6E-08 79.0 21.1 192 181-388 13-218 (614)
144 PRK06647 DNA polymerase III su 97.8 0.0021 4.5E-08 77.3 21.6 190 181-389 12-217 (563)
145 PF13855 LRR_8: Leucine rich r 97.7 3.1E-05 6.8E-10 63.5 4.0 39 640-678 20-59 (61)
146 KOG2982 Uncharacterized conser 97.7 1.6E-05 3.4E-10 82.8 2.5 43 781-823 220-262 (418)
147 PRK00149 dnaA chromosomal repl 97.7 0.00056 1.2E-08 81.0 15.8 159 208-389 148-319 (450)
148 PRK06620 hypothetical protein; 97.7 0.00021 4.6E-09 75.1 10.8 133 209-388 45-185 (214)
149 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00043 9.3E-09 87.5 14.7 183 181-386 183-390 (852)
150 PRK08116 hypothetical protein; 97.7 0.00024 5.1E-09 77.5 10.9 101 209-328 115-220 (268)
151 TIGR02880 cbbX_cfxQ probable R 97.7 0.00078 1.7E-08 74.3 15.0 130 210-362 60-209 (284)
152 PRK09376 rho transcription ter 97.7 4.7E-05 1E-09 84.6 5.4 96 207-305 168-270 (416)
153 PRK12422 chromosomal replicati 97.7 0.00099 2.2E-08 77.9 16.4 154 208-385 141-306 (445)
154 PRK05563 DNA polymerase III su 97.6 0.0011 2.3E-08 80.1 17.0 192 181-388 12-216 (559)
155 PRK14948 DNA polymerase III su 97.6 0.00077 1.7E-08 81.9 15.7 198 181-391 12-221 (620)
156 PRK14086 dnaA chromosomal repl 97.6 0.0012 2.5E-08 78.6 16.7 154 209-387 315-483 (617)
157 CHL00176 ftsH cell division pr 97.6 0.00085 1.8E-08 81.6 15.7 173 183-384 181-386 (638)
158 CHL00181 cbbX CbbX; Provisiona 97.6 0.0011 2.4E-08 73.0 15.3 131 209-363 60-211 (287)
159 cd01128 rho_factor Transcripti 97.6 5.9E-05 1.3E-09 80.7 4.7 95 207-304 15-116 (249)
160 COG1222 RPT1 ATP-dependent 26S 97.6 0.0008 1.7E-08 72.8 13.1 169 184-386 150-357 (406)
161 PRK07952 DNA replication prote 97.6 0.0014 3E-08 69.9 14.9 35 208-242 99-133 (244)
162 CHL00195 ycf46 Ycf46; Provisio 97.6 0.001 2.2E-08 78.2 15.1 176 183-386 226-429 (489)
163 KOG0991 Replication factor C, 97.6 0.00059 1.3E-08 68.9 10.7 51 181-233 23-73 (333)
164 KOG2543 Origin recognition com 97.6 0.0003 6.6E-09 76.5 9.4 170 183-360 4-192 (438)
165 TIGR01241 FtsH_fam ATP-depende 97.6 0.00078 1.7E-08 80.8 14.1 175 182-385 52-259 (495)
166 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00098 2.1E-08 84.9 15.6 156 182-361 170-349 (852)
167 PRK05707 DNA polymerase III su 97.5 0.0015 3.3E-08 73.2 15.3 94 292-392 107-203 (328)
168 PF05673 DUF815: Protein of un 97.5 0.0023 5.1E-08 66.8 15.3 55 181-235 23-79 (249)
169 COG5238 RNA1 Ran GTPase-activa 97.5 6.8E-06 1.5E-10 84.4 -3.2 241 573-843 29-313 (388)
170 CHL00095 clpC Clp protease ATP 97.5 0.00074 1.6E-08 85.8 13.8 49 184-234 178-226 (821)
171 KOG3665 ZYG-1-like serine/thre 97.5 2.7E-05 5.9E-10 95.2 0.9 155 668-844 122-286 (699)
172 PF12799 LRR_4: Leucine Rich r 97.5 8E-05 1.7E-09 56.0 3.0 39 786-826 2-40 (44)
173 PF08357 SEFIR: SEFIR domain; 97.5 0.00011 2.4E-09 72.9 5.0 65 15-79 2-70 (150)
174 PRK14965 DNA polymerase III su 97.5 0.00097 2.1E-08 80.8 13.8 196 181-392 12-221 (576)
175 PF00004 AAA: ATPase family as 97.5 0.00042 9.2E-09 66.9 8.6 23 211-233 1-23 (132)
176 TIGR00602 rad24 checkpoint pro 97.5 0.00072 1.6E-08 81.5 12.1 54 180-233 79-135 (637)
177 PRK12377 putative replication 97.5 0.0021 4.6E-08 68.7 14.4 36 208-243 101-136 (248)
178 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.4E-09 55.3 3.3 42 810-852 1-42 (44)
179 PRK10865 protein disaggregatio 97.4 0.00072 1.6E-08 85.8 12.4 51 182-234 175-225 (857)
180 TIGR00767 rho transcription te 97.4 0.00032 6.8E-09 78.7 7.3 96 207-305 167-269 (415)
181 COG3267 ExeA Type II secretory 97.4 0.0071 1.5E-07 62.9 16.3 179 206-394 49-247 (269)
182 KOG2227 Pre-initiation complex 97.4 0.0034 7.3E-08 70.4 14.7 174 183-362 148-339 (529)
183 PF10443 RNA12: RNA12 protein; 97.4 0.045 9.8E-07 61.9 23.7 103 291-397 148-283 (431)
184 PRK11034 clpA ATP-dependent Cl 97.4 0.0008 1.7E-08 83.3 10.9 155 185-361 186-362 (758)
185 PLN00020 ribulose bisphosphate 97.3 0.0027 5.8E-08 70.0 13.5 152 206-387 146-333 (413)
186 PRK07399 DNA polymerase III su 97.3 0.0079 1.7E-07 67.1 17.1 194 185-392 4-221 (314)
187 COG5238 RNA1 Ran GTPase-activa 97.3 3E-05 6.4E-10 79.8 -1.9 43 688-730 88-134 (388)
188 TIGR01243 CDC48 AAA family ATP 97.3 0.0017 3.7E-08 81.9 13.2 175 183-386 176-381 (733)
189 COG0593 DnaA ATPase involved i 97.3 0.0074 1.6E-07 68.4 16.4 134 207-363 112-259 (408)
190 PRK08181 transposase; Validate 97.2 0.0009 1.9E-08 72.5 8.6 35 209-243 107-141 (269)
191 KOG3665 ZYG-1-like serine/thre 97.2 0.00012 2.6E-09 89.6 2.1 135 595-730 120-264 (699)
192 PRK06526 transposase; Provisio 97.2 0.00081 1.8E-08 72.5 7.5 28 208-235 98-125 (254)
193 PRK10536 hypothetical protein; 97.2 0.0018 4E-08 68.4 9.8 136 185-329 55-213 (262)
194 COG0466 Lon ATP-dependent Lon 97.2 0.0061 1.3E-07 72.0 14.6 162 185-362 323-509 (782)
195 PRK09183 transposase/IS protei 97.2 0.0013 2.8E-08 71.4 8.7 27 208-234 102-128 (259)
196 KOG0744 AAA+-type ATPase [Post 97.1 0.0024 5.2E-08 67.9 9.9 81 208-304 177-263 (423)
197 TIGR01243 CDC48 AAA family ATP 97.1 0.0056 1.2E-07 77.2 14.7 173 184-386 452-657 (733)
198 PF01695 IstB_IS21: IstB-like 97.1 0.00077 1.7E-08 68.6 5.5 36 208-243 47-82 (178)
199 PRK08769 DNA polymerase III su 97.1 0.014 2.9E-07 65.0 15.6 95 290-393 112-209 (319)
200 COG1373 Predicted ATPase (AAA+ 97.0 0.0048 1E-07 71.4 12.5 136 192-357 24-163 (398)
201 smart00382 AAA ATPases associa 97.0 0.0017 3.7E-08 63.2 7.5 28 209-236 3-30 (148)
202 KOG4579 Leucine-rich repeat (L 97.0 5.7E-05 1.2E-09 70.0 -2.9 60 784-845 76-135 (177)
203 TIGR00763 lon ATP-dependent pr 97.0 0.0082 1.8E-07 75.9 15.1 52 185-236 320-375 (775)
204 PRK08058 DNA polymerase III su 97.0 0.015 3.2E-07 65.8 15.2 161 185-360 5-181 (329)
205 PRK06835 DNA replication prote 96.9 0.0029 6.4E-08 70.7 9.3 35 209-243 184-218 (329)
206 PRK06871 DNA polymerase III su 96.9 0.028 6.1E-07 62.6 16.5 92 290-389 106-200 (325)
207 PF05621 TniB: Bacterial TniB 96.9 0.022 4.8E-07 61.7 15.0 201 185-390 34-259 (302)
208 PRK06921 hypothetical protein; 96.9 0.0023 5E-08 69.7 7.5 36 208-243 117-153 (266)
209 PRK07993 DNA polymerase III su 96.9 0.022 4.8E-07 64.1 15.4 93 290-390 107-202 (334)
210 KOG1644 U2-associated snRNP A' 96.8 0.0016 3.5E-08 64.9 5.3 60 598-659 43-102 (233)
211 PRK10865 protein disaggregatio 96.8 0.025 5.5E-07 72.0 17.3 51 184-234 567-624 (857)
212 COG1223 Predicted ATPase (AAA+ 96.8 0.012 2.6E-07 60.8 11.3 172 184-385 120-318 (368)
213 PHA00729 NTP-binding motif con 96.8 0.0033 7.2E-08 65.4 7.4 27 207-233 16-42 (226)
214 TIGR02639 ClpA ATP-dependent C 96.8 0.02 4.4E-07 72.0 15.7 50 184-233 453-509 (731)
215 COG0542 clpA ATP-binding subun 96.7 0.015 3.1E-07 70.9 13.5 120 184-316 490-620 (786)
216 PRK10787 DNA-binding ATP-depen 96.7 0.024 5.3E-07 71.0 15.5 159 185-361 322-506 (784)
217 KOG0733 Nuclear AAA ATPase (VC 96.7 0.012 2.6E-07 67.9 11.5 53 184-236 189-251 (802)
218 PRK06090 DNA polymerase III su 96.7 0.077 1.7E-06 59.0 17.7 91 291-392 108-201 (319)
219 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0045 9.8E-08 66.6 7.8 96 207-305 68-177 (274)
220 KOG1947 Leucine rich repeat pr 96.7 0.00022 4.8E-09 85.9 -2.5 110 596-705 187-308 (482)
221 KOG0735 AAA+-type ATPase [Post 96.7 0.02 4.2E-07 67.4 13.0 162 208-393 431-617 (952)
222 TIGR02640 gas_vesic_GvpN gas v 96.6 0.028 6.1E-07 61.3 13.5 26 209-234 22-47 (262)
223 KOG0741 AAA+-type ATPase [Post 96.6 0.017 3.7E-07 65.5 11.6 128 206-360 536-685 (744)
224 PRK08939 primosomal protein Dn 96.6 0.0082 1.8E-07 66.7 9.1 37 207-243 155-191 (306)
225 PRK04132 replication factor C 96.5 0.019 4.2E-07 71.4 13.0 151 216-389 574-728 (846)
226 PRK11034 clpA ATP-dependent Cl 96.5 0.02 4.3E-07 71.3 13.2 49 185-233 458-513 (758)
227 COG2812 DnaX DNA polymerase II 96.5 0.012 2.5E-07 68.9 10.3 189 181-386 12-214 (515)
228 PRK00771 signal recognition pa 96.5 0.061 1.3E-06 62.5 16.2 29 207-235 94-122 (437)
229 PRK10733 hflB ATP-dependent me 96.5 0.026 5.7E-07 69.6 13.6 129 209-363 186-337 (644)
230 KOG0731 AAA+-type ATPase conta 96.5 0.046 9.9E-07 66.2 15.0 175 182-388 308-520 (774)
231 CHL00095 clpC Clp protease ATP 96.4 0.031 6.7E-07 71.3 14.5 132 185-328 509-661 (821)
232 KOG2739 Leucine-rich acidic nu 96.4 0.0018 3.9E-08 67.5 2.7 85 781-865 61-154 (260)
233 TIGR03345 VI_ClpV1 type VI sec 96.4 0.027 5.8E-07 71.6 13.5 50 185-234 566-622 (852)
234 PRK06964 DNA polymerase III su 96.4 0.081 1.8E-06 59.4 15.8 91 291-392 132-225 (342)
235 PRK12608 transcription termina 96.4 0.0081 1.8E-07 67.2 7.6 105 196-304 122-233 (380)
236 PRK11889 flhF flagellar biosyn 96.4 0.11 2.4E-06 58.5 16.3 29 207-235 240-268 (436)
237 PF04665 Pox_A32: Poxvirus A32 96.4 0.021 4.6E-07 60.2 10.2 33 210-242 15-47 (241)
238 PRK11331 5-methylcytosine-spec 96.3 0.0085 1.8E-07 68.6 7.7 47 184-234 174-220 (459)
239 PF13207 AAA_17: AAA domain; P 96.3 0.0033 7.1E-08 59.7 3.7 23 210-232 1-23 (121)
240 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0034 7.3E-08 69.9 4.2 50 185-234 51-104 (361)
241 COG1484 DnaC DNA replication p 96.3 0.012 2.7E-07 63.4 8.3 34 207-241 104-137 (254)
242 PRK09361 radB DNA repair and r 96.3 0.0075 1.6E-07 64.4 6.5 48 196-243 11-58 (225)
243 KOG1644 U2-associated snRNP A' 96.3 0.0066 1.4E-07 60.6 5.4 103 621-749 42-150 (233)
244 cd01131 PilT Pilus retraction 96.3 0.014 3.1E-07 60.7 8.3 110 209-331 2-111 (198)
245 COG2607 Predicted ATPase (AAA+ 96.2 0.038 8.2E-07 56.8 10.8 57 182-238 57-115 (287)
246 KOG0730 AAA+-type ATPase [Post 96.2 0.055 1.2E-06 63.6 13.4 151 186-363 435-617 (693)
247 PRK08118 topology modulation p 96.2 0.0087 1.9E-07 60.3 6.3 25 210-234 3-27 (167)
248 PRK07261 topology modulation p 96.2 0.0076 1.6E-07 61.1 5.7 23 210-232 2-24 (171)
249 PRK05541 adenylylsulfate kinas 96.2 0.014 3E-07 59.6 7.8 37 207-243 6-42 (176)
250 KOG2004 Mitochondrial ATP-depe 96.2 0.023 4.9E-07 67.0 10.0 52 186-237 412-467 (906)
251 KOG0728 26S proteasome regulat 96.2 0.058 1.3E-06 55.4 11.7 152 180-361 141-331 (404)
252 PF07693 KAP_NTPase: KAP famil 96.2 0.17 3.6E-06 57.5 17.3 45 191-235 2-47 (325)
253 TIGR02902 spore_lonB ATP-depen 96.2 0.051 1.1E-06 65.5 13.5 50 181-232 61-110 (531)
254 TIGR03346 chaperone_ClpB ATP-d 96.2 0.052 1.1E-06 69.5 14.3 51 184-234 564-621 (852)
255 COG0470 HolB ATPase involved i 96.1 0.05 1.1E-06 61.7 12.9 49 186-234 2-50 (325)
256 KOG0733 Nuclear AAA ATPase (VC 96.1 0.019 4.1E-07 66.3 8.9 128 208-362 545-693 (802)
257 PF13177 DNA_pol3_delta2: DNA 96.1 0.019 4.2E-07 57.5 8.2 145 189-348 1-161 (162)
258 PRK10867 signal recognition pa 96.1 0.12 2.7E-06 59.8 15.8 29 207-235 99-127 (433)
259 TIGR00959 ffh signal recogniti 96.1 0.13 2.8E-06 59.7 15.9 27 207-233 98-124 (428)
260 KOG4579 Leucine-rich repeat (L 96.1 0.00028 6.2E-09 65.5 -4.5 103 623-750 29-134 (177)
261 COG1618 Predicted nucleotide k 96.1 0.0059 1.3E-07 58.7 4.0 38 210-247 7-46 (179)
262 PF02562 PhoH: PhoH-like prote 96.1 0.021 4.5E-07 59.0 8.2 131 190-329 5-156 (205)
263 KOG0734 AAA+-type ATPase conta 96.1 0.031 6.8E-07 63.5 10.0 147 185-361 304-484 (752)
264 PF07728 AAA_5: AAA domain (dy 96.0 0.0034 7.3E-08 61.3 2.3 22 211-232 2-23 (139)
265 cd01120 RecA-like_NTPases RecA 96.0 0.015 3.3E-07 58.3 7.0 34 210-243 1-34 (165)
266 TIGR00064 ftsY signal recognit 96.0 0.11 2.4E-06 56.8 14.1 30 206-235 70-99 (272)
267 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.044 9.5E-07 54.1 9.7 119 209-330 3-139 (159)
268 PRK06696 uridine kinase; Valid 96.0 0.0083 1.8E-07 63.9 5.0 46 190-235 3-49 (223)
269 KOG2228 Origin recognition com 96.0 0.041 8.8E-07 59.4 9.9 177 183-361 22-219 (408)
270 PRK08699 DNA polymerase III su 96.0 0.18 4E-06 56.6 15.7 84 294-388 116-202 (325)
271 PRK14974 cell division protein 95.9 0.23 5.1E-06 55.7 16.4 29 207-235 139-167 (336)
272 PF14532 Sigma54_activ_2: Sigm 95.9 0.0072 1.6E-07 58.9 4.0 46 188-233 1-46 (138)
273 COG0464 SpoVK ATPases of the A 95.9 0.063 1.4E-06 64.7 12.7 153 184-363 241-425 (494)
274 PRK04296 thymidine kinase; Pro 95.9 0.013 2.8E-07 60.6 5.7 112 209-330 3-117 (190)
275 COG0488 Uup ATPase components 95.9 0.31 6.7E-06 58.2 17.8 55 285-347 451-511 (530)
276 cd01393 recA_like RecA is a b 95.8 0.032 7E-07 59.5 8.9 48 196-243 7-60 (226)
277 PRK06067 flagellar accessory p 95.8 0.034 7.4E-07 59.7 9.1 49 195-243 12-60 (234)
278 cd01394 radB RadB. The archaea 95.8 0.016 3.4E-07 61.6 6.3 49 195-243 6-54 (218)
279 TIGR02237 recomb_radB DNA repa 95.8 0.011 2.4E-07 62.2 4.9 44 200-243 4-47 (209)
280 PF13604 AAA_30: AAA domain; P 95.8 0.052 1.1E-06 56.4 9.7 39 194-235 7-45 (196)
281 PRK07667 uridine kinase; Provi 95.8 0.017 3.6E-07 59.9 6.1 42 194-235 3-44 (193)
282 PF00448 SRP54: SRP54-type pro 95.7 0.022 4.8E-07 58.9 6.8 28 208-235 1-28 (196)
283 KOG1514 Origin recognition com 95.7 0.22 4.8E-06 59.1 15.3 168 183-362 394-590 (767)
284 PF03215 Rad17: Rad17 cell cyc 95.7 0.059 1.3E-06 64.1 11.1 51 183-233 17-70 (519)
285 PRK11608 pspF phage shock prot 95.7 0.1 2.3E-06 58.8 12.6 46 185-230 6-51 (326)
286 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.056 1.2E-06 58.1 10.0 49 195-243 8-56 (237)
287 cd00544 CobU Adenosylcobinamid 95.7 0.025 5.5E-07 56.9 6.7 79 211-300 2-82 (169)
288 PRK10416 signal recognition pa 95.6 0.1 2.2E-06 58.4 12.0 35 207-242 113-147 (318)
289 KOG0652 26S proteasome regulat 95.6 0.24 5.2E-06 51.3 13.3 184 183-396 169-391 (424)
290 KOG2739 Leucine-rich acidic nu 95.6 0.0059 1.3E-07 63.7 1.9 83 666-749 63-153 (260)
291 PF01583 APS_kinase: Adenylyls 95.6 0.017 3.8E-07 56.7 5.0 36 208-243 2-37 (156)
292 KOG0727 26S proteasome regulat 95.6 0.15 3.2E-06 52.6 11.7 52 185-236 155-217 (408)
293 PRK12724 flagellar biosynthesi 95.5 0.18 3.9E-06 57.6 13.5 25 208-232 223-247 (432)
294 KOG1970 Checkpoint RAD17-RFC c 95.5 0.17 3.7E-06 58.3 13.2 44 190-233 87-135 (634)
295 PTZ00494 tuzin-like protein; P 95.5 1.4 3E-05 49.9 19.7 198 149-361 325-544 (664)
296 COG0542 clpA ATP-binding subun 95.5 0.035 7.6E-07 67.7 8.3 156 184-361 169-346 (786)
297 PF13671 AAA_33: AAA domain; P 95.5 0.019 4E-07 56.3 5.1 24 210-233 1-24 (143)
298 COG1875 NYN ribonuclease and A 95.5 0.077 1.7E-06 58.0 9.9 34 292-328 352-387 (436)
299 PRK06762 hypothetical protein; 95.5 0.056 1.2E-06 54.5 8.6 25 208-232 2-26 (166)
300 KOG2035 Replication factor C, 95.5 0.48 1E-05 50.0 15.0 227 185-429 13-281 (351)
301 TIGR02974 phageshock_pspF psp 95.5 0.18 4E-06 56.8 13.4 46 187-232 1-46 (329)
302 TIGR01425 SRP54_euk signal rec 95.5 0.51 1.1E-05 54.5 17.0 29 207-235 99-127 (429)
303 cd01121 Sms Sms (bacterial rad 95.4 0.046 9.9E-07 62.4 8.5 49 195-243 69-117 (372)
304 COG2884 FtsE Predicted ATPase 95.4 0.095 2.1E-06 52.2 9.3 56 279-336 143-204 (223)
305 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.11 2.4E-06 53.3 10.6 23 210-232 1-23 (183)
306 PRK15455 PrkA family serine pr 95.4 0.017 3.6E-07 67.7 4.8 51 185-235 76-130 (644)
307 TIGR02012 tigrfam_recA protein 95.3 0.04 8.6E-07 61.1 7.4 48 196-243 42-90 (321)
308 cd01129 PulE-GspE PulE/GspE Th 95.3 0.077 1.7E-06 57.8 9.4 102 194-312 69-170 (264)
309 TIGR01817 nifA Nif-specific re 95.3 0.13 2.7E-06 62.7 12.3 50 183-232 194-243 (534)
310 cd00983 recA RecA is a bacter 95.3 0.046 1E-06 60.6 7.6 49 195-243 41-90 (325)
311 PRK15429 formate hydrogenlyase 95.2 0.039 8.4E-07 69.2 7.9 50 183-232 374-423 (686)
312 KOG0739 AAA+-type ATPase [Post 95.2 2.9 6.3E-05 44.7 19.7 176 182-386 130-335 (439)
313 PF13238 AAA_18: AAA domain; P 95.2 0.017 3.6E-07 55.4 3.4 22 211-232 1-22 (129)
314 PF10137 TIR-like: Predicted n 95.1 0.05 1.1E-06 51.3 6.3 61 15-78 1-61 (125)
315 PF00406 ADK: Adenylate kinase 95.1 0.06 1.3E-06 53.4 7.4 88 213-311 1-94 (151)
316 PRK04328 hypothetical protein; 95.1 0.11 2.4E-06 56.2 9.9 48 196-243 11-58 (249)
317 PF07726 AAA_3: ATPase family 95.1 0.014 3.1E-07 54.6 2.5 28 211-238 2-29 (131)
318 KOG1947 Leucine rich repeat pr 95.1 0.0038 8.3E-08 75.1 -1.7 58 784-841 268-329 (482)
319 KOG0651 26S proteasome regulat 95.1 0.07 1.5E-06 56.9 7.8 30 207-236 165-194 (388)
320 PF00485 PRK: Phosphoribulokin 95.0 0.021 4.5E-07 59.4 3.8 26 210-235 1-26 (194)
321 PRK09354 recA recombinase A; P 95.0 0.061 1.3E-06 60.2 7.6 49 195-243 46-95 (349)
322 PRK12723 flagellar biosynthesi 95.0 0.19 4.1E-06 57.5 11.6 27 207-233 173-199 (388)
323 PF08433 KTI12: Chromatin asso 94.9 0.062 1.3E-06 58.5 7.3 26 209-234 2-27 (270)
324 TIGR01420 pilT_fam pilus retra 94.9 0.058 1.3E-06 61.3 7.2 109 208-329 122-230 (343)
325 PRK15115 response regulator Gl 94.8 2.6 5.7E-05 50.0 21.7 48 185-232 134-181 (444)
326 cd02027 APSK Adenosine 5'-phos 94.8 0.15 3.2E-06 50.4 9.1 24 210-233 1-24 (149)
327 cd01124 KaiC KaiC is a circadi 94.8 0.099 2.1E-06 53.8 8.3 33 211-243 2-34 (187)
328 PRK05800 cobU adenosylcobinami 94.8 0.037 8.1E-07 55.8 4.9 23 210-232 3-25 (170)
329 KOG0738 AAA+-type ATPase [Post 94.8 0.46 1E-05 52.5 13.3 68 168-235 193-272 (491)
330 COG4608 AppF ABC-type oligopep 94.8 0.089 1.9E-06 55.9 7.7 124 207-334 38-175 (268)
331 cd03238 ABC_UvrA The excision 94.8 0.12 2.7E-06 52.4 8.5 23 207-229 20-42 (176)
332 PRK09270 nucleoside triphospha 94.7 0.039 8.5E-07 59.0 5.1 32 205-236 30-61 (229)
333 cd01123 Rad51_DMC1_radA Rad51_ 94.7 0.046 1E-06 58.7 5.7 37 196-232 7-43 (235)
334 cd02019 NK Nucleoside/nucleoti 94.7 0.026 5.6E-07 47.4 2.8 23 210-232 1-23 (69)
335 PRK13531 regulatory ATPase Rav 94.7 0.032 7E-07 64.6 4.5 47 184-234 19-65 (498)
336 COG4088 Predicted nucleotide k 94.6 0.062 1.3E-06 53.9 5.7 27 209-235 2-28 (261)
337 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.6 0.09 1.9E-06 51.6 7.0 100 207-332 25-130 (144)
338 cd03115 SRP The signal recogni 94.6 0.18 4E-06 51.2 9.5 26 210-235 2-27 (173)
339 PRK03839 putative kinase; Prov 94.6 0.027 5.8E-07 57.8 3.2 24 210-233 2-25 (180)
340 PRK05480 uridine/cytidine kina 94.6 0.031 6.8E-07 58.8 3.8 26 207-232 5-30 (209)
341 PRK11823 DNA repair protein Ra 94.6 0.11 2.5E-06 61.0 8.8 50 194-243 66-115 (446)
342 PF00910 RNA_helicase: RNA hel 94.5 0.024 5.1E-07 52.4 2.5 26 211-236 1-26 (107)
343 KOG2123 Uncharacterized conser 94.5 0.0021 4.6E-08 66.8 -4.9 14 807-820 85-98 (388)
344 PRK08233 hypothetical protein; 94.5 0.028 6.1E-07 57.7 3.3 26 208-233 3-28 (182)
345 KOG0729 26S proteasome regulat 94.5 0.1 2.2E-06 54.2 7.0 55 185-244 177-242 (435)
346 cd01858 NGP_1 NGP-1. Autoanti 94.5 0.27 5.8E-06 49.1 10.2 23 208-230 102-124 (157)
347 PRK00625 shikimate kinase; Pro 94.4 0.029 6.3E-07 56.7 3.1 24 210-233 2-25 (173)
348 TIGR00416 sms DNA repair prote 94.4 0.12 2.6E-06 60.9 8.6 51 193-243 79-129 (454)
349 TIGR03499 FlhF flagellar biosy 94.4 0.13 2.9E-06 56.6 8.5 28 207-234 193-220 (282)
350 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.08 1.7E-06 56.2 6.4 51 281-333 147-203 (254)
351 PTZ00301 uridine kinase; Provi 94.4 0.036 7.8E-07 57.9 3.8 29 208-236 3-31 (210)
352 KOG0066 eIF2-interacting prote 94.4 0.89 1.9E-05 50.7 14.3 23 208-230 613-635 (807)
353 COG0465 HflB ATP-dependent Zn 94.4 0.23 5.1E-06 59.1 10.8 174 183-388 148-357 (596)
354 PTZ00088 adenylate kinase 1; P 94.3 0.12 2.7E-06 54.7 7.7 22 211-232 9-30 (229)
355 PF03308 ArgK: ArgK protein; 94.3 0.12 2.6E-06 54.6 7.3 42 194-235 15-56 (266)
356 PRK14527 adenylate kinase; Pro 94.3 0.14 2.9E-06 53.1 7.9 27 207-233 5-31 (191)
357 TIGR00150 HI0065_YjeE ATPase, 94.3 0.052 1.1E-06 51.8 4.3 41 193-233 7-47 (133)
358 PRK05703 flhF flagellar biosyn 94.3 0.31 6.8E-06 56.8 11.7 26 208-233 221-246 (424)
359 KOG0726 26S proteasome regulat 94.3 0.13 2.8E-06 54.2 7.5 54 183-236 183-247 (440)
360 TIGR00235 udk uridine kinase. 94.3 0.039 8.5E-07 58.0 3.8 28 206-233 4-31 (207)
361 KOG1969 DNA replication checkp 94.3 0.082 1.8E-06 62.7 6.6 28 205-232 323-350 (877)
362 PRK12727 flagellar biosynthesi 94.3 0.36 7.7E-06 56.8 11.7 29 207-235 349-377 (559)
363 PRK04040 adenylate kinase; Pro 94.3 0.043 9.2E-07 56.5 3.9 25 209-233 3-27 (188)
364 TIGR02782 TrbB_P P-type conjug 94.3 0.06 1.3E-06 59.7 5.4 90 209-311 133-224 (299)
365 PRK14722 flhF flagellar biosyn 94.2 0.37 8E-06 54.7 11.6 30 207-236 136-165 (374)
366 TIGR03574 selen_PSTK L-seryl-t 94.2 0.094 2E-06 56.9 6.8 26 210-235 1-26 (249)
367 PF08423 Rad51: Rad51; InterP 94.2 0.068 1.5E-06 57.9 5.6 38 195-232 25-62 (256)
368 PF00437 T2SE: Type II/IV secr 94.2 0.14 3E-06 56.4 8.2 125 186-328 105-231 (270)
369 COG0572 Udk Uridine kinase [Nu 94.2 0.05 1.1E-06 56.1 4.2 30 206-235 6-35 (218)
370 TIGR02858 spore_III_AA stage I 94.2 0.12 2.6E-06 56.2 7.5 115 207-332 110-232 (270)
371 cd03214 ABC_Iron-Siderophores_ 94.2 0.13 2.9E-06 52.6 7.5 123 207-332 24-161 (180)
372 cd03223 ABCD_peroxisomal_ALDP 94.2 0.14 2.9E-06 51.7 7.4 26 207-232 26-51 (166)
373 PRK00131 aroK shikimate kinase 94.2 0.038 8.3E-07 56.2 3.4 26 208-233 4-29 (175)
374 cd01130 VirB11-like_ATPase Typ 94.1 0.055 1.2E-06 55.7 4.5 95 208-311 25-120 (186)
375 PRK00279 adk adenylate kinase; 94.1 0.19 4.2E-06 53.1 8.7 24 210-233 2-25 (215)
376 cd03228 ABCC_MRP_Like The MRP 94.1 0.22 4.8E-06 50.5 8.8 36 207-243 27-62 (171)
377 PRK12726 flagellar biosynthesi 94.1 0.37 8E-06 54.3 10.9 29 207-235 205-233 (407)
378 COG1066 Sms Predicted ATP-depe 94.0 0.23 4.9E-06 55.6 9.1 99 194-302 79-179 (456)
379 cd03216 ABC_Carb_Monos_I This 94.0 0.1 2.2E-06 52.4 6.1 115 207-332 25-145 (163)
380 cd03222 ABC_RNaseL_inhibitor T 94.0 0.13 2.7E-06 52.3 6.7 34 208-242 25-58 (177)
381 TIGR00708 cobA cob(I)alamin ad 94.0 0.2 4.2E-06 50.2 7.8 118 208-330 5-141 (173)
382 cd01125 repA Hexameric Replica 94.0 0.38 8.1E-06 51.8 10.7 24 210-233 3-26 (239)
383 TIGR02655 circ_KaiC circadian 94.0 0.12 2.7E-06 61.7 7.6 51 193-243 248-298 (484)
384 PRK14528 adenylate kinase; Pro 93.9 0.27 5.9E-06 50.5 9.1 24 209-232 2-25 (186)
385 CHL00206 ycf2 Ycf2; Provisiona 93.9 0.19 4.2E-06 66.4 9.4 27 207-233 1629-1655(2281)
386 PRK10820 DNA-binding transcrip 93.9 1.2 2.5E-05 53.9 15.8 49 183-231 202-250 (520)
387 TIGR01360 aden_kin_iso1 adenyl 93.9 0.047 1E-06 56.3 3.4 26 207-232 2-27 (188)
388 COG3854 SpoIIIAA ncharacterize 93.9 0.28 6.1E-06 50.3 8.6 111 208-328 137-252 (308)
389 PRK09280 F0F1 ATP synthase sub 93.8 0.17 3.8E-06 58.7 8.1 95 207-304 143-251 (463)
390 PRK13947 shikimate kinase; Pro 93.8 0.045 9.8E-07 55.5 3.0 26 210-235 3-28 (171)
391 COG5635 Predicted NTPase (NACH 93.8 0.63 1.4E-05 59.6 13.9 193 209-413 223-449 (824)
392 cd01122 GP4d_helicase GP4d_hel 93.7 0.3 6.5E-06 53.7 9.7 36 207-242 29-65 (271)
393 PRK00889 adenylylsulfate kinas 93.7 0.082 1.8E-06 53.9 4.8 27 208-234 4-30 (175)
394 PHA02244 ATPase-like protein 93.7 0.11 2.3E-06 58.2 5.8 50 182-235 93-146 (383)
395 KOG0743 AAA+-type ATPase [Post 93.7 0.64 1.4E-05 52.8 11.9 25 209-233 236-260 (457)
396 TIGR01351 adk adenylate kinase 93.7 0.24 5.2E-06 52.2 8.3 22 211-232 2-23 (210)
397 PRK05022 anaerobic nitric oxid 93.6 0.14 3.1E-06 61.6 7.4 51 183-233 185-235 (509)
398 PRK08356 hypothetical protein; 93.6 0.2 4.4E-06 51.9 7.6 21 209-229 6-26 (195)
399 PRK14723 flhF flagellar biosyn 93.6 0.48 1E-05 58.4 11.7 26 208-233 185-210 (767)
400 PRK05986 cob(I)alamin adenolsy 93.6 0.3 6.5E-06 49.7 8.4 120 207-330 21-159 (191)
401 COG0468 RecA RecA/RadA recombi 93.6 0.17 3.6E-06 55.0 7.0 47 197-243 49-95 (279)
402 KOG1051 Chaperone HSP104 and r 93.6 0.52 1.1E-05 58.8 11.9 104 185-304 562-673 (898)
403 PRK06547 hypothetical protein; 93.6 0.067 1.4E-06 54.1 3.7 27 206-232 13-39 (172)
404 cd00227 CPT Chloramphenicol (C 93.5 0.058 1.3E-06 55.0 3.3 26 209-234 3-28 (175)
405 PRK03846 adenylylsulfate kinas 93.5 0.098 2.1E-06 54.5 5.1 37 206-242 22-58 (198)
406 KOG2123 Uncharacterized conser 93.5 0.0054 1.2E-07 64.0 -4.3 67 781-850 37-105 (388)
407 PRK09302 circadian clock prote 93.4 0.28 6.2E-06 59.2 9.5 52 192-243 15-67 (509)
408 TIGR03600 phage_DnaB phage rep 93.4 0.95 2.1E-05 53.3 13.6 46 187-233 174-219 (421)
409 TIGR00390 hslU ATP-dependent p 93.4 0.08 1.7E-06 60.1 4.3 52 185-236 12-75 (441)
410 TIGR02525 plasmid_TraJ plasmid 93.4 0.17 3.6E-06 57.7 6.9 106 209-327 150-257 (372)
411 cd03247 ABCC_cytochrome_bd The 93.4 0.25 5.5E-06 50.4 7.7 35 207-242 27-61 (178)
412 cd02028 UMPK_like Uridine mono 93.4 0.085 1.8E-06 53.9 4.2 26 210-235 1-26 (179)
413 TIGR02329 propionate_PrpR prop 93.4 0.79 1.7E-05 55.0 12.9 48 184-231 211-258 (526)
414 PRK14529 adenylate kinase; Pro 93.4 0.29 6.3E-06 51.5 8.2 90 211-309 3-95 (223)
415 cd01857 HSR1_MMR1 HSR1/MMR1. 93.4 0.7 1.5E-05 45.0 10.6 51 59-110 3-53 (141)
416 PRK10923 glnG nitrogen regulat 93.3 0.76 1.7E-05 55.1 13.0 48 185-232 138-185 (469)
417 PRK13765 ATP-dependent proteas 93.3 0.085 1.8E-06 64.3 4.8 79 179-267 25-104 (637)
418 KOG0736 Peroxisome assembly fa 93.3 1.2 2.6E-05 53.7 13.8 58 178-235 664-732 (953)
419 COG0529 CysC Adenylylsulfate k 93.3 0.12 2.5E-06 50.9 4.7 31 207-237 22-52 (197)
420 PF00560 LRR_1: Leucine Rich R 93.3 0.026 5.7E-07 35.3 0.2 18 812-829 2-19 (22)
421 PRK12597 F0F1 ATP synthase sub 93.2 0.25 5.4E-06 57.6 8.1 36 207-242 142-178 (461)
422 PF06068 TIP49: TIP49 C-termin 93.1 0.13 2.9E-06 56.9 5.3 59 183-241 22-83 (398)
423 TIGR02524 dot_icm_DotB Dot/Icm 93.1 0.13 2.8E-06 58.5 5.5 109 208-327 134-244 (358)
424 KOG0737 AAA+-type ATPase [Post 93.1 0.53 1.1E-05 52.0 9.8 55 184-238 91-157 (386)
425 PF10236 DAP3: Mitochondrial r 93.1 1.5 3.2E-05 49.0 13.8 48 342-389 258-306 (309)
426 COG1224 TIP49 DNA helicase TIP 93.1 0.15 3.2E-06 55.6 5.5 55 183-237 37-94 (450)
427 PRK12678 transcription termina 93.0 0.086 1.9E-06 61.7 4.0 96 207-305 415-517 (672)
428 PRK13948 shikimate kinase; Pro 93.0 0.076 1.7E-06 54.1 3.2 28 207-234 9-36 (182)
429 PF03266 NTPase_1: NTPase; In 93.0 0.077 1.7E-06 53.4 3.2 24 211-234 2-25 (168)
430 PRK13949 shikimate kinase; Pro 93.0 0.074 1.6E-06 53.7 3.1 24 210-233 3-26 (169)
431 cd01428 ADK Adenylate kinase ( 93.0 0.73 1.6E-05 47.7 10.7 22 211-232 2-23 (194)
432 PRK14531 adenylate kinase; Pro 93.0 0.48 1E-05 48.6 9.2 23 210-232 4-26 (183)
433 COG1428 Deoxynucleoside kinase 93.0 0.077 1.7E-06 54.0 3.1 26 208-233 4-29 (216)
434 PF00154 RecA: recA bacterial 93.0 0.28 6.1E-06 54.3 7.7 99 195-303 39-143 (322)
435 cd02025 PanK Pantothenate kina 93.0 0.068 1.5E-06 56.6 2.8 25 210-234 1-25 (220)
436 cd03246 ABCC_Protease_Secretio 92.9 0.23 5E-06 50.5 6.6 35 207-242 27-61 (173)
437 PRK04301 radA DNA repair and r 92.9 0.35 7.6E-06 54.4 8.8 38 195-232 89-126 (317)
438 cd00267 ABC_ATPase ABC (ATP-bi 92.9 0.16 3.5E-06 50.7 5.4 115 208-334 25-145 (157)
439 cd02024 NRK1 Nicotinamide ribo 92.9 0.065 1.4E-06 54.8 2.5 23 210-232 1-23 (187)
440 TIGR02322 phosphon_PhnN phosph 92.9 0.079 1.7E-06 54.2 3.1 25 209-233 2-26 (179)
441 TIGR00455 apsK adenylylsulfate 92.9 0.36 7.8E-06 49.6 8.1 28 207-234 17-44 (184)
442 TIGR03878 thermo_KaiC_2 KaiC d 92.9 0.15 3.2E-06 55.5 5.4 38 206-243 34-71 (259)
443 PRK05201 hslU ATP-dependent pr 92.9 0.12 2.5E-06 58.9 4.6 52 185-236 15-78 (443)
444 PRK14526 adenylate kinase; Pro 92.8 0.36 7.9E-06 50.6 8.1 22 211-232 3-24 (211)
445 PRK07132 DNA polymerase III su 92.8 5.9 0.00013 43.9 17.8 155 208-392 18-185 (299)
446 COG3910 Predicted ATPase [Gene 92.8 0.68 1.5E-05 46.1 9.1 24 207-230 36-59 (233)
447 TIGR01039 atpD ATP synthase, F 92.8 0.33 7.2E-06 56.2 8.3 95 207-304 142-250 (461)
448 KOG0735 AAA+-type ATPase [Post 92.8 0.52 1.1E-05 56.0 9.8 174 185-388 667-872 (952)
449 PRK01184 hypothetical protein; 92.8 0.29 6.4E-06 50.2 7.3 18 209-226 2-19 (184)
450 PF03205 MobB: Molybdopterin g 92.8 0.11 2.3E-06 50.6 3.7 34 209-242 1-35 (140)
451 PRK06217 hypothetical protein; 92.8 0.074 1.6E-06 54.6 2.8 24 210-233 3-26 (183)
452 COG0467 RAD55 RecA-superfamily 92.8 0.17 3.7E-06 55.2 5.9 45 199-243 14-58 (260)
453 COG1936 Predicted nucleotide k 92.8 0.075 1.6E-06 52.2 2.6 20 210-229 2-21 (180)
454 cd02023 UMPK Uridine monophosp 92.8 0.074 1.6E-06 55.5 2.8 23 210-232 1-23 (198)
455 PRK05439 pantothenate kinase; 92.8 0.13 2.8E-06 56.8 4.8 30 205-234 83-112 (311)
456 PF00158 Sigma54_activat: Sigm 92.8 0.11 2.4E-06 52.3 3.9 45 187-231 1-45 (168)
457 PRK10751 molybdopterin-guanine 92.8 0.12 2.6E-06 51.9 4.1 28 207-234 5-32 (173)
458 PF00006 ATP-synt_ab: ATP synt 92.8 0.13 2.9E-06 53.8 4.6 27 208-234 15-41 (215)
459 cd00464 SK Shikimate kinase (S 92.7 0.085 1.8E-06 52.3 3.1 23 211-233 2-24 (154)
460 COG0055 AtpD F0F1-type ATP syn 92.7 0.11 2.4E-06 56.8 4.0 44 207-250 146-189 (468)
461 PLN03187 meiotic recombination 92.7 0.18 3.9E-06 56.7 5.9 36 195-230 113-148 (344)
462 PRK11388 DNA-binding transcrip 92.7 1.3 2.8E-05 55.2 14.2 49 184-232 324-372 (638)
463 TIGR03575 selen_PSTK_euk L-ser 92.7 0.32 7E-06 54.5 7.8 23 211-233 2-24 (340)
464 TIGR01650 PD_CobS cobaltochela 92.7 0.16 3.5E-06 56.2 5.3 53 181-237 41-93 (327)
465 TIGR02238 recomb_DMC1 meiotic 92.7 0.18 3.9E-06 56.2 5.8 36 195-230 83-118 (313)
466 PF03969 AFG1_ATPase: AFG1-lik 92.6 0.27 5.8E-06 55.9 7.2 102 207-329 61-167 (362)
467 PF13481 AAA_25: AAA domain; P 92.6 0.098 2.1E-06 54.2 3.5 26 209-234 33-58 (193)
468 KOG0736 Peroxisome assembly fa 92.6 1.1 2.5E-05 53.8 12.3 48 188-235 404-458 (953)
469 COG1703 ArgK Putative periplas 92.6 0.13 2.8E-06 55.0 4.3 41 195-235 38-78 (323)
470 cd02021 GntK Gluconate kinase 92.6 0.08 1.7E-06 52.3 2.7 23 210-232 1-23 (150)
471 PRK10463 hydrogenase nickel in 92.6 0.17 3.8E-06 55.0 5.3 44 196-241 94-137 (290)
472 cd02020 CMPK Cytidine monophos 92.6 0.085 1.8E-06 51.8 2.8 24 210-233 1-24 (147)
473 PRK13946 shikimate kinase; Pro 92.5 0.089 1.9E-06 54.1 3.0 26 208-233 10-35 (184)
474 cd01135 V_A-ATPase_B V/A-type 92.5 0.32 7E-06 52.4 7.2 26 207-232 68-93 (276)
475 cd00071 GMPK Guanosine monopho 92.5 0.076 1.7E-06 51.5 2.3 26 210-235 1-26 (137)
476 TIGR02768 TraA_Ti Ti-type conj 92.5 0.66 1.4E-05 58.4 11.0 24 26-49 177-200 (744)
477 cd03230 ABC_DR_subfamily_A Thi 92.5 0.38 8.2E-06 48.9 7.5 35 207-242 25-59 (173)
478 COG2274 SunT ABC-type bacterio 92.4 0.32 7E-06 60.2 8.1 23 208-230 499-521 (709)
479 PRK15453 phosphoribulokinase; 92.4 0.17 3.8E-06 54.5 4.9 28 207-234 4-31 (290)
480 cd03217 ABC_FeS_Assembly ABC-t 92.3 0.37 8E-06 50.3 7.4 25 207-231 25-49 (200)
481 KOG0730 AAA+-type ATPase [Post 92.3 0.88 1.9E-05 54.0 10.8 175 185-386 184-386 (693)
482 PRK05057 aroK shikimate kinase 92.3 0.11 2.3E-06 52.8 3.2 25 209-233 5-29 (172)
483 TIGR02788 VirB11 P-type DNA tr 92.3 0.27 5.8E-06 55.1 6.6 110 208-330 144-254 (308)
484 PRK12339 2-phosphoglycerate ki 92.3 0.11 2.5E-06 53.6 3.4 25 208-232 3-27 (197)
485 TIGR01069 mutS2 MutS2 family p 92.3 0.38 8.3E-06 60.4 8.6 25 207-231 321-345 (771)
486 COG0703 AroK Shikimate kinase 92.2 0.11 2.4E-06 51.6 3.0 28 209-236 3-30 (172)
487 TIGR00176 mobB molybdopterin-g 92.2 0.13 2.8E-06 51.1 3.6 26 210-235 1-26 (155)
488 COG1102 Cmk Cytidylate kinase 92.2 0.11 2.4E-06 50.2 2.9 25 210-234 2-26 (179)
489 COG0563 Adk Adenylate kinase a 92.2 0.11 2.3E-06 52.8 3.0 23 210-232 2-24 (178)
490 PRK13975 thymidylate kinase; P 92.2 0.12 2.6E-06 53.8 3.4 26 209-234 3-28 (196)
491 PRK09435 membrane ATPase/prote 92.2 0.28 6E-06 54.9 6.5 31 205-235 53-83 (332)
492 PRK14530 adenylate kinase; Pro 92.2 0.11 2.4E-06 54.9 3.3 24 209-232 4-27 (215)
493 KOG1532 GTPase XAB1, interacts 92.1 0.16 3.6E-06 53.1 4.2 31 207-237 18-48 (366)
494 PF00625 Guanylate_kin: Guanyl 92.1 0.13 2.9E-06 52.7 3.6 35 208-242 2-36 (183)
495 COG0714 MoxR-like ATPases [Gen 92.1 0.15 3.3E-06 57.8 4.4 51 185-239 24-74 (329)
496 PF13504 LRR_7: Leucine rich r 92.0 0.084 1.8E-06 30.6 1.2 16 811-826 2-17 (17)
497 TIGR00764 lon_rel lon-related 92.0 0.15 3.3E-06 62.2 4.6 57 183-243 16-73 (608)
498 PRK14738 gmk guanylate kinase; 92.0 0.13 2.9E-06 53.8 3.6 29 203-231 8-36 (206)
499 PRK05342 clpX ATP-dependent pr 92.0 0.17 3.8E-06 58.5 4.8 50 186-235 72-135 (412)
500 PF00560 LRR_1: Leucine Rich R 92.0 0.075 1.6E-06 33.2 1.0 18 647-664 2-19 (22)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7e-130 Score=1264.56 Aligned_cols=980 Identities=32% Similarity=0.537 Sum_probs=749.1
Q ss_pred CCCCCCCCCCCCcccEEEccccccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccc
Q 001277 1 MASTSIQNAFHGKYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYA 80 (1109)
Q Consensus 1 ~~~~~~~~~~~~~~dvfis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~ 80 (1109)
||+||| +++.|+||||+||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.+++.+||++|+++|||||++||
T Consensus 1 ~~~~~~-~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya 78 (1153)
T PLN03210 1 MASSSS-SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA 78 (1153)
T ss_pred CCCCCC-CCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence 777775 44789999999999999999999999999999999999987 7999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhcc-CCceEEeEEeeccccccccccChhhHHHHHHHHHhhccHHHHHHHHHHHHHHhhccCccCCC
Q 001277 81 SSTWCLDELVKIVECKK-RDHEIFPIFYDVEPTAVRKQTTSFGEAFAKHEEAFKDNIEKLQKWRDALKVVANKSGWELKD 159 (1109)
Q Consensus 81 ~s~~c~~El~~~~~~~~-~~~~v~pv~~~v~p~~vr~~~~~~~~a~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~~ 159 (1109)
+|+||++||++|++|++ .++.|+||||+|||++||+|+|.||+||.+++++. ..+++++||+||+++|+++||++..
T Consensus 79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~ 156 (1153)
T PLN03210 79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQN 156 (1153)
T ss_pred cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCC
Confidence 99999999999999999 89999999999999999999999999999998753 4678999999999999999999876
Q ss_pred -CchhhhHhhHHHHHhhhc-cCCcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc
Q 001277 160 -SNESEFIDEIVNVISNKI-RTKPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD 237 (1109)
Q Consensus 160 -~~e~~~i~~iv~~i~~~l-~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1109)
++|+++|++||++|..++ .+++.+.+++|||+.+++++..+|..+.+++++|+||||||+||||||+++|+++..+|+
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 889999999999999999 667778899999999999999999877788999999999999999999999999999999
Q ss_pred ceEEeeec--hhhh---c-----ccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHHHHH
Q 001277 238 GSTFLANV--REKS---E-----KEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQLQ 307 (1109)
Q Consensus 238 ~~~~~~~~--~~~~---~-----~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~ 307 (1109)
+.+|+... .... . .......++++++.++....+.. . .....++++|++||+||||||||+.++|+
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~---~-~~~~~~~~~L~~krvLLVLDdv~~~~~l~ 312 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK---I-YHLGAMEERLKHRKVLIFIDDLDDQDVLD 312 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc---c-CCHHHHHHHHhCCeEEEEEeCCCCHHHHH
Confidence 99988542 1110 0 01113346667777766433321 1 12357888999999999999999999999
Q ss_pred HHHhcCCCCCCCcEEEEEeCCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 308 NLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 308 ~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
.+.....|+++|++||||||+++++..++++. +|+|+.|+++||++||+++||+...+++++++++++|+++|+|+||
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~--~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPL 390 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLRAHGIDH--IYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPL 390 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHHhcCCCe--EEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcH
Confidence 99998889999999999999999988776665 9999999999999999999999877777899999999999999999
Q ss_pred hHHHHhhhcCCCCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcH-HHHHHhhhhhcccCCCCHHHHHHHHHhCCCCccc
Q 001277 388 ALTVLGSFLNGRSVDLWRSTLKRLKKEPPNRIINILQISFDGLQD-LEKKIFLDVACFFKSWDRDHVEKILEGCGFSPVI 466 (1109)
Q Consensus 388 al~~l~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~ 466 (1109)
||+++|++|++++..+|+.+++++++.++..|..+|++||++|++ .+|.+|+++||||.+++.+.+..++..+++.+..
T Consensus 391 Al~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~ 470 (1153)
T PLN03210 391 GLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNI 470 (1153)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchh
Confidence 999999999999999999999999998888999999999999986 5999999999999999999999999999999999
Q ss_pred chHHhhhccCeeEeCCCeEehhHHHHHHhHhhhhccCCCCCCccccccchhhhhcccccccE------EEEccCCCCCCC
Q 001277 467 GIEVLIEKSLLTVDDGNRLWMHDLLQELGHQIVQRQSPEQPGKRSRIWRDEEVRHMLTENTL------VILNLKDCTSLT 540 (1109)
Q Consensus 467 ~l~~L~~~sLi~~~~~~~~~mHdlv~~~~~~i~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~------~~l~l~~~~~l~ 540 (1109)
+++.|+++|||++. .+++.|||++|+||++++++++ .+|++++++|.++++.+++..+++ +.+|++....+.
T Consensus 471 ~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~ 548 (1153)
T PLN03210 471 GLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH 548 (1153)
T ss_pred ChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee
Confidence 99999999999987 6789999999999999999998 789999999999999999887654 666655432111
Q ss_pred CC-CCCCCCC-------------------------------cceEEEecCCCCCCcccccccCCcCCcceeeccccCCcc
Q 001277 541 TL-PGKISMK-------------------------------SLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEE 588 (1109)
Q Consensus 541 ~l-~~~~~l~-------------------------------~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~ 588 (1109)
.- ..+..|+ +||.|+|.+++ ++.+ |..+ .+.+|+.|++.++.++.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~l-P~~f-~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCM-PSNF-RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCC-CCcC-CccCCcEEECcCccccc
Confidence 00 0122233 36666666665 5555 3322 35566666666666666
Q ss_pred ccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCc-cCcccCCcccCC
Q 001277 589 LPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGT-SIAEVPSSIELL 667 (1109)
Q Consensus 589 l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~-~i~~lp~~i~~l 667 (1109)
+|.++..+++|+.|+|++|..++.+|. ++.+++|++|+|++|..+..+|..++++++|+.|++++| .+..+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 666666666666666666666666665 566666666666666666666666666666666666653 455566544 56
Q ss_pred CCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCC-------------------------------C
Q 001277 668 TGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQV-------------------------------E 716 (1109)
Q Consensus 668 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l-------------------------------~ 716 (1109)
++|+.|++++|..+..+|.. .++|++|++++|. +..+|..+ .+ +
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 66666666666666555542 3455566665554 23344322 12 2
Q ss_pred CccEEecCCCc-ccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCC
Q 001277 717 SLEELDISGTA-IRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDC 795 (1109)
Q Consensus 717 ~L~~L~L~~~~-i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~ 795 (1109)
+|+.|+|++|. +..+|.+++++++|+.|+|++|.. +..+|..+ ++++|+.|+|++|
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~----------------------L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN----------------------LETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCC----------------------cCeeCCCC-CccccCEEECCCC
Confidence 34444444432 223344444444444444444432 22233333 5677888888887
Q ss_pred CCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCCC---CCcceEeccCCcccccccc
Q 001277 796 GLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQLP---SNLYEVQVNGCASLVTLSG 872 (1109)
Q Consensus 796 ~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~~~~C~~L~~l~~ 872 (1109)
... ..+|. ..++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..+ ++|+.+++.+|++|+.++.
T Consensus 836 ~~L-~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 836 SRL-RTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred Ccc-ccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 642 23443 2468999999999999999999999999999999999999998654 4677889999999987653
Q ss_pred cccc---------------cccccccccccccccccCcchhHHHHHHHHHhhcCCCCcceEEeeCCCCCCCCcccccCCc
Q 001277 873 ALKL---------------CKSKCTSINCIGSLKLAGNNGLAISMLREYLKAVSDPMKEFNIVVPGSEIPKWFMYQNEGS 937 (1109)
Q Consensus 873 ~~~~---------------~~~~~~~~~c~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~q~~g~ 937 (1109)
.... ......+.||. +|+... +++ .......+++||.++|+||.||..|+
T Consensus 912 ~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~-~L~~~a-----------~l~---~~~~~~~~~l~g~evp~~f~hr~~g~ 976 (1153)
T PLN03210 912 NGSPSEVAMATDNIHSKLPSTVCINFINCF-NLDQEA-----------LLQ---QQSIFKQLILSGEEVPSYFTHRTTGA 976 (1153)
T ss_pred CCCchhhhhhcccccccCCchhcccccccc-CCCchh-----------hhc---ccccceEEECCCccCchhccCCcccc
Confidence 2110 00112355665 442111 111 11223357899999999999999999
Q ss_pred eEE-EEcCCCCCCCCceeEEEEEEEEecCCCCC--ccceeeeeeeeEecCCceeEEeeeccCCCCCCCeEEEEEEehhhh
Q 001277 938 SIT-VTRPSYLYNMNKVVGYAICCVFHVPKRST--RSHLIQMLPCFFNGSGVHYFIRFKEKFGQGRSDHLWLLYLSREAC 1014 (1109)
Q Consensus 938 si~-~~lp~~~~~~~~~~g~~~c~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 1014 (1109)
+++ +++|+.|. ...|+||++|+|+.+..... ....++|. |++.+..+..++ ...++|+|+.|....++
T Consensus 977 sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~-c~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l 1047 (1153)
T PLN03210 977 SLTNIPLLHISP-CQPFFRFRACAVVDSESFFIISVSFDIQVC-CRFIDRLGNHFD-------SPYQPHVFSVTKKGSHL 1047 (1153)
T ss_pred eeeeeccCCccc-CCCccceEEEEEEecCccccCCCceeEEEE-EEEECCCCCccc-------cCCCceeEeeeccccce
Confidence 998 99999887 67799999999998765322 23466776 778776555433 22445555555443221
Q ss_pred h---------h---hcCCCCcceEEEEEeecCC-CCcEEEEeeeEEEeeCch
Q 001277 1015 R---------E---SNWHFESNHIELAFKPMSG-PGLKVTRCGIHPVYMDEV 1053 (1109)
Q Consensus 1015 ~---------~---~~~~~~~~~~~~~f~~~~~-~~~~vk~cGv~~iy~~~~ 1053 (1109)
. . ......+.|+.+.|++... ..++||+|||+++|+++.
T Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1048 VIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred EEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCC
Confidence 1 0 0111235677777765433 347999999999996653
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-56 Score=548.25 Aligned_cols=640 Identities=28% Similarity=0.366 Sum_probs=392.0
Q ss_pred ccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHH---HhccccceEEeeechhhhcccCChHHHHHHHHH
Q 001277 188 VGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDL---ISHEFDGSTFLANVREKSEKEGSVVSLQKQLLS 264 (1109)
Q Consensus 188 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1109)
||.+.-++++...|..+.. ++++|+||||+||||||+.++|+ +..+|+..+|+. ++.++. ...++.+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~-~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFT-TRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Eccccc-HHhHHHHHHH
Confidence 9999999999999985543 99999999999999999999983 678999999997 344454 8889999999
Q ss_pred HHhhcc-CcccccccccHHHHHHHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhhHh-hCCCccce
Q 001277 265 DLLKLA-DISIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVA-HEVDEEHI 342 (1109)
Q Consensus 265 ~l~~~~-~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~ 342 (1109)
.+.... .......++....|.+.|.+||+||||||||+..+|+.+..+++....|++|++|||++.|+.. +++.. .
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~--~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY--P 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc--c
Confidence 887322 1111333678889999999999999999999999999999999888889999999999999887 66544 8
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHhCCCchhHHHHhhhcCCC-CHHHHHHHHHHhhcC-----C
Q 001277 343 YNLEVLSNDEALQLFSMKAFKTR-QPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGR-SVDLWRSTLKRLKKE-----P 415 (1109)
Q Consensus 343 ~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~-~~~~w~~~l~~l~~~-----~ 415 (1109)
++++.|+++|||+||++.+|... ...+..++++++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... +
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 99999999999999999998763 3335588999999999999999999999999874 778999999987654 1
Q ss_pred --CChhHHHHHhhhcCCcHHHHHHhhhhhcccCCCC--HHHHHHHHHhCCCCcc------------cchHHhhhccCeeE
Q 001277 416 --PNRIINILQISFDGLQDLEKKIFLDVACFFKSWD--RDHVEKILEGCGFSPV------------IGIEVLIEKSLLTV 479 (1109)
Q Consensus 416 --~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~~~------------~~l~~L~~~sLi~~ 479 (1109)
.+.|..+|..||+.||++.|.||+|||.||+++. .+.+...|.++|+... ..++.|++++|+..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 3578899999999999999999999999999986 5789999999996532 23899999999987
Q ss_pred eCC----CeEehhHHHHHHhHhhhhccCCCCCCccccccchhhhhcccccccEEEEccCCCCCCCCCCCCCCCCcceEEE
Q 001277 480 DDG----NRLWMHDLLQELGHQIVQRQSPEQPGKRSRIWRDEEVRHMLTENTLVILNLKDCTSLTTLPGKISMKSLKTLV 555 (1109)
Q Consensus 480 ~~~----~~~~mHdlv~~~~~~i~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~l~l~~~~~l~~l~~~~~l~~L~~L~ 555 (1109)
... ..+.|||++|+||..++...+...... ..... ..+...|........|.+.
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~---iv~~~-------------------~~~~~~~~~~~~~~~rr~s 529 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEENQ---IVSDG-------------------VGLSEIPQVKSWNSVRRMS 529 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccce---EEECC-------------------cCccccccccchhheeEEE
Confidence 642 579999999999999988443211110 00000 0111122222233334444
Q ss_pred ecCCCCCCcccccccCCcCCcceeeccccC--Ccccccc-ccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCC
Q 001277 556 LSGCLKLTKKCLEFAGSMNDLSELFLDRTT--IEELPLS-IQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCS 632 (1109)
Q Consensus 556 l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~--l~~l~~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 632 (1109)
+.++. +..+ +....+ +.|+.|-+..+. +..++.. +..++.|++|||++|..+..+|..+++|-+|++|+|+++
T Consensus 530 ~~~~~-~~~~-~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t- 605 (889)
T KOG4658|consen 530 LMNNK-IEHI-AGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT- 605 (889)
T ss_pred Eeccc-hhhc-cCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-
Confidence 33332 2111 111111 124444444332 2222221 344555555555555555555555555555555555542
Q ss_pred CCCcccccccCCCCCcEEeccCccCccc-CCcccCCCCCcEEeeeccC--CCcccCCCCCCCCCCcEEEecCCCCCcccC
Q 001277 633 KLKKFPESLGSMKDLMELFLDGTSIAEV-PSSIELLTGLQLLNLNNCS--NLVRLPSCINGLRSLKTLNLSGCSKLQNVP 709 (1109)
Q Consensus 633 ~~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~--~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 709 (1109)
.+..+|..+++++.|.+|++..+.-... |..+..+++|++|.+..-. .....-..+.++.+|+.|....++. .+-
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~ 683 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLL 683 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhH
Confidence 3334555555555555555544433222 2222335555555544321 0011111223344444444433322 111
Q ss_pred cccCCCCCcc----EEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccc-------ccccccccCCCccccC
Q 001277 710 ETLGQVESLE----ELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHF-------PFNLMGQRSYPVALML 778 (1109)
Q Consensus 710 ~~l~~l~~L~----~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~-------~~~~l~~~~~~~~~l~ 778 (1109)
+.+..++.|. .+.+.++.....+.++..+.+|+.|.+.+|........+.... .+.............+
T Consensus 684 e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 684 EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 1122222222 2222333444445556666666666666665432211110000 0000000011111112
Q ss_pred CCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCCCCCcce
Q 001277 779 PSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQLPSNLYE 858 (1109)
Q Consensus 779 ~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~lp~~L~~ 858 (1109)
.+.--.++|+.|.+..|...+..+| ....+..++.+.+..+.+..++ ...++.+.+.+...|-..+.|+.
T Consensus 764 ~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l~~~i~~f~~~~~l~---------~~~~l~~l~~i~~~~l~~~~l~~ 833 (889)
T KOG4658|consen 764 TWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLELKELILPFNKLEGLR---------MLCSLGGLPQLYWLPLSFLKLEE 833 (889)
T ss_pred chhhccCcccEEEEecccccccCCC-HHHHhhhcccEEecccccccce---------eeecCCCCceeEecccCccchhh
Confidence 2233456777777777776443333 3444444544444444333222 01122222222222222234777
Q ss_pred EeccCCcccccccccc
Q 001277 859 VQVNGCASLVTLSGAL 874 (1109)
Q Consensus 859 L~~~~C~~L~~l~~~~ 874 (1109)
+.+..||++..+|...
T Consensus 834 ~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 834 LIVEECPKLGKLPLLS 849 (889)
T ss_pred eehhcCcccccCcccc
Confidence 7777777777776543
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=315.05 Aligned_cols=156 Identities=26% Similarity=0.459 Sum_probs=143.7
Q ss_pred CCCCCCCcccEEEccccccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhh
Q 001277 6 IQNAFHGKYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWC 85 (1109)
Q Consensus 6 ~~~~~~~~~dvfis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c 85 (1109)
||++...+|||||||||+|+|++|++||+++|+++||+||+|++++.+|+.|.++|.+||++|+++||||||+|++|.||
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCceEEeEEeeccccccccc-cChhhHHHHHHHHHhhccHHHHHHHHHHHHHHhhccCccCC--CCch
Q 001277 86 LDELVKIVECKKRDHEIFPIFYDVEPTAVRKQ-TTSFGEAFAKHEEAFKDNIEKLQKWRDALKVVANKSGWELK--DSNE 162 (1109)
Q Consensus 86 ~~El~~~~~~~~~~~~v~pv~~~v~p~~vr~~-~~~~~~a~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~--~~~e 162 (1109)
++||++|+++. ..|+||||+|+|++||+| .|. ...+++++||+||+++|+++|+++. .++|
T Consensus 99 LdEL~~I~e~~---~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e 162 (187)
T PLN03194 99 LHELALIMESK---KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNW 162 (187)
T ss_pred HHHHHHHHHcC---CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCH
Confidence 99999999875 479999999999999997 443 1358899999999999999999765 4889
Q ss_pred hhhHhhHHHHHhhhc
Q 001277 163 SEFIDEIVNVISNKI 177 (1109)
Q Consensus 163 ~~~i~~iv~~i~~~l 177 (1109)
+++|++|++.|.+++
T Consensus 163 ~e~i~~iv~~v~k~l 177 (187)
T PLN03194 163 SEVVTMASDAVIKNL 177 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998887
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.4e-35 Score=327.77 Aligned_cols=269 Identities=32% Similarity=0.518 Sum_probs=209.8
Q ss_pred chhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHH--HhccccceEEeeechhhhcccCChHHHHHHHHHHHh
Q 001277 190 IDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDL--ISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL 267 (1109)
Q Consensus 190 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 267 (1109)
||.++++|.+.|....++.++|+|+||||+||||||++++++ +..+|+.++|+.... ... ...+...++.++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~~~-~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----NPS-LEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-----SC-CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----ccc-ccccccccccccc
Confidence 789999999999876678999999999999999999999987 889998888876322 222 5677788888887
Q ss_pred hccC-c-ccccccccHHHHHHHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhhHhhCCCccceEEc
Q 001277 268 KLAD-I-SIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNL 345 (1109)
Q Consensus 268 ~~~~-~-~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l 345 (1109)
.... . ...+.++....+.+.|.++++||||||||+...|+.+...++.+..|++||||||+..++...... ...|+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4321 1 235667788999999999999999999999999988887777677899999999999887665432 348999
Q ss_pred CCCCHHHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHhCCCchhHHHHhhhcCC-CCHHHHHHHHHHhhcCC------CC
Q 001277 346 EVLSNDEALQLFSMKAFKTR-QPMGEYVELSKRVLKYAGGLPLALTVLGSFLNG-RSVDLWRSTLKRLKKEP------PN 417 (1109)
Q Consensus 346 ~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~-~~~~~w~~~l~~l~~~~------~~ 417 (1109)
++|+++||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+. .+..+|+.+++.+.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998755 233445678999999999999999999999954 26788999988765442 46
Q ss_pred hhHHHHHhhhcCCcHHHHHHhhhhhcccCCCC--HHHHHHHHHhCCCCc
Q 001277 418 RIINILQISFDGLQDLEKKIFLDVACFFKSWD--RDHVEKILEGCGFSP 464 (1109)
Q Consensus 418 ~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~~ 464 (1109)
.+..++..||+.|+++.|+||+++|+||.++. .+.++.+|.++|+..
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 78999999999999999999999999999875 788999999987654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=8.9e-26 Score=294.43 Aligned_cols=317 Identities=24% Similarity=0.262 Sum_probs=150.5
Q ss_pred CCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCc-cccccccccCCCcEEeCCCCcCCccccccccccCcCcEE
Q 001277 548 MKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE-ELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNL 626 (1109)
Q Consensus 548 l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 626 (1109)
+++|++|++++|. +....|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|
T Consensus 139 l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 3444444444443 22222333444444444444444433 334444444444444444444333444444444444444
Q ss_pred EecCCCCCCcccccccCCCCCcEEeccCccCc-ccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCC
Q 001277 627 TLSGCSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKL 705 (1109)
Q Consensus 627 ~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 705 (1109)
+|++|.....+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|.....+|..+.++++|++|++++|...
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 44444444444444444444444444444443 33444444444444444444433344444444444444444444443
Q ss_pred cccCcc------------------------cCCCCCccEEecCCCcccC-CCccccccCCCcEEEccCCCCCCCCCC-cc
Q 001277 706 QNVPET------------------------LGQVESLEELDISGTAIRR-PPSSIFVMNNLKTLSFSGCNGPPSSTS-WH 759 (1109)
Q Consensus 706 ~~lp~~------------------------l~~l~~L~~L~L~~~~i~~-~p~~l~~l~~L~~L~L~~c~~~~~~~~-~~ 759 (1109)
+.+|.. +..+++|+.|+|++|.+.+ +|..++.+++|+.|++++|......+. +.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 444444 4444444444444444432 234444444444444444432221111 01
Q ss_pred cccccccccccCCCc-cccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc-ccchhhhccCCCCc
Q 001277 760 WHFPFNLMGQRSYPV-ALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQ 837 (1109)
Q Consensus 760 ~~~~~~~l~~~~~~~-~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~~~l~~L~~ 837 (1109)
....+..+....+.+ ..+|..+..+++|+.|+|++|++ .+.+|..+..+++|+.|+|++|+++ .+|..+..+++|+.
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF-SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe-eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 111122222222222 23344556666677777776666 3456666666777777777777666 34555566777777
Q ss_pred eeccCCcCcCcCCCCC--CCcceEeccCCcc
Q 001277 838 LDLEDCKRLQSMPQLP--SNLYEVQVNGCAS 866 (1109)
Q Consensus 838 L~L~~c~~L~~lp~lp--~~L~~L~~~~C~~ 866 (1109)
|++++|.....+|... ++|+.|++++|.-
T Consensus 457 L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 457 LSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EECcCceeeeecCcccccccceEEECcCCcc
Confidence 7777777666666432 4677777776653
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.5e-25 Score=292.34 Aligned_cols=341 Identities=23% Similarity=0.241 Sum_probs=233.1
Q ss_pred EEEccCCCCCCCCCCC-CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCc-cccccccccCCCcEEeCCC
Q 001277 529 VILNLKDCTSLTTLPG-KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE-ELPLSIQHLTGLVLLNLKD 606 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~L~~ 606 (1109)
..|+++.|.....+|. +..+++|++|++++|. +....|..+..+.+|++|++++|.+. .+|..+..+++|++|++++
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK-LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCe-eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 3455554433333332 4456666666666665 43333555556666677777666655 4555666666777777766
Q ss_pred CcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCc-ccCCcccCCCCCcEEeeeccCCCcccC
Q 001277 607 CKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSSIELLTGLQLLNLNNCSNLVRLP 685 (1109)
Q Consensus 607 ~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp 685 (1109)
|.....+|..+..+++|++|+|++|.....+|..++.+++|+.|++++|.+. .+|.++..+++|+.|++++|.....+|
T Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence 6655566666666677777777766666666666667777777777776665 456666666677777777766666666
Q ss_pred CCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCCCCCccccccc
Q 001277 686 SCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPF 764 (1109)
Q Consensus 686 ~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~ 764 (1109)
..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+.+. |..+..+++|+.|++++|......+.......+
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L 477 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL 477 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccc
Confidence 6667777777777777776667777777777777777777777654 455566777888888777755444433333445
Q ss_pred ccccccCCCcc-ccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc-ccchhhhccCCCCceeccC
Q 001277 765 NLMGQRSYPVA-LMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLED 842 (1109)
Q Consensus 765 ~~l~~~~~~~~-~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~L~~ 842 (1109)
..+....+.+. ..|..+.++++|+.|+|++|.+ .+.+|..++.+++|++|+|++|.++ .+|..+..+++|+.|+|++
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCcc-eeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence 55555554443 4566678888899999998888 5678888888899999999999888 5778888889999999998
Q ss_pred CcCcCcCCCC---CCCcceEeccCCccccccc
Q 001277 843 CKRLQSMPQL---PSNLYEVQVNGCASLVTLS 871 (1109)
Q Consensus 843 c~~L~~lp~l---p~~L~~L~~~~C~~L~~l~ 871 (1109)
|.....+|.. .++|+.|++++|.-...+|
T Consensus 557 N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 8888888742 2578888888887655555
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.6e-26 Score=254.12 Aligned_cols=324 Identities=21% Similarity=0.311 Sum_probs=203.7
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCc--cccccccccCCCcEEeCCCCcCCccccccccccCc
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE--ELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQC 622 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 622 (1109)
+..+.+|.+|.+.+|. +..+ ...+..++.|+.+.+..|++. .+|..+.++..|.+|||++| .+++.|..+...++
T Consensus 51 L~~lqkLEHLs~~HN~-L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQ-LISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKN 127 (1255)
T ss_pred HHHHhhhhhhhhhhhh-hHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcC
Confidence 3345556666666655 4444 222445555666666665555 55666666666666666664 35566665666666
Q ss_pred CcEEEecCCCCCCcccc-cccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecC
Q 001277 623 LKNLTLSGCSKLKKFPE-SLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSG 701 (1109)
Q Consensus 623 L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 701 (1109)
+-+|+|++|+ +..+|. .+-++..|-.|+|++|.+..+|+.+..|.+|++|.|++|.....--..+..+++|++|.+++
T Consensus 128 ~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 128 SIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred cEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 6666666643 333443 33456666666666666666666666666666666666553211111122355666666665
Q ss_pred CCC-CcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCC
Q 001277 702 CSK-LQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPS 780 (1109)
Q Consensus 702 c~~-l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 780 (1109)
... +..+|..+..+.||+.++++.|.+..+|..+.++++|+.|+|++|..+........-..++.+.+..+.+..+|..
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 442 3456666666666666666666666666666666666666666666443322222222333444444556667778
Q ss_pred CCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCC---CCCCcc
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ---LPSNLY 857 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~---lp~~L~ 857 (1109)
+..++.|+.|.+.+|++.-.++|+.+|.|..|+.+..++|++.-+|.++..|.+|+.|.|+.| .|..+|+ +.+.|+
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLK 365 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcc
Confidence 888888888888888887778888888888888888888888888888888888888888644 4556664 446788
Q ss_pred eEeccCCccccccccc
Q 001277 858 EVQVNGCASLVTLSGA 873 (1109)
Q Consensus 858 ~L~~~~C~~L~~l~~~ 873 (1109)
.|++...++|..-|.+
T Consensus 366 vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 366 VLDLRENPNLVMPPKP 381 (1255)
T ss_pred eeeccCCcCccCCCCc
Confidence 8888888888765543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-24 Score=238.51 Aligned_cols=388 Identities=20% Similarity=0.229 Sum_probs=210.8
Q ss_pred EEEccCCCCCCC--CCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCC
Q 001277 529 VILNLKDCTSLT--TLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLK 605 (1109)
Q Consensus 529 ~~l~l~~~~~l~--~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~ 605 (1109)
..||+++.+ +. .+..+.++++|+.+.+..|. ++.+ |.+.+...+|+.|+|.+|.|.++.. .+..++.|+.|||+
T Consensus 81 ~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~-Lt~I-P~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNE-LTRI-PRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccc-cccCcHHHHhcCCcceeeeeccch-hhhc-ccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 345655432 22 22335677778888877776 7776 7777777778888887777776643 56677777788887
Q ss_pred CCcCCcccc-ccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCcc
Q 001277 606 DCKNLKSLS-HTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVR 683 (1109)
Q Consensus 606 ~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~ 683 (1109)
.|. +..+| .++..-.++++|+|++|.....--..|.++.+|..|.|+.|.|+.+|. ++.+|++|+.|+|..|..-..
T Consensus 158 rN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 753 34443 235555678888888877666666677777778888888888887774 455578888887776543211
Q ss_pred cCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCC-CCCcccc
Q 001277 684 LPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPS-STSWHWH 761 (1109)
Q Consensus 684 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~-~~~~~~~ 761 (1109)
--..+..|++|+.|.|..|....--...|-.+.++++|+|..|++..+ -.++..++.|+.|+|+.|.+... ...|...
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 112344555555555555443222222333445555555555555554 33455555555555555543222 1223333
Q ss_pred cccccccccCCCccccC-CCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcc-cc---hhhhccCCCC
Q 001277 762 FPFNLMGQRSYPVALML-PSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVT-LP---ASINSLFNLG 836 (1109)
Q Consensus 762 ~~~~~l~~~~~~~~~l~-~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~-lp---~~~~~l~~L~ 836 (1109)
..+..+.+..+.+..++ ..|..+..|++|+|++|.+. ..-...+..+++|++|+|++|.++. +. ..+..+++|+
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 33444444443333332 23455555555666555542 1112234455566666666665552 11 2344566666
Q ss_pred ceeccCCcCcCcCCC----CCCCcceEeccCCccccccc-ccccccccccccccccccccccC---cchhHHHHHHHHHh
Q 001277 837 QLDLEDCKRLQSMPQ----LPSNLYEVQVNGCASLVTLS-GALKLCKSKCTSINCIGSLKLAG---NNGLAISMLREYLK 908 (1109)
Q Consensus 837 ~L~L~~c~~L~~lp~----lp~~L~~L~~~~C~~L~~l~-~~~~~~~~~~~~~~c~~~l~~~~---~~~~~~~~~~~~~~ 908 (1109)
.|++.+| ++++||. -.++|+.|++.+.+ +.++. +.+..... ++|-+.+ -++..++|+.+|+.
T Consensus 396 kL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~L--------k~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 396 KLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMEL--------KELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred heeecCc-eeeecchhhhccCcccceecCCCCc-ceeecccccccchh--------hhhhhcccceEEeccHHHHHHHHH
Confidence 6666554 3445541 11355555555443 22221 11111100 0221211 14567899999987
Q ss_pred hcCCCCcceEEeeCCCCCCCCcccccC
Q 001277 909 AVSDPMKEFNIVVPGSEIPKWFMYQNE 935 (1109)
Q Consensus 909 ~~~~~~~~~~~~~pg~~iP~wf~~q~~ 935 (1109)
...+... +.--..-|+|+..|..
T Consensus 466 ~~~lq~s----v~a~CayPe~Lad~~i 488 (873)
T KOG4194|consen 466 RRKLQSS----VIAKCAYPEPLADQSI 488 (873)
T ss_pred hcccccc----eeeeccCCccccccee
Confidence 6544432 2333478999988764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.4e-25 Score=245.09 Aligned_cols=279 Identities=28% Similarity=0.377 Sum_probs=240.4
Q ss_pred CCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccc-cccCCCcEEeCCCCcCCccccccccccCc
Q 001277 544 GKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSI-QHLTGLVLLNLKDCKNLKSLSHTLRRLQC 622 (1109)
Q Consensus 544 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 622 (1109)
.+..+..|..|+|+.|. ++.. |..+...+++.+|+|++|+|+.+|.++ -+|..|-+|||++| .+..+|..+..+.+
T Consensus 98 diF~l~dLt~lDLShNq-L~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQ-LREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSM 174 (1255)
T ss_pred hhcccccceeeecchhh-hhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence 35678889999999987 8877 777888889999999999999999864 58889999999986 57888888999999
Q ss_pred CcEEEecCCCCCCcccccccCCCCCcEEeccCccCc--ccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEec
Q 001277 623 LKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA--EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLS 700 (1109)
Q Consensus 623 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 700 (1109)
|++|+|++|.....--..+..|++|+.|.+++++-+ .+|.++..+.+|..++++. +++..+|..+.++.+|+.|+||
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccC
Confidence 999999998655443445567888999999988654 7899999999999999986 5678899999999999999999
Q ss_pred CCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCC
Q 001277 701 GCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPS 780 (1109)
Q Consensus 701 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 780 (1109)
+|. ++.+.-..+...+|++|+++.|+++.+|+.+++++.|+.|.+.+|+..- ..+|+.
T Consensus 254 ~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F---------------------eGiPSG 311 (1255)
T KOG0444|consen 254 GNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF---------------------EGIPSG 311 (1255)
T ss_pred cCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc---------------------cCCccc
Confidence 986 4445555667788999999999999999999999999999998876432 346888
Q ss_pred CCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCC
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMP 850 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp 850 (1109)
++.+.+|+.+..++|.+ ..+|..++.+..|+.|.|+.|.+..+|..|.-|+.|+.|||..|++|.--|
T Consensus 312 IGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 99999999999999998 459999999999999999999999999999999999999999999997655
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=8.1e-22 Score=256.97 Aligned_cols=287 Identities=31% Similarity=0.443 Sum_probs=225.8
Q ss_pred EEEEccCCCCCCCCCC-CCCCCCcceEEEecCCCCCCcccccccCCcCCcceeecc-ccCCccccccccccCCCcEEeCC
Q 001277 528 LVILNLKDCTSLTTLP-GKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLD-RTTIEELPLSIQHLTGLVLLNLK 605 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~l~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~-~~~l~~l~~~~~~l~~L~~L~L~ 605 (1109)
...|+++.+. +..++ +...+++|+.|++++|..++.+ |. +..+++|+.|+|. ++.+..+|.+++++++|+.|+++
T Consensus 613 L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i-p~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 613 LVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEI-PD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcC-Cc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 3556665542 44443 3456788888888888767666 55 5667788888888 45677888888888888888888
Q ss_pred CCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCc---
Q 001277 606 DCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLV--- 682 (1109)
Q Consensus 606 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~--- 682 (1109)
+|..+..+|..+ ++++|++|+|++|..+..+|.. ..+|++|+|++|.+..+|..+ .+++|+.|.+.+|....
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccc
Confidence 888888888755 6888888888888887777764 457888889999888888765 57888888887754211
Q ss_pred ---ccCC-CCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCC-cccCCCccccccCCCcEEEccCCCCCCCCCC
Q 001277 683 ---RLPS-CINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGT-AIRRPPSSIFVMNNLKTLSFSGCNGPPSSTS 757 (1109)
Q Consensus 683 ---~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~ 757 (1109)
.++. .....++|+.|+|++|..+..+|..++++++|+.|+|++| .+..+|..+ ++++|+.|++++|......
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~-- 841 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF-- 841 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc--
Confidence 1111 1223578999999999999999999999999999999987 577778776 7999999999999754321
Q ss_pred cccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCC-CCcccchhhhccCCCC
Q 001277 758 WHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQN-NFVTLPASINSLFNLG 836 (1109)
Q Consensus 758 ~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~~~~l~~L~ 836 (1109)
|. ..++|+.|+|++|.+.. +|.++..+++|+.|+|++| ++..+|..+..+++|+
T Consensus 842 --------------------p~---~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 842 --------------------PD---ISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred --------------------cc---cccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 11 13589999999999954 8999999999999999996 7889999999999999
Q ss_pred ceeccCCcCcCcCC
Q 001277 837 QLDLEDCKRLQSMP 850 (1109)
Q Consensus 837 ~L~L~~c~~L~~lp 850 (1109)
.|++++|..|..++
T Consensus 897 ~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 897 TVDFSDCGALTEAS 910 (1153)
T ss_pred eeecCCCccccccc
Confidence 99999999998654
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=5.4e-22 Score=218.24 Aligned_cols=319 Identities=19% Similarity=0.192 Sum_probs=241.3
Q ss_pred cceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEec
Q 001277 550 SLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLS 629 (1109)
Q Consensus 550 ~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 629 (1109)
.-+.|++++|. +..+.+.++.++++|+++++.+|.++.+|...+...+|+.|+|.+|..-..-...++.++.|+.|||+
T Consensus 79 ~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 46789999998 88887888899999999999999999999988888899999999986555555668889999999999
Q ss_pred CCCCCCcccccccCCCCCcEEeccCccCcccC-CcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCccc
Q 001277 630 GCSKLKKFPESLGSMKDLMELFLDGTSIAEVP-SSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNV 708 (1109)
Q Consensus 630 ~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 708 (1109)
.|.....--..+..-.++++|+|++|.|+.+- ..+..+.+|..|.|+.|....--+..+.+|+.|+.|+|..|..-..-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 97544433345666679999999999999875 45888899999999997655444456667999999999998743322
Q ss_pred CcccCCCCCccEEecCCCcccCCC-ccccccCCCcEEEccCCCCCCCCC-CcccccccccccccCCCcccc-CCCCCCCC
Q 001277 709 PETLGQVESLEELDISGTAIRRPP-SSIFVMNNLKTLSFSGCNGPPSST-SWHWHFPFNLMGQRSYPVALM-LPSLSGLH 785 (1109)
Q Consensus 709 p~~l~~l~~L~~L~L~~~~i~~~p-~~l~~l~~L~~L~L~~c~~~~~~~-~~~~~~~~~~l~~~~~~~~~l-~~~l~~l~ 785 (1109)
--.|..+++|+.|.|..|.+..+. ..+..+.++++|+|..|....... .++++..++.+....+.+..+ +...+-++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 346788999999999999999984 456679999999999988655433 234555566666655555444 44556677
Q ss_pred CCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch-hhhccCCCCceeccCCcCcCcCCC------CCCCcce
Q 001277 786 SLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLEDCKRLQSMPQ------LPSNLYE 858 (1109)
Q Consensus 786 ~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~c~~L~~lp~------lp~~L~~ 858 (1109)
+|+.|+|++|+++. .-+..+..|..|++|+|++|.+..+.. .+..+++|+.|||++|..-..|.. -.++|+.
T Consensus 318 kL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 318 KLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred cceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 78888888887743 334566777788888888888777764 356778888888887765444331 1256777
Q ss_pred EeccCCccccccc
Q 001277 859 VQVNGCASLVTLS 871 (1109)
Q Consensus 859 L~~~~C~~L~~l~ 871 (1109)
|.+.|.. |+.++
T Consensus 397 L~l~gNq-lk~I~ 408 (873)
T KOG4194|consen 397 LRLTGNQ-LKSIP 408 (873)
T ss_pred eeecCce-eeecc
Confidence 7777653 55554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.9e-22 Score=212.80 Aligned_cols=198 Identities=29% Similarity=0.365 Sum_probs=157.1
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCc
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLK 624 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 624 (1109)
...+.+|+.|+.+.+. ++.. ++.++.+-.|..|+..+|++..+|..+.++.+|..|++.+++ ++.+|...-+++.|+
T Consensus 110 i~s~~~l~~l~~s~n~-~~el-~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNE-LKEL-PDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLK 186 (565)
T ss_pred Hhhhhhhhhhhccccc-eeec-CchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHH
Confidence 3455667777777666 5555 444666666777777777777777777777777777777764 444444444578888
Q ss_pred EEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCC-CCCCCcEEEecCCC
Q 001277 625 NLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCIN-GLRSLKTLNLSGCS 703 (1109)
Q Consensus 625 ~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~ 703 (1109)
+||... +.++.+|+.++.|.+|.-|+|..|.|..+| .|+.+..|++|+++. +.++.+|..++ ++++|.+|+|..|.
T Consensus 187 ~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 187 HLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred hcccch-hhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccc
Confidence 888766 367788888888888888888888888888 688888888888876 45677787665 89999999999975
Q ss_pred CCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCC
Q 001277 704 KLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCN 750 (1109)
Q Consensus 704 ~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~ 750 (1109)
+.++|+.+.-+.+|++||+++|.++.+|.+++++ +|+.|.+.||.
T Consensus 264 -lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 264 -LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred -cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 7889999999999999999999999999999999 99999999885
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=3.5e-22 Score=210.86 Aligned_cols=262 Identities=31% Similarity=0.393 Sum_probs=191.1
Q ss_pred ceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecC
Q 001277 551 LKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSG 630 (1109)
Q Consensus 551 L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 630 (1109)
|..|.+++|. +..+.++ ...+..|.+|++..+++.++|.+++.+..++.|+.+++ ++..+|..+..+.+|..|+.+.
T Consensus 47 l~~lils~N~-l~~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHND-LEVLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCc-hhhccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccc
Confidence 4445555554 4444233 45555677777777777777777777777777777775 4566776677777777777777
Q ss_pred CCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCc
Q 001277 631 CSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPE 710 (1109)
Q Consensus 631 ~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 710 (1109)
| ....+|+.++.+..|+.|+..+|++.++|..++++.+|..|++.+|+.. .+|+..-+++.|++|+...| .++.+|+
T Consensus 124 n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N-~L~tlP~ 200 (565)
T KOG0472|consen 124 N-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSN-LLETLPP 200 (565)
T ss_pred c-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchh-hhhcCCh
Confidence 4 4556677777777778888888888888888888888888888876544 44443335788888877664 3677888
Q ss_pred ccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCC-CCCCCCCCE
Q 001277 711 TLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPS-LSGLHSLSK 789 (1109)
Q Consensus 711 ~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~L~~ 789 (1109)
.++.+.+|+.|+|..|.+..+| .+..+..|+.|+++.|... .+|.. ...+++|..
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-----------------------~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-----------------------MLPAEHLKHLNSLLV 256 (565)
T ss_pred hhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-----------------------hhHHHHhccccccee
Confidence 8888888888888888888887 6777778888877765422 12333 347788888
Q ss_pred EecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcC
Q 001277 790 LDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 790 L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~ 845 (1109)
|||.+|++.+ .|+.++.+.+|++|++++|.++++|.+++++ +|+.|.+.+|+.
T Consensus 257 LDLRdNklke--~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 257 LDLRDNKLKE--VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred eecccccccc--CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 8888888855 8888888888888888888888888888888 888888888863
No 14
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.77 E-value=1e-19 Score=178.48 Aligned_cols=132 Identities=37% Similarity=0.599 Sum_probs=113.8
Q ss_pred EEEccccccCccchHHHHHHHHHhC--CCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhhHHHHHHHH
Q 001277 16 AFLSFRGEDTRKSFTDHLYAALKNK--GIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWCLDELVKIV 93 (1109)
Q Consensus 16 vfis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c~~El~~~~ 93 (1109)
|||||++.|.+..|+++|..+|++. |+++|++++|+.+|..+.+++.++|++|+++|+|+|++|++|+||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999333578999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhcc-CC--ceEEeEEeeccccccc-cccChhhHHHHHHHHHhhcc--HHHHHHHHHHHH
Q 001277 94 ECKK-RD--HEIFPIFYDVEPTAVR-KQTTSFGEAFAKHEEAFKDN--IEKLQKWRDALK 147 (1109)
Q Consensus 94 ~~~~-~~--~~v~pv~~~v~p~~vr-~~~~~~~~a~~~~~~~~~~~--~~~~~~w~~al~ 147 (1109)
++.. .+ ..|+||||+|.+++++ .+.+.|+.++..+..-.... ......|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9988 44 7899999999999999 78888888887776544433 456788988764
No 15
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.76 E-value=3.3e-18 Score=168.49 Aligned_cols=135 Identities=44% Similarity=0.741 Sum_probs=114.9
Q ss_pred cccEEEcccc-ccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhhHHHHHH
Q 001277 13 KYDAFLSFRG-EDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWCLDELVK 91 (1109)
Q Consensus 13 ~~dvfis~~~-~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c~~El~~ 91 (1109)
+|||||||++ +|.++.|+.+|...|...|+.+|.|+... |.....+|.++|++|+++|+|+||+|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 55668999999999999999999997533 43334499999999999999999999999999999999
Q ss_pred HHHhcc--CCceEEeEEeeccccccccccChhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Q 001277 92 IVECKK--RDHEIFPIFYDVEPTAVRKQTTSFGEAFAKHEEAFKDNIEKLQKWRDALKVVA 150 (1109)
Q Consensus 92 ~~~~~~--~~~~v~pv~~~v~p~~vr~~~~~~~~a~~~~~~~~~~~~~~~~~w~~al~~~a 150 (1109)
++++.. ...+||||+++..|..+..+.+.++.++.....+..+...+ ..|+.++..++
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 998775 55789999999999889999999999998886555554444 68988887655
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=4e-20 Score=214.70 Aligned_cols=329 Identities=24% Similarity=0.306 Sum_probs=175.5
Q ss_pred EEEEccCCCCCCCCCCC-CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCC
Q 001277 528 LVILNLKDCTSLTTLPG-KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKD 606 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~ 606 (1109)
..++|+++. ....+|. +..+.+|+.|+++.|. +... |.....+.+|++|.|.+|.+..+|.++..+++|++|++++
T Consensus 47 L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~-i~~v-p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNY-IRSV-PSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeecccc-ccccCCchhhhHHHHhhcccchhh-HhhC-chhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 456666643 2233332 3345567777777765 6655 5556677778888888887777887777788888888877
Q ss_pred CcCCccccccccccCcCcEEEecCC-------------------CCCCcccccccCCCCCcEEeccCccCc---------
Q 001277 607 CKNLKSLSHTLRRLQCLKNLTLSGC-------------------SKLKKFPESLGSMKDLMELFLDGTSIA--------- 658 (1109)
Q Consensus 607 ~~~l~~lp~~l~~l~~L~~L~L~~~-------------------~~~~~~p~~l~~l~~L~~L~L~~~~i~--------- 658 (1109)
|... .+|..+..+..++.+..++| .....++..+..+++ .|+|..|.+.
T Consensus 124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 124 NHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred hccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccc
Confidence 6432 22222222222222222221 111112221121111 1222222222
Q ss_pred ------------ccCC-------------------cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcc
Q 001277 659 ------------EVPS-------------------SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQN 707 (1109)
Q Consensus 659 ------------~lp~-------------------~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 707 (1109)
.+.- .-..-.+|++++++.+ .+..+|++++.+.+|+.|+...|.. ..
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l-~~ 278 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRL-VA 278 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcchHHHHhcccceEecccchhH-Hh
Confidence 1000 0011234555555553 3455667777777777777776654 55
Q ss_pred cCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcc--------------------------cc
Q 001277 708 VPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWH--------------------------WH 761 (1109)
Q Consensus 708 lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~--------------------------~~ 761 (1109)
+|..+..+.+|+.|.+..|.+..+|.....+++|++|+|..|.......... .+
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 5555555566666666666666666655556666666665554322111000 00
Q ss_pred cccccccccCC-CccccCCCCCCCCCCCEEecCCCCCCCCCcccc-cCCCCCCCEEeCCCCCCcccchhhhc--------
Q 001277 762 FPFNLMGQRSY-PVALMLPSLSGLHSLSKLDLSDCGLGEGAIPND-IGNLCSLKQLNLSQNNFVTLPASINS-------- 831 (1109)
Q Consensus 762 ~~~~~l~~~~~-~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~~~~-------- 831 (1109)
..+..+...++ -.....+.+.++.+|+.|+|++|.+.. +|.. +.+++.|+.|+||||+++.||..+..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence 01111111111 112334557788888888888888743 5543 46777888888888887777655544
Q ss_pred --------------cCCCCceeccCCcCcCc--CC-CCC-CCcceEeccCCccc
Q 001277 832 --------------LFNLGQLDLEDCKRLQS--MP-QLP-SNLYEVQVNGCASL 867 (1109)
Q Consensus 832 --------------l~~L~~L~L~~c~~L~~--lp-~lp-~~L~~L~~~~C~~L 867 (1109)
++.|+.+||+.| .|+. +| .+| ++|++|+++|.+.+
T Consensus 437 ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 437 AHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCccc
Confidence 455555666533 2222 23 366 78888888887743
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=1e-16 Score=193.73 Aligned_cols=259 Identities=25% Similarity=0.265 Sum_probs=189.1
Q ss_pred EEEccCCCCCCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCc
Q 001277 529 VILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCK 608 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~ 608 (1109)
..|+++.+ .++.+|... .++|+.|++.+|. ++.+ |. .+++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 204 ~~LdLs~~-~LtsLP~~l-~~~L~~L~L~~N~-Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGES-GLTTLPDCL-PAHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCC-CCCcCCcch-hcCCCEEEccCCc-CCCC-CC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 45677665 666777632 2468889998876 7776 54 357799999999888888753 4688888888874
Q ss_pred CCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCC
Q 001277 609 NLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCI 688 (1109)
Q Consensus 609 ~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i 688 (1109)
+..+|.. ..+|+.|+|++|. +..+|.. +++|+.|+|++|.+..+|.. ..+|+.|++++|. +..+|..
T Consensus 274 -L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l- 340 (788)
T PRK15387 274 -LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPTL- 340 (788)
T ss_pred -hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCC---cccccccccccCc-ccccccc-
Confidence 5666652 3568888888874 4456653 46788999999988888763 2457778888754 4556642
Q ss_pred CCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccccccccc
Q 001277 689 NGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMG 768 (1109)
Q Consensus 689 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~ 768 (1109)
..+|++|+|++|. +..+|.. ..+|+.|++++|.+..+|.. +.+|+.|++++|....
T Consensus 341 --p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~--------------- 396 (788)
T PRK15387 341 --PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS--------------- 396 (788)
T ss_pred --ccccceEecCCCc-cCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC---------------
Confidence 2578899998876 4456653 34678888888888888753 3578888888876432
Q ss_pred ccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCc
Q 001277 769 QRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQS 848 (1109)
Q Consensus 769 ~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~ 848 (1109)
+|.. .++|+.|++++|.+.. +|.. +.+|+.|+|++|+++.+|.++..+++|+.|+|++|+.-..
T Consensus 397 --------LP~l---~s~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 397 --------LPVL---PSELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred --------CCCc---ccCCCEEEccCCcCCC--CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 1221 2579999999999853 7753 3578899999999999999999999999999999986554
Q ss_pred CC
Q 001277 849 MP 850 (1109)
Q Consensus 849 lp 850 (1109)
.|
T Consensus 461 ~~ 462 (788)
T PRK15387 461 TL 462 (788)
T ss_pred HH
Confidence 43
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=8.5e-17 Score=196.01 Aligned_cols=244 Identities=25% Similarity=0.311 Sum_probs=151.2
Q ss_pred ceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecC
Q 001277 551 LKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSG 630 (1109)
Q Consensus 551 L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 630 (1109)
...|+++++. ++.+ |..+ +++|+.|++++|.++.+|..+. .+|+.|++++|. ++.+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~-LtsL-P~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILG-LTTI-PACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCC-cCcC-Cccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence 4556666654 5555 4322 3457777777777777776553 477777777653 556665442 4677777777
Q ss_pred CCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCc
Q 001277 631 CSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPE 710 (1109)
Q Consensus 631 ~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 710 (1109)
|.. ..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|+ +..+|..+. ++|+.|++++|.. ..+|.
T Consensus 251 N~L-~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~ 321 (754)
T PRK15370 251 NRI-TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSL-TALPE 321 (754)
T ss_pred Ccc-CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCcc-ccCCc
Confidence 643 35565543 367777777777777776553 467777777753 445555432 4677777777653 34554
Q ss_pred ccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEE
Q 001277 711 TLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKL 790 (1109)
Q Consensus 711 ~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L 790 (1109)
.+. ++|+.|++++|.++.+|..+. ++|+.|++++|..... |..+ .++|+.|
T Consensus 322 ~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~L-----------------------P~~l--p~~L~~L 372 (754)
T PRK15370 322 TLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVL-----------------------PETL--PPTITTL 372 (754)
T ss_pred ccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcC-----------------------Chhh--cCCcCEE
Confidence 332 567777777777777776553 5777777777653211 1111 1467777
Q ss_pred ecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhh----ccCCCCceeccCCcC
Q 001277 791 DLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASIN----SLFNLGQLDLEDCKR 845 (1109)
Q Consensus 791 ~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~----~l~~L~~L~L~~c~~ 845 (1109)
+|++|++. .+|..+. .+|+.|++++|+++.+|.++. .++++..|+|.+|+.
T Consensus 373 dLs~N~Lt--~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 373 DVSRNALT--NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred ECCCCcCC--CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 77777774 3665443 367777777777777665443 346677777777764
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=2e-15 Score=182.72 Aligned_cols=240 Identities=26% Similarity=0.297 Sum_probs=184.4
Q ss_pred EEEccCCCCCCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCc
Q 001277 529 VILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCK 608 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~ 608 (1109)
..|++.. +.++.+|.. +++|++|++++|. ++.+ |. .+++|+.|++..|.+..+|.. +.+|+.|++++|
T Consensus 225 ~~L~L~~-N~Lt~LP~l--p~~Lk~LdLs~N~-LtsL-P~---lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N- 292 (788)
T PRK15387 225 TTLVIPD-NNLTSLPAL--PPELRTLEVSGNQ-LTSL-PV---LPPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGN- 292 (788)
T ss_pred CEEEccC-CcCCCCCCC--CCCCcEEEecCCc-cCcc-cC---cccccceeeccCCchhhhhhc---hhhcCEEECcCC-
Confidence 4555554 466777753 5789999999986 8877 54 356899999999999988863 467889999997
Q ss_pred CCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCC
Q 001277 609 NLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCI 688 (1109)
Q Consensus 609 ~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i 688 (1109)
.++.+|.. +++|++|+|++|. +..+|... .+|+.|++++|.+..+|.. ..+|+.|+|++|+ +..+|..
T Consensus 293 ~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l- 360 (788)
T PRK15387 293 QLTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ-LASLPTL- 360 (788)
T ss_pred cccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccCcccccccc---ccccceEecCCCc-cCCCCCC-
Confidence 46677762 5789999999984 44566532 3688899999999998852 3589999999864 5567763
Q ss_pred CCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccccccccc
Q 001277 689 NGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMG 768 (1109)
Q Consensus 689 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~ 768 (1109)
..+|+.|++++|. +..+|.. ..+|+.|+|++|.++.+|.. .++|+.|++++|.....
T Consensus 361 --p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssI-------------- 417 (788)
T PRK15387 361 --PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSL-------------- 417 (788)
T ss_pred --Ccccceehhhccc-cccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCC--------------
Confidence 3578889999876 4467764 35799999999999998864 46899999999874321
Q ss_pred ccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcc-cchhh
Q 001277 769 QRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVT-LPASI 829 (1109)
Q Consensus 769 ~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~~ 829 (1109)
|.. +.+|+.|+|++|+++ .+|..++.+++|+.|+|++|+|+. .|..+
T Consensus 418 ---------P~l---~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 418 ---------PML---PSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---------Ccc---hhhhhhhhhccCccc--ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 211 246889999999996 499999999999999999999983 34444
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=1e-15 Score=186.53 Aligned_cols=228 Identities=24% Similarity=0.371 Sum_probs=169.9
Q ss_pred CCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEecc
Q 001277 574 NDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLD 653 (1109)
Q Consensus 574 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 653 (1109)
.+...|+++++.++.+|..+ .++|+.|+|++| .++.+|..+. .+|++|++++|. +..+|..+. .+|+.|+|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI--PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc--ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 34678889888898888765 358999999987 5667887553 589999999875 556776554 479999999
Q ss_pred CccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCc
Q 001277 654 GTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS 733 (1109)
Q Consensus 654 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~ 733 (1109)
+|.+..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.++.+|.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCc
Confidence 999999987764 58999999865 4557887654 589999999885 455665543 478889999999888876
Q ss_pred cccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCC
Q 001277 734 SIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLK 813 (1109)
Q Consensus 734 ~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 813 (1109)
.+. ++|+.|++++|.... +|..+ .++|+.|+|++|++.. +|..+ .++|+
T Consensus 322 ~l~--~sL~~L~Ls~N~Lt~-----------------------LP~~l--~~sL~~L~Ls~N~L~~--LP~~l--p~~L~ 370 (754)
T PRK15370 322 TLP--PGLKTLEAGENALTS-----------------------LPASL--PPELQVLDVSKNQITV--LPETL--PPTIT 370 (754)
T ss_pred ccc--ccceeccccCCcccc-----------------------CChhh--cCcccEEECCCCCCCc--CChhh--cCCcC
Confidence 553 688888888875432 12222 2578999999998853 66654 36899
Q ss_pred EEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCC
Q 001277 814 QLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ 851 (1109)
Q Consensus 814 ~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~ 851 (1109)
.|+|++|+++.+|..+. ..|+.|++++|. +..+|.
T Consensus 371 ~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~ 405 (754)
T PRK15370 371 TLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPE 405 (754)
T ss_pred EEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCch
Confidence 99999999988887764 368888888874 446663
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=1.3e-17 Score=194.16 Aligned_cols=284 Identities=25% Similarity=0.274 Sum_probs=180.8
Q ss_pred EEEccCCCCCCCCCCC--------CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCc
Q 001277 529 VILNLKDCTSLTTLPG--------KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLV 600 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~--------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 600 (1109)
+.+|++.|..++.+-- ...-++|+.|+.+.|+ ++.. .......+|++++++.+.+..+|.+++.+.+|+
T Consensus 191 ~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~-l~~~--~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 191 EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNP-LTTL--DVHPVPLNLQYLDISHNNLSNLPEWIGACANLE 267 (1081)
T ss_pred hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCc-ceee--ccccccccceeeecchhhhhcchHHHHhcccce
Confidence 3556665555443321 1234678889988888 5533 234567789999999999999999999999999
Q ss_pred EEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccC-CC-CCcEEeeecc
Q 001277 601 LLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIEL-LT-GLQLLNLNNC 678 (1109)
Q Consensus 601 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~-l~-~L~~L~L~~c 678 (1109)
.|+..+|. +..+|..+...++|+.|.+..| .+..+|+..+.+++|++|+|..|.|..+|..+-. +. .|..|+.+.+
T Consensus 268 ~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 268 ALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred Eecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 99999875 5888888889999999999885 6788899999999999999999999998874322 11 2445554432
Q ss_pred CCCcccCCC-CCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCc-cccccCCCcEEEccCCCCCCCCC
Q 001277 679 SNLVRLPSC-INGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS-SIFVMNNLKTLSFSGCNGPPSST 756 (1109)
Q Consensus 679 ~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~l~~l~~L~~L~L~~c~~~~~~~ 756 (1109)
.+..+|.. =..++.|+.|.+.+|......-+.+.++++|+.|+|++|.+..+|+ .+.++..|+.|+|+||+......
T Consensus 346 -~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~ 424 (1081)
T KOG0618|consen 346 -KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD 424 (1081)
T ss_pred -cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH
Confidence 23334421 1235667777777777666665667777777777777777777765 35567777777777776443211
Q ss_pred CcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCC
Q 001277 757 SWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQN 820 (1109)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n 820 (1109)
.......+..+...++.+..+| .+..++.|+.+|+|.|++....+|..... ++|++|+|+||
T Consensus 425 tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred HHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 1111111111222222222223 34444555555555555544444333222 45555555555
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2e-16 Score=148.78 Aligned_cols=160 Identities=31% Similarity=0.427 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccc
Q 001277 538 SLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTL 617 (1109)
Q Consensus 538 ~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l 617 (1109)
....+|++..+.++..|.++++. ++.. |..+..+.+|+.|++.+|.++++|.++..+++|+.|++.-| .+..+|..|
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNK-l~~v-ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgf 98 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNK-LTVV-PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGF 98 (264)
T ss_pred cHhhcccccchhhhhhhhcccCc-eeec-CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCcccc
Confidence 34467778888888999999987 8887 55588888899999999999999999999999999998764 577888889
Q ss_pred cccCcCcEEEecCCCCCC-cccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcE
Q 001277 618 RRLQCLKNLTLSGCSKLK-KFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKT 696 (1109)
Q Consensus 618 ~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 696 (1109)
+.++.|+.|||+.|+..+ .+|..+-.|..|+.|+|+.|.+.-+|..++++++||.|.+.+|. +-++|..++.++.|++
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRE 177 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHH
Confidence 999999999998876543 57777888888888888888888888888888888888887754 3344544444444444
Q ss_pred EEecC
Q 001277 697 LNLSG 701 (1109)
Q Consensus 697 L~Ls~ 701 (1109)
|.+.|
T Consensus 178 lhiqg 182 (264)
T KOG0617|consen 178 LHIQG 182 (264)
T ss_pred Hhccc
Confidence 44444
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=7.2e-16 Score=145.13 Aligned_cols=99 Identities=30% Similarity=0.526 Sum_probs=44.9
Q ss_pred cEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCc
Q 001277 648 MELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTA 727 (1109)
Q Consensus 648 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 727 (1109)
..|.|++|.+..+|+.|..+.+|+.|++.+ +.++.+|.+++.++.|+.|++.-| .+..+|..+|.++.|+.|||+.|+
T Consensus 36 TrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 36 TRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccc
Confidence 333334444444444444444444444443 223344444444444444444322 233445555555555555555555
Q ss_pred ccC--CCccccccCCCcEEEccC
Q 001277 728 IRR--PPSSIFVMNNLKTLSFSG 748 (1109)
Q Consensus 728 i~~--~p~~l~~l~~L~~L~L~~ 748 (1109)
+.+ +|..+..+..|+.|+|++
T Consensus 114 l~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcC
Confidence 443 355555555555554444
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=2.1e-15 Score=171.21 Aligned_cols=257 Identities=23% Similarity=0.201 Sum_probs=134.0
Q ss_pred cCCcCCcceeeccccCCc-----cccccccccCCCcEEeCCCCcCC------ccccccccccCcCcEEEecCCCCCCccc
Q 001277 570 AGSMNDLSELFLDRTTIE-----ELPLSIQHLTGLVLLNLKDCKNL------KSLSHTLRRLQCLKNLTLSGCSKLKKFP 638 (1109)
Q Consensus 570 ~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~L~~~~~l------~~lp~~l~~l~~L~~L~L~~~~~~~~~p 638 (1109)
+..+.+|++|+++++.++ .++..+...++|+.|+++++... ..++..+..+++|++|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 334445666666666653 34445556666777777665332 2233445556677777777765554444
Q ss_pred ccccCCCC---CcEEeccCccCcc-----cCCcccCC-CCCcEEeeeccCCCc----ccCCCCCCCCCCcEEEecCCCCC
Q 001277 639 ESLGSMKD---LMELFLDGTSIAE-----VPSSIELL-TGLQLLNLNNCSNLV----RLPSCINGLRSLKTLNLSGCSKL 705 (1109)
Q Consensus 639 ~~l~~l~~---L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l 705 (1109)
..+..+.+ |++|++++|.+.. +..++..+ ++|+.|++++|.... .++..+..+++|++|++++|...
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 44433333 6777776666551 22334445 666777776665431 22333445566666766666543
Q ss_pred c----ccCcccCCCCCccEEecCCCcccCC-----CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccc
Q 001277 706 Q----NVPETLGQVESLEELDISGTAIRRP-----PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVAL 776 (1109)
Q Consensus 706 ~----~lp~~l~~l~~L~~L~L~~~~i~~~-----p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~ 776 (1109)
. .++..+..+++|+.|++++|.+.+. +..+..+++|++|++++|...... ...
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~------------------~~~ 240 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG------------------AAA 240 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH------------------HHH
Confidence 2 2233344455666777766665432 233445566666666665422100 000
Q ss_pred cCCC-CCCCCCCCEEecCCCCCCCC---CcccccCCCCCCCEEeCCCCCCccc-----chhhhcc-CCCCceeccCCc
Q 001277 777 MLPS-LSGLHSLSKLDLSDCGLGEG---AIPNDIGNLCSLKQLNLSQNNFVTL-----PASINSL-FNLGQLDLEDCK 844 (1109)
Q Consensus 777 l~~~-l~~l~~L~~L~Ls~~~l~~~---~lp~~l~~l~~L~~L~Ls~n~l~~l-----p~~~~~l-~~L~~L~L~~c~ 844 (1109)
+... ....+.|++|++++|.+++. .+...+..+++|++|++++|.+..- ...+... +.|+.|++.+++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 0000 01235667777777666321 1233344556677777777766632 2233334 566666666553
No 25
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.46 E-value=3.1e-14 Score=131.38 Aligned_cols=87 Identities=36% Similarity=0.605 Sum_probs=76.1
Q ss_pred EEEccccccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhhHHHHHHHHHh
Q 001277 16 AFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWCLDELVKIVEC 95 (1109)
Q Consensus 16 vfis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c~~El~~~~~~ 95 (1109)
|||||+++| +.|+++|++.|+..|+++|.|. ++.+|+.+.+.|.++|++|+.+|+++||+|..|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 899999999 5799999999999999999997 999999999999999999999999999999999999999999844
Q ss_pred ccCCceEEeEEee
Q 001277 96 KKRDHEIFPIFYD 108 (1109)
Q Consensus 96 ~~~~~~v~pv~~~ 108 (1109)
.+..|+||..+
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 45689999954
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=9.2e-15 Score=165.97 Aligned_cols=249 Identities=24% Similarity=0.218 Sum_probs=149.5
Q ss_pred eeccccCCc--cccccccccCCCcEEeCCCCcCC----ccccccccccCcCcEEEecCCCCC------CcccccccCCCC
Q 001277 579 LFLDRTTIE--ELPLSIQHLTGLVLLNLKDCKNL----KSLSHTLRRLQCLKNLTLSGCSKL------KKFPESLGSMKD 646 (1109)
Q Consensus 579 L~L~~~~l~--~l~~~~~~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~L~~~~~~------~~~p~~l~~l~~ 646 (1109)
|+|.++.+. .....+..+.+|+.|++++|... ..++..+...++|++|+++++... ..++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 344444443 33344566777999999987632 335555667788999999887544 223456667788
Q ss_pred CcEEeccCccCcc-cCCcccCCC---CCcEEeeeccCCCc----ccCCCCCCC-CCCcEEEecCCCCCc----ccCcccC
Q 001277 647 LMELFLDGTSIAE-VPSSIELLT---GLQLLNLNNCSNLV----RLPSCINGL-RSLKTLNLSGCSKLQ----NVPETLG 713 (1109)
Q Consensus 647 L~~L~L~~~~i~~-lp~~i~~l~---~L~~L~L~~c~~l~----~lp~~i~~l-~~L~~L~Ls~c~~l~----~lp~~l~ 713 (1109)
|++|+++++.+.. .+..+..+. +|+.|++++|.... .+...+..+ ++|++|++++|.... .++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 8888888887762 333333333 38888888776441 222234455 778888888877542 2344455
Q ss_pred CCCCccEEecCCCcccC-----CCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCC
Q 001277 714 QVESLEELDISGTAIRR-----PPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLS 788 (1109)
Q Consensus 714 ~l~~L~~L~L~~~~i~~-----~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~ 788 (1109)
.+++|++|++++|.+.+ ++..+..+++|+.|++++|..... ....+...+..+++|+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~------------------~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE------------------GASALAETLASLKSLE 224 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH------------------HHHHHHHHhcccCCCC
Confidence 66778888887777763 233344556777777777653211 0111233355667777
Q ss_pred EEecCCCCCCCCCcccccC----CCCCCCEEeCCCCCCc-----ccchhhhccCCCCceeccCCcC
Q 001277 789 KLDLSDCGLGEGAIPNDIG----NLCSLKQLNLSQNNFV-----TLPASINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 789 ~L~Ls~~~l~~~~lp~~l~----~l~~L~~L~Ls~n~l~-----~lp~~~~~l~~L~~L~L~~c~~ 845 (1109)
+|++++|.+.+..+..... ..+.|+.|++++|.++ .+...+..+++|+.|++++|..
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 7777777764312111111 2367777777777765 3444555667777777776643
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=1.2e-11 Score=160.94 Aligned_cols=300 Identities=16% Similarity=0.164 Sum_probs=183.7
Q ss_pred CcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHH
Q 001277 180 KPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
+|.....+|-|..-++.+.. ....+++.|+|++|.||||++..+.+. ++.++|+. +.... .+ .....
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~d--~~-~~~f~ 75 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDESD--NQ-PERFA 75 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCccc--CC-HHHHH
Confidence 55567788888877776643 235789999999999999999988753 23466764 32221 11 34444
Q ss_pred HHHHHHHhhccCc------------ccccccccHHHHHHHHc--CCCCceEeccCCCHH---HHHHHHhcCCCCCCCcEE
Q 001277 260 KQLLSDLLKLADI------------SIWNVDDGINIIGSRLR--QKKVLLVIDDVADVE---QLQNLARKRDWFGPGSKI 322 (1109)
Q Consensus 260 ~~ll~~l~~~~~~------------~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~I 322 (1109)
..++..+...... ...+.......+...+. +.+++|||||+...+ ..+.+........++.++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~l 155 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTL 155 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEE
Confidence 5555555311100 00111122222333333 679999999995532 122222222233577899
Q ss_pred EEEeCCchhhH--hhCCCccceEEcC----CCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhc
Q 001277 323 VITTRDKQLLV--AHEVDEEHIYNLE----VLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFL 396 (1109)
Q Consensus 323 iiTTR~~~v~~--~~~~~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 396 (1109)
|||||...-.. ..... ....++. +|+.+|+.+||....... -..+...++.+.++|+|+++..++..+
T Consensus 156 v~~sR~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEEeCCCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99999843211 11111 1145555 999999999997665321 123567899999999999999888766
Q ss_pred CCCCHHHHHHHHHHhhcCCCChhHHHHHh-hhcCCcHHHHHHhhhhhcccCCCCHHHHHHHHHhCCCCcccchHHhhhcc
Q 001277 397 NGRSVDLWRSTLKRLKKEPPNRIINILQI-SFDGLQDLEKKIFLDVACFFKSWDRDHVEKILEGCGFSPVIGIEVLIEKS 475 (1109)
Q Consensus 397 ~~~~~~~w~~~l~~l~~~~~~~i~~~L~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~s 475 (1109)
...... .......+...+...+.+.+.. .++.||++.+++++.+|++. .++.+.+..+... -.....++.|.+.+
T Consensus 230 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~ 305 (903)
T PRK04841 230 RQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQG 305 (903)
T ss_pred hhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCC
Confidence 432210 0111122222223446655443 48999999999999999986 6666655555432 12355688999999
Q ss_pred CeeE-eC--CCeEehhHHHHHHhHhhhhcc
Q 001277 476 LLTV-DD--GNRLWMHDLLQELGHQIVQRQ 502 (1109)
Q Consensus 476 Li~~-~~--~~~~~mHdlv~~~~~~i~~~e 502 (1109)
++.. .+ ...|.+|++++++.+.....+
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 8653 22 237889999999999876443
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.7e-13 Score=145.76 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=56.5
Q ss_pred CCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchh-hhccCCCCceeccCCcCcCcCCC
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPAS-INSLFNLGQLDLEDCKRLQSMPQ 851 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~L~~c~~L~~lp~ 851 (1109)
|..+++|+.|+|++|.++ ..-+.++..+..|++|.|..|++..+... +..++.|+.|+|.+|+...--|.
T Consensus 270 f~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred HhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 788899999999999984 44567788899999999999999877654 67899999999998865544443
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=1.2e-13 Score=146.91 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=106.4
Q ss_pred CCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccc-cccccccCCCcEEeCCCCcCCccccc-
Q 001277 538 SLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEEL-PLSIQHLTGLVLLNLKDCKNLKSLSH- 615 (1109)
Q Consensus 538 ~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~lp~- 615 (1109)
.++.+|...- +.-..|.|..|. ++.+++..+..+++|+.|+|+.|+|+.| |..+..+..|..|-+.++..++.+|.
T Consensus 57 GL~eVP~~LP-~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANLP-PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccCC-CcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 4555553211 234566777776 8888777788888888999988888877 55778888888887777677788773
Q ss_pred cccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCC-cccCCCCCcEEeeeccC
Q 001277 616 TLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCS 679 (1109)
Q Consensus 616 ~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~ 679 (1109)
.|.+|..|+-|.+.-|...-...+.+..|++|..|.+..|.+..++. ++..+..++.+.+..+.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 57788888888888776666677788888889888888888888876 67888888888877665
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=7.1e-12 Score=155.61 Aligned_cols=287 Identities=26% Similarity=0.321 Sum_probs=177.2
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCc
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLK 624 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 624 (1109)
+..++.|++||+++|..+..+ |+.++.+-+|++|+++++.+..+|.++++|++|.+||+..+..+..+|.....+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~L-P~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKL-PSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcC-ChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 667888889999888878888 8888888888888888888888888888888888888888877777777666688888
Q ss_pred EEEecCCC--CCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCc----EEeeeccCCCcccCCCCCCCCCCcEEE
Q 001277 625 NLTLSGCS--KLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQ----LLNLNNCSNLVRLPSCINGLRSLKTLN 698 (1109)
Q Consensus 625 ~L~L~~~~--~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~----~L~L~~c~~l~~lp~~i~~l~~L~~L~ 698 (1109)
+|.+..-. .....-..+.++++|+.+....... .+-..+..+++|. .+.+.+ .....++..+..+.+|+.|.
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELS 723 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEE
Confidence 88886542 1112222334445555444433332 1111122233333 233323 34455566778899999999
Q ss_pred ecCCCCCcccCcccCC------CCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCC
Q 001277 699 LSGCSKLQNVPETLGQ------VESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSY 772 (1109)
Q Consensus 699 Ls~c~~l~~lp~~l~~------l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~ 772 (1109)
+.+|...+........ +++|..+.+..+..-..+.+....++|+.|.+..|......
T Consensus 724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~----------------- 786 (889)
T KOG4658|consen 724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI----------------- 786 (889)
T ss_pred EEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC-----------------
Confidence 9999876433222111 33455555555555555666777899999999988755432
Q ss_pred CccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCC
Q 001277 773 PVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQL 852 (1109)
Q Consensus 773 ~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~l 852 (1109)
++....+..++.+.+..+.+..-..-.+++.++++..+.+.+ +.|+.+.++.|+.+..+|..
T Consensus 787 -----i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~-------------~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 787 -----IPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF-------------LKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred -----CCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc-------------cchhheehhcCcccccCccc
Confidence 122233333444444444431110112233344444443332 23888888889999888853
Q ss_pred CCCcceEeccCC-ccccccccc
Q 001277 853 PSNLYEVQVNGC-ASLVTLSGA 873 (1109)
Q Consensus 853 p~~L~~L~~~~C-~~L~~l~~~ 873 (1109)
..+.+.+| ..+...+..
T Consensus 849 ----~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 849 ----STLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ----cccceeccccceeecCCc
Confidence 46677776 666655543
No 31
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.14 E-value=1.9e-09 Score=125.93 Aligned_cols=251 Identities=17% Similarity=0.183 Sum_probs=148.6
Q ss_pred ccccccccchhhHHHHHhhhccc--CCCeeEEEEEecCCchhHHHHHHHHHHHhcccc-ceEEeeechhhhcccCChHHH
Q 001277 182 EILKELVGIDSRLEKLRFLIATE--SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD-GSTFLANVREKSEKEGSVVSL 258 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l 258 (1109)
..++.++||+.++++|...+... ....+.+.|+|++|+|||++++.+++.+..... ..+...+.... .....+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~----~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID----RTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC----CCHHHH
Confidence 35678999999999999888532 234466889999999999999999998766542 22222222221 124556
Q ss_pred HHHHHHHHhhc-cCcccccccccHHHHHHHHc--CCCCceEeccCCCHH------HHHHHHhcCCCCCCCc--EEEEEeC
Q 001277 259 QKQLLSDLLKL-ADISIWNVDDGINIIGSRLR--QKKVLLVIDDVADVE------QLQNLARKRDWFGPGS--KIVITTR 327 (1109)
Q Consensus 259 ~~~ll~~l~~~-~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~------~~~~l~~~~~~~~~gs--~IiiTTR 327 (1109)
...++.++... ......+..+....+.+.+. +++++||||+++... .+..+....... +++ .+|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence 66777776531 11111233455666666665 456899999998753 345554432211 233 3566666
Q ss_pred CchhhHhhC-----CCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHH----hCCCchhHHHHhhhc--
Q 001277 328 DKQLLVAHE-----VDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKY----AGGLPLALTVLGSFL-- 396 (1109)
Q Consensus 328 ~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~----~~GlPLal~~l~~~L-- 396 (1109)
+..+..... .-....+.+++++.++..+++..++-..-.+..-..+..+.+++. .|..+.|+.++-...
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 544322210 111136899999999999999988632211111112333333333 455677776654321
Q ss_pred ---CC---CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcc
Q 001277 397 ---NG---RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACF 444 (1109)
Q Consensus 397 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f 444 (1109)
.+ -+.+....+++... .......+..||.++|.++..++..
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 24566666666552 2334556789999999888777644
No 32
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.10 E-value=9.8e-10 Score=137.37 Aligned_cols=310 Identities=15% Similarity=0.187 Sum_probs=179.9
Q ss_pred cccchhhHHHHHhhhccc-CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc---cCChHHHHHHH
Q 001277 187 LVGIDSRLEKLRFLIATE-SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK---EGSVVSLQKQL 262 (1109)
Q Consensus 187 ~vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~---~~~~~~l~~~l 262 (1109)
++||+.+++.|...+..- .....++.+.|..|||||+|+++|...+..++. .|+..--..... ..++.+..+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCchHHHHHHHHHH
Confidence 789999999998888742 335679999999999999999999997766521 111100000000 00111222222
Q ss_pred HH-------------------HHhhccCcc----------cc-----------cccc-----cHHHHHHHH-cCCCCceE
Q 001277 263 LS-------------------DLLKLADIS----------IW-----------NVDD-----GINIIGSRL-RQKKVLLV 296 (1109)
Q Consensus 263 l~-------------------~l~~~~~~~----------~~-----------~~~~-----~~~~l~~~L-~~k~~LlV 296 (1109)
+. .++...... .. .... ....+.... +.|+.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 22 221000000 00 0000 011111111 35699999
Q ss_pred eccC-CCHHH----HHHHHhcCC---CCCCCcEEEEEeCCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 001277 297 IDDV-ADVEQ----LQNLARKRD---WFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM 368 (1109)
Q Consensus 297 LDdv-~~~~~----~~~l~~~~~---~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 368 (1109)
+||+ |-... ++.+..... ......-.+.|.+...-...........+.+.||+..+..++.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 9999 33222 344433321 001112223333332111111222234899999999999999988874422
Q ss_pred chHHHHHHHHHHHhCCCchhHHHHhhhcCCC-------CHHHHHHHHHHhhcCC-CChhHHHHHhhhcCCcHHHHHHhhh
Q 001277 369 GEYVELSKRVLKYAGGLPLALTVLGSFLNGR-------SVDLWRSTLKRLKKEP-PNRIINILQISFDGLQDLEKKIFLD 440 (1109)
Q Consensus 369 ~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~L~~sy~~L~~~~k~~fl~ 440 (1109)
....+..+.|+++.+|+|+.+..+-..+... +...|..-...+...+ ...+.+.+..-.+.||...|+++..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2234678899999999999999988877642 2334544333333221 1225556888999999999999999
Q ss_pred hhcccCCCCHHHHHHHHHhCCCCcccchHHhhhccCeeEeC----------CC-eEehhHHHHHHhHhhhhc
Q 001277 441 VACFFKSWDRDHVEKILEGCGFSPVIGIEVLIEKSLLTVDD----------GN-RLWMHDLLQELGHQIVQR 501 (1109)
Q Consensus 441 ~a~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~----------~~-~~~mHdlv~~~~~~i~~~ 501 (1109)
.||+.+.++.+.+..++.........++......++|.... .. +-..|+.+|+.+.....+
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 99999999999888887754433333333344444444321 11 236899999998876543
No 33
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=3.1e-10 Score=122.43 Aligned_cols=199 Identities=21% Similarity=0.218 Sum_probs=103.2
Q ss_pred cccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHH------HH
Q 001277 187 LVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSL------QK 260 (1109)
Q Consensus 187 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 260 (1109)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-...+|+.......... .... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESS--LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHH--HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhH--HHHHHHHHHHHH
Confidence 799999999999998643 3578999999999999999999998754332344443222211100 1111 11
Q ss_pred HHHHHHhhcc-Cc--------ccccccccHHHHHHHHc--CCCCceEeccCCCHH-----------HHHHHHhcCCCCCC
Q 001277 261 QLLSDLLKLA-DI--------SIWNVDDGINIIGSRLR--QKKVLLVIDDVADVE-----------QLQNLARKRDWFGP 318 (1109)
Q Consensus 261 ~ll~~l~~~~-~~--------~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~-----------~~~~l~~~~~~~~~ 318 (1109)
.+...+.... +. ...........+.+.+. +++++||+||++... .+..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 1111122110 00 00222333444444444 356999999986554 12223333221 33
Q ss_pred CcEEEEEeCCchhhHhh------CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 001277 319 GSKIVITTRDKQLLVAH------EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 391 (1109)
Q Consensus 319 gs~IiiTTR~~~v~~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 391 (1109)
...+|++.....+.... .......+.+++|+.+++++++...+-.. ...+...+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44455555554444330 11222359999999999999998865332 11122346679999999999998864
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=1.2e-09 Score=122.75 Aligned_cols=268 Identities=18% Similarity=0.164 Sum_probs=146.1
Q ss_pred cccccchhhHHHHHhhhccc---CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATE---SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQ 261 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1109)
.+|||++..++.|..++... ....+.+.++|++|+|||+||+++++.+...+. ...... ... ...+ ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~-~~~---~~~l-~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPA-LEK---PGDL-AA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccch-hcC---chhH-HH
Confidence 57999999999998888632 233556889999999999999999997754321 110000 000 1111 11
Q ss_pred HHHHHhhccCccccc----ccccHHHHHHHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhhHhhCC
Q 001277 262 LLSDLLKLADISIWN----VDDGINIIGSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEV 337 (1109)
Q Consensus 262 ll~~l~~~~~~~~~~----~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~ 337 (1109)
.+..+....-....+ .....+.+...+.+.+..+|+|+..+..++... ..+..-|..|||...+......
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 111111000000000 001112222233333333444433322222111 1234556667776544332111
Q ss_pred CccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhcC------C---CCHHHHHHHH
Q 001277 338 DEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLN------G---RSVDLWRSTL 408 (1109)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~------~---~~~~~w~~~l 408 (1109)
.-...+++++++.+|..+++.+.+..... .-..+....|++.++|.|-.+..++..+. + .+.+..+.
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~-- 224 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK-- 224 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH--
Confidence 11126899999999999999988754322 22346778999999999976655544321 0 11111111
Q ss_pred HHhhcCCCChhHHHHHhhhcCCcHHHHHHhh-hhhcccCC-CCHHHHHHHHHhCCCCcccchH-HhhhccCeeEeC
Q 001277 409 KRLKKEPPNRIINILQISFDGLQDLEKKIFL-DVACFFKS-WDRDHVEKILEGCGFSPVIGIE-VLIEKSLLTVDD 481 (1109)
Q Consensus 409 ~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~ 481 (1109)
....+...|.++++.++..+. .++.+..+ ...+.+...+..........++ .|++++||....
T Consensus 225 ----------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 225 ----------ALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred ----------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCC
Confidence 222245568889998888776 44555432 4566666666555444455567 699999997443
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=9.7e-10 Score=124.30 Aligned_cols=261 Identities=18% Similarity=0.163 Sum_probs=148.8
Q ss_pred cccccccccchhhHHHHHhhhcc---cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIAT---ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
|....+|||++..++.+..++.. .....+.+.|+|++|+||||||+.+++.+...+. +.. .. .... . .
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~-~~~~---~-~ 91 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GP-ALEK---P-G 91 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cc-cccC---h-H
Confidence 45678899999999999887763 2334567889999999999999999998764321 111 00 0000 0 0
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH--HHHHHHhcCC-------------------CC
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE--QLQNLARKRD-------------------WF 316 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~-------------------~~ 316 (1109)
....++..+ ++.-+|+||+++... ..+.+..... ..
T Consensus 92 ~l~~~l~~l-----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 92 DLAAILTNL-----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred HHHHHHHhc-----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 111111111 123456666664321 1111111000 01
Q ss_pred CCCcEEEEEeCCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhc
Q 001277 317 GPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFL 396 (1109)
Q Consensus 317 ~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 396 (1109)
.+.+-|..|||...+.......-...+++++++.+|..+++.+.+..... .-..+....|++.|+|.|-.+..+...+
T Consensus 149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 23445666777554333221111127899999999999999988754332 2334678999999999996555444322
Q ss_pred CCCCHHHHHHHHHHhhcCCC---ChhHHHHHhhhcCCcHHHHHHhh-hhhcccCC-CCHHHHHHHHHhCCCCcccchH-H
Q 001277 397 NGRSVDLWRSTLKRLKKEPP---NRIINILQISFDGLQDLEKKIFL-DVACFFKS-WDRDHVEKILEGCGFSPVIGIE-V 470 (1109)
Q Consensus 397 ~~~~~~~w~~~l~~l~~~~~---~~i~~~L~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~ 470 (1109)
. .|.... .-..... ......+...+.+|++..+..+. .+..|..+ ...+.+...+.......+..++ .
T Consensus 227 ~-----~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~ 300 (328)
T PRK00080 227 R-----DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPY 300 (328)
T ss_pred H-----HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHH
Confidence 1 111100 0000011 12223455677889998888885 55556543 4567776666554444444566 8
Q ss_pred hhhccCeeEeC
Q 001277 471 LIEKSLLTVDD 481 (1109)
Q Consensus 471 L~~~sLi~~~~ 481 (1109)
|++.+||....
T Consensus 301 Li~~~li~~~~ 311 (328)
T PRK00080 301 LIQQGFIQRTP 311 (328)
T ss_pred HHHcCCcccCC
Confidence 99999997443
No 36
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.03 E-value=1.8e-08 Score=116.55 Aligned_cols=251 Identities=15% Similarity=0.145 Sum_probs=143.4
Q ss_pred ccccccccchhhHHHHHhhhcc--cCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc-----ceEEeeechhhhcccCC
Q 001277 182 EILKELVGIDSRLEKLRFLIAT--ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD-----GSTFLANVREKSEKEGS 254 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~~~~~~~~~~ 254 (1109)
..++.++||+.++++|...+.. .+...+.+.|+|++|+|||++++++++.+..... ..+.+.+.... ..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~----~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL----DT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC----CC
Confidence 3456899999999999998863 1234567899999999999999999987654322 12222222221 12
Q ss_pred hHHHHHHHHHHHhh-ccCc--ccccccccHHHHHHHHc--CCCCceEeccCCCHH-----HHHHHHhcCCC-C--CCCcE
Q 001277 255 VVSLQKQLLSDLLK-LADI--SIWNVDDGINIIGSRLR--QKKVLLVIDDVADVE-----QLQNLARKRDW-F--GPGSK 321 (1109)
Q Consensus 255 ~~~l~~~ll~~l~~-~~~~--~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~-----~~~~l~~~~~~-~--~~gs~ 321 (1109)
...+...++.++.. .... ...+..+....+.+.+. +++++||||+++... .+..+...... . +....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 44566667776632 1111 00122334455555553 567899999998772 13344332111 1 12334
Q ss_pred EEEEeCCchhhHhhC-----CCccceEEcCCCCHHHHHHHHHHhhhc---CCCCCchHHHHHHHHHHHhCCCchhH-HHH
Q 001277 322 IVITTRDKQLLVAHE-----VDEEHIYNLEVLSNDEALQLFSMKAFK---TRQPMGEYVELSKRVLKYAGGLPLAL-TVL 392 (1109)
Q Consensus 322 IiiTTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~~~~~~~~~~i~~~~~GlPLal-~~l 392 (1109)
+|.+|+......... .-....+.+++++.+|..+++..++-. .....++..+.+.+++....|.|-.+ ..+
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555555443221110 011136899999999999999988741 11122333345666777777888433 322
Q ss_pred hhhc-----CC---CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhc
Q 001277 393 GSFL-----NG---RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVAC 443 (1109)
Q Consensus 393 ~~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~ 443 (1109)
-... .+ .+.+..+.+.+.+. .....-+..+||.+++.++..++.
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~ 299 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIAN 299 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111 11 24555555555442 233345667899988877776654
No 37
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.03 E-value=8.7e-09 Score=121.45 Aligned_cols=299 Identities=18% Similarity=0.230 Sum_probs=183.0
Q ss_pred CcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHH
Q 001277 180 KPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
+|....+.|-|..-+..+.. ..+.|.+.|..++|.|||||+.+.+.+. ..-..+.|+.- .+.........
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~~-~~~~~v~Wlsl----de~dndp~rF~ 83 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRELA-ADGAAVAWLSL----DESDNDPARFL 83 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHhc-CcccceeEeec----CCccCCHHHHH
Confidence 45557788888876666553 3468999999999999999999988833 33345677752 22222255566
Q ss_pred HHHHHHHhhccCc------------ccccccccHHHHHHHHc--CCCCceEeccCCCH------HHHHHHHhcCCCCCCC
Q 001277 260 KQLLSDLLKLADI------------SIWNVDDGINIIGSRLR--QKKVLLVIDDVADV------EQLQNLARKRDWFGPG 319 (1109)
Q Consensus 260 ~~ll~~l~~~~~~------------~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~------~~~~~l~~~~~~~~~g 319 (1109)
..++..+...... ...+....+..+...+. .++.++||||..-. +.++.++.. .+++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APEN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCC
Confidence 6666655411110 01223334444444443 46899999997432 235555544 4688
Q ss_pred cEEEEEeCCchhhHhhCC-CccceEEcC----CCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhh
Q 001277 320 SKIVITTRDKQLLVAHEV-DEEHIYNLE----VLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGS 394 (1109)
Q Consensus 320 s~IiiTTR~~~v~~~~~~-~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~ 394 (1109)
-..|||||...-...... -.....+++ .|+.+|+.++|..+... +-.+..++.+.+..+|.+-|+..++-
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHH
Confidence 999999998642211110 000123333 37999999999876521 22235578999999999999999887
Q ss_pred hcCC-CCHHHHHHHHHHhhcCCCChhHH-HHHhhhcCCcHHHHHHhhhhhcccCCCCHHHHHHHHHhCCCCcccchHHhh
Q 001277 395 FLNG-RSVDLWRSTLKRLKKEPPNRIIN-ILQISFDGLQDLEKKIFLDVACFFKSWDRDHVEKILEGCGFSPVIGIEVLI 472 (1109)
Q Consensus 395 ~L~~-~~~~~w~~~l~~l~~~~~~~i~~-~L~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~ 472 (1109)
.+++ .+.+.-...+... .+-|.+ ...--++.||++.|..++.+|++.. +.-+....+... .....-++.|.
T Consensus 236 a~~~~~~~~q~~~~LsG~----~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~--~ng~amLe~L~ 308 (894)
T COG2909 236 ALRNNTSAEQSLRGLSGA----ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGE--ENGQAMLEELE 308 (894)
T ss_pred HccCCCcHHHHhhhccch----HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcC--CcHHHHHHHHH
Confidence 7773 3333222222111 111222 2233478999999999999998843 222222222211 11122378888
Q ss_pred hccCeeE--eC-CCeEehhHHHHHHhHhhhhccC
Q 001277 473 EKSLLTV--DD-GNRLWMHDLLQELGHQIVQRQS 503 (1109)
Q Consensus 473 ~~sLi~~--~~-~~~~~mHdlv~~~~~~i~~~e~ 503 (1109)
+++|+-+ ++ ++.|+.|.++.++.+.-.+.+.
T Consensus 309 ~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 309 RRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred hCCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 8888763 33 6689999999999988776643
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=4e-10 Score=131.80 Aligned_cols=197 Identities=34% Similarity=0.504 Sum_probs=143.1
Q ss_pred EEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCC-CCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCC
Q 001277 625 NLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLT-GLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCS 703 (1109)
Q Consensus 625 ~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 703 (1109)
.|++.++... .-+..+..++.+..|++.++.+.+++...+.+. +|+.|+++++ .+..+|..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 4555544321 222233444677788888888888887777774 8888888874 455565667788888888888876
Q ss_pred CCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCC
Q 001277 704 KLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSG 783 (1109)
Q Consensus 704 ~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~ 783 (1109)
+..+|...+.+++|+.|++++|.+..+|..+..+..|+.|.+++|.... .+..+..
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-----------------------~~~~~~~ 230 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-----------------------LLSSLSN 230 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-----------------------cchhhhh
Confidence 4556665557788999999999999998877777888899888874221 2344667
Q ss_pred CCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCC
Q 001277 784 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMP 850 (1109)
Q Consensus 784 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp 850 (1109)
+.++..|.+.+|.+.. ++..++.+++|+.|++++|.++.++. +..+.+|+.|+++++.....+|
T Consensus 231 ~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 231 LKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccCCceeee--ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 7778888888887743 46778888889999999998888886 8888888888888877665554
No 39
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.97 E-value=2e-08 Score=110.82 Aligned_cols=180 Identities=17% Similarity=0.138 Sum_probs=105.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
.+++.|+|++|+|||||++.+++.....-...+++.. .... ...+...++..+...... .+.......+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~-~~~~l~~i~~~lG~~~~~--~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVD-AEDLLRMVAADFGLETEG--RDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCC-HHHHHHHHHHHcCCCCCC--CCHHHHHHHHHHH
Confidence 4689999999999999999999876532111112211 1112 445555565555422111 1112222333322
Q ss_pred H-----cCCCCceEeccCCCHH--HHHHHHhcCC---CCCCCcEEEEEeCCchhhHhhC--------CCccceEEcCCCC
Q 001277 288 L-----RQKKVLLVIDDVADVE--QLQNLARKRD---WFGPGSKIVITTRDKQLLVAHE--------VDEEHIYNLEVLS 349 (1109)
Q Consensus 288 L-----~~k~~LlVLDdv~~~~--~~~~l~~~~~---~~~~gs~IiiTTR~~~v~~~~~--------~~~~~~~~l~~L~ 349 (1109)
+ .+++.+||+||++... .++.+..... .......|++|.... +..... ......+++++|+
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2 5678999999997753 3444432211 112233455555432 211111 0012268999999
Q ss_pred HHHHHHHHHHhhhcCCC--CCchHHHHHHHHHHHhCCCchhHHHHhhhc
Q 001277 350 NDEALQLFSMKAFKTRQ--PMGEYVELSKRVLKYAGGLPLALTVLGSFL 396 (1109)
Q Consensus 350 ~~ea~~Lf~~~af~~~~--~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 396 (1109)
.+|..+++..++..... ...-..+..+.|++.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999887753221 112235788999999999999999888765
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.3e-11 Score=127.50 Aligned_cols=64 Identities=28% Similarity=0.355 Sum_probs=34.3
Q ss_pred CCCCCCCCEEecCCCCCCCCCcccc-----cCCCCCCCEEeCCCCCCcccch--hhhccCCCCceeccCCc
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAIPND-----IGNLCSLKQLNLSQNNFVTLPA--SINSLFNLGQLDLEDCK 844 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~lp~~-----l~~l~~L~~L~Ls~n~l~~lp~--~~~~l~~L~~L~L~~c~ 844 (1109)
.+.|+.|+.|+++.|++.+-.+|+. ...+++|++|+++.|++..++. .+..+++|+.|.+..+.
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 3445555555555555544444433 3445666666666666655442 34455566666654443
No 41
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=4.1e-09 Score=106.89 Aligned_cols=145 Identities=25% Similarity=0.369 Sum_probs=85.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcccc-----ceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFD-----GSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINI 283 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 283 (1109)
|++.|+|.+|+||||+++.++..+..... ...|+...+....... ...+...+..+..... ..... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~----~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNN-SRSLADLLFDQLPESI----APIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccc-cchHHHHHHHhhccch----hhhHH---H
Confidence 68999999999999999999987766542 2344444444333222 1123333333322111 11111 1
Q ss_pred HHHH-HcCCCCceEeccCCCHHH---------HHHHHh-cCC-CCCCCcEEEEEeCCchhhHhhC-CCccceEEcCCCCH
Q 001277 284 IGSR-LRQKKVLLVIDDVADVEQ---------LQNLAR-KRD-WFGPGSKIVITTRDKQLLVAHE-VDEEHIYNLEVLSN 350 (1109)
Q Consensus 284 l~~~-L~~k~~LlVLDdv~~~~~---------~~~l~~-~~~-~~~~gs~IiiTTR~~~v~~~~~-~~~~~~~~l~~L~~ 350 (1109)
+... ...++++||||++|.... +..++. ... ...++.+||||+|......... ......+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 2222 257899999999976533 112221 111 1357899999999876622211 22223799999999
Q ss_pred HHHHHHHHHhh
Q 001277 351 DEALQLFSMKA 361 (1109)
Q Consensus 351 ~ea~~Lf~~~a 361 (1109)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997654
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.9e-10 Score=124.75 Aligned_cols=214 Identities=20% Similarity=0.210 Sum_probs=129.5
Q ss_pred ccccCCCcEEeCCCCcCCcccc--ccccccCcCcEEEecCCCCCC--cccccccCCCCCcEEeccCccCcccCCc--ccC
Q 001277 593 IQHLTGLVLLNLKDCKNLKSLS--HTLRRLQCLKNLTLSGCSKLK--KFPESLGSMKDLMELFLDGTSIAEVPSS--IEL 666 (1109)
Q Consensus 593 ~~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~~~i~~lp~~--i~~ 666 (1109)
-.++++|+.+.|.+|. ....+ .....+++++.|||++|-... .+-.....+++|+.|+|+.|.+...-++ -..
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3567788888887753 33333 234567888888888763222 2334556777888888887777643322 235
Q ss_pred CCCCcEEeeeccCCC-cccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCC--ccccccCCCcE
Q 001277 667 LTGLQLLNLNNCSNL-VRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPP--SSIFVMNNLKT 743 (1109)
Q Consensus 667 l~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p--~~l~~l~~L~~ 743 (1109)
++.|+.|.|+.|... ..+...+..+++|+.|+|.+|............+..|++|+|++|.+...+ ..++.++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 667777777777653 223233345677788888777533322223334556777888887777775 45667777777
Q ss_pred EEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc
Q 001277 744 LSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 744 L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~ 823 (1109)
|+++.|....... +..........+++|++|++..|++.+..--..+..+++|+.|.+..|.+.
T Consensus 276 Lnls~tgi~si~~----------------~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAE----------------PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcC----------------CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777765433211 000001113456778888888887755444445666777777777777665
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=3.7e-11 Score=133.91 Aligned_cols=207 Identities=27% Similarity=0.396 Sum_probs=155.8
Q ss_pred cCCcccccccc--ccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccC
Q 001277 608 KNLKSLSHTLR--RLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLP 685 (1109)
Q Consensus 608 ~~l~~lp~~l~--~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp 685 (1109)
..++.+|..-. .+.--...||+.| ....+|..+..+..|+.|.|..|.+..+|..+.++..|.+|+|+.| .+..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCC
Confidence 34555553211 2333445677774 5667888888888899999999999999999999999999999875 456788
Q ss_pred CCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccc
Q 001277 686 SCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFN 765 (1109)
Q Consensus 686 ~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~ 765 (1109)
..++.|+ |+.|.+++| +++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|....
T Consensus 138 ~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~------------ 203 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED------------ 203 (722)
T ss_pred hhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh------------
Confidence 8887775 888888775 47788888888888999999999999998888888888888887765322
Q ss_pred cccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhh---hccCCCCceeccC
Q 001277 766 LMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASI---NSLFNLGQLDLED 842 (1109)
Q Consensus 766 ~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~---~~l~~L~~L~L~~ 842 (1109)
+|+.+..+ .|..||+|.|++.. +|-.+..|..|++|-|.+|.+.+-|+.| +...--++|+..-
T Consensus 204 -----------lp~El~~L-pLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 204 -----------LPEELCSL-PLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred -----------CCHHHhCC-ceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchh
Confidence 35555533 48888888888855 8888888888888888888888877765 3344456777777
Q ss_pred Cc
Q 001277 843 CK 844 (1109)
Q Consensus 843 c~ 844 (1109)
|.
T Consensus 270 ~q 271 (722)
T KOG0532|consen 270 CQ 271 (722)
T ss_pred cc
Confidence 73
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=8.4e-11 Score=131.09 Aligned_cols=203 Identities=26% Similarity=0.364 Sum_probs=133.7
Q ss_pred CCCCccccccc--CCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccC
Q 001277 632 SKLKKFPESLG--SMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVP 709 (1109)
Q Consensus 632 ~~~~~~p~~l~--~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 709 (1109)
..++.+|-.-. .+.--...+|+.|.+.++|..+..+..|..|.|..|. +..+|..++++..|..|+|+.|. +..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCC
Confidence 34444443332 2333445677777777777777777777777776543 45667777777777777777765 45566
Q ss_pred cccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCE
Q 001277 710 ETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSK 789 (1109)
Q Consensus 710 ~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~ 789 (1109)
..+..++ |+.|-+++|.++.+|..++.+..|..|+.+.|... .+|+.++++.+|+.
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-----------------------slpsql~~l~slr~ 193 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-----------------------SLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh-----------------------hchHHhhhHHHHHH
Confidence 6666665 77777777777777777777777777777766532 23556777777777
Q ss_pred EecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCC-C-----CCCCcceEeccC
Q 001277 790 LDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMP-Q-----LPSNLYEVQVNG 863 (1109)
Q Consensus 790 L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp-~-----lp~~L~~L~~~~ 863 (1109)
|.+..|++.. +|..++ .-.|..||+++|++..||.++.++..|++|-|.+|+ |++-| + .-.-.++|++.-
T Consensus 194 l~vrRn~l~~--lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 194 LNVRRNHLED--LPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred HHHhhhhhhh--CCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchh
Confidence 7777777744 666666 334777777777777777777777777777777665 34433 1 112345666666
Q ss_pred C
Q 001277 864 C 864 (1109)
Q Consensus 864 C 864 (1109)
|
T Consensus 270 ~ 270 (722)
T KOG0532|consen 270 C 270 (722)
T ss_pred c
Confidence 6
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=1.1e-10 Score=123.44 Aligned_cols=200 Identities=22% Similarity=0.219 Sum_probs=124.2
Q ss_pred ccccCcCcEEEecCCCCCCcccc----cccCCCCCcEEeccCccCcccCCc-ccCCCCCcEEeeeccCCCcccCCCCCCC
Q 001277 617 LRRLQCLKNLTLSGCSKLKKFPE----SLGSMKDLMELFLDGTSIAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGL 691 (1109)
Q Consensus 617 l~~l~~L~~L~L~~~~~~~~~p~----~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l 691 (1109)
+-..+.|++|+||+|-.....+. .+.++..|++|+|.+|.+...... ++. .|..|. .+ ..+.+-
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~ 156 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASK 156 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCC
Confidence 44556777777777654443332 334556666666666666532211 110 111111 00 113345
Q ss_pred CCCcEEEecCCCCCc----ccCcccCCCCCccEEecCCCcccCC-----CccccccCCCcEEEccCCCCCCCCCCccccc
Q 001277 692 RSLKTLNLSGCSKLQ----NVPETLGQVESLEELDISGTAIRRP-----PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHF 762 (1109)
Q Consensus 692 ~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~~-----p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~ 762 (1109)
+.|+++....|.... .+...+...+.|+.+.+..|.|..- ...+..+++|+.|+|.+|..+...+
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs------ 230 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS------ 230 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH------
Confidence 678888777765322 1234456677888888888877642 3456788999999998876433211
Q ss_pred ccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcc---ccc-CCCCCCCEEeCCCCCCc-----ccchhhhccC
Q 001277 763 PFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIP---NDI-GNLCSLKQLNLSQNNFV-----TLPASINSLF 833 (1109)
Q Consensus 763 ~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp---~~l-~~l~~L~~L~Ls~n~l~-----~lp~~~~~l~ 833 (1109)
..+...++.+++|+.|++++|.+.....- ..+ ...|+|+.|.|.+|.++ .+-.++...+
T Consensus 231 ------------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 231 ------------VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP 298 (382)
T ss_pred ------------HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence 11233467788999999999998654321 122 34789999999999988 3455677789
Q ss_pred CCCceeccCCcC
Q 001277 834 NLGQLDLEDCKR 845 (1109)
Q Consensus 834 ~L~~L~L~~c~~ 845 (1109)
.|+.|+|++|..
T Consensus 299 dL~kLnLngN~l 310 (382)
T KOG1909|consen 299 DLEKLNLNGNRL 310 (382)
T ss_pred hhHHhcCCcccc
Confidence 999999999854
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=4.3e-10 Score=115.64 Aligned_cols=130 Identities=24% Similarity=0.275 Sum_probs=88.2
Q ss_pred CCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccccccccc
Q 001277 689 NGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMG 768 (1109)
Q Consensus 689 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~ 768 (1109)
...+.|++|+|++|. +..+.+++.-++.++.|+++.|.+..+-. +..+++|+.|+|++|......
T Consensus 281 dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~------------- 345 (490)
T KOG1259|consen 281 DTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECV------------- 345 (490)
T ss_pred chHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhh-------------
Confidence 345677888888765 44555666667778888888888777644 777788888888877533211
Q ss_pred ccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccc--hhhhccCCCCceeccCCcCc
Q 001277 769 QRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP--ASINSLFNLGQLDLEDCKRL 846 (1109)
Q Consensus 769 ~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~c~~L 846 (1109)
.+-..+-+.+.|.|+.|.+.+ + +.++.+-+|..|++++|++..+. .+|++||.|+.|.|.+|+.-
T Consensus 346 ----------Gwh~KLGNIKtL~La~N~iE~--L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 346 ----------GWHLKLGNIKTLKLAQNKIET--L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ----------hhHhhhcCEeeeehhhhhHhh--h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 111234467777888777632 2 45677778888888888887665 36788888888888887643
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.84 E-value=4e-09 Score=123.36 Aligned_cols=188 Identities=31% Similarity=0.471 Sum_probs=133.8
Q ss_pred ccccCcCcEEEecCCCCCCcccccccCCC-CCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCc
Q 001277 617 LRRLQCLKNLTLSGCSKLKKFPESLGSMK-DLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLK 695 (1109)
Q Consensus 617 l~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 695 (1109)
+..++.++.|++.++ ....+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|+ +..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 444566777777664 4455566666664 7777777777777777677778888888887754 455665555777888
Q ss_pred EEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCcc
Q 001277 696 TLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVA 775 (1109)
Q Consensus 696 ~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~ 775 (1109)
.|++++|. +..+|...+.+..|++|.+++|.+...+..+..++++..|.+.++....
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~---------------------- 246 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED---------------------- 246 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee----------------------
Confidence 88888765 5566666566666888888888777777778888888888776654322
Q ss_pred ccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccC
Q 001277 776 LMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLF 833 (1109)
Q Consensus 776 ~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~ 833 (1109)
++..+..+++|+.|++++|.+.. ++. ++.+.+|+.|++++|.+..++.......
T Consensus 247 -~~~~~~~l~~l~~L~~s~n~i~~--i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~~ 300 (394)
T COG4886 247 -LPESIGNLSNLETLDLSNNQISS--ISS-LGSLTNLRELDLSGNSLSNALPLIALLL 300 (394)
T ss_pred -ccchhccccccceeccccccccc--ccc-ccccCccCEEeccCccccccchhhhccc
Confidence 14456778889999999999855 554 8889999999999998887665444333
No 48
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=8.3e-09 Score=112.94 Aligned_cols=279 Identities=20% Similarity=0.251 Sum_probs=181.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
..|.+.++|.|||||||++-.+.. ++..|...+++.+....++... +...+...+.-.. .+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~----v~~~~ag~~gl~~----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPAL----VFPTLAGALGLHV----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhH----hHHHHHhhccccc----ccchHHHHHHHH
Confidence 458899999999999999999999 8888988887776666544322 1122222222110 222334556777
Q ss_pred HHcCCCCceEeccCCCHH-HHHHHHhcCCCCCCCcEEEEEeCCchhhHhhCCCccceEEcCCCCHH-HHHHHHHHhhhcC
Q 001277 287 RLRQKKVLLVIDDVADVE-QLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSND-EALQLFSMKAFKT 364 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~~-~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~ 364 (1109)
+..+++.++|+||-...- +-..+...+....+.-+|+.|+|... .+.....+.++.|+.. ++.++|...+...
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~-----l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~ 158 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI-----LVAGEVHRRVPSLSLFDEAIELFVCRAVLV 158 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh-----cccccccccCCccccCCchhHHHHHHHHHh
Confidence 888999999999986653 33344444444467778999999643 2233336788888766 7999998877432
Q ss_pred CCC---CchHHHHHHHHHHHhCCCchhHHHHhhhcCCCCHHHHHHHHHH----hhcC------CCChhHHHHHhhhcCCc
Q 001277 365 RQP---MGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLKR----LKKE------PPNRIINILQISFDGLQ 431 (1109)
Q Consensus 365 ~~~---~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~L~~sy~~L~ 431 (1109)
... .........+|++..+|.|++|..+++..+.....+-...+.. ++.. ........+.+||.-|.
T Consensus 159 ~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 159 ALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred ccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 211 2234467889999999999999999998877655544333322 2221 23456688899999999
Q ss_pred HHHHHHhhhhhcccCCCCHHHHHHHHHhCCC-----CcccchHHhhhccCeeEeC---CCeEehhHHHHHHhHhhh
Q 001277 432 DLEKKIFLDVACFFKSWDRDHVEKILEGCGF-----SPVIGIEVLIEKSLLTVDD---GNRLWMHDLLQELGHQIV 499 (1109)
Q Consensus 432 ~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~-----~~~~~l~~L~~~sLi~~~~---~~~~~mHdlv~~~~~~i~ 499 (1109)
..++..|-.++.|...|..+.....-....+ .....+..+++++++...+ ...++.-+-.+.|+-...
T Consensus 239 gwe~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred hHHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877632222111111 1123356788888876543 223444445555544443
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=4.4e-08 Score=106.44 Aligned_cols=241 Identities=21% Similarity=0.302 Sum_probs=135.8
Q ss_pred cccccccccchhhHH---HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLE---KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
|...+++||.+.-+. -|..++. +..+.-..+||++|+||||||+.++......|...--+ ..+ +.+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~g-vkd 88 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSG-VKD 88 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------ccc-HHH
Confidence 445566777665553 2444443 34566677999999999999999999877766421111 011 222
Q ss_pred HHHHHHHHHhhccCcccccccccHHHH-HHHHcCCCCceEeccCC--CHHHHHHHHhcCCCCCCCcEEEE--EeCCchhh
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINII-GSRLRQKKVLLVIDDVA--DVEQLQNLARKRDWFGPGSKIVI--TTRDKQLL 332 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~ 332 (1109)
+.+- ++.- +....+++.+|++|.|. +..|.+.|++.. ..|.-|+| ||-++...
T Consensus 89 lr~i-------------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ 146 (436)
T COG2256 89 LREI-------------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFE 146 (436)
T ss_pred HHHH-------------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCee
Confidence 2211 1122 23345899999999995 456777887764 57877776 67766432
Q ss_pred HhhC-CCccceEEcCCCCHHHHHHHHHHhhhcCCCCCc-----hHHHHHHHHHHHhCCCchhH----HHHhhhcCCC---
Q 001277 333 VAHE-VDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMG-----EYVELSKRVLKYAGGLPLAL----TVLGSFLNGR--- 399 (1109)
Q Consensus 333 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~-----~~~~~~~~i~~~~~GlPLal----~~l~~~L~~~--- 399 (1109)
.... .....++++++|+.+|-.+++.+-+........ -.++..+.+++.++|=--++ +.+.......
T Consensus 147 ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~ 226 (436)
T COG2256 147 LNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVL 226 (436)
T ss_pred ecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCccc
Confidence 1111 111238999999999999999884432222111 23456778888888865432 2332222222
Q ss_pred CHHHHHHHHHHhhc------CCCChhHHHHHhhhcCCcHHHHHHhhhhhcccCCCCHHHHHH
Q 001277 400 SVDLWRSTLKRLKK------EPPNRIINILQISFDGLQDLEKKIFLDVACFFKSWDRDHVEK 455 (1109)
Q Consensus 400 ~~~~w~~~l~~l~~------~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~ 455 (1109)
..+..+..+++-.. ...-++...+..|..+-++++.-.+ ..-++-.|.+..++.+
T Consensus 227 ~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyy-lARmi~~GeDp~yiAR 287 (436)
T COG2256 227 ILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYY-LARMIEAGEDPLYIAR 287 (436)
T ss_pred CHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHH-HHHHHhcCCCHHHHHH
Confidence 23444444443111 1123466777777777766543221 1123334555544433
No 50
>PRK06893 DNA replication initiation factor; Validated
Probab=98.67 E-value=5.6e-07 Score=95.99 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=90.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
.+.+.|+|++|+|||+||+++++....+.....|+... . ...... .+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~-------~~~~~~----------------------~~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-K-------SQYFSP----------------------AVLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-H-------hhhhhH----------------------HHHhh
Confidence 46789999999999999999999876655555665411 0 000000 11111
Q ss_pred HcCCCCceEeccCCCH---HHHH-HHHhcCCCC-CCCcEEEEEeCCc----------hhhHhhCCCccceEEcCCCCHHH
Q 001277 288 LRQKKVLLVIDDVADV---EQLQ-NLARKRDWF-GPGSKIVITTRDK----------QLLVAHEVDEEHIYNLEVLSNDE 352 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~---~~~~-~l~~~~~~~-~~gs~IiiTTR~~----------~v~~~~~~~~~~~~~l~~L~~~e 352 (1109)
+. +.-+|||||++.. .+|+ .+...++.. ..|..+||+|.+. .+........ ++++++++.++
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~--~~~l~~pd~e~ 165 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGE--IYQLNDLTDEQ 165 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCC--eeeCCCCCHHH
Confidence 22 2348999999763 2333 222222211 2456665554432 3444434333 89999999999
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 353 ALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 353 a~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
.++++.+.++...- .-.++...-|++.+.|-.-++..+
T Consensus 166 ~~~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 166 KIIVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 99999999875432 223466777788877766555433
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=9.1e-09 Score=106.09 Aligned_cols=126 Identities=29% Similarity=0.336 Sum_probs=99.0
Q ss_pred cCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEe
Q 001277 712 LGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLD 791 (1109)
Q Consensus 712 l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~ 791 (1109)
+.....|++|||++|.|+.+..++.-++.++.|+++.|..... ..+..+++|+.||
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v------------------------~nLa~L~~L~~LD 335 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV------------------------QNLAELPQLQLLD 335 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee------------------------hhhhhcccceEee
Confidence 3445679999999999999999999999999999999875543 2366788999999
Q ss_pred cCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcC--c---CcCCCCCCCcceEeccCCc
Q 001277 792 LSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKR--L---QSMPQLPSNLYEVQVNGCA 865 (1109)
Q Consensus 792 Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~--L---~~lp~lp~~L~~L~~~~C~ 865 (1109)
||+|.++. +..+-..+.+.+.|+|++|.+.++. +++.|.+|..||+++|+. + +.|..+ |.|+.+.+.+.|
T Consensus 336 LS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NP 410 (490)
T KOG1259|consen 336 LSGNLLAE--CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNP 410 (490)
T ss_pred cccchhHh--hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccc-cHHHHHhhcCCC
Confidence 99999854 5555567889999999999998886 789999999999998852 2 223233 355666665554
No 52
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=3.1e-08 Score=99.17 Aligned_cols=61 Identities=36% Similarity=0.465 Sum_probs=16.6
Q ss_pred CCCCCCEEecCCCCCCCCCccccc-CCCCCCCEEeCCCCCCcccc--hhhhccCCCCceeccCCcC
Q 001277 783 GLHSLSKLDLSDCGLGEGAIPNDI-GNLCSLKQLNLSQNNFVTLP--ASINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 783 ~l~~L~~L~Ls~~~l~~~~lp~~l-~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~c~~ 845 (1109)
.++.|++|++++|.++. +...+ ..+++|+.|+|++|++..+. ..+..+++|+.|+|.+||-
T Consensus 62 ~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 34444444444444432 22222 23445555555555444332 2334455555555555544
No 53
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.60 E-value=1.3e-07 Score=102.48 Aligned_cols=93 Identities=29% Similarity=0.475 Sum_probs=81.3
Q ss_pred CCCcccEEEccccccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEecccccc--------
Q 001277 10 FHGKYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYAS-------- 81 (1109)
Q Consensus 10 ~~~~~dvfis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~-------- 81 (1109)
.+++.|||||||... -+..++-+...|+-+||+||+|-+++..|. +.+.+.+.|..++.+|.|+|||.+.
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 468999999998764 578899999999999999999998999996 5568999999999999999999754
Q ss_pred chhhHHHHHHHHHhccCCceEEeEEe
Q 001277 82 STWCLDELVKIVECKKRDHEIFPIFY 107 (1109)
Q Consensus 82 s~~c~~El~~~~~~~~~~~~v~pv~~ 107 (1109)
-.|...|+..+++|.+ .|||||-
T Consensus 687 eDWVHKEl~~Afe~~K---NIiPI~D 709 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQK---NIIPIFD 709 (832)
T ss_pred HHHHHHHHHHHHHhcC---Ceeeeec
Confidence 4599999999999775 6999993
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=1.8e-08 Score=100.95 Aligned_cols=127 Identities=28% Similarity=0.312 Sum_probs=51.2
Q ss_pred CCCCCCcEEEecCCCCCcccCcccC-CCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccc
Q 001277 689 NGLRSLKTLNLSGCSKLQNVPETLG-QVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLM 767 (1109)
Q Consensus 689 ~~l~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l 767 (1109)
.+...+++|+|.||.... + +.++ .+.+|+.|++++|.++.++ .+..+++|+.|++++|.....
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i------------- 79 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSI------------- 79 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S--------------
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcc-------------
Confidence 356678999999987432 3 4565 5788999999999999885 577789999999999875432
Q ss_pred cccCCCccccCCCC-CCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch----hhhccCCCCceecc
Q 001277 768 GQRSYPVALMLPSL-SGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA----SINSLFNLGQLDLE 841 (1109)
Q Consensus 768 ~~~~~~~~~l~~~l-~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~----~~~~l~~L~~L~L~ 841 (1109)
.+.+ ..+++|++|+|++|++.+-.--..+..+++|+.|+|.+|.++..+. -+..+|+|+.||-.
T Consensus 80 ----------~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 80 ----------SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ----------CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ----------ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 1112 3478899999999998653334567789999999999998886552 35677777777764
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=2e-07 Score=104.32 Aligned_cols=73 Identities=29% Similarity=0.615 Sum_probs=49.3
Q ss_pred CCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEec
Q 001277 644 MKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDI 723 (1109)
Q Consensus 644 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 723 (1109)
+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|.. |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEe
Confidence 4556666666666776662 23468888888888888888655 357888888888766666643 566666
Q ss_pred CCCc
Q 001277 724 SGTA 727 (1109)
Q Consensus 724 ~~~~ 727 (1109)
+++.
T Consensus 120 ~~n~ 123 (426)
T PRK15386 120 KGSA 123 (426)
T ss_pred CCCC
Confidence 6544
No 56
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.56 E-value=3.2e-06 Score=100.93 Aligned_cols=252 Identities=15% Similarity=0.106 Sum_probs=128.6
Q ss_pred CcccccccccchhhHHHHHhhhcc---cCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-----cc-ceEEeeechhhhc
Q 001277 180 KPEILKELVGIDSRLEKLRFLIAT---ESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-----FD-GSTFLANVREKSE 250 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~-~~~~~~~~~~~~~ 250 (1109)
+..+++.+.|||.|+++|...|.. ++....++.|+|++|.|||+.++.|.+++... .+ ..+...++....
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls- 828 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV- 828 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC-
Confidence 344568899999999999888863 22333567899999999999999999876432 12 122222222211
Q ss_pred ccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHc---CCCCceEeccCCCHH--HHHHHHhcCCCC-CCCcEEEE
Q 001277 251 KEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR---QKKVLLVIDDVADVE--QLQNLARKRDWF-GPGSKIVI 324 (1109)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVLDdv~~~~--~~~~l~~~~~~~-~~gs~Iii 324 (1109)
....+...+..++............+....+...+. +...+||||+|+... .-+.|...+.|. ..+++|+|
T Consensus 829 ---tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 829 ---HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred ---CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 134455555566642221111122233344444332 224589999997653 212222212111 24555544
Q ss_pred --EeCCchh----hHhhCC-CccceEEcCCCCHHHHHHHHHHhhhcCCC-CCch-HHHHHHHHHHHhCCCchhHHHHhhh
Q 001277 325 --TTRDKQL----LVAHEV-DEEHIYNLEVLSNDEALQLFSMKAFKTRQ-PMGE-YVELSKRVLKYAGGLPLALTVLGSF 395 (1109)
Q Consensus 325 --TTR~~~v----~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~-~~~~~~~i~~~~~GlPLal~~l~~~ 395 (1109)
+|.+..+ ...... .....+..++++.+|..+++..++-.... ..++ .+-+|+.++...|..=.||.++-..
T Consensus 906 IGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred EEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 3332111 111110 01114677999999999999999853211 1222 2223333333334444555544333
Q ss_pred cC--C---CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhh
Q 001277 396 LN--G---RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVA 442 (1109)
Q Consensus 396 L~--~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a 442 (1109)
.. + ...+....+...+.. ..+.-....||.+.|-+++.+.
T Consensus 986 gEikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 986 FENKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HhhcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHHH
Confidence 21 1 123344444443322 1123334678888776665443
No 57
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.55 E-value=3.7e-06 Score=98.13 Aligned_cols=179 Identities=26% Similarity=0.369 Sum_probs=108.0
Q ss_pred cccccccccchhhHHH---HHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLEK---LRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
|....++||++..+.. +..++.. .....+.++|++|+||||||+.+++.....|.. +... ..+ ...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~-~~~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSG-VKD 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----ccc-HHH
Confidence 3445679999888766 7777753 345678899999999999999999877554321 1100 011 111
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHH-HHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEE--EeCCchh-
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGS-RLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVI--TTRDKQL- 331 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Iii--TTR~~~v- 331 (1109)
+ +.++.. ... ...+++.+|+||+++.. .+.+.|+..+. .|..++| ||.+...
T Consensus 77 i-r~ii~~------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~ 134 (413)
T PRK13342 77 L-REVIEE------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFE 134 (413)
T ss_pred H-HHHHHH------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhh
Confidence 1 111111 111 11357789999999765 45666665543 3555555 3444321
Q ss_pred -hHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCC-chHHHHHHHHHHHhCCCchhHHHHh
Q 001277 332 -LVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGGLPLALTVLG 393 (1109)
Q Consensus 332 -~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal~~l~ 393 (1109)
..... .....+++.+++.++..+++.+.+....... .-..+..+.+++.++|.|..+..+.
T Consensus 135 l~~aL~-SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 135 VNPALL-SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccHHHh-ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11111 1113799999999999999988654311111 2234677889999999997664443
No 58
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.48 E-value=2.9e-06 Score=90.92 Aligned_cols=173 Identities=20% Similarity=0.264 Sum_probs=101.2
Q ss_pred cccccc--chhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHH
Q 001277 184 LKELVG--IDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQ 261 (1109)
Q Consensus 184 ~~~~vG--r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1109)
.++|++ .+..++.+..++. ....+.+.|+|.+|+|||+||+.+++.........+++. +.... ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~----------~~ 80 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA----------QA 80 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH----------Hh
Confidence 345552 3445667777654 234578999999999999999999987654433344443 21111 00
Q ss_pred HHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH---H-HHHHHhcCCC-CCCCcEEEEEeCCch------
Q 001277 262 LLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE---Q-LQNLARKRDW-FGPGSKIVITTRDKQ------ 330 (1109)
Q Consensus 262 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~~------ 330 (1109)
. ..+ ...+. +.-+|||||++... . .+.+...+.. ...+.++|+||+...
T Consensus 81 ~-~~~------------------~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 81 D-PEV------------------LEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred H-HHH------------------Hhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence 0 000 01112 23489999997543 1 3333332211 123458899888532
Q ss_pred ---hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 001277 331 ---LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLG 393 (1109)
Q Consensus 331 ---v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 393 (1109)
+....... ..+++.+++.+|...++...+-... ..-..+..+.+++.+.|+|..+..+.
T Consensus 141 ~~~L~~r~~~~--~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 141 LPDLRTRLAWG--LVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred cHHHHHHHhcC--eeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 11111112 3799999999999999987653222 12233666788888999988776554
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=2e-06 Score=98.38 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=109.6
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEeeechhhhcccCChHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
|.....++|++..++.+..++..+ ..+.+.++|++|+||||+|+++++.+..+ +...+...++....... ...+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~--~~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG--KKYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc--hhhhh
Confidence 444578899999999999888643 34467899999999999999999877533 22222222222111000 00000
Q ss_pred H--HHHHHHhhccCcccccccccHHH-HHHHH-----cCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 260 K--QLLSDLLKLADISIWNVDDGINI-IGSRL-----RQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 260 ~--~ll~~l~~~~~~~~~~~~~~~~~-l~~~L-----~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
. .....+....... ....+.... ++... ...+-+|||||++... ..+.+...+......+++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 87 EDPRFAHFLGTDKRIR-SSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred cCcchhhhhhhhhhhc-cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 0000000000000 000011111 11111 1334589999997552 2344444333334567888887543
Q ss_pred h-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 330 Q-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 330 ~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
. +..... .....+++.+++.++..+++...+-..... -..+..+.+++.++|.+-.+.
T Consensus 166 ~~~~~~L~-sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIR-SRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhc-CCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2 222211 112378999999999999998876433322 234677888899988765543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.48 E-value=4.3e-07 Score=101.64 Aligned_cols=161 Identities=22% Similarity=0.369 Sum_probs=95.2
Q ss_pred ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCC-cccCCCccccccCCCc
Q 001277 664 IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGT-AIRRPPSSIFVMNNLK 742 (1109)
Q Consensus 664 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~~p~~l~~l~~L~ 742 (1109)
+..+.++..|++++| .+..+|. -..+|++|.+++|..+..+|..+. .+|+.|++++| .+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 445688999999998 7888883 235799999999999888887653 57888988887 6665554 466
Q ss_pred EEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCC-CCCCcccccCCCCCCCEEeCCCCC
Q 001277 743 TLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGL-GEGAIPNDIGNLCSLKQLNLSQNN 821 (1109)
Q Consensus 743 ~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l-~~~~lp~~l~~l~~L~~L~Ls~n~ 821 (1109)
.|++.++.... +..+|+ +|+.|.+.+++. ....+|. .-.++|++|++++|.
T Consensus 116 ~L~L~~n~~~~--------------------L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 116 SLEIKGSATDS--------------------IKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCS 167 (426)
T ss_pred eEEeCCCCCcc--------------------cccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCC
Confidence 66665332110 111222 466666644321 1111111 112567777777776
Q ss_pred CcccchhhhccCCCCceeccCCc--CcC-cCCCCCCCcceEeccCCccc
Q 001277 822 FVTLPASINSLFNLGQLDLEDCK--RLQ-SMPQLPSNLYEVQVNGCASL 867 (1109)
Q Consensus 822 l~~lp~~~~~l~~L~~L~L~~c~--~L~-~lp~lp~~L~~L~~~~C~~L 867 (1109)
...+|..+. .+|+.|+++.|. .+. ..+.+|+++ .|.+.+|-.+
T Consensus 168 ~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 168 NIILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred cccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 555554332 467777766542 111 122455666 6666666443
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.46 E-value=2.8e-06 Score=86.89 Aligned_cols=179 Identities=25% Similarity=0.315 Sum_probs=99.4
Q ss_pred CcccccccccchhhHHHHHhhhcc---cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChH
Q 001277 180 KPEILKELVGIDSRLEKLRFLIAT---ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVV 256 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 256 (1109)
.|...++|||.+.-++.+.-++.. ......-+.+||++|.||||||..+++.....|. .... ...+.. .
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg--~~i~k~---~ 90 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG--PAIEKA---G 90 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC--CC--SC---H
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc--hhhhhH---H
Confidence 345678999999999887766552 2345677889999999999999999998887663 1110 000111 1
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCC--------CCCC-------
Q 001277 257 SLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDW--------FGPG------- 319 (1109)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~--------~~~g------- 319 (1109)
++ ...+ ..+ +++-+|++|++... .+-+.|.+.... .+++
T Consensus 91 dl----------------------~~il-~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 91 DL----------------------AAIL-TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp HH----------------------HHHH-HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred HH----------------------HHHH-Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 11 1111 112 24557888999665 344444443211 1222
Q ss_pred ----cEEEEEeCCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 320 ----SKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 320 ----s~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
+-|=-|||...+.....-.-..+.+++..+.+|-.++..+.+..-. .+-.++.+.+|++.+.|-|--..-+
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 2344588875543333222223568999999999999988774322 3345688999999999999654433
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=7.6e-06 Score=93.73 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=111.1
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....+++|.+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... ....+ .-....
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc~-~c~~c~ 80 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPCR-KCIICK 80 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCC-CCHHHH
Confidence 445678999999999998888643 2346678999999999999999998764211000 00000 000000
Q ss_pred HHHHH----HhhccCcccccccccHHHHHHHH-----cCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 261 QLLSD----LLKLADISIWNVDDGINIIGSRL-----RQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 261 ~ll~~----l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
++... +..-........++ +..+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+.
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred HHhcCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 00000 00000000000000 11111111 2345589999998764 4667776665555677777777654
Q ss_pred h-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 330 Q-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 330 ~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
. +..... .....+++.+++.++..+.+...+-.... .-..+.++.|++.++|.|-.+
T Consensus 160 ~~l~~tI~-SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 160 EKIPKTIL-SRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HhhhHHHH-hhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3 222211 11238999999999999998887644332 123356788999999988643
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.5e-09 Score=110.40 Aligned_cols=105 Identities=23% Similarity=0.233 Sum_probs=68.3
Q ss_pred CCcEEeccCccCc--ccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccC--cccCCCCCccEE
Q 001277 646 DLMELFLDGTSIA--EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVP--ETLGQVESLEEL 721 (1109)
Q Consensus 646 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L 721 (1109)
.|++|||++..|+ .+..-+..+.+|+.|.|.++..-..+...|.+-.+|+.|+|++|+.+.... -.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3666666666665 444456677888888888877666666667777888888888888665433 235677778888
Q ss_pred ecCCCcccCC--Cccccc-cCCCcEEEccCCC
Q 001277 722 DISGTAIRRP--PSSIFV-MNNLKTLSFSGCN 750 (1109)
Q Consensus 722 ~L~~~~i~~~--p~~l~~-l~~L~~L~L~~c~ 750 (1109)
+|++|.+... ...+.+ -.+|+.|+|+||.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 8887766543 111111 2466777777764
No 64
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=6.9e-06 Score=97.91 Aligned_cols=194 Identities=18% Similarity=0.219 Sum_probs=113.1
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+++.+...-.. . ....+ .-....
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~----~-----~~PCG-~C~sCr 80 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----T-----SQPCG-VCRACR 80 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCC----C-----CCCCc-ccHHHH
Confidence 445678999999999999988643 234566799999999999999999866421000 0 00000 000000
Q ss_pred HHHH----HHhhccCcccccccccHHHHHHHH--------cCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEe
Q 001277 261 QLLS----DLLKLADISIWNVDDGINIIGSRL--------RQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITT 326 (1109)
Q Consensus 261 ~ll~----~l~~~~~~~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTT 326 (1109)
.+.. ++.+-.. .....++.+++.+ .++.-++|||+++... .++.|+..+.......++|+||
T Consensus 81 ~I~~G~h~DviEIDA----as~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 81 EIDEGRFVDYVEMDA----ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHhcCCCceEEEecc----cccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 0000 0000000 0001111122111 2344588899998764 3677776665455688888888
Q ss_pred CCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch-hHHH
Q 001277 327 RDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL-ALTV 391 (1109)
Q Consensus 327 R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 391 (1109)
++.+-....-......++++.++.++..+.+.+.+-.... .-..+..+.|++.++|..- |+..
T Consensus 157 td~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 157 TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8764321111112237999999999999999887643322 2234677889999988653 4444
No 65
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=9.7e-06 Score=95.75 Aligned_cols=194 Identities=19% Similarity=0.150 Sum_probs=112.4
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+...+.|..++..+ .-...+.++|+.|+||||+|+.+++.+..... .. ....+ .-...+
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~-----~~pCg-~C~sC~ 79 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT-----STPCE-VCATCK 79 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC-----CCCCc-cCHHHH
Confidence 445678999999999999988643 23467789999999999999999987642110 00 00000 000000
Q ss_pred HHHHHHhhccCccc--ccccccHHHHHHHH--------cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 261 QLLSDLLKLADISI--WNVDDGINIIGSRL--------RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~--~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
.+... ...+... ......+..+++.+ .++.-++|||+|+.. ...+.|+..+.....+.++|++|.+
T Consensus 80 ~I~~g--~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 80 AVNEG--RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred HHhcC--CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 00000 0000000 00001122222211 245568999999765 3566666665544567788888876
Q ss_pred chhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 329 KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 329 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
..-....-......+++++++.++..+.+.+.+-.... ....+....|++.++|-+-.+
T Consensus 158 ~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 158 PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 43221111122238999999999999999887744332 223466788999999977543
No 66
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.3e-05 Score=90.97 Aligned_cols=202 Identities=11% Similarity=0.047 Sum_probs=112.7
Q ss_pred CcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc--cceEE-e--eechhhhcccCC
Q 001277 180 KPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF--DGSTF-L--ANVREKSEKEGS 254 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~-~--~~~~~~~~~~~~ 254 (1109)
.|....++||.+...+.|.+.+..+ .-...+.++|+.|+||||+|..+++.+-.+- ..... . ..+. .....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c-- 89 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDH-- 89 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCC--
Confidence 3556678999999999998888643 2345688999999999999999998653211 10000 0 0000 00000
Q ss_pred hHHHHHHHHHHHh------hc-c-Ccc-cccccccHHHHHH---HH-----cCCCCceEeccCCCH--HHHHHHHhcCCC
Q 001277 255 VVSLQKQLLSDLL------KL-A-DIS-IWNVDDGINIIGS---RL-----RQKKVLLVIDDVADV--EQLQNLARKRDW 315 (1109)
Q Consensus 255 ~~~l~~~ll~~l~------~~-~-~~~-~~~~~~~~~~l~~---~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~ 315 (1109)
...+.+..... .. . +.. .....-.++.+++ .+ .+++-++|||+++.. .....|+..+..
T Consensus 90 --~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 90 --PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred --hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 01111100000 00 0 000 0000011233333 22 245678999999754 446666665554
Q ss_pred CCCCcEEEEEeCCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 001277 316 FGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLG 393 (1109)
Q Consensus 316 ~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 393 (1109)
...++.+|++|.+.......-......+.+.+++.++..+++...... . ..+....++..++|.|+....+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~---~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L---PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 445677777777654322111222338999999999999999876411 1 11223678999999998665553
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.4e-06 Score=98.68 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=112.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc--cccceEEeeec-hhhhc-ccCChH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH--EFDGSTFLANV-REKSE-KEGSVV 256 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~-~~~~~-~~~~~~ 256 (1109)
|....+++|.+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...|+.+.. +.... .+..+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 4456788999999899988886432 3456799999999999999999987642 22222222110 00000 000000
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 257 SLQKQLLSDLLKLADISIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
. +..... ...+. +..+.+.+ .+++-++|||+++.. ..++.|+..+....+...+|++|...
T Consensus 89 e--------l~~~~~---~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~ 156 (504)
T PRK14963 89 E--------IDAASN---NSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEP 156 (504)
T ss_pred E--------eccccc---CCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCCh
Confidence 0 000000 00111 11122211 245668999999755 45777776665444566666666543
Q ss_pred -hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 330 -QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 330 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
.+..... .....+++.+++.++..+.+.+.+-..... ...+....|++.++|.+--+
T Consensus 157 ~kl~~~I~-SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 157 EKMPPTIL-SRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hhCChHHh-cceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3322221 112389999999999999999887543322 23467788999999988644
No 68
>PTZ00202 tuzin; Provisional
Probab=98.37 E-value=1.9e-05 Score=87.81 Aligned_cols=198 Identities=17% Similarity=0.261 Sum_probs=117.3
Q ss_pred HhhccCccCCC--Cchhhh-HhhHHHHHhhhc-------cCCcccccccccchhhHHHHHhhhccc-CCCeeEEEEEecC
Q 001277 149 VANKSGWELKD--SNESEF-IDEIVNVISNKI-------RTKPEILKELVGIDSRLEKLRFLIATE-SSDVRMMGIWGMG 217 (1109)
Q Consensus 149 ~a~~~g~~~~~--~~e~~~-i~~iv~~i~~~l-------~~~~~~~~~~vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~g 217 (1109)
++..-||.+++ +.+..+ .+--++.+.+.. ...|.....|+||+.+++.|...|... ....+++.|+|++
T Consensus 216 v~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~ 295 (550)
T PTZ00202 216 VASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFR 295 (550)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCC
Confidence 44556777665 222221 233334444443 246778899999999999999999632 3345699999999
Q ss_pred CchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH-----c-CC
Q 001277 218 GLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-----R-QK 291 (1109)
Q Consensus 218 GiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~-~k 291 (1109)
|+|||||++.+..... ...++.+.+ + ..+++..++.+++.... ....++...|.+.+ . ++
T Consensus 296 G~GKTTLlR~~~~~l~----~~qL~vNpr------g-~eElLr~LL~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~Gr 361 (550)
T PTZ00202 296 GCGKSSLCRSAVRKEG----MPAVFVDVR------G-TEDTLRSVVKALGVPNV---EACGDLLDFISEACRRAKKMNGE 361 (550)
T ss_pred CCCHHHHHHHHHhcCC----ceEEEECCC------C-HHHHHHHHHHHcCCCCc---ccHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999987654 225555443 2 56788888888874222 12234455555544 2 56
Q ss_pred CCceEeccC--CCHHH-HHHHHhcCCCCCCCcEEEEEeCCchhhHhh-CCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 292 KVLLVIDDV--ADVEQ-LQNLARKRDWFGPGSKIVITTRDKQLLVAH-EVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 292 ~~LlVLDdv--~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
+.+|||-== .+..- ..+.+ .+..-..-++|++----+.+.... ....-.-|.++.++.++|.++-.+..
T Consensus 362 tPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 362 TPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 777776532 22221 11111 111123457777765544432221 11122268999999999999876543
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=98.37 E-value=6.7e-06 Score=97.97 Aligned_cols=181 Identities=18% Similarity=0.232 Sum_probs=108.3
Q ss_pred cccccccccchhhHHHHHhhhccc--CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATE--SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSL 258 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 258 (1109)
|....+++|.+..++.+..|+..- +...+.+.|+|++|+||||+|+++++.+. ++. +.+ +. + +.. ....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-na---s-d~r-~~~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-NA---S-DQR-TADV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-cc---c-ccc-cHHH
Confidence 445678999999999999998632 22367899999999999999999999773 221 111 11 1 111 1111
Q ss_pred HHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH------HHHHHHhcCCCCCCCcEEEEEeCCch-h
Q 001277 259 QKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE------QLQNLARKRDWFGPGSKIVITTRDKQ-L 331 (1109)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~IiiTTR~~~-v 331 (1109)
...+........ .....++-+||||+++... .++.+...+. ..+..||+|+.+.. .
T Consensus 81 i~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~ 143 (482)
T PRK04195 81 IERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcccc
Confidence 222222111100 0011367799999997652 2444544333 23445666665432 1
Q ss_pred hH-hhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 332 LV-AHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 332 ~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
.. ... .....+++.+++.++....+...+....... ..+....|++.++|-.-.+.
T Consensus 144 ~~k~Lr-sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 144 SLRELR-NACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred chhhHh-ccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 11 111 1123799999999999999888775433222 24678889999998766543
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.36 E-value=2.9e-06 Score=97.46 Aligned_cols=174 Identities=16% Similarity=0.225 Sum_probs=100.3
Q ss_pred cccccccchhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 183 ILKELVGIDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
...++.|++..+++|.+.+... -...+-+.++|++|+|||++|+++++.....|-.. .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v-----~------ 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV-----V------ 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec-----c------
Confidence 4467899999999998776421 12245689999999999999999999776543211 0
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHH-HcCCCCceEeccCCCHH----------------HHHHHHhcCC
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR-LRQKKVLLVIDDVADVE----------------QLQNLARKRD 314 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~ 314 (1109)
...+...... ........+.+. -...+.+|+||+++... .+..++..+.
T Consensus 189 ---~~~l~~~~~g-----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 189 ---GSELVRKYIG-----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD 254 (364)
T ss_pred ---hHHHHHHhhh-----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence 0001100000 000011111111 13467899999987541 1333333222
Q ss_pred CC--CCCcEEEEEeCCchhhHh-----hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 315 WF--GPGSKIVITTRDKQLLVA-----HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 315 ~~--~~gs~IiiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
.. ..+.+||.||........ ...+. .++++..+.++..++|..++.+.....+. ....+++.+.|..
T Consensus 255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~--~i~v~~P~~~~r~~Il~~~~~~~~l~~~~---~~~~la~~t~g~s 328 (364)
T TIGR01242 255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDR--IIEVPLPDFEGRLEILKIHTRKMKLAEDV---DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCCEEEEEecCChhhCChhhcCcccCce--EEEeCCcCHHHHHHHHHHHHhcCCCCccC---CHHHHHHHcCCCC
Confidence 21 246778888875432211 12233 79999999999999999887553322211 1355666776654
No 71
>PF13173 AAA_14: AAA domain
Probab=98.35 E-value=1.2e-06 Score=84.43 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=75.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 288 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1109)
+++.|.|+.|+|||||++.++.... .-...+++. ..... .... .+.+ ..+.+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~-----~~~~----------------~~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPR-----DRRL----------------ADPD-LLEYFLELI 58 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHH-----HHHH----------------hhhh-hHHHHHHhh
Confidence 6899999999999999999998765 222233432 11110 0000 0000 222333333
Q ss_pred cCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhhHhh----CCCccceEEcCCCCHHH
Q 001277 289 RQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAH----EVDEEHIYNLEVLSNDE 352 (1109)
Q Consensus 289 ~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~----~~~~~~~~~l~~L~~~e 352 (1109)
..++.+|+||+|.....|...+..+...++..+|++|+......... -.+....+++.||+-.|
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 34778999999988888777666555445678999999987655331 11222368999998776
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=98.33 E-value=1.2e-05 Score=90.69 Aligned_cols=184 Identities=15% Similarity=0.213 Sum_probs=107.0
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc-cccceEEeeechhhhcccCChHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
|....+++|.+..++.|..++..+ ..+-+.++|++|+||||+|+++++.+.. .|...+.-.+ .++..+ .. ..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~-~~-~v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRG-ID-VV 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---cccccc-HH-HH
Confidence 455678899998888888877533 3445779999999999999999987632 2322111111 011111 21 11
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhC
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHE 336 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~ 336 (1109)
+............ . -.++.-++|||+++... ..+.|.......+..+++|+++.... +.....
T Consensus 82 r~~i~~~~~~~~~----~----------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 82 RNKIKMFAQKKVT----L----------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred HHHHHHHHhcccc----C----------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 2221111110000 0 01345689999997653 34445444433456678887775432 211111
Q ss_pred CCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 337 VDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 337 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
. ....++++++++++..+.+...+-...... ..+....|++.++|-.-.
T Consensus 148 S-Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 148 S-RCAIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred H-hhhcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 0 112799999999999999988774433222 235678888999887643
No 73
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.31 E-value=1.6e-06 Score=89.64 Aligned_cols=50 Identities=32% Similarity=0.502 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 186 ELVGIDSRLEKLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+||||+.+++++...+. ......+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 234457899999999999999999999988776
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.31 E-value=2.1e-05 Score=89.10 Aligned_cols=185 Identities=15% Similarity=0.225 Sum_probs=107.9
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....+++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++.+........++. +. .+...+ .. ...
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~-~~-~~~ 86 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERG-ID-VIR 86 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccc-hH-HHH
Confidence 344567899999999999988643 3445799999999999999999987643311111221 10 011111 11 111
Q ss_pred HHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc-hhhHhhCC
Q 001277 261 QLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEV 337 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~ 337 (1109)
..+.++...... ....+-++++|+++.. +..+.+...+....+.+++|+++... .+.....
T Consensus 87 ~~i~~~~~~~~~---------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~- 150 (319)
T PRK00440 87 NKIKEFARTAPV---------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ- 150 (319)
T ss_pred HHHHHHHhcCCC---------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH-
Confidence 111111110000 0123458999998754 33445555444445667787777532 2211110
Q ss_pred CccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 338 DEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
.....+++.+++.++....+...+...... -..+....+++.++|.+--+
T Consensus 151 sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHhheeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 111278999999999999998877543321 23466788899999987653
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.1e-05 Score=92.85 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=110.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+...-....-.. .....-..+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC------g~C~sC~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC------NECTSCLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc------CCCcHHHHHHc
Confidence 4456789999999999988886432 2346789999999999999999986643211000000 00000000000
Q ss_pred HHHHHHhh---ccCcccccccccHHHHHHH-HcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc-hhhH
Q 001277 261 QLLSDLLK---LADISIWNVDDGINIIGSR-LRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLV 333 (1109)
Q Consensus 261 ~ll~~l~~---~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~ 333 (1109)
....++.. .......++.+..+.+... ..++.-++|||+++.. +.++.|+..+........+|++|.+. .+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 00000000 0000001111111111111 2345669999999765 45777777665434555656555543 3322
Q ss_pred hhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 334 AHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 334 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
... .....|.+.+++.++..+.+.+.+-... ..-..+....|++.++|.+-
T Consensus 167 TI~-SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 167 TIL-SRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHH-hhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHH
Confidence 221 1112799999999999999888764432 22234678899999999985
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.30 E-value=1.9e-08 Score=109.02 Aligned_cols=262 Identities=21% Similarity=0.299 Sum_probs=121.0
Q ss_pred CCCCcceEEEecCCCCCCccc-ccccCCcCCcceeeccc-cCCccc--cccccccCCCcEEeCCCCcCCcc--ccccccc
Q 001277 546 ISMKSLKTLVLSGCLKLTKKC-LEFAGSMNDLSELFLDR-TTIEEL--PLSIQHLTGLVLLNLKDCKNLKS--LSHTLRR 619 (1109)
Q Consensus 546 ~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~L~~L~L~~-~~l~~l--~~~~~~l~~L~~L~L~~~~~l~~--lp~~l~~ 619 (1109)
..++++..|.+.+|.++++.. ..+...+..|+.|++.. ..++.. -.....+++|++|+++.|..+.. +.....+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 356667777777776555431 12233455566666663 445422 11234566777777777665443 1122334
Q ss_pred cCcCcEEEecCCCCCCc--ccccccCCCCCcEEeccCccC-cccC--CcccCCCCCcEEeeeccCCCcccC--CCCCCCC
Q 001277 620 LQCLKNLTLSGCSKLKK--FPESLGSMKDLMELFLDGTSI-AEVP--SSIELLTGLQLLNLNNCSNLVRLP--SCINGLR 692 (1109)
Q Consensus 620 l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~L~~~~i-~~lp--~~i~~l~~L~~L~L~~c~~l~~lp--~~i~~l~ 692 (1109)
+..|+.+.+.||...+. +-..-+.+.-+..+++..+.. +... ..-..+..||.|..++|......+ ....+..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 55566666666633221 111112222333333333321 1111 011234455556555555433221 1122345
Q ss_pred CCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCC
Q 001277 693 SLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSY 772 (1109)
Q Consensus 693 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~ 772 (1109)
+|+.|.+++|..++..-- ..--.+.+.|+.|++.+|.......
T Consensus 321 ~L~~l~l~~c~~fsd~~f---------------------t~l~rn~~~Le~l~~e~~~~~~d~t---------------- 363 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGF---------------------TMLGRNCPHLERLDLEECGLITDGT---------------- 363 (483)
T ss_pred ceEEEeccccchhhhhhh---------------------hhhhcCChhhhhhcccccceehhhh----------------
Confidence 555555555554332110 0001234455555555554322210
Q ss_pred CccccCCCCCCCCCCCEEecCCCCCCCCC----cccccCCCCCCCEEeCCCCCCc--ccchhhhccCCCCceeccCCcCc
Q 001277 773 PVALMLPSLSGLHSLSKLDLSDCGLGEGA----IPNDIGNLCSLKQLNLSQNNFV--TLPASINSLFNLGQLDLEDCKRL 846 (1109)
Q Consensus 773 ~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~----lp~~l~~l~~L~~L~Ls~n~l~--~lp~~~~~l~~L~~L~L~~c~~L 846 (1109)
+...-.+++.|+.|.|++|.+..+. +...-..+..|+.|.|+++... ..-..+..+++|+++++-+|...
T Consensus 364 ----L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 364 ----LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ----HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 1111234566666666666543221 1112234556677777776543 22234566667777777777665
Q ss_pred Cc
Q 001277 847 QS 848 (1109)
Q Consensus 847 ~~ 848 (1109)
..
T Consensus 440 tk 441 (483)
T KOG4341|consen 440 TK 441 (483)
T ss_pred hh
Confidence 44
No 77
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.29 E-value=6.6e-08 Score=102.75 Aligned_cols=64 Identities=25% Similarity=0.447 Sum_probs=32.6
Q ss_pred CCCCCCCCEEecCCCCCCCCCc---ccccCCCCCCCEEeCCCCCCc-----ccchhhhccCCCCceeccCCc
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAI---PNDIGNLCSLKQLNLSQNNFV-----TLPASINSLFNLGQLDLEDCK 844 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~l---p~~l~~l~~L~~L~Ls~n~l~-----~lp~~~~~l~~L~~L~L~~c~ 844 (1109)
+...+.|+.+.++.|.+....+ -..+..+++|+.|+|..|.|+ .+...+..+++|+.|++++|.
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3344556666666655533222 123445566666666666555 233344555556666665553
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=7.3e-06 Score=96.49 Aligned_cols=196 Identities=16% Similarity=0.180 Sum_probs=112.0
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc-cceEEeeechhhhcccCChHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
|....++||.+.-++.|...+..+ .-.+.+.++|..|+||||+|+.+++.+-..- +..--+. ....+ .-...
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG-~C~sC 84 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCG-QCRAC 84 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCc-ccHHH
Confidence 445678999999999999888643 2345678999999999999999998664210 0000000 00000 00000
Q ss_pred HHHHH----HHhhccCcccccccccHHHHHHHH--------cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEE
Q 001277 260 KQLLS----DLLKLADISIWNVDDGINIIGSRL--------RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVIT 325 (1109)
Q Consensus 260 ~~ll~----~l~~~~~~~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiT 325 (1109)
..+.. ++..-. ......++.+++.+ .++.-++|||+++.. ...+.|+..+..-..+.++|++
T Consensus 85 ~~I~aG~hpDviEId----Aas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa 160 (700)
T PRK12323 85 TEIDAGRFVDYIEMD----AASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160 (700)
T ss_pred HHHHcCCCCcceEec----ccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE
Confidence 00000 000000 00001122222211 345568999999765 4577787776655566776666
Q ss_pred eCCc-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 326 TRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 326 TR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
|.+. .+..... .....+.++.++.++..+.+.+.+-.... ....+..+.|++.++|.|....
T Consensus 161 Ttep~kLlpTIr-SRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 161 TTDPQKIPVTVL-SRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred eCChHhhhhHHH-HHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 6554 3322211 11127999999999999998877643322 2223556889999999986443
No 79
>PRK08727 hypothetical protein; Validated
Probab=98.28 E-value=2.3e-05 Score=83.78 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=94.5
Q ss_pred ccccccchh-hHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHH
Q 001277 184 LKELVGIDS-RLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQL 262 (1109)
Q Consensus 184 ~~~~vGr~~-~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1109)
.++||+... .+..+..+.. + .....+.|+|.+|+|||+||+++++....+.....|+. . ......+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~----------~~~~~~~ 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-L----------QAAAGRL 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-H----------HHhhhhH
Confidence 345665443 3344443332 1 22356999999999999999999987766544445553 1 1111110
Q ss_pred HHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH---HH-HHHHhcCCC-CCCCcEEEEEeCCch-------
Q 001277 263 LSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE---QL-QNLARKRDW-FGPGSKIVITTRDKQ------- 330 (1109)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IiiTTR~~~------- 330 (1109)
. .+.+.+ .+.-+|||||++... .+ +.+...+.. ...|..||+|++...
T Consensus 85 ~-------------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~ 144 (233)
T PRK08727 85 R-------------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVL 144 (233)
T ss_pred H-------------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhh
Confidence 0 011111 233589999996431 12 223222211 134677999998532
Q ss_pred --hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 331 --LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 331 --v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
+....... ..+++++++.++..+++.+++.... ..-..+...-|++.+.|-.-.
T Consensus 145 ~dL~SRl~~~--~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 145 PDLRSRLAQC--IRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHHHHhcC--ceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHH
Confidence 11111122 3899999999999999998775432 122335566677777654443
No 80
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=1.4e-06 Score=106.94 Aligned_cols=105 Identities=28% Similarity=0.419 Sum_probs=66.5
Q ss_pred CcEEEecCCCCCCcccccccCCCCCcEEeccCccCc-ccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecC
Q 001277 623 LKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSG 701 (1109)
Q Consensus 623 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~ 701 (1109)
++.|+|++|.....+|..++++++|+.|+|++|.+. .+|..++.+++|+.|+|++|.....+|..++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666555566666666666666666666665 5566666666666666666666666666666666666666666
Q ss_pred CCCCcccCcccCCC-CCccEEecCCCc
Q 001277 702 CSKLQNVPETLGQV-ESLEELDISGTA 727 (1109)
Q Consensus 702 c~~l~~lp~~l~~l-~~L~~L~L~~~~ 727 (1109)
|...+.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 66666666665542 345566666654
No 81
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.7e-05 Score=96.56 Aligned_cols=198 Identities=18% Similarity=0.143 Sum_probs=113.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-c-cc-eEEeee-chhhhcc-cCCh
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-F-DG-STFLAN-VREKSEK-EGSV 255 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~-~~~~~~-~~~~~~~-~~~~ 255 (1109)
|....++||.+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+... . .. .|..+. +...... +..+
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 345678999999999998888643 223456899999999999999999876432 1 00 011000 0000000 0000
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHH-HHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch-h
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGS-RLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-L 331 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v 331 (1109)
. ++.........++.+++..+.. -..+++-++|||+++.. +..+.|+..+.......++|++|.+.. +
T Consensus 91 i--------EidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 91 I--------EVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred E--------EeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 0 0000000000001111111111 12356779999999765 457777776655556777777666543 3
Q ss_pred hHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 332 LVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
...... ....|++++|+.++..+++.+.+-... .....+..+.|++.++|.|--+.
T Consensus 163 l~TIlS-RCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 163 PVTVLS-RCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred hHHHHH-hheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 222111 123899999999999999988764322 22234677889999999886433
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=6.6e-06 Score=98.13 Aligned_cols=191 Identities=18% Similarity=0.180 Sum_probs=109.4
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-..-... ... .+ .-....
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p--------Cg-~C~sCr 80 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP--------CG-VCQSCT 80 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC--------Cc-ccHHHH
Confidence 445678999999999999988743 2345788999999999999999988653221000 000 00 000000
Q ss_pred HHHH----HHhhccCcccccccccHHHHHHHH--------cCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEe
Q 001277 261 QLLS----DLLKLADISIWNVDDGINIIGSRL--------RQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITT 326 (1109)
Q Consensus 261 ~ll~----~l~~~~~~~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTT 326 (1109)
.+.. ++..-. ......++.+++.+ .+++-++|||+++... ..+.|+..+.......++|++|
T Consensus 81 ~i~~g~~~DvlEid----aAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 81 QIDAGRYVDLLEID----AASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred HHhccCccceEEEe----ccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 0000 000000 00001112222221 2455689999997654 3555555544334567777777
Q ss_pred CCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 327 RDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 327 R~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
.+.. +.... ......+++..++.++..+.+.+.+-.... .-..+..+.|++.++|.+.-+
T Consensus 157 td~~kL~~TI-rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 157 TDPHKVPVTV-LSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CCccccchHH-HHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHH
Confidence 6543 22111 111126888999999999999887754332 223466789999999988544
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.6e-06 Score=106.40 Aligned_cols=105 Identities=29% Similarity=0.401 Sum_probs=71.9
Q ss_pred CcEEeccCccCc-ccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCC
Q 001277 647 LMELFLDGTSIA-EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISG 725 (1109)
Q Consensus 647 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 725 (1109)
++.|+|+++.+. .+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777765 5666677777777777777766667777777777777777777776667777777777777777777
Q ss_pred CcccC-CCcccccc-CCCcEEEccCCCC
Q 001277 726 TAIRR-PPSSIFVM-NNLKTLSFSGCNG 751 (1109)
Q Consensus 726 ~~i~~-~p~~l~~l-~~L~~L~L~~c~~ 751 (1109)
|.+.+ +|..+..+ .++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 77664 36555542 4556666666653
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=6.8e-05 Score=87.96 Aligned_cols=198 Identities=21% Similarity=0.195 Sum_probs=106.6
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc----ccceEEee-echhhhcccCCh
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE----FDGSTFLA-NVREKSEKEGSV 255 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~-~~~~~~~~~~~~ 255 (1109)
|....++||.+...+.|...+..+ .-.+.+.++|++|+||||+|+.+++.+... +..+ -.. .........
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc-~~c~~c~~i~~g~--- 84 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC-NECRACRSIDEGT--- 84 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC-cccHHHHHHhcCC---
Confidence 445678999998888888777533 223567899999999999999999865321 0000 000 000000000
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHH-----HcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSR-----LRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
...+..-........++ +..+.+. ..+++-++|+|+++.. ++.+.|+..+...+....+|++|.+
T Consensus 85 -------~~dv~el~aa~~~gid~-iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn 156 (472)
T PRK14962 85 -------FMDVIELDAASNRGIDE-IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN 156 (472)
T ss_pred -------CCccEEEeCcccCCHHH-HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 00000000000000000 0111111 1245669999999765 3456666655433444555555544
Q ss_pred -chhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC-chhHHHHhh
Q 001277 329 -KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL-PLALTVLGS 394 (1109)
Q Consensus 329 -~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l~~ 394 (1109)
..+..... .....+++.+++.++....+...+..... .-..+....|++.++|- +.|+..+-.
T Consensus 157 ~~kl~~~L~-SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 157 LEKVPPTII-SRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred hHhhhHHHh-cCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33322221 12238999999999999998887744322 22345677888877654 566655543
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.21 E-value=2.2e-05 Score=84.04 Aligned_cols=176 Identities=19% Similarity=0.214 Sum_probs=96.3
Q ss_pred cccccc-cchhhH-HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 183 ILKELV-GIDSRL-EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 183 ~~~~~v-Gr~~~l-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
..++|+ |.+.+. ..+..+.. .....+.+.|+|.+|+|||+||+++++.....-....++. ... ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~----------~~~ 83 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AAS----------PLL 83 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHH----------hHH
Confidence 345555 554443 44444433 2234567899999999999999999987643322233443 111 000
Q ss_pred HHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCC-CCCc-EEEEEeCCchhhHhh-
Q 001277 261 QLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWF-GPGS-KIVITTRDKQLLVAH- 335 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~-~~gs-~IiiTTR~~~v~~~~- 335 (1109)
. + .. ....-+||+||++.. .+.+.+...+... ..+. .||+|++........
T Consensus 84 ~----~-------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 84 A----F-------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred H----H-------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC
Confidence 0 0 00 123347999999654 2233333322111 2344 466666643211100
Q ss_pred -----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhc
Q 001277 336 -----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFL 396 (1109)
Q Consensus 336 -----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 396 (1109)
.......++++++++++-.+++.+.+-... ..-.++..+.+++...|++..+..+...+
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 111123899999999987777765442222 22234677888888999998877665443
No 86
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=2.3e-05 Score=88.10 Aligned_cols=178 Identities=17% Similarity=0.219 Sum_probs=108.5
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc------cccceEEeeechhhhcccCChHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH------EFDGSTFLANVREKSEKEGSVVSL 258 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l 258 (1109)
.+++|.+..++.+...+..+ .-.+...++|+.|+||||+|+.++..+-. +.+...|.. . ...... +.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~-v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIG-VDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCC-HHH-
Confidence 46789888889998888643 23467789999999999999999986632 222222221 0 000011 112
Q ss_pred HHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCC--CHHHHHHHHhcCCCCCCCcEEEEEeCCchhh-Hhh
Q 001277 259 QKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVA--DVEQLQNLARKRDWFGPGSKIVITTRDKQLL-VAH 335 (1109)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~ 335 (1109)
.+++...+.. .-..+++=++|+|+++ +.+.++.|+..+....+++.+|++|.+.+.. ...
T Consensus 78 ir~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 1122222110 0012344466667664 4556888888777667889999888765422 111
Q ss_pred CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 336 EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
. .....+++.++++++..+.+.....+ ...+.++.++.+++|.|..+...
T Consensus 141 ~-SRc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 141 K-SRCQIYKLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred H-hhceeeeCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 11238999999999998888665411 11244678899999998755433
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.6e-05 Score=92.30 Aligned_cols=195 Identities=15% Similarity=0.129 Sum_probs=107.6
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccc---eEEee-echhhhc-ccCCh
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDG---STFLA-NVREKSE-KEGSV 255 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~-~~~~~~~-~~~~~ 255 (1109)
|....++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+...... .|-.+ .++.... .+..+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 445678999999999998888643 234567899999999999999999866421110 00000 0000000 00000
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHH-HcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc-hh
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSR-LRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QL 331 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v 331 (1109)
..+ .........+..+....+... ..+++-++|+|+++.. ...+.|+..+......+++|++|.+. .+
T Consensus 91 iei--------daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ki 162 (546)
T PRK14957 91 IEI--------DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKI 162 (546)
T ss_pred EEe--------ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhh
Confidence 000 000000000111111111111 2356669999999754 45677776665545667676555543 33
Q ss_pred hHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 332 LVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
.... ......+++++++.++..+.+.+.+-... .....+....|++.++|-+-
T Consensus 163 l~tI-~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 163 PVTI-LSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred hhhH-HHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 2221 11123899999999999888887654322 22234566788889988664
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=7.3e-05 Score=91.85 Aligned_cols=173 Identities=28% Similarity=0.344 Sum_probs=102.0
Q ss_pred cccccccccchhhHH---HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLE---KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
|...++|||.+..+. .+...+.. .....+.++|++|+||||||+.+++.....|. ++..+ ..+ +..
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~-i~d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAG-VKD 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhh-hHH
Confidence 445678999998875 45555543 34566789999999999999999987765542 11100 001 111
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHH--cCCCCceEeccCCC--HHHHHHHHhcCCCCCCCcEEEEE--eCCch-
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRL--RQKKVLLVIDDVAD--VEQLQNLARKRDWFGPGSKIVIT--TRDKQ- 330 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IiiT--TR~~~- 330 (1109)
+ +.. .....+.+ .+++.+|||||++. ..+.+.|+... ..|..++|+ |.+..
T Consensus 93 i-r~~------------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 93 L-RAE------------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYF 150 (725)
T ss_pred H-HHH------------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHh
Confidence 1 111 11111111 24677999999964 45566676543 345555553 44432
Q ss_pred -hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcC-----CCCCchHHHHHHHHHHHhCCCch
Q 001277 331 -LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKT-----RQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 331 -v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
+..... ....++.+++|+.++..+++.+.+-.. .....-..+..+.|++++.|..-
T Consensus 151 ~l~~aL~-SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 151 EVNKALV-SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhhhHhh-ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111111 112379999999999999998766310 11122234667888888888754
No 89
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.18 E-value=5.5e-06 Score=88.32 Aligned_cols=153 Identities=23% Similarity=0.363 Sum_probs=92.3
Q ss_pred CcccccccccchhhHHH---HHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChH
Q 001277 180 KPEILKELVGIDSRLEK---LRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVV 256 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 256 (1109)
.|...+++||.+..+.+ |.+++ +.+....+.+||++|.||||||+.++..-+.+- ..|+.- +.......
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvel----SAt~a~t~ 204 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVEL----SATNAKTN 204 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEE----eccccchH
Confidence 34455677777766543 33333 345677888999999999999999998655442 344431 11111011
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCC--HHHHHHHHhcCCCCCCCcEEEE--EeCCchhh
Q 001277 257 SLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVAD--VEQLQNLARKRDWFGPGSKIVI--TTRDKQLL 332 (1109)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~ 332 (1109)
+ .+.++.+-. -...+.++|.+|++|.|.. ..|.+.+++.. ..|..++| ||.++..-
T Consensus 205 d-vR~ife~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFq 264 (554)
T KOG2028|consen 205 D-VRDIFEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQ 264 (554)
T ss_pred H-HHHHHHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccc
Confidence 1 112221111 0123467899999999954 45566665543 57777776 77776432
Q ss_pred HhhC-CCccceEEcCCCCHHHHHHHHHHh
Q 001277 333 VAHE-VDEEHIYNLEVLSNDEALQLFSMK 360 (1109)
Q Consensus 333 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 360 (1109)
.... .....++.++.|+.++-..++.+-
T Consensus 265 ln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 265 LNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 1111 112238999999999999988874
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=3.1e-05 Score=88.57 Aligned_cols=187 Identities=14% Similarity=0.126 Sum_probs=105.8
Q ss_pred ccccccchhhHHHHHhhhcccCC--------CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCCh
Q 001277 184 LKELVGIDSRLEKLRFLIATESS--------DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 255 (1109)
..+++|.+.-++.|...+..+.. -.+.+.++|++|+|||++|+.+++.+-..... ...+ + .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~---~~~C-------g-~ 72 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD---EPGC-------G-E 72 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC---CCCC-------C-C
Confidence 35688999989999888875421 24668899999999999999998865332110 0000 0 0
Q ss_pred HHHHHHHHHHHhhccCc-------ccccccccHHHHHHHH-----cCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcE
Q 001277 256 VSLQKQLLSDLLKLADI-------SIWNVDDGINIIGSRL-----RQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSK 321 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~-------~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~ 321 (1109)
-.....+... ...+. ....+++ +..+.+.+ .+++-++|+|+++... ..+.|+..+....++..
T Consensus 73 C~~C~~~~~~--~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~ 149 (394)
T PRK07940 73 CRACRTVLAG--THPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTV 149 (394)
T ss_pred CHHHHHHhcC--CCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCe
Confidence 0000000000 00000 0000111 11111222 2344578889997653 35556665554456777
Q ss_pred EEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 322 IVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 322 IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
+|++|.+.. +...... ....+.+.+++.++..+.+..... ...+.+..++..++|.|.....+
T Consensus 150 fIL~a~~~~~llpTIrS-Rc~~i~f~~~~~~~i~~~L~~~~~-------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 150 WLLCAPSPEDVLPTIRS-RCRHVALRTPSVEAVAEVLVRRDG-------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEEEECChHHChHHHHh-hCeEEECCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 777776643 3322211 123899999999999998874321 11355778999999999755444
No 91
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.17 E-value=1.3e-05 Score=79.12 Aligned_cols=123 Identities=18% Similarity=0.183 Sum_probs=69.2
Q ss_pred ccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHh
Q 001277 188 VGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL 267 (1109)
Q Consensus 188 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 267 (1109)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+.+++.+...- ..+++.......... ...... ..
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~-~~v~~~~~~~~~~~~----~~~~~~--~~- 70 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPG-APFLYLNASDLLEGL----VVAELF--GH- 70 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCC-CCeEEEehhhhhhhh----HHHHHh--hh-
Confidence 47888888888887542 356889999999999999999999775332 233333222211100 000000 00
Q ss_pred hccCcccccccccHHHHHHHHcCCCCceEeccCCCH--H---HHHHHHhcCCCC---CCCcEEEEEeCCch
Q 001277 268 KLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--E---QLQNLARKRDWF---GPGSKIVITTRDKQ 330 (1109)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~---~~~~l~~~~~~~---~~gs~IiiTTR~~~ 330 (1109)
. ............++.+||+||++.. . .+..+....... ..+.+||+||....
T Consensus 71 -------~---~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 -------F---LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------h---hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0 0001111222456789999999864 2 233333332221 36788888888654
No 92
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.16 E-value=9.4e-06 Score=78.56 Aligned_cols=114 Identities=23% Similarity=0.252 Sum_probs=72.2
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccc----cceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEF----DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINI 283 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 283 (1109)
.+.+.|+|.+|+|||++++.+++....++ ...+++..+.... ....+...++..+...... ..+..+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR----TPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS----SHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC----CHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 46899999999999999999998775431 2233333332221 3677788888887743322 1345566677
Q ss_pred HHHHHcCCCC-ceEeccCCCH---HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 284 IGSRLRQKKV-LLVIDDVADV---EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 284 l~~~L~~k~~-LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
+.+.+...+. +||||+++.. +.++.+....+ ..+.+||+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7777776555 9999999766 34556655444 677788887765
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6.2e-08 Score=100.25 Aligned_cols=157 Identities=24% Similarity=0.285 Sum_probs=86.4
Q ss_pred CcceeeccccCCc--cccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEec
Q 001277 575 DLSELFLDRTTIE--ELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFL 652 (1109)
Q Consensus 575 ~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 652 (1109)
.|++|+|+.+.++ .+..-+..+.+|+.|.|.++..-..+-..+.+-.+|+.|+|++|+.+.....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~------------- 252 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL------------- 252 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH-------------
Confidence 3667777766665 4444556777777777777655444555566667788888887754443211
Q ss_pred cCccCcccCCcccCCCCCcEEeeeccCCCcccCCC-CCC-CCCCcEEEecCCCCCc---ccCcccCCCCCccEEecCCCc
Q 001277 653 DGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSC-ING-LRSLKTLNLSGCSKLQ---NVPETLGQVESLEELDISGTA 727 (1109)
Q Consensus 653 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~-l~~L~~L~Ls~c~~l~---~lp~~l~~l~~L~~L~L~~~~ 727 (1109)
---+.+++.|+.|+|+.|......-.. +.+ -++|..|+|+||...- .+.--...+++|.+|||++|.
T Consensus 253 --------~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 253 --------QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred --------HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 011334455555555555433221110 011 1355566666654211 111112356677777777654
Q ss_pred ccCC--CccccccCCCcEEEccCCCCC
Q 001277 728 IRRP--PSSIFVMNNLKTLSFSGCNGP 752 (1109)
Q Consensus 728 i~~~--p~~l~~l~~L~~L~L~~c~~~ 752 (1109)
.-.- -..+.+++.|++|.++.|...
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCC
Confidence 3221 335667888889988888654
No 94
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=1.8e-05 Score=89.28 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=113.7
Q ss_pred CcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc----ccceEEeeechhhhcccCCh
Q 001277 180 KPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE----FDGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 255 (1109)
.|.....++|-+...+.+...+..+ .-...+.|+|+.|+||||+|..+++.+-.. +...... ...+ .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~-~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDP-A 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCC-C
Confidence 4556788999999999999888644 234578899999999999999999876442 1111000 0000 0
Q ss_pred HHHHHHHHHH-------HhhccCc------ccccccccHHHHHHHHc-----CCCCceEeccCCCHH--HHHHHHhcCCC
Q 001277 256 VSLQKQLLSD-------LLKLADI------SIWNVDDGINIIGSRLR-----QKKVLLVIDDVADVE--QLQNLARKRDW 315 (1109)
Q Consensus 256 ~~l~~~ll~~-------l~~~~~~------~~~~~~~~~~~l~~~L~-----~k~~LlVLDdv~~~~--~~~~l~~~~~~ 315 (1109)
-...+.+... +....+. ....+++ +..+.+.+. +++-++|+|+++... ..+.|+..+..
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 0111111111 0000000 0001111 223333332 456689999997653 45666655544
Q ss_pred CCCCcEEEEEeC-CchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 001277 316 FGPGSKIVITTR-DKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLG 393 (1109)
Q Consensus 316 ~~~gs~IiiTTR-~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 393 (1109)
......+|++|. ...+...... ....+++.+++.++..+++........ -..+....+++.++|.|.....+.
T Consensus 168 pp~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345555555554 3333332221 123899999999999999987432111 123557789999999998655443
No 95
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=4.7e-05 Score=89.60 Aligned_cols=189 Identities=17% Similarity=0.163 Sum_probs=109.9
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc--c-----eEEeeechhhhcccC
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD--G-----STFLANVREKSEKEG 253 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~-----~~~~~~~~~~~~~~~ 253 (1109)
|....++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. . .|..+
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C---------- 85 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC---------- 85 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----------
Confidence 445678899999999888876533 23457889999999999999999986632210 0 00100
Q ss_pred ChHHHHHHHHHHHhhccCccc--ccccccHHHHHHH--------HcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcE
Q 001277 254 SVVSLQKQLLSDLLKLADISI--WNVDDGINIIGSR--------LRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSK 321 (1109)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~--~~~~~~~~~l~~~--------L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~ 321 (1109)
.....+.... ..+... ......+..+++. +.+++-++|+|+++.. ..++.|+..+....+.+.
T Consensus 86 ---~~C~~i~~~~--h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~v 160 (507)
T PRK06645 86 ---TNCISFNNHN--HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHII 160 (507)
T ss_pred ---hHHHHHhcCC--CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEE
Confidence 0000000000 000000 0000111122211 2345668999999874 457777766654456666
Q ss_pred EEEEe-CCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 322 IVITT-RDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 322 IiiTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
+|++| +...+...... ....+++.+++.+|..+.+.+.+-..... ...+....|++.++|.+--
T Consensus 161 fI~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 161 FIFATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARD 225 (507)
T ss_pred EEEEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 66544 44444332211 11379999999999999999888543322 2335677899999997753
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=6.1e-05 Score=86.79 Aligned_cols=185 Identities=13% Similarity=0.140 Sum_probs=111.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc----ccc-----------------e
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE----FDG-----------------S 239 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~-----------------~ 239 (1109)
|.....+||.+..++.+...+..+ .-.+.+.++|++|+||||+|+.++..+... +.. .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 445678899999999999888643 234577899999999999999999876422 110 0
Q ss_pred EEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCCC
Q 001277 240 TFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFG 317 (1109)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~ 317 (1109)
..+.. ...... ...+++...+.. .-..+++-++|+|+++.. ...+.++..+....
T Consensus 89 ~~~~~-----~~~~~~-~~~~~l~~~~~~-----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 89 IEIDA-----ASNNGV-DDIREILDNVKY-----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP 145 (355)
T ss_pred EEeec-----cccCCH-HHHHHHHHHHhc-----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc
Confidence 00100 000000 001111111100 001234558899998765 44666666665445
Q ss_pred CCcEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 318 PGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 318 ~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
+.+.+|++|.+.. +...... ....+++.++++++..+++...+-..... -..+.+..+++.++|.|..+...
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~s-r~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATILS-RCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred cceeEEEEeCCHHHHHHHHHh-heeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHH
Confidence 6677777775543 2222111 11278999999999999998877443322 22467788899999998765444
No 97
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=4.9e-05 Score=86.11 Aligned_cols=256 Identities=15% Similarity=0.158 Sum_probs=147.1
Q ss_pred cccccccccchhhHHHHHhhhcc--cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccce-EEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIAT--ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGS-TFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~ 257 (1109)
...++.+.+||.+++++...|.. .+..+.-+.|+|.+|.|||+.++.+++++....... +...++... ....+
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~----~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL----RTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC----CCHHH
Confidence 34456699999999999888762 222334489999999999999999999888775544 444444333 23556
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHHc--CCCCceEeccCCCHH-----HHHHHHhcCCCCCCCcEE--EEEeCC
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRLR--QKKVLLVIDDVADVE-----QLQNLARKRDWFGPGSKI--VITTRD 328 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~I--iiTTR~ 328 (1109)
+...++..+....... ....+....+.+.+. ++.+++|||+++... .+-.|....... .++| |..+-+
T Consensus 89 i~~~i~~~~~~~p~~g-~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 89 VLSKILNKLGKVPLTG-DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHcCCCCCCC-CchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc
Confidence 7777777765222221 344555666666665 478999999997653 233444433322 3443 334443
Q ss_pred chhhHhhC-----CCccceEEcCCCCHHHHHHHHHHhhh---cCCCCCchHHHHHHHHHHHhCC-CchhHHHHhh--hcC
Q 001277 329 KQLLVAHE-----VDEEHIYNLEVLSNDEALQLFSMKAF---KTRQPMGEYVELSKRVLKYAGG-LPLALTVLGS--FLN 397 (1109)
Q Consensus 329 ~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~G-lPLal~~l~~--~L~ 397 (1109)
........ .-....+..++-+.+|-.+.+..++- ......++.-+++..++..-+| -=.||..+-. .++
T Consensus 166 ~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 33222111 11122478999999999999998873 3333344455566666666665 2233333321 121
Q ss_pred C------CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcccCCCCH
Q 001277 398 G------RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACFFKSWDR 450 (1109)
Q Consensus 398 ~------~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~~ 450 (1109)
. .+.+.-..+.+... ...+.-....|+.+.|..+..++..-.....
T Consensus 246 e~~~~~~v~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~ 297 (366)
T COG1474 246 EREGSRKVSEDHVREAQEEIE-------RDVLEEVLKTLPLHQKIVLLAIVELTVEIST 297 (366)
T ss_pred HhhCCCCcCHHHHHHHHHHhh-------HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCh
Confidence 1 12222222211111 2233444778888888776666554333333
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.4e-05 Score=93.98 Aligned_cols=196 Identities=18% Similarity=0.145 Sum_probs=111.3
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+-..... . ....+ .-...+
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~~pCg-~C~~C~ 80 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----ATPCG-ECDNCR 80 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----CCCCC-CCHHHH
Confidence 4556789999999999988886432 23557899999999999999999865432100 0 00000 000000
Q ss_pred HHHH----HHh--hcc-CcccccccccHHHHHH-HHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch
Q 001277 261 QLLS----DLL--KLA-DISIWNVDDGINIIGS-RLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ 330 (1109)
Q Consensus 261 ~ll~----~l~--~~~-~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~ 330 (1109)
.+.. ++. ... .....+..+++..+.. -..+++-++|||+++.. ...+.|+..+.......++|++|.+..
T Consensus 81 ~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 1100 000 000 0000011111111111 12356668999999765 457777766554456677776666543
Q ss_pred -hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 331 -LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 331 -v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
+...... ....|.+++++.++..+.+.+.+-.... ....+....|++.++|.+--+.
T Consensus 161 kLl~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 161 KLPVTILS-RCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred ccchHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 3222111 1238999999999999999877633221 2234567889999999886443
No 99
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=0.00011 Score=86.00 Aligned_cols=166 Identities=15% Similarity=0.158 Sum_probs=98.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcccc-ce-EEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFD-GS-TFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIG 285 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1109)
...+.|+|..|.|||+|++++++.+....+ .. +++. ...+...+...+... ......++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~--------~~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKT--------HKEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHh--------hhHHHHHH
Confidence 356889999999999999999997765332 22 3332 223333333333210 01223344
Q ss_pred HHHcCCCCceEeccCCCHH----HHHHHHhcCCC-CCCCcEEEEEeCCch-hhHhh------CCCccceEEcCCCCHHHH
Q 001277 286 SRLRQKKVLLVIDDVADVE----QLQNLARKRDW-FGPGSKIVITTRDKQ-LLVAH------EVDEEHIYNLEVLSNDEA 353 (1109)
Q Consensus 286 ~~L~~k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~-v~~~~------~~~~~~~~~l~~L~~~ea 353 (1109)
+.++ +.-+|||||+.... ..+.+...++. ...|..||+|+.... ..... +...+.++++++++.++.
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 4444 34588999995432 23334332221 134557888876431 11110 111223789999999999
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 001277 354 LQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLG 393 (1109)
Q Consensus 354 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 393 (1109)
.+++.+++-.......-.++...-|++.++|.|-.+..+.
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9999998854321112345788899999999998775554
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=98.11 E-value=7.5e-05 Score=79.90 Aligned_cols=149 Identities=16% Similarity=0.262 Sum_probs=86.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
...+.|+|..|+|||.||+++++.+..+-..++|+. ...+... ...+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-----------~~~~~~~-------------------~~~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-----------LAELLDR-------------------GPELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-----------HHHHHhh-------------------hHHHHHh
Confidence 367899999999999999999987765433445553 1111110 0112222
Q ss_pred HcCCCCceEeccCCCH---HHH-HHHHhcCCC-CCCCcEEEEEeCCch--h-------hHhhCCCccceEEcCCCCHHHH
Q 001277 288 LRQKKVLLVIDDVADV---EQL-QNLARKRDW-FGPGSKIVITTRDKQ--L-------LVAHEVDEEHIYNLEVLSNDEA 353 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~~--v-------~~~~~~~~~~~~~l~~L~~~ea 353 (1109)
+.+-. +||+||+... .++ +.+...++. ...|.+||+|++... + ....... .++++++++.++-
T Consensus 95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~ 171 (234)
T PRK05642 95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDK 171 (234)
T ss_pred hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHH
Confidence 33222 6889999633 233 223333321 235778999887532 1 1111112 3789999999999
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 001277 354 LQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 391 (1109)
Q Consensus 354 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 391 (1109)
.+++..++.... ..-.++...-+++.+.|-.-++..
T Consensus 172 ~~il~~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 172 LRALQLRASRRG--LHLTDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 999987764432 112246666677776666544443
No 101
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=7.1e-07 Score=92.60 Aligned_cols=209 Identities=21% Similarity=0.201 Sum_probs=123.8
Q ss_pred CCCCCcEEeccCccCc---ccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCC-cccCcccCCCCCc
Q 001277 643 SMKDLMELFLDGTSIA---EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKL-QNVPETLGQVESL 718 (1109)
Q Consensus 643 ~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L 718 (1109)
..+.+++|+|.+|.|+ ++..-+.+++.|+.|+|+.|.....+...-..+.+|++|.|.|.... ......+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4556667777777665 33444566777777777765432211111024567777777765421 1222345556667
Q ss_pred cEEecCCCcccCCC---ccccc-cCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCC
Q 001277 719 EELDISGTAIRRPP---SSIFV-MNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSD 794 (1109)
Q Consensus 719 ~~L~L~~~~i~~~p---~~l~~-l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~ 794 (1109)
++|+++.|+++.+. ..+.. -+.+++|.+.+|....- ... -..-.-|+++..+-+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w--------------~~~------~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW--------------LNK------NKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHH--------------HHH------HhHHhhcccchheeeec
Confidence 77777776554431 11111 12455555555431100 000 00123467888888888
Q ss_pred CCCCCCCcccccCCCCCCCEEeCCCCCCcccc--hhhhccCCCCceeccCCcCcCcCCCCCCCcceEeccCCcccccccc
Q 001277 795 CGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP--ASINSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQVNGCASLVTLSG 872 (1109)
Q Consensus 795 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~~~~C~~L~~l~~ 872 (1109)
|.+.+..--.....++.+-.|+|+.|++-++. ..+..++.|..|.+.++|.+..+.. .-=+.|-|...++++.+.+
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKVQVLNG 286 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccceEEecC
Confidence 88765545556667888899999999998776 3578899999999999998887764 2223556666676666654
Q ss_pred c
Q 001277 873 A 873 (1109)
Q Consensus 873 ~ 873 (1109)
+
T Consensus 287 s 287 (418)
T KOG2982|consen 287 S 287 (418)
T ss_pred c
Confidence 3
No 102
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.11 E-value=1.3e-07 Score=102.76 Aligned_cols=276 Identities=25% Similarity=0.313 Sum_probs=153.6
Q ss_pred cceEEEecCCCCCCccc-ccccCCcCCcceeecc-ccCCcc--ccccccccCCCcEEeCCCCcCCcccc--ccccccCcC
Q 001277 550 SLKTLVLSGCLKLTKKC-LEFAGSMNDLSELFLD-RTTIEE--LPLSIQHLTGLVLLNLKDCKNLKSLS--HTLRRLQCL 623 (1109)
Q Consensus 550 ~L~~L~l~~~~~l~~~~-~~~~~~~~~L~~L~L~-~~~l~~--l~~~~~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L 623 (1109)
.||.|.+.||.....-. -.+...+++++.|.+. +..++. +-..-..+++|++|++..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 47788888886544321 1234566677777666 333431 22223567888888888887766432 112357788
Q ss_pred cEEEecCCCCCCc--ccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcc--cCCCCCCCCCCcEEEe
Q 001277 624 KNLTLSGCSKLKK--FPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVR--LPSCINGLRSLKTLNL 699 (1109)
Q Consensus 624 ~~L~L~~~~~~~~--~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~L 699 (1109)
++|++++|..... +-.....++ +|+.+.+++|..++. +-..-+.+.-+.++++
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~-----------------------~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCK-----------------------ELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred HHhhhccCchhhcCcchHHhccch-----------------------hhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 8888888854432 111222233 333443444432210 0000012223334444
Q ss_pred cCCCCCcccC--cccCCCCCccEEecCCCcc-cCCC--ccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCc
Q 001277 700 SGCSKLQNVP--ETLGQVESLEELDISGTAI-RRPP--SSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPV 774 (1109)
Q Consensus 700 s~c~~l~~lp--~~l~~l~~L~~L~L~~~~i-~~~p--~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1109)
..|..++... ..-..+..|+.|+.+++.. ...+ .-..+..+|+.|.+.+|...+...
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~------------------ 337 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG------------------ 337 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh------------------
Confidence 4444333221 1112234455665555432 1111 112356889999999998644322
Q ss_pred cccCCCCCCCCCCCEEecCCCCCCCCC-cccccCCCCCCCEEeCCCCCCc-c-----cchhhhccCCCCceeccCCcCcC
Q 001277 775 ALMLPSLSGLHSLSKLDLSDCGLGEGA-IPNDIGNLCSLKQLNLSQNNFV-T-----LPASINSLFNLGQLDLEDCKRLQ 847 (1109)
Q Consensus 775 ~~l~~~l~~l~~L~~L~Ls~~~l~~~~-lp~~l~~l~~L~~L~Ls~n~l~-~-----lp~~~~~l~~L~~L~L~~c~~L~ 847 (1109)
+...-.+++.|+.|++..|.+.... +...-.+++.|+.|.|++|.+. . +..+-..+..|+.|.|++|+.+.
T Consensus 338 --ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 338 --FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred --hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 1112356789999999999765433 4444467899999999998443 2 23444667889999999999876
Q ss_pred cCC----CCCCCcceEeccCCcccc
Q 001277 848 SMP----QLPSNLYEVQVNGCASLV 868 (1109)
Q Consensus 848 ~lp----~lp~~L~~L~~~~C~~L~ 868 (1109)
.-- ...++|+.+++.+|....
T Consensus 416 d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 416 DATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred HHHHHHHhhCcccceeeeechhhhh
Confidence 421 233567777777776543
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.11 E-value=4.9e-05 Score=81.46 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=93.5
Q ss_pred cccc-cchh-hHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHH
Q 001277 185 KELV-GIDS-RLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQL 262 (1109)
Q Consensus 185 ~~~v-Gr~~-~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1109)
++|+ |... .+..+..+.. ....+.+.|+|++|+|||+||+++++.....-..+.|+. +... .....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~-------~~~~~-- 89 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR-------AWFVP-- 89 (235)
T ss_pred cccccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH-------hhhhH--
Confidence 3444 6332 2334444432 223467899999999999999999987765433334443 1110 00000
Q ss_pred HHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH---HHHH-HHHhcCCC-CCCC-cEEEEEeCCch------
Q 001277 263 LSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV---EQLQ-NLARKRDW-FGPG-SKIVITTRDKQ------ 330 (1109)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~-~l~~~~~~-~~~g-s~IiiTTR~~~------ 330 (1109)
.+.+.+.. --+|+|||++.. .+|+ .+...+.. ...| .++|+||+...
T Consensus 90 --------------------~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~ 148 (235)
T PRK08084 90 --------------------EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLG 148 (235)
T ss_pred --------------------HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcc
Confidence 01111111 237899999653 2232 22222211 1233 47999998542
Q ss_pred ---hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 001277 331 ---LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 391 (1109)
Q Consensus 331 ---v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 391 (1109)
+...+... .+++++++++++-.+++.+++.... ..-.++...-|++.+.|..-++..
T Consensus 149 ~~~L~SRl~~g--~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 149 LPDLASRLDWG--QIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred cHHHHHHHhCC--ceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 22222222 3899999999999999988664322 222346667777777766554443
No 104
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.10 E-value=2.5e-05 Score=90.10 Aligned_cols=173 Identities=16% Similarity=0.210 Sum_probs=96.8
Q ss_pred cccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 183 ILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
...++.|++..++++.+.+.. +-...+-|.++|++|+|||++|++++++....|- .+. ...
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~~---- 200 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GSE---- 200 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hHH----
Confidence 446789999999999877642 1133567899999999999999999997754321 111 100
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHH-HcCCCCceEeccCCCHH-------------H---HHHHHhcCC
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR-LRQKKVLLVIDDVADVE-------------Q---LQNLARKRD 314 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~-------------~---~~~l~~~~~ 314 (1109)
+. .... .........+.+. -...+.+|+|||++... . +..++....
T Consensus 201 ------l~----~~~~-------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 201 ------LV----QKFI-------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred ------Hh----Hhhc-------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 10 0000 0000111111111 13467899999997641 1 222332222
Q ss_pred CC--CCCcEEEEEeCCchhhHhh-----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC
Q 001277 315 WF--GPGSKIVITTRDKQLLVAH-----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL 385 (1109)
Q Consensus 315 ~~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 385 (1109)
.. ..+.+||.||......... ..+. .++++..+.++..++|..++.+...... .....+++.+.|.
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~--~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDR--IIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCce--EEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 21 2356677777654322211 2233 7999999999999999987744322211 1134455555554
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=4.3e-05 Score=91.66 Aligned_cols=195 Identities=17% Similarity=0.214 Sum_probs=110.0
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc-c--ceEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF-D--GSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~--~~~~~~~~~~~~~~~~~~~~ 257 (1109)
|....++||-+.-++.|..++..+ .-...+.++|..|+||||+|+.+++.+-..- + ...- ....+ .-.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~-------~~pCg-~C~ 82 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT-------ATPCG-VCQ 82 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC-------CCCCC-ccH
Confidence 345678999998888898888643 2346678999999999999999988653210 0 0000 00000 000
Q ss_pred HHHHHHHHHhhccCccc--ccccccHHHHHHHH--------cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEE
Q 001277 258 LQKQLLSDLLKLADISI--WNVDDGINIIGSRL--------RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVIT 325 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~--~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiT 325 (1109)
....+.. +...+... ......++.+++.+ .++.-++|||+|+.. ...+.|+..+.......++|++
T Consensus 83 ~C~~i~~--g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 83 ACRDIDS--GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred HHHHHHc--CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 0011100 00000000 00011222222222 234458999999765 4477777766554566677766
Q ss_pred eCCc-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 326 TRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 326 TR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
|.+. .+.... ......++++.++.++..+.+.+.+-..... ...+..+.|++.++|-+--+
T Consensus 161 Ttd~~kil~TI-lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 161 TTDPQKVPVTV-LSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred ECCchhhhHHH-HHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 6543 332221 1112389999999999999998876443322 22356788889999877544
No 106
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.09 E-value=0.0001 Score=77.84 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=87.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcccc-ceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFD-GSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIG 285 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1109)
....+.|+|..|.|||.|.+++++.+....+ ..+.+.. .......+...+.. .....++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~----------~~~~~~~ 92 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD----------GEIEEFK 92 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT----------TSHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc----------ccchhhh
Confidence 3456889999999999999999998876544 3343332 22333333333221 1234455
Q ss_pred HHHcCCCCceEeccCCCHH---HH-HHHHhcCCC-CCCCcEEEEEeCCch---------hhHhhCCCccceEEcCCCCHH
Q 001277 286 SRLRQKKVLLVIDDVADVE---QL-QNLARKRDW-FGPGSKIVITTRDKQ---------LLVAHEVDEEHIYNLEVLSND 351 (1109)
Q Consensus 286 ~~L~~k~~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~~~l~~L~~~ 351 (1109)
+.+++ -=+|+|||++... .+ +.+...++. ...|.+||+|++... +....... .++++++++.+
T Consensus 93 ~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G--l~~~l~~pd~~ 169 (219)
T PF00308_consen 93 DRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG--LVVELQPPDDE 169 (219)
T ss_dssp HHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS--EEEEE----HH
T ss_pred hhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc--chhhcCCCCHH
Confidence 55553 4478899996542 12 222222211 135779999996431 11222222 38999999999
Q ss_pred HHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 352 EALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 352 ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
+..+++.+++-...-. -.+++++-+++.+.+..-.|
T Consensus 170 ~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 170 DRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHH
Confidence 9999999988543322 23355566666655444333
No 107
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.7e-05 Score=87.53 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=109.6
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-...... ....+ .-....
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~---------~~pCg-~C~~C~ 77 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPT---------SDPCG-TCHNCI 77 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCC---------CCCcc-ccHHHH
Confidence 4456789999999998888776432 235788999999999999999988553211100 00000 000000
Q ss_pred HHHHHHhhccCccccc--ccccHHHHHHHH--------cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 261 QLLSDLLKLADISIWN--VDDGINIIGSRL--------RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~~~--~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
.+..... .+....+ ....++.+++.+ .++.-++|+|+++.. +..+.|+..+....+.+++|++|.+
T Consensus 78 ~i~~~~~--~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 78 SIKNSNH--PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred HHhccCC--CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 0000000 0000000 001111222111 245558999999654 4467777666655677777776644
Q ss_pred -chhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 329 -KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 329 -~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
+.+..... .....+++++++.++..+.+.+.+..... .-..+....|++.++|.+-.
T Consensus 156 ~~Kl~~tI~-SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 156 VKKIPVTII-SRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred hHHHHHHHH-HhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 33322211 11237999999999999999887754332 22346677899999987753
No 108
>PRK09087 hypothetical protein; Validated
Probab=98.08 E-value=5.9e-05 Score=79.97 Aligned_cols=140 Identities=11% Similarity=0.039 Sum_probs=83.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
.+.+.|+|.+|+|||+|+++++.... ..++. .......... .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-----------~~~~~~~~~~----------------------~ 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-----------PNEIGSDAAN----------------------A 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-----------HHHcchHHHH----------------------h
Confidence 46789999999999999998887532 22443 1111111111 1
Q ss_pred HcCCCCceEeccCCCHH-HHHHHHhcCCC-CCCCcEEEEEeCCc---------hhhHhhCCCccceEEcCCCCHHHHHHH
Q 001277 288 LRQKKVLLVIDDVADVE-QLQNLARKRDW-FGPGSKIVITTRDK---------QLLVAHEVDEEHIYNLEVLSNDEALQL 356 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~~-~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~L 356 (1109)
+.+ -+|++||++... .-+.+...++. ...|..||+|++.. .+........ ++++++++.++-.++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl--~~~l~~pd~e~~~~i 161 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT--VVEIGEPDDALLSQV 161 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCc--eeecCCCCHHHHHHH
Confidence 111 278899995431 11222222211 13577899998742 2222222333 899999999999999
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 001277 357 FSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 391 (1109)
Q Consensus 357 f~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 391 (1109)
+.+++-... ..-.+++..-|++.+.|..-++..
T Consensus 162 L~~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 162 IFKLFADRQ--LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 998874422 222346677777777777666553
No 109
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=7.4e-05 Score=88.65 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=108.0
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||-+.-++.|..++..+ .-.....++|+.|+||||+|+.+++.+-..-... ....+ .-....
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg-~C~~C~ 80 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS---------ANPCN-DCENCR 80 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------cccCC-CCHHHH
Confidence 445678999999999999998643 2245678999999999999999998663210000 00000 000000
Q ss_pred HHHH----HHhhccCcccccccccHHHHHHHH--------cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEe
Q 001277 261 QLLS----DLLKLADISIWNVDDGINIIGSRL--------RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITT 326 (1109)
Q Consensus 261 ~ll~----~l~~~~~~~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT 326 (1109)
.+.. ++..- + ......++.+++.+ .++.-++|||+|+.. +..+.|+..+....+.+++|++|
T Consensus 81 ~i~~g~~~d~~ei-d---aas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 81 EIDEGRFPDLFEV-D---AASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred HHhcCCCceEEEE-c---ccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 0000 00000 0 00001111222211 244558899999764 45666766665555678787776
Q ss_pred CCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 327 RDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 327 R~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
.+.. +.... ......+++++++.++..+.+.+.+-..... -..+....|++.++|-+.-+
T Consensus 157 td~~kl~~tI-~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 157 TDHHKLPVTV-LSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDA 217 (509)
T ss_pred CChHhchHHH-HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 5542 22111 1111268999999999888877666433322 22355678889999987543
No 110
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=6.6e-07 Score=104.92 Aligned_cols=105 Identities=29% Similarity=0.320 Sum_probs=56.2
Q ss_pred cCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcE
Q 001277 570 AGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLME 649 (1109)
Q Consensus 570 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 649 (1109)
+..+.+|..|++.++.++.+...+..+++|++|++++|. ++.+.. +..++.|+.|++++|..... ..+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 445556666666666666665445666666666666653 333333 45555566666666532211 12233555555
Q ss_pred EeccCccCcccCCc-ccCCCCCcEEeeecc
Q 001277 650 LFLDGTSIAEVPSS-IELLTGLQLLNLNNC 678 (1109)
Q Consensus 650 L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c 678 (1109)
+++++|.+..+... +..+.+|+.+.+.+|
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 66666555555432 344555555555544
No 111
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=6.4e-07 Score=105.01 Aligned_cols=54 Identities=33% Similarity=0.422 Sum_probs=26.3
Q ss_pred CCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCC
Q 001277 787 LSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDC 843 (1109)
Q Consensus 787 L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c 843 (1109)
|+.+++++|++.. ++..+..+..+..|++.+|.+..+. .+...+.+..+....+
T Consensus 234 L~~l~l~~n~i~~--~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 234 LRELYLSGNRISR--SPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDN 287 (414)
T ss_pred HHHHhcccCcccc--ccccccccccccccchhhccccccc-cccccchHHHhccCcc
Confidence 5566666666532 2234455556666666666554333 2233334444444433
No 112
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=5.6e-05 Score=87.71 Aligned_cols=200 Identities=15% Similarity=0.165 Sum_probs=109.4
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc--ccceEEeeechhhhcccCChHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE--FDGSTFLANVREKSEKEGSVVSL 258 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 258 (1109)
|....+++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+... ++...|........... ..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c----~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC----ES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC----HH
Confidence 445678999999888898888643 223458899999999999999999876431 10000110000000000 00
Q ss_pred HHHHHHHHh----hccCcccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeC
Q 001277 259 QKQLLSDLL----KLADISIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTR 327 (1109)
Q Consensus 259 ~~~ll~~l~----~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 327 (1109)
.+.+..... .-........++ +..+.+.+ .+++-++|+|+++.. +.++.++..+....+.+.+|++|.
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 001100000 000000000111 11122222 234558899999754 456677666554456777766654
Q ss_pred -CchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 328 -DKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 328 -~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
...+..... .....+++.++++++..+.+...+-... ..-..+.+..+++.++|.+--+
T Consensus 166 ~~~kl~~tl~-sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 166 ELHKIPATIA-SRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred ChHHhHHHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 333332211 0112689999999999988887763322 1223467889999999987533
No 113
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.01 E-value=0.00011 Score=76.09 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=61.9
Q ss_pred CCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCC
Q 001277 290 QKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 366 (1109)
Q Consensus 290 ~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 366 (1109)
+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+..... .....+++.+++.++..+.+.++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~-sr~~~~~~~~~~~~~~~~~l~~~g----- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR-SRCQVLPFPPLSEEALLQWLIRQG----- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH-hhcEEeeCCCCCHHHHHHHHHHcC-----
Confidence 45568999999765 34666776666556677888877654 2222211 112389999999999999988761
Q ss_pred CCchHHHHHHHHHHHhCCCchh
Q 001277 367 PMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 367 ~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
-..+.+..+++.++|.|..
T Consensus 169 ---i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 ---ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred ---CCHHHHHHHHHHcCCCccc
Confidence 1136688999999998853
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.00 E-value=0.00012 Score=76.33 Aligned_cols=265 Identities=18% Similarity=0.229 Sum_probs=139.0
Q ss_pred cccccccccchhhHHHHHhhhcc---cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIAT---ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
|....+|||.++-.++|.-.+.. .....--|.++|++|.||||||..+++.+...+.. . ....-++++++..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----t-sGp~leK~gDlaa 96 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----T-SGPALEKPGDLAA 96 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----c-ccccccChhhHHH
Confidence 55668899999999888777653 23345578999999999999999999988654321 0 1111112221111
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHHH-HHHHH-hcCCC--------CCCCcEE-----
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQ-LQNLA-RKRDW--------FGPGSKI----- 322 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-~~~l~-~~~~~--------~~~gs~I----- 322 (1109)
++. -|.. .=++++|.+..... .++++ +.... .++++|.
T Consensus 97 ----iLt----------------------~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 97 ----ILT----------------------NLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ----HHh----------------------cCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 111 1111 22456677654321 22221 11111 1344443
Q ss_pred ------EEEeCCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhc
Q 001277 323 ------VITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFL 396 (1109)
Q Consensus 323 ------iiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 396 (1109)
=-|||.-.+.....-.-..+.+++--+.+|-.+...+.+..-. .+-.++.+.+|+++..|-|--..-+-...
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 3588865443222211122788999999999999988873222 22334678899999999995433332222
Q ss_pred CCCCHHHHHHHHHH--hhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcccCCCC--HHHHHHHHHhCCCCcccc-hHHh
Q 001277 397 NGRSVDLWRSTLKR--LKKEPPNRIINILQISFDGLQDLEKKIFLDVACFFKSWD--RDHVEKILEGCGFSPVIG-IEVL 471 (1109)
Q Consensus 397 ~~~~~~~w~~~l~~--l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~~~~~-l~~L 471 (1109)
+ ++..+-.. +...........|.+-=.+|+...++.+..+.-.+.|-+ .+.+...+......-+.. --.|
T Consensus 228 R-----Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyL 302 (332)
T COG2255 228 R-----DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYL 302 (332)
T ss_pred H-----HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHH
Confidence 1 11111000 000000112333444445777777777766665554333 344443332211100111 1247
Q ss_pred hhccCeeEeCCCe
Q 001277 472 IEKSLLTVDDGNR 484 (1109)
Q Consensus 472 ~~~sLi~~~~~~~ 484 (1109)
+..++++....++
T Consensus 303 iq~gfi~RTpRGR 315 (332)
T COG2255 303 IQQGFIQRTPRGR 315 (332)
T ss_pred HHhchhhhCCCcc
Confidence 7777777665444
No 115
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=6.7e-05 Score=88.85 Aligned_cols=191 Identities=17% Similarity=0.153 Sum_probs=105.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. . ...... ...+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~-~~Cg~C----~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-G-DCCNSC----SVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-C-CCCccc----HHHH
Confidence 455678999999999998888643 2346788999999999999999998764211 000 0 000000 0000
Q ss_pred HHHHHHhhccCccccc--ccccHHHHHHH---H-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 261 QLLSDLLKLADISIWN--VDDGINIIGSR---L-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~~~--~~~~~~~l~~~---L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
.+..... .+....+ ....++.+++. + .+++=++|+|+++.. ...+.|+..+....+...+|++|..
T Consensus 81 ~i~~~~h--~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~ 158 (605)
T PRK05896 81 SINTNQS--VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158 (605)
T ss_pred HHHcCCC--CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 0000000 0000000 00111112111 1 123336999999764 4466666655433456666665543
Q ss_pred c-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 329 K-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 329 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
. .+..... .....+++.+++.++....+...+-.... .-..+.+..+++.++|.+-
T Consensus 159 ~~KLl~TI~-SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 159 FQKIPLTII-SRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLR 215 (605)
T ss_pred hHhhhHHHH-hhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHH
Confidence 3 3322211 11127999999999999988877643321 1223557788899988664
No 116
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.0001 Score=88.82 Aligned_cols=198 Identities=16% Similarity=0.167 Sum_probs=107.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc--ccceEEeeechhhhcccCChHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE--FDGSTFLANVREKSEKEGSVVSL 258 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 258 (1109)
|....++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+...|.....+ ..+ .-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg-~C~s 86 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCG-ECES 86 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCc-cCHH
Confidence 445678999999999998887633 223558899999999999999999866331 110111110000 000 0000
Q ss_pred HHHHHHHHh---hccCc-ccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeC
Q 001277 259 QKQLLSDLL---KLADI-SIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTR 327 (1109)
Q Consensus 259 ~~~ll~~l~---~~~~~-~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 327 (1109)
.+.+...-. ...+. .....++.. .+.+.+ .+++-++|+|+++.. ...+.|+..+....+.+.+|++|.
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 001100000 00000 000111111 112222 234457899999765 346667666554445666665554
Q ss_pred C-chhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 328 D-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 328 ~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
+ ..+..... .....+++.+++.++....+.+.+-.... .-..+.++.+++.++|..-
T Consensus 166 ~~~kLl~TI~-SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 166 ELHKIPATIA-SRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred ChhhhhHHHH-hhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 3 33332211 11238999999999998888776543221 1234667889999999654
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.98 E-value=7.4e-05 Score=81.65 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=81.1
Q ss_pred ccccchhhHHHHHhhhcc-------------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccc--cceEEeeechhhhc
Q 001277 186 ELVGIDSRLEKLRFLIAT-------------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF--DGSTFLANVREKSE 250 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~ 250 (1109)
.++|.+...++|.+.... ..+...-+.++|++|+||||+|+.+++.+...- ....++. +.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~---- 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VE---- 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ec----
Confidence 467777666555433220 122345688999999999999999998664311 1112221 10
Q ss_pred ccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHc-CCCCceEeccCCC----------HHHHHHHHhcCCCCCCC
Q 001277 251 KEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR-QKKVLLVIDDVAD----------VEQLQNLARKRDWFGPG 319 (1109)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~----------~~~~~~l~~~~~~~~~g 319 (1109)
... +..... . +....+++.+. ...-+|+||+++. .+.++.++.........
T Consensus 82 ----~~~----l~~~~~-------g---~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~ 143 (261)
T TIGR02881 82 ----RAD----LVGEYI-------G---HTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE 143 (261)
T ss_pred ----HHH----hhhhhc-------c---chHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC
Confidence 001 111100 0 00111122221 1234889999975 23456666654433334
Q ss_pred cEEEEEeCCchhhH------h--hCCCccceEEcCCCCHHHHHHHHHHhhhc
Q 001277 320 SKIVITTRDKQLLV------A--HEVDEEHIYNLEVLSNDEALQLFSMKAFK 363 (1109)
Q Consensus 320 s~IiiTTR~~~v~~------~--~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 363 (1109)
..+|+++....... . .... ..+++++++.+|..+++.+.+..
T Consensus 144 ~~vila~~~~~~~~~~~~~p~L~sRf~--~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 144 FVLILAGYSDEMDYFLSLNPGLRSRFP--ISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEEEecCCcchhHHHHhcChHHHhccc--eEEEECCCCHHHHHHHHHHHHHH
Confidence 45566654432211 1 1122 26899999999999999877643
No 118
>PF14516 AAA_35: AAA-like domain
Probab=97.98 E-value=0.0015 Score=73.78 Aligned_cols=209 Identities=11% Similarity=0.076 Sum_probs=116.4
Q ss_pred CcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhc-ccCChHHH
Q 001277 180 KPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSE-KEGSVVSL 258 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l 258 (1109)
.|...+..|+|...-+++.+.+... ...+.|.|+-.+|||+|...+.+....+ ...+...++..... ........
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHC-CCEEEEEEeecCCCcccCCHHHH
Confidence 4556677889985555555555422 3689999999999999999998877654 22222333433222 12224545
Q ss_pred HHHHHHHHhhccCcc----------cccccccHHHHHHHH-c--CCCCceEeccCCCHHH----HHHHHhcC-------C
Q 001277 259 QKQLLSDLLKLADIS----------IWNVDDGINIIGSRL-R--QKKVLLVIDDVADVEQ----LQNLARKR-------D 314 (1109)
Q Consensus 259 ~~~ll~~l~~~~~~~----------~~~~~~~~~~l~~~L-~--~k~~LlVLDdv~~~~~----~~~l~~~~-------~ 314 (1109)
.+.+...+...-... ..........+.+.+ . +++++|+||+|+..-. .+.+.+.+ .
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 555544443211110 011122333444433 2 5899999999975421 11221111 1
Q ss_pred CCCC-CcEEEEEeCCc--hhhHhh---CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 315 WFGP-GSKIVITTRDK--QLLVAH---EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 315 ~~~~-gs~IiiTTR~~--~v~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
.... ..-.+|..... ...... ..+-...+++++++.+|...|+..+-.. -..+..++|...+||+|--
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHH
Confidence 0011 11112222211 111000 1111237999999999999999876422 1123389999999999999
Q ss_pred HHHHhhhcCC
Q 001277 389 LTVLGSFLNG 398 (1109)
Q Consensus 389 l~~l~~~L~~ 398 (1109)
+..++..+..
T Consensus 236 v~~~~~~l~~ 245 (331)
T PF14516_consen 236 VQKACYLLVE 245 (331)
T ss_pred HHHHHHHHHH
Confidence 9999988864
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=7.4e-05 Score=89.25 Aligned_cols=190 Identities=19% Similarity=0.195 Sum_probs=107.6
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+.-++.|..++..+ .-...+.++|+.|+||||+|+.++..+....... ....+ .-....
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pcg-~C~~C~ 80 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---------ATPCG-VCSACL 80 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCC-CCHHHH
Confidence 345678999999999998888643 2235678999999999999999998663221000 00000 000000
Q ss_pred HHHH----HHhhccCcccccccccHHHHHHHH--------cCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEe
Q 001277 261 QLLS----DLLKLADISIWNVDDGINIIGSRL--------RQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITT 326 (1109)
Q Consensus 261 ~ll~----~l~~~~~~~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTT 326 (1109)
.+.. ++..-. ......++.+++.+ .+++-++|+|+++... ..+.|+..+......+.+|++|
T Consensus 81 ~i~~~~~~d~~ei~----~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 81 EIDSGRFVDLIEVD----AASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHhcCCCCceeEee----ccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 0000 000000 00001111122111 2456689999998653 4666776665545667777666
Q ss_pred CCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 327 RDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 327 R~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
.+.. +.... ......++++.++.++..+.+.+.+-.... ....+..+.|++.++|.+--
T Consensus 157 ~d~~kil~tI-~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 157 TDPQKIPVTV-LSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRD 216 (527)
T ss_pred CChhhCchhH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 5432 22111 011127899999999999988876643321 22345668889999998753
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00015 Score=90.18 Aligned_cols=194 Identities=15% Similarity=0.146 Sum_probs=108.1
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc--c-eEEee-echhhhcc-cCCh
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD--G-STFLA-NVREKSEK-EGSV 255 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~-~~~~~-~~~~~~~~-~~~~ 255 (1109)
|....++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+--... . .|-.+ .++..... ++ -
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~-~ 88 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPG-S 88 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCC-C
Confidence 445678999999999999888643 22356789999999999999999987642110 0 00000 00000000 00 0
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHH-----HcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSR-----LRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
.+ +..........+++.. .+++. ..++.-++|||+++.. ...+.|+..+......+.+|++|.+
T Consensus 89 ~d--------v~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 89 LD--------VTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred Cc--------EEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00 0000000000111111 11111 2244557889999765 3466676666555567777766644
Q ss_pred c-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 329 K-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 329 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
. .+..... .....|++..++.++..+++.+.+-.... ....+....|++.++|.+..
T Consensus 160 ~~kLl~TIr-SRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 160 PDKVIGTIR-SRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hhhhhHHHH-hheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 3 3333221 11238999999999999888776533222 22335567889999998743
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00021 Score=85.54 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=108.1
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+..++.|..++..+ .-...+.++|+.|+||||+|+.++..+....... . ...+ .-...+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~--------~pCg-~C~~C~ 77 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A--------TPCG-VCESCV 77 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C--------Cccc-ccHHHH
Confidence 445678999999999999988643 2345678999999999999999998664211000 0 0000 000000
Q ss_pred HHHHHHhhccCccc--ccccccHHHHH---HHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 261 QLLSDLLKLADISI--WNVDDGINIIG---SRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~--~~~~~~~~~l~---~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
.+...-....+... ......++.++ +.+ .+++-++|||+++.. +..+.|+..+........+|++|.+
T Consensus 78 ~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred HhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00000000000000 00000111111 111 244558899999754 4567777666655567777766644
Q ss_pred -chhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 329 -KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 329 -~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
..+...... ....+++..++.++..+.+.+.+-..... -..+....|++.++|-+-
T Consensus 158 ~~kll~TI~S-Rc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 158 PEKVLPTIRS-RTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred hHhhHHHHHH-hceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 333322211 12389999999999999988776443322 223566788899999775
No 122
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00015 Score=83.64 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=106.4
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc--------ccceEEeeechhhhccc
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE--------FDGSTFLANVREKSEKE 252 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~~~~~ 252 (1109)
|....+++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++-.+ . ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-ASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-ccCC
Confidence 445678899999999999888643 234678899999999999999998876431 111111110 0 0000
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC-c
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD-K 329 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~ 329 (1109)
+ .. ...++..++... -..+++-++|+|+++.. ..++.+...+......+.+|++|.. .
T Consensus 89 ~-~~-~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 89 S-VD-DIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred C-HH-HHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 0 11 111222211100 01234457999998754 3466665544333445566655533 2
Q ss_pred hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 330 QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 330 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
.+..... .....++++++++++....+...+...... -..+....+++.++|.+-.
T Consensus 150 kl~~~l~-sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 150 KIIPTIL-SRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRD 205 (367)
T ss_pred cCCHHHH-hcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHH
Confidence 3322211 111278999999999999988877543321 2236778888888886653
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00012 Score=87.12 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=111.1
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-...... ....+ .-...+
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg-~C~sC~ 80 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCN-TCEQCR 80 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCc-ccHHHH
Confidence 445577899988888888887643 2246788999999999999999998663211000 00000 000000
Q ss_pred HHHHHHhhccCccc--ccccccHHH---HHHH-----HcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 261 QLLSDLLKLADISI--WNVDDGINI---IGSR-----LRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~--~~~~~~~~~---l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
.+.... ..+... ......++. +.+. ..+++-+||||+++.. +..+.|+..+........+|++|.+
T Consensus 81 ~i~~g~--hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 81 KVTQGM--HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred HHhcCC--CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 000000 000000 000001111 1111 1345668999999765 4466676665443456667666655
Q ss_pred c-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc-hhHHHHhhh
Q 001277 329 K-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP-LALTVLGSF 395 (1109)
Q Consensus 329 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~l~~~ 395 (1109)
. .+..... .....+++++++.++..+.+...+..... .-..+.++.|++.++|.+ .|+..+...
T Consensus 159 ~~kll~TI~-SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 159 PHKFPVTIV-SRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hhhhhHHHH-hhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 3332211 11127899999999999999887654332 123466788899999865 566665433
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.91 E-value=0.0001 Score=83.33 Aligned_cols=152 Identities=14% Similarity=0.231 Sum_probs=87.5
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....+++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ ..+. ... +....+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~-----~~~~~i~- 85 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD-----CRIDFVR- 85 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc-----ccHHHHH-
Confidence 456678899999999999888643 2346777799999999999999998764322 1221 111 1111111
Q ss_pred HHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH---HHHHHHHhcCCCCCCCcEEEEEeCCchhhHhhCC
Q 001277 261 QLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV---EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEV 337 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~ 337 (1109)
..+....... .+.+.+-++|+||++.. +..+.+...+.....+.++|+||.........-.
T Consensus 86 ~~l~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 86 NRLTRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred HHHHHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 1111111000 01134457899999765 2233333333334567889998875432111100
Q ss_pred CccceEEcCCCCHHHHHHHHHH
Q 001277 338 DEEHIYNLEVLSNDEALQLFSM 359 (1109)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~ 359 (1109)
.....+.++..+.++..+++..
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHH
Confidence 1112678888888888777654
No 125
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.86 E-value=8.3e-05 Score=85.89 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=90.4
Q ss_pred ccccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhc
Q 001277 182 EILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSE 250 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 250 (1109)
....++.|.+.++++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+.. .+
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~-se--- 252 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG-SE--- 252 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec-ch---
Confidence 3446778999999998877642 1123456889999999999999999998765541 1110 00
Q ss_pred ccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----------------HHHHHHhcCC
Q 001277 251 KEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----------------QLQNLARKRD 314 (1109)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~ 314 (1109)
+ ... ... .........+.....+.+.+|+||+++... .+..++..+.
T Consensus 253 ----L---~~k----~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 253 ----L---IQK----YLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred ----h---hhh----hcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh
Confidence 0 000 000 000001111122223567899999975321 1222222222
Q ss_pred CC--CCCcEEEEEeCCchhhHhhCC---CccceEEcCCCCHHHHHHHHHHhhhc
Q 001277 315 WF--GPGSKIVITTRDKQLLVAHEV---DEEHIYNLEVLSNDEALQLFSMKAFK 363 (1109)
Q Consensus 315 ~~--~~gs~IiiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~ 363 (1109)
.+ ..+.+||.||.....+...-. .-...++++..+.++..++|..++.+
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 11 235678888875543322111 11237899999999999999987643
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.84 E-value=0.00011 Score=91.93 Aligned_cols=153 Identities=14% Similarity=0.210 Sum_probs=87.8
Q ss_pred ccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc------cceEEeeechhhhcccCCh
Q 001277 182 EILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 255 (1109)
...+.++||+.+++++...|... ...-+.++|++|+|||++|+.+++++...- ...+|..+...
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~-------- 248 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS-------- 248 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH--------
Confidence 34467999999999999888643 234567999999999999999999875431 22233322111
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHH-cCCCCceEeccCCCH-----------HHHHHHHhcCCCCCCC-cEE
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-RQKKVLLVIDDVADV-----------EQLQNLARKRDWFGPG-SKI 322 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-----------~~~~~l~~~~~~~~~g-s~I 322 (1109)
+.. .. ... .+.++.+..+.+.+ ..++.+|++|+++.. +..+.|.+.+. .| -++
T Consensus 249 --l~a----~~----~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~ 314 (731)
T TIGR02639 249 --LLA----GT----KYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRC 314 (731)
T ss_pred --Hhh----hc----ccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEE
Confidence 100 00 000 11122222222222 246789999998633 12233444332 33 344
Q ss_pred EEEeCCchh--------hHhhCCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 323 VITTRDKQL--------LVAHEVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 323 iiTTR~~~v--------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
|-+|..... +-.... ..+++++++.++..+++....
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf---~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRF---QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhC---ceEEeCCCCHHHHHHHHHHHH
Confidence 544443221 111112 278999999999999998654
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00063 Score=82.88 Aligned_cols=197 Identities=16% Similarity=0.144 Sum_probs=111.0
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+.......- ....+ .-...+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--------~~~c~-~c~~c~ 81 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--------GRPCG-TCEMCR 81 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCc-cCHHHH
Confidence 445678999999999998888643 23456789999999999999999987642110000 00000 001111
Q ss_pred HHHHHHhh----ccCcccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 261 QLLSDLLK----LADISIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 261 ~ll~~l~~----~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
.+...... -........++ +..+.+.+ .+++-++|||+++.. +..+.|+..+....+.+.+|++|.+.
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 11110000 00000001111 11112222 134568999999754 45677766555445667777666543
Q ss_pred -hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 001277 330 -QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 391 (1109)
Q Consensus 330 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 391 (1109)
.+..... .....+++..++.++..+.+.+.+...... -..+.+..+++.++|.+..+..
T Consensus 161 ~kll~tI~-SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 161 HKVPATIL-SRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhhHHHH-hccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 3322211 111278899999999999888876543322 2236678899999998865443
No 128
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00037 Score=84.01 Aligned_cols=196 Identities=18% Similarity=0.174 Sum_probs=111.5
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccc---eEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDG---STFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~ 257 (1109)
|....++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-..... ..-+. ..+ .-.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-------~cg-~c~ 90 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-------LCG-VGE 90 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-------cCc-ccH
Confidence 445678999999999999988643 234568899999999999999999876432210 00000 000 000
Q ss_pred HHHHHHHHHhhccCcccc--cccccHHHHHHH---H-----cCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEE
Q 001277 258 LQKQLLSDLLKLADISIW--NVDDGINIIGSR---L-----RQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVIT 325 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~--~~~~~~~~l~~~---L-----~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiT 325 (1109)
..+.+..... .+.... .....++.+++. + .+++-++|+|+++... ..+.|+..+....+++.+|++
T Consensus 91 ~C~~i~~g~h--~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~ 168 (598)
T PRK09111 91 HCQAIMEGRH--VDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168 (598)
T ss_pred HHHHHhcCCC--CceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 0011111000 000000 000112222222 1 2344578999996653 466666655544567777665
Q ss_pred e-CCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 326 T-RDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 326 T-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
| ....+..... .....+++..++.++..+.+.+.+-.... .-..+..+.|++.++|.+.-+.
T Consensus 169 tte~~kll~tI~-SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 169 TTEIRKVPVTVL-SRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred eCChhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 5 3333332221 11237999999999999999887743332 2233677889999999886543
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.0012 Score=77.92 Aligned_cols=193 Identities=15% Similarity=0.159 Sum_probs=108.3
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-----ccceEEeeechhhhc-ccCC
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-----FDGSTFLANVREKSE-KEGS 254 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~-~~~~ 254 (1109)
|.....++|.+.-++.|...+..+ .-.+...++|+.|+||||+|+.++..+... .++.. ..++..... .+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~- 88 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFP- 88 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCC-
Confidence 445578899999999999888643 234566789999999999999999866421 01100 000000000 000
Q ss_pred hHHHHHHHHHHHhhccCcccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeC
Q 001277 255 VVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTR 327 (1109)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 327 (1109)
++..-........+ .+..+.+.. .+++-++|+|+++.. +..+.|+..+....+...+|++|.
T Consensus 89 ----------d~~eidaas~~gvd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 89 ----------DLIEIDAASNRGID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred ----------cEEEEeCccCCCHH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 00000000000000 011222222 245569999999755 346666665554455666666554
Q ss_pred C-chhhHhh-CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 001277 328 D-KQLLVAH-EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 391 (1109)
Q Consensus 328 ~-~~v~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 391 (1109)
+ ..+.... ... ..+++.+++.++..+.+...+-.... ....+.+..+++.++|.+..+..
T Consensus 158 ~~~kl~~tI~SRc--~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 158 EYDKIPPTILSRC--QRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred CHHHHHHHHHHhc--eEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3 2332221 112 27999999999999988887643332 22336677888999998764433
No 130
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=3.4e-07 Score=105.34 Aligned_cols=43 Identities=35% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~ 823 (1109)
+.++.+|+.||+++|-+.+-.--.-++.|.+|+.|+|.||.+-
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3445556666666655533211122455566666666666554
No 131
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.83 E-value=0.00011 Score=85.96 Aligned_cols=162 Identities=15% Similarity=0.227 Sum_probs=90.5
Q ss_pred ccccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc-----ceEEeeec
Q 001277 182 EILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD-----GSTFLANV 245 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~ 245 (1109)
.....+.|.+..+++|...+.. +-...+-+.++|++|.|||++|+++++.+...+. ...|+. +
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-I 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-c
Confidence 3456788899999988776531 1123456899999999999999999998765421 233332 2
Q ss_pred hhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH-HcCCCCceEeccCCCHH---------H-----HHHHH
Q 001277 246 REKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR-LRQKKVLLVIDDVADVE---------Q-----LQNLA 310 (1109)
Q Consensus 246 ~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~---------~-----~~~l~ 310 (1109)
....--.. ...-....++ ......++. -.+++++|+||+++..- + +..++
T Consensus 258 ~~~eLl~k-yvGete~~ir--------------~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 258 KGPELLNK-YVGETERQIR--------------LIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred cchhhccc-ccchHHHHHH--------------HHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 11000000 0000000001 111122221 13578999999997531 1 23444
Q ss_pred hcCCCCC--CCcEEEEEeCCchhhH-hh----CCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 311 RKRDWFG--PGSKIVITTRDKQLLV-AH----EVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 311 ~~~~~~~--~gs~IiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
..++... .+..||.||....... +. ..+. .++++..+.++..++|..+.
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~--~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDV--KIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccce--EEEeCCCCHHHHHHHHHHHh
Confidence 4333222 3445555665443221 11 2333 69999999999999998886
No 132
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=2.7e-07 Score=106.16 Aligned_cols=127 Identities=28% Similarity=0.226 Sum_probs=90.4
Q ss_pred CCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccC
Q 001277 692 RSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRS 771 (1109)
Q Consensus 692 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~ 771 (1109)
..|.+.+.+.|. +..+-+.+.-++.|+.|+|++|.+.... .+..++.|++|||+.|.......
T Consensus 164 n~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~--------------- 226 (1096)
T KOG1859|consen 164 NKLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQ--------------- 226 (1096)
T ss_pred hhHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccc---------------
Confidence 345555665554 4445566777788999999999998876 78889999999999876432210
Q ss_pred CCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccc--hhhhccCCCCceeccCCcCc
Q 001277 772 YPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP--ASINSLFNLGQLDLEDCKRL 846 (1109)
Q Consensus 772 ~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~c~~L 846 (1109)
-...++. |+.|.|++|.+++ + ..+.+|.+|+-|+|++|-+..-. .-+..|..|+.|+|.+|+..
T Consensus 227 -------l~~~gc~-L~~L~lrnN~l~t--L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 227 -------LSMVGCK-LQLLNLRNNALTT--L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -------cchhhhh-heeeeecccHHHh--h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 0123343 8999999998843 2 45788999999999999665322 23566788999999999864
No 133
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.82 E-value=0.00024 Score=81.65 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=98.7
Q ss_pred CcccccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhh
Q 001277 180 KPEILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREK 248 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 248 (1109)
+.....++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- .+. ..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~--~s- 213 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV--GS- 213 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe--hH-
Confidence 334456789999999888776541 1124577999999999999999999987654431 111 00
Q ss_pred hcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----------------HHHHHHhc
Q 001277 249 SEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----------------QLQNLARK 312 (1109)
Q Consensus 249 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~ 312 (1109)
.+ ...... .........+.......+.+|+||+++... .+..++..
T Consensus 214 --------~l----~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ 275 (398)
T PTZ00454 214 --------EF----VQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ 275 (398)
T ss_pred --------HH----HHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH
Confidence 00 000000 000001111222234578899999986431 12233333
Q ss_pred CCCC--CCCcEEEEEeCCchhhHh-h----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC
Q 001277 313 RDWF--GPGSKIVITTRDKQLLVA-H----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL 385 (1109)
Q Consensus 313 ~~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 385 (1109)
+..+ ..+..||.||........ . ..+. .++++..+.++..++|..+..+.... .+ -....+++.+.|.
T Consensus 276 ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~--~I~~~~P~~~~R~~Il~~~~~~~~l~-~d--vd~~~la~~t~g~ 350 (398)
T PTZ00454 276 MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDR--KIEFPLPDRRQKRLIFQTITSKMNLS-EE--VDLEDFVSRPEKI 350 (398)
T ss_pred hhccCCCCCEEEEEecCCchhCCHHHcCCCcccE--EEEeCCcCHHHHHHHHHHHHhcCCCC-cc--cCHHHHHHHcCCC
Confidence 3221 245678888875543221 1 2333 78999999999999998765432211 11 1134555666665
Q ss_pred c
Q 001277 386 P 386 (1109)
Q Consensus 386 P 386 (1109)
-
T Consensus 351 s 351 (398)
T PTZ00454 351 S 351 (398)
T ss_pred C
Confidence 3
No 134
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.82 E-value=3.7e-05 Score=74.04 Aligned_cols=90 Identities=21% Similarity=0.403 Sum_probs=48.3
Q ss_pred ccEEEccccccCccchHHHHHHHHHhC-------CCce----------EeeCCCCCCCCCCcHHHHHHHHhcceEEEEec
Q 001277 14 YDAFLSFRGEDTRKSFTDHLYAALKNK-------GIYV----------FKDDKELEKGGSISPNLLEAIEESRISIIVLS 76 (1109)
Q Consensus 14 ~dvfis~~~~D~~~~~~~~l~~~L~~~-------g~~~----------~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S 76 (1109)
|.|||||++.|. ....+.|...+... .+.. +.+..+....+.+...|.++|.+|..+||++|
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 679999999994 23677777777763 2211 12222233445789999999999999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCceEEeEEe
Q 001277 77 KNYASSTWCLDELVKIVECKKRDHEIFPIFY 107 (1109)
Q Consensus 77 ~~y~~s~~c~~El~~~~~~~~~~~~v~pv~~ 107 (1109)
++-..|.|+..|+..+++ .+..|+.|..
T Consensus 80 ~~T~~s~wV~~EI~~A~~---~~~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK---KGKPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTT---T---EEEEET
T ss_pred CCcccCcHHHHHHHHHHH---CCCCEEEEEC
Confidence 999999999999999887 3445666664
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00055 Score=80.23 Aligned_cols=161 Identities=18% Similarity=0.134 Sum_probs=92.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcccc-ceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFD-GSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
...+.|+|.+|+|||+||+++++.+....+ ..+.+.. ...+...+...+.. . ....+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~------~----~~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKE------G----KLNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhc------c----cHHHHHH
Confidence 445899999999999999999998876543 2333321 22223333332221 1 1223444
Q ss_pred HHcCCCCceEeccCCCH---H-HHHHHHhcCCC-CCCCcEEEEEeC-CchhhHhh------CCCccceEEcCCCCHHHHH
Q 001277 287 RLRQKKVLLVIDDVADV---E-QLQNLARKRDW-FGPGSKIVITTR-DKQLLVAH------EVDEEHIYNLEVLSNDEAL 354 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~---~-~~~~l~~~~~~-~~~gs~IiiTTR-~~~v~~~~------~~~~~~~~~l~~L~~~ea~ 354 (1109)
.++.+.-+|+|||++.. . .-+.+...+.. ...|..||+||. .+.-.... +.....++++++.+.++-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 44445668999999743 1 11222222111 123557888885 33211111 1122237899999999999
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 355 QLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 355 ~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
+++.+.+-.... .-.++....|++.+.|.--.|.
T Consensus 270 ~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 270 KIARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHhcCC--CCCHHHHHHHHhccccCHHHHH
Confidence 999888753222 2234667788888877655443
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.80 E-value=0.00013 Score=77.09 Aligned_cols=193 Identities=16% Similarity=0.203 Sum_probs=116.7
Q ss_pred CcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc--cccceEEeeechhhhcccCChH-
Q 001277 180 KPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH--EFDGSTFLANVREKSEKEGSVV- 256 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~- 256 (1109)
.|...++++|.+..+..|...+.. ........+|++|.|||+-|+++++.+-. -|++++.=.+. +...| ..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderG-isv 104 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERG-ISV 104 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---ccccc-ccc
Confidence 355667899999999999888864 46778889999999999999999986533 34444332211 11111 11
Q ss_pred -HHHHHHHHHHhhccCcccccccccHHHHHHHHcCCC-CceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCCchhh
Q 001277 257 -SLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKK-VLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQLL 332 (1109)
Q Consensus 257 -~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 332 (1109)
.....-++++...... . ... ..++ =.||||+++... .|.+|......+...+|.|+.|..-...
T Consensus 105 vr~Kik~fakl~~~~~~--~---------~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 105 VREKIKNFAKLTVLLKR--S---------DGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred hhhhhcCHHHHhhcccc--c---------cCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 1111111111100000 0 000 0122 378999998764 5888888777777778877666543321
Q ss_pred HhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC-chhHHHH
Q 001277 333 VAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL-PLALTVL 392 (1109)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l 392 (1109)
...-.....-+..++|.+++..+-+...+-.++.+. ..+..+.|++.++|- --|+..+
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 111111112689999999999999888885544333 346788899999884 3344444
No 137
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.79 E-value=2.7e-05 Score=63.83 Aligned_cols=57 Identities=30% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCC
Q 001277 646 DLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGC 702 (1109)
Q Consensus 646 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 702 (1109)
+|++|++++|.+..+|. .+..+++|++|++++|....--|..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444445554442 3444455555555443332222233444555555555444
No 138
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00046 Score=80.99 Aligned_cols=192 Identities=18% Similarity=0.231 Sum_probs=106.0
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc---cc-eEEe-eechhhhcccCCh
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF---DG-STFL-ANVREKSEKEGSV 255 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---~~-~~~~-~~~~~~~~~~~~~ 255 (1109)
|....+++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..- +. .|-. .+++....... .
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~-~ 90 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS-L 90 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC-C
Confidence 345678999999999999888643 2235678999999999999999998663210 00 0000 00000000000 0
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
. +..-.+......++ +..+.+.+ .+++-++|+|+++.. +..+.|...+.....+..+|++|.+
T Consensus 91 d---------~~~i~g~~~~gid~-ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~ 160 (451)
T PRK06305 91 D---------VLEIDGASHRGIED-IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160 (451)
T ss_pred c---------eEEeeccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCC
Confidence 0 00000000000011 11111111 245668899998755 3456666555544456677766643
Q ss_pred c-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 329 K-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 329 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
. .+..... .....++++++++++..+.+...+-... ..-..+.++.+++.++|.+-
T Consensus 161 ~~kl~~tI~-sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 161 IHKIPGTIL-SRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLR 217 (451)
T ss_pred hHhcchHHH-HhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 2 2222211 1112799999999999998887664322 12234677889999999764
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.78 E-value=0.0012 Score=77.31 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=91.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccc-eEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDG-STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
...+.|+|.+|+|||+||+++++.+..+.+. .+.+.. ...+...+...+.. . ....+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~------~----~~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRN------N----KMEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHc------C----CHHHHHH
Confidence 3568899999999999999999988766432 232221 12222233333221 1 1233344
Q ss_pred HHcCCCCceEeccCCCHH----HHHHHHhcCCC-CCCCcEEEEEeCCc-hhhHhh------CCCccceEEcCCCCHHHHH
Q 001277 287 RLRQKKVLLVIDDVADVE----QLQNLARKRDW-FGPGSKIVITTRDK-QLLVAH------EVDEEHIYNLEVLSNDEAL 354 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~-~v~~~~------~~~~~~~~~l~~L~~~ea~ 354 (1109)
.+++ .-+|||||++... ..+.+...+.. ...|..||+|+... ...... ......++++++.+.++..
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 4433 3488999996431 12223322211 12455688877642 211110 1122237899999999999
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 355 QLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 355 ~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
+++...+-.... .-.++....|++.+.|..-.+.
T Consensus 275 ~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 275 AILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHH
Confidence 999988754322 2234667777787777765443
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.78 E-value=0.00013 Score=88.86 Aligned_cols=50 Identities=30% Similarity=0.454 Sum_probs=40.5
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
|...+.++|++..+..+...+.. .....+.|+|++|+||||||+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45567899999999988777643 334679999999999999999998755
No 141
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00044 Score=83.79 Aligned_cols=187 Identities=18% Similarity=0.198 Sum_probs=106.7
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-. +... ..
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C----------~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQEC----------IE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHH----------HH
Confidence 445678999999999999888643 23456789999999999999999986532110000000 0000 00
Q ss_pred HHHHHHhhccCc------ccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeC
Q 001277 261 QLLSDLLKLADI------SIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTR 327 (1109)
Q Consensus 261 ~ll~~l~~~~~~------~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 327 (1109)
. .....+. .....++ +..+.+.+ .+++-++|+|+++.. ..+..|+..+....+...+|++|.
T Consensus 82 -~---~~~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTt 156 (725)
T PRK07133 82 -N---VNNSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATT 156 (725)
T ss_pred -h---hcCCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcC
Confidence 0 0000000 0000010 11222222 245568899999754 456777766554455666565554
Q ss_pred -CchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 328 -DKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 328 -~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
...+..... .....+++.+++.++..+.+...+-.... ....+.++.+++.++|-+-
T Consensus 157 e~~KLl~TI~-SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 157 EVHKIPLTIL-SRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred ChhhhhHHHH-hhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 333332211 11128999999999999988876543321 2223567789999988764
No 142
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00035 Score=82.42 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=110.4
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-ccc--eEEee-echhhhcccCChH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-FDG--STFLA-NVREKSEKEGSVV 256 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~--~~~~~-~~~~~~~~~~~~~ 256 (1109)
|....++||-+.-.+.|...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ... .|... .++.......
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h--- 85 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRH--- 85 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCC---
Confidence 445678999999999998888643 234566899999999999999999876321 100 00000 0000000000
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHH--------cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEe
Q 001277 257 SLQKQLLSDLLKLADISIWNVDDGINIIGSRL--------RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITT 326 (1109)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT 326 (1109)
..+..... .....++.+++.. .+++-++|+|+++.. +..+.|+..+....+.+++|++|
T Consensus 86 -------~dv~elda----as~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 86 -------IDIIEMDA----ASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred -------CeEEEecc----ccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 00000000 0000111222111 134558899999765 44666766655556678888777
Q ss_pred CCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 327 RDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 327 R~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
.+.. +...... ....+++.+++.++..+.+.+.+-..... -..+.++.|++.++|-+.-+.
T Consensus 155 td~~kL~~tI~S-Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 155 TDPLKLPATILS-RTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred CChhhCchHHHh-hceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 6642 2111111 12389999999999999988776443322 234677889999999885443
No 143
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0017 Score=79.01 Aligned_cols=192 Identities=19% Similarity=0.157 Sum_probs=106.3
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccc----eEEee-echhhhcc--cC
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDG----STFLA-NVREKSEK--EG 253 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~----~~~~~-~~~~~~~~--~~ 253 (1109)
|...+++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..... .|-.+ .++..... .+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 345678999999999999888643 234568899999999999999998866321100 00000 00000000 00
Q ss_pred ChHHHHHHHHHHHhhccCcccccccccHHHHHHH----HcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEe-
Q 001277 254 SVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR----LRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITT- 326 (1109)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT- 326 (1109)
+.. + ...+. ...++....+... ..+++=++|+|+++.. +..+.|+..+.....++.+|++|
T Consensus 92 -~~~--------l-d~~~~--~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 92 -IHE--------L-DAASN--NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred -eEE--------e-ccccc--CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 000 0 00000 0011111111000 1133447899999765 34666766655445667766655
Q ss_pred CCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 327 RDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 327 R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
+...+..... ....++++.+++.++..+.+...+-.... ....+.+..|++.++|-.--
T Consensus 160 ~~~kIl~tI~-SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 160 EKHKILPTIL-SRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred CchhchHHHH-hhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 4344433221 11238999999999999998877644332 22235678889999986653
No 144
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.0021 Score=77.28 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=110.5
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-----ccceEEeeechhhhcccCCh
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-----FDGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~ 255 (1109)
|....++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .++.. ...++....... .
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~-~ 88 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNS-L 88 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCC-C
Confidence 455678999999999999988643 234568899999999999999999866421 11100 000000000000 0
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHH--------HcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEE
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSR--------LRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVIT 325 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~--------L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiT 325 (1109)
. +..- + ......++.+++. ..+++-++|+|+++.. +.++.|+..+....+...+|++
T Consensus 89 d---------v~~i-d---gas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~ 155 (563)
T PRK06647 89 D---------VIEI-D---GASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFA 155 (563)
T ss_pred C---------eEEe-c---CcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEe
Confidence 0 0000 0 0000111112111 1345568999999765 4467777766655566777766
Q ss_pred eCCc-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 326 TRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 326 TR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
|.+. .+..... .....+++.+++.++..+.+.+.+...... -..+.+..|++.++|.+-.+
T Consensus 156 tte~~kL~~tI~-SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 156 TTEVHKLPATIK-SRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred cCChHHhHHHHH-HhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 6543 3322211 111268999999999999988877543322 23466778899999987543
No 145
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.73 E-value=3.1e-05 Score=63.47 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=16.9
Q ss_pred cccCCCCCcEEeccCccCcccCC-cccCCCCCcEEeeecc
Q 001277 640 SLGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNC 678 (1109)
Q Consensus 640 ~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c 678 (1109)
.+..+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 33444444444444444444432 3444444444444444
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=1.6e-05 Score=82.83 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=33.8
Q ss_pred CCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~ 823 (1109)
...++.+-.|+|+.+++....--+.+..+++|..|.+++|.+.
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 4456677788999999866555567888999999999998775
No 147
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.71 E-value=0.00056 Score=81.03 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=92.6
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccc-eEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDG-STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
...+.|+|.+|+|||+||+++++.+..+++. .+.+.. ...+...+...+.. . ....+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~------~----~~~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRN------N----TMEEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHc------C----cHHHHHH
Confidence 4568999999999999999999988776543 232221 12222223222211 0 1233444
Q ss_pred HHcCCCCceEeccCCCHH----HHHHHHhcCCC-CCCCcEEEEEeCCch-hh----Hh--hCCCccceEEcCCCCHHHHH
Q 001277 287 RLRQKKVLLVIDDVADVE----QLQNLARKRDW-FGPGSKIVITTRDKQ-LL----VA--HEVDEEHIYNLEVLSNDEAL 354 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~-v~----~~--~~~~~~~~~~l~~L~~~ea~ 354 (1109)
.++ +.-+|||||++... ..+.+...+.. ...|..||+|+.... .. .. .......++++++.+.++..
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 444 34589999996431 12233322211 124556888776432 11 11 11222237999999999999
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 355 QLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 355 ~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
+++..++-... ..-.++...-|++.+.|..-.+
T Consensus 287 ~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 287 AILKKKAEEEG--IDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHH
Confidence 99999885422 2223467778888888876644
No 148
>PRK06620 hypothetical protein; Validated
Probab=97.71 E-value=0.00021 Score=75.09 Aligned_cols=133 Identities=14% Similarity=0.013 Sum_probs=76.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 288 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1109)
+.+.|+|++|+|||+|++++++.... .++.. .. .. . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~------~~--~~------------------~----------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD------IF--FN------------------E----------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch------hh--hc------------------h----------hHH
Confidence 66899999999999999987764421 22210 00 00 0 011
Q ss_pred cCCCCceEeccCCCHHHHHHHHhcCCC-CCCCcEEEEEeCCchh-------hHhhCCCccceEEcCCCCHHHHHHHHHHh
Q 001277 289 RQKKVLLVIDDVADVEQLQNLARKRDW-FGPGSKIVITTRDKQL-------LVAHEVDEEHIYNLEVLSNDEALQLFSMK 360 (1109)
Q Consensus 289 ~~k~~LlVLDdv~~~~~~~~l~~~~~~-~~~gs~IiiTTR~~~v-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 360 (1109)
+..-++++||++...+ ..+...++. ...|..||+|++.... ....... .++++++++.++..+++.+.
T Consensus 84 -~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 84 -EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKH 159 (214)
T ss_pred -hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHH
Confidence 1234788999975433 222222111 1356789999884321 1112222 37999999999988888777
Q ss_pred hhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 361 AFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 361 af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
+.... ..-.+++.+-|++.+.|---.
T Consensus 160 ~~~~~--l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 160 FSISS--VTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHHcC--CCCCHHHHHHHHHHccCCHHH
Confidence 64221 112235566666666554433
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.67 E-value=0.00043 Score=87.46 Aligned_cols=183 Identities=11% Similarity=0.046 Sum_probs=97.8
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc------ceEEeeechhhhcccCC
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD------GSTFLANVREKSEKEGS 254 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~~~~~~~ 254 (1109)
+...+.+|||+.++.++...|... ...-+.++|.+|+||||+|+.+++++....- ..+|..++........
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~- 259 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS- 259 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc-
Confidence 345568999999999999888643 2345669999999999999999998854321 1222222211100000
Q ss_pred hHHHHHHHHHHHhhccCcccccccccHHHHHHHH--cCCCCceEeccCCCHH-------HHH---HHHhcCCCCCCCcEE
Q 001277 255 VVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL--RQKKVLLVIDDVADVE-------QLQ---NLARKRDWFGPGSKI 322 (1109)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~-------~~~---~l~~~~~~~~~gs~I 322 (1109)
.. .+.++.+..+.+.+ .+++++|++|++.... +.+ .|.+.+. ...-++
T Consensus 260 ~~------------------ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~ 319 (852)
T TIGR03345 260 VK------------------GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRT 319 (852)
T ss_pred cc------------------hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEE
Confidence 00 11111111111111 2468999999985431 111 2334332 123456
Q ss_pred EEEeCCchhhHhhCC-----CccceEEcCCCCHHHHHHHHHHhhhc--CCCCCchHHHHHHHHHHHhCCCc
Q 001277 323 VITTRDKQLLVAHEV-----DEEHIYNLEVLSNDEALQLFSMKAFK--TRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 323 iiTTR~~~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~--~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
|-||........... ..-.++.+++++.+++.+++....-. ......-..+....+++.+.+..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 666654321111000 01128999999999999997544311 11111223455566666665543
No 150
>PRK08116 hypothetical protein; Validated
Probab=97.67 E-value=0.00024 Score=77.46 Aligned_cols=101 Identities=22% Similarity=0.233 Sum_probs=56.4
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 288 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1109)
..+.++|.+|+|||.||.++++.+..+-..++|+. ...+...+...... +.......+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~-------~~~~~~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKS-------SGKEDENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhc-------cccccHHHHHHHh
Confidence 45889999999999999999998876633344443 22233333222211 0111223344445
Q ss_pred cCCCCceEeccCC--CHHH--HHHHHhcCCC-CCCCcEEEEEeCC
Q 001277 289 RQKKVLLVIDDVA--DVEQ--LQNLARKRDW-FGPGSKIVITTRD 328 (1109)
Q Consensus 289 ~~k~~LlVLDdv~--~~~~--~~~l~~~~~~-~~~gs~IiiTTR~ 328 (1109)
.+-. ||||||+. .... .+.+...++. ...|..+||||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 5444 89999993 2222 2223222221 2356679999974
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.67 E-value=0.00078 Score=74.26 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=71.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhccc--cceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHEF--DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
-+.++|++|.||||+|+.++..+...- ....|+... .. .+...+.. ... ..+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---------~~----~l~~~~~g------~~~----~~~~~~ 116 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---------RD----DLVGQYIG------HTA----PKTKEI 116 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---------HH----HHhHhhcc------cch----HHHHHH
Confidence 588999999999999999888665421 111233210 01 11111111 000 111222
Q ss_pred Hc-CCCCceEeccCCCH-----------HHHHHHHhcCCCCCCCcEEEEEeCCchhhHhhCCC------ccceEEcCCCC
Q 001277 288 LR-QKKVLLVIDDVADV-----------EQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVD------EEHIYNLEVLS 349 (1109)
Q Consensus 288 L~-~k~~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~------~~~~~~l~~L~ 349 (1109)
+. -..-+|+||+++.. +.++.|...+.....+.+||+++............ -...+++++++
T Consensus 117 ~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~ 196 (284)
T TIGR02880 117 LKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYS 196 (284)
T ss_pred HHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcC
Confidence 21 13468899999632 23455555554444566777776543221111111 01279999999
Q ss_pred HHHHHHHHHHhhh
Q 001277 350 NDEALQLFSMKAF 362 (1109)
Q Consensus 350 ~~ea~~Lf~~~af 362 (1109)
.+|..+++...+-
T Consensus 197 ~edl~~I~~~~l~ 209 (284)
T TIGR02880 197 EAELLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 152
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.67 E-value=4.7e-05 Score=84.64 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=60.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc-cccceEEeeechhhhcccCChHHHHHHHHHHHh-hccCccc----cccccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISI----WNVDDG 280 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~----~~~~~~ 280 (1109)
.....+|+|++|+||||||+++|+.+.. +|+..+|+..+.+..+ . +.++++.+...+. ...+..+ .-....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~--E-VtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPE--E-VTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchh--H-HHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 3467889999999999999999997765 6999989887666321 2 6667766653322 1111100 000111
Q ss_pred HHHHHHH-HcCCCCceEeccCCCHHH
Q 001277 281 INIIGSR-LRQKKVLLVIDDVADVEQ 305 (1109)
Q Consensus 281 ~~~l~~~-L~~k~~LlVLDdv~~~~~ 305 (1109)
.+..+.. -.+++++|++|++.....
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHHHH
Confidence 2222222 257999999999966544
No 153
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.00099 Score=77.88 Aligned_cols=154 Identities=15% Similarity=0.091 Sum_probs=85.3
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
...+.|+|+.|+|||+||+++++.+...-...+++. ...+...+...+.. . ....++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~------~----~~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRS------G----EMQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhc------c----hHHHHHHH
Confidence 356889999999999999999998765433334443 12222222222211 0 12233444
Q ss_pred HcCCCCceEeccCCCHH----HHHHHHhcCCC-CCCCcEEEEEeCCc-hhh----Hhh--CCCccceEEcCCCCHHHHHH
Q 001277 288 LRQKKVLLVIDDVADVE----QLQNLARKRDW-FGPGSKIVITTRDK-QLL----VAH--EVDEEHIYNLEVLSNDEALQ 355 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~-~v~----~~~--~~~~~~~~~l~~L~~~ea~~ 355 (1109)
++ +.-+|+|||+.... ..+.+...++. ...|..||+||... ... ... +.....++++.+++.++..+
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 43 34588899985532 12233222211 12456788888542 111 111 12223489999999999999
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHHhCCC
Q 001277 356 LFSMKAFKTRQPMGEYVELSKRVLKYAGGL 385 (1109)
Q Consensus 356 Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 385 (1109)
++.+++-.... .-.++...-|++.+.|.
T Consensus 279 iL~~k~~~~~~--~l~~evl~~la~~~~~d 306 (445)
T PRK12422 279 FLERKAEALSI--RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCC
Confidence 99888744321 12234555565555544
No 154
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0011 Score=80.10 Aligned_cols=192 Identities=15% Similarity=0.150 Sum_probs=107.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....++||.+...+.|...+..+. -.+...++|+.|+||||+|+.++..+-..-... ....+ .-...+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~-~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCN-ECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCC-ccHHHH
Confidence 4566789999999999999887432 346677899999999999999988653211000 00000 000001
Q ss_pred HHHHHHhhccCccc--ccccccHHHH---HHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 261 QLLSDLLKLADISI--WNVDDGINII---GSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~--~~~~~~~~~l---~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
.+.... ..+... ......++.+ .+.. .++.-++|+|+++.. ..+..|+..+........+|++|..
T Consensus 81 ~i~~g~--~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 81 AITNGS--LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHhcCC--CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 110000 000000 0000112222 2221 245568899999865 4577777665544455566655543
Q ss_pred c-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 329 K-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 329 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
. .+..... .....+++.+++.++..+.+...+-..... -..+.+..|++.++|-+..
T Consensus 159 ~~ki~~tI~-SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 159 PHKIPATIL-SRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred hhhCcHHHH-hHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3 3222211 111278899999999999888776433322 2235677888888887653
No 155
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00077 Score=81.89 Aligned_cols=198 Identities=18% Similarity=0.149 Sum_probs=109.4
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|.....++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.......- ....+ .-...+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~-------~~~Cg-~C~~C~ 82 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT-------PEPCG-KCELCR 82 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC-------CCCCc-ccHHHH
Confidence 3456788999999999998887432 23567899999999999999999876432100000 00000 001111
Q ss_pred HHHHHHhhcc-CcccccccccHHHHHHHH--------cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 261 QLLSDLLKLA-DISIWNVDDGINIIGSRL--------RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 261 ~ll~~l~~~~-~~~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
.+........ ... ......++.+++.+ .+++-++|||+++.. +..+.|+..+........+|++|.+.
T Consensus 83 ~i~~g~h~D~~ei~-~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 83 AIAAGNALDVIEID-AASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHhcCCCccEEEEe-ccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 1111000000 000 00011122222221 234558899999865 45677766655434556666555543
Q ss_pred -hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 001277 330 -QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 391 (1109)
Q Consensus 330 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 391 (1109)
.+..... .....+++..++.++..+.+.+.+-..... -..+.+..|++.++|.+..+..
T Consensus 162 ~~llpTIr-SRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 162 QRVLPTII-SRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 3322221 111278899999999888887766432211 2235678899999998865443
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.0012 Score=78.64 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=87.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcccc-ceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFD-GSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
..+.|+|..|.|||.|++++++.....+. ..+.+.. ...+..++...+.. .....+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~----------~~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRD----------GKGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHh----------ccHHHHHHH
Confidence 45899999999999999999998765442 2333321 22233333322221 012233444
Q ss_pred HcCCCCceEeccCCCH---HHH-HHHHhcCCC-CCCCcEEEEEeCCc---------hhhHhhCCCccceEEcCCCCHHHH
Q 001277 288 LRQKKVLLVIDDVADV---EQL-QNLARKRDW-FGPGSKIVITTRDK---------QLLVAHEVDEEHIYNLEVLSNDEA 353 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea 353 (1109)
+++ .=+|||||++.. +.+ +.|...++. ...|..|||||+.. .+...+.. ..+++++..+.+.-
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~--GLvv~I~~PD~EtR 451 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW--GLITDVQPPELETR 451 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhc--CceEEcCCCCHHHH
Confidence 443 347889999543 111 223222211 13466788888753 11222222 33899999999999
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 354 LQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 354 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
.+++.+++-...- .-.+++..-|++.+.+..-
T Consensus 452 ~aIL~kka~~r~l--~l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 452 IAILRKKAVQEQL--NAPPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHHhccCCHH
Confidence 9999988754322 2224556666666655543
No 157
>CHL00176 ftsH cell division protein; Validated
Probab=97.62 E-value=0.00085 Score=81.59 Aligned_cols=173 Identities=16% Similarity=0.223 Sum_probs=97.2
Q ss_pred cccccccchhhHHHHHhhhc---c-------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 183 ILKELVGIDSRLEKLRFLIA---T-------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
...+++|.+...+++.+.+. . +....+-|.++|++|.|||+||++++......| +.....
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s------ 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGS------ 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHH------
Confidence 44678888887777665543 1 112245689999999999999999988653322 111100
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----------------HHHHHHhcCCCC
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----------------QLQNLARKRDWF 316 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~ 316 (1109)
.+.... .. .........+.......+.+|+|||++... .+..++...+.+
T Consensus 251 ----~f~~~~----~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~ 316 (638)
T CHL00176 251 ----EFVEMF----VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF 316 (638)
T ss_pred ----HHHHHh----hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc
Confidence 000000 00 000111222333445678999999996541 133444333222
Q ss_pred --CCCcEEEEEeCCchhhHh-h----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCC
Q 001277 317 --GPGSKIVITTRDKQLLVA-H----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGG 384 (1109)
Q Consensus 317 --~~gs~IiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G 384 (1109)
..+..||.||........ . ..+. .+.++..+.++..+++..++-.... ........+++.+.|
T Consensus 317 ~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~--~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 317 KGNKGVIVIAATNRVDILDAALLRPGRFDR--QITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred cCCCCeeEEEecCchHhhhhhhhccccCce--EEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 345566777765433221 1 2233 7899999999999999888744211 112334567777776
No 158
>CHL00181 cbbX CbbX; Provisional
Probab=97.62 E-value=0.0011 Score=73.00 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=72.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcc-c-cceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHE-F-DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
..+.++|.+|+||||+|+.++...... + ...-|+... .. .+...... .........+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~---------~~----~l~~~~~g------~~~~~~~~~l~~ 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT---------RD----DLVGQYIG------HTAPKTKEVLKK 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec---------HH----HHHHHHhc------cchHHHHHHHHH
Confidence 357899999999999999998865321 1 111122100 11 11111111 000011111211
Q ss_pred HHcCCCCceEeccCCCH-----------HHHHHHHhcCCCCCCCcEEEEEeCCchhhH--------hhCCCccceEEcCC
Q 001277 287 RLRQKKVLLVIDDVADV-----------EQLQNLARKRDWFGPGSKIVITTRDKQLLV--------AHEVDEEHIYNLEV 347 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~--------~~~~~~~~~~~l~~ 347 (1109)
...-+|+||+++.. +..+.|.........+.+||+++....+.. ...... .+++++
T Consensus 121 ---a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~--~i~F~~ 195 (287)
T CHL00181 121 ---AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIAN--HVDFPD 195 (287)
T ss_pred ---ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCc--eEEcCC
Confidence 12348999999642 334555554444445567777775433211 112233 799999
Q ss_pred CCHHHHHHHHHHhhhc
Q 001277 348 LSNDEALQLFSMKAFK 363 (1109)
Q Consensus 348 L~~~ea~~Lf~~~af~ 363 (1109)
++.+|..+++...+-.
T Consensus 196 ~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 196 YTPEELLQIAKIMLEE 211 (287)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887743
No 159
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.60 E-value=5.9e-05 Score=80.71 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=57.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc-cccceEEeeechhhhcccCChHHHHHHHHHHHh-hccCcccc----ccccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISIW----NVDDG 280 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~~----~~~~~ 280 (1109)
....++|+|++|+|||||++.+++.+.. +|+..+|+..+.+.. .. +.++++.+...+. ...+.... -....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~e-v~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--EE-VTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--cc-HHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4567999999999999999999997754 688888877554421 12 6667666633222 11111000 01112
Q ss_pred HHHHHHH-HcCCCCceEeccCCCHH
Q 001277 281 INIIGSR-LRQKKVLLVIDDVADVE 304 (1109)
Q Consensus 281 ~~~l~~~-L~~k~~LlVLDdv~~~~ 304 (1109)
.+..... -.++++++++|++....
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHhh
Confidence 2222222 24789999999986553
No 160
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0008 Score=72.78 Aligned_cols=169 Identities=17% Similarity=0.338 Sum_probs=100.9
Q ss_pred ccccccchhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 184 LKELVGIDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
...+=|-+.++++|.+..... -..++=|.++|++|.|||-||++|+++....| +..+..
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS----- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS----- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH-----
Confidence 345567788888887765421 23456789999999999999999999776544 432211
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHHHHH---c-CCCCceEeccCCCHH----------------HHHHHHhc
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL---R-QKKVLLVIDDVADVE----------------QLQNLARK 312 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L---~-~k~~LlVLDdv~~~~----------------~~~~l~~~ 312 (1109)
.-+++.+ .++...+++.+ + +.+..|++|.++... .+-+|+..
T Consensus 220 ---ElVqKYi---------------GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q 281 (406)
T COG1222 220 ---ELVQKYI---------------GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ 281 (406)
T ss_pred ---HHHHHHh---------------ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh
Confidence 1112221 12223333332 2 568999999986532 13445555
Q ss_pred CCCCCC--CcEEEEEeCCchhhH-----hhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCC-chHHHHHHHHHHHhCC
Q 001277 313 RDWFGP--GSKIVITTRDKQLLV-----AHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGG 384 (1109)
Q Consensus 313 ~~~~~~--gs~IiiTTR~~~v~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~G 384 (1109)
++.|.+ ..+||..|...+.+. .-+.+. .++++.-+.+.-.++|.-|+-+-.-.. -++ +.+++.+.|
T Consensus 282 lDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DR--kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g 355 (406)
T COG1222 282 LDGFDPRGNVKVIMATNRPDILDPALLRPGRFDR--KIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEG 355 (406)
T ss_pred ccCCCCCCCeEEEEecCCccccChhhcCCCcccc--eeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCC
Confidence 555544 467887776443322 223444 799998888888889988875433221 222 345555665
Q ss_pred Cc
Q 001277 385 LP 386 (1109)
Q Consensus 385 lP 386 (1109)
.-
T Consensus 356 ~s 357 (406)
T COG1222 356 FS 357 (406)
T ss_pred Cc
Confidence 54
No 161
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.58 E-value=0.0014 Score=69.95 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=27.6
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
...+.++|.+|+|||+||.++++.+..+-..++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45788999999999999999999876654344444
No 162
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.58 E-value=0.001 Score=78.20 Aligned_cols=176 Identities=18% Similarity=0.131 Sum_probs=92.3
Q ss_pred cccccccchhhHHHHHhhhc--------ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc-cC
Q 001277 183 ILKELVGIDSRLEKLRFLIA--------TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK-EG 253 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-~~ 253 (1109)
...++.|.+...+.+..... .+-...+-|.++|++|.|||.+|+++++.+.-.| +..+....... .+
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vG 301 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVG 301 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccC
Confidence 34567787766665544211 1123456789999999999999999999765332 11111110000 00
Q ss_pred ChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH--------------HHHHHHhcCCCCCCC
Q 001277 254 SVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE--------------QLQNLARKRDWFGPG 319 (1109)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--------------~~~~l~~~~~~~~~g 319 (1109)
.-.. .....+...-...+++|+||+++..- .+..++..+.....+
T Consensus 302 ese~---------------------~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~ 360 (489)
T CHL00195 302 ESES---------------------RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP 360 (489)
T ss_pred hHHH---------------------HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc
Confidence 0000 01111111123478999999986431 112222222222334
Q ss_pred cEEEEEeCCchhhH-h----hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 320 SKIVITTRDKQLLV-A----HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 320 s~IiiTTR~~~v~~-~----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
.-||.||.+..... . ...+. .+.++..+.++-.++|..+..+...... .......+++.+.|.-
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~--~i~v~lP~~~eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfS 429 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDE--IFFLDLPSLEEREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFS 429 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCe--EEEeCCcCHHHHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCC
Confidence 45666776543211 1 23444 7899999999999999888754321110 0112345556665543
No 163
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.56 E-value=0.00059 Score=68.92 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=41.4
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
|....++||-+.-++++..... ..+.+-+.|.||+|+||||-+..+++++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 4456788999999998876654 34577788999999999999999998653
No 164
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.56 E-value=0.0003 Score=76.45 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=99.3
Q ss_pred cccccccchhhHHHHHhhhcccCCCe-eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHH
Q 001277 183 ILKELVGIDSRLEKLRFLIATESSDV-RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQ 261 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1109)
..+.+-+|+.++..+..++...+..+ ..|.|+|-.|.|||.+.+++++....+ .+|+..+... . ...+...
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~~ecf----t-~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNCVECF----T-YAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeehHHhc----c-HHHHHHH
Confidence 45678899999999999997655433 455899999999999999999977332 4666533222 1 5556666
Q ss_pred HHHHHh-hccCc--cc---ccccccHHHHHH--HHc--CCCCceEeccCCCHHHHHH-----HHhcCCCCCCCcEEEEEe
Q 001277 262 LLSDLL-KLADI--SI---WNVDDGINIIGS--RLR--QKKVLLVIDDVADVEQLQN-----LARKRDWFGPGSKIVITT 326 (1109)
Q Consensus 262 ll~~l~-~~~~~--~~---~~~~~~~~~l~~--~L~--~k~~LlVLDdv~~~~~~~~-----l~~~~~~~~~gs~IiiTT 326 (1109)
++.+.. ...+. .. .+..+.+..+.+ ... ++.++||||+++...+.++ +.............|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 666663 11111 00 011111222222 112 4589999999987665322 222111112223444444
Q ss_pred CCchh---hHhhCCCccceEEcCCCCHHHHHHHHHHh
Q 001277 327 RDKQL---LVAHEVDEEHIYNLEVLSNDEALQLFSMK 360 (1109)
Q Consensus 327 R~~~v---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 360 (1109)
-.... ....+.....++..+.-+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43221 11234444447888999999999998654
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.56 E-value=0.00078 Score=80.82 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=94.4
Q ss_pred ccccccccchhhHHHHHhhhc---c-------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 182 EILKELVGIDSRLEKLRFLIA---T-------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
....+++|.+...+++.+++. . +....+-+.++|++|.|||+||++++......| +..+.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~------ 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISG------ 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccH------
Confidence 345678898877766655443 1 122345688999999999999999998653322 11110
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----------------HHHHHHhcCCC
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----------------QLQNLARKRDW 315 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~ 315 (1109)
..+... ... .........+.......+.+|+|||++... .+..++...+.
T Consensus 122 ----~~~~~~----~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~ 187 (495)
T TIGR01241 122 ----SDFVEM----FVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 187 (495)
T ss_pred ----HHHHHH----Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc
Confidence 011000 000 000111222223334567899999995531 12233333322
Q ss_pred C--CCCcEEEEEeCCchhh-Hh----hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC
Q 001277 316 F--GPGSKIVITTRDKQLL-VA----HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL 385 (1109)
Q Consensus 316 ~--~~gs~IiiTTR~~~v~-~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 385 (1109)
. ..+..||.||...... .. ...+. .++++..+.++..++|..++-...... ......+++.+.|.
T Consensus 188 ~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~--~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~ 259 (495)
T TIGR01241 188 FGTNTGVIVIAATNRPDVLDPALLRPGRFDR--QVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGF 259 (495)
T ss_pred ccCCCCeEEEEecCChhhcCHHHhcCCcceE--EEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCC
Confidence 2 2344566666543311 11 12333 789999999999999988764322111 12234677777764
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.55 E-value=0.00098 Score=84.95 Aligned_cols=156 Identities=11% Similarity=0.114 Sum_probs=86.7
Q ss_pred ccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc------cceEEeeechhhhcccCCh
Q 001277 182 EILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 255 (1109)
...+.+|||+.+++++...|... ....+.++|.+|+|||++|+.++.++...+ ...+|..++..
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~-------- 239 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA-------- 239 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH--------
Confidence 34457999999999999988643 234566899999999999999999875532 12233322111
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHHc--CCCCceEeccCCCHH----------HHHHHHhcCCCCCCC-cEE
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR--QKKVLLVIDDVADVE----------QLQNLARKRDWFGPG-SKI 322 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~----------~~~~l~~~~~~~~~g-s~I 322 (1109)
+.. .. ... .+.+..+..+.+.+. +++.+|++|+++... ..+.|.+.+ ..| -++
T Consensus 240 --l~a----~~----~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~ 305 (852)
T TIGR03346 240 --LIA----GA----KYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHC 305 (852)
T ss_pred --Hhh----cc----hhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEE
Confidence 100 00 000 111112222222222 468999999986442 122333322 223 345
Q ss_pred EEEeCCchhhHhhCC-----CccceEEcCCCCHHHHHHHHHHhh
Q 001277 323 VITTRDKQLLVAHEV-----DEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 323 iiTTR~~~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
|-+|........... ..-..+.++..+.++..+++....
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 555543332110000 011268899999999999887654
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0015 Score=73.16 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=61.3
Q ss_pred CCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 001277 292 KVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM 368 (1109)
Q Consensus 292 ~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 368 (1109)
+=++|||+++.. +..+.|+..+..-.+++.+|+||.+.. +..... .....+.+.+++.+++.+.+..... .
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~-SRc~~~~~~~~~~~~~~~~L~~~~~--~--- 180 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIK-SRCQQQACPLPSNEESLQWLQQALP--E--- 180 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHH-hhceeeeCCCcCHHHHHHHHHHhcc--c---
Confidence 334567999764 456677666554456788888887764 322221 1122799999999999999876531 1
Q ss_pred chHHHHHHHHHHHhCCCchhHHHH
Q 001277 369 GEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 369 ~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
...+.+..++..++|.|+....+
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHHHH
Confidence 11244567789999999765544
No 168
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.54 E-value=0.0023 Score=66.76 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=41.4
Q ss_pred cccccccccchhhHHHHHhhhc--ccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 181 PEILKELVGIDSRLEKLRFLIA--TESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+.....++|.|.+.+.|.+-.. ..+....-|.+||..|.|||++++++.+++..+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 3456789999999988754332 122234567889999999999999999988764
No 169
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.54 E-value=6.8e-06 Score=84.39 Aligned_cols=241 Identities=23% Similarity=0.253 Sum_probs=112.9
Q ss_pred cCCcceeeccccCCc-----cccccccccCCCcEEeCCCCc----------CCccccccccccCcCcEEEecCCCCCCcc
Q 001277 573 MNDLSELFLDRTTIE-----ELPLSIQHLTGLVLLNLKDCK----------NLKSLSHTLRRLQCLKNLTLSGCSKLKKF 637 (1109)
Q Consensus 573 ~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~L~~~~----------~l~~lp~~l~~l~~L~~L~L~~~~~~~~~ 637 (1109)
+..+..++|++|.|. .+...+.+-.+|+..+++.-. ++..+...+-++++|+..+||+|.....+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 334444455544443 233334445556666555421 11122233556677777777777655555
Q ss_pred ccc----ccCCCCCcEEeccCccCcccCCc-ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCc--
Q 001277 638 PES----LGSMKDLMELFLDGTSIAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPE-- 710 (1109)
Q Consensus 638 p~~----l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-- 710 (1109)
|+. +++-..|.+|.|++|.+..+... |++ .|.+| ..|+ -..+-+.|++.....|. +...|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~nK-------Kaa~kp~Le~vicgrNR-lengs~~~ 176 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYNK-------KAADKPKLEVVICGRNR-LENGSKEL 176 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHHh-------hhccCCCceEEEeccch-hccCcHHH
Confidence 543 34455566666666655433211 110 01110 1111 12244566666665554 222221
Q ss_pred ---ccCCCCCccEEecCCCcccCC------CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCC
Q 001277 711 ---TLGQVESLEELDISGTAIRRP------PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSL 781 (1109)
Q Consensus 711 ---~l~~l~~L~~L~L~~~~i~~~------p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l 781 (1109)
.+..-.+|+++.+..|.|+.- -..+..+++|+.|+|..|..+...+ ..+...+
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS------------------~~La~al 238 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS------------------RYLADAL 238 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH------------------HHHHHHh
Confidence 233335677777777766532 1223456677777777665332111 0011123
Q ss_pred CCCCCCCEEecCCCCCCCCCccccc-----CCCCCCCEEeCCCCCCc-------ccchhh-hccCCCCceeccCC
Q 001277 782 SGLHSLSKLDLSDCGLGEGAIPNDI-----GNLCSLKQLNLSQNNFV-------TLPASI-NSLFNLGQLDLEDC 843 (1109)
Q Consensus 782 ~~l~~L~~L~Ls~~~l~~~~lp~~l-----~~l~~L~~L~Ls~n~l~-------~lp~~~-~~l~~L~~L~L~~c 843 (1109)
...+.|+.|.+.+|-++.......+ -..|+|..|.+.+|... ++|.-. ..+|-|..|.+.+|
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 3445567777777766443322211 12456666666666433 122221 33455555555554
No 170
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.51 E-value=0.00074 Score=85.79 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=40.5
Q ss_pred ccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 184 LKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...++||+.+++++...|.... ..-+.++|++|+|||++|+.++.++..
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999997432 335679999999999999999998753
No 171
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=2.7e-05 Score=95.19 Aligned_cols=155 Identities=29% Similarity=0.273 Sum_probs=100.2
Q ss_pred CCCcEEeeeccCCC-cccCCCCC-CCCCCcEEEecCCCCC-cccCcccCCCCCccEEecCCCcccCCCccccccCCCcEE
Q 001277 668 TGLQLLNLNNCSNL-VRLPSCIN-GLRSLKTLNLSGCSKL-QNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTL 744 (1109)
Q Consensus 668 ~~L~~L~L~~c~~l-~~lp~~i~-~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L 744 (1109)
.+|++|++++...+ ...|..++ .||+|++|.++|-... .++.....++++|..||+|+++++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46666666653322 11122232 4788888888874432 23444566789999999999999988 778899999999
Q ss_pred EccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCC-cc----cccCCCCCCCEEeCCC
Q 001277 745 SFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGA-IP----NDIGNLCSLKQLNLSQ 819 (1109)
Q Consensus 745 ~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~-lp----~~l~~l~~L~~L~Ls~ 819 (1109)
.+.+-..... .-...+.++++|+.||+|........ +. +.-..||+|+.||.|+
T Consensus 201 ~mrnLe~e~~---------------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 201 SMRNLEFESY---------------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccCCCCCch---------------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 8876432210 01223667889999999987654322 11 1223589999999999
Q ss_pred CCCc--ccchhhhccCCCCceeccCCc
Q 001277 820 NNFV--TLPASINSLFNLGQLDLEDCK 844 (1109)
Q Consensus 820 n~l~--~lp~~~~~l~~L~~L~L~~c~ 844 (1109)
+.+. -+...+..-++|+.+.+-+|.
T Consensus 260 Tdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 260 TDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred cchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 8777 234445556677766665543
No 172
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.51 E-value=8e-05 Score=56.04 Aligned_cols=39 Identities=36% Similarity=0.616 Sum_probs=19.2
Q ss_pred CCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccc
Q 001277 786 SLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP 826 (1109)
Q Consensus 786 ~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp 826 (1109)
+|++|+|++|++.+ +|..++.|++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCc
Confidence 45555555555532 4444555555555555555555443
No 173
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.50 E-value=0.00011 Score=72.88 Aligned_cols=65 Identities=26% Similarity=0.349 Sum_probs=57.4
Q ss_pred cEEEccccccC-ccchHHHHHHHHHhC-CCceEeeCCCCCC--CCCCcHHHHHHHHhcceEEEEecccc
Q 001277 15 DAFLSFRGEDT-RKSFTDHLYAALKNK-GIYVFKDDKELEK--GGSISPNLLEAIEESRISIIVLSKNY 79 (1109)
Q Consensus 15 dvfis~~~~D~-~~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~l~~~i~~s~~~ivv~S~~y 79 (1109)
-|||||++++. ...++..|++.|++. |+.|.+|.++... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 39999998654 457899999999999 9999999998854 78999999999999999999999655
No 174
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.00097 Score=80.83 Aligned_cols=196 Identities=17% Similarity=0.220 Sum_probs=106.3
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc--ccc-eEEee-echhhhcccC-Ch
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE--FDG-STFLA-NVREKSEKEG-SV 255 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~-~~~~~-~~~~~~~~~~-~~ 255 (1109)
|....++||.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. ... .|-.+ .++....... .+
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 445678999999999998888643 224567899999999999999999865321 100 00000 0000000000 00
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
.. +..... ..+++ +..+.+.+ .+++=++|+|+++.. ...+.|+..+....+...+|++|.+
T Consensus 91 ~e--------id~~s~---~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 91 FE--------IDGASN---TGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred ee--------eeccCc---cCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 00 000000 00001 11111211 234447889999765 3466666655544566777665544
Q ss_pred -chhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch-hHHHH
Q 001277 329 -KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL-ALTVL 392 (1109)
Q Consensus 329 -~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 392 (1109)
..+..... .....+++..++.++..+.+...+-.... .-..+....|++.++|..- |+..+
T Consensus 159 ~~kl~~tI~-SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 159 PHKVPITIL-SRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhHHHH-HhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33332211 11127889999999998888776543222 1223567788888888653 44333
No 175
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.47 E-value=0.00042 Score=66.90 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEecCCchhHHHHHHHHHHHh
Q 001277 211 MGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.47 E-value=0.00072 Score=81.53 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=43.8
Q ss_pred CcccccccccchhhHHHHHhhhccc---CCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 180 KPEILKELVGIDSRLEKLRFLIATE---SSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.|....+++|-+..++++..++... ....+++.|+|++|.||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3556778999999999999888743 23456899999999999999999997554
No 177
>PRK12377 putative replication protein; Provisional
Probab=97.46 E-value=0.0021 Score=68.71 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=28.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...+.++|.+|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998876544445553
No 178
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.46 E-value=0.00011 Score=55.28 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=35.4
Q ss_pred CCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCC
Q 001277 810 CSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQL 852 (1109)
Q Consensus 810 ~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~l 852 (1109)
++|++|+|++|+++.+|..+.+|++|+.|++++|+ +.++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 57999999999999999889999999999999994 6666654
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.45 E-value=0.00072 Score=85.78 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=41.7
Q ss_pred ccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 182 EILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+.+|||+.+++++...|... ...-+.++|.+|+|||++|+.++.++..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 34467999999999999988643 2345669999999999999999998754
No 180
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.40 E-value=0.00032 Score=78.70 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=60.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEeeechhhhcccCChHHHHHHHHHHHh-hccCccccc----cccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISIWN----VDDG 280 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~~~----~~~~ 280 (1109)
....++|+|++|.|||||++.+++.+... |+..+|+..+.+... .+.++++.++..+. ...+..... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~---EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPE---EVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCc---cHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 45679999999999999999999987665 888888876544221 26777777754443 111111000 0111
Q ss_pred HHHHHHH-HcCCCCceEeccCCCHHH
Q 001277 281 INIIGSR-LRQKKVLLVIDDVADVEQ 305 (1109)
Q Consensus 281 ~~~l~~~-L~~k~~LlVLDdv~~~~~ 305 (1109)
.+..+.. -.+++++|++|++.....
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHHHH
Confidence 1112222 257999999999976544
No 181
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0071 Score=62.95 Aligned_cols=179 Identities=19% Similarity=0.212 Sum_probs=100.8
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIG 285 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1109)
.+.+++.++|.-|.|||.+++++.....+.--..+.+. ..... ...+...+..++..... +........+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s-~~~~~~ai~~~l~~~p~---~~~~~~~e~~~ 119 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLS-DATLLEAIVADLESQPK---VNVNAVLEQID 119 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccchh-HHHHHHHHHHHhccCcc---chhHHHHHHHH
Confidence 34569999999999999999955554432211122221 11111 44455556666553111 34444444444
Q ss_pred HHH-----cCCC-CceEeccCCCH--HHHHHHHhc--C-CCCCCCcEEEEEeCCc-------hhhHhhCCCccce-EEcC
Q 001277 286 SRL-----RQKK-VLLVIDDVADV--EQLQNLARK--R-DWFGPGSKIVITTRDK-------QLLVAHEVDEEHI-YNLE 346 (1109)
Q Consensus 286 ~~L-----~~k~-~LlVLDdv~~~--~~~~~l~~~--~-~~~~~gs~IiiTTR~~-------~v~~~~~~~~~~~-~~l~ 346 (1109)
+.| ++++ +.+++|+..+. ++++.+.-. . ......-+|+..-..+ .+....+ ....+ |++.
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~-~R~~ir~~l~ 198 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELE-QRIDIRIELP 198 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhh-heEEEEEecC
Confidence 444 3566 99999998654 334443321 1 1111112233322111 1111111 11114 9999
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCch-HHHHHHHHHHHhCCCchhHHHHhh
Q 001277 347 VLSNDEALQLFSMKAFKTRQPMGE-YVELSKRVLKYAGGLPLALTVLGS 394 (1109)
Q Consensus 347 ~L~~~ea~~Lf~~~af~~~~~~~~-~~~~~~~i~~~~~GlPLal~~l~~ 394 (1109)
|++.++...++.++.-+...+.+- ..+....|.....|.|.++..++.
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999999999988665444333 346778899999999999987764
No 182
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.0034 Score=70.38 Aligned_cols=174 Identities=16% Similarity=0.203 Sum_probs=103.8
Q ss_pred cccccccchhhHHHHHhhhcc--cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccc-e-EEeeechhhhcccCChHHH
Q 001277 183 ILKELVGIDSRLEKLRFLIAT--ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDG-S-TFLANVREKSEKEGSVVSL 258 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-~-~~~~~~~~~~~~~~~~~~l 258 (1109)
.+..++||+.++..+..++.. +.+..+-+-|.|-+|.|||.+...++......... . +++. ... -.....+
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in-c~s----l~~~~ai 222 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN-CTS----LTEASAI 222 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe-ecc----ccchHHH
Confidence 457899999999999998873 34556788899999999999999999877655443 2 3332 211 1114556
Q ss_pred HHHHHHHHhhccCcccccccccHHHHHHHHcC--CCCceEeccCCCHHH--HHHHHhcCCCC-CCCcEEEEEeCCc----
Q 001277 259 QKQLLSDLLKLADISIWNVDDGINIIGSRLRQ--KKVLLVIDDVADVEQ--LQNLARKRDWF-GPGSKIVITTRDK---- 329 (1109)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~IiiTTR~~---- 329 (1109)
...++..+....... ....+....+.....+ +.+|+|+|.+|.... -+.+...+.|- -+++|+|+.---.
T Consensus 223 F~kI~~~~~q~~~s~-~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSP-GTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHhcCC-chhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 666666664222221 1112233444444443 368999999876542 11222222222 2566665432211
Q ss_pred --hhhHhhC---CCccceEEcCCCCHHHHHHHHHHhhh
Q 001277 330 --QLLVAHE---VDEEHIYNLEVLSNDEALQLFSMKAF 362 (1109)
Q Consensus 330 --~v~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af 362 (1109)
..+.... .-....+..++.+.++..++|..+.-
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 1111111 11233788999999999999999874
No 183
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.36 E-value=0.045 Score=61.92 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=66.7
Q ss_pred CCCceEeccCCCH-----------HHHHHHHhcCCCCCCCcEEEEEeCCchh----hHhhCCCccceEEcCCCCHHHHHH
Q 001277 291 KKVLLVIDDVADV-----------EQLQNLARKRDWFGPGSKIVITTRDKQL----LVAHEVDEEHIYNLEVLSNDEALQ 355 (1109)
Q Consensus 291 k~~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v----~~~~~~~~~~~~~l~~L~~~ea~~ 355 (1109)
++-+|||||+... .+|...+.. .+=.+||++|-+... ..+........+.+...+.+-|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 4679999998432 123332222 355789998877543 333333333478999999999999
Q ss_pred HHHHhhhcCCCC-------------C-----chHHHHHHHHHHHhCCCchhHHHHhhhcC
Q 001277 356 LFSMKAFKTRQP-------------M-----GEYVELSKRVLKYAGGLPLALTVLGSFLN 397 (1109)
Q Consensus 356 Lf~~~af~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~l~~~L~ 397 (1109)
+...+.-..... . ..........++.+||=-.-|..+++.++
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999998543110 0 12334456777888888888888887775
No 184
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.35 E-value=0.0008 Score=83.32 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=84.7
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc-----cceEEeeechhhhcccCChHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF-----DGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
+.++||+.++.++...|.... ..-+.++|.+|+|||++|+.+++++...- ....++.. . ..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l--------~-~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL--------D-IG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec--------c-HH---
Confidence 468999999999999887532 23456899999999999999998764321 11222210 0 11
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHH-cCCCCceEeccCCCH----------HHHH-HHHhcCCCCCCCcEEEEEeC
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRL-RQKKVLLVIDDVADV----------EQLQ-NLARKRDWFGPGSKIVITTR 327 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~~~-~l~~~~~~~~~gs~IiiTTR 327 (1109)
.++. . ... ..+.+.....+.+.+ +.++.+|+||+++.. .+.. .+.+.+. ...-++|-+|.
T Consensus 252 -~lla---G-~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt 323 (758)
T PRK11034 252 -SLLA---G-TKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_pred -HHhc---c-cch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCC
Confidence 1110 0 000 012222222333333 346789999999643 1222 2333321 12344555554
Q ss_pred CchhhHhhCC-----CccceEEcCCCCHHHHHHHHHHhh
Q 001277 328 DKQLLVAHEV-----DEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 328 ~~~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
.......... ..-..+++++++.+++.+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3332111000 011279999999999999998654
No 185
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.35 E-value=0.0027 Score=70.04 Aligned_cols=152 Identities=21% Similarity=0.278 Sum_probs=81.1
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhh-cccCChHHHHHHHHHHHhhccCcccccccccHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKS-EKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 284 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l 284 (1109)
..++.++|||++|.|||.+|++++..+...| +..+..+.. .-.+.-....++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A------------------ 203 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREA------------------ 203 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHH------------------
Confidence 3568899999999999999999999876543 222222211 11121222222222211
Q ss_pred HHH--HcCCCCceEeccCCCH------------HHH--HHHHhcCC----------C----CCCCcEEEEEeCCchhhHh
Q 001277 285 GSR--LRQKKVLLVIDDVADV------------EQL--QNLARKRD----------W----FGPGSKIVITTRDKQLLVA 334 (1109)
Q Consensus 285 ~~~--L~~k~~LlVLDdv~~~------------~~~--~~l~~~~~----------~----~~~gs~IiiTTR~~~v~~~ 334 (1109)
.+. -++++++|+||++|.. .++ ..|+...+ | ..++..||+||.+...+..
T Consensus 204 ~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDp 283 (413)
T PLN00020 204 ADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYA 283 (413)
T ss_pred HHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCH
Confidence 111 1468899999998532 111 22332111 1 2456778888876653322
Q ss_pred h-----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch
Q 001277 335 H-----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL 387 (1109)
Q Consensus 335 ~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 387 (1109)
. ..+. .| ..-+.++-.+++..+.-+ .... .....++++...|-|+
T Consensus 284 ALlRpGRfDk--~i--~lPd~e~R~eIL~~~~r~-~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 284 PLIRDGRMEK--FY--WAPTREDRIGVVHGIFRD-DGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred hHcCCCCCCc--ee--CCCCHHHHHHHHHHHhcc-CCCC---HHHHHHHHHcCCCCCc
Confidence 1 2222 23 345667777777655432 2221 2344566666666654
No 186
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0079 Score=67.10 Aligned_cols=194 Identities=15% Similarity=0.109 Sum_probs=106.5
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc---------------ccceEEeeechhhh
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE---------------FDGSTFLANVREKS 249 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------f~~~~~~~~~~~~~ 249 (1109)
.+++|.+...+.+...+..+ .-.+...++|+.|+||+++|.++++.+-.. ++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 46889999999999888643 224788999999999999999998865321 1222232210000
Q ss_pred cccCChHHHHHHHHHHHh-hccCcccccccccHHHHHHHHc-----CCCCceEeccCCCHH--HHHHHHhcCCCCCCCcE
Q 001277 250 EKEGSVVSLQKQLLSDLL-KLADISIWNVDDGINIIGSRLR-----QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSK 321 (1109)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~-~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~ 321 (1109)
+... .. ..-+.... .......-.++ .+..+.+.+. +++=++|+|+++... ..+.|+..+..-+ .+.
T Consensus 82 ~g~~-~~---~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QGKL-IT---ASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred cccc-cc---hhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 0000 00 00000000 00000000111 1223333332 456688999997653 4566665554334 445
Q ss_pred EEEEeCC-chhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 322 IVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 322 IiiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
+|++|.+ ..+...... ....+++.++++++..+.+....... ........++..++|.|..+..+
T Consensus 156 fILi~~~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHHH
Confidence 6555544 344333221 12389999999999999998764211 11112367899999999765443
No 187
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=3e-05 Score=79.83 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=25.6
Q ss_pred CCCCCCCcEEEecCCCCCcccCccc----CCCCCccEEecCCCcccC
Q 001277 688 INGLRSLKTLNLSGCSKLQNVPETL----GQVESLEELDISGTAIRR 730 (1109)
Q Consensus 688 i~~l~~L~~L~Ls~c~~l~~lp~~l----~~l~~L~~L~L~~~~i~~ 730 (1109)
+.+|+.|+..+||.|.....+|+.+ ..-+.|.+|.+++|++..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 4456677777777766655555443 344556666666665543
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.30 E-value=0.0017 Score=81.86 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=93.2
Q ss_pred cccccccchhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 183 ILKELVGIDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
...++.|.+..+++|.+.+... -...+-|.++|++|.|||+||+++++.....| +.+. .......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 3456889999999887776421 12346788999999999999999998775433 1121 1110000
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH-------------HHHHHHhcCCCC-C
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE-------------QLQNLARKRDWF-G 317 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~-~ 317 (1109)
.. . .........+.......+.+|+||+++... ....|...+... .
T Consensus 252 ~~--g------------------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~ 311 (733)
T TIGR01243 252 YY--G------------------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG 311 (733)
T ss_pred cc--c------------------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc
Confidence 00 0 000011112222234567899999985431 123333333222 2
Q ss_pred CCcEEEE-EeCCch-hhHhh----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 318 PGSKIVI-TTRDKQ-LLVAH----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 318 ~gs~Iii-TTR~~~-v~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
.+..++| ||.... +.... ..+. .+.+...+.++..+++..+.-.... .+ ......+++.+.|.-
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~--~i~i~~P~~~~R~~Il~~~~~~~~l-~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDR--EIVIRVPDKRARKEILKVHTRNMPL-AE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccE--EEEeCCcCHHHHHHHHHHHhcCCCC-cc--ccCHHHHHHhCCCCC
Confidence 3444455 444332 11111 1222 6888888999988888855422111 11 122456777777754
No 189
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0074 Score=68.40 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=81.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
....+.|||..|.|||.|++++.+......+...++... ...........+.. ......++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~---------se~f~~~~v~a~~~----------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT---------SEDFTNDFVKALRD----------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc---------HHHHHHHHHHHHHh----------hhHHHHHH
Confidence 467899999999999999999999887776633332211 12222222222221 12344555
Q ss_pred HHcCCCCceEeccCCCHH----HHHHHHhcCCC-CCCCcEEEEEeCCc---------hhhHhhCCCccceEEcCCCCHHH
Q 001277 287 RLRQKKVLLVIDDVADVE----QLQNLARKRDW-FGPGSKIVITTRDK---------QLLVAHEVDEEHIYNLEVLSNDE 352 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~e 352 (1109)
.. .-=++++||++-.. ..+++...++. ...|..||+|++.. .+....... .++++.+++.+.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G--l~~~I~~Pd~e~ 248 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG--LVVEIEPPDDET 248 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce--eEEeeCCCCHHH
Confidence 55 33488899985422 12333333221 13455899999643 222222333 389999999999
Q ss_pred HHHHHHHhhhc
Q 001277 353 ALQLFSMKAFK 363 (1109)
Q Consensus 353 a~~Lf~~~af~ 363 (1109)
..+.+.+++..
T Consensus 249 r~aiL~kka~~ 259 (408)
T COG0593 249 RLAILRKKAED 259 (408)
T ss_pred HHHHHHHHHHh
Confidence 99999987744
No 190
>PRK08181 transposase; Validated
Probab=97.25 E-value=0.0009 Score=72.51 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=27.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
.-+.++|++|+|||.||.++.+....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999987765533345553
No 191
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00012 Score=89.57 Aligned_cols=135 Identities=24% Similarity=0.280 Sum_probs=90.5
Q ss_pred ccCCCcEEeCCCCcCCc-ccccccc-ccCcCcEEEecCCCC-CCcccccccCCCCCcEEeccCccCcccCCcccCCCCCc
Q 001277 595 HLTGLVLLNLKDCKNLK-SLSHTLR-RLQCLKNLTLSGCSK-LKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQ 671 (1109)
Q Consensus 595 ~l~~L~~L~L~~~~~l~-~lp~~l~-~l~~L~~L~L~~~~~-~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 671 (1109)
.-.+|++|++++...+. ..|..++ .||+|+.|.++|-.. ...+.....++++|..||+++++++.+ ..+++|++|+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 34578888887754332 2222233 478999999987432 233556667899999999999999988 6789999999
Q ss_pred EEeeeccCCCc-ccCCCCCCCCCCcEEEecCCCCCccc--C----cccCCCCCccEEecCCCcccC
Q 001277 672 LLNLNNCSNLV-RLPSCINGLRSLKTLNLSGCSKLQNV--P----ETLGQVESLEELDISGTAIRR 730 (1109)
Q Consensus 672 ~L~L~~c~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~l--p----~~l~~l~~L~~L~L~~~~i~~ 730 (1109)
.|.+.+-.... .--..+.+|++|+.||+|.-.....- . +--..+++|+.||.|++.+..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99887644321 11123568999999999876543321 1 112347788888888877664
No 192
>PRK06526 transposase; Provisional
Probab=97.19 E-value=0.00081 Score=72.47 Aligned_cols=28 Identities=25% Similarity=0.062 Sum_probs=23.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.+-+.|+|++|+|||+||.++......+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3568999999999999999998866543
No 193
>PRK10536 hypothetical protein; Provisional
Probab=97.18 E-value=0.0018 Score=68.40 Aligned_cols=136 Identities=11% Similarity=0.142 Sum_probs=73.7
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHH-H-hccccceEEeeechhhhc----ccCChHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDL-I-SHEFDGSTFLANVREKSE----KEGSVVSL 258 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~~l 258 (1109)
..+.++......+..++.. ..+|.+.|.+|.|||+||.+++.. + ...|...+...-.-...+ -++++.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4567788888887777753 248999999999999999998873 4 344543333321111111 12323322
Q ss_pred HHHHHHHHh----hccCcccccccc--------cHHHHHHHHcCCC---CceEeccCCCH--HHHHHHHhcCCCCCCCcE
Q 001277 259 QKQLLSDLL----KLADISIWNVDD--------GINIIGSRLRQKK---VLLVIDDVADV--EQLQNLARKRDWFGPGSK 321 (1109)
Q Consensus 259 ~~~ll~~l~----~~~~~~~~~~~~--------~~~~l~~~L~~k~---~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~ 321 (1109)
....+.-+. .-.+. ...+. ..-.-..+++++. -+||+|++.+. .+...++.. .+.+|+
T Consensus 131 ~~p~~~pi~D~L~~~~~~--~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk 205 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGA--SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHhCh--HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCE
Confidence 222222211 10000 00000 0000123455654 49999999765 445555543 479999
Q ss_pred EEEEeCCc
Q 001277 322 IVITTRDK 329 (1109)
Q Consensus 322 IiiTTR~~ 329 (1109)
||+|--..
T Consensus 206 ~v~~GD~~ 213 (262)
T PRK10536 206 VIVNGDIT 213 (262)
T ss_pred EEEeCChh
Confidence 99987643
No 194
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0061 Score=71.98 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=94.0
Q ss_pred cccccchhhHHHHHhhhcc----cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIAT----ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
.+-+|.++-.++|.+.|.. ..-...+++++|++|+|||.|++.++..+...|- ++-+-.++..++-.+ ..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv-R~sLGGvrDEAEIRG----HR- 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV-RISLGGVRDEAEIRG----HR- 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE-EEecCccccHHHhcc----cc-
Confidence 4678999999999998873 2334579999999999999999999999988774 333334444433222 00
Q ss_pred HHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHHH------HHHHHhcCCC-----CC--------CCcE
Q 001277 261 QLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQ------LQNLARKRDW-----FG--------PGSK 321 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~------~~~l~~~~~~-----~~--------~gs~ 321 (1109)
......-+...++.++ ..+.+.-|++||.+|.... ..+|+..++. |. .=|.
T Consensus 397 ---------RTYIGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 397 ---------RTYIGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ---------ccccccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 0000011112222222 2345678999999976431 2223222211 10 0134
Q ss_pred E-EEEeCCchh-hHhhCCCccceEEcCCCCHHHHHHHHHHhhh
Q 001277 322 I-VITTRDKQL-LVAHEVDEEHIYNLEVLSNDEALQLFSMKAF 362 (1109)
Q Consensus 322 I-iiTTR~~~v-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 362 (1109)
| .|||-+.-- ....-.+.-.++++.+-+++|-.++-.++..
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 4 455554210 0111112222899999999999998887763
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=97.16 E-value=0.0013 Score=71.41 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=22.6
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+.|+|++|+|||+||.++......
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999876543
No 196
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0024 Score=67.90 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=49.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh----ccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS----HEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINI 283 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 283 (1109)
-|+|.++|++|.|||+|+++++++++ +.|..+..+.. . -..+....+++-+ ..+....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi-----n----shsLFSKWFsESg-------KlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI-----N----SHSLFSKWFSESG-------KLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE-----e----hhHHHHHHHhhhh-------hHHHHHHHH
Confidence 48999999999999999999999653 44554444431 0 1112222222221 233344556
Q ss_pred HHHHHcCCC--CceEeccCCCHH
Q 001277 284 IGSRLRQKK--VLLVIDDVADVE 304 (1109)
Q Consensus 284 l~~~L~~k~--~LlVLDdv~~~~ 304 (1109)
|.+.+..+. +.+.+|.|+...
T Consensus 241 I~ELv~d~~~lVfvLIDEVESLa 263 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVESLA 263 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHHHH
Confidence 666666554 556789886643
No 197
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.08 E-value=0.0056 Score=77.21 Aligned_cols=173 Identities=14% Similarity=0.185 Sum_probs=94.1
Q ss_pred ccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 184 LKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
..++.|.+...+.|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.....+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~----- 522 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPE----- 522 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHH-----
Confidence 45678888887777665531 112345688999999999999999999765433 1111100
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHH-HHHcCCCCceEeccCCCHH--------------HHHHHHhcCCCC-
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIG-SRLRQKKVLLVIDDVADVE--------------QLQNLARKRDWF- 316 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVLDdv~~~~--------------~~~~l~~~~~~~- 316 (1109)
++.... ...+..+..+. ..-...+.+|+||+++... ....++..++..
T Consensus 523 ---------l~~~~v-------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 523 ---------ILSKWV-------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred ---------Hhhccc-------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc
Confidence 111000 01111111221 2223567899999986431 133444443322
Q ss_pred -CCCcEEEEEeCCchhhHh-h----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 317 -GPGSKIVITTRDKQLLVA-H----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 317 -~~gs~IiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
..+..||.||........ . +.+. .+.++..+.++..++|..+.-+..... + .....+++.+.|.-
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~--~i~v~~Pd~~~R~~i~~~~~~~~~~~~-~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDR--LILVPPPDEEARKEIFKIHTRSMPLAE-D--VDLEELAEMTEGYT 657 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccce--EEEeCCcCHHHHHHHHHHHhcCCCCCc-c--CCHHHHHHHcCCCC
Confidence 234456667755443221 1 2333 789999999999999976653221111 1 11345566666643
No 198
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.07 E-value=0.00077 Score=68.62 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=25.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..-+.++|.+|+|||.||.++.+....+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356899999999999999999986655323345553
No 199
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.014 Score=65.01 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=62.7
Q ss_pred CCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCC
Q 001277 290 QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 366 (1109)
Q Consensus 290 ~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 366 (1109)
+++=++|||+++... ..+.|+..+..-.+++.+|++|.+.. ++..... ....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-RCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-RCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-hheEeeCCCcCHHHHHHHHHHcC----C
Confidence 345589999998764 46666666555567888888777543 3322211 12278999999999999886531 1
Q ss_pred CCchHHHHHHHHHHHhCCCchhHHHHh
Q 001277 367 PMGEYVELSKRVLKYAGGLPLALTVLG 393 (1109)
Q Consensus 367 ~~~~~~~~~~~i~~~~~GlPLal~~l~ 393 (1109)
..+.+..++..++|.|+....+.
T Consensus 187 ----~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 ----SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----ChHHHHHHHHHcCCCHHHHHHHh
Confidence 12336678999999998665543
No 200
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.05 E-value=0.0048 Score=71.37 Aligned_cols=136 Identities=20% Similarity=0.161 Sum_probs=81.8
Q ss_pred hhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccC
Q 001277 192 SRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLAD 271 (1109)
Q Consensus 192 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 271 (1109)
.-+.++.+.+... ..++.|.|+-++||||+++.+.....+. .+++.......... .+ .+.+...
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~----~l-~d~~~~~----- 87 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRI----EL-LDLLRAY----- 87 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchh----hH-HHHHHHH-----
Confidence 3344455444322 2299999999999999997766655444 34443111111110 01 1111111
Q ss_pred cccccccccHHHHHHHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhhHhhC----CCccceEEcCC
Q 001277 272 ISIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHE----VDEEHIYNLEV 347 (1109)
Q Consensus 272 ~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~----~~~~~~~~l~~ 347 (1109)
...-..++.+|+||.|.....|+..+..+...++. +|+||+-+..+..... .+....+++-|
T Consensus 88 -------------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 88 -------------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred -------------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 11111178899999999999998887776655666 8999988765432211 22234799999
Q ss_pred CCHHHHHHHH
Q 001277 348 LSNDEALQLF 357 (1109)
Q Consensus 348 L~~~ea~~Lf 357 (1109)
|+-.|-..+-
T Consensus 154 lSF~Efl~~~ 163 (398)
T COG1373 154 LSFREFLKLK 163 (398)
T ss_pred CCHHHHHhhc
Confidence 9999987653
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.02 E-value=0.0017 Score=63.21 Aligned_cols=28 Identities=36% Similarity=0.293 Sum_probs=24.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
+.+.|+|++|+||||+|+.++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5789999999999999999998776654
No 202
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.01 E-value=5.7e-05 Score=69.96 Aligned_cols=60 Identities=25% Similarity=0.470 Sum_probs=50.9
Q ss_pred CCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcC
Q 001277 784 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 784 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~ 845 (1109)
++.++.|+|++|.+.+ +|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..++..
T Consensus 76 f~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 76 FPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 4578888889998865 88889999999999999999999998888888888888877643
No 203
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.00 E-value=0.0082 Score=75.92 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=40.4
Q ss_pred cccccchhhHHHHHhhhcc----cCCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 185 KELVGIDSRLEKLRFLIAT----ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
...+|.+.-.++|.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4578999888888776642 222345799999999999999999999876554
No 204
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.015 Score=65.77 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=85.7
Q ss_pred ccccc-chhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc--ccceEEeeechhhhcccCChHHHHHH
Q 001277 185 KELVG-IDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE--FDGSTFLANVREKSEKEGSVVSLQKQ 261 (1109)
Q Consensus 185 ~~~vG-r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1109)
..++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.+++.+-.. ..... .+ .-...+.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~-----------cg-~C~~c~~ 71 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP-----------CG-TCTNCKR 71 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-----------CC-cCHHHHH
Confidence 34566 555667777776532 234567899999999999999998865321 10000 00 0000000
Q ss_pred HHHH----Hh-hccCcccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 262 LLSD----LL-KLADISIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 262 ll~~----l~-~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
+... +. -..+......++.. .+.+.+ .+++=++|+|+++.. +..+.|+..+..-++++.+|++|.+.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 0000 00 00000000111111 111111 234457899998765 34667777666556788888888764
Q ss_pred h-hhHhhCCCccceEEcCCCCHHHHHHHHHHh
Q 001277 330 Q-LLVAHEVDEEHIYNLEVLSNDEALQLFSMK 360 (1109)
Q Consensus 330 ~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 360 (1109)
. +..... .....+++.+++.++..+.+...
T Consensus 151 ~~ll~TIr-SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 151 HQILPTIL-SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhCcHHHH-hhceeeeCCCCCHHHHHHHHHHc
Confidence 3 222221 11237999999999998888653
No 205
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.95 E-value=0.0029 Score=70.70 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=28.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..+.++|.+|+|||+||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999997765533445554
No 206
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.028 Score=62.63 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=61.8
Q ss_pred CCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCC
Q 001277 290 QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 366 (1109)
Q Consensus 290 ~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 366 (1109)
+++=++|+|+++... ....|+..+..-.+++.+|++|.+.. ++..... ....+.+.+++++++.+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC~~~~~~~~~~~~~~~~L~~~~~~--- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RCQTWLIHPPEEQQALDWLQAQSSA--- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hceEEeCCCCCHHHHHHHHHHHhcc---
Confidence 445578899998754 46777776665567888888887653 3322211 1227999999999999998776411
Q ss_pred CCchHHHHHHHHHHHhCCCchhH
Q 001277 367 PMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 367 ~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
+ ...+...+..++|.|+..
T Consensus 182 --~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 --E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred --C--hHHHHHHHHHcCCCHHHH
Confidence 1 123566788999999643
No 207
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.91 E-value=0.022 Score=61.66 Aligned_cols=201 Identities=16% Similarity=0.141 Sum_probs=106.1
Q ss_pred cccccch---hhHHHHHhhhccc-CCCeeEEEEEecCCchhHHHHHHHHHHHhccccce-----EEeeechhhhcccCCh
Q 001277 185 KELVGID---SRLEKLRFLIATE-SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGS-----TFLANVREKSEKEGSV 255 (1109)
Q Consensus 185 ~~~vGr~---~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-----~~~~~~~~~~~~~~~~ 255 (1109)
+.+||-. .-+++|..++... ....+-+.|+|.+|+|||++++.+.+.....++.. +++.. ....++ .
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq---~P~~p~-~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ---MPPEPD-E 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe---cCCCCC-h
Confidence 3455543 3345666666633 33556799999999999999999988654444321 22211 222333 7
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHHcC-CCCceEeccCCCH-----HHHHHHHhcCCCCC---CCcEEEEEe
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ-KKVLLVIDDVADV-----EQLQNLARKRDWFG---PGSKIVITT 326 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~-----~~~~~l~~~~~~~~---~gs~IiiTT 326 (1109)
..+...++..+....... .........+...++. +-=+||+|++.+. .+-..++..+...+ .=+-|.+-|
T Consensus 110 ~~~Y~~IL~~lgaP~~~~-~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPR-DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHHHHHHHHHhCcccCCC-CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 778888888887332221 3334444455555553 3448999999663 12222222211112 234556666
Q ss_pred CCchhhHhhC---CCccceEEcCCCCHH-HHHHHHHHhhhc---CCCCCchHHHHHHHHHHHhCCCchhHH
Q 001277 327 RDKQLLVAHE---VDEEHIYNLEVLSND-EALQLFSMKAFK---TRQPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 327 R~~~v~~~~~---~~~~~~~~l~~L~~~-ea~~Lf~~~af~---~~~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
++..-+-... .....++.++....+ |...|+...... .....-...++++.|...++|+.=-+.
T Consensus 189 ~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 189 REAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 6432111100 000115666666544 444444332211 111112346788999999999875443
No 208
>PRK06921 hypothetical protein; Provisional
Probab=96.88 E-value=0.0023 Score=69.67 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEee
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLA 243 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 243 (1109)
...+.++|.+|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987765 33345554
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.022 Score=64.08 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=62.1
Q ss_pred CCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCC
Q 001277 290 QKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQ 366 (1109)
Q Consensus 290 ~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 366 (1109)
+++=++|||+++... ..+.|+..+..-.+++.+|++|.+.+ ++...... ...+.+.+++.+++.+.+.....
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR-Cq~~~~~~~~~~~~~~~L~~~~~---- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR-CRLHYLAPPPEQYALTWLSREVT---- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc-cccccCCCCCHHHHHHHHHHccC----
Confidence 455588999998653 46777776665567888888877654 43332211 12689999999999998865421
Q ss_pred CCchHHHHHHHHHHHhCCCchhHH
Q 001277 367 PMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 367 ~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
. ..+.+..++..++|.|....
T Consensus 182 -~--~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 -M--SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred -C--CHHHHHHHHHHcCCCHHHHH
Confidence 1 12346788999999996443
No 210
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.85 E-value=0.0016 Score=64.89 Aligned_cols=60 Identities=27% Similarity=0.322 Sum_probs=27.6
Q ss_pred CCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcc
Q 001277 598 GLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAE 659 (1109)
Q Consensus 598 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~ 659 (1109)
....+||++|. +..++. |..++.|.+|.|+.|.....-|..-..+++|..|.|.+|+|.+
T Consensus 43 ~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred ccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence 34445555432 233332 4445555555555544444444433344445555555554443
No 211
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.82 E-value=0.025 Score=71.96 Aligned_cols=51 Identities=18% Similarity=0.308 Sum_probs=38.9
Q ss_pred ccccccchhhHHHHHhhhccc------CC-CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 184 LKELVGIDSRLEKLRFLIATE------SS-DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...++|.+..++.+...+... .+ ...++.++|+.|+|||++|+++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 356899999998887776521 11 2247889999999999999999986643
No 212
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.012 Score=60.76 Aligned_cols=172 Identities=17% Similarity=0.244 Sum_probs=98.1
Q ss_pred ccccccchhhHHH---HHhhhcc----cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChH
Q 001277 184 LKELVGIDSRLEK---LRFLIAT----ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVV 256 (1109)
Q Consensus 184 ~~~~vGr~~~l~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 256 (1109)
.++.||.+....+ |.+.|.. +...++-|..+|++|.|||.+|+++++...-.| +. +. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-vk--------a- 184 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-VK--------A- 184 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-ec--------h-
Confidence 4577888766554 4455542 233578899999999999999999999665332 21 00 0
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHH-cCCCCceEeccCCCH--------------HHHHHHHhcCCCC--CCC
Q 001277 257 SLQKQLLSDLLKLADISIWNVDDGINIIGSRL-RQKKVLLVIDDVADV--------------EQLQNLARKRDWF--GPG 319 (1109)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--------------~~~~~l~~~~~~~--~~g 319 (1109)
.+-+-... .+....+..+.++. +..++.+.||.++-. +..++|+..++.. +.|
T Consensus 185 --t~liGehV--------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 185 --TELIGEHV--------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred --HHHHHHHh--------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc
Confidence 00011111 11122233333333 246899999988553 2356666655533 356
Q ss_pred cEEEEEeCCchhhHh---hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC
Q 001277 320 SKIVITTRDKQLLVA---HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL 385 (1109)
Q Consensus 320 s~IiiTTR~~~v~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 385 (1109)
...|-.|.+..++.. ..... .++..--+++|..+++..++-.-.-+.+. ..+.++.+.+|.
T Consensus 255 VvtIaaTN~p~~LD~aiRsRFEe--EIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 255 VVTIAATNRPELLDPAIRSRFEE--EIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred eEEEeecCChhhcCHHHHhhhhh--eeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 666666665544322 22333 67888889999999998887432222221 134555555554
No 213
>PHA00729 NTP-binding motif containing protein
Probab=96.78 E-value=0.0033 Score=65.43 Aligned_cols=27 Identities=30% Similarity=0.203 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+...|.|+|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998764
No 214
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.76 E-value=0.02 Score=72.03 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=38.4
Q ss_pred ccccccchhhHHHHHhhhccc------CC-CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 184 LKELVGIDSRLEKLRFLIATE------SS-DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...++|.+..++.+...+... .. ...++.++|++|+|||+||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 356889999888887776521 11 234678999999999999999998773
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.015 Score=70.94 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=74.5
Q ss_pred ccccccchhhHHHHHhhhcc-------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChH
Q 001277 184 LKELVGIDSRLEKLRFLIAT-------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVV 256 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 256 (1109)
....+|.+..+..+.+.+.. ...........|+.|+|||.||++++..+-..=+..+-+ +..+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy-------- 560 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEY-------- 560 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHH--------
Confidence 35789999999988777652 223356777899999999999999999774322222222 23332
Q ss_pred HHHHHHHHHHh-hccCcccccccccHHHHHHHHcCCCC-ceEeccCCC--HHHHHHHHhcCCCC
Q 001277 257 SLQKQLLSDLL-KLADISIWNVDDGINIIGSRLRQKKV-LLVIDDVAD--VEQLQNLARKRDWF 316 (1109)
Q Consensus 257 ~l~~~ll~~l~-~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~--~~~~~~l~~~~~~~ 316 (1109)
..+...+.+. ..++.. .-++ -..+-+..++++| +|.||+|+. ++.++-|+..++.+
T Consensus 561 -~EkHsVSrLIGaPPGYV--Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 561 -MEKHSVSRLIGAPPGYV--GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred -HHHHHHHHHhCCCCCCc--eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2233344544 222221 1111 3345566778888 888999964 56677777766543
No 216
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.70 E-value=0.024 Score=71.04 Aligned_cols=159 Identities=15% Similarity=0.188 Sum_probs=86.4
Q ss_pred cccccchhhHHHHHhhhcc----cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIAT----ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
...+|.+.-.++|.+++.. +.....++.++|++|+||||+|+.++..+...|-... +..++. ..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~~d-------~~---- 389 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGVRD-------EA---- 389 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCCCC-------HH----
Confidence 4589999999999888763 1234568999999999999999999987765442211 111111 10
Q ss_pred HHHHHHhhcc-CcccccccccHHHHHHHHcCCCCceEeccCCCHHH------HHHHHhcCCCC--------------C-C
Q 001277 261 QLLSDLLKLA-DISIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQ------LQNLARKRDWF--------------G-P 318 (1109)
Q Consensus 261 ~ll~~l~~~~-~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~------~~~l~~~~~~~--------------~-~ 318 (1109)
++.... .............+.. .....-+|+||.++.... ...|...++.. . .
T Consensus 390 ----~i~g~~~~~~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 390 ----EIRGHRRTYIGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred ----HhccchhccCCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 111000 0000111112222222 122345789999965432 24444433210 1 2
Q ss_pred CcEEEEEeCCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 319 GSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 319 gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
...+|.|+....+.... .+.-.++++.+++.+|-.++..++.
T Consensus 465 ~v~~i~TaN~~~i~~aL-l~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 465 DVMFVATSNSMNIPAPL-LDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceEEEEcCCCCCCCHHH-hcceeeeecCCCCHHHHHHHHHHhh
Confidence 33344455443322211 1112378999999999999888776
No 217
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.012 Score=67.94 Aligned_cols=53 Identities=28% Similarity=0.344 Sum_probs=41.5
Q ss_pred ccccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 184 LKELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
..++=|.+..+.++.+++.. +-...|-|.++|++|.|||.||++++....-.|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 46788999999998877652 112356789999999999999999999775443
No 218
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.077 Score=59.00 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=61.9
Q ss_pred CCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCC
Q 001277 291 KKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP 367 (1109)
Q Consensus 291 k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 367 (1109)
+.=++|+|+++... ..+.|+..+..-.+++.+|++|.+.+ ++..... ....+.+.+++.+++.+.+....
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~~~~~~~~~~~L~~~~------ 180 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVTPPSTAQAMQWLKGQG------ 180 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCCCCCHHHHHHHHHHcC------
Confidence 34478899998754 46777776665567788877777653 4333221 12379999999999999886542
Q ss_pred CchHHHHHHHHHHHhCCCchhHHHH
Q 001277 368 MGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 368 ~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
.+ ....++..++|.|+....+
T Consensus 181 ~~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 IT----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred Cc----hHHHHHHHcCCCHHHHHHH
Confidence 11 1356789999999876555
No 219
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.68 E-value=0.0045 Score=66.57 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=57.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHH-hhccCcc--cccc------
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDL-LKLADIS--IWNV------ 277 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~~~~~--~~~~------ 277 (1109)
..+.++|.|.+|.||||||+.+++.++.+|+..+++..+.+...+ +..+.+.+...- ....-.. ..+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~E---v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTRE---GNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 346799999999999999999999999888888887766554322 333333333210 0000000 0010
Q ss_pred --cccHHHHHHHH--c-CCCCceEeccCCCHHH
Q 001277 278 --DDGINIIGSRL--R-QKKVLLVIDDVADVEQ 305 (1109)
Q Consensus 278 --~~~~~~l~~~L--~-~k~~LlVLDdv~~~~~ 305 (1109)
....-.+.+++ + ++.+|+++||+-...+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 01122234444 3 7899999999855443
No 220
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.68 E-value=0.00022 Score=85.93 Aligned_cols=110 Identities=32% Similarity=0.452 Sum_probs=50.1
Q ss_pred cCCCcEEeCCCCcCCcc--ccccccccCcCcEEEecCC-CCCCcc----cccccCCCCCcEEeccCcc-CcccC-Ccc-c
Q 001277 596 LTGLVLLNLKDCKNLKS--LSHTLRRLQCLKNLTLSGC-SKLKKF----PESLGSMKDLMELFLDGTS-IAEVP-SSI-E 665 (1109)
Q Consensus 596 l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~L~~~-~~~~~~----p~~l~~l~~L~~L~L~~~~-i~~lp-~~i-~ 665 (1109)
++.|+.|.+.+|..+.. +-......++|+.|++++| ...... ......+.+|+.|+++.+. ++..- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555544443 2223444556666666552 111111 1122334555555555544 33211 111 1
Q ss_pred CCCCCcEEeeeccCCCcc--cCCCCCCCCCCcEEEecCCCCC
Q 001277 666 LLTGLQLLNLNNCSNLVR--LPSCINGLRSLKTLNLSGCSKL 705 (1109)
Q Consensus 666 ~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~Ls~c~~l 705 (1109)
.+++|+.|.+.+|..++. +-.....+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 255666666666654211 1112234566666666666654
No 221
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.02 Score=67.37 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
..-|.|.|..|+|||+||+++++.+...- .+++..+....-....+..+|+.+ ...+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l------------------~~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFL------------------NNVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHH------------------HHHHHHH
Confidence 45688999999999999999999887443 334333322221222244444433 1233455
Q ss_pred HcCCCCceEeccCCCHH------------HHHHHHhcC----C-CCCCCcE--EEEEeCCchhhH-----hhCCCccceE
Q 001277 288 LRQKKVLLVIDDVADVE------------QLQNLARKR----D-WFGPGSK--IVITTRDKQLLV-----AHEVDEEHIY 343 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~~------------~~~~l~~~~----~-~~~~gs~--IiiTTR~~~v~~-----~~~~~~~~~~ 343 (1109)
+...+-+|||||++-.. .-+.+...+ . ....+.+ +|-|.....-.. ..-.. ...
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq--~~~ 568 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQ--IVI 568 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceE--EEE
Confidence 66789999999995431 111111111 0 1123444 333333222111 11122 268
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC-chhHHHHh
Q 001277 344 NLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL-PLALTVLG 393 (1109)
Q Consensus 344 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l~ 393 (1109)
.+..++..+-.++++...-. .... ...+...-+..+|+|. |.-++++.
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~-~~~~-~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSK-NLSD-ITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred ecCCcchhHHHHHHHHHHHh-hhhh-hhhHHHHHHHHhcCCccchhHHHHH
Confidence 89999998888887765432 2211 1122223366677664 55555443
No 222
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.60 E-value=0.028 Score=61.34 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=21.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
+-|.|.|.+|+|||+||+++++....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 45679999999999999999986543
No 223
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.017 Score=65.46 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=74.9
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIG 285 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1109)
.....+.+.|++|.|||+||..++. ...|+.+-.+. . .+--+ + +..+....++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS---p-e~miG-~--------------------sEsaKc~~i~ 588 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS---P-EDMIG-L--------------------SESAKCAHIK 588 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC---h-HHccC-c--------------------cHHHHHHHHH
Confidence 4566788999999999999998876 45677544442 1 00011 1 1111222222
Q ss_pred H----HHcCCCCceEeccCCCHHH------------HHHHHhcC---CCCCCCcEEEEEeCCchhhHhhCCCc--cceEE
Q 001277 286 S----RLRQKKVLLVIDDVADVEQ------------LQNLARKR---DWFGPGSKIVITTRDKQLLVAHEVDE--EHIYN 344 (1109)
Q Consensus 286 ~----~L~~k~~LlVLDdv~~~~~------------~~~l~~~~---~~~~~gs~IiiTTR~~~v~~~~~~~~--~~~~~ 344 (1109)
. .-+..--.||+||++..-+ ++.|.-.+ +..+..--|+-||....++..++... ...|+
T Consensus 589 k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~ 668 (744)
T KOG0741|consen 589 KIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIH 668 (744)
T ss_pred HHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheee
Confidence 2 2244556899999976543 33433332 22222334555777778888776432 12789
Q ss_pred cCCCCH-HHHHHHHHHh
Q 001277 345 LEVLSN-DEALQLFSMK 360 (1109)
Q Consensus 345 l~~L~~-~ea~~Lf~~~ 360 (1109)
|+.++. ++..+.++..
T Consensus 669 Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEEL 685 (744)
T ss_pred cCccCchHHHHHHHHHc
Confidence 999987 6777766544
No 224
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.56 E-value=0.0082 Score=66.66 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=28.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3457889999999999999999998865433344553
No 225
>PRK04132 replication factor C small subunit; Provisional
Probab=96.55 E-value=0.019 Score=71.37 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=88.8
Q ss_pred cCCchhHHHHHHHHHHH-hccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCc
Q 001277 216 MGGLGKTTLARVAYDLI-SHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVL 294 (1109)
Q Consensus 216 ~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~L 294 (1109)
+.++||||+|.++++.+ .+.+...+.-.+. ++..+ +..+ +++..+....... -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rg-id~I-R~iIk~~a~~~~~---------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNA---SDERG-INVI-REKVKEFARTKPI---------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCccc-HHHH-HHHHHHHHhcCCc---------------CCCCCEE
Confidence 88999999999999976 2223222222221 11112 3322 2222222210000 0124469
Q ss_pred eEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchH
Q 001277 295 LVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEY 371 (1109)
Q Consensus 295 lVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~ 371 (1109)
+|||+++... +.+.|...........++|++|.+.. +..... .....+.+.+++.++..+.+.+.+-...-. -.
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr-SRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~ 710 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LT 710 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh-hhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CC
Confidence 9999998764 56677766655556778887777653 222211 112389999999999998887766432211 12
Q ss_pred HHHHHHHHHHhCCCchhH
Q 001277 372 VELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 372 ~~~~~~i~~~~~GlPLal 389 (1109)
.+....|++.++|-+...
T Consensus 711 ~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 467889999999988543
No 226
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.55 E-value=0.02 Score=71.27 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=38.5
Q ss_pred cccccchhhHHHHHhhhccc-------CCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 185 KELVGIDSRLEKLRFLIATE-------SSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..++|.+..++.|...+... ......+.++|++|+|||++|++++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999888777621 11245788999999999999999988774
No 227
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.012 Score=68.95 Aligned_cols=189 Identities=16% Similarity=0.206 Sum_probs=109.3
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc----ccceEEeeechhhhcccCChH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE----FDGSTFLANVREKSEKEGSVV 256 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ 256 (1109)
|....++||-+.-...|...+..+. -..--...|+-|+||||+|+.++..+--. .+.+---..++... .+...
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~--~g~~~ 88 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN--EGSLI 88 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh--cCCcc
Confidence 3455678999999999998886432 12334578999999999999998754211 11110000001110 00011
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHH--------cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEe
Q 001277 257 SLQKQLLSDLLKLADISIWNVDDGINIIGSRL--------RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITT 326 (1109)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT 326 (1109)
++.. +. .-...+++.+++.. .++.=+.|||.|.-. ..+..|+..+..-.++...|+.|
T Consensus 89 DviE-----iD-------aASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 89 DVIE-----ID-------AASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cchh-----hh-------hhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEec
Confidence 1100 00 00111333333333 234457889999654 56888888776656777778877
Q ss_pred CCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 327 RDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 327 R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
.+.+-....-......|.++.++.++-...+...+-...- ....+....|++..+|-.
T Consensus 157 Te~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 157 TEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEGSL 214 (515)
T ss_pred CCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCCh
Confidence 7764222221222237999999999999988877744332 233455667777777744
No 228
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.52 E-value=0.061 Score=62.51 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
...+|.++|.+|+||||+|..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999998877654
No 229
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.47 E-value=0.026 Score=69.64 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=71.1
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 288 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1109)
+-|.|+|++|.|||++|+.++......|- .+. ... +... ... .........+....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~~~----------~~~~----~~g------~~~~~~~~~f~~a~ 241 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-GSD----------FVEM----FVG------VGASRVRDMFEQAK 241 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-hHH----------hHHh----hhc------ccHHHHHHHHHHHH
Confidence 44899999999999999999887654431 111 110 0000 000 00001111222223
Q ss_pred cCCCCceEeccCCCHH----------------HHHHHHhcCCCC--CCCcEEEEEeCCchhhHhh-----CCCccceEEc
Q 001277 289 RQKKVLLVIDDVADVE----------------QLQNLARKRDWF--GPGSKIVITTRDKQLLVAH-----EVDEEHIYNL 345 (1109)
Q Consensus 289 ~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~~~l 345 (1109)
...+.+|+||+++... .+..++...+.+ ..+.-+|.||.....+... ..+. .+.+
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr--~i~v 319 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDR--QVVV 319 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccce--EEEc
Confidence 3568899999986641 133343333322 2344555577655432221 2233 7889
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 001277 346 EVLSNDEALQLFSMKAFK 363 (1109)
Q Consensus 346 ~~L~~~ea~~Lf~~~af~ 363 (1109)
+..+.++..+++..+..+
T Consensus 320 ~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 320 GLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999998887643
No 230
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.046 Score=66.25 Aligned_cols=175 Identities=19% Similarity=0.263 Sum_probs=103.8
Q ss_pred ccccccccchhhHHHHHhhhc---c-------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 182 EILKELVGIDSRLEKLRFLIA---T-------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
....++.|.|+..++|.+... . +..-++=|.++|++|.|||-||++++-.-.= =|+......
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-----PF~svSGSE--- 379 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSVSGSE--- 379 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-----ceeeechHH---
Confidence 345788898877766655443 2 2233567899999999999999999974432 233211100
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH----cCCCCceEeccCCCH-----------------HHHHHHH
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL----RQKKVLLVIDDVADV-----------------EQLQNLA 310 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~-----------------~~~~~l~ 310 (1109)
... -+. ..+...+++.+ .+.+..|.+|+++.. ..++.|+
T Consensus 380 ---FvE-------~~~----------g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll 439 (774)
T KOG0731|consen 380 ---FVE-------MFV----------GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL 439 (774)
T ss_pred ---HHH-------Hhc----------ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHH
Confidence 000 000 00112222222 356788888887442 1266777
Q ss_pred hcCCCCCCCcEE--EEEeCCchhhHhh-----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhC
Q 001277 311 RKRDWFGPGSKI--VITTRDKQLLVAH-----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAG 383 (1109)
Q Consensus 311 ~~~~~~~~gs~I--iiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~ 383 (1109)
...+.+.....| |-+|+...++... +.+. .+.++.-+.....++|..|+-..... .+..++++ |+...-
T Consensus 440 ~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr--~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~ 515 (774)
T KOG0731|consen 440 VEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDR--QIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTP 515 (774)
T ss_pred HHhcCCcCCCcEEEEeccCCccccCHHhcCCCcccc--ceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCC
Confidence 766655544433 3345444433221 2333 78888899999999999998554433 44556777 999998
Q ss_pred CCchh
Q 001277 384 GLPLA 388 (1109)
Q Consensus 384 GlPLa 388 (1109)
|++=|
T Consensus 516 gf~ga 520 (774)
T KOG0731|consen 516 GFSGA 520 (774)
T ss_pred CCcHH
Confidence 88855
No 231
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.44 E-value=0.031 Score=71.25 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=71.5
Q ss_pred cccccchhhHHHHHhhhccc------CC-CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 185 KELVGIDSRLEKLRFLIATE------SS-DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
..++|.+..++.+...+... .+ ....+.++|+.|+|||+||+++++.+-..-...+-+ +..+..+.+. ...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~-~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHT-VSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-Echhcccccc-HHH
Confidence 57899999999887776521 11 234567899999999999999998764322222222 2222222111 111
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHHcCCC-CceEeccCCCH--HHHHHHHhcCCCC-----------CCCcEEE
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKK-VLLVIDDVADV--EQLQNLARKRDWF-----------GPGSKIV 323 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~~--~~~~~l~~~~~~~-----------~~gs~Ii 323 (1109)
+ ++...+. ...+ ....+.+.++.++ -+++||+++.. +.++.|+..+..+ -..+.||
T Consensus 587 l-------~g~~~gy--vg~~-~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 587 L-------IGSPPGY--VGYN-EGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred h-------cCCCCcc--cCcC-ccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 0 1111111 0111 1123455566565 48899999754 4456665554321 1345566
Q ss_pred EEeCC
Q 001277 324 ITTRD 328 (1109)
Q Consensus 324 iTTR~ 328 (1109)
+||..
T Consensus 657 ~Tsn~ 661 (821)
T CHL00095 657 MTSNL 661 (821)
T ss_pred EeCCc
Confidence 67664
No 232
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.44 E-value=0.0018 Score=67.46 Aligned_cols=85 Identities=29% Similarity=0.279 Sum_probs=52.9
Q ss_pred CCCCCCCCEEecCCCCCC-CCCcccccCCCCCCCEEeCCCCCCcccc--hhhhccCCCCceeccCCcCcCc------CCC
Q 001277 781 LSGLHSLSKLDLSDCGLG-EGAIPNDIGNLCSLKQLNLSQNNFVTLP--ASINSLFNLGQLDLEDCKRLQS------MPQ 851 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~-~~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~c~~L~~------lp~ 851 (1109)
+..+++|+.|.+|.|+.. .+.++-....+|+|++|+|++|++..+. ..+..+.+|..|++.+|.-.+- +-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 445667888888888321 2334444555688888888888776422 2456777888888888865541 112
Q ss_pred CCCCcceEeccCCc
Q 001277 852 LPSNLYEVQVNGCA 865 (1109)
Q Consensus 852 lp~~L~~L~~~~C~ 865 (1109)
+.++|++|+-.++.
T Consensus 141 ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVD 154 (260)
T ss_pred HhhhhccccccccC
Confidence 44566666655544
No 233
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.42 E-value=0.027 Score=71.57 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=39.1
Q ss_pred cccccchhhHHHHHhhhcc-------cCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 185 KELVGIDSRLEKLRFLIAT-------ESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++|.+..++.+.+.+.. ......++.++|++|+|||.||++++..+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 5789999999988777642 1223457889999999999999999887643
No 234
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.081 Score=59.45 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCC
Q 001277 291 KKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP 367 (1109)
Q Consensus 291 k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 367 (1109)
+.=++|+|+++.. +..+.|+..+..-.+++.+|++|.+. .++..... ....+.+.+++.++..+.+.... .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 3447889999765 45777777766556788777666654 44433221 11379999999999999987652 1
Q ss_pred CchHHHHHHHHHHHhCCCchhHHHH
Q 001277 368 MGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 368 ~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
+. ...++..++|.|.....+
T Consensus 206 -~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755444
No 235
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.39 E-value=0.0081 Score=67.22 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=59.0
Q ss_pred HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc-cceEEeeechhhhcccCChHHHHHHHHHHHhhcc-Ccc
Q 001277 196 KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLA-DIS 273 (1109)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-~~~ 273 (1109)
++.+.+..-. ...-++|+|.+|.|||||++.+++.+..+. +..+++..+.+. .....++.+.+...+.... +..
T Consensus 122 RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 122 RVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCCC
Confidence 3555554322 335678999999999999999999887654 333344334332 2225666666655443211 110
Q ss_pred cc---cccccHHHHHHHH--cCCCCceEeccCCCHH
Q 001277 274 IW---NVDDGINIIGSRL--RQKKVLLVIDDVADVE 304 (1109)
Q Consensus 274 ~~---~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~ 304 (1109)
.. ........+.+++ .+++++||+|++....
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 00 0111111222222 4789999999986544
No 236
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.11 Score=58.51 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+.++|+++|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45899999999999999999998876543
No 237
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.35 E-value=0.021 Score=60.23 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=27.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
.++|+|..|.|||||+..+.....+.|......
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 577999999999999999999899999544433
No 238
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.35 E-value=0.0085 Score=68.64 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=38.4
Q ss_pred ccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 184 LKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34677888888888888864 356888999999999999999987753
No 239
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.33 E-value=0.0033 Score=59.73 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 240
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.32 E-value=0.0034 Score=69.91 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=41.6
Q ss_pred cccccchhhHHHHHhhhccc----CCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 185 KELVGIDSRLEKLRFLIATE----SSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++|.++.++++.+++... ....++++++|++|.||||||+++++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37999999999998888632 234688999999999999999999986644
No 241
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.012 Score=63.45 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=27.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEE
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTF 241 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 241 (1109)
...-+.++|.+|+|||.||.++.+++. +....+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~ 137 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVL 137 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEE
Confidence 456689999999999999999999888 4433333
No 242
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.28 E-value=0.0075 Score=64.39 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.6
Q ss_pred HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 196 KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
.|.++|..+-....++.|+|.+|.|||++|.+++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455555444445679999999999999999999887655545566665
No 243
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.26 E-value=0.0066 Score=60.64 Aligned_cols=103 Identities=22% Similarity=0.352 Sum_probs=53.5
Q ss_pred CcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEec
Q 001277 621 QCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLS 700 (1109)
Q Consensus 621 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 700 (1109)
.+...+||++|.... -+.+..++.|.+|.|++|.|..+...+.. .+++|+.|.|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~-----------------------~~p~l~~L~Lt 96 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDT-----------------------FLPNLKTLILT 96 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhh-----------------------hccccceEEec
Confidence 345566666653221 12233455555555555555555443322 23444444444
Q ss_pred CCCCC--cccCcccCCCCCccEEecCCCcccCCC----ccccccCCCcEEEccCC
Q 001277 701 GCSKL--QNVPETLGQVESLEELDISGTAIRRPP----SSIFVMNNLKTLSFSGC 749 (1109)
Q Consensus 701 ~c~~l--~~lp~~l~~l~~L~~L~L~~~~i~~~p----~~l~~l~~L~~L~L~~c 749 (1109)
+|+.. +.+ ..+..++.|++|.+-+|.++... -.+..+++|+.||+.+-
T Consensus 97 nNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred Ccchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 44321 111 22445566777777676666542 34667888888888753
No 244
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.26 E-value=0.014 Score=60.67 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=64.4
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 288 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1109)
.+|.|+|+.|.||||++.++...+.......++...- . ........ ..+....... .+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~--~------~E~~~~~~-~~~i~q~~vg-~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED--P------IEFVHESK-RSLINQREVG-LDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC--C------ccccccCc-cceeeecccC-CCccCHHHHHHHHh
Confidence 4789999999999999999888776554444443211 0 00000000 0000000010 22334566777888
Q ss_pred cCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchh
Q 001277 289 RQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQL 331 (1109)
Q Consensus 289 ~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 331 (1109)
+..+=+|++|++.+.+.+...+... ..|..++.|+-...+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 8888899999998887766554432 346567777665443
No 245
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.25 E-value=0.038 Score=56.84 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=41.9
Q ss_pred ccccccccchhhHHHHHhhhc--ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccc
Q 001277 182 EILKELVGIDSRLEKLRFLIA--TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDG 238 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 238 (1109)
..-..++|.|...+.|.+--. ..+-..--|.+||.-|+||+.|++++.+.+.+..-.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 345678999988887754322 112223458899999999999999999998887654
No 246
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.055 Score=63.64 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=85.8
Q ss_pred ccccchhhHHHHHhhhc-----------ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCC
Q 001277 186 ELVGIDSRLEKLRFLIA-----------TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGS 254 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 254 (1109)
++=|.++...+|.+... .+-+..+-|..+|+||.|||++|+++++.-.-.|-.. ..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv------kg------- 501 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV------KG------- 501 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec------cC-------
Confidence 34446666666654443 1224567899999999999999999999776655211 00
Q ss_pred hHHHHHHHHHHHhhccCcccccccccHHHHHHH-HcCCCCceEeccCCCHH-------------HHHHHHhcCCCCCCCc
Q 001277 255 VVSLQKQLLSDLLKLADISIWNVDDGINIIGSR-LRQKKVLLVIDDVADVE-------------QLQNLARKRDWFGPGS 320 (1109)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs 320 (1109)
.++++... .+.+..+..+-+. -+-.+.+|.||.+|... .+..|+...+......
T Consensus 502 -----pEL~sk~v-------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 502 -----PELFSKYV-------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred -----HHHHHHhc-------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 01111111 1111111111111 12356888889876542 2555666655444444
Q ss_pred EEEE---EeCCchhhHhh----CCCccceEEcCCCCHHHHHHHHHHhhhc
Q 001277 321 KIVI---TTRDKQLLVAH----EVDEEHIYNLEVLSNDEALQLFSMKAFK 363 (1109)
Q Consensus 321 ~Iii---TTR~~~v~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 363 (1109)
.|+| |-|...+-.+. +.+. ++.++.-+.+...++|..++-+
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~--iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDR--IIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccce--eEeecCccHHHHHHHHHHHHhc
Confidence 4443 34443332222 2444 8889988999999999998844
No 247
>PRK08118 topology modulation protein; Reviewed
Probab=96.23 E-value=0.0087 Score=60.35 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.3
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.|.|+|++|+||||||+.+++.+.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999997653
No 248
>PRK07261 topology modulation protein; Provisional
Probab=96.20 E-value=0.0076 Score=61.08 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999988764
No 249
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.20 E-value=0.014 Score=59.61 Aligned_cols=37 Identities=27% Similarity=0.518 Sum_probs=31.8
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...+|.+.|+.|.||||+|+.++.++..++...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999999987777777763
No 250
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.023 Score=67.00 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=44.2
Q ss_pred ccccchhhHHHHHhhhcc----cCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc
Q 001277 186 ELVGIDSRLEKLRFLIAT----ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD 237 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1109)
.-+|+++-.++|.+.+.. ++.+..++..+|++|+|||.+|+.++..+...|-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 468999999999888873 4456789999999999999999999998877663
No 251
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.058 Score=55.36 Aligned_cols=152 Identities=18% Similarity=0.364 Sum_probs=86.8
Q ss_pred Cccccccccc-chhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechh
Q 001277 180 KPEILKELVG-IDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVRE 247 (1109)
Q Consensus 180 ~~~~~~~~vG-r~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 247 (1109)
.|....+.|| .|..+++|.+.+... -..++-|.++|++|.|||-||++|++. ..+.|+. +..
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~fir-vsg 214 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIR-VSG 214 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEE-ech
Confidence 4444445555 467777776665422 234567889999999999999999973 3345553 222
Q ss_pred hhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH----cCCCCceEeccCCCHH-------------H---HH
Q 001277 248 KSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL----RQKKVLLVIDDVADVE-------------Q---LQ 307 (1109)
Q Consensus 248 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~~-------------~---~~ 307 (1109)
-.-+|+.+ .++...+++.+ .+.+-.|++|.+++.. . .-
T Consensus 215 -------selvqk~i---------------gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtml 272 (404)
T KOG0728|consen 215 -------SELVQKYI---------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTML 272 (404)
T ss_pred -------HHHHHHHh---------------hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHH
Confidence 11122221 11222233322 3567889999886532 1 22
Q ss_pred HHHhcCCCC--CCCcEEEEEeCCchhhHh-----hCCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 308 NLARKRDWF--GPGSKIVITTRDKQLLVA-----HEVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 308 ~l~~~~~~~--~~gs~IiiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
+|+..++.| ...-+||..|..-+++.. -..+. .++.++-+++...+++.-+.
T Consensus 273 ellnqldgfeatknikvimatnridild~allrpgridr--kiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 273 ELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDR--KIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred HHHHhccccccccceEEEEeccccccccHhhcCCCcccc--cccCCCCCHHHHHHHHHHhh
Confidence 334444433 245677777754333222 22333 68888888888888877664
No 252
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.19 E-value=0.17 Score=57.47 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=35.5
Q ss_pred hhhHHHHHhhhcccC-CCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 191 DSRLEKLRFLIATES-SDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 191 ~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+.-.+.|.+.+...+ ....+|+|.|.=|.||||+.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 334556666666443 678899999999999999999999988776
No 253
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.16 E-value=0.051 Score=65.50 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=39.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
|....+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++..
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344567999999999998776433 33457899999999999999998743
No 254
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.16 E-value=0.052 Score=69.47 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=39.9
Q ss_pred ccccccchhhHHHHHhhhccc------CC-CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 184 LKELVGIDSRLEKLRFLIATE------SS-DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...++|.+..++.+...+... .. ...++.++|++|+|||++|+.++..+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 356899999999988877632 11 2356889999999999999999987644
No 255
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.05 Score=61.70 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=37.3
Q ss_pred ccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 186 ELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.++|-+....++..+......-...+.++|++|+||||+|.++++.+-.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 3567777777777777643333445899999999999999999987753
No 256
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.019 Score=66.33 Aligned_cols=128 Identities=16% Similarity=0.255 Sum_probs=77.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
..-|.+||++|.|||-||++|++.-...| +. ++.. +++.... ...+..+..+..+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VKGP------------ELlNkYV-------GESErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VKGP------------ELLNKYV-------GESERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ecCH------------HHHHHHh-------hhHHHHHHHHHHH
Confidence 45588999999999999999999877665 22 2111 1222111 1112222333233
Q ss_pred H-cCCCCceEeccCCCH-------------HHHHHHHhcCCCCC--CCcEEEEEeCCchh-hHh----hCCCccceEEcC
Q 001277 288 L-RQKKVLLVIDDVADV-------------EQLQNLARKRDWFG--PGSKIVITTRDKQL-LVA----HEVDEEHIYNLE 346 (1109)
Q Consensus 288 L-~~k~~LlVLDdv~~~-------------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v-~~~----~~~~~~~~~~l~ 346 (1109)
. ...+++|++|.++.. ..+..|+..++... .|.-||-.|..+++ -.+ -+.+. ...|+
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk--~LyV~ 677 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDK--LLYVG 677 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCc--eeeec
Confidence 2 367999999998653 12556666655332 35555655543332 222 23444 78889
Q ss_pred CCCHHHHHHHHHHhhh
Q 001277 347 VLSNDEALQLFSMKAF 362 (1109)
Q Consensus 347 ~L~~~ea~~Lf~~~af 362 (1109)
.-+.+|-.+++....-
T Consensus 678 lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 678 LPNAEERVAILKTITK 693 (802)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999988774
No 257
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.13 E-value=0.019 Score=57.52 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=68.9
Q ss_pred cchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhh
Q 001277 189 GIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLK 268 (1109)
Q Consensus 189 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 268 (1109)
|-+..++.|...+..+ .-...+.++|..|+||+|+|.++++.+-..-.... .. + .-...+.+....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c---------~-~c~~c~~~~~~~-- 66 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PC---------G-ECRSCRRIEEGN-- 66 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------------S-SSHHHHHHHTT---
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CC---------C-CCHHHHHHHhcc--
Confidence 4455666777666533 23456889999999999999999986532211000 00 0 000000000000
Q ss_pred ccCcc---cccc--cccHHHHH---HHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch-hh
Q 001277 269 LADIS---IWNV--DDGINIIG---SRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LL 332 (1109)
Q Consensus 269 ~~~~~---~~~~--~~~~~~l~---~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~ 332 (1109)
..+.. .... .-.++.++ +.+ .++.=++||||++.. +...+|+..+.....++++|++|++.. +.
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL 146 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred CcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence 00000 0000 00112222 222 134458899999865 446677766655568899999998765 22
Q ss_pred HhhCCCccceEEcCCC
Q 001277 333 VAHEVDEEHIYNLEVL 348 (1109)
Q Consensus 333 ~~~~~~~~~~~~l~~L 348 (1109)
..... ....+.+.++
T Consensus 147 ~TI~S-Rc~~i~~~~l 161 (162)
T PF13177_consen 147 PTIRS-RCQVIRFRPL 161 (162)
T ss_dssp HHHHT-TSEEEEE---
T ss_pred HHHHh-hceEEecCCC
Confidence 22211 1125666655
No 258
>PRK10867 signal recognition particle protein; Provisional
Probab=96.13 E-value=0.12 Score=59.84 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=24.8
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999998888766655
No 259
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.12 E-value=0.13 Score=59.69 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+.++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999988888764
No 260
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.12 E-value=0.00028 Score=65.49 Aligned_cols=103 Identities=22% Similarity=0.329 Sum_probs=50.3
Q ss_pred CcEEEecCCCCC--CcccccccCCCCCcEEeccCccCcccCCcccC-CCCCcEEeeeccCCCcccCCCCCCCCCCcEEEe
Q 001277 623 LKNLTLSGCSKL--KKFPESLGSMKDLMELFLDGTSIAEVPSSIEL-LTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNL 699 (1109)
Q Consensus 623 L~~L~L~~~~~~--~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~-l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 699 (1109)
+..++|+.|... ...+..+.....|...+|++|.+..+|..+.. .+.++.|+|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~---------------------- 86 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN---------------------- 86 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch----------------------
Confidence 445566665321 11222333444555556666666655544322 22444444444
Q ss_pred cCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCC
Q 001277 700 SGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCN 750 (1109)
Q Consensus 700 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~ 750 (1109)
|. +..+|+.+..++.|+.|+++.|.+...|..+..+.+|-.|+..++.
T Consensus 87 --ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 87 --NE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred --hh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 32 3445555555555555555555555555555555555555554443
No 261
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.0059 Score=58.73 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=29.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc-ccce-EEeeechh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHE-FDGS-TFLANVRE 247 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~-~~~~~~~~ 247 (1109)
-|+|+||+|+||||+++.+++.++.. |... ++...+++
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 58899999999999999999988776 6544 33444443
No 262
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.07 E-value=0.021 Score=58.96 Aligned_cols=131 Identities=19% Similarity=0.265 Sum_probs=56.5
Q ss_pred chhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHH-H-hccccceEEeeechhhhccc----CChHHHHHHHH
Q 001277 190 IDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDL-I-SHEFDGSTFLANVREKSEKE----GSVVSLQKQLL 263 (1109)
Q Consensus 190 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~~~~~----~~~~~l~~~ll 263 (1109)
+..+-....+.|. +..+|.+.|++|.|||.||.+.+.+ + ...|+..++....-+..+.- ++..+-..-.+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3444444444444 3468999999999999999877753 3 35566666654332222211 11111111111
Q ss_pred HHHhhccCcccccccccHHHHH----------HHHcCC---CCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 264 SDLLKLADISIWNVDDGINIIG----------SRLRQK---KVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~----------~~L~~k---~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
.-+...-... .. ....+.+. ..++++ ..+||+|++.+. +++..++.. .+.||+||++--.
T Consensus 81 ~p~~d~l~~~-~~-~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 81 RPIYDALEEL-FG-KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHHTTT-S--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHHH-hC-hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 1111000000 00 01111111 123343 568999999664 467777654 5899999998765
Q ss_pred c
Q 001277 329 K 329 (1109)
Q Consensus 329 ~ 329 (1109)
.
T Consensus 156 ~ 156 (205)
T PF02562_consen 156 S 156 (205)
T ss_dssp -
T ss_pred e
Confidence 4
No 263
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.031 Score=63.54 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=78.2
Q ss_pred cccccchhh---HHHHHhhhccc-------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCC
Q 001277 185 KELVGIDSR---LEKLRFLIATE-------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGS 254 (1109)
Q Consensus 185 ~~~vGr~~~---l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 254 (1109)
++.-|.|+. +++|.+.|... +.=++-|.++|++|.|||-||++++-+-.-. .|...-. +++
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGS----EFd- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGS----EFD- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEecccc----chh-
Confidence 445677654 45556666532 2225678999999999999999998744322 2332111 111
Q ss_pred hHHHHHHHHHHHhhccCcccccccccHHHHHHHH----cCCCCceEeccCCCHH-------------HHHHHHhcCCCCC
Q 001277 255 VVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL----RQKKVLLVIDDVADVE-------------QLQNLARKRDWFG 317 (1109)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~~ 317 (1109)
+ .-+..+..++++.+ +.-++.|+||.+|... .+..|+...+.|.
T Consensus 375 ------E-------------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~ 435 (752)
T KOG0734|consen 375 ------E-------------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK 435 (752)
T ss_pred ------h-------------hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC
Confidence 0 11112233333333 3568999999986532 2666777666665
Q ss_pred CC--cEEEEEeCC-chhhHhh----CCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 318 PG--SKIVITTRD-KQLLVAH----EVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 318 ~g--s~IiiTTR~-~~v~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
+. -.||-.|.. +.+-.+. +.+. .+.|+.-+-.--.++|..+.
T Consensus 436 qNeGiIvigATNfpe~LD~AL~RPGRFD~--~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 436 QNEGIIVIGATNFPEALDKALTRPGRFDR--HVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred cCCceEEEeccCChhhhhHHhcCCCccce--eEecCCCCcccHHHHHHHHH
Confidence 43 333333433 3332222 1222 45555555555555555554
No 264
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.05 E-value=0.0034 Score=61.32 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 001277 211 MGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.03 E-value=0.015 Score=58.25 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=25.9
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
++.|+|.+|.||||+|..++.....+-...+|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987765433444443
No 266
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.02 E-value=0.11 Score=56.79 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=25.4
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.+.+++.++|++|+||||++..++..++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999888877554
No 267
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.00 E-value=0.044 Score=54.11 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=58.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHh----hcc-Ccccc-------c
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL----KLA-DISIW-------N 276 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~----~~~-~~~~~-------~ 276 (1109)
.+|-|++-.|.||||+|...+-+...+=-.+.|+.-+... ...+ -....+.+ ..+. ... ..... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~g-E~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYG-ELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccC-HHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888889999999988877655442223332222221 1112 12222221 0010 000 00000 1
Q ss_pred ccccHHHHHHHHcC-CCCceEeccCCCHH-----HHHHHHhcCCCCCCCcEEEEEeCCch
Q 001277 277 VDDGINIIGSRLRQ-KKVLLVIDDVADVE-----QLQNLARKRDWFGPGSKIVITTRDKQ 330 (1109)
Q Consensus 277 ~~~~~~~l~~~L~~-k~~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IiiTTR~~~ 330 (1109)
..+..+..++.+.. +-=|+|||++-..- ..+.+...+....++..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223333444443 44599999984331 12333333333457889999999864
No 268
>PRK06696 uridine kinase; Validated
Probab=95.97 E-value=0.0083 Score=63.86 Aligned_cols=46 Identities=24% Similarity=0.179 Sum_probs=35.3
Q ss_pred chhhHHHHHhhhcc-cCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 190 IDSRLEKLRFLIAT-ESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 190 r~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
|.+.+++|.+.+.. ......+|+|.|.+|.||||||+.++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45566666666542 34567899999999999999999999987543
No 269
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.96 E-value=0.041 Score=59.41 Aligned_cols=177 Identities=20% Similarity=0.225 Sum_probs=93.3
Q ss_pred cccccccchhhHHHHHhhhccc--CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc-cCChHHHH
Q 001277 183 ILKELVGIDSRLEKLRFLIATE--SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK-EGSVVSLQ 259 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~ 259 (1109)
.-..++|-.++..++..++... ..+..-|.|+|+.|.|||+|......+ ...+.-...+....+.... .-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3456899999999888887621 123346789999999999998665544 2233333333322221111 10134444
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHHcC------CCCceEeccCCCHH----H--HHHHHhc-CCCCCCCcEEEEEe
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRLRQ------KKVLLVIDDVADVE----Q--LQNLARK-RDWFGPGSKIVITT 326 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~------k~~LlVLDdv~~~~----~--~~~l~~~-~~~~~~gs~IiiTT 326 (1109)
.++..++.... ....+..+....+...|+. -++.+|+|.+|--. | +-.+... -....|-+-|-+||
T Consensus 101 rql~~e~~~~~-k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 101 RQLALELNRIV-KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHhhhh-eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 44444443221 1114445556666666643 36888998875432 2 2222221 11234667788999
Q ss_pred CCchhhHh-----hCCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 327 RDKQLLVA-----HEVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 327 R~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
|-..+... .+.....++-++.++-+|-.++++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 96432111 111111145555666666666555443
No 270
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.18 Score=56.56 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=47.5
Q ss_pred ceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCch
Q 001277 294 LLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGE 370 (1109)
Q Consensus 294 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~ 370 (1109)
++|+|+++.. ...+.++..+.....+..+|++|.+.. +.... ......+.+.+++.+++.+.+.... . ...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti-~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~~ 189 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI-KSRCRKMVLPAPSHEEALAYLRERG----V-AEP 189 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHH-HHHhhhhcCCCCCHHHHHHHHHhcC----C-CcH
Confidence 4456887654 334444443333345677777777654 32221 1112278999999999998886542 1 111
Q ss_pred HHHHHHHHHHHhCCCchh
Q 001277 371 YVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 371 ~~~~~~~i~~~~~GlPLa 388 (1109)
. ..+..++|-|+.
T Consensus 190 --~---~~l~~~~g~p~~ 202 (325)
T PRK08699 190 --E---ERLAFHSGAPLF 202 (325)
T ss_pred --H---HHHHHhCCChhh
Confidence 1 123567898864
No 271
>PRK14974 cell division protein FtsY; Provisional
Probab=95.94 E-value=0.23 Score=55.67 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+.++|+++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999998888876553
No 272
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.93 E-value=0.0072 Score=58.90 Aligned_cols=46 Identities=26% Similarity=0.277 Sum_probs=32.9
Q ss_pred ccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 188 VGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 188 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
||....++++.+.+..-......|.|+|..|.||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777777777776664334446688999999999999998887443
No 273
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.063 Score=64.68 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=85.6
Q ss_pred ccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 184 LKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
.....|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.....|-....- +
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~----- 311 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----E----- 311 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----H-----
Confidence 34555666555555443321 123456889999999999999999999665554221110 0
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccH-HHHHHHHcCCCCceEeccCCCHH-------------HHHHHHhcCCCCCC
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGI-NIIGSRLRQKKVLLVIDDVADVE-------------QLQNLARKRDWFGP 318 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~-~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~~~ 318 (1109)
++.... ...+..+ .......+..+..|++|+++... ....++...+....
T Consensus 312 ---------l~sk~v-------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 312 ---------LLSKWV-------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK 375 (494)
T ss_pred ---------Hhcccc-------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc
Confidence 111000 1111111 22222335688999999985532 23444444433333
Q ss_pred C--cEEEEEeCCchhhHhh-----CCCccceEEcCCCCHHHHHHHHHHhhhc
Q 001277 319 G--SKIVITTRDKQLLVAH-----EVDEEHIYNLEVLSNDEALQLFSMKAFK 363 (1109)
Q Consensus 319 g--s~IiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 363 (1109)
. ..||-||-........ ..+. .+.++.-+.++..+.|..+.-.
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~--~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDR--LIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccce--EeecCCCCHHHHHHHHHHHhcc
Confidence 3 3344455443322211 2333 8999999999999999998853
No 274
>PRK04296 thymidine kinase; Provisional
Probab=95.88 E-value=0.013 Score=60.60 Aligned_cols=112 Identities=18% Similarity=0.118 Sum_probs=59.4
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccC-cccccccccHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLAD-ISIWNVDDGINIIGSR 287 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~~l~~~ 287 (1109)
.++.|+|..|.||||+|..++.+...+-..+.++. - ......+ .. .+++++..... .......+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~-~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYG-EG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-ccccccc-CC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 47889999999999999988887765533333331 0 0000111 11 12222210000 000122333333433
Q ss_pred HcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch
Q 001277 288 LRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ 330 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~ 330 (1109)
..++.-+||+|.+.-. +++..+...+. ..|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 2335568999998543 44544544322 57889999999844
No 275
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.86 E-value=0.31 Score=58.21 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=36.0
Q ss_pred HHHHcCCCCceEecc------CCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhhHhhCCCccceEEcCC
Q 001277 285 GSRLRQKKVLLVIDD------VADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEV 347 (1109)
Q Consensus 285 ~~~L~~k~~LlVLDd------v~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~ 347 (1109)
...+-.++=+||||. ++..+.++..+..+ +| .||+.|-|+....... .. ++.+.+
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~va-~~--i~~~~~ 511 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRVA-TR--IWLVED 511 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhc-ce--EEEEcC
Confidence 334457889999994 45556666666554 23 6888888888766654 22 666664
No 276
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.83 E-value=0.032 Score=59.54 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=33.9
Q ss_pred HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc------cceEEee
Q 001277 196 KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLA 243 (1109)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 243 (1109)
.|..+|..+-....++.|+|.+|.|||+||..++......- ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44455544445567999999999999999999887654443 4455654
No 277
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.83 E-value=0.034 Score=59.70 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=33.4
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..|.++|..+-....++.|+|.+|.|||+||.++......+=..+.|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455555544456789999999999999999998664433323445553
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.80 E-value=0.016 Score=61.57 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=35.3
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..|..+|..+-...+++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455556544455689999999999999999999887655433455553
No 279
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.77 E-value=0.011 Score=62.22 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=33.2
Q ss_pred hhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 200 LIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 200 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
+|..+-...+++.|+|.+|.|||++|.+++......-..++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34333345689999999999999999998877655555667775
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.76 E-value=0.052 Score=56.37 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=28.5
Q ss_pred HHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 194 LEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 194 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.+.+...+.. +-+++.|.|.+|.||||+++.+...+...
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3344444432 34688899999999999999988877664
No 281
>PRK07667 uridine kinase; Provisional
Probab=95.76 E-value=0.017 Score=59.93 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=31.9
Q ss_pred HHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 194 LEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 194 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
++.|.+.+........+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344555555444456899999999999999999999877653
No 282
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.74 E-value=0.022 Score=58.92 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.2
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+++|.++|+.|+||||.+..++.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 3789999999999999998888877665
No 283
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.71 E-value=0.22 Score=59.14 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=99.6
Q ss_pred cccccccchhhHHHHHhhhcc---cCCCeeEEEEEecCCchhHHHHHHHHHHHh---c--cccc--eEEeeechhhhccc
Q 001277 183 ILKELVGIDSRLEKLRFLIAT---ESSDVRMMGIWGMGGLGKTTLARVAYDLIS---H--EFDG--STFLANVREKSEKE 252 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~--~f~~--~~~~~~~~~~~~~~ 252 (1109)
++..+=+|+.+..+|...+.. .....+.+-|.|.+|.|||..+..|.+.+. . .-+. .+.+... ..
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm-----~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL-----RL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce-----ee
Confidence 566778999999999888762 223345888999999999999999998553 1 1222 2333222 11
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHc-----CCCCceEeccCCCHHH--HHHHHhcCCCC-CCCcEEEE
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR-----QKKVLLVIDDVADVEQ--LQNLARKRDWF-GPGSKIVI 324 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~Iii 324 (1109)
....++...++..+.... ..+....+.+..+.. .++.++++|+++..-. .+-+-..++|- .++|+++|
T Consensus 469 ~~~~~~Y~~I~~~lsg~~----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGER----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred cCHHHHHHHHHHhcccCc----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 225556666666655322 334455666666664 4578999999865422 22222333443 47787766
Q ss_pred EeCCc--hhh---------HhhCCCccceEEcCCCCHHHHHHHHHHhhh
Q 001277 325 TTRDK--QLL---------VAHEVDEEHIYNLEVLSNDEALQLFSMKAF 362 (1109)
Q Consensus 325 TTR~~--~v~---------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 362 (1109)
-+=.. .+. ...+. ..+...+-+.++-.+....+.-
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~---tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGL---TRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred EEecccccCHHHHhccchhhhccc---eeeecCCCCHHHHHHHHHHhhc
Confidence 54321 111 11111 2467777777777777666653
No 284
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.71 E-value=0.059 Score=64.11 Aligned_cols=51 Identities=29% Similarity=0.359 Sum_probs=39.1
Q ss_pred cccccccchhhHHHHHhhhcc---cCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 183 ILKELVGIDSRLEKLRFLIAT---ESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...+++.-.+.++++..||.. +....+++.++|++|.||||.++.+++.+.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344555556678888888873 233467999999999999999999998763
No 285
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.69 E-value=0.1 Score=58.81 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=37.2
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999888777764333345688999999999999999875
No 286
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.68 E-value=0.056 Score=58.08 Aligned_cols=49 Identities=10% Similarity=0.040 Sum_probs=34.3
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..|.++|..+-....++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4455556544456789999999999999999887664434344556664
No 287
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.66 E-value=0.025 Score=56.89 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=44.6
Q ss_pred EEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcC
Q 001277 211 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQ 290 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~ 290 (1109)
+.|.|.+|.|||++|.+++.. ......++... ...+ ..+++.+.......... +...+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~~~d--~em~~rI~~H~~~R~~~--w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----EAFD--DEMAERIARHRKRRPAH--WRTIETPRDLVSALKE 70 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----CcCC--HHHHHHHHHHHHhCCCC--ceEeecHHHHHHHHHh
Confidence 679999999999999988765 22344555321 1112 23444443332222211 4444555566666632
Q ss_pred --CCCceEeccC
Q 001277 291 --KKVLLVIDDV 300 (1109)
Q Consensus 291 --k~~LlVLDdv 300 (1109)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2347999986
No 288
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.63 E-value=0.1 Score=58.35 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=27.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
...+++++|++|+||||++..++..++.. ...+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~L 147 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLL 147 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEE
Confidence 46899999999999999999999877654 334444
No 289
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.24 Score=51.31 Aligned_cols=184 Identities=17% Similarity=0.281 Sum_probs=95.9
Q ss_pred cccccccchhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 183 ILKELVGIDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
...++=|.+..+++|.+.+... -..++-|..+|++|.|||-+|++.+.+...-|- .
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL-----K-------- 235 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFL-----K-------- 235 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHH-----H--------
Confidence 3455667777777776655421 123456889999999999999998876544331 1
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH----cCCCCceEeccCCCHH----------------HHHHHHh
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL----RQKKVLLVIDDVADVE----------------QLQNLAR 311 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~~----------------~~~~l~~ 311 (1109)
+..--+-+ .-+.++...+++.+ ...+..|++|.++... ..-+|+.
T Consensus 236 ------LAgPQLVQ---------MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLN 300 (424)
T KOG0652|consen 236 ------LAGPQLVQ---------MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 300 (424)
T ss_pred ------hcchHHHh---------hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHH
Confidence 00000011 11112233333332 2467899999874321 1233445
Q ss_pred cCCCCCCC--cEEEEEeCCch-----hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHhC
Q 001277 312 KRDWFGPG--SKIVITTRDKQ-----LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTR-QPMGEYVELSKRVLKYAG 383 (1109)
Q Consensus 312 ~~~~~~~g--s~IiiTTR~~~-----v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~ 383 (1109)
.++.|.+. .+||-.|..-. ++..-+.+. .++.+--+++...+++.-|..+-. .+.-.++++++.--..-|
T Consensus 301 QLDGFss~~~vKviAATNRvDiLDPALlRSGRLDR--KIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNG 378 (424)
T KOG0652|consen 301 QLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDR--KIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNG 378 (424)
T ss_pred hhcCCCCccceEEEeecccccccCHHHhhcccccc--cccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCc
Confidence 55555543 45666554322 223323333 577766666666666666654322 233446666554322222
Q ss_pred CCchhHHHHhhhc
Q 001277 384 GLPLALTVLGSFL 396 (1109)
Q Consensus 384 GlPLal~~l~~~L 396 (1109)
.--.|+.+=|+++
T Consensus 379 AQcKAVcVEAGMi 391 (424)
T KOG0652|consen 379 AQCKAVCVEAGMI 391 (424)
T ss_pred hhheeeehhhhHH
Confidence 2233444444444
No 290
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.59 E-value=0.0059 Score=63.68 Aligned_cols=83 Identities=24% Similarity=0.271 Sum_probs=43.3
Q ss_pred CCCCCcEEeeecc--CCCcccCCCCCCCCCCcEEEecCCCCC--cccCcccCCCCCccEEecCCCcccCCC----ccccc
Q 001277 666 LLTGLQLLNLNNC--SNLVRLPSCINGLRSLKTLNLSGCSKL--QNVPETLGQVESLEELDISGTAIRRPP----SSIFV 737 (1109)
Q Consensus 666 ~l~~L~~L~L~~c--~~l~~lp~~i~~l~~L~~L~Ls~c~~l--~~lp~~l~~l~~L~~L~L~~~~i~~~p----~~l~~ 737 (1109)
.|++|+.|.++.| .....++....++++|++|++++|..- .++ ..+..+++|..|++..|..+.+. ..+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3556666666665 333334433444566666666666532 111 12344556666666666655542 12334
Q ss_pred cCCCcEEEccCC
Q 001277 738 MNNLKTLSFSGC 749 (1109)
Q Consensus 738 l~~L~~L~L~~c 749 (1109)
+++|++|+-..+
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 566666665443
No 291
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.59 E-value=0.017 Score=56.66 Aligned_cols=36 Identities=28% Similarity=0.179 Sum_probs=29.2
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..+|.|+|.+|.||||||+++.+++...-....++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999999987765555553
No 292
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.15 Score=52.57 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=37.7
Q ss_pred cccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 185 KELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
.++=|.|-..+++.+.... +-+.+|-|.++|++|.|||.||++|++.....|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 3455677766666655431 224567899999999999999999999665544
No 293
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.18 Score=57.65 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=22.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988754
No 294
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.53 E-value=0.17 Score=58.27 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=34.1
Q ss_pred chhhHHHHHhhhc-----ccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 190 IDSRLEKLRFLIA-----TESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 190 r~~~l~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
-.+.++++..||. ...-+.++..|+|++|.||||..+.++..+.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3455677778877 3344568999999999999999999887543
No 295
>PTZ00494 tuzin-like protein; Provisional
Probab=95.52 E-value=1.4 Score=49.91 Aligned_cols=198 Identities=14% Similarity=0.098 Sum_probs=105.0
Q ss_pred HhhccCccCCC--Cchhh-hHhhHHHHHhhhc-------cCCcccccccccchhhHHHHHhhhcc-cCCCeeEEEEEecC
Q 001277 149 VANKSGWELKD--SNESE-FIDEIVNVISNKI-------RTKPEILKELVGIDSRLEKLRFLIAT-ESSDVRMMGIWGMG 217 (1109)
Q Consensus 149 ~a~~~g~~~~~--~~e~~-~i~~iv~~i~~~l-------~~~~~~~~~~vGr~~~l~~l~~~L~~-~~~~~~vv~I~G~g 217 (1109)
++...||.+++ +.+.. -.+--++.+.+.. ...+.....+|.|+.+-..+.+.|.. +...+|++++.|.-
T Consensus 325 v~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~ 404 (664)
T PTZ00494 325 VAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGS 404 (664)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCC
Confidence 34446676665 21211 1233344444443 12345678899999998888877763 44578999999999
Q ss_pred CchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHH-------HHHcC
Q 001277 218 GLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIG-------SRLRQ 290 (1109)
Q Consensus 218 GiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~-------~~L~~ 290 (1109)
|.||++|.+....+-. -..+|+. ++. ..+++..+. ..+.-. .. .--.+..+.|. ....+
T Consensus 405 GcGKSslcRsAvrkE~---~paV~VD-VRg---~EDtLrsVV----KALgV~-nv--e~CGDlLdFI~ea~~~A~~~~~g 470 (664)
T PTZ00494 405 GGGRCVPCRRAVRVEG---VALVHVD-VGG---TEDTLRSVV----RALGVS-NV--EVCGDLLGFVEEAMRGATVKASD 470 (664)
T ss_pred CCCchHHHHHHHHHcC---CCeEEEE-ecC---CcchHHHHH----HHhCCC-Ch--hhhccHHHHHHHHHHHHHHhcCC
Confidence 9999999987665332 2345654 443 222233333 333310 00 11122333332 23345
Q ss_pred CCCceEeccC--CCHHH-HHHHHhcCCCCCCCcEEEEEeCCchhhHhh-CCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 291 KKVLLVIDDV--ADVEQ-LQNLARKRDWFGPGSKIVITTRDKQLLVAH-EVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 291 k~~LlVLDdv--~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
+.-+||+-== .+..- ..+.+ .+..--.-++|++----+.+.... ....-.-|.++.++.++|.++-.+..
T Consensus 471 ~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 471 GVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 6667776422 22221 11111 111113456777755444332211 11222269999999999999876554
No 296
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.035 Score=67.71 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=87.9
Q ss_pred ccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc-c-----ceEEeeechhhhcccCChHH
Q 001277 184 LKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF-D-----GSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~-----~~~~~~~~~~~~~~~~~~~~ 257 (1109)
-+..+||+.|+.++.+.|.....+-+ .++|.+|+|||++|.-++.++...= + ..++-.++..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~---------- 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS---------- 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH----------
Confidence 45689999999999999985433222 3679999999999999999875531 1 1122211111
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHHc-CCCCceEeccCCC-----------HHHHHHHHhcCCCCCCCcEEEEE
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRLR-QKKVLLVIDDVAD-----------VEQLQNLARKRDWFGPGSKIVIT 325 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiT 325 (1109)
+....... .+.++....+.+.++ .+++.|++|.+.. .+.-+-|.+.+. .|.--.|=-|
T Consensus 237 --------LvAGakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGAT 306 (786)
T COG0542 237 --------LVAGAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGAT 306 (786)
T ss_pred --------Hhcccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEec
Confidence 11111111 344444444444443 4589999998733 222333444432 1222344456
Q ss_pred eCCch---hhHhhCC-CccceEEcCCCCHHHHHHHHHHhh
Q 001277 326 TRDKQ---LLVAHEV-DEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 326 TR~~~---v~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
|-++. +...... .....+.|+..+.+++.+.++-..
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 65432 1111000 111278999999999999986543
No 297
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.51 E-value=0.019 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+|.++|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999887554
No 298
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.50 E-value=0.077 Score=58.04 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=25.7
Q ss_pred CCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 292 KVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 292 ~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
+-+||+|...+. .++..++.. .|+||||+.|--.
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~ 387 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDP 387 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCH
Confidence 579999999775 456666543 5899999998764
No 299
>PRK06762 hypothetical protein; Provisional
Probab=95.48 E-value=0.056 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.7
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.++|.|+|++|.||||+|+.+..++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999877
No 300
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.47 E-value=0.48 Score=50.04 Aligned_cols=227 Identities=15% Similarity=0.244 Sum_probs=119.0
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc------cccceEEeeechh------h----
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH------EFDGSTFLANVRE------K---- 248 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~------~---- 248 (1109)
..+.++++....+..+.. ..+.+-..++|+.|.||-|.+..+.+.+-. +-+...|...... .
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 446677777777776654 346778889999999999999888775421 1122233321111 0
Q ss_pred -----hcccCCh-HHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCC-ceEeccCCCH--HHHHHHHhcCCCCCCC
Q 001277 249 -----SEKEGSV-VSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKV-LLVIDDVADV--EQLQNLARKRDWFGPG 319 (1109)
Q Consensus 249 -----~~~~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~~--~~~~~l~~~~~~~~~g 319 (1109)
..+.|.. ..+.++++.++....... .-..+.| ++||-.++.. +...+|..........
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 0111101 122333444433211110 0012233 5666666554 2233333332223466
Q ss_pred cEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch-hHHHHhhh--
Q 001277 320 SKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL-ALTVLGSF-- 395 (1109)
Q Consensus 320 s~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l~~~-- 395 (1109)
+|+|+...+-. +...... ....+.+...+++|....++..+-++.-.. ..+++++|+++++|+-- ||-.+-..
T Consensus 158 ~RlIl~cns~SriIepIrS-RCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRS-RCLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred ceEEEEecCcccchhHHhh-heeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 78877554321 1111111 112689999999999999998875444322 36899999999999743 33222111
Q ss_pred ---c--CC---CCHHHHHHHHHHhh-----cCCCChhHHHHHhhhcC
Q 001277 396 ---L--NG---RSVDLWRSTLKRLK-----KEPPNRIINILQISFDG 429 (1109)
Q Consensus 396 ---L--~~---~~~~~w~~~l~~l~-----~~~~~~i~~~L~~sy~~ 429 (1109)
. ++ ...-+|+-++.+.. +..+..+.++-..-|+-
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeL 281 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYEL 281 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 0 11 24568988877643 33344444444444443
No 301
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.46 E-value=0.18 Score=56.83 Aligned_cols=46 Identities=22% Similarity=0.145 Sum_probs=34.7
Q ss_pred cccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 187 LVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 187 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+||....+.++.+.+..-...-.-|.|+|..|+||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4787777777766665333334568899999999999999988743
No 302
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.45 E-value=0.51 Score=54.52 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=24.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999998888766544
No 303
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.42 E-value=0.046 Score=62.39 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=34.6
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
.++.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455555433344579999999999999999999887765534444553
No 304
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.41 E-value=0.095 Score=52.16 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=37.5
Q ss_pred ccHHHHHHHHcCCCCceEecc----CCCHHHHHH--HHhcCCCCCCCcEEEEEeCCchhhHhhC
Q 001277 279 DGINIIGSRLRQKKVLLVIDD----VADVEQLQN--LARKRDWFGPGSKIVITTRDKQLLVAHE 336 (1109)
Q Consensus 279 ~~~~~l~~~L~~k~~LlVLDd----v~~~~~~~~--l~~~~~~~~~gs~IiiTTR~~~v~~~~~ 336 (1109)
+..-.|.+.+-+++-+|+-|. +|..-.|+- +...+ ...|..||++|-+.++...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence 344556666778999999994 555444443 23333 257999999999988766553
No 305
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.39 E-value=0.11 Score=53.28 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.9
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+|.|+|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998866
No 306
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.38 E-value=0.017 Score=67.69 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=42.1
Q ss_pred cccccchhhHHHHHhhhc----ccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 185 KELVGIDSRLEKLRFLIA----TESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.+++|.++.+++|...|. ......+++.++|++|+||||||+.+++.+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 468999999999998883 223456799999999999999999999866543
No 307
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.35 E-value=0.04 Score=61.12 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=34.2
Q ss_pred HHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 196 KLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 196 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
.|..+|. .+-+..+++-|+|++|+||||||..++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 4445554 34456689999999999999999888776655544455664
No 308
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.30 E-value=0.077 Score=57.78 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=59.0
Q ss_pred HHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcc
Q 001277 194 LEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADIS 273 (1109)
Q Consensus 194 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 273 (1109)
++.+..++.. ...+|.|.|..|.||||+++++.+.+...-...+.+.+-.+..- .+ . .++. ..
T Consensus 69 ~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~-~--------~q~~----v~ 131 (264)
T cd01129 69 LEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PG-I--------NQVQ----VN 131 (264)
T ss_pred HHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CC-c--------eEEE----eC
Confidence 3444444432 23589999999999999999988877542122233332211100 00 0 0000 00
Q ss_pred cccccccHHHHHHHHcCCCCceEeccCCCHHHHHHHHhc
Q 001277 274 IWNVDDGINIIGSRLRQKKVLLVIDDVADVEQLQNLARK 312 (1109)
Q Consensus 274 ~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~ 312 (1109)
..........++..|+..+=.|+++++.+.+....++..
T Consensus 132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 011123566778888888999999999998876654433
No 309
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.29 E-value=0.13 Score=62.70 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=40.0
Q ss_pred cccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 183 ILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
....++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999998887776433334567899999999999999998854
No 310
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.25 E-value=0.046 Score=60.63 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=35.0
Q ss_pred HHHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 195 EKLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 195 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..|..+|. .+-+..+++-|+|++|+||||||..++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34445554 34455689999999999999999988876655544566664
No 311
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.24 E-value=0.039 Score=69.24 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=38.7
Q ss_pred cccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 183 ILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
....++|+...+..+.+.+..-......|.|+|..|+|||++|+.+++.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999999888766665333334578899999999999999998754
No 312
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=2.9 Score=44.71 Aligned_cols=176 Identities=14% Similarity=0.149 Sum_probs=92.8
Q ss_pred ccccccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 182 EILKELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
......-|.+...+.|.+.... .....+-|.++|++|.||+.||++|+-....- |+...
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFSvS------ 198 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFSVS------ 198 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEEee------
Confidence 4456788999888888765431 12236789999999999999999999755432 33211
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH-cCCCCceEeccCCCH---------HHH-----HHHHhcCC--
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-RQKKVLLVIDDVADV---------EQL-----QNLARKRD-- 314 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~---------~~~-----~~l~~~~~-- 314 (1109)
-.++....+ ...+.++..+.+.. .+|+-+|++|.++.. +.- +.|+....
T Consensus 199 ---SSDLvSKWm-----------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 199 ---SSDLVSKWM-----------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred ---hHHHHHHHh-----------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc
Confidence 011111111 11122233333332 368899999999653 111 22222211
Q ss_pred CCCCCcEEEEEeCCchhhHhh---CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 315 WFGPGSKIVITTRDKQLLVAH---EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 315 ~~~~gs~IiiTTR~~~v~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
....|.-|+=.|.-+-++... +... .+.++.-+......+|.-+...... .--+...+++.++..|.-
T Consensus 265 ~d~~gvLVLgATNiPw~LDsAIRRRFek--RIYIPLPe~~AR~~MF~lhlG~tp~--~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 265 NDNDGVLVLGATNIPWVLDSAIRRRFEK--RIYIPLPEAHARARMFKLHLGDTPH--VLTEQDFKELARKTEGYS 335 (439)
T ss_pred cCCCceEEEecCCCchhHHHHHHHHhhc--ceeccCCcHHHhhhhheeccCCCcc--ccchhhHHHHHhhcCCCC
Confidence 113455556666665444332 2333 4444444444555677777643322 112233455556666543
No 313
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.17 E-value=0.017 Score=55.36 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.4
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 001277 211 MGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
|+|.|++|+||||+|+.+..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 314
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.14 E-value=0.05 Score=51.25 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=54.0
Q ss_pred cEEEccccccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccc
Q 001277 15 DAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKN 78 (1109)
Q Consensus 15 dvfis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~ 78 (1109)
.|||-|. +| ..+++.+...|+..|+.+.+-......|..+.+.+.+++.+++.+||+++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899997 66 3789999999998899887766677999999999999999999999999995
No 315
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.13 E-value=0.06 Score=53.36 Aligned_cols=88 Identities=24% Similarity=0.318 Sum_probs=46.5
Q ss_pred EEecCCchhHHHHHHHHHHHhccccceEEee---echhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHc
Q 001277 213 IWGMGGLGKTTLARVAYDLISHEFDGSTFLA---NVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 289 (1109)
Q Consensus 213 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 289 (1109)
|.|++|.||||+|+.++.++. | +.+. -++....... .+..++ .+....... .+.+-....+.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~s---~~g~~i-~~~l~~g~~--vp~~~v~~ll~~~l~ 69 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSDS---ELGKQI-QEYLDNGEL--VPDELVIELLKERLE 69 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTTS---HHHHHH-HHHHHTTSS----HHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhhh---HHHHHH-HHHHHhhcc--chHHHHHHHHHHHHh
Confidence 689999999999999998752 2 2232 1122211111 111222 222222222 223345566666665
Q ss_pred C--CCCceEeccC-CCHHHHHHHHh
Q 001277 290 Q--KKVLLVIDDV-ADVEQLQNLAR 311 (1109)
Q Consensus 290 ~--k~~LlVLDdv-~~~~~~~~l~~ 311 (1109)
. ..--+|||+. .+.+|.+.+..
T Consensus 70 ~~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 70 QPPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp SGGTTTEEEEESB-SSHHHHHHHHH
T ss_pred hhcccceeeeeeccccHHHHHHHHH
Confidence 3 3566889999 45566665544
No 316
>PRK04328 hypothetical protein; Provisional
Probab=95.12 E-value=0.11 Score=56.24 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=32.8
Q ss_pred HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 196 KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
.|.++|..+-....++.|.|.+|.|||+||.++.......-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455555444345679999999999999999887665433334455554
No 317
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.09 E-value=0.014 Score=54.56 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEecCCchhHHHHHHHHHHHhccccc
Q 001277 211 MGIWGMGGLGKTTLARVAYDLISHEFDG 238 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f~~ 238 (1109)
|.|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988877753
No 318
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.08 E-value=0.0038 Score=75.14 Aligned_cols=58 Identities=29% Similarity=0.340 Sum_probs=29.3
Q ss_pred CCCCCEEecCCCC-CCCCCcccccCCCCCCCEEeCCCCCCc---ccchhhhccCCCCceecc
Q 001277 784 LHSLSKLDLSDCG-LGEGAIPNDIGNLCSLKQLNLSQNNFV---TLPASINSLFNLGQLDLE 841 (1109)
Q Consensus 784 l~~L~~L~Ls~~~-l~~~~lp~~l~~l~~L~~L~Ls~n~l~---~lp~~~~~l~~L~~L~L~ 841 (1109)
+++|++|.+.+|. +++.++-.....+++|++|+|++|... .+......+++|+.|.+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 4566666655555 444444444455666666666665322 133333445554444433
No 319
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.07 Score=56.95 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=26.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
-+..++|||++|.|||-+|++|+..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 356899999999999999999999876654
No 320
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.02 E-value=0.021 Score=59.39 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=23.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+|+|.|.+|.||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988754
No 321
>PRK09354 recA recombinase A; Provisional
Probab=95.00 E-value=0.061 Score=60.17 Aligned_cols=49 Identities=24% Similarity=0.238 Sum_probs=35.2
Q ss_pred HHHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 195 EKLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 195 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..|..+|. .+-...+++-|+|++|.||||||..++......=..++|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34555565 34456789999999999999999888776655545566664
No 322
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.19 Score=57.55 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999998887664
No 323
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.91 E-value=0.062 Score=58.45 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=20.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
+.|.|+|.||.||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999987765
No 324
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.86 E-value=0.058 Score=61.35 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=64.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
...|.|.|+.|.||||+++++.+.+.......++... .. .+...... ..+....... .+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE--dp------~E~~~~~~-~~~i~q~evg-~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE--DP------IEYVHRNK-RSLINQREVG-LDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc--CC------hhhhccCc-cceEEccccC-CCCcCHHHHHHHh
Confidence 3689999999999999999998877655555544321 10 11000000 0000000110 1223456678888
Q ss_pred HcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 288 LRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
|+..+=.|++|.+.+.+.+...+... ..|..++.|.-..
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 99999999999999888766544331 3455555555443
No 325
>PRK15115 response regulator GlrR; Provisional
Probab=94.84 E-value=2.6 Score=50.04 Aligned_cols=48 Identities=19% Similarity=0.109 Sum_probs=33.6
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..++|....+.++......-...-..|.|.|.+|.|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888777766654443222233467799999999999999987743
No 326
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.84 E-value=0.15 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998775
No 327
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.81 E-value=0.099 Score=53.84 Aligned_cols=33 Identities=21% Similarity=0.063 Sum_probs=24.3
Q ss_pred EEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 211 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
+.|.|.+|+|||+||..++......=..+.|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999988775543333455553
No 328
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.81 E-value=0.037 Score=55.80 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
++.|.|.+|.||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999988764
No 329
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.46 Score=52.50 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=46.6
Q ss_pred hHHHHHhhhc--cCCcccccccccchhhHHHHHhhhccc----------CCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 168 EIVNVISNKI--RTKPEILKELVGIDSRLEKLRFLIATE----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 168 ~iv~~i~~~l--~~~~~~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.+|+.+..-. .++-...+++.|.+...+-|.+..... ...-+-|.++|++|.|||-||++||-....-
T Consensus 193 ~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 193 DLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred HHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 4555554433 344455678888887777776654311 1234678899999999999999999877643
No 330
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.79 E-value=0.089 Score=55.86 Aligned_cols=124 Identities=20% Similarity=0.198 Sum_probs=66.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeec--hhhhcccCChHHHHHHHHHHHhhcc------Cccccccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANV--REKSEKEGSVVSLQKQLLSDLLKLA------DISIWNVD 278 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~------~~~~~~~~ 278 (1109)
...+++|+|..|.||||+|+.+..-.... .+.+++..- .... ... ......+++..+.... ......-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~-~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEE-RRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhH-HHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45689999999999999999998755433 344444311 1100 111 2233444555443111 00001112
Q ss_pred ccHHHHHHHHcCCCCceEeccCCCH------HHHHHHHhcCCCCCCCcEEEEEeCCchhhHh
Q 001277 279 DGINIIGSRLRQKKVLLVIDDVADV------EQLQNLARKRDWFGPGSKIVITTRDKQLLVA 334 (1109)
Q Consensus 279 ~~~~~l~~~L~~k~~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 334 (1109)
...-.+.+.|.-++=++|.|.--+. .|.-.|+..+. ...|-..+..|-+-.+...
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhh
Confidence 2234456677889999999985322 33333333222 1346667777776665544
No 331
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.77 E-value=0.12 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAY 229 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~ 229 (1109)
...+++|+|+.|.|||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999885
No 332
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.72 E-value=0.039 Score=58.96 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=27.2
Q ss_pred CCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 205 SSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
.....+|+|.|+.|.|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 34678999999999999999999998776543
No 333
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.72 E-value=0.046 Score=58.73 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=27.7
Q ss_pred HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 196 KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.|..+|..+-....++.|+|.+|.|||+||..++...
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 3444554344456899999999999999999987543
No 334
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.68 E-value=0.026 Score=47.41 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+|+|.|.+|.||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 335
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.67 E-value=0.032 Score=64.59 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=39.3
Q ss_pred ccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 184 LKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...++||++.++.+...+..+ .-|.|.|++|+|||+||+.+......
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 457899999999988777654 34889999999999999999986643
No 336
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.062 Score=53.94 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+.|.+.|.+|+||||+|++++..+++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467889999999999999999876654
No 337
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.62 E-value=0.09 Score=51.58 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=55.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
...+++|+|..|.|||||++.++.... ...+.+++.......- +.+ + ..-+...-.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~----~~~--------l--------S~G~~~rv~lar 83 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGY----FEQ--------L--------SGGEKMRLALAK 83 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEE----Ecc--------C--------CHHHHHHHHHHH
Confidence 346899999999999999999887543 2344455432100000 000 0 111112223445
Q ss_pred HHcCCCCceEeccCC---CHH---HHHHHHhcCCCCCCCcEEEEEeCCchhh
Q 001277 287 RLRQKKVLLVIDDVA---DVE---QLQNLARKRDWFGPGSKIVITTRDKQLL 332 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~---~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 332 (1109)
.+..++=++++|+-. +.. .+..++... +..||++|.+....
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~ 130 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFL 130 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHH
Confidence 556677899999862 222 233333322 24688888776544
No 338
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.60 E-value=0.18 Score=51.17 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.9
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
++.++|++|.||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999877655
No 339
>PRK03839 putative kinase; Provisional
Probab=94.56 E-value=0.027 Score=57.77 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.|.|.|++|.||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999874
No 340
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.56 E-value=0.031 Score=58.81 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=23.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 341
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.55 E-value=0.11 Score=60.98 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=34.8
Q ss_pred HHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 194 LEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 194 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
+..+.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555556544345679999999999999999999887764323345553
No 342
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.53 E-value=0.024 Score=52.45 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.1
Q ss_pred EEEEecCCchhHHHHHHHHHHHhccc
Q 001277 211 MGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
|-|+|.+|+|||+||+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999988776544
No 343
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.0021 Score=66.81 Aligned_cols=14 Identities=50% Similarity=0.546 Sum_probs=6.1
Q ss_pred CCCCCCCEEeCCCC
Q 001277 807 GNLCSLKQLNLSQN 820 (1109)
Q Consensus 807 ~~l~~L~~L~Ls~n 820 (1109)
.++|+|+.|.|..|
T Consensus 85 knlpsLr~LWL~EN 98 (388)
T KOG2123|consen 85 KNLPSLRTLWLDEN 98 (388)
T ss_pred hcCchhhhHhhccC
Confidence 34444444444443
No 344
>PRK08233 hypothetical protein; Provisional
Probab=94.50 E-value=0.028 Score=57.65 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.1
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|.|.+|.||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999988664
No 345
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.1 Score=54.17 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=38.9
Q ss_pred cccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeee
Q 001277 185 KELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLAN 244 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 244 (1109)
.+.=|-.+++++|.+.... +-+..+-|.++|++|.|||-+|++|+++.. .+|+..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfirv 242 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRV 242 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEee
Confidence 3455667777777665431 123456788999999999999999999764 456653
No 346
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.47 E-value=0.27 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 34678999999999999998875
No 347
>PRK00625 shikimate kinase; Provisional
Probab=94.44 E-value=0.029 Score=56.73 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.|.|+||+|+||||+|+.++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 348
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.44 E-value=0.12 Score=60.89 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=35.8
Q ss_pred hHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 193 RLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 193 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
-+..+...|..+-....++.|.|.+|+|||||+.+++......-..+.|+.
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345566666544445679999999999999999998876655423345553
No 349
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.43 E-value=0.13 Score=56.63 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=24.1
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++++|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999998876654
No 350
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.41 E-value=0.08 Score=56.16 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCCceEecc----CCCH--HHHHHHHhcCCCCCCCcEEEEEeCCchhhH
Q 001277 281 INIIGSRLRQKKVLLVIDD----VADV--EQLQNLARKRDWFGPGSKIVITTRDKQLLV 333 (1109)
Q Consensus 281 ~~~l~~~L~~k~~LlVLDd----v~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 333 (1109)
.-.+.+.|..++=|++||. ||.. ..+-.++..+. ..|..||+.|-|-+...
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhH
Confidence 3455677888999999996 3333 33445555443 33889999999866443
No 351
>PTZ00301 uridine kinase; Provisional
Probab=94.40 E-value=0.036 Score=57.93 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
..+|+|.|.+|.||||||+.+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775544
No 352
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.89 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.2
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
-..|+|+|+.|+||+||.+.+.-
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhc
Confidence 35689999999999999998875
No 353
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.23 Score=59.10 Aligned_cols=174 Identities=22% Similarity=0.288 Sum_probs=91.9
Q ss_pred cccccccchhhHHHHHhhhc---cc-------CCCeeEEEEEecCCchhHHHHHHHHHHHhcccc---ceEEeeechhhh
Q 001277 183 ILKELVGIDSRLEKLRFLIA---TE-------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD---GSTFLANVREKS 249 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~ 249 (1109)
...+.-|.|+..+++.+.+. .+ ..-++-|.++|++|.|||.||++++....-.|- +..|+.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe------ 221 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE------ 221 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh------
Confidence 34567788877777665554 11 122566899999999999999999985543331 011110
Q ss_pred cccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----------------HHHHHHhcC
Q 001277 250 EKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----------------QLQNLARKR 313 (1109)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~ 313 (1109)
+.- + .......+...+..++-++.|++|.++... .+..++...
T Consensus 222 ----------------mfV--G---vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEm 280 (596)
T COG0465 222 ----------------MFV--G---VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM 280 (596)
T ss_pred ----------------hhc--C---CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhh
Confidence 000 0 011111122233334568899999875421 366677766
Q ss_pred CCCCC--CcEEEEEeCCchhh-Hhh----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 314 DWFGP--GSKIVITTRDKQLL-VAH----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 314 ~~~~~--gs~IiiTTR~~~v~-~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
+.++. |-.||-.|...+|+ .+. +.+. .+.++..+-..-.+.+.-|+-...-. ...++ +.|++.+-|.-
T Consensus 281 DGF~~~~gviviaaTNRpdVlD~ALlRpgRFDR--qI~V~~PDi~gRe~IlkvH~~~~~l~--~~Vdl-~~iAr~tpGfs 355 (596)
T COG0465 281 DGFGGNEGVIVIAATNRPDVLDPALLRPGRFDR--QILVELPDIKGREQILKVHAKNKPLA--EDVDL-KKIARGTPGFS 355 (596)
T ss_pred ccCCCCCceEEEecCCCcccchHhhcCCCCcce--eeecCCcchhhHHHHHHHHhhcCCCC--CcCCH-HHHhhhCCCcc
Confidence 66663 32333333323332 222 2333 56677777677777777666332221 11122 22666666654
Q ss_pred hh
Q 001277 387 LA 388 (1109)
Q Consensus 387 La 388 (1109)
.|
T Consensus 356 GA 357 (596)
T COG0465 356 GA 357 (596)
T ss_pred cc
Confidence 43
No 354
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.34 E-value=0.12 Score=54.74 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 001277 211 MGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998865
No 355
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.34 E-value=0.12 Score=54.65 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 194 LEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 194 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..++.+.+.....+..+|+|+|+||.|||||..++...+...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 334444444444567899999999999999999888876653
No 356
>PRK14527 adenylate kinase; Provisional
Probab=94.33 E-value=0.14 Score=53.10 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...+|.|.|++|.||||+|+.++.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987653
No 357
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.32 E-value=0.052 Score=51.82 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=28.6
Q ss_pred hHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 193 RLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 193 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+..++.+.+...-....+|.+.|.-|.||||+++.++..+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 33444444432222346899999999999999999998653
No 358
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.31 E-value=0.31 Score=56.82 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.7
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.++++++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988887665
No 359
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.13 Score=54.18 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=40.7
Q ss_pred cccccccchhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 183 ILKELVGIDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
...++=|.+..+++|.+..... -..++-|.++|.+|.|||-||++|+|..+.-|
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3455667888888887765422 12345678999999999999999999776655
No 360
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.29 E-value=0.039 Score=57.95 Aligned_cols=28 Identities=39% Similarity=0.573 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
....+|+|+|++|.||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999998664
No 361
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.27 E-value=0.082 Score=62.71 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 205 SSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.+.-++..++|++|+||||||..++++-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc
Confidence 3456899999999999999999998743
No 362
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.36 Score=56.77 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..++|+|+|.+|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999888766544
No 363
>PRK04040 adenylate kinase; Provisional
Probab=94.26 E-value=0.043 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=23.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|+|+|++|.||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999875
No 364
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.26 E-value=0.06 Score=59.73 Aligned_cols=90 Identities=23% Similarity=0.261 Sum_probs=55.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccc--cceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEF--DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
+.+.|.|..|.||||+++++.+.+.... ...+.+.+..+..-....... + . .. .......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~-~-~~---~~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------L-R-TS---DDAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------E-E-ec---CCCCCHHHHHHH
Confidence 4678999999999999999998876532 223333332221110000000 0 0 00 111255677888
Q ss_pred HHcCCCCceEeccCCCHHHHHHHHh
Q 001277 287 RLRQKKVLLVIDDVADVEQLQNLAR 311 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~~~~~~l~~ 311 (1109)
.|+..+=.||+..+.+.+.++.+..
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~a 224 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLKA 224 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHHH
Confidence 8998999999999998887665433
No 365
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.37 Score=54.73 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=25.1
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
..++++++|+.|+||||++..++.+....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 357999999999999999999998765443
No 366
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.25 E-value=0.094 Score=56.88 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.|.++|++|.||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 367
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.24 E-value=0.068 Score=57.93 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=27.2
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..|..+|..+-....+.=|+|.+|+|||+||..++-..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 35555664333344688899999999999998877543
No 368
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.24 E-value=0.14 Score=56.39 Aligned_cols=125 Identities=19% Similarity=0.148 Sum_probs=69.2
Q ss_pred ccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHH
Q 001277 186 ELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSD 265 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 265 (1109)
.+.-.....+.+.++|...-...+.|.|.|..|.||||+++++...+...-...+-+.+..+..-. .
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~-------------~ 171 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP-------------G 171 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S-------------C
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec-------------c
Confidence 333333334455555543323357899999999999999999998776651222333322221100 0
Q ss_pred HhhccCccc-ccccccHHHHHHHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEE-EEEeCC
Q 001277 266 LLKLADISI-WNVDDGINIIGSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKI-VITTRD 328 (1109)
Q Consensus 266 l~~~~~~~~-~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~I-iiTTR~ 328 (1109)
.. ...... .+.......++..|+..+=.||++.+.+.+..+.+... ..|..+ +-|.-.
T Consensus 172 ~~-~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 172 PN-QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp SS-EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred cc-eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 00 000000 13345677788889988999999999988887774433 467677 444443
No 369
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.05 Score=56.14 Aligned_cols=30 Identities=37% Similarity=0.493 Sum_probs=26.8
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988765
No 370
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.22 E-value=0.12 Score=56.18 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=63.7
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHh--hccCc-----ccccccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL--KLADI-----SIWNVDD 279 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~~~~-----~~~~~~~ 279 (1109)
+..-++|+|..|.|||||.+.++..+... .+.+++....- . ......++..... .+... ...+...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~v-~-----~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKKV-G-----IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEEe-e-----cchhHHHHHHHhcccccccccccccccccchH
Confidence 45789999999999999999999877543 33333321000 0 0000111111111 00000 0011111
Q ss_pred cHHHHHHHH-cCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhh
Q 001277 280 GINIIGSRL-RQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLL 332 (1109)
Q Consensus 280 ~~~~l~~~L-~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 332 (1109)
...+...+ ...+=++++|.+...+.+..+..... .|..||+||-+..+.
T Consensus 183 -~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 183 -AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred -HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 11222222 35788999999988887777766542 578899999876553
No 371
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.21 E-value=0.13 Score=52.58 Aligned_cols=123 Identities=24% Similarity=0.321 Sum_probs=61.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeec--hhhhc-c-cCChHHHHHHHHHHHhhc--cCcccccc---
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANV--REKSE-K-EGSVVSLQKQLLSDLLKL--ADISIWNV--- 277 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~-~-~~~~~~l~~~ll~~l~~~--~~~~~~~~--- 277 (1109)
...+++|.|..|.|||||++.++.... ...+.+++... ..... . ...+. ...+++..+.-. ........
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~-~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIA-YVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHh-HHHHHHHHcCCHhHhcCCcccCCHH
Confidence 346899999999999999999987543 34555655421 10000 0 00011 111123332200 01000111
Q ss_pred cccHHHHHHHHcCCCCceEeccCC---CHHH---HHHHHhcCCCCCCCcEEEEEeCCchhh
Q 001277 278 DDGINIIGSRLRQKKVLLVIDDVA---DVEQ---LQNLARKRDWFGPGSKIVITTRDKQLL 332 (1109)
Q Consensus 278 ~~~~~~l~~~L~~k~~LlVLDdv~---~~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~ 332 (1109)
+...-.+.+.+...+-++++|+-- +.+. +..++..... ..|..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHH
Confidence 122233445566788899999862 2222 3233322211 1267888888876643
No 372
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.19 E-value=0.14 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+++|+|..|.|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 373
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.16 E-value=0.038 Score=56.15 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...|.|+|++|.||||+|++++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999874
No 374
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.14 E-value=0.055 Score=55.74 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=53.6
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccC-cccccccccHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLAD-ISIWNVDDGINIIGS 286 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~~l~~ 286 (1109)
...++|+|..|.||||+++++...+... ...+.+.+..+...... .. .++..... ..........+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP-------NW-VRLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC-------CE-EEEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999998876533 23333332211110000 00 00000000 000112234566677
Q ss_pred HHcCCCCceEeccCCCHHHHHHHHh
Q 001277 287 RLRQKKVLLVIDDVADVEQLQNLAR 311 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~~~~~~l~~ 311 (1109)
.++..+=.++++.+.+.+.++.+..
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHHH
Confidence 7888888999999998877665443
No 375
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.12 E-value=0.19 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.|.|.|++|.||||+|+.++.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999887653
No 376
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.22 Score=50.47 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=27.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...+++|.|..|.|||||.+.++.... ...+.+++.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~ 62 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILID 62 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEEC
Confidence 346899999999999999999987543 234555553
No 377
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.37 Score=54.27 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..++++|+|+.|+||||++..++.....+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~ 233 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999888766443
No 378
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.23 Score=55.55 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=55.5
Q ss_pred HHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhh-ccCc
Q 001277 194 LEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLK-LADI 272 (1109)
Q Consensus 194 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~ 272 (1109)
+.++...|-.+--...+|.|-|-+|||||||..+++.+++.+- .+.++. .+ .. ..++ +--..++.- ..+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GE----ES-~~Qi-klRA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GE----ES-LQQI-KLRADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CC----cC-HHHH-HHHHHHhCCCccce
Confidence 3455555543223456899999999999999999999998776 455553 11 11 2211 111223321 1111
Q ss_pred ccccccccHHHHHHHHc-CCCCceEeccCCC
Q 001277 273 SIWNVDDGINIIGSRLR-QKKVLLVIDDVAD 302 (1109)
Q Consensus 273 ~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~ 302 (1109)
. .-.+...+.|.+.+. .++-++|+|-+..
T Consensus 150 ~-l~aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 150 Y-LLAETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred E-EehhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 1 122233444444443 5788999998743
No 379
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.02 E-value=0.1 Score=52.44 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=59.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
...+++|.|..|.|||||.+.++.... ...+.+++....- . ... .....+ ..+.-.... ..-+...-.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~-~-~~~-~~~~~~---~~i~~~~qL--S~G~~qrl~lar 95 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEV-S-FAS-PRDARR---AGIAMVYQL--SVGERQMVEIAR 95 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEC-C-cCC-HHHHHh---cCeEEEEec--CHHHHHHHHHHH
Confidence 346899999999999999999886543 3455566542110 0 000 100000 001100000 111122334445
Q ss_pred HHcCCCCceEeccCC---CHHH---HHHHHhcCCCCCCCcEEEEEeCCchhh
Q 001277 287 RLRQKKVLLVIDDVA---DVEQ---LQNLARKRDWFGPGSKIVITTRDKQLL 332 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~---~~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~ 332 (1109)
.+..++-++++|+-- +... +..++..+. ..|..||++|.+....
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~ 145 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEV 145 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHH
Confidence 566778899999862 2222 222222221 2467888888886643
No 380
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.02 E-value=0.13 Score=52.33 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=25.7
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
..+++|+|..|.|||||++.++..... ..+.+.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 58 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEW 58 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEE
Confidence 468999999999999999998864432 3444544
No 381
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.99 E-value=0.2 Score=50.19 Aligned_cols=118 Identities=12% Similarity=-0.001 Sum_probs=57.7
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEeeechhhhcccCChHHHHHHHHHHHh--h-ccC--ccccc-----
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVSLQKQLLSDLL--K-LAD--ISIWN----- 276 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~-~~~--~~~~~----- 276 (1109)
..+|-|++-.|.||||.|..++-+...+ +.. +++.-+... ...+ -....+.+ .+. . ... ....+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v-~ivQFlKg~-~~~G-E~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKV-GVIQFIKGA-WPNG-ERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeE-EEEEEecCC-cccC-hHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 3577888889999999998877655433 332 222111111 1112 11222221 111 0 000 00001
Q ss_pred --ccccHHHHHHHHcC-CCCceEeccCCCHH-----HHHHHHhcCCCCCCCcEEEEEeCCch
Q 001277 277 --VDDGINIIGSRLRQ-KKVLLVIDDVADVE-----QLQNLARKRDWFGPGSKIVITTRDKQ 330 (1109)
Q Consensus 277 --~~~~~~~l~~~L~~-k~~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IiiTTR~~~ 330 (1109)
..+.....++.+.. +-=|+|||.+-..- ..+.+...+....++..||+|-|+..
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 12233444455544 34599999974221 12233333333467889999999864
No 382
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.97 E-value=0.38 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+..|+|+||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999887654
No 383
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.96 E-value=0.12 Score=61.67 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=37.8
Q ss_pred hHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 193 RLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 193 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
-+..+.++|..+-....++.|.|.+|+||||||.+++.....+=+.++++.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345666777655556789999999999999999998887655544555554
No 384
>PRK14528 adenylate kinase; Provisional
Probab=93.91 E-value=0.27 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+.|.|.|++|.||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999988765
No 385
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.90 E-value=0.19 Score=66.36 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+-|.++|++|.|||.||+++|....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 456789999999999999999998543
No 386
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.89 E-value=1.2 Score=53.90 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=36.7
Q ss_pred cccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHH
Q 001277 183 ILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
....++|....+.++...+..-...-..|.|+|..|.||+++|+++...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 4567999999888777666422222345889999999999999997653
No 387
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.89 E-value=0.047 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+.++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 388
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=0.28 Score=50.27 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=58.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcc---c-cceEEeeechhhhccc-CChHHHHHHHHHHHhhccCcccccccccHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHE---F-DGSTFLANVREKSEKE-GSVVSLQKQLLSDLLKLADISIWNVDDGIN 282 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---f-~~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 282 (1109)
..-..|.|++|+|||||.+.+++-++.. | +..+-+.+-+...... ....+.....--+++. ......-
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld-------~cpk~~g 209 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLD-------PCPKAEG 209 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcc-------cchHHHH
Confidence 3447799999999999999999866554 3 3333333222211110 0011111111111111 1111111
Q ss_pred HHHHHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 001277 283 IIGSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRD 328 (1109)
Q Consensus 283 ~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~ 328 (1109)
++...-...+=++|+|.+-..++..++.... ..|.++|.|.--
T Consensus 210 mmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 210 MMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 1111223457799999998887766666553 578787777653
No 389
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.84 E-value=0.17 Score=58.66 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=52.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHh-hccCcc--cccc------
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADIS--IWNV------ 277 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~--~~~~------ 277 (1109)
....++|.|.+|+|||||+..++.....+....+.+..+.+.... +..+.++++..-. ...-.. ..+.
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rE---v~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 346799999999999999999888776554444444444332211 3334444332210 000000 0010
Q ss_pred --cccHHHHHHHH---cCCCCceEeccCCCHH
Q 001277 278 --DDGINIIGSRL---RQKKVLLVIDDVADVE 304 (1109)
Q Consensus 278 --~~~~~~l~~~L---~~k~~LlVLDdv~~~~ 304 (1109)
......+.+++ +++++||++|++-...
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 01122344555 5789999999985543
No 390
>PRK13947 shikimate kinase; Provisional
Probab=93.79 E-value=0.045 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987543
No 391
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.79 E-value=0.63 Score=59.61 Aligned_cols=193 Identities=17% Similarity=0.189 Sum_probs=95.8
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccc----cceEEeeechhhhcccCChH--HHHHHHHHHHhhccCcccccccccHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEF----DGSTFLANVREKSEKEGSVV--SLQKQLLSDLLKLADISIWNVDDGIN 282 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~~--~l~~~ll~~l~~~~~~~~~~~~~~~~ 282 (1109)
.-+.|+|-+|.||||+.+.++-...... +..+++. +........... .+...+...+... ........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~-----~~~~~~~~ 296 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQ-----GIAKQLIE 296 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhcc-----CCcchhhH
Confidence 3688999999999999988876443322 2223332 111111000011 1222222222111 11222233
Q ss_pred HHHHHHcCCCCceEeccCCCHHH---------HHHHHhcCCCCCCCcEEEEEeCCchhhHhhCCCccceEEcCCCCHHHH
Q 001277 283 IIGSRLRQKKVLLVIDDVADVEQ---------LQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEVLSNDEA 353 (1109)
Q Consensus 283 ~l~~~L~~k~~LlVLDdv~~~~~---------~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea 353 (1109)
...+.+...++|+.+|.++.... +..+.+. -+.+++|+|+|....-.....-. .+++..+.++.-
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~--~~ei~~~~~~~i 370 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFA--VFEIYKFLDLQI 370 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhh--hccchhhhHHHH
Confidence 33577889999999999977542 2222322 35889999999765433222111 455555555544
Q ss_pred HHHHH--------HhhhcCCCCC-chHH----HHHHHHHHHhCCCchhHHHHhhhcC------CCCHHHHHHHHHHhhc
Q 001277 354 LQLFS--------MKAFKTRQPM-GEYV----ELSKRVLKYAGGLPLALTVLGSFLN------GRSVDLWRSTLKRLKK 413 (1109)
Q Consensus 354 ~~Lf~--------~~af~~~~~~-~~~~----~~~~~i~~~~~GlPLal~~l~~~L~------~~~~~~w~~~l~~l~~ 413 (1109)
.+... ...++..... ..+. .-..+-++.....|++|...+..-. ....+-++.+++.+-.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 371 NQFILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 43222 1122211111 0010 1122333444788999888874332 2345566666665544
No 392
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.74 E-value=0.3 Score=53.74 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=27.1
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcccc-ceEEe
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFD-GSTFL 242 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~ 242 (1109)
...++.|.|.+|+||||+|.+++.....+.. .++|+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i 65 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI 65 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE
Confidence 4568899999999999999998876654433 34444
No 393
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.73 E-value=0.082 Score=53.86 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=24.2
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..+|+|+|++|.||||+|+.++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998754
No 394
>PHA02244 ATPase-like protein
Probab=93.67 E-value=0.11 Score=58.24 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=34.1
Q ss_pred ccccccccchhhHHH----HHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 182 EILKELVGIDSRLEK----LRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~----l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.....++|....+.. +..++..+ .-|.|+|++|+|||+||+++++.....
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 344567786665543 34444322 347789999999999999999876433
No 395
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.64 Score=52.84 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
|--.++|+||.|||++..++++.+.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999998664
No 396
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.66 E-value=0.24 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.7
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 001277 211 MGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999988754
No 397
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.64 E-value=0.14 Score=61.64 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=41.3
Q ss_pred cccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 183 ILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
....++|....+.++.+.+..-......|.|+|..|+|||++|+.+.+.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 356799999999988887765444456788999999999999999988543
No 398
>PRK08356 hypothetical protein; Provisional
Probab=93.60 E-value=0.2 Score=51.94 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.1
Q ss_pred eEEEEEecCCchhHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAY 229 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~ 229 (1109)
.+|+|.|++|.||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999983
No 399
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.60 E-value=0.48 Score=58.43 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.++++++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 57999999999999999988887663
No 400
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.59 E-value=0.3 Score=49.66 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=59.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEeeechhhhcccCChHHHHHHHHHHHh-----hccCccc------
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-----KLADISI------ 274 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-----~~~~~~~------ 274 (1109)
....|-|+|-.|-||||.|..++-+...+ +. +.++.-+... ...+ -....+.+ ..+. .......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~-V~ivQFlKg~-~~~G-E~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKK-VGVVQFIKGA-WSTG-ERNLLEFG-GGVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCe-EEEEEEecCC-CccC-HHHHHhcC-CCcEEEECCCCCcccCCCcHHH
Confidence 34689999999999999998877655443 32 2222212211 0112 11111111 0010 0000000
Q ss_pred -ccccccHHHHHHHHcC-CCCceEeccCCCHH-----HHHHHHhcCCCCCCCcEEEEEeCCch
Q 001277 275 -WNVDDGINIIGSRLRQ-KKVLLVIDDVADVE-----QLQNLARKRDWFGPGSKIVITTRDKQ 330 (1109)
Q Consensus 275 -~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IiiTTR~~~ 330 (1109)
..........++.+.. +-=|+|||.+-..- ..+.+...+....++..||+|-|+..
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1111233444444444 44599999984322 12333333333467889999999864
No 401
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.57 E-value=0.17 Score=54.97 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=34.9
Q ss_pred HHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 197 LRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
|..+|..+-+..+++=|+|+.|.||||+|.+++-.....-..++|+.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 33444434456788999999999999999888776665555778886
No 402
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.52 Score=58.78 Aligned_cols=104 Identities=13% Similarity=0.219 Sum_probs=62.5
Q ss_pred cccccchhhHHHHHhhhcc---cCC---CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHH
Q 001277 185 KELVGIDSRLEKLRFLIAT---ESS---DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSL 258 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~---~~~---~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 258 (1109)
...+|.+..+..|.+.+.. +.. ..-...+.|+.|+|||.||++++.-+-+..+..+-+. +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 3467777777777666652 111 3456778999999999999999998755554444332 2222
Q ss_pred HHHHHHHHh-hccCcccccccccHHHHHHHHcCCCC-ceEeccCCCHH
Q 001277 259 QKQLLSDLL-KLADISIWNVDDGINIIGSRLRQKKV-LLVIDDVADVE 304 (1109)
Q Consensus 259 ~~~ll~~l~-~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~~~ 304 (1109)
+. .+++. ...+. --.+....+.+.++.++| +|.||||+..+
T Consensus 631 ~e--vskligsp~gy---vG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGY---VGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hh--hhhccCCCccc---ccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 22 22222 21111 112334577778888775 67789997643
No 403
>PRK06547 hypothetical protein; Provisional
Probab=93.55 E-value=0.067 Score=54.09 Aligned_cols=27 Identities=33% Similarity=0.233 Sum_probs=23.9
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
....+|+|.|++|.||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998864
No 404
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.54 E-value=0.058 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
++|.+.|++|.||||+|+++......
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58999999999999999999887543
No 405
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.53 E-value=0.098 Score=54.50 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=28.7
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
....+|+|+|++|.||||||+.+...+...-.+.+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3467999999999999999999999775442334555
No 406
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=0.0054 Score=63.96 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch--hhhccCCCCceeccCCcCcCcCC
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA--SINSLFNLGQLDLEDCKRLQSMP 850 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~~~~l~~L~~L~L~~c~~L~~lp 850 (1109)
...++.|+.|.||-|.++. + ..+..+++|++|.|..|.|.++.. .+.++++|+.|.|..|+....-+
T Consensus 37 c~kMp~lEVLsLSvNkIss--L-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISS--L-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHhcccceeEEeecccccc--c-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 4567889999999999854 2 347789999999999999988763 57899999999999999877655
No 407
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.41 E-value=0.28 Score=59.24 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=36.0
Q ss_pred hhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc-cceEEee
Q 001277 192 SRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLA 243 (1109)
Q Consensus 192 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~ 243 (1109)
.-+..|.+.|..+-...+++.|.|.+|+|||+||.+++.....++ ..+.|+.
T Consensus 15 TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 15 TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred CCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 334456566654445678999999999999999998876555443 3445553
No 408
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.39 E-value=0.95 Score=53.30 Aligned_cols=46 Identities=28% Similarity=0.276 Sum_probs=33.3
Q ss_pred cccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 187 LVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 187 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..|...-...|.+++. +-....++.|.|.+|+|||++|..++....
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a 219 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVA 219 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4455555566666554 334456899999999999999999886654
No 409
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.37 E-value=0.08 Score=60.15 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=36.9
Q ss_pred cccccchhhHHHHHhhhccc------------CCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 185 KELVGIDSRLEKLRFLIATE------------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
.++||.+.....+...+... ....+-|.++|++|+|||++|++++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45777777776665444321 11246788999999999999999999876544
No 410
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.37 E-value=0.17 Score=57.71 Aligned_cols=106 Identities=22% Similarity=0.183 Sum_probs=61.1
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcccc-ceEE-eeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFD-GSTF-LANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~-~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
..|.|.|+.|.||||+++++.+.+....+ ..++ +.+-.+..-. + ...+....-.++. .+.......++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~-~~~~~~~~q~evg-------~~~~~~~~~l~~ 220 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-S-PDDLLPPAQSQIG-------RDVDSFANGIRL 220 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-C-CceeecccccccC-------CCccCHHHHHHH
Confidence 47889999999999999999887754432 2333 2211111000 0 0000000000110 223345677888
Q ss_pred HHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeC
Q 001277 287 RLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTR 327 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR 327 (1109)
.|+..+=.|+++.+.+.+.++..+... ..|-. ++||=
T Consensus 221 aLR~~PD~I~vGEiRd~et~~~al~aa---~TGH~-v~tTl 257 (372)
T TIGR02525 221 ALRRAPKIIGVGEIRDLETFQAAVLAG---QSGHF-CLGTL 257 (372)
T ss_pred hhccCCCEEeeCCCCCHHHHHHHHHHH---hcCCc-EEEee
Confidence 899999999999999998877544331 34544 45553
No 411
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.37 E-value=0.25 Score=50.42 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=26.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
...+++|.|..|.|||||++.++..... ..+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITL 61 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEE
Confidence 3468999999999999999999875432 2344444
No 412
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.36 E-value=0.085 Score=53.87 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=22.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 413
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.36 E-value=0.79 Score=54.98 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=38.2
Q ss_pred ccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHH
Q 001277 184 LKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
...++|....+.++.+.+..-...-.-|.|.|..|.||+++|+.+++.
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 345899999998887777533333457889999999999999999874
No 414
>PRK14529 adenylate kinase; Provisional
Probab=93.36 E-value=0.29 Score=51.51 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=47.7
Q ss_pred EEEEecCCchhHHHHHHHHHHHhccc-cceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHc
Q 001277 211 MGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR 289 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 289 (1109)
|.|.|++|.||||+|+.++.++.-.+ .....+ ++.......+....+ ++...... ...+-....+.+++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~----~~i~~G~l--vpdei~~~lv~~~l~ 73 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAK----EYIDRGDL--VPDDITIPMILETLK 73 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHH----HHHhccCc--chHHHHHHHHHHHHh
Confidence 77899999999999999988764322 111111 111111111222222 22222222 233345566677775
Q ss_pred CC-CCceEeccC-CCHHHHHHH
Q 001277 290 QK-KVLLVIDDV-ADVEQLQNL 309 (1109)
Q Consensus 290 ~k-~~LlVLDdv-~~~~~~~~l 309 (1109)
+. .-=+|||+. .+.+|.+.|
T Consensus 74 ~~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 74 QDGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred ccCCCcEEEeCCCCCHHHHHHH
Confidence 32 345899998 455665554
No 415
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.35 E-value=0.7 Score=45.04 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=31.1
Q ss_pred HHHHHHHHhcceEEEEeccccccchhhHHHHHHHHHhccCCceEEeEEeecc
Q 001277 59 PNLLEAIEESRISIIVLSKNYASSTWCLDELVKIVECKKRDHEIFPIFYDVE 110 (1109)
Q Consensus 59 ~~l~~~i~~s~~~ivv~S~~y~~s~~c~~El~~~~~~~~~~~~v~pv~~~v~ 110 (1109)
.++.++|+.++..|+|+......+.+. .++.+.+.....+..++.|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVDPRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhccCCCcEEEEEechh
Confidence 468899999999999998655444442 245555443312334666664443
No 416
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.33 E-value=0.76 Score=55.07 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=37.6
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..++|....+.++...+..-...-..|.|+|.+|.|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 468999988888776665333344568899999999999999988743
No 417
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.33 E-value=0.085 Score=64.26 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=54.7
Q ss_pred CCcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEeeechhhhcccCChHH
Q 001277 179 TKPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 179 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
.+|....+++|.+..++.|...+... +.+.++|.+|.||||+|+.+++.+... ++...|+.+ .......
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n------p~~~~~~ 94 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN------PEDPNNP 94 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC------CCcchHH
Confidence 34556778999999888888776533 468899999999999999999876433 455666654 1112445
Q ss_pred HHHHHHHHHh
Q 001277 258 LQKQLLSDLL 267 (1109)
Q Consensus 258 l~~~ll~~l~ 267 (1109)
+.+.+..+++
T Consensus 95 ~~~~v~~~~G 104 (637)
T PRK13765 95 KIRTVPAGKG 104 (637)
T ss_pred HHHHHHHhcC
Confidence 5555555443
No 418
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=1.2 Score=53.67 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=37.9
Q ss_pred cCCccccc-ccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 178 RTKPEILK-ELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 178 ~~~~~~~~-~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+..|.+.. ++=|.++-..+|.+-+.. +-.+..=|.++|++|.|||-||++|+-..+=.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee
Confidence 34555544 444566666666555442 11223468899999999999999999866543
No 419
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.28 E-value=0.12 Score=50.91 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=26.8
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFD 237 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1109)
...+|.++|++|.||||+|.+++.++...--
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999998876543
No 420
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.27 E-value=0.026 Score=35.30 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=10.3
Q ss_pred CCEEeCCCCCCcccchhh
Q 001277 812 LKQLNLSQNNFVTLPASI 829 (1109)
Q Consensus 812 L~~L~Ls~n~l~~lp~~~ 829 (1109)
|++|+|++|+++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 555666666555555544
No 421
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.21 E-value=0.25 Score=57.61 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=27.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccc-cceEEe
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEF-DGSTFL 242 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~ 242 (1109)
....++|.|.+|+|||||+.++++....+. +.++|.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~ 178 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA 178 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE
Confidence 346799999999999999999888776443 444443
No 422
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.09 E-value=0.13 Score=56.94 Aligned_cols=59 Identities=25% Similarity=0.223 Sum_probs=40.1
Q ss_pred cccccccchhhHHH---HHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEE
Q 001277 183 ILKELVGIDSRLEK---LRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTF 241 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 241 (1109)
....+||.....+. +.+++..+.-..|.|.+.|++|.|||+||.++++.+..+.+.+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 45689998776654 344444443346899999999999999999999999887664433
No 423
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.08 E-value=0.13 Score=58.47 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=60.9
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccc--eEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDG--STFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIG 285 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1109)
...|.|+|+.|.||||+++++.+.+....+. .++.. ....+ .. ....... .. ....... ..+.......++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~--EdpiE-~~-~~~~~~~-~~-~v~Q~~v-~~~~~~~~~~l~ 206 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY--EAPIE-FV-YDEIETI-SA-SVCQSEI-PRHLNNFAAGVR 206 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe--CCCce-Ee-ccccccc-cc-eeeeeec-cccccCHHHHHH
Confidence 4789999999999999999999877554332 22221 11111 00 0000000 00 0000000 012234567778
Q ss_pred HHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeC
Q 001277 286 SRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTR 327 (1109)
Q Consensus 286 ~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR 327 (1109)
..|+..+-.+++..+.+.+..+..+... ..|-. ++||=
T Consensus 207 ~aLR~~Pd~i~vGEiRd~et~~~al~aa---~tGh~-v~tTl 244 (358)
T TIGR02524 207 NALRRKPHAILVGEARDAETISAALEAA---LTGHP-VYTTL 244 (358)
T ss_pred HHhccCCCEEeeeeeCCHHHHHHHHHHH---HcCCc-EEEee
Confidence 8899999999999999988776444331 24433 55553
No 424
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=0.53 Score=51.97 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=39.2
Q ss_pred ccccccchhhHHHHHhhhccc------------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccc
Q 001277 184 LKELVGIDSRLEKLRFLIATE------------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDG 238 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 238 (1109)
..++-|.+..++.+.+..... -...+-|.++|++|.|||.||++++.+-...|-.
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 345666777777666554311 1234678899999999999999999988777643
No 425
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.06 E-value=1.5 Score=49.03 Aligned_cols=48 Identities=19% Similarity=0.112 Sum_probs=33.7
Q ss_pred eEEcCCCCHHHHHHHHHHhhhcCCCCC-chHHHHHHHHHHHhCCCchhH
Q 001277 342 IYNLEVLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 342 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal 389 (1109)
+++|++++.+|+..++....-..--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774433222 233445566666679999654
No 426
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.05 E-value=0.15 Score=55.61 Aligned_cols=55 Identities=27% Similarity=0.216 Sum_probs=42.5
Q ss_pred cccccccchhhHHH---HHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc
Q 001277 183 ILKELVGIDSRLEK---LRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD 237 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1109)
..+.+||..+..+. +.++...+.-..+.|.|+|++|.|||+||..+++.+...-+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 45678998765543 45555555456789999999999999999999999987644
No 427
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.04 E-value=0.086 Score=61.69 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=51.7
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccc-cceEEeeechhhhcccCChHHHHHHHHHHHh-hccCccc---ccccccH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADISI---WNVDDGI 281 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~---~~~~~~~ 281 (1109)
....++|+|.+|.|||||++.+++.+.... +..+++.-|.+..+. +..+.+.+-.++. ...+..+ .......
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeE---Vtdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEE---VTDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhh---HHHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 345788999999999999999999775533 344445444443222 2223222211111 0001000 0011122
Q ss_pred HHHHHHH--cCCCCceEeccCCCHHH
Q 001277 282 NIIGSRL--RQKKVLLVIDDVADVEQ 305 (1109)
Q Consensus 282 ~~l~~~L--~~k~~LlVLDdv~~~~~ 305 (1109)
..+.+++ .++.+||++|++-....
T Consensus 492 i~~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCchHHHH
Confidence 2233444 47899999999866554
No 428
>PRK13948 shikimate kinase; Provisional
Probab=93.03 E-value=0.076 Score=54.11 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..+.|.++|+.|.||||+++.++.++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999987753
No 429
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.03 E-value=0.077 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHhc
Q 001277 211 MGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
|.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 430
>PRK13949 shikimate kinase; Provisional
Probab=93.02 E-value=0.074 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998775
No 431
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.01 E-value=0.73 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=20.0
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 001277 211 MGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 432
>PRK14531 adenylate kinase; Provisional
Probab=93.00 E-value=0.48 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=20.9
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.|.|.|++|.||||+|+.++.++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 433
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.98 E-value=0.077 Score=53.99 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=23.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999998776
No 434
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.96 E-value=0.28 Score=54.34 Aligned_cols=99 Identities=22% Similarity=0.210 Sum_probs=53.5
Q ss_pred HHHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhc----
Q 001277 195 EKLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKL---- 269 (1109)
Q Consensus 195 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~---- 269 (1109)
..|...|. .+-+..+++-|+|..|+||||||..+.......-..++|+.. + +. +-...++.++-.
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~-----e-~~----ld~~~a~~lGvdl~rl 108 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA-----E-HA----LDPEYAESLGVDLDRL 108 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES-----S-S-------HHHHHHTT--GGGE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC-----c-cc----chhhHHHhcCccccce
Confidence 34445554 222456799999999999999999888776655455666651 1 11 112233333310
Q ss_pred cCcccccccccHHHHHHHHcC-CCCceEeccCCCH
Q 001277 270 ADISIWNVDDGINIIGSRLRQ-KKVLLVIDDVADV 303 (1109)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~ 303 (1109)
.-..+...++....+...++. ..-++|+|-|...
T Consensus 109 lv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 109 LVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred EEecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 001112334455555555553 4468999988554
No 435
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.95 E-value=0.068 Score=56.56 Aligned_cols=25 Identities=44% Similarity=0.608 Sum_probs=22.4
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
+|+|.|.+|.||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 436
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.95 E-value=0.23 Score=50.45 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=26.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
...+++|+|..|.|||||.+.++.... ...+.+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 61 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRL 61 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEE
Confidence 346899999999999999999987543 23444554
No 437
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.94 E-value=0.35 Score=54.44 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+..+|..+-....++-|+|.+|+|||++|..++...
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 34445554333456789999999999999998887654
No 438
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.94 E-value=0.16 Score=50.65 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=60.1
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
..+++|+|..|.|||||++.++..+. ...+.+++....- .. .. .. .....+.-.... ..-+...-.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~-~~-~~-~~----~~~~~i~~~~ql--S~G~~~r~~l~~~ 94 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDI-AK-LP-LE----ELRRRIGYVPQL--SGGQRQRVALARA 94 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEc-cc-CC-HH----HHHhceEEEeeC--CHHHHHHHHHHHH
Confidence 36899999999999999999987553 3455565542110 00 00 00 111111100000 1111223334555
Q ss_pred HcCCCCceEeccCC---CHHH---HHHHHhcCCCCCCCcEEEEEeCCchhhHh
Q 001277 288 LRQKKVLLVIDDVA---DVEQ---LQNLARKRDWFGPGSKIVITTRDKQLLVA 334 (1109)
Q Consensus 288 L~~k~~LlVLDdv~---~~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 334 (1109)
+...+-++++|+.. +... +..++.... ..+..||++|-+......
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 66678899999873 2222 222222221 235678888887665444
No 439
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.93 E-value=0.065 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 440
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.89 E-value=0.079 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.1
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
++++|+|++|+||||||+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988654
No 441
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.89 E-value=0.36 Score=49.59 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...++.|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987653
No 442
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.87 E-value=0.15 Score=55.53 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=28.4
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
....++.|.|.+|+|||++|.+++.....+=+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35678999999999999999988765444434556664
No 443
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.86 E-value=0.12 Score=58.88 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=37.8
Q ss_pred cccccchhhHHHHHhhhccc--------C----CCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 185 KELVGIDSRLEKLRFLIATE--------S----SDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
.+++|.+..++.+..++... . ...+-|.++|++|+|||+||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 45788888777776665320 0 1136789999999999999999998775443
No 444
>PRK14526 adenylate kinase; Provisional
Probab=92.84 E-value=0.36 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEecCCchhHHHHHHHHHHH
Q 001277 211 MGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+.|+|++|.||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988755
No 445
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.83 E-value=5.9 Score=43.87 Aligned_cols=155 Identities=10% Similarity=0.064 Sum_probs=84.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcc---------cc-ceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHE---------FD-GSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNV 277 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~ 277 (1109)
.++..++|..|+||+++|+.+.+.+-.. .+ ...++. ..+ ..-.+.++ +++...+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g---~~i~vd~I-r~l~~~~~~~~------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD---KDLSKSEF-LSAINKLYFSS------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC---CcCCHHHH-HHHHHHhccCC-------
Confidence 4677799999999999999999876111 11 111111 000 00101111 11211111000
Q ss_pred cccHHHHHHHHcCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEEEeCC-chhhHhhCCCccceEEcCCCCHHHHH
Q 001277 278 DDGINIIGSRLRQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVITTRD-KQLLVAHEVDEEHIYNLEVLSNDEAL 354 (1109)
Q Consensus 278 ~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~ 354 (1109)
.-.+++=++|+|+++... ..+.|+..+...++++.+|++|.+ ..+..... ....++++.++++++..
T Consensus 86 ---------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~-SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 86 ---------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV-SRCQVFNVKEPDQQKIL 155 (299)
T ss_pred ---------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH-hCeEEEECCCCCHHHHH
Confidence 001356678889987653 366677666655677888776654 33333221 11238999999999999
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 355 QLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 355 ~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
+.+.... . ..+.++.++...+|.=-|+..+
T Consensus 156 ~~l~~~~-----~---~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 156 AKLLSKN-----K---EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHHcC-----C---ChhHHHHHHHHcCCHHHHHHHH
Confidence 8876541 1 1134556666666632454443
No 446
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.82 E-value=0.68 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..++-.|+|-.|+||+||..+++.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 357889999999999999988875
No 447
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.82 E-value=0.33 Score=56.19 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=52.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHh-hccCcc--ccccc-----
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLL-KLADIS--IWNVD----- 278 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~--~~~~~----- 278 (1109)
....++|.|.+|+|||||+..++.....+....+.+..+.+...+ +.++.++++..-. ...-.. ..+..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rE---v~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 346799999999999999999988776554444444444443221 3344444332110 000000 01110
Q ss_pred ---ccHHHHHHHH---cCCCCceEeccCCCHH
Q 001277 279 ---DGINIIGSRL---RQKKVLLVIDDVADVE 304 (1109)
Q Consensus 279 ---~~~~~l~~~L---~~k~~LlVLDdv~~~~ 304 (1109)
.....+.+++ +++++||++||+-...
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 1122334555 3689999999995543
No 448
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.52 Score=56.03 Aligned_cols=174 Identities=18% Similarity=0.182 Sum_probs=90.5
Q ss_pred cccccchhhHHHHHhhhcccC--------CC---eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccC
Q 001277 185 KELVGIDSRLEKLRFLIATES--------SD---VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEG 253 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~--------~~---~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1109)
.++=|+.+..+.+++.+.-.. .. ..-|.++|++|.|||-||.+++....-+ |+. +..
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-vKG------ 734 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-VKG------ 734 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-ecC------
Confidence 345566666666666554221 11 2348899999999999999988754433 332 221
Q ss_pred ChHHHHHHHHHHHhhccCcccccccccHHHHHHHH-cCCCCceEeccCCCHH-------------HHHHHHhcCCCC--C
Q 001277 254 SVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-RQKKVLLVIDDVADVE-------------QLQNLARKRDWF--G 317 (1109)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~--~ 317 (1109)
. +++.... ...++.+..+-.+. .-|++.+.+|.+++.. ....++..++.. -
T Consensus 735 -P-----ElL~KyI-------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 735 -P-----ELLSKYI-------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred -H-----HHHHHHh-------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 1 1222222 11222333333333 4689999999987642 255555554421 2
Q ss_pred CCcEEEE-EeCCchhhHh----hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 318 PGSKIVI-TTRDKQLLVA----HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 318 ~gs~Iii-TTR~~~v~~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
.|.-|+- |||..-+-.+ -+.+. .+.-+.-++.|.+++|....-.-. .++ ....+.++.+.+|.-=|
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~--~v~C~~P~~~eRl~il~~ls~s~~--~~~-~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDK--LVYCPLPDEPERLEILQVLSNSLL--KDT-DVDLECLAQKTDGFTGA 872 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccce--eeeCCCCCcHHHHHHHHHHhhccC--Ccc-ccchHHHhhhcCCCchh
Confidence 4555553 5664432222 12332 444455567777777765542111 111 12235566666665433
No 449
>PRK01184 hypothetical protein; Provisional
Probab=92.81 E-value=0.29 Score=50.23 Aligned_cols=18 Identities=33% Similarity=0.796 Sum_probs=16.5
Q ss_pred eEEEEEecCCchhHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLAR 226 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~ 226 (1109)
.+|+|+|++|.||||+|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 479999999999999987
No 450
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.80 E-value=0.11 Score=50.62 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=25.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEe
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFL 242 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 242 (1109)
++|.|+|..|.|||||++.+.+.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 479999999999999999999987743 4444344
No 451
>PRK06217 hypothetical protein; Validated
Probab=92.79 E-value=0.074 Score=54.63 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.|.|.|.+|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 452
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.79 E-value=0.17 Score=55.21 Aligned_cols=45 Identities=18% Similarity=0.068 Sum_probs=36.0
Q ss_pred hhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 199 FLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 199 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
+++..+-+..+++.|+|.+|.|||++|.++..+.......++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344434456789999999999999999999888877777777775
No 453
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.78 E-value=0.075 Score=52.20 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.4
Q ss_pred EEEEEecCCchhHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAY 229 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~ 229 (1109)
.|+|+|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999877
No 454
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.78 E-value=0.074 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+|+|.|.+|.||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 455
>PRK05439 pantothenate kinase; Provisional
Probab=92.77 E-value=0.13 Score=56.84 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=25.4
Q ss_pred CCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 205 SSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
....-+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999999998886654
No 456
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.77 E-value=0.11 Score=52.34 Aligned_cols=45 Identities=29% Similarity=0.286 Sum_probs=32.7
Q ss_pred cccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHH
Q 001277 187 LVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 187 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
+||.+..+.++.+.+..-.....-|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888887776643333356779999999999999999883
No 457
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.76 E-value=0.12 Score=51.86 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+++|+|..|.|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987765
No 458
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.76 E-value=0.13 Score=53.78 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...++|.|.+|+|||+|+..+.+....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CCEEEEEcCcccccchhhHHHHhcccc
Confidence 357899999999999999999987753
No 459
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.75 E-value=0.085 Score=52.34 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHh
Q 001277 211 MGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
|.|+|++|.||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 460
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=92.73 E-value=0.11 Score=56.85 Aligned_cols=44 Identities=30% Similarity=0.499 Sum_probs=36.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSE 250 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 250 (1109)
+..-|++.|-+|+|||-|.+++.+.++.+..+...+..+.+...
T Consensus 146 kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtR 189 (468)
T COG0055 146 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR 189 (468)
T ss_pred cCceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEecccccc
Confidence 34679999999999999999999999888887777766766543
No 461
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.72 E-value=0.18 Score=56.73 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=27.0
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHH
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..|..+|..+-...+++-|+|.+|+|||+|+..++-
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 345555654444567888999999999999988764
No 462
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.70 E-value=1.3 Score=55.23 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=35.5
Q ss_pred ccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 184 LKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.+.++|.+..+.++......-.....-|.|+|..|+||+++|+++.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 3457788877777666554322233458899999999999999998754
No 463
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.69 E-value=0.32 Score=54.51 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.0
Q ss_pred EEEEecCCchhHHHHHHHHHHHh
Q 001277 211 MGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+++.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998775
No 464
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.67 E-value=0.16 Score=56.18 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=37.6
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD 237 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1109)
|...+.++=..+....+...+..+ +.|.|.|.+|+||||+|+.++.++...|-
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 444445555555556666666432 46999999999999999999998875543
No 465
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.66 E-value=0.18 Score=56.20 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=27.4
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHH
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..|..+|..+-...+++-|+|.+|+|||+||..++-
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 445556654445567899999999999999987764
No 466
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.63 E-value=0.27 Score=55.94 Aligned_cols=102 Identities=24% Similarity=0.398 Sum_probs=57.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
.++=+-|||..|.|||.|.-.+|+.+...-..++-+ -....++-+++... ....+.+..+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF-------------h~Fm~~vh~~l~~~-----~~~~~~l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF-------------HEFMLDVHSRLHQL-----RGQDDPLPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc-------------cHHHHHHHHHHHHH-----hCCCccHHHHHH
Confidence 456788999999999999999999664321111111 11112222222211 112234566667
Q ss_pred HHcCCCCceEeccC--CCHHH---HHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 287 RLRQKKVLLVIDDV--ADVEQ---LQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv--~~~~~---~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
.+.++-.||.+|.+ .+..+ +..|...+ +..|. |||+|.|.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNR 167 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCC
Confidence 77888889999986 34333 44444443 24555 55555443
No 467
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.63 E-value=0.098 Score=54.23 Aligned_cols=26 Identities=35% Similarity=0.282 Sum_probs=22.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.++.|.|.+|+||||++..++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47889999999999999988876653
No 468
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=1.1 Score=53.83 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=35.7
Q ss_pred ccchhhHHHHHhhhcccC-------CCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 188 VGIDSRLEKLRFLIATES-------SDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 188 vGr~~~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
-+++..+..+.+.+...- .-..++.++|.+|.||||++++++..+.-+
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 456666666666665321 134678899999999999999999988765
No 469
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.61 E-value=0.13 Score=55.04 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=31.3
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.+|...+.....+..+|+|+|.||+||+||..++-.++.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 34444455555677899999999999999999888776544
No 470
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.59 E-value=0.08 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.3
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
++.|.|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998863
No 471
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.58 E-value=0.17 Score=54.98 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=33.1
Q ss_pred HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEE
Q 001277 196 KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTF 241 (1109)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 241 (1109)
+.++++. ..++.+|.|.|.+|.|||||+..+.+.+.......+.
T Consensus 94 ~~r~~~~--~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 94 RNRARFA--ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred HHHHHHH--hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 3444443 3468899999999999999999999988776543333
No 472
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.57 E-value=0.085 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+|.|.|.+|.||||+|+.+..+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 473
>PRK13946 shikimate kinase; Provisional
Probab=92.53 E-value=0.089 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.3
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+.|.++|++|.||||+|+.++.++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999874
No 474
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.52 E-value=0.32 Score=52.41 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+.++|.|-.|+|||+|+..+.+..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~ 93 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQA 93 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhh
Confidence 34678999999999999999888754
No 475
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.51 E-value=0.076 Score=51.54 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.|+|+|+.|+|||||++.++......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865444
No 476
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.47 E-value=0.66 Score=58.39 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHhCCCceEeeCC
Q 001277 26 RKSFTDHLYAALKNKGIYVFKDDK 49 (1109)
Q Consensus 26 ~~~~~~~l~~~L~~~g~~~~~d~~ 49 (1109)
|+.|+++...+|++.|+..-+|.+
T Consensus 177 R~~wa~~~N~~l~~~g~~~rid~r 200 (744)
T TIGR02768 177 REQWAELANEHLAEAGLDLRIDHR 200 (744)
T ss_pred HHHHHHHHHHHHHHcCCCceEccc
Confidence 788999999999999999999988
No 477
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.46 E-value=0.38 Score=48.86 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=26.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
...+++|+|..|.|||||++.++.... ...+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 59 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKV 59 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEE
Confidence 346899999999999999999887443 23444444
No 478
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.41 E-value=0.32 Score=60.16 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.7
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...|+|+|..|.||||||+.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998875
No 479
>PRK15453 phosphoribulokinase; Provisional
Probab=92.35 E-value=0.17 Score=54.45 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+|+|.|.+|.||||+|+++.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999876654
No 480
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.33 E-value=0.37 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
...+++|+|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998865
No 481
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.88 Score=53.96 Aligned_cols=175 Identities=18% Similarity=0.169 Sum_probs=90.3
Q ss_pred cccccchhhHHHHHhhhc-----------ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccC
Q 001277 185 KELVGIDSRLEKLRFLIA-----------TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEG 253 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1109)
..+-|-...+..+..... .+....+-+..+|++|.|||-+|++|+++... .+|..+..+.-
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a----~~~~i~~peli---- 255 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA----FLFLINGPELI---- 255 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc----eeEecccHHHH----
Confidence 345555666665554443 11234678899999999999999999997752 34444332211
Q ss_pred ChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCC-CCceEeccCCCHH------------HHHHHHhcCCCCCCCc
Q 001277 254 SVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQK-KVLLVIDDVADVE------------QLQNLARKRDWFGPGS 320 (1109)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k-~~LlVLDdv~~~~------------~~~~l~~~~~~~~~gs 320 (1109)
+.... .....+...+.+....+ +..|.+|+++..- ....+....++.++.+
T Consensus 256 ----------~k~~g------Ete~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~ 319 (693)
T KOG0730|consen 256 ----------SKFPG------ETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDA 319 (693)
T ss_pred ----------Hhccc------chHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcC
Confidence 11111 11122333444455566 8888888875431 1222333333334333
Q ss_pred EE--EEEeCCchhh-HhhC-CCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 321 KI--VITTRDKQLL-VAHE-VDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 321 ~I--iiTTR~~~v~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
++ |-|||.+.-+ ...+ ..-...+.+.-.+..+-.++++...-.-... .......++..+.|.-
T Consensus 320 ~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 320 KVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred cEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc---chhhHHHHHHHccchh
Confidence 33 3455544321 1111 1122367777777777777777665332222 1123344555555543
No 482
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.30 E-value=0.11 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..|.|+|+.|.||||+|+.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.29 E-value=0.27 Score=55.10 Aligned_cols=110 Identities=17% Similarity=0.127 Sum_probs=59.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
...++|.|..|.|||||++++...+.... ..+.+.+..+..-....... +...........-...+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHHH
Confidence 46899999999999999999987664432 23333322221111000000 0000000001112345566777
Q ss_pred HcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcE-EEEEeCCch
Q 001277 288 LRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSK-IVITTRDKQ 330 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~-IiiTTR~~~ 330 (1109)
|+..+=.||+|.+...+.++.+... ..|.. ++.|+-...
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~----~~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV----NTGHPGSITTLHAGS 254 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH----hcCCCeEEEEEeCCC
Confidence 8888889999999987766544333 23333 355555433
No 484
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.28 E-value=0.11 Score=53.62 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 485
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.26 E-value=0.38 Score=60.43 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
+.++++|+|+.|.||||+.+.+.-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3478999999999999999988754
No 486
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.25 E-value=0.11 Score=51.63 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
+-|.++||.|.||||+.++++..+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998776554
No 487
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.23 E-value=0.13 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+++|+|+.|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987654
No 488
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.20 E-value=0.11 Score=50.24 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
+|.|-|++|.||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 5889999999999999999987653
No 489
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.19 E-value=0.11 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999874
No 490
>PRK13975 thymidylate kinase; Provisional
Probab=92.17 E-value=0.12 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.+|+|.|+.|+||||+|+.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998864
No 491
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.16 E-value=0.28 Score=54.92 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=26.3
Q ss_pred CCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 205 SSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.....+|+|.|.+|+|||||+..+...+...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999988877653
No 492
>PRK14530 adenylate kinase; Provisional
Probab=92.16 E-value=0.11 Score=54.86 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+.|.|+|++|.||||+|+.++.++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
No 493
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.11 E-value=0.16 Score=53.10 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=26.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFD 237 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1109)
....|.++||+|.||||..+.++..+..++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 4567889999999999999999988877664
No 494
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.09 E-value=0.13 Score=52.74 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=29.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
.|++.|+|+.|+|||||++.+.....+.|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 47899999999999999999999888888544433
No 495
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.07 E-value=0.15 Score=57.75 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=39.8
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccce
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGS 239 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 239 (1109)
..++|.+..+..+...+..+ +-+.+.|.+|+|||+||+.++..+...|-..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 34889888888776666544 4588999999999999999999887555433
No 496
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.05 E-value=0.084 Score=30.65 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=5.9
Q ss_pred CCCEEeCCCCCCcccc
Q 001277 811 SLKQLNLSQNNFVTLP 826 (1109)
Q Consensus 811 ~L~~L~Ls~n~l~~lp 826 (1109)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555444443
No 497
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.02 E-value=0.15 Score=62.24 Aligned_cols=57 Identities=19% Similarity=0.405 Sum_probs=42.9
Q ss_pred cccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEee
Q 001277 183 ILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLA 243 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 243 (1109)
-..+++|.+..++.+...+... +.+.++|++|+||||+|+++++.+... |...+++.
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 4567899998888887777533 356699999999999999999987654 34444444
No 498
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.00 E-value=0.13 Score=53.81 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.1
Q ss_pred ccCCCeeEEEEEecCCchhHHHHHHHHHH
Q 001277 203 TESSDVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 203 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
.+....+.|.|+|++|+|||||++.+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456789999999999999999998753
No 499
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.00 E-value=0.17 Score=58.52 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHhhhc-------cc-------CCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 186 ELVGIDSRLEKLRFLIA-------TE-------SSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~-------~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.+||.+..++.+...+. .. ....+.+.++|++|+|||++|+.++..+...
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 46788777776644331 00 0012568899999999999999999876443
No 500
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.96 E-value=0.075 Score=33.24 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=8.6
Q ss_pred CcEEeccCccCcccCCcc
Q 001277 647 LMELFLDGTSIAEVPSSI 664 (1109)
Q Consensus 647 L~~L~L~~~~i~~lp~~i 664 (1109)
|++|+|++|.++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444445555555443
Done!