Query 001277
Match_columns 1109
No_of_seqs 874 out of 6214
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 19:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1.1E-45 3.7E-50 363.8 11.8 168 10-180 5-174 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 6.1E-45 2.1E-49 363.1 12.7 167 9-177 31-200 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-39 4.9E-44 393.5 24.2 302 188-503 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 4.3E-34 1.5E-38 383.4 20.8 311 178-502 117-452 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 6.2E-33 2.1E-37 340.9 21.0 304 179-498 118-448 (591)
6 1vt4_I APAF-1 related killer D 100.0 3.5E-33 1.2E-37 338.6 17.2 281 185-495 128-436 (1221)
7 4eco_A Uncharacterized protein 100.0 5.2E-28 1.8E-32 298.7 25.8 331 527-865 207-598 (636)
8 4ecn_A Leucine-rich repeat pro 100.0 6.4E-28 2.2E-32 302.5 26.3 300 567-872 441-823 (876)
9 4ecn_A Leucine-rich repeat pro 100.0 5.1E-27 1.7E-31 294.3 28.7 317 542-866 481-839 (876)
10 3rgz_A Protein brassinosteroid 100.0 6.5E-28 2.2E-32 304.9 20.0 341 529-871 321-721 (768)
11 4eco_A Uncharacterized protein 99.9 6.2E-27 2.1E-31 289.0 24.5 324 541-873 197-584 (636)
12 3rgz_A Protein brassinosteroid 99.9 4.2E-27 1.5E-31 297.4 20.4 341 528-871 202-555 (768)
13 3h16_A TIR protein; bacteria T 99.9 7.9E-29 2.7E-33 244.8 2.9 119 10-129 17-136 (154)
14 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-25 3.7E-30 277.9 28.7 89 545-634 76-166 (606)
15 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-25 3.7E-30 277.8 27.8 338 527-872 81-538 (606)
16 2z7x_B TOLL-like receptor 1, v 99.9 2.4E-25 8.3E-30 269.3 27.2 164 736-910 321-497 (520)
17 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-25 7.1E-30 271.9 26.2 296 528-828 28-428 (549)
18 3v47_A TOLL-like receptor 5B a 99.9 1.2E-25 4.1E-30 267.2 23.0 323 538-865 21-406 (455)
19 4fmz_A Internalin; leucine ric 99.9 7.9E-25 2.7E-29 250.2 26.8 296 529-865 47-344 (347)
20 2id5_A Lingo-1, leucine rich r 99.9 5E-25 1.7E-29 263.4 25.9 276 545-844 52-331 (477)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-24 9.6E-29 262.3 29.5 106 549-658 52-159 (562)
22 3t6q_A CD180 antigen; protein- 99.9 2.4E-24 8.2E-29 265.8 28.8 294 550-865 255-558 (606)
23 4fmz_A Internalin; leucine ric 99.9 3E-24 1E-28 245.4 27.3 287 543-871 38-327 (347)
24 2z63_A TOLL-like receptor 4, v 99.9 8.7E-25 3E-29 267.7 24.5 334 528-871 54-510 (570)
25 3o6n_A APL1; leucine-rich repe 99.9 1.8E-24 6.1E-29 251.4 25.4 301 548-864 44-349 (390)
26 3t6q_A CD180 antigen; protein- 99.9 4.4E-24 1.5E-28 263.4 29.9 333 529-865 36-436 (606)
27 1o6v_A Internalin A; bacterial 99.9 5.3E-24 1.8E-28 253.4 29.5 314 529-865 49-364 (466)
28 2id5_A Lingo-1, leucine rich r 99.9 2.1E-24 7E-29 258.1 25.8 301 538-865 22-331 (477)
29 3oja_B Anopheles plasmodium-re 99.9 2.5E-24 8.5E-29 264.2 25.2 286 548-865 50-356 (597)
30 2z63_A TOLL-like receptor 4, v 99.9 3.6E-24 1.2E-28 262.2 25.6 333 528-865 30-481 (570)
31 2z7x_B TOLL-like receptor 1, v 99.9 3E-24 1E-28 259.7 23.9 325 528-865 23-479 (520)
32 3v47_A TOLL-like receptor 5B a 99.9 3E-24 1E-28 255.1 23.1 345 552-909 13-423 (455)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-23 4.6E-28 256.2 29.3 326 527-865 53-508 (562)
34 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-25 9.1E-30 249.6 12.8 250 575-850 51-308 (313)
35 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-24 7.7E-29 262.7 22.0 366 527-910 51-526 (549)
36 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-23 5.1E-28 267.8 27.9 313 545-863 44-410 (844)
37 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-23 7.4E-28 246.2 27.1 278 545-871 38-324 (457)
38 1o6v_A Internalin A; bacterial 99.9 2.3E-23 7.8E-28 247.9 27.0 302 547-870 44-346 (466)
39 3j0a_A TOLL-like receptor 5; m 99.9 2.7E-23 9.3E-28 265.4 28.2 322 538-865 15-392 (844)
40 3o6n_A APL1; leucine-rich repe 99.9 2.6E-23 8.8E-28 241.6 23.5 298 530-845 49-351 (390)
41 4fcg_A Uncharacterized protein 99.9 1.6E-23 5.6E-28 236.5 20.9 221 597-843 81-311 (328)
42 1ziw_A TOLL-like receptor 3; i 99.9 5.3E-23 1.8E-27 257.3 27.0 152 529-682 28-185 (680)
43 2ft3_A Biglycan; proteoglycan, 99.9 1E-22 3.4E-27 231.0 25.3 260 575-865 34-305 (332)
44 3oja_B Anopheles plasmodium-re 99.9 3.9E-23 1.3E-27 253.6 23.5 272 539-845 63-357 (597)
45 1ogq_A PGIP-2, polygalacturona 99.9 5.7E-24 2E-28 238.8 14.6 249 597-870 50-307 (313)
46 1xku_A Decorin; proteoglycan, 99.9 4.2E-22 1.4E-26 225.7 29.5 261 550-844 32-304 (330)
47 1xku_A Decorin; proteoglycan, 99.9 1.5E-22 5.1E-27 229.4 24.6 262 574-865 31-304 (330)
48 1ziw_A TOLL-like receptor 3; i 99.9 3E-22 1E-26 250.5 29.2 83 781-864 500-594 (680)
49 3bz5_A Internalin-J, INLJ; leu 99.9 5.5E-22 1.9E-26 234.2 29.6 289 528-844 44-350 (457)
50 4fcg_A Uncharacterized protein 99.9 6.7E-23 2.3E-27 231.5 19.5 229 548-826 80-317 (328)
51 2ft3_A Biglycan; proteoglycan, 99.9 5.2E-22 1.8E-26 225.1 26.7 263 549-846 33-307 (332)
52 1jl5_A Outer protein YOPM; leu 99.9 5.2E-21 1.8E-25 225.6 33.4 294 530-865 75-368 (454)
53 2z80_A TOLL-like receptor 2, v 99.9 7.6E-23 2.6E-27 234.1 16.4 277 548-847 30-315 (353)
54 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-21 6E-26 241.5 28.9 129 529-660 55-188 (635)
55 3ub2_A TOLL/interleukin-1 rece 99.9 3.1E-24 1.1E-28 208.0 2.1 134 8-146 5-145 (146)
56 1jl5_A Outer protein YOPM; leu 99.9 6.7E-22 2.3E-26 233.2 22.4 285 547-864 9-307 (454)
57 3zyj_A Leucine-rich repeat-con 99.9 1.4E-21 4.8E-26 230.7 25.1 243 576-844 45-290 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 1.5E-21 5.2E-26 231.2 24.2 242 577-844 57-301 (452)
59 4g8a_A TOLL-like receptor 4; l 99.9 9.5E-21 3.3E-25 234.9 27.8 106 528-635 78-187 (635)
60 2z66_A Variable lymphocyte rec 99.9 1.9E-21 6.3E-26 217.9 19.2 245 552-824 10-262 (306)
61 2z66_A Variable lymphocyte rec 99.9 3E-21 1E-25 216.2 19.5 243 576-844 9-259 (306)
62 1wwl_A Monocyte differentiatio 99.9 1.4E-22 4.7E-27 227.5 8.4 248 569-845 38-308 (312)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-20 8.8E-25 226.3 28.2 259 529-850 43-301 (622)
64 3g06_A SSPH2 (leucine-rich rep 99.9 8.5E-20 2.9E-24 221.7 31.9 252 550-865 41-295 (622)
65 3zyj_A Leucine-rich repeat-con 99.9 3.1E-20 1.1E-24 219.1 25.6 244 551-823 45-292 (440)
66 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-22 1.1E-26 225.2 7.3 244 570-848 30-277 (317)
67 1ozn_A Reticulon 4 receptor; N 99.9 9.4E-21 3.2E-25 209.8 18.7 221 577-845 14-237 (285)
68 3zyi_A Leucine-rich repeat-con 99.8 4E-20 1.4E-24 218.9 24.7 244 551-823 56-303 (452)
69 2z80_A TOLL-like receptor 2, v 99.8 1E-20 3.5E-25 216.4 16.3 264 538-826 42-317 (353)
70 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-19 3.6E-24 201.3 23.1 195 646-865 33-236 (285)
71 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-20 8.8E-25 209.5 13.7 259 576-869 12-277 (317)
72 3oja_A Leucine-rich immune mol 99.8 5.1E-20 1.8E-24 219.3 16.5 213 598-845 35-249 (487)
73 3oja_A Leucine-rich immune mol 99.8 3.3E-20 1.1E-24 221.0 12.7 236 573-843 33-272 (487)
74 2js7_A Myeloid differentiation 99.8 1.1E-20 3.7E-25 186.4 6.2 100 10-111 13-117 (160)
75 1wwl_A Monocyte differentiatio 99.8 1E-20 3.6E-25 212.2 6.0 244 547-824 41-310 (312)
76 2j67_A TOLL like receptor 10; 99.8 1.4E-20 4.7E-25 188.5 4.1 102 8-111 30-136 (178)
77 1fyx_A TOLL-like receptor 2; b 99.8 1.1E-20 3.9E-25 184.5 1.6 98 10-109 2-104 (149)
78 1t3g_A X-linked interleukin-1 99.8 7.1E-20 2.4E-24 180.3 6.0 100 12-111 1-114 (159)
79 1z7x_W Ribonuclease inhibitor; 99.8 4.1E-21 1.4E-25 228.5 -4.4 301 546-865 53-409 (461)
80 1z7x_W Ribonuclease inhibitor; 99.8 4.6E-21 1.6E-25 228.0 -4.2 300 547-865 26-381 (461)
81 1p9a_G Platelet glycoprotein I 99.8 7.6E-18 2.6E-22 186.3 21.8 199 594-844 7-206 (290)
82 2z62_A TOLL-like receptor 4, v 99.8 3.2E-18 1.1E-22 188.4 18.0 213 583-845 16-236 (276)
83 2z62_A TOLL-like receptor 4, v 99.8 5.7E-18 2E-22 186.4 19.4 212 562-823 19-237 (276)
84 1p9a_G Platelet glycoprotein I 99.8 1.7E-17 5.8E-22 183.6 22.4 203 570-823 6-208 (290)
85 2o6q_A Variable lymphocyte rec 99.8 3.3E-17 1.1E-21 179.5 22.6 129 622-750 38-168 (270)
86 2o6q_A Variable lymphocyte rec 99.7 6E-17 2.1E-21 177.4 23.1 173 575-749 17-191 (270)
87 3rfs_A Internalin B, repeat mo 99.7 1.2E-17 4.1E-22 183.2 17.1 181 643-853 61-242 (272)
88 2ca6_A RAN GTPase-activating p 99.7 1.7E-19 6E-24 208.9 2.5 253 576-846 11-316 (386)
89 3rfs_A Internalin B, repeat mo 99.7 1.4E-17 4.7E-22 182.8 16.6 208 593-834 37-247 (272)
90 2xwt_C Thyrotropin receptor; s 99.7 2.7E-17 9.2E-22 176.8 18.1 213 579-845 16-238 (239)
91 2ast_B S-phase kinase-associat 99.7 7.9E-19 2.7E-23 199.3 6.1 251 551-851 49-311 (336)
92 1h6u_A Internalin H; cell adhe 99.7 3E-17 1E-21 183.5 18.4 190 620-845 40-229 (308)
93 2xwt_C Thyrotropin receptor; s 99.7 1.7E-17 5.7E-22 178.4 15.7 196 646-867 32-239 (239)
94 4glp_A Monocyte differentiatio 99.7 1.2E-17 4E-22 187.1 14.2 221 598-846 65-307 (310)
95 2ast_B S-phase kinase-associat 99.7 7.8E-19 2.7E-23 199.3 4.0 177 549-727 70-258 (336)
96 1h6u_A Internalin H; cell adhe 99.7 4.3E-17 1.5E-21 182.1 16.4 197 594-827 38-234 (308)
97 4ay9_X Follicle-stimulating ho 99.7 6.7E-17 2.3E-21 184.2 17.8 170 577-749 12-187 (350)
98 3ogk_B Coronatine-insensitive 99.7 1.1E-18 3.7E-23 214.6 -3.0 316 547-865 162-524 (592)
99 2ca6_A RAN GTPase-activating p 99.7 1.3E-18 4.5E-23 201.5 -3.8 254 570-841 28-338 (386)
100 4glp_A Monocyte differentiatio 99.7 2.4E-16 8.1E-21 176.5 14.6 201 547-752 89-307 (310)
101 3m19_A Variable lymphocyte rec 99.7 1.4E-15 4.7E-20 164.7 20.0 173 647-844 16-190 (251)
102 3ogk_B Coronatine-insensitive 99.7 5.5E-18 1.9E-22 208.2 1.0 296 547-844 190-524 (592)
103 3goz_A Leucine-rich repeat-con 99.7 6.3E-18 2.2E-22 193.8 -0.4 252 554-844 3-295 (362)
104 3goz_A Leucine-rich repeat-con 99.6 9.6E-18 3.3E-22 192.3 -0.4 180 668-865 80-295 (362)
105 3m19_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 161.8 19.3 177 575-753 15-193 (251)
106 3cvr_A Invasion plasmid antige 99.6 1.2E-15 4.2E-20 182.9 17.5 192 598-832 60-253 (571)
107 4ay9_X Follicle-stimulating ho 99.6 3.8E-15 1.3E-19 169.7 19.4 232 601-862 13-254 (350)
108 2qen_A Walker-type ATPase; unk 99.6 7E-15 2.4E-19 167.6 20.3 296 178-496 5-349 (350)
109 2p1m_B Transport inhibitor res 99.6 4.1E-18 1.4E-22 209.5 -7.8 320 528-866 132-518 (594)
110 1h6t_A Internalin B; cell adhe 99.6 4.8E-15 1.6E-19 164.0 15.0 149 664-845 64-212 (291)
111 2p1m_B Transport inhibitor res 99.6 1.5E-17 5.1E-22 204.4 -5.9 42 708-749 281-324 (594)
112 1m9s_A Internalin B; cell inva 99.6 3.3E-15 1.1E-19 181.2 13.3 193 597-826 21-213 (605)
113 2fna_A Conserved hypothetical 99.6 1.1E-14 3.7E-19 166.5 16.7 296 178-495 6-356 (357)
114 3cvr_A Invasion plasmid antige 99.6 2.4E-14 8.3E-19 171.6 20.1 178 550-753 60-244 (571)
115 1dce_A Protein (RAB geranylger 99.6 3.2E-17 1.1E-21 197.9 -5.8 216 571-840 346-567 (567)
116 1m9s_A Internalin B; cell inva 99.6 7.8E-15 2.7E-19 178.0 13.0 171 594-798 40-210 (605)
117 1w5s_A Origin recognition comp 99.5 6.6E-14 2.3E-18 163.5 19.2 286 183-480 20-371 (412)
118 4ezg_A Putative uncharacterize 99.5 1.3E-14 4.6E-19 150.5 11.5 150 573-750 43-192 (197)
119 1h6t_A Internalin B; cell adhe 99.5 4.1E-14 1.4E-18 156.4 15.7 167 573-750 45-211 (291)
120 2o6s_A Variable lymphocyte rec 99.5 5.8E-14 2E-18 147.1 15.1 128 622-749 29-158 (208)
121 1xeu_A Internalin C; cellular 99.5 1.4E-14 4.6E-19 157.7 9.8 166 645-845 19-184 (263)
122 2o6s_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 143.9 17.3 173 649-852 11-184 (208)
123 4ezg_A Putative uncharacterize 99.5 2.8E-14 9.5E-19 148.1 11.5 150 618-772 41-191 (197)
124 2v9t_B SLIT homolog 2 protein 99.5 2E-13 6.9E-18 144.1 16.7 151 648-823 14-165 (220)
125 3e6j_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 143.7 16.8 148 648-844 22-170 (229)
126 2xot_A Amphoterin-induced prot 99.5 2.2E-13 7.5E-18 155.7 16.1 170 649-844 22-200 (361)
127 1dce_A Protein (RAB geranylger 99.5 5.4E-16 1.9E-20 187.1 -5.9 105 717-848 442-548 (567)
128 2v9t_B SLIT homolog 2 protein 99.5 4E-13 1.4E-17 141.9 15.6 150 577-728 14-164 (220)
129 1xeu_A Internalin C; cellular 99.5 1.5E-13 5.2E-18 149.4 12.4 168 572-751 17-184 (263)
130 2v70_A SLIT-2, SLIT homolog 2 99.5 4.9E-13 1.7E-17 141.1 15.7 150 649-823 15-166 (220)
131 2v70_A SLIT-2, SLIT homolog 2 99.4 8.7E-13 3E-17 139.3 15.7 151 577-729 14-166 (220)
132 3e6j_A Variable lymphocyte rec 99.4 9.8E-13 3.4E-17 139.8 16.0 123 577-702 22-145 (229)
133 2qby_B CDC6 homolog 3, cell di 99.4 9.8E-12 3.4E-16 143.5 25.2 281 184-480 19-339 (384)
134 2xot_A Amphoterin-induced prot 99.4 6.7E-13 2.3E-17 151.7 14.6 172 577-751 21-201 (361)
135 4b8c_D Glucose-repressible alc 99.4 8.9E-14 3E-18 173.1 4.9 120 590-712 217-336 (727)
136 2qby_A CDC6 homolog 1, cell di 99.4 1.1E-11 3.7E-16 143.1 18.5 287 183-480 18-348 (386)
137 2v1u_A Cell division control p 99.3 3.3E-11 1.1E-15 139.2 22.1 287 183-480 17-351 (387)
138 2ell_A Acidic leucine-rich nuc 99.3 2.2E-12 7.6E-17 129.9 10.6 84 645-730 24-109 (168)
139 4b8c_D Glucose-repressible alc 99.3 7.4E-13 2.5E-17 164.8 7.4 153 683-864 215-369 (727)
140 2ell_A Acidic leucine-rich nuc 99.3 3.1E-12 1.1E-16 128.8 9.4 130 596-751 23-159 (168)
141 2je0_A Acidic leucine-rich nuc 99.3 2.4E-12 8.3E-17 126.7 8.0 128 692-842 17-149 (149)
142 2je0_A Acidic leucine-rich nuc 99.3 3E-12 1E-16 126.1 7.3 127 620-747 16-148 (149)
143 1fnn_A CDC6P, cell division co 99.3 9.7E-11 3.3E-15 135.3 18.9 306 184-500 16-385 (389)
144 1njg_A DNA polymerase III subu 99.2 1.1E-10 3.7E-15 125.2 16.5 201 181-395 19-230 (250)
145 1w8a_A SLIT protein; signaling 99.2 1.1E-10 3.6E-15 120.3 13.6 124 577-703 11-137 (192)
146 1w8a_A SLIT protein; signaling 99.2 1.2E-10 4.2E-15 119.9 13.3 106 646-751 30-138 (192)
147 2wfh_A SLIT homolog 2 protein 99.2 2.2E-10 7.5E-15 118.0 14.2 107 645-751 31-138 (193)
148 1a9n_A U2A', U2A'; complex (nu 99.2 6.8E-11 2.3E-15 119.9 9.8 129 545-678 15-150 (176)
149 2o6r_A Variable lymphocyte rec 99.1 4.6E-10 1.6E-14 113.9 15.4 42 781-824 96-138 (177)
150 3sb4_A Hypothetical leucine ri 99.1 3.6E-11 1.2E-15 135.4 7.6 100 715-839 225-327 (329)
151 2chg_A Replication factor C sm 99.1 2.5E-10 8.5E-15 120.4 13.7 187 181-392 13-203 (226)
152 1a9n_A U2A', U2A'; complex (nu 99.1 5.9E-11 2E-15 120.4 8.4 102 646-750 43-151 (176)
153 2wfh_A SLIT homolog 2 protein 99.1 2.9E-10 9.8E-15 117.1 13.4 124 577-703 13-137 (193)
154 2o6r_A Variable lymphocyte rec 99.1 8.7E-10 3E-14 111.8 13.3 130 576-731 9-139 (177)
155 1ds9_A Outer arm dynein; leuci 99.0 3.7E-12 1.3E-16 132.1 -7.4 128 613-745 40-180 (198)
156 1sxj_B Activator 1 37 kDa subu 99.0 1.6E-09 5.4E-14 121.6 12.9 187 181-392 17-209 (323)
157 1ds9_A Outer arm dynein; leuci 99.0 1E-11 3.6E-16 128.7 -4.7 139 585-730 36-186 (198)
158 3sb4_A Hypothetical leucine ri 98.9 5.2E-09 1.8E-13 117.7 13.3 98 644-745 225-327 (329)
159 4fdw_A Leucine rich hypothetic 98.9 1.1E-07 3.8E-12 109.3 22.1 215 598-844 136-356 (401)
160 4fdw_A Leucine rich hypothetic 98.9 7.8E-08 2.7E-12 110.6 20.8 163 575-747 136-308 (401)
161 3g39_A Variable lymphocyte rec 98.8 1.2E-08 4.3E-13 102.4 11.9 102 648-751 12-114 (170)
162 2r9u_A Variable lymphocyte rec 98.8 1.3E-08 4.4E-13 102.7 12.0 101 648-751 15-117 (174)
163 1iqp_A RFCS; clamp loader, ext 98.8 1.1E-08 3.8E-13 114.8 12.2 187 181-392 21-211 (327)
164 2r9u_A Variable lymphocyte rec 98.8 1.8E-08 6.2E-13 101.6 10.9 81 622-703 34-116 (174)
165 3g39_A Variable lymphocyte rec 98.8 1.8E-08 6.2E-13 101.2 10.7 100 576-677 11-111 (170)
166 1hqc_A RUVB; extended AAA-ATPa 98.8 1.3E-07 4.4E-12 105.9 18.9 256 181-484 8-302 (324)
167 4fs7_A Uncharacterized protein 98.7 6.5E-07 2.2E-11 103.2 22.2 316 545-887 67-388 (394)
168 2chq_A Replication factor C sm 98.6 2E-07 6.8E-12 104.1 14.8 186 181-392 13-203 (319)
169 1jr3_A DNA polymerase III subu 98.6 3E-07 1E-11 105.2 14.5 197 182-393 13-221 (373)
170 2ifg_A High affinity nerve gro 98.6 1.6E-07 5.4E-12 106.3 11.4 102 650-752 13-116 (347)
171 2ra8_A Uncharacterized protein 98.6 2.2E-08 7.6E-13 113.0 4.1 137 689-844 169-318 (362)
172 3un9_A NLR family member X1; l 98.5 8.6E-09 3E-13 117.4 -0.5 63 689-751 180-251 (372)
173 2ra8_A Uncharacterized protein 98.5 5.9E-08 2E-12 109.5 6.2 135 613-750 164-318 (362)
174 3un9_A NLR family member X1; l 98.5 4.7E-09 1.6E-13 119.6 -3.0 87 645-731 155-254 (372)
175 3h4m_A Proteasome-activating n 98.5 8.4E-07 2.9E-11 97.3 13.7 184 180-392 12-230 (285)
176 2ifg_A High affinity nerve gro 98.5 3.3E-07 1.1E-11 103.7 10.5 98 579-677 13-112 (347)
177 1jbk_A CLPB protein; beta barr 98.4 5.5E-07 1.9E-11 92.0 10.4 50 183-234 20-69 (195)
178 3bos_A Putative DNA replicatio 98.4 4.5E-07 1.5E-11 96.5 10.1 175 183-392 26-216 (242)
179 3d8b_A Fidgetin-like protein 1 98.4 3.5E-06 1.2E-10 95.3 17.9 204 161-394 62-296 (357)
180 4fs7_A Uncharacterized protein 98.4 9.1E-06 3.1E-10 93.5 21.5 299 545-870 90-393 (394)
181 3pfi_A Holliday junction ATP-d 98.4 6.4E-06 2.2E-10 92.6 19.7 262 181-494 25-327 (338)
182 1sxj_A Activator 1 95 kDa subu 98.4 1.6E-06 5.6E-11 103.1 14.9 189 181-392 35-252 (516)
183 1sxj_D Activator 1 41 kDa subu 98.4 4.1E-06 1.4E-10 94.8 17.2 197 181-392 33-234 (353)
184 3te6_A Regulatory protein SIR3 98.4 2.6E-06 8.9E-11 93.3 14.2 169 185-362 20-212 (318)
185 2z4s_A Chromosomal replication 98.4 3.8E-06 1.3E-10 97.6 16.0 183 184-391 104-304 (440)
186 3eie_A Vacuolar protein sortin 98.3 8.5E-06 2.9E-10 90.8 17.7 185 180-393 13-228 (322)
187 2qz4_A Paraplegin; AAA+, SPG7, 98.3 5E-06 1.7E-10 89.7 15.4 183 183-392 4-221 (262)
188 3b9p_A CG5977-PA, isoform A; A 98.3 5.3E-06 1.8E-10 91.4 15.9 196 169-393 3-233 (297)
189 2qp9_X Vacuolar protein sortin 98.3 1E-05 3.4E-10 91.4 18.2 184 181-393 47-261 (355)
190 1d2n_A N-ethylmaleimide-sensit 98.3 4.7E-06 1.6E-10 90.5 14.0 171 185-385 33-229 (272)
191 1sxj_E Activator 1 40 kDa subu 98.3 1.7E-06 5.9E-11 98.1 10.8 200 181-392 10-236 (354)
192 3syl_A Protein CBBX; photosynt 98.3 5.2E-06 1.8E-10 92.1 14.0 152 186-363 32-219 (309)
193 1xwi_A SKD1 protein; VPS4B, AA 98.2 1.7E-05 5.9E-10 88.1 17.3 185 181-394 8-224 (322)
194 1l8q_A Chromosomal replication 98.2 1.5E-05 5E-10 89.0 16.7 177 184-388 10-203 (324)
195 2zan_A Vacuolar protein sortin 98.2 2.7E-05 9.3E-10 90.6 19.0 186 180-393 129-345 (444)
196 3uk6_A RUVB-like 2; hexameric 98.2 1.7E-05 5.7E-10 90.4 16.3 203 184-392 43-302 (368)
197 3vfd_A Spastin; ATPase, microt 98.2 1.5E-05 5.2E-10 91.3 15.7 185 180-393 110-326 (389)
198 3u61_B DNA polymerase accessor 98.1 6.9E-06 2.3E-10 91.8 10.8 180 181-389 22-212 (324)
199 3cf0_A Transitional endoplasmi 98.1 3.9E-05 1.3E-09 84.4 15.8 155 182-362 12-200 (301)
200 4gt6_A Cell surface protein; l 98.1 0.00014 4.8E-09 83.4 21.2 120 551-676 66-190 (394)
201 2p65_A Hypothetical protein PF 98.1 8.5E-06 2.9E-10 82.6 9.5 50 183-234 20-69 (187)
202 4h09_A Hypothetical leucine ri 98.1 0.00037 1.3E-08 79.5 24.2 59 780-840 281-340 (379)
203 3pvs_A Replication-associated 98.0 8.9E-06 3.1E-10 94.3 9.5 178 181-390 22-212 (447)
204 4b4t_J 26S protease regulatory 97.9 0.00016 5.5E-09 81.1 16.9 174 182-386 145-354 (405)
205 1in4_A RUVB, holliday junction 97.9 0.00031 1.1E-08 78.4 19.5 262 183-494 23-324 (334)
206 3hu3_A Transitional endoplasmi 97.9 4E-05 1.4E-09 89.7 11.8 180 184-392 203-414 (489)
207 1lv7_A FTSH; alpha/beta domain 97.9 0.00012 4E-09 78.6 14.5 54 181-234 8-71 (257)
208 3pxg_A Negative regulator of g 97.9 0.00012 4.1E-09 85.8 15.4 150 182-361 177-338 (468)
209 1a5t_A Delta prime, HOLB; zinc 97.9 0.00012 4.2E-09 81.8 14.7 183 192-393 9-205 (334)
210 4h09_A Hypothetical leucine ri 97.8 0.0018 6.3E-08 73.6 24.5 282 542-871 39-339 (379)
211 1sxj_C Activator 1 40 kDa subu 97.8 0.00012 4.2E-09 82.1 14.2 184 181-389 21-208 (340)
212 4b4t_M 26S protease regulatory 97.8 7.3E-05 2.5E-09 85.2 11.9 175 180-385 176-386 (434)
213 4gt6_A Cell surface protein; l 97.8 0.0009 3.1E-08 76.7 21.4 265 545-844 83-368 (394)
214 4b4t_H 26S protease regulatory 97.8 0.00027 9.1E-09 80.3 16.0 171 184-385 208-414 (467)
215 4b4t_L 26S protease subunit RP 97.8 0.00023 7.8E-09 81.2 15.5 173 183-386 179-387 (437)
216 3ec2_A DNA replication protein 97.8 8.4E-05 2.9E-09 74.9 10.1 27 207-233 37-63 (180)
217 1io0_A Tropomodulin; LRR prote 97.7 4.5E-06 1.5E-10 84.8 0.4 60 784-843 92-161 (185)
218 3n70_A Transport activator; si 97.7 7.7E-05 2.6E-09 72.2 8.6 47 186-232 2-48 (145)
219 1qvr_A CLPB protein; coiled co 97.7 9.8E-05 3.4E-09 93.4 11.5 157 182-361 167-345 (854)
220 4b4t_K 26S protease regulatory 97.7 0.00016 5.5E-09 82.4 11.9 54 183-236 170-234 (428)
221 1ofh_A ATP-dependent HSL prote 97.7 0.00017 5.7E-09 79.7 11.9 50 185-234 15-76 (310)
222 2r62_A Cell division protease 97.7 2.3E-05 7.9E-10 84.8 4.4 153 183-361 9-196 (268)
223 2ce7_A Cell division protein F 97.6 0.00039 1.3E-08 80.6 14.8 175 183-386 14-221 (476)
224 4b4t_I 26S protease regulatory 97.6 0.00044 1.5E-08 77.7 14.6 175 182-385 179-387 (437)
225 2w58_A DNAI, primosome compone 97.6 0.00011 3.8E-09 75.6 8.8 59 184-242 24-88 (202)
226 1io0_A Tropomodulin; LRR prote 97.5 1.6E-05 5.6E-10 80.6 1.0 15 593-607 32-46 (185)
227 3e4g_A ATP synthase subunit S, 97.5 4.7E-05 1.6E-09 75.3 3.9 39 669-707 115-154 (176)
228 3pxi_A Negative regulator of g 97.5 0.00054 1.8E-08 85.6 14.5 150 182-361 177-338 (758)
229 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00055 1.9E-08 85.7 14.5 156 183-361 184-362 (758)
230 3e4g_A ATP synthase subunit S, 97.5 4.5E-05 1.6E-09 75.4 3.5 86 669-754 62-154 (176)
231 3t15_A Ribulose bisphosphate c 97.5 0.00052 1.8E-08 75.0 11.8 29 207-235 35-63 (293)
232 2bjv_A PSP operon transcriptio 97.4 0.00057 2E-08 73.5 11.8 49 185-233 6-54 (265)
233 3rw6_A Nuclear RNA export fact 97.3 0.00016 5.5E-09 77.1 5.5 68 782-850 167-237 (267)
234 4fcw_A Chaperone protein CLPB; 97.3 0.00059 2E-08 75.4 9.9 50 185-234 17-73 (311)
235 1ojl_A Transcriptional regulat 97.3 0.00039 1.3E-08 76.3 8.1 48 185-232 2-49 (304)
236 3m6a_A ATP-dependent protease 97.3 0.0015 5E-08 77.9 13.5 52 185-236 81-136 (543)
237 2c9o_A RUVB-like 1; hexameric 97.3 0.0017 5.9E-08 75.7 13.8 51 183-233 35-88 (456)
238 3cf2_A TER ATPase, transitiona 97.2 0.00088 3E-08 82.2 10.9 173 184-386 203-407 (806)
239 3co5_A Putative two-component 97.2 0.00017 5.8E-09 69.5 3.4 48 185-232 4-51 (143)
240 1ixz_A ATP-dependent metallopr 97.2 0.0028 9.4E-08 67.6 13.3 52 182-233 13-74 (254)
241 1iy2_A ATP-dependent metallopr 97.2 0.0032 1.1E-07 68.1 13.7 53 181-233 36-98 (278)
242 2gno_A DNA polymerase III, gam 97.1 0.0025 8.4E-08 69.7 11.8 146 189-361 1-152 (305)
243 3rw6_A Nuclear RNA export fact 97.1 0.00023 7.8E-09 75.9 3.4 40 620-659 169-210 (267)
244 2x8a_A Nuclear valosin-contain 97.1 0.0045 1.5E-07 66.7 13.6 124 211-361 47-191 (274)
245 1eiw_A Hypothetical protein MT 97.0 0.00054 1.8E-08 61.7 4.7 72 12-106 3-74 (111)
246 3pxi_A Negative regulator of g 97.0 0.0028 9.5E-08 79.1 12.7 150 185-361 491-675 (758)
247 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0044 1.5E-07 72.2 13.2 172 182-386 28-236 (499)
248 1ypw_A Transitional endoplasmi 96.9 0.002 6.8E-08 80.4 10.8 152 183-361 202-385 (806)
249 2kjq_A DNAA-related protein; s 96.9 0.0013 4.4E-08 63.7 7.0 28 207-234 35-62 (149)
250 1um8_A ATP-dependent CLP prote 96.7 0.0057 1.9E-07 69.4 11.6 26 208-233 72-97 (376)
251 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0075 2.6E-07 75.3 8.9 49 185-233 458-513 (758)
252 2qgz_A Helicase loader, putati 96.1 0.0081 2.8E-07 65.8 7.5 59 184-242 123-187 (308)
253 3cf2_A TER ATPase, transitiona 96.0 0.0068 2.3E-07 74.4 7.0 151 184-361 476-661 (806)
254 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.007 2.4E-07 65.5 6.0 24 208-231 123-146 (331)
255 2cvh_A DNA repair and recombin 95.9 0.0083 2.8E-07 62.1 6.3 35 196-230 8-42 (220)
256 1ye8_A Protein THEP1, hypothet 95.8 0.092 3.1E-06 52.2 13.0 24 210-233 2-25 (178)
257 1j8m_F SRP54, signal recogniti 95.7 0.1 3.6E-06 56.5 14.0 28 208-235 98-125 (297)
258 1qvr_A CLPB protein; coiled co 95.7 0.028 9.7E-07 70.9 10.9 50 185-234 558-614 (854)
259 1vma_A Cell division protein F 95.7 0.087 3E-06 57.3 13.3 36 207-243 103-138 (306)
260 3lw7_A Adenylate kinase relate 95.7 0.052 1.8E-06 53.5 10.8 20 209-228 2-21 (179)
261 1g5t_A COB(I)alamin adenosyltr 95.6 0.019 6.6E-07 57.4 7.3 27 209-235 29-55 (196)
262 2b8t_A Thymidine kinase; deoxy 95.4 0.011 3.7E-07 61.1 4.7 112 207-329 11-126 (223)
263 1zu4_A FTSY; GTPase, signal re 95.3 0.072 2.4E-06 58.4 11.0 36 207-243 104-139 (320)
264 1ypw_A Transitional endoplasmi 95.2 0.0068 2.3E-07 75.6 2.7 53 184-236 476-539 (806)
265 3hr8_A Protein RECA; alpha and 95.2 0.028 9.7E-07 62.3 7.4 50 194-243 46-96 (356)
266 2eyu_A Twitching motility prot 95.1 0.069 2.4E-06 56.7 10.0 110 207-331 24-135 (261)
267 2q6t_A DNAB replication FORK h 95.0 0.19 6.5E-06 58.0 14.0 53 189-242 182-235 (444)
268 3bh0_A DNAB-like replicative h 94.9 0.1 3.5E-06 57.3 11.0 54 189-243 50-103 (315)
269 3dm5_A SRP54, signal recogniti 94.9 0.47 1.6E-05 53.9 16.7 29 207-235 99-127 (443)
270 3c8u_A Fructokinase; YP_612366 94.9 0.022 7.6E-07 58.4 5.4 39 195-233 9-47 (208)
271 3hyn_A Putative signal transdu 94.9 0.12 4.2E-06 49.8 9.8 106 13-123 5-134 (189)
272 3jvv_A Twitching mobility prot 94.8 0.051 1.7E-06 60.5 8.2 110 209-332 124-234 (356)
273 2r44_A Uncharacterized protein 94.7 0.019 6.6E-07 63.7 4.6 48 184-235 26-73 (331)
274 3umf_A Adenylate kinase; rossm 94.7 0.078 2.7E-06 54.4 8.7 27 206-232 27-53 (217)
275 1qhx_A CPT, protein (chloramph 94.7 0.014 4.8E-07 58.1 3.0 25 209-233 4-28 (178)
276 1sky_E F1-ATPase, F1-ATP synth 94.6 0.058 2E-06 61.6 8.1 39 209-247 152-190 (473)
277 1rz3_A Hypothetical protein rb 94.6 0.044 1.5E-06 55.8 6.6 45 190-234 3-48 (201)
278 3sr0_A Adenylate kinase; phosp 94.6 0.048 1.7E-06 55.6 6.8 88 210-309 2-93 (206)
279 3hws_A ATP-dependent CLP prote 94.6 0.022 7.6E-07 64.1 4.6 48 186-233 16-76 (363)
280 1pgv_A TMD-1, tropomodulin TMD 94.6 0.0078 2.7E-07 60.5 0.7 57 785-841 98-165 (197)
281 4a1f_A DNAB helicase, replicat 94.5 0.029 9.9E-07 61.8 5.1 46 188-234 27-72 (338)
282 3dzd_A Transcriptional regulat 94.4 4.2 0.00014 45.3 22.8 48 185-232 129-176 (368)
283 2ewv_A Twitching motility prot 94.3 0.15 5E-06 57.3 10.7 111 207-330 135-245 (372)
284 3kb2_A SPBC2 prophage-derived 94.3 0.02 7E-07 56.5 3.2 25 209-233 2-26 (173)
285 3vaa_A Shikimate kinase, SK; s 94.2 0.025 8.4E-07 57.6 3.5 26 208-233 25-50 (199)
286 3rfe_A Platelet glycoprotein I 94.1 0.08 2.7E-06 49.5 6.6 55 788-844 11-66 (130)
287 3trf_A Shikimate kinase, SK; a 94.1 0.025 8.5E-07 56.7 3.3 26 208-233 5-30 (185)
288 3ice_A Transcription terminati 94.1 0.042 1.4E-06 60.6 5.2 30 207-236 173-202 (422)
289 1jr3_D DNA polymerase III, del 94.0 0.24 8.4E-06 54.9 11.7 156 207-391 17-183 (343)
290 3e70_C DPA, signal recognition 94.0 0.093 3.2E-06 57.7 8.0 36 206-242 127-162 (328)
291 1odf_A YGR205W, hypothetical 3 94.0 0.048 1.6E-06 58.9 5.5 30 205-234 28-57 (290)
292 1xp8_A RECA protein, recombina 94.0 0.11 3.8E-06 57.9 8.6 51 193-243 58-109 (366)
293 3bgw_A DNAB-like replicative h 94.0 0.48 1.6E-05 54.5 14.1 46 189-235 179-224 (444)
294 1pgv_A TMD-1, tropomodulin TMD 93.9 0.013 4.6E-07 58.8 0.9 95 710-822 64-169 (197)
295 2ga8_A Hypothetical 39.9 kDa p 93.9 0.043 1.5E-06 60.3 4.9 47 190-236 4-52 (359)
296 2r6a_A DNAB helicase, replicat 93.9 0.34 1.2E-05 56.1 12.8 48 194-242 190-238 (454)
297 3kl4_A SRP54, signal recogniti 93.8 0.53 1.8E-05 53.5 13.9 29 207-235 96-124 (433)
298 2zr9_A Protein RECA, recombina 93.7 0.072 2.4E-06 59.2 6.4 50 194-243 46-96 (349)
299 3io5_A Recombination and repai 93.7 0.077 2.6E-06 57.1 6.3 34 210-243 30-65 (333)
300 1g8p_A Magnesium-chelatase 38 93.6 0.037 1.3E-06 61.8 4.0 51 181-233 20-70 (350)
301 2xxa_A Signal recognition part 93.6 0.19 6.6E-06 57.4 9.9 30 206-235 98-127 (433)
302 2rhm_A Putative kinase; P-loop 93.5 0.046 1.6E-06 55.0 4.2 25 208-232 5-29 (193)
303 1nks_A Adenylate kinase; therm 93.5 0.061 2.1E-06 54.0 5.1 26 209-234 2-27 (194)
304 1s96_A Guanylate kinase, GMP k 93.5 0.14 4.9E-06 52.6 7.8 27 207-233 15-41 (219)
305 1zp6_A Hypothetical protein AT 93.4 0.04 1.4E-06 55.4 3.5 24 208-231 9-32 (191)
306 1ex7_A Guanylate kinase; subst 93.4 0.027 9.3E-07 56.3 2.1 28 209-236 2-29 (186)
307 3uie_A Adenylyl-sulfate kinase 93.4 0.048 1.6E-06 55.5 4.0 27 207-233 24-50 (200)
308 1ly1_A Polynucleotide kinase; 93.4 0.04 1.4E-06 54.7 3.4 22 209-230 3-24 (181)
309 3iij_A Coilin-interacting nucl 93.4 0.034 1.2E-06 55.5 2.8 25 208-232 11-35 (180)
310 1kgd_A CASK, peripheral plasma 93.4 0.038 1.3E-06 55.2 3.1 26 208-233 5-30 (180)
311 1xjc_A MOBB protein homolog; s 93.3 0.058 2E-06 52.9 4.3 35 207-241 3-38 (169)
312 1zuh_A Shikimate kinase; alpha 93.3 0.042 1.4E-06 54.0 3.4 26 208-233 7-32 (168)
313 4eun_A Thermoresistant glucoki 93.3 0.057 2E-06 54.8 4.5 26 207-232 28-53 (200)
314 1kag_A SKI, shikimate kinase I 93.3 0.032 1.1E-06 55.1 2.5 25 209-233 5-29 (173)
315 3tlx_A Adenylate kinase 2; str 93.3 0.064 2.2E-06 56.4 4.8 27 206-232 27-53 (243)
316 2px0_A Flagellar biosynthesis 93.2 0.44 1.5E-05 51.4 11.5 28 207-234 104-131 (296)
317 3nbx_X ATPase RAVA; AAA+ ATPas 93.1 0.041 1.4E-06 64.2 3.2 45 185-233 22-66 (500)
318 2yvu_A Probable adenylyl-sulfa 93.1 0.085 2.9E-06 52.8 5.3 28 207-234 12-39 (186)
319 1v5w_A DMC1, meiotic recombina 93.0 0.17 5.9E-06 56.1 8.2 38 195-232 109-146 (343)
320 1kht_A Adenylate kinase; phosp 93.0 0.05 1.7E-06 54.6 3.5 26 209-234 4-29 (192)
321 2jaq_A Deoxyguanosine kinase; 93.0 0.047 1.6E-06 55.5 3.3 25 210-234 2-26 (205)
322 3t61_A Gluconokinase; PSI-biol 93.0 0.041 1.4E-06 56.1 2.7 25 208-232 18-42 (202)
323 1via_A Shikimate kinase; struc 92.9 0.049 1.7E-06 54.0 3.1 24 210-233 6-29 (175)
324 2c95_A Adenylate kinase 1; tra 92.9 0.056 1.9E-06 54.6 3.6 26 208-233 9-34 (196)
325 2ze6_A Isopentenyl transferase 92.9 0.054 1.8E-06 57.4 3.6 25 209-233 2-26 (253)
326 1knq_A Gluconate kinase; ALFA/ 92.9 0.069 2.4E-06 52.8 4.2 25 208-232 8-32 (175)
327 2bdt_A BH3686; alpha-beta prot 92.8 0.078 2.7E-06 53.2 4.5 22 209-230 3-24 (189)
328 2iyv_A Shikimate kinase, SK; t 92.8 0.045 1.5E-06 54.7 2.6 25 209-233 3-27 (184)
329 3a00_A Guanylate kinase, GMP k 92.7 0.05 1.7E-06 54.6 2.8 29 209-237 2-30 (186)
330 1tev_A UMP-CMP kinase; ploop, 92.6 0.066 2.3E-06 53.9 3.8 25 208-232 3-27 (196)
331 3tau_A Guanylate kinase, GMP k 92.6 0.047 1.6E-06 55.9 2.6 28 207-234 7-34 (208)
332 2vli_A Antibiotic resistance p 92.6 0.046 1.6E-06 54.5 2.4 26 208-233 5-30 (183)
333 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.15 5.2E-06 56.2 6.8 88 209-310 172-259 (330)
334 1nn5_A Similar to deoxythymidy 92.6 0.098 3.3E-06 53.6 5.0 28 208-235 9-36 (215)
335 1tue_A Replication protein E1; 92.6 0.076 2.6E-06 53.3 3.9 42 192-234 43-84 (212)
336 2yhs_A FTSY, cell division pro 92.5 0.36 1.2E-05 55.5 9.8 36 207-243 292-327 (503)
337 1y63_A LMAJ004144AAA protein; 92.5 0.068 2.3E-06 53.5 3.5 25 207-231 9-33 (184)
338 2bwj_A Adenylate kinase 5; pho 92.5 0.066 2.3E-06 54.2 3.5 25 209-233 13-37 (199)
339 1e6c_A Shikimate kinase; phosp 92.5 0.053 1.8E-06 53.5 2.7 25 209-233 3-27 (173)
340 3cm0_A Adenylate kinase; ATP-b 92.5 0.075 2.6E-06 53.1 3.8 26 208-233 4-29 (186)
341 1ukz_A Uridylate kinase; trans 92.4 0.073 2.5E-06 54.1 3.7 26 207-232 14-39 (203)
342 2ck3_D ATP synthase subunit be 92.4 0.24 8.3E-06 56.3 8.1 39 208-247 153-192 (482)
343 2qor_A Guanylate kinase; phosp 92.4 0.053 1.8E-06 55.3 2.6 27 207-233 11-37 (204)
344 2plr_A DTMP kinase, probable t 92.3 0.079 2.7E-06 54.2 3.9 27 209-235 5-31 (213)
345 1g41_A Heat shock protein HSLU 92.3 0.079 2.7E-06 60.4 4.1 51 185-235 15-77 (444)
346 2pt5_A Shikimate kinase, SK; a 92.3 0.073 2.5E-06 52.1 3.4 24 210-233 2-25 (168)
347 3gmt_A Adenylate kinase; ssgci 92.2 0.45 1.5E-05 49.0 9.3 23 210-232 10-32 (230)
348 3ney_A 55 kDa erythrocyte memb 92.2 0.066 2.3E-06 53.9 3.0 27 207-233 18-44 (197)
349 1fx0_B ATP synthase beta chain 92.2 0.23 8E-06 56.7 7.7 40 207-247 164-204 (498)
350 1qf9_A UMP/CMP kinase, protein 92.1 0.087 3E-06 52.9 3.9 26 208-233 6-31 (194)
351 2wwf_A Thymidilate kinase, put 92.1 0.086 2.9E-06 53.9 3.8 28 208-235 10-37 (212)
352 1aky_A Adenylate kinase; ATP:A 92.1 0.074 2.5E-06 54.9 3.4 26 208-233 4-29 (220)
353 3a4m_A L-seryl-tRNA(SEC) kinas 92.1 0.085 2.9E-06 56.1 3.9 26 208-233 4-29 (260)
354 2cdn_A Adenylate kinase; phosp 92.1 0.088 3E-06 53.4 3.8 26 208-233 20-45 (201)
355 3asz_A Uridine kinase; cytidin 92.0 0.099 3.4E-06 53.5 4.2 27 207-233 5-31 (211)
356 1uf9_A TT1252 protein; P-loop, 92.0 0.09 3.1E-06 53.3 3.8 26 206-231 6-31 (203)
357 3tr0_A Guanylate kinase, GMP k 91.9 0.08 2.7E-06 53.8 3.4 25 208-232 7-31 (205)
358 1cke_A CK, MSSA, protein (cyti 91.9 0.083 2.8E-06 54.7 3.5 25 209-233 6-30 (227)
359 2if2_A Dephospho-COA kinase; a 91.9 0.083 2.8E-06 53.8 3.4 21 210-230 3-23 (204)
360 2qt1_A Nicotinamide riboside k 91.9 0.099 3.4E-06 53.4 3.9 26 207-232 20-45 (207)
361 1gvn_B Zeta; postsegregational 91.8 0.12 4.1E-06 55.8 4.8 26 207-232 32-57 (287)
362 2w0m_A SSO2452; RECA, SSPF, un 91.8 0.13 4.5E-06 53.3 4.9 28 207-234 22-49 (235)
363 2j41_A Guanylate kinase; GMP, 91.8 0.086 2.9E-06 53.7 3.4 25 208-232 6-30 (207)
364 2pbr_A DTMP kinase, thymidylat 91.7 0.091 3.1E-06 52.8 3.5 25 210-234 2-26 (195)
365 3k1j_A LON protease, ATP-depen 91.7 0.094 3.2E-06 63.3 4.1 52 180-235 36-87 (604)
366 3p32_A Probable GTPase RV1496/ 91.7 0.22 7.5E-06 55.6 6.9 39 196-234 67-105 (355)
367 2bbw_A Adenylate kinase 4, AK4 91.7 0.091 3.1E-06 55.3 3.6 26 208-233 27-52 (246)
368 1uj2_A Uridine-cytidine kinase 91.7 0.094 3.2E-06 55.5 3.7 28 207-234 21-48 (252)
369 3tqc_A Pantothenate kinase; bi 91.7 0.13 4.3E-06 56.3 4.7 47 188-234 70-118 (321)
370 2dr3_A UPF0273 protein PH0284; 91.6 0.12 4E-06 54.3 4.3 37 207-243 22-58 (247)
371 2pez_A Bifunctional 3'-phospho 91.6 0.11 3.8E-06 51.6 3.9 28 207-234 4-31 (179)
372 2og2_A Putative signal recogni 91.5 0.25 8.5E-06 54.8 6.9 36 207-243 156-191 (359)
373 4gp7_A Metallophosphoesterase; 91.5 0.08 2.7E-06 52.3 2.6 23 207-229 8-30 (171)
374 3nwj_A ATSK2; P loop, shikimat 91.4 0.08 2.7E-06 55.7 2.7 25 209-233 49-73 (250)
375 4a74_A DNA repair and recombin 91.4 0.11 3.7E-06 53.9 3.8 27 207-233 24-50 (231)
376 1zak_A Adenylate kinase; ATP:A 91.4 0.089 3E-06 54.4 3.0 26 208-233 5-30 (222)
377 1rj9_A FTSY, signal recognitio 91.4 0.15 5.3E-06 55.3 5.0 36 207-243 101-136 (304)
378 1zd8_A GTP:AMP phosphotransfer 91.3 0.092 3.1E-06 54.5 3.1 25 208-232 7-31 (227)
379 1gtv_A TMK, thymidylate kinase 91.2 0.076 2.6E-06 54.4 2.3 25 210-234 2-26 (214)
380 2grj_A Dephospho-COA kinase; T 91.2 0.11 3.8E-06 52.3 3.4 26 207-232 11-36 (192)
381 3fwy_A Light-independent proto 91.2 0.12 4.2E-06 56.4 3.9 29 206-234 46-74 (314)
382 3fb4_A Adenylate kinase; psych 91.1 0.11 3.9E-06 53.3 3.5 23 210-232 2-24 (216)
383 1jjv_A Dephospho-COA kinase; P 91.1 0.11 3.6E-06 53.1 3.2 22 209-230 3-24 (206)
384 2z0h_A DTMP kinase, thymidylat 91.1 0.12 4E-06 52.2 3.5 25 210-234 2-26 (197)
385 1n0w_A DNA repair protein RAD5 91.1 0.15 5.3E-06 53.2 4.6 37 196-232 12-48 (243)
386 2wsm_A Hydrogenase expression/ 91.1 0.21 7.3E-06 51.3 5.6 41 193-235 17-57 (221)
387 1m7g_A Adenylylsulfate kinase; 91.1 0.14 4.8E-06 52.4 4.1 27 207-233 24-50 (211)
388 1lvg_A Guanylate kinase, GMP k 91.0 0.092 3.1E-06 53.2 2.5 26 208-233 4-29 (198)
389 3l0o_A Transcription terminati 91.0 0.088 3E-06 58.0 2.5 29 207-235 174-202 (427)
390 2hf9_A Probable hydrogenase ni 90.9 0.22 7.5E-06 51.4 5.5 29 207-235 37-65 (226)
391 4e22_A Cytidylate kinase; P-lo 90.8 0.11 3.9E-06 54.8 3.2 26 208-233 27-52 (252)
392 3dl0_A Adenylate kinase; phosp 90.7 0.12 4.1E-06 53.1 3.1 23 210-232 2-24 (216)
393 3aez_A Pantothenate kinase; tr 90.7 0.15 5.1E-06 55.7 4.0 29 206-234 88-116 (312)
394 3be4_A Adenylate kinase; malar 90.7 0.13 4.6E-06 52.8 3.5 24 209-232 6-29 (217)
395 2jeo_A Uridine-cytidine kinase 90.5 0.16 5.4E-06 53.5 3.9 26 207-232 24-49 (245)
396 2r2a_A Uncharacterized protein 90.5 0.41 1.4E-05 48.3 6.9 22 210-231 7-28 (199)
397 2ehv_A Hypothetical protein PH 90.5 0.17 5.9E-06 53.1 4.3 24 207-230 29-52 (251)
398 2p5t_B PEZT; postsegregational 90.5 0.12 4.1E-06 54.7 3.0 27 207-233 31-57 (253)
399 2j37_W Signal recognition part 90.4 0.64 2.2E-05 54.0 9.2 30 206-235 99-128 (504)
400 3b9q_A Chloroplast SRP recepto 90.3 0.23 7.8E-06 53.9 5.1 36 207-243 99-134 (302)
401 1znw_A Guanylate kinase, GMP k 90.3 0.13 4.6E-06 52.4 3.1 26 208-233 20-45 (207)
402 2v54_A DTMP kinase, thymidylat 90.3 0.15 5E-06 51.8 3.4 25 208-232 4-28 (204)
403 1u94_A RECA protein, recombina 90.3 0.21 7.1E-06 55.5 4.9 50 194-243 48-98 (356)
404 3upu_A ATP-dependent DNA helic 90.3 0.9 3.1E-05 52.6 10.5 28 209-236 46-73 (459)
405 1htw_A HI0065; nucleotide-bind 90.2 0.18 6.1E-06 48.9 3.7 26 207-232 32-57 (158)
406 3ake_A Cytidylate kinase; CMP 90.2 0.16 5.4E-06 51.7 3.5 24 210-233 4-27 (208)
407 2f6r_A COA synthase, bifunctio 90.2 0.16 5.6E-06 54.6 3.8 24 207-230 74-97 (281)
408 3r20_A Cytidylate kinase; stru 90.1 0.16 5.3E-06 52.7 3.4 26 208-233 9-34 (233)
409 2f1r_A Molybdopterin-guanine d 90.1 0.13 4.5E-06 50.6 2.7 27 209-235 3-29 (171)
410 3d3q_A TRNA delta(2)-isopenten 90.1 0.16 5.3E-06 55.7 3.5 25 209-233 8-32 (340)
411 1ak2_A Adenylate kinase isoenz 90.1 0.17 5.6E-06 52.8 3.6 26 208-233 16-41 (233)
412 1e4v_A Adenylate kinase; trans 90.0 0.17 5.9E-06 51.8 3.7 23 210-232 2-24 (214)
413 1z6g_A Guanylate kinase; struc 90.0 0.13 4.4E-06 53.0 2.7 25 208-232 23-47 (218)
414 1np6_A Molybdopterin-guanine d 89.9 0.18 6.2E-06 49.7 3.5 27 208-234 6-32 (174)
415 2xb4_A Adenylate kinase; ATP-b 89.8 0.17 5.9E-06 52.3 3.5 23 210-232 2-24 (223)
416 1ny5_A Transcriptional regulat 89.8 2 6.7E-05 48.4 12.5 48 185-232 137-184 (387)
417 3e1s_A Exodeoxyribonuclease V, 89.8 0.84 2.9E-05 54.3 9.8 27 209-235 205-231 (574)
418 1vht_A Dephospho-COA kinase; s 89.7 0.19 6.4E-06 51.7 3.6 23 208-230 4-26 (218)
419 1cr0_A DNA primase/helicase; R 89.7 0.27 9.1E-06 53.3 5.0 29 207-235 34-62 (296)
420 1a7j_A Phosphoribulokinase; tr 89.6 0.13 4.5E-06 55.5 2.4 27 207-233 4-30 (290)
421 3crm_A TRNA delta(2)-isopenten 89.5 0.16 5.6E-06 55.2 3.1 25 209-233 6-30 (323)
422 2i3b_A HCR-ntpase, human cance 89.4 0.17 5.8E-06 50.7 2.9 24 210-233 3-26 (189)
423 1svm_A Large T antigen; AAA+ f 89.2 0.27 9.2E-06 55.0 4.7 28 205-232 166-193 (377)
424 1sq5_A Pantothenate kinase; P- 89.1 0.25 8.5E-06 53.9 4.2 28 206-233 78-105 (308)
425 1u0j_A DNA replication protein 89.0 0.31 1.1E-05 51.3 4.7 38 195-232 91-128 (267)
426 3a8t_A Adenylate isopentenyltr 89.0 0.15 5.1E-06 55.7 2.3 26 208-233 40-65 (339)
427 2zts_A Putative uncharacterize 88.7 0.19 6.4E-06 52.8 2.9 25 207-231 29-53 (251)
428 1yrb_A ATP(GTP)binding protein 88.6 0.38 1.3E-05 50.9 5.2 27 207-233 13-39 (262)
429 3lnc_A Guanylate kinase, GMP k 88.5 0.16 5.4E-06 52.9 2.1 25 208-232 27-52 (231)
430 1q3t_A Cytidylate kinase; nucl 88.5 0.26 8.9E-06 51.4 3.7 27 206-232 14-40 (236)
431 3exa_A TRNA delta(2)-isopenten 88.4 0.22 7.5E-06 53.6 3.1 25 208-232 3-27 (322)
432 1q57_A DNA primase/helicase; d 88.4 1.5 5.2E-05 51.3 10.7 37 206-242 240-277 (503)
433 1g8f_A Sulfate adenylyltransfe 88.2 0.34 1.2E-05 56.3 4.8 28 207-234 394-421 (511)
434 3cmu_A Protein RECA, recombina 88.2 0.42 1.4E-05 64.0 6.2 48 196-243 1414-1462(2050)
435 1puj_A YLQF, conserved hypothe 88.2 2.4 8.2E-05 45.3 11.2 49 57-110 13-61 (282)
436 1nlf_A Regulatory protein REPA 88.1 0.38 1.3E-05 51.6 4.9 27 208-234 30-56 (279)
437 4eaq_A DTMP kinase, thymidylat 88.1 0.32 1.1E-05 50.5 4.0 28 207-234 25-52 (229)
438 3foz_A TRNA delta(2)-isopenten 88.0 0.26 8.9E-06 53.0 3.3 26 207-232 9-34 (316)
439 1ltq_A Polynucleotide kinase; 88.0 0.25 8.7E-06 53.6 3.4 23 209-231 3-25 (301)
440 3vr4_D V-type sodium ATPase su 88.0 0.31 1.1E-05 55.1 4.1 26 209-234 152-177 (465)
441 3b85_A Phosphate starvation-in 88.0 0.22 7.5E-06 50.8 2.7 23 209-231 23-45 (208)
442 2onk_A Molybdate/tungstate ABC 87.9 0.25 8.5E-06 51.6 3.1 24 206-230 23-46 (240)
443 2qmh_A HPR kinase/phosphorylas 87.8 0.22 7.6E-06 49.7 2.5 25 208-232 34-58 (205)
444 2p67_A LAO/AO transport system 87.8 0.65 2.2E-05 51.4 6.6 29 206-234 54-82 (341)
445 1ls1_A Signal recognition part 87.8 0.46 1.6E-05 51.3 5.2 36 207-243 97-132 (295)
446 2z43_A DNA repair and recombin 87.8 0.39 1.3E-05 52.7 4.8 39 195-233 94-132 (324)
447 2r8r_A Sensor protein; KDPD, P 87.7 0.45 1.5E-05 48.6 4.7 26 210-235 8-33 (228)
448 1pzn_A RAD51, DNA repair and r 87.6 0.31 1E-05 54.2 3.8 36 197-232 120-155 (349)
449 2pcj_A ABC transporter, lipopr 87.6 0.23 8E-06 51.3 2.6 23 208-230 30-52 (224)
450 2ocp_A DGK, deoxyguanosine kin 87.6 0.31 1.1E-05 51.0 3.6 26 208-233 2-27 (241)
451 3end_A Light-independent proto 87.6 0.46 1.6E-05 51.7 5.2 30 206-235 39-68 (307)
452 3rfe_A Platelet glycoprotein I 87.5 0.7 2.4E-05 43.0 5.6 26 650-677 13-40 (130)
453 2j9r_A Thymidine kinase; TK1, 87.5 1.7 6E-05 43.9 8.8 110 207-330 27-139 (214)
454 3cr8_A Sulfate adenylyltranfer 87.4 0.47 1.6E-05 55.9 5.4 28 207-234 368-395 (552)
455 1oix_A RAS-related protein RAB 87.3 0.31 1.1E-05 48.8 3.4 24 208-231 29-52 (191)
456 2fz4_A DNA repair protein RAD2 87.3 3 0.0001 43.2 11.1 38 190-232 95-132 (237)
457 3tif_A Uncharacterized ABC tra 87.2 0.24 8.3E-06 51.6 2.5 24 207-230 30-53 (235)
458 2orw_A Thymidine kinase; TMTK, 87.2 0.48 1.6E-05 47.2 4.6 25 209-233 4-28 (184)
459 2axn_A 6-phosphofructo-2-kinas 87.2 0.48 1.6E-05 55.7 5.3 30 207-236 34-63 (520)
460 1cp2_A CP2, nitrogenase iron p 87.0 0.55 1.9E-05 49.9 5.3 27 209-235 2-28 (269)
461 3zvl_A Bifunctional polynucleo 86.9 0.23 8E-06 56.6 2.4 27 206-232 256-282 (416)
462 2v3c_C SRP54, signal recogniti 86.9 0.31 1.1E-05 55.6 3.4 29 207-235 98-126 (432)
463 2dyk_A GTP-binding protein; GT 86.7 0.37 1.3E-05 46.2 3.4 22 209-230 2-23 (161)
464 3eph_A TRNA isopentenyltransfe 86.7 0.38 1.3E-05 53.7 3.8 25 209-233 3-27 (409)
465 2afh_E Nitrogenase iron protei 86.7 0.55 1.9E-05 50.6 5.1 27 209-235 3-29 (289)
466 2cbz_A Multidrug resistance-as 86.6 0.28 9.6E-06 51.2 2.6 26 207-232 30-55 (237)
467 4hlc_A DTMP kinase, thymidylat 86.6 0.53 1.8E-05 47.8 4.6 29 209-237 3-31 (205)
468 2d2e_A SUFC protein; ABC-ATPas 86.5 0.32 1.1E-05 51.2 3.0 24 208-231 29-52 (250)
469 3gfo_A Cobalt import ATP-bindi 86.5 0.28 9.5E-06 52.4 2.5 23 208-230 34-56 (275)
470 2v9p_A Replication protein E1; 86.5 0.34 1.2E-05 52.3 3.2 27 206-232 124-150 (305)
471 3ea0_A ATPase, para family; al 86.3 0.67 2.3E-05 48.3 5.4 37 207-243 3-40 (245)
472 2qm8_A GTPase/ATPase; G protei 86.3 0.81 2.8E-05 50.4 6.2 29 206-234 53-81 (337)
473 1b0u_A Histidine permease; ABC 86.3 0.29 9.9E-06 51.9 2.5 24 207-230 31-54 (262)
474 2zu0_C Probable ATP-dependent 86.2 0.34 1.2E-05 51.5 3.0 25 207-231 45-69 (267)
475 2wji_A Ferrous iron transport 86.2 0.39 1.3E-05 46.7 3.2 22 209-230 4-25 (165)
476 3cmw_A Protein RECA, recombina 86.1 1.1 3.9E-05 59.2 8.4 96 195-300 1417-1518(1706)
477 3llm_A ATP-dependent RNA helic 86.1 2 7E-05 44.4 9.0 21 209-229 77-97 (235)
478 1ji0_A ABC transporter; ATP bi 86.1 0.3 1E-05 51.0 2.5 23 208-230 32-54 (240)
479 2olj_A Amino acid ABC transpor 86.1 0.31 1E-05 51.7 2.6 24 207-230 49-72 (263)
480 3cmw_A Protein RECA, recombina 86.0 1 3.6E-05 59.6 8.0 55 189-243 712-767 (1706)
481 4g1u_C Hemin import ATP-bindin 86.0 0.3 1E-05 51.9 2.5 24 208-231 37-60 (266)
482 2qi9_C Vitamin B12 import ATP- 86.0 0.27 9.1E-06 51.7 2.0 33 208-242 26-58 (249)
483 1mv5_A LMRA, multidrug resista 85.9 0.35 1.2E-05 50.7 2.9 24 207-230 27-50 (243)
484 1sgw_A Putative ABC transporte 85.9 0.27 9.2E-06 50.3 1.9 24 208-231 35-58 (214)
485 1g6h_A High-affinity branched- 85.9 0.31 1.1E-05 51.5 2.5 23 208-230 33-55 (257)
486 3fdi_A Uncharacterized protein 85.8 0.43 1.5E-05 48.3 3.5 26 209-234 7-32 (201)
487 2f9l_A RAB11B, member RAS onco 85.8 0.39 1.3E-05 48.3 3.2 23 208-230 5-27 (199)
488 2pze_A Cystic fibrosis transme 85.8 0.32 1.1E-05 50.4 2.5 25 208-232 34-58 (229)
489 2ff7_A Alpha-hemolysin translo 85.7 0.32 1.1E-05 51.0 2.5 23 208-230 35-57 (247)
490 1vpl_A ABC transporter, ATP-bi 85.6 0.33 1.1E-05 51.2 2.5 24 207-230 40-63 (256)
491 2ffh_A Protein (FFH); SRP54, s 85.5 0.68 2.3E-05 52.5 5.2 35 207-242 97-131 (425)
492 3gqb_B V-type ATP synthase bet 85.5 0.6 2.1E-05 52.8 4.7 26 208-233 147-172 (464)
493 2ghi_A Transport protein; mult 85.4 0.35 1.2E-05 51.2 2.6 26 207-232 45-70 (260)
494 2r9v_A ATP synthase subunit al 85.4 0.92 3.2E-05 51.9 6.1 38 208-247 175-213 (515)
495 2ck3_A ATP synthase subunit al 85.4 0.63 2.2E-05 53.4 4.8 26 208-233 162-188 (510)
496 3lda_A DNA repair protein RAD5 85.4 0.41 1.4E-05 54.0 3.3 37 194-230 164-200 (400)
497 2ce2_X GTPase HRAS; signaling 85.4 0.43 1.5E-05 45.8 3.1 21 210-230 5-25 (166)
498 1tq4_A IIGP1, interferon-induc 85.2 0.43 1.5E-05 54.0 3.3 34 197-230 58-91 (413)
499 2ixe_A Antigen peptide transpo 85.2 0.35 1.2E-05 51.5 2.5 24 207-230 44-67 (271)
500 2zej_A Dardarin, leucine-rich 85.1 0.38 1.3E-05 47.8 2.6 21 210-230 4-24 (184)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-45 Score=363.77 Aligned_cols=168 Identities=48% Similarity=0.758 Sum_probs=144.7
Q ss_pred CCCcccEEEccccccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhhHHHH
Q 001277 10 FHGKYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWCLDEL 89 (1109)
Q Consensus 10 ~~~~~dvfis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c~~El 89 (1109)
.+++|||||||||+|+|+.|++||+++|+++||++|+|++++.+|+.|.++|.+||++|+++|||+|+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc-CCceEEeEEeeccccccccccChhhHHHHHHHHHhhccHHHHHHHHHHHHHHhhccCccCCCCchhhhHhh
Q 001277 90 VKIVECKK-RDHEIFPIFYDVEPTAVRKQTTSFGEAFAKHEEAFKDNIEKLQKWRDALKVVANKSGWELKDSNESEFIDE 168 (1109)
Q Consensus 90 ~~~~~~~~-~~~~v~pv~~~v~p~~vr~~~~~~~~a~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~~~~e~~~i~~ 168 (1109)
++|++|.+ .+++|+||||+|+|++||+|+|+||+||++|+++ ...+++++||+||+++|+++||++. ++|+++|++
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-~~e~~~i~~ 161 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-DDDSKLVDK 161 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-SCHHHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-CCHHHHHHH
Confidence 99999988 8899999999999999999999999999999987 5679999999999999999999994 679999999
Q ss_pred HHHHHhhhc-cCC
Q 001277 169 IVNVISNKI-RTK 180 (1109)
Q Consensus 169 iv~~i~~~l-~~~ 180 (1109)
||++|..++ +++
T Consensus 162 Iv~~v~~~l~~~~ 174 (176)
T 3jrn_A 162 IANEISNKKTIYA 174 (176)
T ss_dssp HHHHHHTTCC---
T ss_pred HHHHHHHHhcCCC
Confidence 999999999 444
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=6.1e-45 Score=363.09 Aligned_cols=167 Identities=43% Similarity=0.759 Sum_probs=157.3
Q ss_pred CCCCcccEEEccccccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhhHHH
Q 001277 9 AFHGKYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWCLDE 88 (1109)
Q Consensus 9 ~~~~~~dvfis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c~~E 88 (1109)
.+.++|||||||||+|+|+.|++||+.+|+++||++|+|++++++|+.|.++|.+||++|+++|||+|+||++|.||++|
T Consensus 31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E 110 (204)
T 3ozi_A 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110 (204)
T ss_dssp ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc--CCceEEeEEeeccccccccccChhhHHHHHHHHHhhccHHHHHHHHHHHHHHhhccCccCCC-Cchhhh
Q 001277 89 LVKIVECKK--RDHEIFPIFYDVEPTAVRKQTTSFGEAFAKHEEAFKDNIEKLQKWRDALKVVANKSGWELKD-SNESEF 165 (1109)
Q Consensus 89 l~~~~~~~~--~~~~v~pv~~~v~p~~vr~~~~~~~~a~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~~-~~e~~~ 165 (1109)
|++|++|.+ .+++|+||||+|+|++||+|+|+||+||++|++++. .+++++||+||+++|+++||++.+ ..|+++
T Consensus 111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~ 188 (204)
T 3ozi_A 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAI 188 (204)
T ss_dssp HHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHHHH
T ss_pred HHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHHHH
Confidence 999999986 578999999999999999999999999999998864 478999999999999999999987 567899
Q ss_pred HhhHHHHHhhhc
Q 001277 166 IDEIVNVISNKI 177 (1109)
Q Consensus 166 i~~iv~~i~~~l 177 (1109)
+++||.+|+.++
T Consensus 189 i~~Iv~di~~kl 200 (204)
T 3ozi_A 189 ADKVSADIWSHI 200 (204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-39 Score=393.49 Aligned_cols=302 Identities=16% Similarity=0.146 Sum_probs=236.2
Q ss_pred ccchhhHHHHHhhhccc-CCCeeEEEEEecCCchhHHHHHHHHH----HHhccccceEEeeechhhhcccCChHHHHHHH
Q 001277 188 VGIDSRLEKLRFLIATE-SSDVRMMGIWGMGGLGKTTLARVAYD----LISHEFDGSTFLANVREKSEKEGSVVSLQKQL 262 (1109)
Q Consensus 188 vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1109)
|||+.++++|.++|..+ ..++++|+|+|||||||||||+++|+ +++.+|++.+|+. ++.... .+ ...+++.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~-~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KS-TFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-TH-HHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CC-HHHHHHHH
Confidence 49999999999999754 34689999999999999999999997 7889999888884 443221 23 77888889
Q ss_pred HHHHhhccC-cccccc-----cccHHHHHHHHcCC-CCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhhHhh
Q 001277 263 LSDLLKLAD-ISIWNV-----DDGINIIGSRLRQK-KVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAH 335 (1109)
Q Consensus 263 l~~l~~~~~-~~~~~~-----~~~~~~l~~~L~~k-~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~ 335 (1109)
+.++..... ....+. +.....+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 888874321 111222 23478899999996 999999999999876 3332 2899999999999988765
Q ss_pred CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhcCCCCHHHHHHHHH-HhhcC
Q 001277 336 EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLK-RLKKE 414 (1109)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~-~l~~~ 414 (1109)
+.. ..+|+|++|+.+||++||.+++|.... .+...+++++|+++|+|+||||+++|+.|+.+.. +|...+. .+...
T Consensus 282 ~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 282 SQT-CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR 358 (549)
T ss_dssp CSC-EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH
T ss_pred CCC-CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcc
Confidence 422 237999999999999999999987543 3677889999999999999999999999987643 3333333 23332
Q ss_pred CCChhHHHHHhhhcCCcHHHHHHhh-----------hhhcccCCCCHHHHHHHHHhC--CCCccc-----------chHH
Q 001277 415 PPNRIINILQISFDGLQDLEKKIFL-----------DVACFFKSWDRDHVEKILEGC--GFSPVI-----------GIEV 470 (1109)
Q Consensus 415 ~~~~i~~~L~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--~~~~~~-----------~l~~ 470 (1109)
+...+..++.+||+.||++.|.||+ +||+||+++..+ ..+|.+. |+.... .++.
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 5667889999999999999999999 999999999877 6788887 655322 4899
Q ss_pred hhhccCeeEeCC---CeEehhHHHHHHhHhhhhccC
Q 001277 471 LIEKSLLTVDDG---NRLWMHDLLQELGHQIVQRQS 503 (1109)
Q Consensus 471 L~~~sLi~~~~~---~~~~mHdlv~~~~~~i~~~e~ 503 (1109)
|+++||++.... .+|.|||+||++|+.++..++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999997642 479999999999999887654
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.3e-34 Score=383.38 Aligned_cols=311 Identities=19% Similarity=0.269 Sum_probs=243.1
Q ss_pred cCCcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHH---HhccccceEEeeechhhhcccCC
Q 001277 178 RTKPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDL---ISHEFDGSTFLANVREKSEKEGS 254 (1109)
Q Consensus 178 ~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~ 254 (1109)
..+|.....||||+.++++|.++|.....++++|+|+||||+||||||+++|++ ...+|...+||..+..... ..
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~- 194 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK-SG- 194 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH-HH-
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc-hH-
Confidence 346667788999999999999999766678899999999999999999999975 4667888887766654221 11
Q ss_pred hHHHHHHHHHHHhhccC---cccccccccHHHHHHHHcCC--CCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 255 VVSLQKQLLSDLLKLAD---ISIWNVDDGINIIGSRLRQK--KVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 255 ~~~l~~~ll~~l~~~~~---~~~~~~~~~~~~l~~~L~~k--~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
.......++..+..... ....+.++....++..+.++ |+||||||||+.++++.+ ++|++||||||++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCH
Confidence 33444556666553221 11234455666677777666 999999999999876654 6899999999999
Q ss_pred hhhHhhCCCccceEEcCC-CCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhcCCCCHHHHHHHH
Q 001277 330 QLLVAHEVDEEHIYNLEV-LSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTL 408 (1109)
Q Consensus 330 ~v~~~~~~~~~~~~~l~~-L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l 408 (1109)
.++.... .....+++++ |+++||++||..+++.. .+...+.+++|+++|+|+||||+++|++|+.+. ..|..++
T Consensus 268 ~~~~~~~-~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l 342 (1249)
T 3sfz_A 268 SVTDSVM-GPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342 (1249)
T ss_dssp TTTTTCC-SCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHH
T ss_pred HHHHhhc-CCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHH
Confidence 8874422 2223899996 99999999999988543 233456789999999999999999999998765 4688888
Q ss_pred HHhhcCCC-----------ChhHHHHHhhhcCCcHHHHHHhhhhhcccCCC--CHHHHHHHHHhCCCCcccchHHhhhcc
Q 001277 409 KRLKKEPP-----------NRIINILQISFDGLQDLEKKIFLDVACFFKSW--DRDHVEKILEGCGFSPVIGIEVLIEKS 475 (1109)
Q Consensus 409 ~~l~~~~~-----------~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~s 475 (1109)
+.+..... ..+..+|.+||+.|++++|.||+++|+||+++ +.+.+..+|..++......++.|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKS 422 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 88765431 35889999999999999999999999999986 456788888776655667799999999
Q ss_pred CeeEeCCCe---EehhHHHHHHhHhhhhcc
Q 001277 476 LLTVDDGNR---LWMHDLLQELGHQIVQRQ 502 (1109)
Q Consensus 476 Li~~~~~~~---~~mHdlv~~~~~~i~~~e 502 (1109)
|++...++. |.||+++|+++++...++
T Consensus 423 l~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 423 LLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999876553 999999999999886554
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.2e-33 Score=340.90 Aligned_cols=304 Identities=20% Similarity=0.271 Sum_probs=227.5
Q ss_pred CCcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH---hccccceEEeeechhhhcccCCh
Q 001277 179 TKPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI---SHEFDGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 179 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~f~~~~~~~~~~~~~~~~~~~ 255 (1109)
..|.....||||+.++++|.++|.....+.++|+|+||||+||||||++++++. +.+|+..+||..+..... .. +
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~-~~-~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK-SG-L 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH-HH-H
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch-HH-H
Confidence 456677889999999999999997655678999999999999999999999743 778976555554443211 11 1
Q ss_pred HHHHHHHHHHHhhcc---CcccccccccHHHHHHHHcC--CCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCch
Q 001277 256 VSLQKQLLSDLLKLA---DISIWNVDDGINIIGSRLRQ--KKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQ 330 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~---~~~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 330 (1109)
......+...+.... .....+.+.....++..+.+ +++||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 222222333332111 11123445566777777766 7999999999998776543 67999999999998
Q ss_pred hhHhhCCCccceEEc---CCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhcCCCCHHHHHHH
Q 001277 331 LLVAHEVDEEHIYNL---EVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRST 407 (1109)
Q Consensus 331 v~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~ 407 (1109)
++.... .. .+++ ++|+.+||++||...++.. .....+.+++|+++|+|+||||+++|+.++... ..|...
T Consensus 269 ~~~~~~-~~--~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 269 VTDSVM-GP--KYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp GGTTCC-SC--EEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHhcC-CC--ceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 765543 22 4555 5899999999999998642 222346789999999999999999999997653 368888
Q ss_pred HHHhhcCC-----------CChhHHHHHhhhcCCcHHHHHHhhhhhcccCCCC--HHHHHHHHHhCCCCcccchHHhhhc
Q 001277 408 LKRLKKEP-----------PNRIINILQISFDGLQDLEKKIFLDVACFFKSWD--RDHVEKILEGCGFSPVIGIEVLIEK 474 (1109)
Q Consensus 408 l~~l~~~~-----------~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~~~~~~l~~L~~~ 474 (1109)
++.+.... ...+..++..||+.|+++.|.||+++|+||++.. .+.+..+|..........++.|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 88876542 2368899999999999999999999999998754 5667778865433445668999999
Q ss_pred cCeeEeCC---CeEehhHHHHHHhHhh
Q 001277 475 SLLTVDDG---NRLWMHDLLQELGHQI 498 (1109)
Q Consensus 475 sLi~~~~~---~~~~mHdlv~~~~~~i 498 (1109)
||++...+ .+|.||+++|+++++.
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 99987542 2699999999999876
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.5e-33 Score=338.62 Aligned_cols=281 Identities=19% Similarity=0.174 Sum_probs=213.3
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHH--HHhccccceEEeeechhhhcccCChHHHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYD--LISHEFDGSTFLANVREKSEKEGSVVSLQKQL 262 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1109)
+..|||+.++++|.++|... ++.++|+|+||||+||||||+++|+ +++.+|+..+||.+++.. .. ...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~---~d-~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC---NS-PETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS---SS-HHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC---CC-HHHHHHHH
Confidence 34599999999999999742 3479999999999999999999997 578899986666666443 22 44555555
Q ss_pred HHHHhhcc---C--c-----ccccccccHHHHHHHH---cCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 263 LSDLLKLA---D--I-----SIWNVDDGINIIGSRL---RQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 263 l~~l~~~~---~--~-----~~~~~~~~~~~l~~~L---~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
+..+.... . . .+.+.++....+++.| .+||+||||||||+.++|+.+ ++||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccCh
Confidence 54432110 0 0 0112334456666666 579999999999999998876 2799999999999
Q ss_pred hhhHhhCCCccceEEcC------CCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhcCCC--CH
Q 001277 330 QLLVAHEVDEEHIYNLE------VLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGR--SV 401 (1109)
Q Consensus 330 ~v~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~--~~ 401 (1109)
.++....... .|+|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+++ +.
T Consensus 276 ~Va~~l~g~~--vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHS--SCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCe--EEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 9875433222 45666 899999999999984 322 12333444 999999999999999875 67
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHH-HHHhhhhhcccCCCC--HHHHHHHHHhCCC-CcccchHHhhhccCe
Q 001277 402 DLWRSTLKRLKKEPPNRIINILQISFDGLQDLE-KKIFLDVACFFKSWD--RDHVEKILEGCGF-SPVIGIEVLIEKSLL 477 (1109)
Q Consensus 402 ~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~-k~~fl~~a~f~~~~~--~~~l~~~~~~~~~-~~~~~l~~L~~~sLi 477 (1109)
++|+.. ....+..+|+.||+.|++++ |.||+++|+||+++. .+.+..+|.+.+. .....++.|+++||+
T Consensus 345 eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLL 417 (1221)
T 1vt4_I 345 DNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417 (1221)
T ss_dssp HHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSS
T ss_pred HHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCE
Confidence 888753 35679999999999999999 999999999998775 4668888987752 245568999999999
Q ss_pred eEeC-CCeEehhHHHHHHh
Q 001277 478 TVDD-GNRLWMHDLLQELG 495 (1109)
Q Consensus 478 ~~~~-~~~~~mHdlv~~~~ 495 (1109)
+... ..+|+|||++++++
T Consensus 418 q~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 418 EKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SBCSSSSEEBCCCHHHHHH
T ss_pred EEeCCCCEEEehHHHHHHh
Confidence 9863 46899999998854
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.2e-28 Score=298.68 Aligned_cols=331 Identities=15% Similarity=0.179 Sum_probs=271.3
Q ss_pred cEEEEccCCCCCCCC------------------CCC-CC--CCCcceEEEecCCCCCCcccccccCCcCCcceeeccccC
Q 001277 527 TLVILNLKDCTSLTT------------------LPG-KI--SMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTT 585 (1109)
Q Consensus 527 ~~~~l~l~~~~~l~~------------------l~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 585 (1109)
....|+++.+. +.. +|. +. .+++|++|++++|. +....|..++.+++|++|++++|.
T Consensus 207 ~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 207 KLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCT
T ss_pred CCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEEECcCCC
Confidence 44677777765 444 665 44 69999999999998 444448889999999999999998
Q ss_pred -Cc--ccccccccc------CCCcEEeCCCCcCCccccc--cccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccC
Q 001277 586 -IE--ELPLSIQHL------TGLVLLNLKDCKNLKSLSH--TLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDG 654 (1109)
Q Consensus 586 -l~--~l~~~~~~l------~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 654 (1109)
++ .+|..++.+ ++|++|++++|... .+|. .++++++|++|+|++|...+.+| .++.+++|++|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 88 489888887 99999999998655 8998 89999999999999998777899 899999999999999
Q ss_pred ccCcccCCcccCCCC-CcEEeeeccCCCcccCCCCCCCC--CCcEEEecCCCCCcccCcccC-------CCCCccEEecC
Q 001277 655 TSIAEVPSSIELLTG-LQLLNLNNCSNLVRLPSCINGLR--SLKTLNLSGCSKLQNVPETLG-------QVESLEELDIS 724 (1109)
Q Consensus 655 ~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp~~i~~l~--~L~~L~Ls~c~~l~~lp~~l~-------~l~~L~~L~L~ 724 (1109)
|.+..+|..+..+++ |+.|++++|... .+|..+..++ +|++|++++|...+.+|..+. .+++|+.|+|+
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred CccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 999999999999999 999999998755 8998887655 899999999999888888888 78899999999
Q ss_pred CCcccCCCcccc-ccCCCcEEEccCCCCCCCCCCccccc--------ccccccccCCCccccCCCCC--CCCCCCEEecC
Q 001277 725 GTAIRRPPSSIF-VMNNLKTLSFSGCNGPPSSTSWHWHF--------PFNLMGQRSYPVALMLPSLS--GLHSLSKLDLS 793 (1109)
Q Consensus 725 ~~~i~~~p~~l~-~l~~L~~L~L~~c~~~~~~~~~~~~~--------~~~~l~~~~~~~~~l~~~l~--~l~~L~~L~Ls 793 (1109)
+|.++.+|..+. .+++|+.|+|++|............. .+..+.+..+.+..+|..+. .+++|+.|+|+
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECC
T ss_pred CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECC
Confidence 999999987765 58999999999998764333222211 56666666666667777776 78888888888
Q ss_pred CCCCCCCCcccccCCCCCCCEEeCC------CCCCc-ccchhhhccCCCCceeccCCcCcCcCCC-CCCCcceEeccCCc
Q 001277 794 DCGLGEGAIPNDIGNLCSLKQLNLS------QNNFV-TLPASINSLFNLGQLDLEDCKRLQSMPQ-LPSNLYEVQVNGCA 865 (1109)
Q Consensus 794 ~~~l~~~~lp~~l~~l~~L~~L~Ls------~n~l~-~lp~~~~~l~~L~~L~L~~c~~L~~lp~-lp~~L~~L~~~~C~ 865 (1109)
+|.+.. +|..++.+++|+.|+|+ +|++. .+|..+..+++|+.|+|++|.. +.+|. +.++|+.|++++|+
T Consensus 522 ~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 522 YNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp SSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCT
T ss_pred CCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCC
Confidence 888843 78888888888888884 44444 6778888888888888888876 77774 56788888888875
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.4e-28 Score=302.46 Aligned_cols=300 Identities=15% Similarity=0.193 Sum_probs=189.3
Q ss_pred ccccCCcCCcceeeccccCCcc------------------cccccc--ccCCCcEEeCCCCcCCccccccccccCcCcEE
Q 001277 567 LEFAGSMNDLSELFLDRTTIEE------------------LPLSIQ--HLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNL 626 (1109)
Q Consensus 567 ~~~~~~~~~L~~L~L~~~~l~~------------------l~~~~~--~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 626 (1109)
|..++.+++|++|+|++|.+.. +|..++ ++++|++|+|++|.....+|..+.++++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 5556667777777777777776 777766 77777777777777677777777777777777
Q ss_pred EecCCC-CCC-cccccccCCC-------CCcEEeccCccCcccCC--cccCCCCCcEEeeeccCCCcccCCCCCCCCCCc
Q 001277 627 TLSGCS-KLK-KFPESLGSMK-------DLMELFLDGTSIAEVPS--SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLK 695 (1109)
Q Consensus 627 ~L~~~~-~~~-~~p~~l~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 695 (1109)
+|++|. ... .+|..+++++ +|++|+|++|.+..+|. .++++++|+.|+|++|... .+| .+.++++|+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT 598 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence 777776 433 4666555444 77777777777777777 6777777777777776544 666 667777777
Q ss_pred EEEecCCCCCcccCcccCCCCC-ccEEecCCCcccCCCccccccCC--CcEEEccCCCCCCCCCCcc-------------
Q 001277 696 TLNLSGCSKLQNVPETLGQVES-LEELDISGTAIRRPPSSIFVMNN--LKTLSFSGCNGPPSSTSWH------------- 759 (1109)
Q Consensus 696 ~L~Ls~c~~l~~lp~~l~~l~~-L~~L~L~~~~i~~~p~~l~~l~~--L~~L~L~~c~~~~~~~~~~------------- 759 (1109)
+|+|++|... .+|..+..+++ |+.|+|++|.++.+|..+..++. |+.|+|++|......+.+.
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 7777777654 67777777777 77777777777776766655443 6666666665433222111
Q ss_pred -----------------cccccccccccCCCccccCCCCCC--------CCCCCEEecCCCCCCCCCcccccC--CCCCC
Q 001277 760 -----------------WHFPFNLMGQRSYPVALMLPSLSG--------LHSLSKLDLSDCGLGEGAIPNDIG--NLCSL 812 (1109)
Q Consensus 760 -----------------~~~~~~~l~~~~~~~~~l~~~l~~--------l~~L~~L~Ls~~~l~~~~lp~~l~--~l~~L 812 (1109)
....+..+.+..+.+..+|..+.. +++|+.|+|++|++. .+|..+. .+++|
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCc
Confidence 112233333333344444433222 226666666666664 3666665 66677
Q ss_pred CEEeCCCCCCcccchhhhccCCCCceeccC------CcCcCcCCCC---CCCcceEeccCCcccccccc
Q 001277 813 KQLNLSQNNFVTLPASINSLFNLGQLDLED------CKRLQSMPQL---PSNLYEVQVNGCASLVTLSG 872 (1109)
Q Consensus 813 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~------c~~L~~lp~l---p~~L~~L~~~~C~~L~~l~~ 872 (1109)
+.|+|++|.++.+|..+..+++|+.|+|++ |.....+|.. .++|+.|++++|.- ..+|.
T Consensus 756 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp CEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred CEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 777777776666666666667777776655 3334445521 24666666666643 55544
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=5.1e-27 Score=294.30 Aligned_cols=317 Identities=16% Similarity=0.203 Sum_probs=269.0
Q ss_pred CCCC-C--CCCcceEEEecCCCCCCcccccccCCcCCcceeeccccC-Ccc--ccccccccC-------CCcEEeCCCCc
Q 001277 542 LPGK-I--SMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTT-IEE--LPLSIQHLT-------GLVLLNLKDCK 608 (1109)
Q Consensus 542 l~~~-~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~-l~~--l~~~~~~l~-------~L~~L~L~~~~ 608 (1109)
+|.. . .+++|++|++++|.....+ |..++.+++|+.|++++|. ++. +|..++.++ +|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 6653 3 7999999999999844444 8889999999999999998 874 888777666 99999999986
Q ss_pred CCccccc--cccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCC-CcEEeeeccCCCcccC
Q 001277 609 NLKSLSH--TLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTG-LQLLNLNNCSNLVRLP 685 (1109)
Q Consensus 609 ~l~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp 685 (1109)
.. .+|. .++++++|++|+|++|... .+| .++++++|+.|+|++|.+..+|..+..+++ |+.|+|++|... .+|
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc
Confidence 55 8998 8999999999999998766 888 899999999999999999999999999999 999999998754 889
Q ss_pred CCCCCCCC--CcEEEecCCCCCcccCc---ccC--CCCCccEEecCCCcccCCCcccc-ccCCCcEEEccCCCCCCCCCC
Q 001277 686 SCINGLRS--LKTLNLSGCSKLQNVPE---TLG--QVESLEELDISGTAIRRPPSSIF-VMNNLKTLSFSGCNGPPSSTS 757 (1109)
Q Consensus 686 ~~i~~l~~--L~~L~Ls~c~~l~~lp~---~l~--~l~~L~~L~L~~~~i~~~p~~l~-~l~~L~~L~L~~c~~~~~~~~ 757 (1109)
..+..++. |+.|+|++|...+.+|. .++ .+++|+.|+|++|.+..+|..+. .+++|+.|+|++|........
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 88877654 99999999987765553 333 34589999999999999998775 789999999999987643332
Q ss_pred ccccc--------ccccccccCCCccccCCCCC--CCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCC------CC
Q 001277 758 WHWHF--------PFNLMGQRSYPVALMLPSLS--GLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQ------NN 821 (1109)
Q Consensus 758 ~~~~~--------~~~~l~~~~~~~~~l~~~l~--~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~------n~ 821 (1109)
..... .+..+.+..+.+..+|..+. .+++|+.|+|++|.+.. +|..++.+++|+.|+|++ |+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCccccc
Confidence 22222 57777777777888888887 99999999999999954 899999999999999987 55
Q ss_pred Cc-ccchhhhccCCCCceeccCCcCcCcCCC-CCCCcceEeccCCcc
Q 001277 822 FV-TLPASINSLFNLGQLDLEDCKRLQSMPQ-LPSNLYEVQVNGCAS 866 (1109)
Q Consensus 822 l~-~lp~~~~~l~~L~~L~L~~c~~L~~lp~-lp~~L~~L~~~~C~~ 866 (1109)
+. .+|..+..+++|+.|+|++|.. +.+|. ++++|+.|++++|+-
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred ccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 54 7899999999999999999987 88985 778999999999973
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=6.5e-28 Score=304.88 Aligned_cols=341 Identities=23% Similarity=0.218 Sum_probs=259.1
Q ss_pred EEEccCCCCCCCCCCC--CCCCCcceEEEecCCCCCCcccccccCCcC-CcceeeccccCCc-cccccccc--cCCCcEE
Q 001277 529 VILNLKDCTSLTTLPG--KISMKSLKTLVLSGCLKLTKKCLEFAGSMN-DLSELFLDRTTIE-ELPLSIQH--LTGLVLL 602 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~L~~L~L~~~~l~-~l~~~~~~--l~~L~~L 602 (1109)
..++++.+.-...+|. +..+++|++|++++|. +....|..+..+. +|++|++++|.+. .+|..+.. +++|++|
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 4455554432224442 4566677777777765 4433355455554 6777777776665 44555554 6778888
Q ss_pred eCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCc-ccCCcccCCCCCcEEeeeccCCC
Q 001277 603 NLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSSIELLTGLQLLNLNNCSNL 681 (1109)
Q Consensus 603 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l 681 (1109)
++++|.....+|..+.++++|++|+|++|...+.+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|...
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 88888766678888888999999999998887888889999999999999999888 67888889999999999998888
Q ss_pred cccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCccc-CCCccccccCCCcEEEccCCCCCCCCCCccc
Q 001277 682 VRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIR-RPPSSIFVMNNLKTLSFSGCNGPPSSTSWHW 760 (1109)
Q Consensus 682 ~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~ 760 (1109)
+.+|..+.++++|++|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..+..+++|+.|++++|......+....
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 888888889999999999999988889999999999999999999988 4688899999999999998875433322110
Q ss_pred c-ccc---cc-------------------------------------------cccc-CCCccccCCCCCCCCCCCEEec
Q 001277 761 H-FPF---NL-------------------------------------------MGQR-SYPVALMLPSLSGLHSLSKLDL 792 (1109)
Q Consensus 761 ~-~~~---~~-------------------------------------------l~~~-~~~~~~l~~~l~~l~~L~~L~L 792 (1109)
. ... .. .... ....+..|..+..+++|+.|+|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 0 000 00 0000 0111234667888999999999
Q ss_pred CCCCCCCCCcccccCCCCCCCEEeCCCCCCc-ccchhhhccCCCCceeccCCcCcCcCCCCC---CCcceEeccCCcccc
Q 001277 793 SDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLEDCKRLQSMPQLP---SNLYEVQVNGCASLV 868 (1109)
Q Consensus 793 s~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~~~~C~~L~ 868 (1109)
++|++ .+.+|..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+....+|... ++|+.|++++|.--.
T Consensus 640 s~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 640 SYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CSSCC-BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cCCcc-cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999 6789999999999999999999999 799999999999999999999888888533 578999999986444
Q ss_pred ccc
Q 001277 869 TLS 871 (1109)
Q Consensus 869 ~l~ 871 (1109)
.+|
T Consensus 719 ~iP 721 (768)
T 3rgz_A 719 PIP 721 (768)
T ss_dssp ECC
T ss_pred cCC
Confidence 444
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=6.2e-27 Score=289.02 Aligned_cols=324 Identities=16% Similarity=0.185 Sum_probs=272.6
Q ss_pred CCCC-CCCCCcceEEEecCCCCCCc------------------ccccccC--CcCCcceeeccccCCc-cccccccccCC
Q 001277 541 TLPG-KISMKSLKTLVLSGCLKLTK------------------KCLEFAG--SMNDLSELFLDRTTIE-ELPLSIQHLTG 598 (1109)
Q Consensus 541 ~l~~-~~~l~~L~~L~l~~~~~l~~------------------~~~~~~~--~~~~L~~L~L~~~~l~-~l~~~~~~l~~ 598 (1109)
.+|. +..+++|++|++++|. ++. + |..++ .+++|++|+++++.+. .+|..++++++
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred cCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC-chhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 3453 6678999999999998 887 5 88788 9999999999988865 78999999999
Q ss_pred CcEEeCCCCcCCc--ccccccccc------CcCcEEEecCCCCCCcccc--cccCCCCCcEEeccCccCc-ccCCcccCC
Q 001277 599 LVLLNLKDCKNLK--SLSHTLRRL------QCLKNLTLSGCSKLKKFPE--SLGSMKDLMELFLDGTSIA-EVPSSIELL 667 (1109)
Q Consensus 599 L~~L~L~~~~~l~--~lp~~l~~l------~~L~~L~L~~~~~~~~~p~--~l~~l~~L~~L~L~~~~i~-~lp~~i~~l 667 (1109)
|++|++++|..+. .+|..++++ ++|++|+|++|... .+|. .++++++|++|++++|.+. .+| .++.+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 9999999997444 689888876 99999999998766 8999 9999999999999999999 999 89999
Q ss_pred CCCcEEeeeccCCCcccCCCCCCCCC-CcEEEecCCCCCcccCcccCCCC--CccEEecCCCcccCC-Ccccc-------
Q 001277 668 TGLQLLNLNNCSNLVRLPSCINGLRS-LKTLNLSGCSKLQNVPETLGQVE--SLEELDISGTAIRRP-PSSIF------- 736 (1109)
Q Consensus 668 ~~L~~L~L~~c~~l~~lp~~i~~l~~-L~~L~Ls~c~~l~~lp~~l~~l~--~L~~L~L~~~~i~~~-p~~l~------- 736 (1109)
++|+.|++++|... .+|..+.++++ |++|++++|... .+|..++.+. +|+.|++++|.+.+. |..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 99999999998655 89999999999 999999999865 8998887765 899999999999875 66777
Q ss_pred ccCCCcEEEccCCCCCCCCCCcc-cccccccccccCCCccccCCCCCC--------CCCCCEEecCCCCCCCCCcccccC
Q 001277 737 VMNNLKTLSFSGCNGPPSSTSWH-WHFPFNLMGQRSYPVALMLPSLSG--------LHSLSKLDLSDCGLGEGAIPNDIG 807 (1109)
Q Consensus 737 ~l~~L~~L~L~~c~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~l~~--------l~~L~~L~Ls~~~l~~~~lp~~l~ 807 (1109)
.+++|+.|++++|.......... ....+..+.+..+.+..+|..... +++|+.|+|++|.+. .+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGS
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhh
Confidence 78899999999998774433222 245567777777666666664432 339999999999996 5898887
Q ss_pred --CCCCCCEEeCCCCCCcccchhhhccCCCCceeccC------CcCcCcCCCC---CCCcceEeccCCccccccccc
Q 001277 808 --NLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLED------CKRLQSMPQL---PSNLYEVQVNGCASLVTLSGA 873 (1109)
Q Consensus 808 --~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~------c~~L~~lp~l---p~~L~~L~~~~C~~L~~l~~~ 873 (1109)
.+++|+.|+|++|+++.+|..+..+++|+.|+|++ |...+.+|.. .++|+.|++++|.- ..+|..
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 99999999999999999999999999999999954 5556677732 36899999999874 766654
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=4.2e-27 Score=297.41 Aligned_cols=341 Identities=23% Similarity=0.218 Sum_probs=212.9
Q ss_pred EEEEccCCCCCCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCC
Q 001277 528 LVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDC 607 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~ 607 (1109)
...|+++.+.-...+|.+..+++|++|++++|. ++...|..++.+++|++|+++++.+....... .+++|++|++++|
T Consensus 202 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n 279 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAEN 279 (768)
T ss_dssp CCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSS
T ss_pred CCEEECcCCcCCCCCcccccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCC
Confidence 345666655444445556666777777777766 55444555666666777777766665222222 5666666666666
Q ss_pred cCCcccccccccc-CcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCc-ccCCc-ccCCCCCcEEeeeccCCCccc
Q 001277 608 KNLKSLSHTLRRL-QCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSS-IELLTGLQLLNLNNCSNLVRL 684 (1109)
Q Consensus 608 ~~l~~lp~~l~~l-~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~L~~c~~l~~l 684 (1109)
.....+|..+..+ ++|++|+|++|.....+|..++++++|++|++++|.+. .+|.. ++.+++|+.|++++|.....+
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence 5544556555543 66666666666665566666666666666666666665 55544 666666666666666555566
Q ss_pred CCCCCCCC-CCcEEEecCCCCCcccCcccCC--CCCccEEecCCCccc-CCCccccccCCCcEEEccCCCCCCCCC-Ccc
Q 001277 685 PSCINGLR-SLKTLNLSGCSKLQNVPETLGQ--VESLEELDISGTAIR-RPPSSIFVMNNLKTLSFSGCNGPPSST-SWH 759 (1109)
Q Consensus 685 p~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~--l~~L~~L~L~~~~i~-~~p~~l~~l~~L~~L~L~~c~~~~~~~-~~~ 759 (1109)
|..+.+++ +|++|++++|...+.+|..+.. +++|++|++++|.++ .+|..+..+++|+.|++++|......+ .+.
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 66555555 6666666666655555555554 566666666666666 346666666666666666665432222 122
Q ss_pred cccccccccccCCCcc-ccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc-ccchhhhccCCCCc
Q 001277 760 WHFPFNLMGQRSYPVA-LMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQ 837 (1109)
Q Consensus 760 ~~~~~~~l~~~~~~~~-~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~~~l~~L~~ 837 (1109)
....+..+.+..+.+. .+|..+..+++|++|+|++|.+ .+.+|..++.+++|++|+|++|+++ .+|.++..+++|+.
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc-cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 3334444444444333 4456677777788888888777 4567777777888888888888777 67777777888888
Q ss_pred eeccCCcCcCcCCCC---CCCcceEeccCCccccccc
Q 001277 838 LDLEDCKRLQSMPQL---PSNLYEVQVNGCASLVTLS 871 (1109)
Q Consensus 838 L~L~~c~~L~~lp~l---p~~L~~L~~~~C~~L~~l~ 871 (1109)
|+|++|+....+|.. .++|+.|++.+|.-...+|
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 888887776666632 2567777777776444444
No 13
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.94 E-value=7.9e-29 Score=244.80 Aligned_cols=119 Identities=25% Similarity=0.398 Sum_probs=112.0
Q ss_pred CCCcccEEEccccccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhhHHHH
Q 001277 10 FHGKYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWCLDEL 89 (1109)
Q Consensus 10 ~~~~~dvfis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c~~El 89 (1109)
+.++|||||||+++| ++.|+++|+.+|+++|++||+|++++.+|+.|.++|.+||++|+++|+|+|++|+.|.||++|+
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 469999999999999 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc-CCceEEeEEeeccccccccccChhhHHHHHHH
Q 001277 90 VKIVECKK-RDHEIFPIFYDVEPTAVRKQTTSFGEAFAKHE 129 (1109)
Q Consensus 90 ~~~~~~~~-~~~~v~pv~~~v~p~~vr~~~~~~~~a~~~~~ 129 (1109)
..|+++.. .+++|+||||+|+|++||+|.|.|+++|+...
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 99999877 77899999999999999999999998876553
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.1e-25 Score=277.86 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=48.8
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCcccc-ccccccCCCcEEeCCCCcCCc-cccccccccCc
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELP-LSIQHLTGLVLLNLKDCKNLK-SLSHTLRRLQC 622 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~ 622 (1109)
+..+++|++|++++|. ++...|..++.+++|++|+++++.+..++ ..++++++|++|++++|.... .+|..++++++
T Consensus 76 ~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp TTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred hhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 3455556666665555 44444555555555666666655555544 345555666666665554332 34555555666
Q ss_pred CcEEEecCCCCC
Q 001277 623 LKNLTLSGCSKL 634 (1109)
Q Consensus 623 L~~L~L~~~~~~ 634 (1109)
|++|+|++|...
T Consensus 155 L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 155 LVHVDLSYNYIQ 166 (606)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEEccCCcce
Confidence 666666655433
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.1e-25 Score=277.83 Aligned_cols=338 Identities=20% Similarity=0.191 Sum_probs=195.7
Q ss_pred cEEEEccCCCCCCCCC-C-CCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCc--cccccccccCCCcEE
Q 001277 527 TLVILNLKDCTSLTTL-P-GKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE--ELPLSIQHLTGLVLL 602 (1109)
Q Consensus 527 ~~~~l~l~~~~~l~~l-~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L 602 (1109)
....|+++++. +..+ | .+..+++|++|++++|. ++...+..++.+.+|++|++++|.+. .+|..++++++|++|
T Consensus 81 ~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 81 HLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp TCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred hcCEeECCCCc-ccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 34566666553 3333 3 25677888888888887 66664566777888888888888877 467778888888888
Q ss_pred eCCCCcCCccccccccccC---------------------------cCcEEEecCCCCC---------------------
Q 001277 603 NLKDCKNLKSLSHTLRRLQ---------------------------CLKNLTLSGCSKL--------------------- 634 (1109)
Q Consensus 603 ~L~~~~~l~~lp~~l~~l~---------------------------~L~~L~L~~~~~~--------------------- 634 (1109)
++++|......|..+..+. +|++|++++|...
T Consensus 159 ~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp ECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred EccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 8887754333333232222 3444444444221
Q ss_pred -------------------------------------CcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeec
Q 001277 635 -------------------------------------KKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNN 677 (1109)
Q Consensus 635 -------------------------------------~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 677 (1109)
..+|. +..+++|+.|+++++.+..+| .+..+++|+.|++++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIR 316 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEES
T ss_pred cccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEccc
Confidence 00111 334455555555555555555 556666777777777
Q ss_pred cCCCcccCCCCCCCCCCcEEEecCCCCCccc------------------------CcccCCCCCccEEecCCCcccCCCc
Q 001277 678 CSNLVRLPSCINGLRSLKTLNLSGCSKLQNV------------------------PETLGQVESLEELDISGTAIRRPPS 733 (1109)
Q Consensus 678 c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l------------------------p~~l~~l~~L~~L~L~~~~i~~~p~ 733 (1109)
|.. +.+|. + .+++|++|++++|.....+ |..+..+++|++|++++|.+..+|.
T Consensus 317 n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 393 (606)
T 3vq2_A 317 CQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA 393 (606)
T ss_dssp CCC-SSCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC
T ss_pred ccC-ccccc-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh
Confidence 665 66663 3 5666666666665433322 3444455555555555555555555
Q ss_pred cccccCCCcEEEccCCCCCCCCC--CcccccccccccccCCCccc-cCCCCCCCCCCCEEecCCCCCCCCCcccccCCCC
Q 001277 734 SIFVMNNLKTLSFSGCNGPPSST--SWHWHFPFNLMGQRSYPVAL-MLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLC 810 (1109)
Q Consensus 734 ~l~~l~~L~~L~L~~c~~~~~~~--~~~~~~~~~~l~~~~~~~~~-l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 810 (1109)
.+..+++|+.|++++|......+ .+.....+..+....+.... .+..+.++++|++|+|++|.+....+|..++.++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 55556666666666655333222 22233444444444444333 3445666677777777777663323566667777
Q ss_pred CCCEEeCCCCCCccc-chhhhccCCCCceeccCCcCcCcCCCC---CCCcceEeccCCcccccccc
Q 001277 811 SLKQLNLSQNNFVTL-PASINSLFNLGQLDLEDCKRLQSMPQL---PSNLYEVQVNGCASLVTLSG 872 (1109)
Q Consensus 811 ~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~~~~C~~L~~l~~ 872 (1109)
+|+.|+|++|.++.+ |..+..+++|+.|+|++|+.....|.. .++|+.|++++|. +++++.
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence 777777777777654 345667777777777777554443421 2467777777664 555544
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.4e-25 Score=269.29 Aligned_cols=164 Identities=18% Similarity=0.161 Sum_probs=88.8
Q ss_pred cccCCCcEEEccCCCCCCCC-CCcccccccccccccCCCcc---ccCCCCCCCCCCCEEecCCCCCCCCCccc-ccCCCC
Q 001277 736 FVMNNLKTLSFSGCNGPPSS-TSWHWHFPFNLMGQRSYPVA---LMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLC 810 (1109)
Q Consensus 736 ~~l~~L~~L~L~~c~~~~~~-~~~~~~~~~~~l~~~~~~~~---~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~ 810 (1109)
..+++|++|++++|...... ..+.....+..+....+.+. .+|..+..+++|++|+|++|.+. +.+|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS-YDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB-CCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC-cccccchhccCc
Confidence 34556666666666544422 12223334444444444443 23445677777777777777773 33444 366677
Q ss_pred CCCEEeCCCCCCc-ccchhhhccCCCCceeccCCcCcCcCCC---CCCCcceEeccCCcccccccccccccccccccccc
Q 001277 811 SLKQLNLSQNNFV-TLPASINSLFNLGQLDLEDCKRLQSMPQ---LPSNLYEVQVNGCASLVTLSGALKLCKSKCTSINC 886 (1109)
Q Consensus 811 ~L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~~~~C~~L~~l~~~~~~~~~~~~~~~c 886 (1109)
+|+.|+|++|.++ .+|..+. ++|+.|+|++|. ++.+|. -.++|+.|++++| .++.++.... ..+..
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~------~~l~~ 469 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDGIF------DRLTS 469 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTT------TTCTT
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHHHh------ccCCc
Confidence 7777777777775 3443332 577777777774 345653 1256777777776 3555543310 01111
Q ss_pred cccccccCc---chhHHHHH-HHHHhhc
Q 001277 887 IGSLKLAGN---NGLAISML-REYLKAV 910 (1109)
Q Consensus 887 ~~~l~~~~~---~~~~~~~~-~~~~~~~ 910 (1109)
...|++++| +...+.++ ..|+...
T Consensus 470 L~~L~l~~N~~~c~c~~~~~~~~~~~~~ 497 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCPRIDYLSRWLNKN 497 (520)
T ss_dssp CCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred ccEEECcCCCCcccCCchHHHHHHHHhc
Confidence 224455554 23345555 6777643
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.1e-25 Score=271.90 Aligned_cols=296 Identities=18% Similarity=0.182 Sum_probs=183.2
Q ss_pred EEEEccCCCCCCCCCC--CCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCcccccc-ccccCCCcEEeC
Q 001277 528 LVILNLKDCTSLTTLP--GKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLS-IQHLTGLVLLNL 604 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L 604 (1109)
...++++++. +..++ .+..+++|++|++++|. ++...+..+..+++|++|++++|.+..++.. ++.+++|++|++
T Consensus 28 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 28 MKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp CCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred ccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4566666653 33332 35667778888887776 6666556677777788888887777766654 777778888888
Q ss_pred CCCcCCc-cccccccccCcCcEEEecCCCCCCccc-ccccCCCCCcEEeccCccCcc-cCCcccCCCCCcEEeeeccCCC
Q 001277 605 KDCKNLK-SLSHTLRRLQCLKNLTLSGCSKLKKFP-ESLGSMKDLMELFLDGTSIAE-VPSSIELLTGLQLLNLNNCSNL 681 (1109)
Q Consensus 605 ~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l 681 (1109)
++|.... ..|..+.++++|++|++++|.....+| ..+.++++|++|++++|.+.. +|..++.+++|+.|++++|..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~- 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES- 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-
Confidence 7775433 345557777778888887776555555 467777788888887777774 566777777788888777653
Q ss_pred cccCCC-CCCCCCCcEEEecCCCCCccc--Ccc-----------------------------cCC---------------
Q 001277 682 VRLPSC-INGLRSLKTLNLSGCSKLQNV--PET-----------------------------LGQ--------------- 714 (1109)
Q Consensus 682 ~~lp~~-i~~l~~L~~L~Ls~c~~l~~l--p~~-----------------------------l~~--------------- 714 (1109)
..+|.. +..+++|++|++++|...+.. |.. +..
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 233332 234777888888877643310 000 000
Q ss_pred --------------------------------------------CCCccEEecCCCcccCCCccc-cccCCCcEEEccCC
Q 001277 715 --------------------------------------------VESLEELDISGTAIRRPPSSI-FVMNNLKTLSFSGC 749 (1109)
Q Consensus 715 --------------------------------------------l~~L~~L~L~~~~i~~~p~~l-~~l~~L~~L~L~~c 749 (1109)
+.+|+.|++++|.+..+|..+ ..+++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 124555555555555555554 35677777777777
Q ss_pred CCCCCC----CCcccccccccccccCCCccccC---CCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCC
Q 001277 750 NGPPSS----TSWHWHFPFNLMGQRSYPVALML---PSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNF 822 (1109)
Q Consensus 750 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~l~---~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l 822 (1109)
...... ........+..+....+.+..++ ..+..+++|++|+|++|++. .+|..++.+++|++|+|++|.+
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC--CCCSCCCCCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc--cCChhhcccccccEEECCCCCc
Confidence 644311 01122334444555554444433 23566777777777777774 3676677777777777777777
Q ss_pred cccchh
Q 001277 823 VTLPAS 828 (1109)
Q Consensus 823 ~~lp~~ 828 (1109)
+.+|..
T Consensus 423 ~~l~~~ 428 (549)
T 2z81_A 423 RVVKTC 428 (549)
T ss_dssp SCCCTT
T ss_pred ccccch
Confidence 666543
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.2e-25 Score=267.19 Aligned_cols=323 Identities=20% Similarity=0.188 Sum_probs=191.4
Q ss_pred CCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCc-cc-cccccccCCCcEEeCCCCcCCccccc
Q 001277 538 SLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE-EL-PLSIQHLTGLVLLNLKDCKNLKSLSH 615 (1109)
Q Consensus 538 ~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~-~l-~~~~~~l~~L~~L~L~~~~~l~~lp~ 615 (1109)
.++.+|. -.++|++|++++|. ++...+..+..+++|++|+++++.+. .+ +..+..+++|++|++++|......|.
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CcccCCC--CCCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh
Confidence 3445554 22557777777665 55554555666666777777766654 33 34566667777777776655444566
Q ss_pred cccccCcCcEEEecCCCCCCccccc--ccCCCCCcEEeccCccCccc-CCc-ccCCCCCcEEeeeccCCCcccCCCCCC-
Q 001277 616 TLRRLQCLKNLTLSGCSKLKKFPES--LGSMKDLMELFLDGTSIAEV-PSS-IELLTGLQLLNLNNCSNLVRLPSCING- 690 (1109)
Q Consensus 616 ~l~~l~~L~~L~L~~~~~~~~~p~~--l~~l~~L~~L~L~~~~i~~l-p~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~- 690 (1109)
.+.++++|++|+|++|.....+|.. ++.+++|++|+|++|.+..+ |.. +..+++|++|++++|......|..+..
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 6666777777777766555444443 66667777777777766655 333 566677777777666554444444433
Q ss_pred ---------------------------------CCCCcEEEecCCCCCcccCcccCCC---CCccEEecCCCcccCC---
Q 001277 691 ---------------------------------LRSLKTLNLSGCSKLQNVPETLGQV---ESLEELDISGTAIRRP--- 731 (1109)
Q Consensus 691 ---------------------------------l~~L~~L~Ls~c~~l~~lp~~l~~l---~~L~~L~L~~~~i~~~--- 731 (1109)
+++|++|++++|...+..|..+..+ ++|+.|++++|.....
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 3455566665555443333222111 2222222222211110
Q ss_pred --------Ccccc--ccCCCcEEEccCCCCCCCCCC-cccccccccccccCCCcccc-CCCCCCCCCCCEEecCCCCCCC
Q 001277 732 --------PSSIF--VMNNLKTLSFSGCNGPPSSTS-WHWHFPFNLMGQRSYPVALM-LPSLSGLHSLSKLDLSDCGLGE 799 (1109)
Q Consensus 732 --------p~~l~--~l~~L~~L~L~~c~~~~~~~~-~~~~~~~~~l~~~~~~~~~l-~~~l~~l~~L~~L~Ls~~~l~~ 799 (1109)
+..+. ..++|+.|++++|......+. +.....+..+.+..+.+..+ +..+.++++|++|+|++|.+ .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~ 336 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-G 336 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-C
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-C
Confidence 00000 113455555555543332211 12233344444444444443 45688899999999999998 4
Q ss_pred CCcccccCCCCCCCEEeCCCCCCccc-chhhhccCCCCceeccCCcCcCcCCC-C---CCCcceEeccCCc
Q 001277 800 GAIPNDIGNLCSLKQLNLSQNNFVTL-PASINSLFNLGQLDLEDCKRLQSMPQ-L---PSNLYEVQVNGCA 865 (1109)
Q Consensus 800 ~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~c~~L~~lp~-l---p~~L~~L~~~~C~ 865 (1109)
+..|..++.+++|++|+|++|.++.+ |..+..+++|++|+|++|.. +.+|. . .++|+.|++.+++
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc-ccCCHhHhccCCcccEEEccCCC
Confidence 44577889999999999999999977 67889999999999999854 45553 2 2578888888775
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=7.9e-25 Score=250.15 Aligned_cols=296 Identities=21% Similarity=0.264 Sum_probs=242.8
Q ss_pred EEEccCCCCCCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCc
Q 001277 529 VILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCK 608 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~ 608 (1109)
..++++++ .+..++.+..+++|++|++++|. ++.+ +. +..+++|++|+++++.++.++ .+..+++|++|++++|.
T Consensus 47 ~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~-~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 47 TKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDI-SP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN 121 (347)
T ss_dssp SEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCC-GG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred cEEEEeCC-ccccchhhhhcCCccEEEccCCc-cccc-hh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence 45666654 45667778889999999999997 8877 44 778899999999999999886 58899999999999975
Q ss_pred CCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCC
Q 001277 609 NLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCI 688 (1109)
Q Consensus 609 ~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i 688 (1109)
+..++. +..+++|++|++++|.....++. +..+++|++|++++|.+..++. +..+++|+.|++++|.. ..++. +
T Consensus 122 -i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~ 195 (347)
T 4fmz_A 122 -ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP-L 195 (347)
T ss_dssp -CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG-G
T ss_pred -ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc-c
Confidence 556666 88899999999999977776655 8999999999999999998876 88999999999999764 44544 7
Q ss_pred CCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccccccccc
Q 001277 689 NGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMG 768 (1109)
Q Consensus 689 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~ 768 (1109)
..+++|+.|++++|......+ +..+++|++|++++|.++.++. +..+++|+.|++++|....
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--------------- 257 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD--------------- 257 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC---------------
T ss_pred cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC---------------
Confidence 789999999999987554333 7889999999999999999876 8899999999999986432
Q ss_pred ccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCccc-chhhhccCCCCceeccCCcCcC
Q 001277 769 QRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTL-PASINSLFNLGQLDLEDCKRLQ 847 (1109)
Q Consensus 769 ~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~c~~L~ 847 (1109)
.+.+..+++|++|++++|.+.. ++ .+..+++|+.|+|++|.++.. |..+..+++|+.|+|++|+...
T Consensus 258 ---------~~~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 258 ---------INAVKDLTKLKMLNVGSNQISD--IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp ---------CGGGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred ---------ChhHhcCCCcCEEEccCCccCC--Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 1246778899999999999854 43 588899999999999999854 4678999999999999998544
Q ss_pred cCC-CCCCCcceEeccCCc
Q 001277 848 SMP-QLPSNLYEVQVNGCA 865 (1109)
Q Consensus 848 ~lp-~lp~~L~~L~~~~C~ 865 (1109)
..| .-.++|+.|++.+|+
T Consensus 326 ~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CGGGGGCTTCSEESSSCC-
T ss_pred ccChhhhhccceeehhhhc
Confidence 333 223688888888875
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5e-25 Score=263.38 Aligned_cols=276 Identities=22% Similarity=0.224 Sum_probs=142.6
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCcccccc-ccccCCCcEEeCCCCcCCccccccccccCcC
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLS-IQHLTGLVLLNLKDCKNLKSLSHTLRRLQCL 623 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 623 (1109)
+..+++|++|++++|. ++.+.|..+..+++|++|+|++|.++.+|.. +..+++|++|++++|......|..+.++++|
T Consensus 52 ~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 52 FASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 3445555555555554 4444444455555555555555555555442 3455555555555554444444445555555
Q ss_pred cEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCC
Q 001277 624 KNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGC 702 (1109)
Q Consensus 624 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 702 (1109)
++|+|++|......|..+..+++|++|+|++|.+..+|. .+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 555555554444444455555555555555555555443 2455555555555555444333344555555555555555
Q ss_pred CCCcccCcccCCCCCccEEecCCCcccCCC-ccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCC
Q 001277 703 SKLQNVPETLGQVESLEELDISGTAIRRPP-SSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSL 781 (1109)
Q Consensus 703 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p-~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l 781 (1109)
...+.+|.......+|+.|+|++|.++.+| ..+..+++|+.|+|++|..... .+..+
T Consensus 211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------~~~~~ 268 (477)
T 2id5_A 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI----------------------EGSML 268 (477)
T ss_dssp TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE----------------------CTTSC
T ss_pred ccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc----------------------Chhhc
Confidence 555555554444445555555555555554 2345555555555555542211 01234
Q ss_pred CCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchh-hhccCCCCceeccCCc
Q 001277 782 SGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPAS-INSLFNLGQLDLEDCK 844 (1109)
Q Consensus 782 ~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~L~~c~ 844 (1109)
.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+
T Consensus 269 ~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cccccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 45555555555555552 23344555555555555555555555532 3455555555555554
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.8e-24 Score=262.27 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=50.6
Q ss_pred CcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccc-cccccccCCCcEEeCCCCcCCccccccccccCcCcEEE
Q 001277 549 KSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEEL-PLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLT 627 (1109)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 627 (1109)
++|++|++++|. ++.+.+..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEE
Confidence 445555555554 4444333444455555555555555544 3334455555555555543 3344443 455555555
Q ss_pred ecCCCCCC-cccccccCCCCCcEEeccCccCc
Q 001277 628 LSGCSKLK-KFPESLGSMKDLMELFLDGTSIA 658 (1109)
Q Consensus 628 L~~~~~~~-~~p~~l~~l~~L~~L~L~~~~i~ 658 (1109)
|++|.... .+|..++++++|++|++++|.+.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 55544332 22344555555555555555444
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=2.4e-24 Score=265.78 Aligned_cols=294 Identities=21% Similarity=0.213 Sum_probs=221.9
Q ss_pred cceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEec
Q 001277 550 SLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLS 629 (1109)
Q Consensus 550 ~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 629 (1109)
+|+.|++++|. ++.+.+..+..+++|++|+++++.++.+|..+..+++|++|++++|......|..+.++++|++|+++
T Consensus 255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 68888888886 77775666777888888888888888888888888888888888876655556678888888888888
Q ss_pred CCCCCCcccc-cccCCCCCcEEeccCccCccc---CCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCC
Q 001277 630 GCSKLKKFPE-SLGSMKDLMELFLDGTSIAEV---PSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKL 705 (1109)
Q Consensus 630 ~~~~~~~~p~-~l~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l 705 (1109)
+|.....+|. .+..+++|++|++++|.+..+ +..+..+++|+.|++++|......|..+.++++|++|++++|...
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 8876655554 478888888888888888765 566788888888888888766666777888888888888888765
Q ss_pred cccCc-ccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCC
Q 001277 706 QNVPE-TLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSG 783 (1109)
Q Consensus 706 ~~lp~-~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~ 783 (1109)
...+. .+..+++|+.|++++|.+... |..+..+++|+.|++++|...... ...+..+..
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------------~~~~~~~~~ 474 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN-------------------IQKTNSLQT 474 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE-------------------ECSSCGGGG
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc-------------------cccchhhcc
Confidence 55443 377888888888888888776 566778888888888887642210 001234677
Q ss_pred CCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcc-cchhhhccCCCCceeccCCcCcCcCCCC---CCCcceE
Q 001277 784 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVT-LPASINSLFNLGQLDLEDCKRLQSMPQL---PSNLYEV 859 (1109)
Q Consensus 784 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L 859 (1109)
+++|+.|+|++|.+ .+..|..++.+++|+.|+|++|+++. .|..+..+++| .|+|++|......|.. .++|+.|
T Consensus 475 l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 475 LGRLEILVLSFCDL-SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp CTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred CCCccEEECCCCcc-CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 88899999998888 34557778888899999999988885 45678888888 8888888665444432 1467777
Q ss_pred eccCCc
Q 001277 860 QVNGCA 865 (1109)
Q Consensus 860 ~~~~C~ 865 (1109)
++.+|+
T Consensus 553 ~l~~N~ 558 (606)
T 3t6q_A 553 NLRQNP 558 (606)
T ss_dssp ECTTCC
T ss_pred eCCCCC
Confidence 777665
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3e-24 Score=245.38 Aligned_cols=287 Identities=20% Similarity=0.251 Sum_probs=235.8
Q ss_pred CCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCc
Q 001277 543 PGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQC 622 (1109)
Q Consensus 543 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 622 (1109)
.....+++|+.|+++++. +..+ +. +..+++|++|+++++.++.++. +..+++|++|++++| .+..+|. +.++++
T Consensus 38 ~~~~~l~~L~~L~l~~~~-i~~~-~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~ 111 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEK-VASI-QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA-LQNLTN 111 (347)
T ss_dssp ECHHHHTTCSEEECCSSC-CCCC-TT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTT
T ss_pred ccchhcccccEEEEeCCc-cccc-hh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchH-HcCCCc
Confidence 334567889999999987 7776 44 6778999999999999999887 899999999999998 4566764 889999
Q ss_pred CcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCC
Q 001277 623 LKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGC 702 (1109)
Q Consensus 623 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 702 (1109)
|++|++++|... .++. +..+++|++|++++|.....+..+..+++|+.|++++|.... ++. +..+++|++|++++|
T Consensus 112 L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 112 LRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYN 187 (347)
T ss_dssp CSEEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTS
T ss_pred CCEEECcCCccc-Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCC
Confidence 999999998644 4444 889999999999999666555568999999999999986543 333 778999999999998
Q ss_pred CCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCC
Q 001277 703 SKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLS 782 (1109)
Q Consensus 703 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~ 782 (1109)
... .++. +..+++|+.|++++|.+...+. +..+++|+.|++++|..... ++ +.
T Consensus 188 ~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-----------------------~~-~~ 240 (347)
T 4fmz_A 188 QIE-DISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL-----------------------SP-LA 240 (347)
T ss_dssp CCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-----------------------GG-GT
T ss_pred ccc-cccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC-----------------------cc-hh
Confidence 744 4444 7889999999999999998866 88899999999999864331 22 77
Q ss_pred CCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCC---CCCCcceE
Q 001277 783 GLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ---LPSNLYEV 859 (1109)
Q Consensus 783 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L 859 (1109)
.+++|++|++++|.+.. + ..+..+++|+.|++++|.++.+| .+..+++|+.|++++|+.....|. -.++|+.|
T Consensus 241 ~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 88999999999999854 4 46889999999999999999986 588999999999999976544442 23689999
Q ss_pred eccCCccccccc
Q 001277 860 QVNGCASLVTLS 871 (1109)
Q Consensus 860 ~~~~C~~L~~l~ 871 (1109)
++++|+ ++.++
T Consensus 317 ~L~~n~-l~~~~ 327 (347)
T 4fmz_A 317 FLSQNH-ITDIR 327 (347)
T ss_dssp ECCSSS-CCCCG
T ss_pred EccCCc-ccccc
Confidence 999997 55543
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=8.7e-25 Score=267.70 Aligned_cols=334 Identities=25% Similarity=0.281 Sum_probs=199.8
Q ss_pred EEEEccCCCCCCCCCCC--CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeC
Q 001277 528 LVILNLKDCTSLTTLPG--KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNL 604 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L 604 (1109)
...+++++|. +..++. +..+++|++|++++|. ++...+..+..+++|++|+++++.++.++. .++.+++|++|++
T Consensus 54 L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 54 LQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp CCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred ceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 3455665552 333322 4556667777777665 555544556666666666666666666554 4666666666666
Q ss_pred CCCcCCc-cccccccccCcCcEEEecCCCCCCcccccccC----------------------------------------
Q 001277 605 KDCKNLK-SLSHTLRRLQCLKNLTLSGCSKLKKFPESLGS---------------------------------------- 643 (1109)
Q Consensus 605 ~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~---------------------------------------- 643 (1109)
++|.... .+|..++++++|++|++++|......|..++.
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc
Confidence 6664333 35666666666666666665433332333332
Q ss_pred ---------------------------------------------------------------------CCCCcEEeccC
Q 001277 644 ---------------------------------------------------------------------MKDLMELFLDG 654 (1109)
Q Consensus 644 ---------------------------------------------------------------------l~~L~~L~L~~ 654 (1109)
+++|++|++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 33444444444
Q ss_pred ccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCC---
Q 001277 655 TSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP--- 731 (1109)
Q Consensus 655 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~--- 731 (1109)
+.+..+|..+..+ +|+.|++++|... .+|. ..+++|++|++++|.....++. ..+++|++|++++|.+...
T Consensus 292 ~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 292 VTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp CEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred ccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence 4444444444444 4444444444322 3332 2344455555555443333332 5677788888888877765
Q ss_pred CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccC--CCCCCCCCCCEEecCCCCCCCCCcccccCCC
Q 001277 732 PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALML--PSLSGLHSLSKLDLSDCGLGEGAIPNDIGNL 809 (1109)
Q Consensus 732 p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~--~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 809 (1109)
|..+..+++|+.|++++|........+.....+..+....+.+...+ ..+..+++|++|+|++|.+ .+..|..++.+
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l 444 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGL 444 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC-EECCTTTTTTC
T ss_pred cccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc-cccchhhhhcC
Confidence 45677778888888888764433222333444555555554444433 3577788888888888887 44567778888
Q ss_pred CCCCEEeCCCCCCc--ccchhhhccCCCCceeccCCcCcCcCCCC---CCCcceEeccCCccccccc
Q 001277 810 CSLKQLNLSQNNFV--TLPASINSLFNLGQLDLEDCKRLQSMPQL---PSNLYEVQVNGCASLVTLS 871 (1109)
Q Consensus 810 ~~L~~L~Ls~n~l~--~lp~~~~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~~~~C~~L~~l~ 871 (1109)
++|+.|+|++|.++ .+|..+..+++|+.|+|++|......|.. .++|+.|++.+|. ++.++
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 510 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVP 510 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCC
Confidence 88888888888876 57878888888888888888655444522 2578888888873 55443
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-24 Score=251.40 Aligned_cols=301 Identities=17% Similarity=0.126 Sum_probs=146.4
Q ss_pred CCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCccccccccccCcCcEE
Q 001277 548 MKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNL 626 (1109)
Q Consensus 548 l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 626 (1109)
+++++.|+++++. ++.+++.++..+++|++|+++++.++.++. .+..+++|++|++++|......|..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4455555555554 555433334445555666665555555443 45555556666665554333334445555556666
Q ss_pred EecCCCCCCcccc-cccCCCCCcEEeccCccCcccC-CcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCC
Q 001277 627 TLSGCSKLKKFPE-SLGSMKDLMELFLDGTSIAEVP-SSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSK 704 (1109)
Q Consensus 627 ~L~~~~~~~~~p~-~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~ 704 (1109)
+|++|... .+|. .++++++|++|++++|.+..++ ..+..+++|+.|++++|.... ++ +..+++|++|++++|..
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccc
Confidence 66555333 3333 2355555666666555555543 235555556666655543322 21 33445555555555432
Q ss_pred CcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccc-cCCCCCC
Q 001277 705 LQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVAL-MLPSLSG 783 (1109)
Q Consensus 705 l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~-l~~~l~~ 783 (1109)
.. +...++|++|++++|.+..+|... +++|+.|++++|..... ..+.....+..+.+..+.+.. .+..+..
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 11 122234555555555554443322 24455555555443221 001111111111111111111 1344556
Q ss_pred CCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCC-CCCCCcceEecc
Q 001277 784 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMP-QLPSNLYEVQVN 862 (1109)
Q Consensus 784 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp-~lp~~L~~L~~~ 862 (1109)
+++|++|+|++|.+.. +|..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+. ..+| ...++|+.|++.
T Consensus 271 l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLTLS 347 (390)
T ss_dssp CSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC-CCCCCCTTCCCSEEECC
T ss_pred cccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc-ceeCchhhccCCEEEcC
Confidence 6666666666666633 55555566666666666666666666666666666666666642 2332 222344455544
Q ss_pred CC
Q 001277 863 GC 864 (1109)
Q Consensus 863 ~C 864 (1109)
++
T Consensus 348 ~N 349 (390)
T 3o6n_A 348 HN 349 (390)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=4.4e-24 Score=263.41 Aligned_cols=333 Identities=19% Similarity=0.122 Sum_probs=168.6
Q ss_pred EEEccCCCCCCCCCC--CCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccc-cccccccCCCcEEeCC
Q 001277 529 VILNLKDCTSLTTLP--GKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEEL-PLSIQHLTGLVLLNLK 605 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~ 605 (1109)
..++++++ .++.++ .+..+++|++|++++|. +..+.|..+..+++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 36 ~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 36 ECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp CEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cEEEccCC-ccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 45555543 222222 24556666666666665 5555455556666666666666666544 4456666666666666
Q ss_pred CCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCccc-CCcccCCCCCc--EEeeeccCCCc
Q 001277 606 DCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEV-PSSIELLTGLQ--LLNLNNCSNLV 682 (1109)
Q Consensus 606 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~--~L~L~~c~~l~ 682 (1109)
+|......|..+.++++|++|+|++|.....-+..+..+++|++|++++|.+..+ |..++.+++|+ .|++++|....
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 6543332244455666666666666554442222222366666666666666554 23455555555 55555544333
Q ss_pred ccCCCCCCCC----------------------------------------------------CCcEEEecCCCCCcccCc
Q 001277 683 RLPSCINGLR----------------------------------------------------SLKTLNLSGCSKLQNVPE 710 (1109)
Q Consensus 683 ~lp~~i~~l~----------------------------------------------------~L~~L~Ls~c~~l~~lp~ 710 (1109)
..|..+ ... +|++|++++|......+.
T Consensus 194 ~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 194 IEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp ECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred cChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 222221 111 344444444443333334
Q ss_pred ccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCC-CcccccccccccccCCCcc-ccCC-CCCCCCCC
Q 001277 711 TLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSST-SWHWHFPFNLMGQRSYPVA-LMLP-SLSGLHSL 787 (1109)
Q Consensus 711 ~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~-~~~~~~~~~~l~~~~~~~~-~l~~-~l~~l~~L 787 (1109)
.++.+++|++|++++|.++.+|..+..+++|++|++++|......+ .+.....+..+....+... .++. .+..+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 4555566666666666666665555566666666666555433211 1222233333333333222 2222 25556666
Q ss_pred CEEecCCCCCCCCCc--ccccCCCCCCCEEeCCCCCCccc-chhhhccCCCCceeccCCcCcCcCCC----CCCCcceEe
Q 001277 788 SKLDLSDCGLGEGAI--PNDIGNLCSLKQLNLSQNNFVTL-PASINSLFNLGQLDLEDCKRLQSMPQ----LPSNLYEVQ 860 (1109)
Q Consensus 788 ~~L~Ls~~~l~~~~l--p~~l~~l~~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~c~~L~~lp~----lp~~L~~L~ 860 (1109)
++|++++|.+.. .. |..++.+++|++|+|++|.+..+ |..+..+++|+.|++++|......|. -.++|+.|+
T Consensus 353 ~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCcccc-ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 666666666532 11 44555666666666666665543 34455566666666666554433321 124555666
Q ss_pred ccCCc
Q 001277 861 VNGCA 865 (1109)
Q Consensus 861 ~~~C~ 865 (1109)
+.+|.
T Consensus 432 l~~n~ 436 (606)
T 3t6q_A 432 LSHSL 436 (606)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 65553
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=5.3e-24 Score=253.39 Aligned_cols=314 Identities=20% Similarity=0.318 Sum_probs=235.8
Q ss_pred EEEccCCCCCCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCc
Q 001277 529 VILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCK 608 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~ 608 (1109)
..+++.++ .+..+|.+..+++|++|++++|. ++.. +. +..+++|++|+++++.+..++. +..+++|++|++++|.
T Consensus 49 ~~L~l~~~-~i~~l~~~~~l~~L~~L~Ls~n~-l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 49 TTLQADRL-GIKSIDGVEYLNNLTQINFSNNQ-LTDI-TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp CEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred cEEecCCC-CCccCcchhhhcCCCEEECCCCc-cCCc-hh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 34555554 45667778888999999999987 7777 44 7788899999999999988877 8899999999999874
Q ss_pred CCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCC
Q 001277 609 NLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCI 688 (1109)
Q Consensus 609 ~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i 688 (1109)
+..++. +.++++|++|++++|... .++ .++.+++|++|+++ +.+..++. +..+++|+.|++++|.. ..++ .+
T Consensus 124 -l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~l 195 (466)
T 1o6v_A 124 -ITDIDP-LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKV-SDIS-VL 195 (466)
T ss_dssp -CCCCGG-GTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GG
T ss_pred -CCCChH-HcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcC-CCCh-hh
Confidence 556665 888999999999988543 344 47788888888886 44555443 77888888888888753 3343 36
Q ss_pred CCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccccccccc
Q 001277 689 NGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMG 768 (1109)
Q Consensus 689 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~ 768 (1109)
..+++|++|++++|...+..| ++.+++|+.|++++|.++.++ .+..+++|+.|++++|......+ +.....+..+.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 271 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELK 271 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEE
Confidence 678888888888877554433 667788888888888887764 56778888888888887554433 34445566666
Q ss_pred ccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCc
Q 001277 769 QRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQS 848 (1109)
Q Consensus 769 ~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~ 848 (1109)
...+.+..+++ +..+++|+.|+|++|.+.. ++. ++.+++|+.|+|++|+++.++. +..+++|+.|++++|+ +..
T Consensus 272 l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~ 345 (466)
T 1o6v_A 272 LGANQISNISP-LAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSD 345 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCC
T ss_pred CCCCccCcccc-ccCCCccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCC
Confidence 66666655555 7888999999999999843 433 7889999999999999988775 7889999999999884 455
Q ss_pred CCCCC--CCcceEeccCCc
Q 001277 849 MPQLP--SNLYEVQVNGCA 865 (1109)
Q Consensus 849 lp~lp--~~L~~L~~~~C~ 865 (1109)
++.+. ++|+.|++.+|.
T Consensus 346 ~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 346 VSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CGGGTTCTTCCEEECCSSC
T ss_pred chhhccCCCCCEEeCCCCc
Confidence 55433 688899998885
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=258.08 Aligned_cols=301 Identities=19% Similarity=0.209 Sum_probs=229.5
Q ss_pred CCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccc-cccccccCCCcEEeCCCCcCCcccc-c
Q 001277 538 SLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEEL-PLSIQHLTGLVLLNLKDCKNLKSLS-H 615 (1109)
Q Consensus 538 ~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~lp-~ 615 (1109)
.+..+|... .++|+.|++++|. ++.+.+..+..+++|++|+|+++.+..+ |..+.++++|++|+|++|. +..+| .
T Consensus 22 ~l~~ip~~~-~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 98 (477)
T 2id5_A 22 RFVAVPEGI-PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLG 98 (477)
T ss_dssp CCSSCCSCC-CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTT
T ss_pred CcCcCCCCC-CCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcc
Confidence 455566422 3578899999887 7777667788888899999998888876 6678888999999998875 44555 3
Q ss_pred cccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccC-CcccCCCCCcEEeeeccCCCcccCCCCCCCCCC
Q 001277 616 TLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVP-SSIELLTGLQLLNLNNCSNLVRLPSCINGLRSL 694 (1109)
Q Consensus 616 ~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L 694 (1109)
.+.++++|++|+|++|......|..+.++++|++|+|++|.+..++ ..+..+++|+.|+|++|......+..+.++++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 4678889999999988777777888888999999999998888664 568888899999998876544333457788899
Q ss_pred cEEEecCCCCCcccCcccCCCCCccEEecCCCccc-CCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCC
Q 001277 695 KTLNLSGCSKLQNVPETLGQVESLEELDISGTAIR-RPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYP 773 (1109)
Q Consensus 695 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~ 773 (1109)
+.|++++|......+..+..+++|+.|++++|... .+|..+....+|+.|++++|......
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------------ 240 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP------------------ 240 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC------------------
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC------------------
Confidence 99999988876666667888888999999887644 34666666678999999887643210
Q ss_pred ccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCccc-chhhhccCCCCceeccCCcCcCcCCC-
Q 001277 774 VALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTL-PASINSLFNLGQLDLEDCKRLQSMPQ- 851 (1109)
Q Consensus 774 ~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~c~~L~~lp~- 851 (1109)
+..+..+++|+.|+|++|.+. +..+..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|. ++.+|.
T Consensus 241 ----~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 314 (477)
T 2id5_A 241 ----YLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEES 314 (477)
T ss_dssp ----HHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGG
T ss_pred ----HHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHh
Confidence 124678889999999999984 34456688999999999999999976 5678899999999999884 445542
Q ss_pred ---CCCCcceEeccCCc
Q 001277 852 ---LPSNLYEVQVNGCA 865 (1109)
Q Consensus 852 ---lp~~L~~L~~~~C~ 865 (1109)
-.++|+.|++.+++
T Consensus 315 ~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 315 VFHSVGNLETLILDSNP 331 (477)
T ss_dssp GBSCGGGCCEEECCSSC
T ss_pred HcCCCcccCEEEccCCC
Confidence 12466666666554
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-24 Score=264.24 Aligned_cols=286 Identities=15% Similarity=0.126 Sum_probs=142.2
Q ss_pred CCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCccccccccccCcCcEE
Q 001277 548 MKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNL 626 (1109)
Q Consensus 548 l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 626 (1109)
+.+++.|+++++. +..+++.++..+++|++|+++++.+..++. .++.+++|++|+|++|......|..++++++|++|
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3444455554443 444433333444445555555444444432 44445555555555443332233334445555555
Q ss_pred EecCCCCCCcccccccCCCCCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCC------------
Q 001277 627 TLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRS------------ 693 (1109)
Q Consensus 627 ~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~------------ 693 (1109)
+|++|......+..++++++|++|+|++|.+..++. .++.+++|+.|+|++|... .++ +..+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccCccc
Confidence 555443332222223445555555555554444332 3444455555555444322 121 223444
Q ss_pred -------CcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccccccc
Q 001277 694 -------LKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNL 766 (1109)
Q Consensus 694 -------L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~ 766 (1109)
|++|++++|... .++..+ .++|+.|+|++|.+++. ..+..+++|+.|+|++|....
T Consensus 206 ~l~~~~~L~~L~ls~n~l~-~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~------------- 268 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK------------- 268 (597)
T ss_dssp EEECCTTCSEEECCSSCCC-EEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE-------------
T ss_pred cccCCchhheeeccCCccc-cccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCC-------------
Confidence 444444444322 122111 13455555555555442 344455555555555543221
Q ss_pred ccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCc
Q 001277 767 MGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRL 846 (1109)
Q Consensus 767 l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L 846 (1109)
..|..+..+++|+.|+|++|.+.. +|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|...
T Consensus 269 ---------~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 269 ---------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp ---------EESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred ---------CCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCC
Confidence 124456677777777777777743 666666777777777777777777777777777777777777543
Q ss_pred CcCCCCCCCcceEeccCCc
Q 001277 847 QSMPQLPSNLYEVQVNGCA 865 (1109)
Q Consensus 847 ~~lp~lp~~L~~L~~~~C~ 865 (1109)
..-+...++|+.|++++|+
T Consensus 338 ~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 338 TLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCCTTCCCSEEECCSSC
T ss_pred CcChhhcCCCCEEEeeCCC
Confidence 2212233455555555543
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.6e-24 Score=262.23 Aligned_cols=333 Identities=20% Similarity=0.205 Sum_probs=249.7
Q ss_pred EEEEccCCCCCCCCCC--CCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCcccc-ccccccCCCcEEeC
Q 001277 528 LVILNLKDCTSLTTLP--GKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELP-LSIQHLTGLVLLNL 604 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L 604 (1109)
...++++++. +..++ .+..+++|++|++++|. ++.+.+..+..+++|++|+++++.+..++ ..+..+++|++|++
T Consensus 30 l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEEccCCc-cCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 3467777653 44443 46789999999999997 88876777888999999999999999876 57899999999999
Q ss_pred CCCcCCccccc-cccccCcCcEEEecCCCCCC-cccccccCCCCCcEEeccCccCcccC-CcccCCCCC----cEEeeec
Q 001277 605 KDCKNLKSLSH-TLRRLQCLKNLTLSGCSKLK-KFPESLGSMKDLMELFLDGTSIAEVP-SSIELLTGL----QLLNLNN 677 (1109)
Q Consensus 605 ~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L----~~L~L~~ 677 (1109)
++|. +..++. .++++++|++|++++|.... .+|..++++++|++|++++|.+..++ ..++.+++| +.|++++
T Consensus 108 ~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 9985 455543 58899999999999987665 57999999999999999999988664 345555555 4444444
Q ss_pred cCCC----------------------------------------------------------------------------
Q 001277 678 CSNL---------------------------------------------------------------------------- 681 (1109)
Q Consensus 678 c~~l---------------------------------------------------------------------------- 681 (1109)
|...
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 3211
Q ss_pred -----cccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccc--------------------c
Q 001277 682 -----VRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSI--------------------F 736 (1109)
Q Consensus 682 -----~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l--------------------~ 736 (1109)
...|..+..+++|++|++++|.. ..+|..+..+ +|++|++++|.+..+|... .
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccc
Confidence 11234455577888888888764 3577777777 7888888877777665421 4
Q ss_pred ccCCCcEEEccCCCCCCCC---CCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCC
Q 001277 737 VMNNLKTLSFSGCNGPPSS---TSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLK 813 (1109)
Q Consensus 737 ~l~~L~~L~L~~c~~~~~~---~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 813 (1109)
.+++|+.|++++|...... ........+..+....+....+++.+..+++|++|++++|.+.....+..+..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 5678888888887654321 1122344566677777777777777899999999999999985432235788999999
Q ss_pred EEeCCCCCCcc-cchhhhccCCCCceeccCCcCc-CcCCC---CCCCcceEeccCCc
Q 001277 814 QLNLSQNNFVT-LPASINSLFNLGQLDLEDCKRL-QSMPQ---LPSNLYEVQVNGCA 865 (1109)
Q Consensus 814 ~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~c~~L-~~lp~---lp~~L~~L~~~~C~ 865 (1109)
+|+|++|.+.. .|..+..+++|+.|+|++|... ..+|. -.++|+.|++++|.
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 99999999985 5667899999999999999865 35663 23689999999885
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3e-24 Score=259.67 Aligned_cols=325 Identities=18% Similarity=0.153 Sum_probs=217.9
Q ss_pred EEEEccCCCCCCCCCC--CCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCC
Q 001277 528 LVILNLKDCTSLTTLP--GKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLK 605 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~ 605 (1109)
...++++++. +..++ .+..+++|++|++++|. ++...|..++.+++|++|++++|.++.+|.. .+++|++|+++
T Consensus 23 L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 23 TTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp CSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 3456666553 33333 25567778888888776 6666566677777788888887777777766 67778888887
Q ss_pred CCcCCc-cccccccccCcCcEEEecCCCCCCcccccccCCCCC--cEEeccCccC--c-ccCCcccCC------------
Q 001277 606 DCKNLK-SLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDL--MELFLDGTSI--A-EVPSSIELL------------ 667 (1109)
Q Consensus 606 ~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L--~~L~L~~~~i--~-~lp~~i~~l------------ 667 (1109)
+|.... .+|..++++++|++|++++|.... ..+..+++| ++|++++|.+ . ..|..+..+
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 776544 356667777777777777765433 233444444 6666655554 1 222222221
Q ss_pred -----------------------------------------------------------------------CCCcEEeee
Q 001277 668 -----------------------------------------------------------------------TGLQLLNLN 676 (1109)
Q Consensus 668 -----------------------------------------------------------------------~~L~~L~L~ 676 (1109)
++|+.|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 145555555
Q ss_pred ccCCCcccCCCC-----CCCCCCcEEEecCCCCCcccCc-------------------------c-cCCCCCccEEecCC
Q 001277 677 NCSNLVRLPSCI-----NGLRSLKTLNLSGCSKLQNVPE-------------------------T-LGQVESLEELDISG 725 (1109)
Q Consensus 677 ~c~~l~~lp~~i-----~~l~~L~~L~Ls~c~~l~~lp~-------------------------~-l~~l~~L~~L~L~~ 725 (1109)
+|...+.+|..+ .++++|+.|++++|.. .+|. . ...+++|++|++++
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred cccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 554444566655 5565555555555543 2331 0 15677888888888
Q ss_pred CcccC-CCccccccCCCcEEEccCCCCCCCC---CCcccccccccccccCCCccc-cCCC-CCCCCCCCEEecCCCCCCC
Q 001277 726 TAIRR-PPSSIFVMNNLKTLSFSGCNGPPSS---TSWHWHFPFNLMGQRSYPVAL-MLPS-LSGLHSLSKLDLSDCGLGE 799 (1109)
Q Consensus 726 ~~i~~-~p~~l~~l~~L~~L~L~~c~~~~~~---~~~~~~~~~~~l~~~~~~~~~-l~~~-l~~l~~L~~L~Ls~~~l~~ 799 (1109)
|.+++ .|..+..+++|+.|++++|...... ..+.....+..+....+.+.. +|.. +..+++|++|+|++|.+.
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~- 412 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT- 412 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC-
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC-
Confidence 88887 4777888888888888888765311 112334456666666666665 5554 788999999999999994
Q ss_pred CCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCC--C--CCCcceEeccCCc
Q 001277 800 GAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ--L--PSNLYEVQVNGCA 865 (1109)
Q Consensus 800 ~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~~~~C~ 865 (1109)
+.+|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++|+ ++.+|. + .++|+.|++.+++
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 45665554 79999999999999999999999999999999985 557775 2 2578888888775
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=3e-24 Score=255.08 Aligned_cols=345 Identities=20% Similarity=0.171 Sum_probs=252.5
Q ss_pred eEEEecCCCCCCcccccccCCcCCcceeeccccCCccc-cccccccCCCcEEeCCCCcCCccc-cccccccCcCcEEEec
Q 001277 552 KTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEEL-PLSIQHLTGLVLLNLKDCKNLKSL-SHTLRRLQCLKNLTLS 629 (1109)
Q Consensus 552 ~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~ 629 (1109)
+.++.+++. ++.+ |. .+++|++|+++++.++.+ |..+.++++|++|++++|.....+ +..+.++++|++|+|+
T Consensus 13 ~~~~c~~~~-l~~l-p~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRG-LHQV-PE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSC-CSSC-CC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCC-cccC-CC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 356666654 7777 55 347899999999999977 668999999999999999776555 5668999999999999
Q ss_pred CCCCCCcccccccCCCCCcEEeccCccCcc-cCCc--ccCCCCCcEEeeeccCCCcccCCC-CCCCCCCcEEEecCCCCC
Q 001277 630 GCSKLKKFPESLGSMKDLMELFLDGTSIAE-VPSS--IELLTGLQLLNLNNCSNLVRLPSC-INGLRSLKTLNLSGCSKL 705 (1109)
Q Consensus 630 ~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l 705 (1109)
+|......|..++++++|++|+|++|.+.. +|.. ++.+++|++|+|++|......|.. +.++++|++|++++|...
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 998877789999999999999999999985 3443 889999999999998877666765 789999999999999877
Q ss_pred cccCcccCCC--CCccEEecCCCcccCCCcc---------ccccCCCcEEEccCCCCCC---------------------
Q 001277 706 QNVPETLGQV--ESLEELDISGTAIRRPPSS---------IFVMNNLKTLSFSGCNGPP--------------------- 753 (1109)
Q Consensus 706 ~~lp~~l~~l--~~L~~L~L~~~~i~~~p~~---------l~~l~~L~~L~L~~c~~~~--------------------- 753 (1109)
+..+..+..+ .+|+.|++++|.+..++.. +..+++|+.|++++|....
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777776655 5677777777777665422 2344566667766664321
Q ss_pred ------CCCC-----------cc--cccccccccccCCCccc-cCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCC
Q 001277 754 ------SSTS-----------WH--WHFPFNLMGQRSYPVAL-MLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLK 813 (1109)
Q Consensus 754 ------~~~~-----------~~--~~~~~~~l~~~~~~~~~-l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 813 (1109)
.... +. ....+..+....+.+.. .+..+..+++|++|+|++|.+. +..|..++.+++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL 326 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCC
Confidence 0000 00 00233444444444433 3567899999999999999994 45577899999999
Q ss_pred EEeCCCCCCccc-chhhhccCCCCceeccCCcCcCcCCC---CCCCcceEeccCCccccccccccccccccccccccccc
Q 001277 814 QLNLSQNNFVTL-PASINSLFNLGQLDLEDCKRLQSMPQ---LPSNLYEVQVNGCASLVTLSGALKLCKSKCTSINCIGS 889 (1109)
Q Consensus 814 ~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~~~~C~~L~~l~~~~~~~~~~~~~~~c~~~ 889 (1109)
+|+|++|.++.+ |..+..+++|+.|+|++|......|. -.++|+.|++.+|. ++.++..... . +.....
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~---~---l~~L~~ 399 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFD---R---LTSLQK 399 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTT---T---CTTCCE
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhc---c---CCcccE
Confidence 999999999977 56789999999999999976544453 22689999999874 6655532211 1 111225
Q ss_pred ccccCcc---hh-HHHHHHHHHhh
Q 001277 890 LKLAGNN---GL-AISMLREYLKA 909 (1109)
Q Consensus 890 l~~~~~~---~~-~~~~~~~~~~~ 909 (1109)
|++++|. .. .+.++..|+..
T Consensus 400 L~l~~N~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 400 IWLHTNPWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp EECCSSCBCCCTTTTHHHHHHHHH
T ss_pred EEccCCCcccCCCcchHHHHHHHh
Confidence 5566551 11 25566677654
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.4e-23 Score=256.22 Aligned_cols=326 Identities=17% Similarity=0.148 Sum_probs=217.6
Q ss_pred cEEEEccCCCCCCCCCC--CCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeC
Q 001277 527 TLVILNLKDCTSLTTLP--GKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNL 604 (1109)
Q Consensus 527 ~~~~l~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L 604 (1109)
....++++++. +..++ .+..+++|++|++++|. ++.+.|..+..+++|++|++++|.++.+|.. .+++|++|++
T Consensus 53 ~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 53 RTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CcCEEECCCCC-ccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 34577777653 44454 46788999999999997 8888777788899999999999999999887 8999999999
Q ss_pred CCCcCCc-cccccccccCcCcEEEecCCCCCCcccccccCCCCC--cEEeccCccC--c-ccCCcccCC-----------
Q 001277 605 KDCKNLK-SLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDL--MELFLDGTSI--A-EVPSSIELL----------- 667 (1109)
Q Consensus 605 ~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L--~~L~L~~~~i--~-~lp~~i~~l----------- 667 (1109)
++|.... .+|..++++++|++|+|++|..... .+..+++| ++|++++|.+ . ..|..+..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9986444 3457799999999999999865542 33444444 8888888776 2 222222221
Q ss_pred ---------------C-------------------------------------------------------CCcEEeeec
Q 001277 668 ---------------T-------------------------------------------------------GLQLLNLNN 677 (1109)
Q Consensus 668 ---------------~-------------------------------------------------------~L~~L~L~~ 677 (1109)
+ +|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 1 555566665
Q ss_pred cCCCcccCCCC-----CCCCC--------------------------CcEEEecCCCCCcccCcccCCCCCccEEecCCC
Q 001277 678 CSNLVRLPSCI-----NGLRS--------------------------LKTLNLSGCSKLQNVPETLGQVESLEELDISGT 726 (1109)
Q Consensus 678 c~~l~~lp~~i-----~~l~~--------------------------L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 726 (1109)
|...+.+|..+ .+++. |++|++++|...... ..+.+++|++|++++|
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCC
Confidence 55444555544 22222 333333333211100 0145566666666666
Q ss_pred cccC-CCccccccCCCcEEEccCCCCCCCC---CCcccccccccccccCCCccc-cCC-CCCCCCCCCEEecCCCCCCCC
Q 001277 727 AIRR-PPSSIFVMNNLKTLSFSGCNGPPSS---TSWHWHFPFNLMGQRSYPVAL-MLP-SLSGLHSLSKLDLSDCGLGEG 800 (1109)
Q Consensus 727 ~i~~-~p~~l~~l~~L~~L~L~~c~~~~~~---~~~~~~~~~~~l~~~~~~~~~-l~~-~l~~l~~L~~L~Ls~~~l~~~ 800 (1109)
.+++ .|..+..+++|+.|++++|...... ..+.....+..+....+.+.. +|. .+..+++|+.|+|++|.+. +
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 442 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-G 442 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-G
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC-c
Confidence 6665 3556666666666666666544321 112233344445555544444 444 3778899999999999994 4
Q ss_pred CcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCC----CCCcceEeccCCc
Q 001277 801 AIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQL----PSNLYEVQVNGCA 865 (1109)
Q Consensus 801 ~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~~~~C~ 865 (1109)
.+|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++|. ++.+|.- .++|+.|++.+++
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred chhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 5665544 79999999999999999998899999999999986 4467742 2466777776654
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.7e-25 Score=249.64 Aligned_cols=250 Identities=19% Similarity=0.265 Sum_probs=182.8
Q ss_pred CcceeeccccCCc---cccccccccCCCcEEeCCC-CcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEE
Q 001277 575 DLSELFLDRTTIE---ELPLSIQHLTGLVLLNLKD-CKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMEL 650 (1109)
Q Consensus 575 ~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 650 (1109)
+++.|+++++.+. .+|..+..+++|++|++++ |.....+|..+.++++|++|+|++|.....+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 3555555555554 3566666777777777764 44444667667777777777777776666777777777777777
Q ss_pred eccCccCc-ccCCcccCCCCCcEEeeeccCCCcccCCCCCCCC-CCcEEEecCCCCCcccCcccCCCCCccEEecCCCcc
Q 001277 651 FLDGTSIA-EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLR-SLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAI 728 (1109)
Q Consensus 651 ~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i 728 (1109)
+|++|.+. .+|..+..+++|++|++++|.....+|..+.+++ +|++|++++|...+.+|..++.++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 77777777 5677777777888888877766667777777776 788888888776667777777776 88888888887
Q ss_pred cCC-CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccC
Q 001277 729 RRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIG 807 (1109)
Q Consensus 729 ~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~ 807 (1109)
++. |..+..+++|+.|++++|..... ++.+..+++|++|+|++|.+ .+.+|..++
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~ 265 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFD-----------------------LGKVGLSKNLNGLDLRNNRI-YGTLPQGLT 265 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCB-----------------------GGGCCCCTTCCEEECCSSCC-EECCCGGGG
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeee-----------------------cCcccccCCCCEEECcCCcc-cCcCChHHh
Confidence 754 56677788888888887753221 22356678899999999988 456888888
Q ss_pred CCCCCCEEeCCCCCCc-ccchhhhccCCCCceeccCCcCcCcCC
Q 001277 808 NLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLEDCKRLQSMP 850 (1109)
Q Consensus 808 ~l~~L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~L~~c~~L~~lp 850 (1109)
.+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9999999999999888 66654 788889999999888665443
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.2e-24 Score=262.73 Aligned_cols=366 Identities=20% Similarity=0.221 Sum_probs=270.7
Q ss_pred cEEEEccCCCCCCCCCC--CCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCcc--ccccccccCCCcEE
Q 001277 527 TLVILNLKDCTSLTTLP--GKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEE--LPLSIQHLTGLVLL 602 (1109)
Q Consensus 527 ~~~~l~l~~~~~l~~l~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L 602 (1109)
....|+++++. +..++ .+..+++|++|++++|. ++...+..++.+++|++|++++|.+.. +|..++.+++|++|
T Consensus 51 ~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 51 NLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred cccEEECCCCC-cCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 44677887763 34443 36789999999999998 888866668899999999999999985 46789999999999
Q ss_pred eCCCCcCCcccc-ccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcc-cCCCCCcEEeeeccCC
Q 001277 603 NLKDCKNLKSLS-HTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSI-ELLTGLQLLNLNNCSN 680 (1109)
Q Consensus 603 ~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~c~~ 680 (1109)
++++|..+..+| ..+.++++|++|++++|......|..++.+++|++|+++++.+..+|..+ +.+++|+.|++++|..
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence 999998777776 46899999999999999888889999999999999999999998887654 5689999999998765
Q ss_pred Cccc--CCC-----------------------------------------------------------CCC---------
Q 001277 681 LVRL--PSC-----------------------------------------------------------ING--------- 690 (1109)
Q Consensus 681 l~~l--p~~-----------------------------------------------------------i~~--------- 690 (1109)
.... |.. +..
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 4310 000 001
Q ss_pred --------------------CCCCcEEEecCCCCCcccCccc-CCCCCccEEecCCCcccCC----CccccccCCCcEEE
Q 001277 691 --------------------LRSLKTLNLSGCSKLQNVPETL-GQVESLEELDISGTAIRRP----PSSIFVMNNLKTLS 745 (1109)
Q Consensus 691 --------------------l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~L~~~~i~~~----p~~l~~l~~L~~L~ 745 (1109)
+.+|++|++++|. +..+|..+ ..+++|+.|++++|.+.+. +..++.+++|+.|+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 1234455555544 34566555 4689999999999998864 23467889999999
Q ss_pred ccCCCCCCCC---CCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCC
Q 001277 746 FSGCNGPPSS---TSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNF 822 (1109)
Q Consensus 746 L~~c~~~~~~---~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l 822 (1109)
+++|...... ..+.....+..+....+.+..+|..+..+++|++|+|++|.+.. +|..+ .++|++|+|++|++
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~--l~~~~--~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV--VKTCI--PQTLEVLDVSNNNL 443 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC--CCTTS--CTTCSEEECCSSCC
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc--ccchh--cCCceEEECCCCCh
Confidence 9999765432 11334556777777777778888889999999999999999853 55443 36899999999999
Q ss_pred cccchhhhccCCCCceeccCCcCcCcCCCC--CCCcceEeccCCcccccccccccccccccccccccccccccCcc---h
Q 001277 823 VTLPASINSLFNLGQLDLEDCKRLQSMPQL--PSNLYEVQVNGCASLVTLSGALKLCKSKCTSINCIGSLKLAGNN---G 897 (1109)
Q Consensus 823 ~~lp~~~~~l~~L~~L~L~~c~~L~~lp~l--p~~L~~L~~~~C~~L~~l~~~~~~~~~~~~~~~c~~~l~~~~~~---~ 897 (1109)
+.++ ..+++|+.|+|++|+ ++.+|.. .++|+.|++++| .++.++..... .+.-.+.|++++|. .
T Consensus 444 ~~~~---~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~------~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 444 DSFS---LFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRN-QLKSVPDGIFD------RLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp SCCC---CCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGG------GCTTCCEEECCSSCBCCC
T ss_pred hhhc---ccCChhcEEECCCCc-cCcCCCcccCccCCEEecCCC-ccCCcCHHHHh------cCcccCEEEecCCCccCC
Confidence 8876 578899999999984 5678753 478999999987 45555432111 11112255666652 2
Q ss_pred hH-HHHHHHHHhhc
Q 001277 898 LA-ISMLREYLKAV 910 (1109)
Q Consensus 898 ~~-~~~~~~~~~~~ 910 (1109)
.. +.++..|+...
T Consensus 513 ~~~~~~l~~~l~~~ 526 (549)
T 2z81_A 513 CPRIDYLSRWLNKN 526 (549)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHhc
Confidence 22 45666777643
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=267.76 Aligned_cols=313 Identities=19% Similarity=0.179 Sum_probs=144.0
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccc-cccccccCCCcEEeCCCCcCCcccccc--ccccC
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEEL-PLSIQHLTGLVLLNLKDCKNLKSLSHT--LRRLQ 621 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~l~ 621 (1109)
+..+++|++|++++|.....+.|..+..+++|++|+|++|.+..+ |..++++++|++|+|++|.....+|.. +.+++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 334444555555554333333333444445555555555544433 344455555555555554333323322 44455
Q ss_pred cCcEEEecCCCCCCccc-ccccCCCCCcEEeccCccCccc-CCcccCC--CCCcEEeeeccCCCcccCCCCCCCCC----
Q 001277 622 CLKNLTLSGCSKLKKFP-ESLGSMKDLMELFLDGTSIAEV-PSSIELL--TGLQLLNLNNCSNLVRLPSCINGLRS---- 693 (1109)
Q Consensus 622 ~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l--~~L~~L~L~~c~~l~~lp~~i~~l~~---- 693 (1109)
+|++|+|++|......+ ..++++++|++|+|++|.+..+ +..+..+ ++|+.|++++|......|..+..+.+
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 55555555544333222 3445555555555555544432 2333333 44555555554444444444333333
Q ss_pred --CcEEEecCCCCCcccCcccC------------------------------------C--CCCccEEecCCCcccCC-C
Q 001277 694 --LKTLNLSGCSKLQNVPETLG------------------------------------Q--VESLEELDISGTAIRRP-P 732 (1109)
Q Consensus 694 --L~~L~Ls~c~~l~~lp~~l~------------------------------------~--l~~L~~L~L~~~~i~~~-p 732 (1109)
|++|++++|.....++..+. . .++|+.|+|++|.+..+ |
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 66666666543322221111 1 14566666666655554 3
Q ss_pred ccccccCCCcEEEccCCCCCCCCC-CcccccccccccccCCCcccc-CCCCCCCCCCCEEecCCCCCCCCCcccccCCCC
Q 001277 733 SSIFVMNNLKTLSFSGCNGPPSST-SWHWHFPFNLMGQRSYPVALM-LPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLC 810 (1109)
Q Consensus 733 ~~l~~l~~L~~L~L~~c~~~~~~~-~~~~~~~~~~l~~~~~~~~~l-~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 810 (1109)
..+..+++|+.|+|++|......+ .+.....+..+.+..+.+..+ +..+.++++|+.|+|++|.+. ...+..+..++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~ 362 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLE 362 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCC
Confidence 445556666666666655433221 122223333343333333332 334445555555555555542 22233344555
Q ss_pred CCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCCCCCcceEeccC
Q 001277 811 SLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQVNG 863 (1109)
Q Consensus 811 ~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~~~~ 863 (1109)
+|+.|+|++|.++.++. +++|+.|++++|+ +..+|....+++.|++++
T Consensus 363 ~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 363 KLQTLDLRDNALTTIHF----IPSIPDIFLSGNK-LVTLPKINLTANLIHLSE 410 (844)
T ss_dssp CCCEEEEETCCSCCCSS----CCSCSEEEEESCC-CCCCCCCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCcccC----CCCcchhccCCCC-cccccccccccceeeccc
Confidence 55555555555544432 4455555555443 235555555666666554
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.2e-23 Score=246.21 Aligned_cols=278 Identities=19% Similarity=0.190 Sum_probs=218.0
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCc
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLK 624 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 624 (1109)
+..+++|++|++++|. ++.. |. ++.+++|++|+++++.++.+| ++.+++|++|++++|. +..+| ++++++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~-~~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDM-TG-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCC-TT-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCC
T ss_pred hhHcCCCCEEEccCCC-cccC-hh-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCC
Confidence 4456789999999886 7776 53 677888999999999998886 7889999999999875 45554 78899999
Q ss_pred EEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCC
Q 001277 625 NLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSK 704 (1109)
Q Consensus 625 ~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~ 704 (1109)
+|++++|.... +| ++.+++|++|++++|.+..++ ++.+++|+.|++++|..++.+ .+..+++|++|++++|..
T Consensus 110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 99999885444 54 888999999999999998875 788899999999998777776 367889999999999864
Q ss_pred CcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCC
Q 001277 705 LQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGL 784 (1109)
Q Consensus 705 l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l 784 (1109)
. .+| ++.+++|+.|++++|.++.++ +..+++|+.|++++|.... +| +..+
T Consensus 183 ~-~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-----------------------ip--~~~l 232 (457)
T 3bz5_A 183 T-ELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-----------------------ID--VTPL 232 (457)
T ss_dssp C-CCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-----------------------CC--CTTC
T ss_pred c-eec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-----------------------cC--cccc
Confidence 4 455 788899999999999998874 7888999999999886432 12 5677
Q ss_pred CCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch---------hhhccCCCCceeccCCcCcCcCCCCCCC
Q 001277 785 HSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA---------SINSLFNLGQLDLEDCKRLQSMPQLPSN 855 (1109)
Q Consensus 785 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~---------~~~~l~~L~~L~L~~c~~L~~lp~lp~~ 855 (1109)
++|+.|++++|.+.. +| ++.+++|+.|++++|+++.+.- ....+++|+.|++++|+.++.+|.-.++
T Consensus 233 ~~L~~L~l~~N~l~~--~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTE--LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred CCCCEEEeeCCcCCC--cC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCc
Confidence 889999999998854 33 4556666666555555443221 1356789999999999999988876678
Q ss_pred cceEeccCCccccccc
Q 001277 856 LYEVQVNGCASLVTLS 871 (1109)
Q Consensus 856 L~~L~~~~C~~L~~l~ 871 (1109)
|+.|++.+|++|+.+.
T Consensus 309 L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLY 324 (457)
T ss_dssp CSCCCCTTCTTCCEEE
T ss_pred ceEechhhcccCCEEE
Confidence 8888888888888764
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.3e-23 Score=247.92 Aligned_cols=302 Identities=21% Similarity=0.296 Sum_probs=247.7
Q ss_pred CCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEE
Q 001277 547 SMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNL 626 (1109)
Q Consensus 547 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 626 (1109)
.+++|+.|+++++. ++.+ +. +..+++|++|+++++.++.++. +..+++|++|++++|. +..++. +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~-i~~l-~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSI-DG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSC-CCCC-TT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred HhccccEEecCCCC-CccC-cc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEE
Confidence 35689999999987 7776 54 6778999999999999999987 9999999999999985 455555 8999999999
Q ss_pred EecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCc
Q 001277 627 TLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQ 706 (1109)
Q Consensus 627 ~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 706 (1109)
++++|... .++. +.++++|++|++++|.+..++. ++.+++|+.|++.+ ....++. +.++++|++|++++|.. .
T Consensus 118 ~L~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n~l-~ 190 (466)
T 1o6v_A 118 TLFNNQIT-DIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSNKV-S 190 (466)
T ss_dssp ECCSSCCC-CCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSSCC-C
T ss_pred ECCCCCCC-CChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh-hccCCCCCEEECcCCcC-C
Confidence 99998544 4444 8999999999999999998874 89999999999974 3334443 78999999999999974 4
Q ss_pred ccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCC
Q 001277 707 NVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHS 786 (1109)
Q Consensus 707 ~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~ 786 (1109)
.++ .+..+++|+.|++++|.+.+.+. +..+++|+.|++++|..... +.+.....+..+....+.+..+++ +..+++
T Consensus 191 ~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 266 (466)
T 1o6v_A 191 DIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTK 266 (466)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred CCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCC
Confidence 443 47889999999999999998865 78899999999999986543 334455567777777776666655 889999
Q ss_pred CCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCC-CCCCCcceEeccCCc
Q 001277 787 LSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMP-QLPSNLYEVQVNGCA 865 (1109)
Q Consensus 787 L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp-~lp~~L~~L~~~~C~ 865 (1109)
|+.|++++|.+.. ++. +..+++|+.|+|++|.++.++. +..+++|+.|+|++|......| .-.++|+.|++.+|
T Consensus 267 L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n- 341 (466)
T 1o6v_A 267 LTELKLGANQISN--ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN- 341 (466)
T ss_dssp CSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-
T ss_pred CCEEECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-
Confidence 9999999999954 444 8899999999999999998886 8899999999999996544333 23378999999998
Q ss_pred ccccc
Q 001277 866 SLVTL 870 (1109)
Q Consensus 866 ~L~~l 870 (1109)
.+..+
T Consensus 342 ~l~~~ 346 (466)
T 1o6v_A 342 KVSDV 346 (466)
T ss_dssp CCCCC
T ss_pred ccCCc
Confidence 45554
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2.7e-23 Score=265.37 Aligned_cols=322 Identities=19% Similarity=0.201 Sum_probs=231.5
Q ss_pred CCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeecccc-CCccc-cccccccCCCcEEeCCCCcCCccccc
Q 001277 538 SLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRT-TIEEL-PLSIQHLTGLVLLNLKDCKNLKSLSH 615 (1109)
Q Consensus 538 ~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~-~l~~l-~~~~~~l~~L~~L~L~~~~~l~~lp~ 615 (1109)
.+..+|. ..++|++|++++|. ++.+.+..+..+++|++|+++++ .+..+ |..++++++|++|+|++|......|.
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 5666776 45678888888887 77766677788888888888876 34455 56788888888888888776666677
Q ss_pred cccccCcCcEEEecCCCCCCccccc--ccCCCCCcEEeccCccCcccC--CcccCCCCCcEEeeeccCCCcccCCCCCCC
Q 001277 616 TLRRLQCLKNLTLSGCSKLKKFPES--LGSMKDLMELFLDGTSIAEVP--SSIELLTGLQLLNLNNCSNLVRLPSCINGL 691 (1109)
Q Consensus 616 ~l~~l~~L~~L~L~~~~~~~~~p~~--l~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l 691 (1109)
.+.++++|++|+|++|.....+|.. ++++++|++|+|++|.+..++ ..++++++|+.|+|++|......+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 7888888888888888776656654 788888888888888887653 457888888888888877666666666666
Q ss_pred --CCCcEEEecCCCCCcccCcccCCCCC------ccEEecCCCcccCC-Ccccc--------------------------
Q 001277 692 --RSLKTLNLSGCSKLQNVPETLGQVES------LEELDISGTAIRRP-PSSIF-------------------------- 736 (1109)
Q Consensus 692 --~~L~~L~Ls~c~~l~~lp~~l~~l~~------L~~L~L~~~~i~~~-p~~l~-------------------------- 736 (1109)
++|+.|++++|......|..++.+.+ |+.|++++|.+... +..+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 78888888888877777766665554 88888888865432 21111
Q ss_pred ----------c--cCCCcEEEccCCCCCCCCCC-cccccccccccccCCCcccc-CCCCCCCCCCCEEecCCCCCCCCCc
Q 001277 737 ----------V--MNNLKTLSFSGCNGPPSSTS-WHWHFPFNLMGQRSYPVALM-LPSLSGLHSLSKLDLSDCGLGEGAI 802 (1109)
Q Consensus 737 ----------~--l~~L~~L~L~~c~~~~~~~~-~~~~~~~~~l~~~~~~~~~l-~~~l~~l~~L~~L~Ls~~~l~~~~l 802 (1109)
. .++|+.|++++|......+. +.....+..+.+..+.+..+ +..+.++++|++|+|++|.+ .+..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-SCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-CccC
Confidence 1 25788888888765443222 23344555566665555544 44677888888888888887 3445
Q ss_pred ccccCCCCCCCEEeCCCCCCcccch-hhhccCCCCceeccCCcCcCcCCCCCCCcceEeccCCc
Q 001277 803 PNDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQVNGCA 865 (1109)
Q Consensus 803 p~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~~~~C~ 865 (1109)
|..++.+++|+.|+|++|.+..++. .+..+++|+.|+|++|. ++.++. .++|+.|++.+|.
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF-IPSIPDIFLSGNK 392 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS-CCSCSEEEEESCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccC-CCCcchhccCCCC
Confidence 7778888888888888888887764 46778888888888774 445555 4567888877764
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.6e-23 Score=241.61 Aligned_cols=298 Identities=18% Similarity=0.161 Sum_probs=215.5
Q ss_pred EEccCCCCCCCCCCC--CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCC
Q 001277 530 ILNLKDCTSLTTLPG--KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKD 606 (1109)
Q Consensus 530 ~l~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~ 606 (1109)
.++++++ .++.+|. +..+++|++|++++|. ++.+.+..+..+++|++|+++++.+..++. .++.+++|++|++++
T Consensus 49 ~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 49 IVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp EEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 3444443 3555665 4578889999999987 777756678888899999999999887754 578899999999998
Q ss_pred CcCCcccccc-ccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccC
Q 001277 607 CKNLKSLSHT-LRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLP 685 (1109)
Q Consensus 607 ~~~l~~lp~~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp 685 (1109)
|. +..+|.. +.++++|++|++++|......|..+..+++|++|++++|.+..++ ++.+++|+.|++++|... .+
T Consensus 127 n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~-~~- 201 (390)
T 3o6n_A 127 ND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS-TL- 201 (390)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS-EE-
T ss_pred Cc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc-cc-
Confidence 75 4566654 578899999999998777767778889999999999999988774 566788888888776432 22
Q ss_pred CCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCC-Cccccccc
Q 001277 686 SCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSST-SWHWHFPF 764 (1109)
Q Consensus 686 ~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~-~~~~~~~~ 764 (1109)
...++|++|++++|... .+|.. ..++|+.|++++|.+++. ..+..+++|+.|++++|......+ .+.....+
T Consensus 202 ---~~~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 202 ---AIPIAVEELDASHNSIN-VVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp ---ECCSSCSEEECCSSCCC-EEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ---CCCCcceEEECCCCeee-ecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 23345666666665532 22221 235566666666666554 345566666666666665433211 12233444
Q ss_pred ccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCc
Q 001277 765 NLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCK 844 (1109)
Q Consensus 765 ~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~ 844 (1109)
..+.+..+.+..++..+..+++|++|+|++|.+. .+|..++.+++|+.|+|++|.++.+| +..+++|+.|+|++|+
T Consensus 275 ~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CEEECCCCcCcccCcccCCCCCCCEEECCCCcce--ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence 5555555555556677788999999999999995 48888899999999999999999887 7789999999999986
Q ss_pred C
Q 001277 845 R 845 (1109)
Q Consensus 845 ~ 845 (1109)
.
T Consensus 351 ~ 351 (390)
T 3o6n_A 351 W 351 (390)
T ss_dssp E
T ss_pred c
Confidence 4
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.6e-23 Score=236.46 Aligned_cols=221 Identities=24% Similarity=0.410 Sum_probs=164.8
Q ss_pred CCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeee
Q 001277 597 TGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLN 676 (1109)
Q Consensus 597 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 676 (1109)
.+++.|++++|. +..+|..+.++++|++|+|++|... .+|..++++++|++|+|++|.+..+|..++.+++|++|+++
T Consensus 81 ~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 344444444432 2344444555555555555555433 55555556666666666666777777777788888888888
Q ss_pred ccCCCcccCCCCCC---------CCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEcc
Q 001277 677 NCSNLVRLPSCING---------LRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFS 747 (1109)
Q Consensus 677 ~c~~l~~lp~~i~~---------l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~ 747 (1109)
+|+..+.+|..+.. +++|++|++++|... .+|..++.+++|++|+|++|.+.++|..+..+++|+.|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 88877777776654 889999999988644 88888889999999999999999988888899999999999
Q ss_pred CCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc-ccc
Q 001277 748 GCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLP 826 (1109)
Q Consensus 748 ~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp 826 (1109)
+|..... +|..+.++++|++|+|++|++ .+.+|..++.+++|+.|+|++|++. .+|
T Consensus 238 ~n~~~~~----------------------~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 238 GCTALRN----------------------YPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TCTTCCB----------------------CCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCcchhh----------------------hHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 8865432 356678888999999999887 5678888899999999999998655 789
Q ss_pred hhhhccCCCCceeccCC
Q 001277 827 ASINSLFNLGQLDLEDC 843 (1109)
Q Consensus 827 ~~~~~l~~L~~L~L~~c 843 (1109)
..+..+++|+.+++..+
T Consensus 295 ~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGGGSCTTCEEECCGG
T ss_pred HHHhhccCceEEeCCHH
Confidence 99999999999888743
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=5.3e-23 Score=257.31 Aligned_cols=152 Identities=21% Similarity=0.186 Sum_probs=96.0
Q ss_pred EEEccCCCCCCCCCCC--CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCC
Q 001277 529 VILNLKDCTSLTTLPG--KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLK 605 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~ 605 (1109)
..++++.+ .+..++. +..+++|++|++++|. ++...|..++.+++|++|+++++.+..+|. .++.+++|++|+++
T Consensus 28 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 28 TVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp SEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred cEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 45566544 3334442 5566777777777765 666556666667777777777777777665 46777777777777
Q ss_pred CCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCc-c--cCCCCCcEEeeeccCCCc
Q 001277 606 DCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSS-I--ELLTGLQLLNLNNCSNLV 682 (1109)
Q Consensus 606 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i--~~l~~L~~L~L~~c~~l~ 682 (1109)
+|......|..+.++++|++|+|++|......|..++++++|++|++++|.+..++.. + ..+++|+.|++++|....
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 7654333335567777777777777766666666667777777777777776655432 2 234666666666654433
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1e-22 Score=231.03 Aligned_cols=260 Identities=17% Similarity=0.239 Sum_probs=176.9
Q ss_pred CcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccC
Q 001277 575 DLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDG 654 (1109)
Q Consensus 575 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 654 (1109)
+|+.++++++.++.+|..+ .++|++|++++|......|..+.++++|++|+|++|......|..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4667777777777776655 35777777777654333344677777777777777766555577777777777777777
Q ss_pred ccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCC--cccCcccCCCCCccEEecCCCcccCCC
Q 001277 655 TSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKL--QNVPETLGQVESLEELDISGTAIRRPP 732 (1109)
Q Consensus 655 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l--~~lp~~l~~l~~L~~L~L~~~~i~~~p 732 (1109)
|.+..+|..+. ++|++|++++|......+..+.++++|++|++++|... +..+..+..+ +|+.|++++|.++.+|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 77777776654 67777777776544333344667778888888777653 2455566666 7888888888887777
Q ss_pred ccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCC
Q 001277 733 SSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSL 812 (1109)
Q Consensus 733 ~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 812 (1109)
..+. ++|+.|++++|..... .+..+..+++|+.|+|++|.+. +..+..++.+++|
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~----------------------~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 243 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAI----------------------ELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTL 243 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCC----------------------CTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTC
T ss_pred cccc--CCCCEEECCCCcCCcc----------------------CHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCC
Confidence 6554 6788888877754322 1244667778888888888773 3344567778888
Q ss_pred CEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCC-----C-----CCCcceEeccCCc
Q 001277 813 KQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ-----L-----PSNLYEVQVNGCA 865 (1109)
Q Consensus 813 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~-----l-----p~~L~~L~~~~C~ 865 (1109)
+.|+|++|.++.+|..+..+++|+.|++++|+ ++.+|. . .++|+.|++.+++
T Consensus 244 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence 88888888888888778888888888888775 344431 1 2456777777766
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.9e-23 Score=253.60 Aligned_cols=272 Identities=20% Similarity=0.201 Sum_probs=207.7
Q ss_pred CCCCCC--CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCccccc
Q 001277 539 LTTLPG--KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSH 615 (1109)
Q Consensus 539 l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~ 615 (1109)
+..+|. +..+++|++|++++|. ++.+.+..++.+++|++|+|++|.+..++. .++.+++|++|+|++|. +..+|.
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~ 140 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPR 140 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCH
Confidence 344554 3457778888888876 777655567777888888888888877665 35778888888888774 445554
Q ss_pred c-ccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCC--------------
Q 001277 616 T-LRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSN-------------- 680 (1109)
Q Consensus 616 ~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~-------------- 680 (1109)
. ++++++|++|+|++|......|..++.+++|++|+|++|.+..++ ++.+++|+.|++++|..
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l 218 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDA 218 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEEC
T ss_pred HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeec
Confidence 3 577888888888887766666777788888888888888777664 34455555555444322
Q ss_pred ----CcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCCC
Q 001277 681 ----LVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSS 755 (1109)
Q Consensus 681 ----l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~ 755 (1109)
+..+|..+ .++|+.|+|++|...+ +..++.+++|+.|+|++|.+.+. |..+..+++|+.|+|++|....
T Consensus 219 s~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-- 292 (597)
T 3oja_B 219 SHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-- 292 (597)
T ss_dssp CSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--
T ss_pred cCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--
Confidence 22333322 3689999999998655 46788999999999999999987 7889999999999999986432
Q ss_pred CCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCC
Q 001277 756 TSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNL 835 (1109)
Q Consensus 756 ~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L 835 (1109)
++..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.++.+| +..+++|
T Consensus 293 ---------------------l~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L 347 (597)
T 3oja_B 293 ---------------------LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 347 (597)
T ss_dssp ---------------------EECSSSCCTTCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCC
T ss_pred ---------------------CCcccccCCCCcEEECCCCCCC--ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCC
Confidence 2445677899999999999995 48888999999999999999999887 7789999
Q ss_pred CceeccCCcC
Q 001277 836 GQLDLEDCKR 845 (1109)
Q Consensus 836 ~~L~L~~c~~ 845 (1109)
+.|+|++|+.
T Consensus 348 ~~L~l~~N~~ 357 (597)
T 3oja_B 348 KNLTLSHNDW 357 (597)
T ss_dssp SEEECCSSCE
T ss_pred CEEEeeCCCC
Confidence 9999999974
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=5.7e-24 Score=238.76 Aligned_cols=249 Identities=18% Similarity=0.245 Sum_probs=218.5
Q ss_pred CCCcEEeCCCCcCCc--cccccccccCcCcEEEecC-CCCCCcccccccCCCCCcEEeccCccCc-ccCCcccCCCCCcE
Q 001277 597 TGLVLLNLKDCKNLK--SLSHTLRRLQCLKNLTLSG-CSKLKKFPESLGSMKDLMELFLDGTSIA-EVPSSIELLTGLQL 672 (1109)
Q Consensus 597 ~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~L~~-~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 672 (1109)
.+++.|++++|.... .+|..+.++++|++|+|++ |.....+|..++++++|++|+|++|.+. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999987666 7899999999999999996 7777789999999999999999999998 78889999999999
Q ss_pred EeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCC-CccEEecCCCccc-CCCccccccCCCcEEEccCCC
Q 001277 673 LNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVE-SLEELDISGTAIR-RPPSSIFVMNNLKTLSFSGCN 750 (1109)
Q Consensus 673 L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~-~L~~L~L~~~~i~-~~p~~l~~l~~L~~L~L~~c~ 750 (1109)
|++++|.....+|..+.++++|++|++++|...+.+|..++.++ +|+.|++++|.+. ..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999988778999999999999999999998879999999998 9999999999998 5688888887 9999999986
Q ss_pred CCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc-ccchhh
Q 001277 751 GPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASI 829 (1109)
Q Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~ 829 (1109)
.... .+..+..+++|+.|+|++|.+. +.+| .+..+++|++|+|++|.++ .+|..+
T Consensus 209 l~~~----------------------~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 209 LEGD----------------------ASVLFGSDKNTQKIHLAKNSLA-FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EEEC----------------------CGGGCCTTSCCSEEECCSSEEC-CBGG-GCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred ccCc----------------------CCHHHhcCCCCCEEECCCCcee-eecC-cccccCCCCEEECcCCcccCcCChHH
Confidence 4321 2556788999999999999994 4444 4888999999999999999 789999
Q ss_pred hccCCCCceeccCCcCcCcCCCCC--CCcceEeccCCcccccc
Q 001277 830 NSLFNLGQLDLEDCKRLQSMPQLP--SNLYEVQVNGCASLVTL 870 (1109)
Q Consensus 830 ~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~~~~C~~L~~l 870 (1109)
..+++|+.|+|++|+....+|... ++|+.|++.+++.+...
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCC
Confidence 999999999999998888888753 46777788887766543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=4.2e-22 Score=225.72 Aligned_cols=261 Identities=23% Similarity=0.231 Sum_probs=127.2
Q ss_pred cceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCccccccccccCcCcEEEe
Q 001277 550 SLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTL 628 (1109)
Q Consensus 550 ~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 628 (1109)
+++.++++++. ++.+ |..+ .++|++|+++++.++.++. .+..+++|++|++++|......|..+.++++|++|+|
T Consensus 32 ~l~~l~~~~~~-l~~l-p~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKV-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSC-CCSC-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCC-cccc-CccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45555555544 4444 2211 2345555555555555443 4555555555555555433333444555555555555
Q ss_pred cCCCCCCcccccccCCCCCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCc--ccCCCCCCCCCCcEEEecCCCCC
Q 001277 629 SGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLV--RLPSCINGLRSLKTLNLSGCSKL 705 (1109)
Q Consensus 629 ~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l 705 (1109)
++|. +..+|..+. ++|++|++++|.+..++. .+..+++|+.|++++|.... ..+..+.++++|++|++++|..
T Consensus 108 s~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l- 183 (330)
T 1xku_A 108 SKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI- 183 (330)
T ss_dssp CSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-
T ss_pred CCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-
Confidence 5543 223443332 455555555555554443 24555555555555544321 3334445555555555555542
Q ss_pred cccCcccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCC
Q 001277 706 QNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGL 784 (1109)
Q Consensus 706 ~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l 784 (1109)
..+|..+. ++|++|++++|.++.. |..+..+++|+.|++++|..... .+..+..+
T Consensus 184 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------~~~~~~~l 239 (330)
T 1xku_A 184 TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV----------------------DNGSLANT 239 (330)
T ss_dssp CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE----------------------CTTTGGGS
T ss_pred ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee----------------------ChhhccCC
Confidence 23443332 4555555555555554 34455555555555555542211 01223445
Q ss_pred CCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhh-h------ccCCCCceeccCCc
Q 001277 785 HSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASI-N------SLFNLGQLDLEDCK 844 (1109)
Q Consensus 785 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~-~------~l~~L~~L~L~~c~ 844 (1109)
++|++|+|++|.+. .+|..+..+++|++|+|++|.++.+|... . ..+.|+.|++.+|+
T Consensus 240 ~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 240 PHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 55555555555553 35555555555555555555555544321 1 13455555555554
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.5e-22 Score=229.42 Aligned_cols=262 Identities=20% Similarity=0.263 Sum_probs=219.4
Q ss_pred CCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEecc
Q 001277 574 NDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLD 653 (1109)
Q Consensus 574 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 653 (1109)
.+|+.++++++.++.+|..+. ++|++|++++|......+..+.++++|++|+|++|......|..++++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 369999999999999997663 799999999986444444478999999999999998777779999999999999999
Q ss_pred CccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCc--ccCcccCCCCCccEEecCCCcccCC
Q 001277 654 GTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQ--NVPETLGQVESLEELDISGTAIRRP 731 (1109)
Q Consensus 654 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~~ 731 (1109)
+|.+..+|..+. ++|+.|++++|......+..+.++++|++|++++|.... ..+..+..+++|+.|++++|.++.+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 999999998765 799999999987665555567899999999999998643 5677889999999999999999999
Q ss_pred CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCC
Q 001277 732 PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCS 811 (1109)
Q Consensus 732 p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~ 811 (1109)
|..+. ++|+.|++++|..... .+..+..+++|+.|+|++|.+. +..+..+..+++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 241 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKV----------------------DAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPH 241 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEE----------------------CTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTT
T ss_pred Ccccc--ccCCEEECCCCcCCcc----------------------CHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCC
Confidence 87765 8999999999864321 1456788999999999999984 344557899999
Q ss_pred CCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCC--C--------CCCcceEeccCCc
Q 001277 812 LKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQ--L--------PSNLYEVQVNGCA 865 (1109)
Q Consensus 812 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~--l--------p~~L~~L~~~~C~ 865 (1109)
|+.|+|++|.++.+|..+..+++|+.|+|++|+ ++.+|. + ..+++.|++.+++
T Consensus 242 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 999999999999999999999999999999986 444442 1 2466777777765
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=3e-22 Score=250.54 Aligned_cols=83 Identities=31% Similarity=0.450 Sum_probs=42.2
Q ss_pred CCCCCCCCEEecCCCCCCC---CCcc----cccCCCCCCCEEeCCCCCCcccch-hhhccCCCCceeccCCcCcCcCCCC
Q 001277 781 LSGLHSLSKLDLSDCGLGE---GAIP----NDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLEDCKRLQSMPQL 852 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~---~~lp----~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~c~~L~~lp~l 852 (1109)
+.++++|+.|+|++|.+.. ..+| ..++.+++|+.|+|++|+++.+|. .+..+++|+.|+|++|. ++.+|.-
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~ 578 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPAS 578 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC-CCcCCHh
Confidence 4555566666666665532 0111 124555666666666666665554 24556666666665543 3344421
Q ss_pred ----CCCcceEeccCC
Q 001277 853 ----PSNLYEVQVNGC 864 (1109)
Q Consensus 853 ----p~~L~~L~~~~C 864 (1109)
.++|+.|++++|
T Consensus 579 ~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTTTCTTCCEEECTTS
T ss_pred HhCCCCCCCEEECCCC
Confidence 145555555555
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=5.5e-22 Score=234.20 Aligned_cols=289 Identities=18% Similarity=0.156 Sum_probs=195.1
Q ss_pred EEEEccCCCCCCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCC
Q 001277 528 LVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDC 607 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~ 607 (1109)
...++++++ .+..+|.+..+++|++|++++|. ++.+ + ++.+++|++|+++++.++.++ ++.+++|++|++++|
T Consensus 44 L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 44 LTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTL-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp CCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCC-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred CCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeE-c--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence 356777665 45566777788888888888887 7766 3 677788888888888888875 778888888888887
Q ss_pred cCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCc-cCcccCCcccCCCCCcEEeeeccCCCcccCC
Q 001277 608 KNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGT-SIAEVPSSIELLTGLQLLNLNNCSNLVRLPS 686 (1109)
Q Consensus 608 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 686 (1109)
. +..+| ++.+++|++|++++|.... ++ ++.+++|++|++++| .+..+ .++.+++|+.|++++|.. ..+|
T Consensus 117 ~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~- 186 (457)
T 3bz5_A 117 K-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD- 186 (457)
T ss_dssp C-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC-
T ss_pred c-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceec-
Confidence 4 44455 7788888888888875544 33 778888888888888 44455 367788888888888653 4455
Q ss_pred CCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCC-ccccc---
Q 001277 687 CINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTS-WHWHF--- 762 (1109)
Q Consensus 687 ~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~-~~~~~--- 762 (1109)
+..+++|++|++++|.... + .++.+++|+.|++++|.++++| +..+++|+.|++++|........ +..+.
T Consensus 187 -l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~ 260 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH 260 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred -cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEe
Confidence 6778888888888876443 3 3777888888888888888876 77788888888888865443210 00000
Q ss_pred ----ccccccccCCC-ccccCCCCCCCCCCCEEecCCCCCCCCCccc--------ccCCCCCCCEEeCCCCCCcccchhh
Q 001277 763 ----PFNLMGQRSYP-VALMLPSLSGLHSLSKLDLSDCGLGEGAIPN--------DIGNLCSLKQLNLSQNNFVTLPASI 829 (1109)
Q Consensus 763 ----~~~~l~~~~~~-~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~--------~l~~l~~L~~L~Ls~n~l~~lp~~~ 829 (1109)
.+..+....+. ...+| +..+++|+.|+|++|... +.+|. .++.+++|+.|+|++|+++.++ +
T Consensus 261 l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l-~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l 335 (457)
T 3bz5_A 261 CIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL-YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--V 335 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC-CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--C
T ss_pred ccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccc-ceeccCCCcceEechhhcccCCEEECCCCcccccc--c
Confidence 11122222211 11122 355677777777777542 22332 2455667777777777777664 6
Q ss_pred hccCCCCceeccCCc
Q 001277 830 NSLFNLGQLDLEDCK 844 (1109)
Q Consensus 830 ~~l~~L~~L~L~~c~ 844 (1109)
..+++|+.|++++|.
T Consensus 336 ~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAH 350 (457)
T ss_dssp TTCTTCSEEECCSSC
T ss_pred ccCCcCcEEECCCCC
Confidence 667777777777664
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=6.7e-23 Score=231.48 Aligned_cols=229 Identities=28% Similarity=0.416 Sum_probs=156.1
Q ss_pred CCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEE
Q 001277 548 MKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLT 627 (1109)
Q Consensus 548 l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 627 (1109)
...++.|+++++. ++.+ |..++.+++|++|+++++.+..+|..++.+++|++|++++|. +..+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~-l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQF-PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSC-CSSC-CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCC-chhc-ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 3568888888887 7776 666777888999999888888888888888889999888875 447888888888888888
Q ss_pred ecCCCCCCcccccccC---------CCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEE
Q 001277 628 LSGCSKLKKFPESLGS---------MKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLN 698 (1109)
Q Consensus 628 L~~~~~~~~~p~~l~~---------l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 698 (1109)
|++|...+.+|..+.. +++|++|+|++|.+..+|..++.+++|+.|+|++|... .+|..+..+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 8888888888776654 66666666666666666655666666666666654432 3444455555555555
Q ss_pred ecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccC
Q 001277 699 LSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALML 778 (1109)
Q Consensus 699 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 778 (1109)
+++|...+.+|..++.+++ |+.|+|++|..... +|
T Consensus 236 Ls~n~~~~~~p~~~~~l~~-----------------------L~~L~L~~n~~~~~----------------------~p 270 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAP-----------------------LKRLILKDCSNLLT----------------------LP 270 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCC-----------------------CCEEECTTCTTCCB----------------------CC
T ss_pred CcCCcchhhhHHHhcCCCC-----------------------CCEEECCCCCchhh----------------------cc
Confidence 5555555555555544444 55555544432221 24
Q ss_pred CCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccc
Q 001277 779 PSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP 826 (1109)
Q Consensus 779 ~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp 826 (1109)
..+..+++|++|+|++|++ .+.+|..++.+++|+.+++..+.+..++
T Consensus 271 ~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp TTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred hhhhcCCCCCEEeCCCCCc-hhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 4456667777777777776 4678888888888888888877555443
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=5.2e-22 Score=225.12 Aligned_cols=263 Identities=22% Similarity=0.228 Sum_probs=178.9
Q ss_pred CcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCccccccccccCcCcEEE
Q 001277 549 KSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLT 627 (1109)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 627 (1109)
.+++.++++++. ++.+ |..+ .++|++|+++++.+..++. .+..+++|++|++++|......|..+.++++|++|+
T Consensus 33 c~l~~l~~~~~~-l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLG-LKAV-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSC-CSSC-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCC-cccc-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 357777777776 6666 4323 3567788888777776643 677778888888877765444466677778888888
Q ss_pred ecCCCCCCcccccccCCCCCcEEeccCccCcccCCc-ccCCCCCcEEeeeccCCC--cccCCCCCCCCCCcEEEecCCCC
Q 001277 628 LSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSS-IELLTGLQLLNLNNCSNL--VRLPSCINGLRSLKTLNLSGCSK 704 (1109)
Q Consensus 628 L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l--~~lp~~i~~l~~L~~L~Ls~c~~ 704 (1109)
|++|.. ..+|..+. ++|++|++++|.+..+|.. +..+++|+.|++++|... ...|..+..+ +|++|++++|..
T Consensus 109 L~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 877643 35565544 6788888888888777653 677788888888777653 2445556666 788888877763
Q ss_pred CcccCcccCCCCCccEEecCCCcccCCC-ccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCC
Q 001277 705 LQNVPETLGQVESLEELDISGTAIRRPP-SSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSG 783 (1109)
Q Consensus 705 l~~lp~~l~~l~~L~~L~L~~~~i~~~p-~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~ 783 (1109)
..+|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|...... +..+..
T Consensus 185 -~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~ 239 (332)
T 2ft3_A 185 -TGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE----------------------NGSLSF 239 (332)
T ss_dssp -SSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC----------------------TTGGGG
T ss_pred -CccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC----------------------hhHhhC
Confidence 34665443 57788888888877774 56777788888888777543321 224566
Q ss_pred CCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchh-hhc------cCCCCceeccCCcCc
Q 001277 784 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPAS-INS------LFNLGQLDLEDCKRL 846 (1109)
Q Consensus 784 l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-~~~------l~~L~~L~L~~c~~L 846 (1109)
+++|++|+|++|.+. .+|..++.+++|+.|+|++|.++.+|.. +.. .++|+.|++.+|+..
T Consensus 240 l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 677777888777774 4777777777788888887777776642 221 456777777777643
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=5.2e-21 Score=225.62 Aligned_cols=294 Identities=22% Similarity=0.238 Sum_probs=177.2
Q ss_pred EEccCCCCCCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcC
Q 001277 530 ILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKN 609 (1109)
Q Consensus 530 ~l~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~ 609 (1109)
.+++++| .+..+|.. .++|++|++++|. ++.+ |.. +.+|++|+++++.+..++.. .++|++|++++|.
T Consensus 75 ~L~l~~~-~l~~lp~~--~~~L~~L~l~~n~-l~~l-p~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~- 142 (454)
T 1jl5_A 75 ELELNNL-GLSSLPEL--PPHLESLVASCNS-LTEL-PEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ- 142 (454)
T ss_dssp EEECTTS-CCSCCCSC--CTTCSEEECCSSC-CSSC-CCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-
T ss_pred EEEecCC-ccccCCCC--cCCCCEEEccCCc-CCcc-ccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-
Confidence 4555554 24444442 3567777777665 5554 432 35677777777766665532 2567777777664
Q ss_pred CccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCC
Q 001277 610 LKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCIN 689 (1109)
Q Consensus 610 l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~ 689 (1109)
+..+|. ++++++|++|++++|... .+|..+ .+|++|++++|.+..+| .++.+++|+.|++++|... .+|..
T Consensus 143 l~~lp~-~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~-- 213 (454)
T 1jl5_A 143 LEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL-- 213 (454)
T ss_dssp CSSCCC-CTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCC--
T ss_pred CCCCcc-cCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCC--
Confidence 334663 667777777777776433 355433 36777777777777666 4667777777777765433 34442
Q ss_pred CCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccc
Q 001277 690 GLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQ 769 (1109)
Q Consensus 690 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~ 769 (1109)
.++|++|++++|... .+|. ++.+++|++|++++|.++++|.. +++|+.|++++|........ ...+..+..
T Consensus 214 -~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~l 284 (454)
T 1jl5_A 214 -PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDV 284 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred -cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEEC
Confidence 246777777776433 5663 66677777777777777666542 36677777776654432111 123333444
Q ss_pred cCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcC
Q 001277 770 RSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSM 849 (1109)
Q Consensus 770 ~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~l 849 (1109)
..+.+..++.. .++|+.|++++|.+.. ++. ..++|+.|++++|+++.+|.. +++|+.|++++|. ++.+
T Consensus 285 s~N~l~~l~~~---~~~L~~L~l~~N~l~~--i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-l~~l 352 (454)
T 1jl5_A 285 SENIFSGLSEL---PPNLYYLNASSNEIRS--LCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEV 352 (454)
T ss_dssp CSSCCSEESCC---CTTCCEEECCSSCCSE--ECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCC
T ss_pred cCCccCcccCc---CCcCCEEECcCCcCCc--ccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCCCc-cccc
Confidence 44333333221 2577788888777732 331 124788888888888777754 5778888887774 5567
Q ss_pred CCCCCCcceEeccCCc
Q 001277 850 PQLPSNLYEVQVNGCA 865 (1109)
Q Consensus 850 p~lp~~L~~L~~~~C~ 865 (1109)
|..+++|+.|++++|.
T Consensus 353 p~~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 353 PELPQNLKQLHVEYNP 368 (454)
T ss_dssp CCCCTTCCEEECCSSC
T ss_pred cchhhhccEEECCCCC
Confidence 7777788888887764
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=7.6e-23 Score=234.13 Aligned_cols=277 Identities=16% Similarity=0.127 Sum_probs=216.7
Q ss_pred CCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCccccccccccCcCcEE
Q 001277 548 MKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNL 626 (1109)
Q Consensus 548 l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 626 (1109)
|+.....+.+++. ++.+ |..+ .++|++|+++++.++.++. .+..+++|++|++++|......|..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~-l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGS-LNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTT-CSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCC-cccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3344456666665 7776 5423 3479999999999988876 78899999999999986555556678899999999
Q ss_pred EecCCCCCCcccccccCCCCCcEEeccCccCcccCC--cccCCCCCcEEeeeccCCCccc-CCCCCCCCCCcEEEecCCC
Q 001277 627 TLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS--SIELLTGLQLLNLNNCSNLVRL-PSCINGLRSLKTLNLSGCS 703 (1109)
Q Consensus 627 ~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~ 703 (1109)
+|++|......+..++++++|++|++++|.+..+|. .+..+++|+.|++++|..+..+ +..+.++++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999986655444458999999999999999999987 6889999999999998766666 4678899999999999998
Q ss_pred CCcccCcccCCCCCccEEecCCCcccCCCccc-cccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCC
Q 001277 704 KLQNVPETLGQVESLEELDISGTAIRRPPSSI-FVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLS 782 (1109)
Q Consensus 704 ~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l-~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~ 782 (1109)
..+..|..++.+++|++|++++|.+..+|..+ ..+++|+.|++++|........ . .....
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------------------~-l~~~~ 246 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS------------------E-LSTGE 246 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc------------------c-ccccc
Confidence 87777889999999999999999998876554 4589999999999875432110 0 11123
Q ss_pred CCCCCCEEecCCCCCCCC---CcccccCCCCCCCEEeCCCCCCcccchhh-hccCCCCceeccCCcCcC
Q 001277 783 GLHSLSKLDLSDCGLGEG---AIPNDIGNLCSLKQLNLSQNNFVTLPASI-NSLFNLGQLDLEDCKRLQ 847 (1109)
Q Consensus 783 ~l~~L~~L~Ls~~~l~~~---~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~-~~l~~L~~L~L~~c~~L~ 847 (1109)
..+.++.++|+++.+... .+|..++.+++|+.|+|++|+++.+|..+ ..+++|++|+|++|+...
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 456788888888877432 36777888999999999999999999875 889999999999986543
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.8e-21 Score=241.53 Aligned_cols=129 Identities=27% Similarity=0.314 Sum_probs=89.1
Q ss_pred EEEccCCCCCCCCCCC--CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCC
Q 001277 529 VILNLKDCTSLTTLPG--KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLK 605 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~ 605 (1109)
..||++.. .++.++. +..+++|++|+|++|. ++.+.+..+..+++|++|+|++|.++.+|. .+..+++|++|+++
T Consensus 55 ~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 55 KNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 45666653 4555553 5677778888887776 777655566777778888888777777765 46777788888887
Q ss_pred CCcCCcccc-ccccccCcCcEEEecCCCCCC-cccccccCCCCCcEEeccCccCccc
Q 001277 606 DCKNLKSLS-HTLRRLQCLKNLTLSGCSKLK-KFPESLGSMKDLMELFLDGTSIAEV 660 (1109)
Q Consensus 606 ~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~~~i~~l 660 (1109)
+|. +..+| ..|+++++|++|+|++|.... ..|..++.+++|++|++++|.+..+
T Consensus 133 ~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 133 ETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 764 33444 347777788888887776543 4567777777888888877777654
No 55
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.88 E-value=3.1e-24 Score=208.02 Aligned_cols=134 Identities=16% Similarity=0.342 Sum_probs=95.9
Q ss_pred CCCCCcccEEEccccccCccchHHHHHHHHHh--CCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhh
Q 001277 8 NAFHGKYDAFLSFRGEDTRKSFTDHLYAALKN--KGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWC 85 (1109)
Q Consensus 8 ~~~~~~~dvfis~~~~D~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c 85 (1109)
....++|||||||+++|+ .|+++|+.+|++ .|+++|+|++++.+|+.+.++|.+||++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 445789999999999995 689999999998 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-CCceEEeEEeecccc----ccccccChhhHHHHHHHHHhhccHHHHHHHHHHH
Q 001277 86 LDELVKIVECKK-RDHEIFPIFYDVEPT----AVRKQTTSFGEAFAKHEEAFKDNIEKLQKWRDAL 146 (1109)
Q Consensus 86 ~~El~~~~~~~~-~~~~v~pv~~~v~p~----~vr~~~~~~~~a~~~~~~~~~~~~~~~~~w~~al 146 (1109)
+.|+..|+.+.. ...+||||||+|+++ .+|....... ..++..|....+.|.+|++||
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 999999999875 344788999999844 4555443222 123455555567788888764
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=6.7e-22 Score=233.22 Aligned_cols=285 Identities=20% Similarity=0.215 Sum_probs=150.2
Q ss_pred CCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCc-cccccccccCCC-------------cEEeCCCCcCCcc
Q 001277 547 SMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE-ELPLSIQHLTGL-------------VLLNLKDCKNLKS 612 (1109)
Q Consensus 547 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L-------------~~L~L~~~~~l~~ 612 (1109)
....|+.|+++++. +..+ |..++.+++|++|+++++.+. .+|.+++.+.+| ++|++++|. ++.
T Consensus 9 ~~~~L~~L~l~~n~-l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSN-LTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSS 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSC
T ss_pred ccccchhhhcccCc-hhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-ccc
Confidence 34556667776665 5554 555666677777777766655 566666665543 666776653 445
Q ss_pred ccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCC
Q 001277 613 LSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLR 692 (1109)
Q Consensus 613 lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~ 692 (1109)
+|.. .++|++|++++|.... +|.. +++|++|++++|.+..+|.. .++|++|++++|... .+| .+++++
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~ 153 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSS 153 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTCT
T ss_pred CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCc-ccCCCC
Confidence 5541 3566777776654433 5543 35666667766666665532 156666776665433 355 366666
Q ss_pred CCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCC
Q 001277 693 SLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSY 772 (1109)
Q Consensus 693 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~ 772 (1109)
+|++|++++|.. ..+|..+ .+|++|++++|.++++| .+..+++|+.|++++|........ ...+..+....+
T Consensus 154 ~L~~L~l~~N~l-~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 154 FLKIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNN 225 (454)
T ss_dssp TCCEEECCSSCC-SCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS
T ss_pred CCCEEECCCCcC-cccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCC
Confidence 677777766643 3355432 35666677666666665 466666667776666654432111 123334444444
Q ss_pred CccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCC
Q 001277 773 PVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQL 852 (1109)
Q Consensus 773 ~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~l 852 (1109)
.+..+| .+..+++|++|++++|.+.. +|.. +++|+.|++++|.++.+|.. +++|+.|++++|. +..+|.+
T Consensus 226 ~l~~lp-~~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~-l~~l~~~ 295 (454)
T 1jl5_A 226 ILEELP-ELQNLPFLTTIYADNNLLKT--LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENI-FSGLSEL 295 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCCSS--CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSEESCC
T ss_pred cCCccc-ccCCCCCCCEEECCCCcCCc--cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCc-cCcccCc
Confidence 444444 36666677777777776632 4432 35666666666666666643 3566666666654 4455555
Q ss_pred CCCcceEeccCC
Q 001277 853 PSNLYEVQVNGC 864 (1109)
Q Consensus 853 p~~L~~L~~~~C 864 (1109)
|++|+.|++.+|
T Consensus 296 ~~~L~~L~l~~N 307 (454)
T 1jl5_A 296 PPNLYYLNASSN 307 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcCCEEECcCC
Confidence 566666666555
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=230.66 Aligned_cols=243 Identities=24% Similarity=0.299 Sum_probs=158.8
Q ss_pred cceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCc
Q 001277 576 LSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGT 655 (1109)
Q Consensus 576 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 655 (1109)
...++..+..++.+|..+. ++++.|+|++|......+..|.++++|++|+|++|......+..+.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3445555555666665443 56666666666544334455666677777777766555555566667777777777777
Q ss_pred cCcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCc-ccCCCCCccEEecCCCcccCCCc
Q 001277 656 SIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPE-TLGQVESLEELDISGTAIRRPPS 733 (1109)
Q Consensus 656 ~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~~p~ 733 (1109)
.+..+|. .+..+++|+.|+|++|......+..+.++++|++|++++|..+..++. .+..+++|++|+|++|.++.+|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 7776664 466677777777776654433334566777777777777666666654 46677777777777777777763
Q ss_pred cccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCC
Q 001277 734 SIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLK 813 (1109)
Q Consensus 734 ~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 813 (1109)
+..+++|+.|+|++|..... .+..+.++++|+.|+|++|.+. ...+..+..+++|+
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAI----------------------RPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV 258 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEE----------------------CTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCC
T ss_pred -cCCCcccCEEECCCCccCcc----------------------ChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCC
Confidence 66777777777777653221 1345667777788888777773 34456677777888
Q ss_pred EEeCCCCCCcccchh-hhccCCCCceeccCCc
Q 001277 814 QLNLSQNNFVTLPAS-INSLFNLGQLDLEDCK 844 (1109)
Q Consensus 814 ~L~Ls~n~l~~lp~~-~~~l~~L~~L~L~~c~ 844 (1109)
.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 888888877777643 4667777777777665
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=1.5e-21 Score=231.22 Aligned_cols=242 Identities=27% Similarity=0.295 Sum_probs=145.5
Q ss_pred ceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCcc
Q 001277 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTS 656 (1109)
Q Consensus 577 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 656 (1109)
..++..+..++.+|..+. ++|++|+|++|......|..|.++++|++|+|++|......|..+.++++|++|+|++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 344445555555554432 456666666654444444556666666666666665544445566666666666666666
Q ss_pred CcccCCc-ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCc-ccCCCCCccEEecCCCcccCCCcc
Q 001277 657 IAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPE-TLGQVESLEELDISGTAIRRPPSS 734 (1109)
Q Consensus 657 i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~~p~~ 734 (1109)
+..+|.. +..+++|++|+|++|......+..+.++++|++|++++|..++.++. .+..+++|+.|+|++|.++.+| .
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence 6666543 55666666666666554333333556666666666666666665554 3566667777777777766665 3
Q ss_pred ccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCE
Q 001277 735 IFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQ 814 (1109)
Q Consensus 735 l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 814 (1109)
+..+++|+.|+|++|..... .+..+.++++|+.|+|++|.+ .+..|..+..+++|+.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEI----------------------RPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVE 270 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEE----------------------CGGGGTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCE
T ss_pred ccccccccEEECcCCcCccc----------------------CcccccCccCCCEEEeCCCcC-ceECHHHhcCCCCCCE
Confidence 56666777777766653221 134456666777777777776 3334556667777777
Q ss_pred EeCCCCCCcccchh-hhccCCCCceeccCCc
Q 001277 815 LNLSQNNFVTLPAS-INSLFNLGQLDLEDCK 844 (1109)
Q Consensus 815 L~Ls~n~l~~lp~~-~~~l~~L~~L~L~~c~ 844 (1109)
|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 77777777766643 4566677777776664
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=9.5e-21 Score=234.90 Aligned_cols=106 Identities=26% Similarity=0.338 Sum_probs=67.7
Q ss_pred EEEEccCCCCCCCCCCC--CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeC
Q 001277 528 LVILNLKDCTSLTTLPG--KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNL 604 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L 604 (1109)
...|+++.| .++.++. +..+++|++|+|++|. ++.+.+..+..+.+|++|++++|.++.++. .++++++|++|++
T Consensus 78 L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 78 LQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp CCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 356666655 3444442 5567777777777776 666655556667777777777777776664 3677777777777
Q ss_pred CCCcCCc-cccccccccCcCcEEEecCCCCCC
Q 001277 605 KDCKNLK-SLSHTLRRLQCLKNLTLSGCSKLK 635 (1109)
Q Consensus 605 ~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~ 635 (1109)
++|.... .+|..++.+++|++|+|++|....
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccc
Confidence 7765322 345666667777777777765433
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.9e-21 Score=217.89 Aligned_cols=245 Identities=23% Similarity=0.256 Sum_probs=179.2
Q ss_pred eEEEecCCCCCCcccccccCCcCCcceeeccccCCcccccc-ccccCCCcEEeCCCCcCCc--cccccccccCcCcEEEe
Q 001277 552 KTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLS-IQHLTGLVLLNLKDCKNLK--SLSHTLRRLQCLKNLTL 628 (1109)
Q Consensus 552 ~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~L 628 (1109)
+.++.+++. ++.+ |. ...++|++|+++++.++.+|.. +..+++|++|++++|.... ..|..+..+++|++|+|
T Consensus 10 ~~l~c~~~~-l~~i-p~--~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKG-LTSV-PT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSC-CSSC-CS--CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCC-cccC-CC--CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 355565554 6665 43 2235678888888878777765 5778888888888765321 12455666788888888
Q ss_pred cCCCCCCcccccccCCCCCcEEeccCccCcccCC--cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCc
Q 001277 629 SGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS--SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQ 706 (1109)
Q Consensus 629 ~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 706 (1109)
++|. +..+|..+..+++|++|++++|.+..++. .+..+++|+.|++++|......+..+..+++|++|++++|...+
T Consensus 86 s~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 8864 34567777888888888888888887764 67788888888888887666667777788888888888887655
Q ss_pred -ccCcccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCC
Q 001277 707 -NVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGL 784 (1109)
Q Consensus 707 -~lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l 784 (1109)
.+|..+..+++|++|+|++|.++++ |..+..+++|+.|++++|...... +..+..+
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l 222 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----------------------TFPYKCL 222 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC----------------------SGGGTTC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC----------------------hhhccCc
Confidence 4777888888888888888888877 667788888888888887643321 2235677
Q ss_pred CCCCEEecCCCCCCCCCcccccCCCC-CCCEEeCCCCCCcc
Q 001277 785 HSLSKLDLSDCGLGEGAIPNDIGNLC-SLKQLNLSQNNFVT 824 (1109)
Q Consensus 785 ~~L~~L~Ls~~~l~~~~lp~~l~~l~-~L~~L~Ls~n~l~~ 824 (1109)
++|+.|+|++|.+ .+..|..+..++ +|++|+|++|.++.
T Consensus 223 ~~L~~L~L~~N~l-~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 223 NSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCCEEECTTSCC-CBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCCEeECCCCCC-cccCHHHHHhhhccCCEEEccCCCeec
Confidence 8888888888888 455667777774 88888888888763
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=3e-21 Score=216.19 Aligned_cols=243 Identities=23% Similarity=0.224 Sum_probs=172.1
Q ss_pred cceeeccccCCccccccccccCCCcEEeCCCCcCCccccc-cccccCcCcEEEecCCCCCC--cccccccCCCCCcEEec
Q 001277 576 LSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSH-TLRRLQCLKNLTLSGCSKLK--KFPESLGSMKDLMELFL 652 (1109)
Q Consensus 576 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L 652 (1109)
-+.++.+++.++.+|..+ .++|++|++++|. +..+|. .+.++++|++|+|++|.... ..|..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCCC--CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 356788888889998765 3789999999975 456665 36889999999999986542 23666778899999999
Q ss_pred cCccCcccCCcccCCCCCcEEeeeccCCCcccC-CCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccC-
Q 001277 653 DGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLP-SCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRR- 730 (1109)
Q Consensus 653 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~- 730 (1109)
++|.+..+|..+..+++|++|++++|......+ ..+.++++|++|++++|......+..+..+++|++|++++|.+.+
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 999999988888889999999999875443322 467788888888888887766677777888888888888888775
Q ss_pred -CCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCC
Q 001277 731 -PPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNL 809 (1109)
Q Consensus 731 -~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 809 (1109)
.|..+..+++|+.|++++|..... .+..+..+++|++|+|++|.+.. ..+..+..+
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 222 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQL----------------------SPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL 222 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEE----------------------CTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCc----------------------CHHHhcCCCCCCEEECCCCccCc-cChhhccCc
Confidence 566777777777777777653221 13345566677777777776632 223345666
Q ss_pred CCCCEEeCCCCCCccc-chhhhccC-CCCceeccCCc
Q 001277 810 CSLKQLNLSQNNFVTL-PASINSLF-NLGQLDLEDCK 844 (1109)
Q Consensus 810 ~~L~~L~Ls~n~l~~l-p~~~~~l~-~L~~L~L~~c~ 844 (1109)
++|+.|+|++|.++.. |..+..++ +|+.|+|++|+
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6777777777766643 33444442 55555555553
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.4e-22 Score=227.52 Aligned_cols=248 Identities=23% Similarity=0.235 Sum_probs=203.0
Q ss_pred ccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcC-Ccccccccc-------ccCcCcEEEecCCCCCCccccc
Q 001277 569 FAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKN-LKSLSHTLR-------RLQCLKNLTLSGCSKLKKFPES 640 (1109)
Q Consensus 569 ~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~-l~~lp~~l~-------~l~~L~~L~L~~~~~~~~~p~~ 640 (1109)
+.+...+|++|++.++.+ .+|..+... |+.|++++|.. ...+|..+. ++++|++|+|++|.....+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 455667799999998888 888776655 88889988754 234555444 6899999999999888888887
Q ss_pred c--cCCCCCcEEeccCccCcccCCcccCC-----CCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcc--cCcc
Q 001277 641 L--GSMKDLMELFLDGTSIAEVPSSIELL-----TGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQN--VPET 711 (1109)
Q Consensus 641 l--~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--lp~~ 711 (1109)
+ ..+++|++|+|++|.+..+|..++.+ ++|++|+|++|......|..++++++|++|++++|...+. +|..
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6 89999999999999999888888777 9999999999887766668899999999999999987654 3444
Q ss_pred c--CCCCCccEEecCCCcccCCCc----cccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCC
Q 001277 712 L--GQVESLEELDISGTAIRRPPS----SIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLH 785 (1109)
Q Consensus 712 l--~~l~~L~~L~L~~~~i~~~p~----~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~ 785 (1109)
+ +.+++|++|+|++|.++.++. .+..+++|+.|++++|......+ .+.+..++
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------------~~~~~~l~ 253 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG---------------------APSCDWPS 253 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC---------------------CSCCCCCT
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc---------------------hhhhhhcC
Confidence 4 889999999999999986532 23567999999999987544321 13355678
Q ss_pred CCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcC
Q 001277 786 SLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 786 ~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~ 845 (1109)
+|++|+|++|.++ .+|..+. ++|++|+|++|+++.+|. +..+++|+.|+|++|+.
T Consensus 254 ~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 254 QLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 9999999999995 5888776 899999999999999987 88999999999999864
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.6e-20 Score=226.31 Aligned_cols=259 Identities=24% Similarity=0.252 Sum_probs=194.6
Q ss_pred EEEccCCCCCCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCc
Q 001277 529 VILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCK 608 (1109)
Q Consensus 529 ~~l~l~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~ 608 (1109)
..++++++ .++.+|.... ++|++|++++|. ++.+ |. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 43 ~~L~ls~n-~L~~lp~~l~-~~L~~L~L~~N~-l~~l-p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 43 AVLNVGES-GLTTLPDCLP-AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CEEECCSS-CCSCCCSCCC-TTCSEEEECSCC-CSCC-CC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred cEEEecCC-CcCccChhhC-CCCcEEEecCCC-CCCC-CC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 46666653 4566765433 788999998886 7766 44 56788899999888888886 67888889988874
Q ss_pred CCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCC
Q 001277 609 NLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCI 688 (1109)
Q Consensus 609 ~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i 688 (1109)
+..+|. .+++|++|++++|. +..+|.. +++|++|+|++|.+..+|.. +.+|+.|++++|. +..+|
T Consensus 113 -l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~--- 177 (622)
T 3g06_A 113 -LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLP--- 177 (622)
T ss_dssp -CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCC---
T ss_pred -CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCC-CCCCc---
Confidence 556665 46788888888875 4446653 47888889988888888753 4678888888864 44566
Q ss_pred CCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccccccccc
Q 001277 689 NGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMG 768 (1109)
Q Consensus 689 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~ 768 (1109)
..+++|+.|++++|.. ..+|.. +++|+.|++++|.++.+|.. +++|+.|++++|....
T Consensus 178 ~~~~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~--------------- 235 (622)
T 3g06_A 178 MLPSGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS--------------- 235 (622)
T ss_dssp CCCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC---------------
T ss_pred ccCCCCcEEECCCCCC-CCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc---------------
Confidence 3568888888888764 345543 46788888888888888753 4788888888875432
Q ss_pred ccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCc
Q 001277 769 QRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQS 848 (1109)
Q Consensus 769 ~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~ 848 (1109)
+| ..+++|+.|+|++|.+. .+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++|+....
T Consensus 236 --------lp---~~l~~L~~L~Ls~N~L~--~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 236 --------LP---VLPSELKELMVSGNRLT--SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp --------CC---CCCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred --------CC---CCCCcCcEEECCCCCCC--cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 12 34578999999999885 3776 67889999999999999999999999999999999876544
Q ss_pred CC
Q 001277 849 MP 850 (1109)
Q Consensus 849 lp 850 (1109)
.|
T Consensus 300 ~~ 301 (622)
T 3g06_A 300 TL 301 (622)
T ss_dssp HH
T ss_pred CH
Confidence 43
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=8.5e-20 Score=221.74 Aligned_cols=252 Identities=22% Similarity=0.223 Sum_probs=183.6
Q ss_pred cceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEec
Q 001277 550 SLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLS 629 (1109)
Q Consensus 550 ~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 629 (1109)
+++.|+++++. ++.+ |..+. ++|++|++++|.++.+|. .+++|++|+|++|. ++.+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~-L~~l-p~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESG-LTTL-PDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSC-CSCC-CSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCC-cCcc-ChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECc
Confidence 48899999887 7777 54343 679999999999988887 57889999999875 667776 57889999998
Q ss_pred CCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccC
Q 001277 630 GCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVP 709 (1109)
Q Consensus 630 ~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 709 (1109)
+|. +..+|. .+++|+.|++++|.+..+|.. +++|++|+|++|. +..+|. .+++|+.|++++|.. ..+|
T Consensus 110 ~N~-l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l-~~l~ 177 (622)
T 3g06_A 110 SNP-LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQL-TSLP 177 (622)
T ss_dssp SCC-CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC-SCCC
T ss_pred CCc-CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCC-CCCc
Confidence 874 444555 567888888888888888864 4788888888874 445554 356788888888764 4466
Q ss_pred cccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCE
Q 001277 710 ETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSK 789 (1109)
Q Consensus 710 ~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~ 789 (1109)
..+++|+.|++++|.++.+|.. +++|+.|++++|..... +. .+++|+.
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l-----------------------~~---~~~~L~~ 225 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSL-----------------------PA---LPSGLKE 225 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-----------------------CC---CCTTCCE
T ss_pred ---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccccc-----------------------CC---CCCCCCE
Confidence 4567788888888888887753 46788888887754321 11 2367888
Q ss_pred EecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCC---CCCcceEeccCCc
Q 001277 790 LDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQL---PSNLYEVQVNGCA 865 (1109)
Q Consensus 790 L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~~~~C~ 865 (1109)
|+|++|.+.. +| ..+++|+.|+|++|+++.+|. .+++|+.|+|++|. +..+|.. .++|+.|++.+|+
T Consensus 226 L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 226 LIVSGNRLTS--LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred EEccCCccCc--CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 8888888843 66 456788888888888888886 67788888888874 4466531 1455566665554
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=3.1e-20 Score=219.07 Aligned_cols=244 Identities=22% Similarity=0.277 Sum_probs=201.0
Q ss_pred ceEEEecCCCCCCcccccccCCcCCcceeeccccCCcccc-ccccccCCCcEEeCCCCcCCccccccccccCcCcEEEec
Q 001277 551 LKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELP-LSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLS 629 (1109)
Q Consensus 551 L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 629 (1109)
.+.++.++.. ++.+ |..+ .++++.|+|+++.+..++ ..+.++++|++|+|++|......+..+.++++|++|+|+
T Consensus 45 ~~~v~c~~~~-l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKN-LREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCC-CSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCC-cCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4566666654 7776 5423 367889999999888775 578899999999999986555555778899999999999
Q ss_pred CCCCCCcccccccCCCCCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCcccCC-CCCCCCCCcEEEecCCCCCcc
Q 001277 630 GCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPS-CINGLRSLKTLNLSGCSKLQN 707 (1109)
Q Consensus 630 ~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~ 707 (1109)
+|......+..+..+++|++|+|++|.+..+|. .+..+++|+.|+|++|+.+..++. .+.++++|++|+|++|. +..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccc
Confidence 986665555678999999999999999998875 688999999999999988888876 57889999999999986 456
Q ss_pred cCcccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCC
Q 001277 708 VPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHS 786 (1109)
Q Consensus 708 lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~ 786 (1109)
+| .+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|..... .+..+.++++
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------------~~~~~~~l~~ 256 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI----------------------ERNAFDNLQS 256 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE----------------------CTTSSTTCTT
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE----------------------ChhhhcCCCC
Confidence 66 478899999999999999988 77899999999999999864332 1445788999
Q ss_pred CCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc
Q 001277 787 LSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 787 L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~ 823 (1109)
|+.|+|++|++. ...+..+..+++|+.|+|++|.+.
T Consensus 257 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 257 LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCcc
Confidence 999999999995 344556789999999999999876
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=3.1e-22 Score=225.20 Aligned_cols=244 Identities=20% Similarity=0.165 Sum_probs=144.4
Q ss_pred cCCcCCcceeeccccCCcccc-ccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCc
Q 001277 570 AGSMNDLSELFLDRTTIEELP-LSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLM 648 (1109)
Q Consensus 570 ~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 648 (1109)
...+++|++|+++++.++.++ ..+..+++|++|++++|... .++. +..+++|++|+|++|... .++ .+++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~-~~~l~~L~~L~Ls~n~l~-~l~----~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-EEEE-ETTCTTCCEEECCSSEEE-EEE----ECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-cchh-hhhcCCCCEEECcCCccc-ccc----CCCCcC
Confidence 334455666666666666554 35566666666666665432 2332 566666666666665322 222 235666
Q ss_pred EEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCccc-CCCCCccEEecCCCc
Q 001277 649 ELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETL-GQVESLEELDISGTA 727 (1109)
Q Consensus 649 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~L~~~~ 727 (1109)
+|++++|.+..++.. .+++|+.|++++|......+..+..+++|++|++++|......+..+ ..+++|++|+|++|.
T Consensus 103 ~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 666666666655532 35666666666665544444455566666666666666554444444 356667777777776
Q ss_pred ccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccC
Q 001277 728 IRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIG 807 (1109)
Q Consensus 728 i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~ 807 (1109)
++.++... .+++|+.|++++|.... +++.+..+++|+.|+|++|.+. .+|..+.
T Consensus 181 l~~~~~~~-~l~~L~~L~Ls~N~l~~-----------------------l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~ 234 (317)
T 3o53_A 181 IYDVKGQV-VFAKLKTLDLSSNKLAF-----------------------MGPEFQSAAGVTWISLRNNKLV--LIEKALR 234 (317)
T ss_dssp CCEEECCC-CCTTCCEEECCSSCCCE-----------------------ECGGGGGGTTCSEEECTTSCCC--EECTTCC
T ss_pred Cccccccc-ccccCCEEECCCCcCCc-----------------------chhhhcccCcccEEECcCCccc--chhhHhh
Confidence 66664322 36666777766664321 2333555666777777777764 3666666
Q ss_pred CCCCCCEEeCCCCCCc--ccchhhhccCCCCceeccCCcCcCc
Q 001277 808 NLCSLKQLNLSQNNFV--TLPASINSLFNLGQLDLEDCKRLQS 848 (1109)
Q Consensus 808 ~l~~L~~L~Ls~n~l~--~lp~~~~~l~~L~~L~L~~c~~L~~ 848 (1109)
.+++|+.|+|++|.+. .+|..+..+++|+.|++.+|+.++.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 7777777777777766 5666666677777777765555443
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=9.4e-21 Score=209.76 Aligned_cols=221 Identities=23% Similarity=0.273 Sum_probs=97.1
Q ss_pred ceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCcc
Q 001277 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTS 656 (1109)
Q Consensus 577 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 656 (1109)
+.++.+++.++.+|..+ .++|+.|++++|......+..+..+++|++|+|++|......|..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34444455555555432 3455555555543222222334445555555555443333334444444444444444443
Q ss_pred -Cccc-CCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCcc
Q 001277 657 -IAEV-PSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSS 734 (1109)
Q Consensus 657 -i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~ 734 (1109)
+..+ |..+..+++|++|++++|......|..+.++++|++|++++|......+..++.+++|++|+|++|.++.+|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE- 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-
Confidence 4333 2334444444444444443333223333444444444444443322222233444444444444444444322
Q ss_pred ccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCE
Q 001277 735 IFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQ 814 (1109)
Q Consensus 735 l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 814 (1109)
..+..+++|+.|+|++|.+ .+..|..++.+++|+.
T Consensus 171 --------------------------------------------~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 171 --------------------------------------------RAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMT 205 (285)
T ss_dssp --------------------------------------------TTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred --------------------------------------------HHhcCccccCEEECCCCcc-cccCHhHccCcccccE
Confidence 1234444555555555554 2223444555555555
Q ss_pred EeCCCCCCcccch-hhhccCCCCceeccCCcC
Q 001277 815 LNLSQNNFVTLPA-SINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 815 L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~c~~ 845 (1109)
|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred eeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 5555555554442 245555555555555543
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=4e-20 Score=218.95 Aligned_cols=244 Identities=24% Similarity=0.276 Sum_probs=200.5
Q ss_pred ceEEEecCCCCCCcccccccCCcCCcceeeccccCCccc-cccccccCCCcEEeCCCCcCCccccccccccCcCcEEEec
Q 001277 551 LKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEEL-PLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLS 629 (1109)
Q Consensus 551 L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 629 (1109)
.+.++.++.. ++.+ |.. ..++|++|+|+++.++.+ +..+.++++|++|+|++|......|..+.++++|++|+|+
T Consensus 56 ~~~v~c~~~~-l~~i-P~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRG-LSEV-PQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSC-CSSC-CSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCC-cCcc-CCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4556666554 6666 432 236789999999888876 4578899999999999986555556778899999999999
Q ss_pred CCCCCCcccccccCCCCCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCcccCC-CCCCCCCCcEEEecCCCCCcc
Q 001277 630 GCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPS-CINGLRSLKTLNLSGCSKLQN 707 (1109)
Q Consensus 630 ~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~ 707 (1109)
+|......+..+..+++|++|+|++|.+..+|. .+..+++|+.|++++|+.+..++. .+.++++|++|+|++|.. ..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cc
Confidence 987665556678999999999999999998875 688999999999999999988876 478899999999999874 44
Q ss_pred cCcccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCC
Q 001277 708 VPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHS 786 (1109)
Q Consensus 708 lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~ 786 (1109)
+| .+..+++|+.|+|++|.++++ |..+..+++|+.|++++|..... .+..+.++++
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------------~~~~~~~l~~ 267 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI----------------------ERNAFDGLAS 267 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE----------------------CTTTTTTCTT
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE----------------------CHHHhcCCCC
Confidence 55 578899999999999999988 67889999999999999874332 1455788999
Q ss_pred CCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc
Q 001277 787 LSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 787 L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~ 823 (1109)
|+.|+|++|++. ...+..+..+++|+.|+|++|.+.
T Consensus 268 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 268 LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcC
Confidence 999999999995 344456788999999999999876
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=216.37 Aligned_cols=264 Identities=20% Similarity=0.206 Sum_probs=212.0
Q ss_pred CCCCCCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCcccc-ccccccCCCcEEeCCCCcCCcccccc
Q 001277 538 SLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELP-LSIQHLTGLVLLNLKDCKNLKSLSHT 616 (1109)
Q Consensus 538 ~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~lp~~ 616 (1109)
.++.+|.. -.++|++|++++|. ++.+.+..+..+++|++|+++++.++.++ ..+..+++|++|++++|.. ..+|..
T Consensus 42 ~l~~iP~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~ 118 (353)
T 2z80_A 42 SLNSIPSG-LTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSS 118 (353)
T ss_dssp TCSSCCTT-CCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHH
T ss_pred Cccccccc-ccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHh
Confidence 56666652 23589999999998 88885657889999999999999999875 5689999999999999864 455544
Q ss_pred -ccccCcCcEEEecCCCCCCcccc--cccCCCCCcEEeccCc-cCcccC-CcccCCCCCcEEeeeccCCCcccCCCCCCC
Q 001277 617 -LRRLQCLKNLTLSGCSKLKKFPE--SLGSMKDLMELFLDGT-SIAEVP-SSIELLTGLQLLNLNNCSNLVRLPSCINGL 691 (1109)
Q Consensus 617 -l~~l~~L~~L~L~~~~~~~~~p~--~l~~l~~L~~L~L~~~-~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l 691 (1109)
+.++++|++|+|++|... .+|. .+.++++|++|++++| .+..++ ..+..+++|+.|++++|......|..+.++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 889999999999998554 5665 7899999999999998 577774 578999999999999998777778899999
Q ss_pred CCCcEEEecCCCCCcccCcc-cCCCCCccEEecCCCcccCCCc-c---ccccCCCcEEEccCCCCCCCCCCccccccccc
Q 001277 692 RSLKTLNLSGCSKLQNVPET-LGQVESLEELDISGTAIRRPPS-S---IFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNL 766 (1109)
Q Consensus 692 ~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~~~i~~~p~-~---l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~ 766 (1109)
++|++|++++|.. ..+|.. +..+++|+.|++++|.+++.+. . ......++.+++.++....
T Consensus 198 ~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~------------- 263 (353)
T 2z80_A 198 QNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD------------- 263 (353)
T ss_dssp SEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH-------------
T ss_pred ccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC-------------
Confidence 9999999999885 455543 4568999999999999998742 2 2346678888888764221
Q ss_pred ccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCccccc-CCCCCCCEEeCCCCCCcccc
Q 001277 767 MGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDI-GNLCSLKQLNLSQNNFVTLP 826 (1109)
Q Consensus 767 l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l-~~l~~L~~L~Ls~n~l~~lp 826 (1109)
.....+|..+..+++|+.|+|++|.+. .+|..+ +.+++|++|+|++|.+..-+
T Consensus 264 -----~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 264 -----ESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp -----HHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred -----cchhhhHHHHhcccCCCEEECCCCCCC--ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 122334666788999999999999995 477774 89999999999999988543
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=1.1e-19 Score=201.27 Aligned_cols=195 Identities=23% Similarity=0.290 Sum_probs=128.8
Q ss_pred CCcEEeccCccCcccC-CcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCccc-CcccCCCCCccEEec
Q 001277 646 DLMELFLDGTSIAEVP-SSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNV-PETLGQVESLEELDI 723 (1109)
Q Consensus 646 ~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L 723 (1109)
+|++|++++|.+..++ ..+..+++|++|++++|......|..+.++++|++|++++|..+..+ |..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 4444444445555444 23455555555555555433333455556666666666666533333 455666667777777
Q ss_pred CCCcccCC-CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCc
Q 001277 724 SGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAI 802 (1109)
Q Consensus 724 ~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~l 802 (1109)
++|.++.+ |..+..+++|++|++++|...... +..+..+++|++|+|++|.+.. +
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~l~~n~l~~--~ 168 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALP----------------------DDTFRDLGNLTHLFLHGNRISS--V 168 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCCE--E
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccC----------------------HhHhccCCCccEEECCCCcccc--c
Confidence 77776666 445666777777777776533211 2346778899999999998843 4
Q ss_pred c-cccCCCCCCCEEeCCCCCCccc-chhhhccCCCCceeccCCcCcCcCC-C---CCCCcceEeccCCc
Q 001277 803 P-NDIGNLCSLKQLNLSQNNFVTL-PASINSLFNLGQLDLEDCKRLQSMP-Q---LPSNLYEVQVNGCA 865 (1109)
Q Consensus 803 p-~~l~~l~~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~c~~L~~lp-~---lp~~L~~L~~~~C~ 865 (1109)
| ..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|..- .+| . -.++|+.|++.+++
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCC
Confidence 4 4588999999999999999976 778999999999999998544 444 1 23577888887765
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=2.6e-20 Score=209.52 Aligned_cols=259 Identities=15% Similarity=0.073 Sum_probs=201.6
Q ss_pred cceeeccccCCccccc-cccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccC
Q 001277 576 LSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDG 654 (1109)
Q Consensus 576 L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 654 (1109)
+..++++.+.+...+. ....+++|++|++++|......|..+.++++|++|+|++|......+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 5556666666654443 34567799999999987665556789999999999999987655444 89999999999999
Q ss_pred ccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCC-Cc
Q 001277 655 TSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PS 733 (1109)
Q Consensus 655 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~ 733 (1109)
|.+..++. +++|+.|++++|......+. .+++|++|++++|......+..++.+++|+.|+|++|.+... +.
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 99988763 48999999999865544333 478899999999987776677888999999999999999987 44
Q ss_pred cc-cccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCC
Q 001277 734 SI-FVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSL 812 (1109)
Q Consensus 734 ~l-~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 812 (1109)
.+ ..+++|++|++++|..... +....+++|++|+|++|.+.. +|..+..+++|
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~------------------------~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L 216 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV------------------------KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGV 216 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE------------------------ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTC
T ss_pred HHhhccCcCCEEECCCCcCccc------------------------ccccccccCCEEECCCCcCCc--chhhhcccCcc
Confidence 44 4789999999999874321 123347899999999999953 77779999999
Q ss_pred CEEeCCCCCCcccchhhhccCCCCceeccCCcCc-CcCCCCC---CCcceEeccCCccccc
Q 001277 813 KQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRL-QSMPQLP---SNLYEVQVNGCASLVT 869 (1109)
Q Consensus 813 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L-~~lp~lp---~~L~~L~~~~C~~L~~ 869 (1109)
+.|+|++|.++.+|..+..+++|+.|+|++|+.. ..+|... +.|+.|++.+|..++.
T Consensus 217 ~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 9999999999999999999999999999999876 4444221 3455566655554443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=5.1e-20 Score=219.32 Aligned_cols=213 Identities=17% Similarity=0.098 Sum_probs=128.8
Q ss_pred CCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeec
Q 001277 598 GLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNN 677 (1109)
Q Consensus 598 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 677 (1109)
+|++|+|++|......|..+..+++|++|+|++|......| ++.+++|++|+|++|.+..+|. .++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 56666666654444444556666666666666655443333 6666666666666666665553 26666666666
Q ss_pred cCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCC-Ccccc-ccCCCcEEEccCCCCCCCC
Q 001277 678 CSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIF-VMNNLKTLSFSGCNGPPSS 755 (1109)
Q Consensus 678 c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~-~l~~L~~L~L~~c~~~~~~ 755 (1109)
|......+. .+++|++|+|++|...+..|..++.+++|+.|+|++|.+++. |..+. .+++|+.|+|++|.....
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 554333322 346667777776666555566666667777777777766664 44443 566777777766653221
Q ss_pred CCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCC
Q 001277 756 TSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNL 835 (1109)
Q Consensus 756 ~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L 835 (1109)
+....+++|+.|+|++|.+.. +|..++.+++|+.|+|++|.++.+|..+..+++|
T Consensus 185 -----------------------~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 185 -----------------------KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp -----------------------ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred -----------------------cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence 112345667777777776632 5555666777777777777777777666666677
Q ss_pred CceeccCCcC
Q 001277 836 GQLDLEDCKR 845 (1109)
Q Consensus 836 ~~L~L~~c~~ 845 (1109)
+.|++++|+.
T Consensus 240 ~~L~l~~N~l 249 (487)
T 3oja_A 240 EHFDLRGNGF 249 (487)
T ss_dssp CEEECTTCCB
T ss_pred CEEEcCCCCC
Confidence 7777766654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=3.3e-20 Score=220.99 Aligned_cols=236 Identities=19% Similarity=0.148 Sum_probs=172.8
Q ss_pred cCCcceeeccccCCcccc-ccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEe
Q 001277 573 MNDLSELFLDRTTIEELP-LSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELF 651 (1109)
Q Consensus 573 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 651 (1109)
+++|++|+|+++.+..++ ..+..+++|++|+|++|... ..+. +..+++|++|+|++|... .+| ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE-EEEE-CTTCTTCCEEECCSSEEE-EEE----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC-CCcc-cccCCCCCEEEecCCcCC-CCC----CCCCcCEEE
Confidence 345666666666666553 45666777777777766433 2333 666777777777776322 222 226777777
Q ss_pred ccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccC-CCCCccEEecCCCcccC
Q 001277 652 LDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLG-QVESLEELDISGTAIRR 730 (1109)
Q Consensus 652 L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~~~i~~ 730 (1109)
+++|.+..++.. .+++|+.|+|++|......|..++++++|++|+|++|...+..|..+. .+++|+.|+|++|.+++
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 777777766643 467788888888776666676777888888888888877776676665 68888888888888888
Q ss_pred CCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCC
Q 001277 731 PPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLC 810 (1109)
Q Consensus 731 ~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 810 (1109)
+|. ...+++|+.|+|++|.... +|+.+..+++|+.|+|++|.+. .+|..++.++
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~ 237 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLAF-----------------------MGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQ 237 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCCE-----------------------ECGGGGGGTTCSEEECTTSCCC--EECTTCCCCT
T ss_pred ccc-cccCCCCCEEECCCCCCCC-----------------------CCHhHcCCCCccEEEecCCcCc--ccchhhccCC
Confidence 754 3358889999998876432 2445677889999999999995 3888899999
Q ss_pred CCCEEeCCCCCCc--ccchhhhccCCCCceeccCC
Q 001277 811 SLKQLNLSQNNFV--TLPASINSLFNLGQLDLEDC 843 (1109)
Q Consensus 811 ~L~~L~Ls~n~l~--~lp~~~~~l~~L~~L~L~~c 843 (1109)
+|+.|+|++|.+. .+|..+..++.|+.|++..+
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 9999999999998 78888888888988888633
No 74
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.81 E-value=1.1e-20 Score=186.41 Aligned_cols=100 Identities=20% Similarity=0.343 Sum_probs=92.4
Q ss_pred CCCcccEEEccccccCccchHHHHHHHHHhC--CCceEeeCCCCCCCCCCcHHHHHHHH-hcceEEEEeccccccchhhH
Q 001277 10 FHGKYDAFLSFRGEDTRKSFTDHLYAALKNK--GIYVFKDDKELEKGGSISPNLLEAIE-ESRISIIVLSKNYASSTWCL 86 (1109)
Q Consensus 10 ~~~~~dvfis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~l~~~i~-~s~~~ivv~S~~y~~s~~c~ 86 (1109)
..+.|||||||+++| +.||.+|+.+|+++ |+++|+|++++.+|+.+.++|.+||+ +|+++|+|+||+|++|.||+
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 468999999999999 58999999999985 69999999999999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhcc--CCceEEeEEeeccc
Q 001277 87 DELVKIVECKK--RDHEIFPIFYDVEP 111 (1109)
Q Consensus 87 ~El~~~~~~~~--~~~~v~pv~~~v~p 111 (1109)
.|+..|+++.. .+++||||+|+..+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999864 55689999998754
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1e-20 Score=212.22 Aligned_cols=244 Identities=23% Similarity=0.224 Sum_probs=194.8
Q ss_pred CCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCc--ccccccc-------ccCCCcEEeCCCCcCCccccccc
Q 001277 547 SMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIE--ELPLSIQ-------HLTGLVLLNLKDCKNLKSLSHTL 617 (1109)
Q Consensus 547 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~--~l~~~~~-------~l~~L~~L~L~~~~~l~~lp~~l 617 (1109)
..++|+.|++++|. + .+ |..+... |+.|+++++.+. .+|..+. .+++|++|++++|.....+|..+
T Consensus 41 ~~~~L~~l~l~~n~-l-~~-p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT-E-AD-LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCT-T-CC-CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeecccc-c-cc-HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34568888888887 5 44 5433332 999999998886 3555554 68999999999998776788766
Q ss_pred --cccCcCcEEEecCCCCCCcccccccCC-----CCCcEEeccCccCcccC-CcccCCCCCcEEeeeccCCCcc--cCCC
Q 001277 618 --RRLQCLKNLTLSGCSKLKKFPESLGSM-----KDLMELFLDGTSIAEVP-SSIELLTGLQLLNLNNCSNLVR--LPSC 687 (1109)
Q Consensus 618 --~~l~~L~~L~L~~~~~~~~~p~~l~~l-----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~--lp~~ 687 (1109)
..+++|++|+|++|..... |..++.+ ++|++|+|++|.+..++ ..++.+++|++|++++|...+. +|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8899999999999876655 8877777 99999999999999887 7899999999999999986654 3334
Q ss_pred C--CCCCCCcEEEecCCCCCc--ccC-cccCCCCCccEEecCCCcccCCC--ccccccCCCcEEEccCCCCCCCCCCccc
Q 001277 688 I--NGLRSLKTLNLSGCSKLQ--NVP-ETLGQVESLEELDISGTAIRRPP--SSIFVMNNLKTLSFSGCNGPPSSTSWHW 760 (1109)
Q Consensus 688 i--~~l~~L~~L~Ls~c~~l~--~lp-~~l~~l~~L~~L~L~~~~i~~~p--~~l~~l~~L~~L~L~~c~~~~~~~~~~~ 760 (1109)
+ .++++|++|++++|.... .++ ..+..+++|++|+|++|.+++.+ ..+..+++|++|++++|....
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~------- 267 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ------- 267 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-------
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-------
Confidence 4 789999999999997542 333 33457899999999999999865 456678999999999987542
Q ss_pred ccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcc
Q 001277 761 HFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVT 824 (1109)
Q Consensus 761 ~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~ 824 (1109)
+|..+. ++|++|+|++|++.. +|. +..+++|++|+|++|.++.
T Consensus 268 ----------------ip~~~~--~~L~~L~Ls~N~l~~--~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 268 ----------------VPKGLP--AKLSVLDLSYNRLDR--NPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ----------------CCSSCC--SEEEEEECCSSCCCS--CCC-TTTSCEEEEEECTTCTTTC
T ss_pred ----------------hhhhcc--CCceEEECCCCCCCC--Chh-HhhCCCCCEEeccCCCCCC
Confidence 233344 789999999999954 576 8999999999999998874
No 76
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.80 E-value=1.4e-20 Score=188.48 Aligned_cols=102 Identities=26% Similarity=0.405 Sum_probs=88.9
Q ss_pred CCCCCcccEEEccccccCccchHHH-HHHHHHh--CCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchh
Q 001277 8 NAFHGKYDAFLSFRGEDTRKSFTDH-LYAALKN--KGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTW 84 (1109)
Q Consensus 8 ~~~~~~~dvfis~~~~D~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~ 84 (1109)
....+.|||||||+++|+ .||.+ |+++|++ +|+++|+|++++.+|+.+.++|.+||++|+++|+|+||+|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 346789999999999995 89986 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcc--CCceEEeEEeeccc
Q 001277 85 CLDELVKIVECKK--RDHEIFPIFYDVEP 111 (1109)
Q Consensus 85 c~~El~~~~~~~~--~~~~v~pv~~~v~p 111 (1109)
|+.|+..|+.+.. .+++||||||+.-|
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 9999999997543 56789999987443
No 77
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.79 E-value=1.1e-20 Score=184.49 Aligned_cols=98 Identities=23% Similarity=0.360 Sum_probs=89.7
Q ss_pred CCCcccEEEccccccCccchHHH-HHHHHHhC--CCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhhH
Q 001277 10 FHGKYDAFLSFRGEDTRKSFTDH-LYAALKNK--GIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWCL 86 (1109)
Q Consensus 10 ~~~~~dvfis~~~~D~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c~ 86 (1109)
..+.|||||||+++|+ .|+.+ |+++|++. |+++|+|++++.+|+.+.++|.+||++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3589999999999995 79997 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-CCceEEeEEeec
Q 001277 87 DELVKIVECK-K-RDHEIFPIFYDV 109 (1109)
Q Consensus 87 ~El~~~~~~~-~-~~~~v~pv~~~v 109 (1109)
.|+..|+.+. . .+++||||||+-
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~ 104 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999988643 3 567899999863
No 78
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.78 E-value=7.1e-20 Score=180.35 Aligned_cols=100 Identities=23% Similarity=0.387 Sum_probs=89.2
Q ss_pred CcccEEEccccccC---------ccchHHHHHH-HHH-hCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccc
Q 001277 12 GKYDAFLSFRGEDT---------RKSFTDHLYA-ALK-NKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYA 80 (1109)
Q Consensus 12 ~~~dvfis~~~~D~---------~~~~~~~l~~-~L~-~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~ 80 (1109)
+.|||||||+++|+ ++.||.++.. +|+ +.|+++|+|++++.+|+.+.++|.+||++|+++|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 3578888665 699 799999999999999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhcc--CCceEEeEEeeccc
Q 001277 81 -SSTWCLDELVKIVECKK--RDHEIFPIFYDVEP 111 (1109)
Q Consensus 81 -~s~~c~~El~~~~~~~~--~~~~v~pv~~~v~p 111 (1109)
+|.||+.|+..|+.+.. .+++||||+|+-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 99999999999998864 67899999986544
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=4.1e-21 Score=228.47 Aligned_cols=301 Identities=20% Similarity=0.179 Sum_probs=164.1
Q ss_pred CCCCcceEEEecCCCCCCcccc-cccCCcC----CcceeeccccCCc-----cccccccccCCCcEEeCCCCcCCccccc
Q 001277 546 ISMKSLKTLVLSGCLKLTKKCL-EFAGSMN----DLSELFLDRTTIE-----ELPLSIQHLTGLVLLNLKDCKNLKSLSH 615 (1109)
Q Consensus 546 ~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~----~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~L~~~~~l~~lp~ 615 (1109)
..+++|++|++++|. +....+ .+...+. +|++|+++++.+. .++..+..+++|++|++++|......+.
T Consensus 53 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 53 RVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp HTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred HhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 345667777777765 443212 1112222 5777777776666 3455666777777777777653222122
Q ss_pred ccc-----ccCcCcEEEecCCCCCC----cccccccCCCCCcEEeccCccCcccC-Cccc-----CCCCCcEEeeeccCC
Q 001277 616 TLR-----RLQCLKNLTLSGCSKLK----KFPESLGSMKDLMELFLDGTSIAEVP-SSIE-----LLTGLQLLNLNNCSN 680 (1109)
Q Consensus 616 ~l~-----~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~-----~l~~L~~L~L~~c~~ 680 (1109)
.+. ..++|++|+|++|.... .++..+..+++|++|++++|.+.... ..+. .+++|+.|++++|..
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 121 23467777777765443 23555566677777777777665321 1111 245777777777654
Q ss_pred Ccc----cCCCCCCCCCCcEEEecCCCCCcc----c-CcccCCCCCccEEecCCCcccC-----CCccccccCCCcEEEc
Q 001277 681 LVR----LPSCINGLRSLKTLNLSGCSKLQN----V-PETLGQVESLEELDISGTAIRR-----PPSSIFVMNNLKTLSF 746 (1109)
Q Consensus 681 l~~----lp~~i~~l~~L~~L~Ls~c~~l~~----l-p~~l~~l~~L~~L~L~~~~i~~-----~p~~l~~l~~L~~L~L 746 (1109)
... ++..+..+++|++|++++|..... + +.....+++|++|++++|.++. ++..+..+++|++|++
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 331 344555667777777777653221 1 1122346677777777777665 4555666777777777
Q ss_pred cCCCCCCCCCCcccccccccccccCCCccccCCCC-CCCCCCCEEecCCCCCCCCC---cccccCCCCCCCEEeCCCCCC
Q 001277 747 SGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSL-SGLHSLSKLDLSDCGLGEGA---IPNDIGNLCSLKQLNLSQNNF 822 (1109)
Q Consensus 747 ~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l-~~l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~Ls~n~l 822 (1109)
++|...... ...+...+ ...++|++|+|++|.++... ++..+..+++|++|+|++|.+
T Consensus 292 s~n~i~~~~------------------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 292 AGNELGDEG------------------ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp TTCCCHHHH------------------HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred CCCCCchHH------------------HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 776421100 00001111 12346777777777764321 344555667777777777766
Q ss_pred ccc-chhhh----c-cCCCCceeccCCcCcC----cCCCC---CCCcceEeccCCc
Q 001277 823 VTL-PASIN----S-LFNLGQLDLEDCKRLQ----SMPQL---PSNLYEVQVNGCA 865 (1109)
Q Consensus 823 ~~l-p~~~~----~-l~~L~~L~L~~c~~L~----~lp~l---p~~L~~L~~~~C~ 865 (1109)
+.. +..+. . .++|+.|+|++|..-. .+|.. .++|+.|++++|.
T Consensus 354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 632 12222 1 5577777777764322 33321 2566777776663
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=4.6e-21 Score=228.03 Aligned_cols=300 Identities=20% Similarity=0.220 Sum_probs=156.9
Q ss_pred CCCcceEEEecCCCCCCcc----cccccCCcCCcceeeccccCCccc-c-ccccccC----CCcEEeCCCCcCC----cc
Q 001277 547 SMKSLKTLVLSGCLKLTKK----CLEFAGSMNDLSELFLDRTTIEEL-P-LSIQHLT----GLVLLNLKDCKNL----KS 612 (1109)
Q Consensus 547 ~l~~L~~L~l~~~~~l~~~----~~~~~~~~~~L~~L~L~~~~l~~l-~-~~~~~l~----~L~~L~L~~~~~l----~~ 612 (1109)
.+++|++|++++|. ++.. .+..+..+++|++|+++++.+... + .....++ +|++|++++|... ..
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 34556666666665 4321 023344445566666666555421 1 1112233 4666666665432 13
Q ss_pred ccccccccCcCcEEEecCCCCCCcccccc-----cCCCCCcEEeccCccCcc-----cCCcccCCCCCcEEeeeccCCCc
Q 001277 613 LSHTLRRLQCLKNLTLSGCSKLKKFPESL-----GSMKDLMELFLDGTSIAE-----VPSSIELLTGLQLLNLNNCSNLV 682 (1109)
Q Consensus 613 lp~~l~~l~~L~~L~L~~~~~~~~~p~~l-----~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~ 682 (1109)
++..+..+++|++|+|++|......+..+ ...++|++|++++|.+.. ++..+..+++|+.|++++|....
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 45555556666666666654332222211 123456666666665553 23344555666666666654322
Q ss_pred ccCCCCC-----CCCCCcEEEecCCCCCcc----cCcccCCCCCccEEecCCCcccCC------CccccccCCCcEEEcc
Q 001277 683 RLPSCIN-----GLRSLKTLNLSGCSKLQN----VPETLGQVESLEELDISGTAIRRP------PSSIFVMNNLKTLSFS 747 (1109)
Q Consensus 683 ~lp~~i~-----~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~L~~~~i~~~------p~~l~~l~~L~~L~L~ 747 (1109)
..+..+. .+++|++|++++|..... ++..+..+++|++|++++|.+... +.....+++|++|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 1111111 234566666666643331 344455556666666666655442 1112235566666666
Q ss_pred CCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCC---ccccc-CCCCCCCEEeCCCCCCc
Q 001277 748 GCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGA---IPNDI-GNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 748 ~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~---lp~~l-~~l~~L~~L~Ls~n~l~ 823 (1109)
+|..... ....++..+..+++|++|+|++|.+.+.. +...+ ...++|++|+|++|.++
T Consensus 265 ~n~l~~~------------------~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 265 ECGITAK------------------GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp TSCCCHH------------------HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred CCCCCHH------------------HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 6542210 00113444566788888888888774211 11112 22368888888888887
Q ss_pred c-----cchhhhccCCCCceeccCCcCcCcC--------CCCCCCcceEeccCCc
Q 001277 824 T-----LPASINSLFNLGQLDLEDCKRLQSM--------PQLPSNLYEVQVNGCA 865 (1109)
Q Consensus 824 ~-----lp~~~~~l~~L~~L~L~~c~~L~~l--------p~lp~~L~~L~~~~C~ 865 (1109)
. ++..+..+++|+.|+|++|..-... +...++|+.|++++|.
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 4 5667778888888888888532211 1113588888888884
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=7.6e-18 Score=186.34 Aligned_cols=199 Identities=24% Similarity=0.228 Sum_probs=102.5
Q ss_pred cccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEE
Q 001277 594 QHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLL 673 (1109)
Q Consensus 594 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 673 (1109)
.++++|+.++++++ .++.+|..+. ++|++|+|++|......|..+..+++|++|+|++|.+..++.. +.+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 34445555555543 3344443332 4555555555544444445555555566666665666555443 445555555
Q ss_pred eeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCC
Q 001277 674 NLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPP 753 (1109)
Q Consensus 674 ~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~ 753 (1109)
++++|. +..+|..+..+++|++|++++|......+..+..+++|++|+|++|.++.+|.
T Consensus 83 ~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------- 141 (290)
T 1p9a_G 83 DLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-------------------- 141 (290)
T ss_dssp ECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--------------------
T ss_pred ECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh--------------------
Confidence 555542 23444444444444444444443332222334444444444444444444322
Q ss_pred CCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCccc-ccCCCCCCCEEeCCCCCCcccchhhhcc
Q 001277 754 SSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQNNFVTLPASINSL 832 (1109)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~~~~l 832 (1109)
..+..+++|+.|+|++|++.. +|. .+..+++|+.|+|++|.++.+|..+..+
T Consensus 142 -------------------------~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~ 194 (290)
T 1p9a_G 142 -------------------------GLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194 (290)
T ss_dssp -------------------------TTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred -------------------------hhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence 224455566666666666632 333 3456667777777777777777666666
Q ss_pred CCCCceeccCCc
Q 001277 833 FNLGQLDLEDCK 844 (1109)
Q Consensus 833 ~~L~~L~L~~c~ 844 (1109)
++|+.|+|++|+
T Consensus 195 ~~L~~l~L~~Np 206 (290)
T 1p9a_G 195 HLLPFAFLHGNP 206 (290)
T ss_dssp CCCSEEECCSCC
T ss_pred ccCCeEEeCCCC
Confidence 666666666553
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=3.2e-18 Score=188.39 Aligned_cols=213 Identities=22% Similarity=0.214 Sum_probs=108.4
Q ss_pred ccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccC-
Q 001277 583 RTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVP- 661 (1109)
Q Consensus 583 ~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp- 661 (1109)
..++..+|..+. ++|++|++++|......+..+.++++|++|+|++|......+..+.++++|++|+|++|.+..++
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 344455555432 45666666665432222234555666666666665433333344555555555555555555443
Q ss_pred CcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccC--CCccccccC
Q 001277 662 SSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRR--PPSSIFVMN 739 (1109)
Q Consensus 662 ~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~--~p~~l~~l~ 739 (1109)
..+..+++|+.|++++ |......+..++.+++|++|++++|.+.. +|..+..++
T Consensus 94 ~~~~~l~~L~~L~l~~------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~ 149 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVE------------------------TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (276)
T ss_dssp TTTTTCTTCCEEECTT------------------------SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred hhhcCCccccEEECCC------------------------CCccccCchhcccCCCCCEEECcCCccceecCchhhccCC
Confidence 3344455555555544 44333222234445555555555555544 344555555
Q ss_pred CCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCC----EEecCCCCCCCCCcccccCCCCCCCEE
Q 001277 740 NLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLS----KLDLSDCGLGEGAIPNDIGNLCSLKQL 815 (1109)
Q Consensus 740 ~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~----~L~Ls~~~l~~~~lp~~l~~l~~L~~L 815 (1109)
+|+.|++++|...... +..+..+++|+ .|++++|.+.. ++.......+|+.|
T Consensus 150 ~L~~L~Ls~N~l~~~~----------------------~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L 205 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIY----------------------CTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKEL 205 (276)
T ss_dssp TCCEEECCSSCCCEEC----------------------GGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEE
T ss_pred CCCEEECCCCCCCcCC----------------------HHHhhhhhhccccceeeecCCCcccc--cCccccCCCcccEE
Confidence 5555555555422110 11122222222 66666666632 44444444567777
Q ss_pred eCCCCCCcccchh-hhccCCCCceeccCCcC
Q 001277 816 NLSQNNFVTLPAS-INSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 816 ~Ls~n~l~~lp~~-~~~l~~L~~L~L~~c~~ 845 (1109)
+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 7777777766654 46677777777776653
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=5.7e-18 Score=186.35 Aligned_cols=212 Identities=20% Similarity=0.186 Sum_probs=145.1
Q ss_pred CCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCccccc
Q 001277 562 LTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPES 640 (1109)
Q Consensus 562 l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~ 640 (1109)
++.+ |..+ .++|++|+++++.++.++. .+..+++|++|++++|......+..+.++++|++|+|++|......+..
T Consensus 19 l~~i-p~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKI-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSC-CSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred cccc-CCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 5555 4422 3579999999999998876 7899999999999998655444557889999999999999877777788
Q ss_pred ccCCCCCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCc-ccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCc
Q 001277 641 LGSMKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLV-RLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESL 718 (1109)
Q Consensus 641 l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L 718 (1109)
+.++++|++|++++|.+..++. .++.+++|++|++++|.... .+|..+.++++|++|++++|......+..+..+++|
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 9999999999999999988765 57777777777777765433 245555555666666665555433333333333333
Q ss_pred c----EEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCC
Q 001277 719 E----ELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSD 794 (1109)
Q Consensus 719 ~----~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~ 794 (1109)
+ .|++++|.+..++... ....+|+.|+|++
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~~----------------------------------------------~~~~~L~~L~L~~ 209 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPGA----------------------------------------------FKEIRLKELALDT 209 (276)
T ss_dssp TTCCEEEECCSSCCCEECTTS----------------------------------------------SCSCCEEEEECCS
T ss_pred cccceeeecCCCcccccCccc----------------------------------------------cCCCcccEEECCC
Confidence 3 4444444444333222 2223567777777
Q ss_pred CCCCCCCcccccCCCCCCCEEeCCCCCCc
Q 001277 795 CGLGEGAIPNDIGNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 795 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~ 823 (1109)
|.+.. ..+..++.+++|+.|+|++|.+.
T Consensus 210 n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 210 NQLKS-VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCSC-CCTTTTTTCCSCCEEECCSSCBC
T ss_pred Cceee-cCHhHhcccccccEEEccCCccc
Confidence 77632 22334577788888888888766
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=1.7e-17 Score=183.55 Aligned_cols=203 Identities=22% Similarity=0.251 Sum_probs=151.2
Q ss_pred cCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcE
Q 001277 570 AGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLME 649 (1109)
Q Consensus 570 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 649 (1109)
+..+++|+.+++.++.++.+|..+. ++|+.|++++|......+..+..+++|++|+|++|... .++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCE
Confidence 3455667777777777777776653 67888888887655555666888888888888887543 34443 78889999
Q ss_pred EeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCccc
Q 001277 650 LFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIR 729 (1109)
Q Consensus 650 L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 729 (1109)
|+|++|.+..+|..+..+++|+.|++++|......|..+.++++|++|+|++|......+..+..+++|+.|+|++|.++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999999999988889999999999987665544567889999999999999766555556788999999999999888
Q ss_pred CCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCC
Q 001277 730 RPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNL 809 (1109)
Q Consensus 730 ~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 809 (1109)
.+|..+ +..+++|+.|+|++|.+. .+|..+..+
T Consensus 162 ~l~~~~---------------------------------------------~~~l~~L~~L~L~~N~l~--~ip~~~~~~ 194 (290)
T 1p9a_G 162 ELPAGL---------------------------------------------LNGLENLDTLLLQENSLY--TIPKGFFGS 194 (290)
T ss_dssp CCCTTT---------------------------------------------TTTCTTCCEEECCSSCCC--CCCTTTTTT
T ss_pred ccCHHH---------------------------------------------hcCcCCCCEEECCCCcCC--ccChhhccc
Confidence 776422 334455666666666663 366666667
Q ss_pred CCCCEEeCCCCCCc
Q 001277 810 CSLKQLNLSQNNFV 823 (1109)
Q Consensus 810 ~~L~~L~Ls~n~l~ 823 (1109)
++|+.|+|++|.+.
T Consensus 195 ~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 195 HLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCSEEECCSCCBC
T ss_pred ccCCeEEeCCCCcc
Confidence 77777777777665
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=3.3e-17 Score=179.53 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=61.4
Q ss_pred cCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCc-ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEec
Q 001277 622 CLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLS 700 (1109)
Q Consensus 622 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 700 (1109)
+|++|+|++|......+..+.++++|++|+|++|.+..+|.. +..+++|++|++++|......+..+.++++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 344444444433322223444445555555555555555433 2445555555555543322222334455555555555
Q ss_pred CCCCCcccCcccCCCCCccEEecCCCcccCCCcc-ccccCCCcEEEccCCC
Q 001277 701 GCSKLQNVPETLGQVESLEELDISGTAIRRPPSS-IFVMNNLKTLSFSGCN 750 (1109)
Q Consensus 701 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~-l~~l~~L~~L~L~~c~ 750 (1109)
+|......+..++.+++|++|+|++|.++.+|.. +..+++|+.|++++|.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 5544433344455555566666666655555432 3444555555554443
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=6e-17 Score=177.44 Aligned_cols=173 Identities=20% Similarity=0.238 Sum_probs=122.9
Q ss_pred CcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccC
Q 001277 575 DLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDG 654 (1109)
Q Consensus 575 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 654 (1109)
.++.++++++.++.+|..+. ++|+.|++++|......+..+.++++|++|+|++|......+..+.++++|++|+|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35667777777777776543 5677788877654333334677788888888888755544444567788888888888
Q ss_pred ccCcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCc
Q 001277 655 TSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS 733 (1109)
Q Consensus 655 ~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~ 733 (1109)
|.+..+|. .+..+++|+.|++++|......+..+..+++|++|+|++|......+..++.+++|++|+|++|.++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 88888775 45788889999998877655555667889999999999987554444457889999999999999988754
Q ss_pred -cccccCCCcEEEccCC
Q 001277 734 -SIFVMNNLKTLSFSGC 749 (1109)
Q Consensus 734 -~l~~l~~L~~L~L~~c 749 (1109)
.+..+++|+.|++++|
T Consensus 175 ~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNN 191 (270)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred hHhccCCCcCEEECCCC
Confidence 2444444444444444
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.2e-17 Score=183.24 Aligned_cols=181 Identities=18% Similarity=0.138 Sum_probs=107.7
Q ss_pred CCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEe
Q 001277 643 SMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELD 722 (1109)
Q Consensus 643 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 722 (1109)
.+++|++|++++|.+..++ .+..+++|++|++++|......+..+.++++|++|++++|...+..+..++.+++|++|+
T Consensus 61 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 3334444444444444332 344555555555555443333333345566666666666654444444456666677777
Q ss_pred cCCCcccCCCc-cccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCC
Q 001277 723 ISGTAIRRPPS-SIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGA 801 (1109)
Q Consensus 723 L~~~~i~~~p~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~ 801 (1109)
+++|.++.+|. .+..+++|+.|++++|...... +..+..+++|++|+|++|.+. +.
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~L~~N~l~-~~ 196 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP----------------------EGVFDKLTQLKDLRLYQNQLK-SV 196 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccC----------------------HHHhcCCccCCEEECCCCcCC-cc
Confidence 77776666643 3456677777777766533211 223566778888888888874 44
Q ss_pred cccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCCC
Q 001277 802 IPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQLP 853 (1109)
Q Consensus 802 lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~lp 853 (1109)
.|..++.+++|+.|+|++|.+. +.+++|+.|++..|.....+|...
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 4555788888888888888765 235678888888777777776543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=1.7e-19 Score=208.89 Aligned_cols=253 Identities=17% Similarity=0.132 Sum_probs=172.5
Q ss_pred cceeeccccCCccccccccccCCCcEEeCCCCcCCcc----ccccccccCcCcEEEecCCCC---CCcccccc-------
Q 001277 576 LSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKS----LSHTLRRLQCLKNLTLSGCSK---LKKFPESL------- 641 (1109)
Q Consensus 576 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~~---~~~~p~~l------- 641 (1109)
|+...+....+..++..+..+++|++|+|++|..... ++..+..+++|++|+|++|.. ...+|..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 4444445555566777777888888888888754433 333466788888888888632 22344443
Q ss_pred cCCCCCcEEeccCccCcc-----cCCcccCCCCCcEEeeeccCCCcc----cCCCCCCC---------CCCcEEEecCCC
Q 001277 642 GSMKDLMELFLDGTSIAE-----VPSSIELLTGLQLLNLNNCSNLVR----LPSCINGL---------RSLKTLNLSGCS 703 (1109)
Q Consensus 642 ~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~----lp~~i~~l---------~~L~~L~Ls~c~ 703 (1109)
..+++|++|+|++|.+.. +|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 678888888888888875 666778888888888888765322 22223333 788888888887
Q ss_pred CC-cccC---cccCCCCCccEEecCCCcccC------CCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCC
Q 001277 704 KL-QNVP---ETLGQVESLEELDISGTAIRR------PPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYP 773 (1109)
Q Consensus 704 ~l-~~lp---~~l~~l~~L~~L~L~~~~i~~------~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~ 773 (1109)
.. ..++ ..+..+++|++|+|++|.++. .|..+..+++|+.|+|++|..... .
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~------------------g 232 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL------------------G 232 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH------------------H
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH------------------H
Confidence 65 3444 456677888888888888872 244677888888888888753210 0
Q ss_pred ccccCCCCCCCCCCCEEecCCCCCCCC---Cccccc--CCCCCCCEEeCCCCCCcc-----cchhh-hccCCCCceeccC
Q 001277 774 VALMLPSLSGLHSLSKLDLSDCGLGEG---AIPNDI--GNLCSLKQLNLSQNNFVT-----LPASI-NSLFNLGQLDLED 842 (1109)
Q Consensus 774 ~~~l~~~l~~l~~L~~L~Ls~~~l~~~---~lp~~l--~~l~~L~~L~Ls~n~l~~-----lp~~~-~~l~~L~~L~L~~ 842 (1109)
...++..+..+++|++|+|++|.+... .++..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|+|++
T Consensus 233 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 122344566778888888888887431 135555 448888888888888886 78777 5678888888888
Q ss_pred CcCc
Q 001277 843 CKRL 846 (1109)
Q Consensus 843 c~~L 846 (1109)
|+.-
T Consensus 313 N~l~ 316 (386)
T 2ca6_A 313 NRFS 316 (386)
T ss_dssp SBSC
T ss_pred CcCC
Confidence 7543
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.4e-17 Score=182.79 Aligned_cols=208 Identities=20% Similarity=0.206 Sum_probs=123.3
Q ss_pred ccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCc-ccCCCCCc
Q 001277 593 IQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSS-IELLTGLQ 671 (1109)
Q Consensus 593 ~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~ 671 (1109)
...+++|+.|++++|. +..++. +..+++|++|+|++|.... + ..+..+++|++|++++|.+..++.. ++.+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3445555666655543 333433 5556666666666654332 2 2455666666666666666655543 45666666
Q ss_pred EEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCc-cccccCCCcEEEccCCC
Q 001277 672 LLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS-SIFVMNNLKTLSFSGCN 750 (1109)
Q Consensus 672 ~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~l~~l~~L~~L~L~~c~ 750 (1109)
+|++++|......+..+.++++|++|++++|......+..++.+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 66666655443333445666677777777665443333445667777777777777776644 34667777777777765
Q ss_pred CCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc-ccchhh
Q 001277 751 GPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASI 829 (1109)
Q Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~ 829 (1109)
..... +..+..+++|+.|+|++|.+. +.+++|+.|+++.|.++ .+|.++
T Consensus 193 l~~~~----------------------~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 193 LKSVP----------------------DGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CSCCC----------------------TTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CCccC----------------------HHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 33211 233566777888888877662 33567777887777776 577666
Q ss_pred hccCC
Q 001277 830 NSLFN 834 (1109)
Q Consensus 830 ~~l~~ 834 (1109)
+.++.
T Consensus 243 ~~~~~ 247 (272)
T 3rfs_A 243 GSVAP 247 (272)
T ss_dssp SCBCG
T ss_pred cccCC
Confidence 55443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=2.7e-17 Score=176.76 Aligned_cols=213 Identities=15% Similarity=0.221 Sum_probs=111.0
Q ss_pred eeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCccc-ccccCCCCCcEEeccC-cc
Q 001277 579 LFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFP-ESLGSMKDLMELFLDG-TS 656 (1109)
Q Consensus 579 L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~-~~ 656 (1109)
+.+.+..++.+|. + .++|++|++++|......+..+.++++|++|++++|..+..++ ..+.++++|++|++++ |.
T Consensus 16 ~~v~c~~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 16 FRVTCKDIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TEEEECSCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred ceeEccCccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 3344444555554 2 2355666665554222222245556666666666654233333 2455555555555555 55
Q ss_pred CcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCCCc---EEEecCCCCCcccCc-ccCCCCCcc-EEecCCCcccC
Q 001277 657 IAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLK---TLNLSGCSKLQNVPE-TLGQVESLE-ELDISGTAIRR 730 (1109)
Q Consensus 657 i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~---~L~Ls~c~~l~~lp~-~l~~l~~L~-~L~L~~~~i~~ 730 (1109)
+..+|. .+..+++|+.|++++|.. ..+|. +..+++|+ +|++++|..+..+|. .+..+++|+ .|++++|.++.
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence 555542 345555555555555442 23444 44444444 555555533333332 244455555 55555554444
Q ss_pred CCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCC-CCCCCcccccCCC
Q 001277 731 PPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCG-LGEGAIPNDIGNL 809 (1109)
Q Consensus 731 ~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~-l~~~~lp~~l~~l 809 (1109)
+|.... .. ++|+.|+|++|. +. ...+..+..+
T Consensus 171 i~~~~~---------------------------------------------~~-~~L~~L~L~~n~~l~-~i~~~~~~~l 203 (239)
T 2xwt_C 171 VQGYAF---------------------------------------------NG-TKLDAVYLNKNKYLT-VIDKDAFGGV 203 (239)
T ss_dssp ECTTTT---------------------------------------------TT-CEEEEEECTTCTTCC-EECTTTTTTC
T ss_pred cCHhhc---------------------------------------------CC-CCCCEEEcCCCCCcc-cCCHHHhhcc
Confidence 433222 22 456666666663 53 2223456667
Q ss_pred -CCCCEEeCCCCCCcccchhhhccCCCCceeccCCcC
Q 001277 810 -CSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 810 -~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~ 845 (1109)
++|+.|+|++|+++.+|.. .+++|+.|++++|..
T Consensus 204 ~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp SBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred ccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 7788888888877777755 677888888877654
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=7.9e-19 Score=199.30 Aligned_cols=251 Identities=20% Similarity=0.220 Sum_probs=118.0
Q ss_pred ceEEEecCCCCCCcccccccCCc--CCcceeeccccCCccccccccccCCCcEEeCCCCcCCcc-ccccccccCcCcEEE
Q 001277 551 LKTLVLSGCLKLTKKCLEFAGSM--NDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKS-LSHTLRRLQCLKNLT 627 (1109)
Q Consensus 551 L~~L~l~~~~~l~~~~~~~~~~~--~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~ 627 (1109)
++.|+++++. +. +..+..+ .+++.|++.++.+...+..+..+++|++|++++|..... +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~-~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKN-LH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCB-CC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeecccccc-CC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 5667776654 22 2223333 456666666665555544455555555555555542222 444455555555555
Q ss_pred ecCCCCCCcccccccCCCCCcEEeccCc-cCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCc
Q 001277 628 LSGCSKLKKFPESLGSMKDLMELFLDGT-SIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQ 706 (1109)
Q Consensus 628 L~~~~~~~~~p~~l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 706 (1109)
|++|......|..++.+++|++|++++| .+... .++..+.++++|++|++++|..+.
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHHHhcCCCCCEEcCCCCCCcC
Confidence 5555433344444444444444444444 33310 133333344444555554442222
Q ss_pred c--cCcccCCCC-CccEEecCCCc--c--cCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCC
Q 001277 707 N--VPETLGQVE-SLEELDISGTA--I--RRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLP 779 (1109)
Q Consensus 707 ~--lp~~l~~l~-~L~~L~L~~~~--i--~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 779 (1109)
. ++..+..++ +|++|+|++|. + ..+|..+..+++|+.|++++|...+. ..+.
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~---------------------~~~~ 241 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN---------------------DCFQ 241 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG---------------------GGGG
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH---------------------HHHH
Confidence 1 334444455 55555555552 2 22344444555566666655542111 0122
Q ss_pred CCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhcc-CCCCceeccCCcCcCcCCC
Q 001277 780 SLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSL-FNLGQLDLEDCKRLQSMPQ 851 (1109)
Q Consensus 780 ~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l-~~L~~L~L~~c~~L~~lp~ 851 (1109)
.+..+++|++|+|++|..........++.+++|+.|+|++| ++. ..+..+ .+|+.|++++|..-...|.
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCC
Confidence 34455666666666663111111124556677777777776 221 122222 2355566665554444443
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=3e-17 Score=183.46 Aligned_cols=190 Identities=23% Similarity=0.332 Sum_probs=122.4
Q ss_pred cCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEe
Q 001277 620 LQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNL 699 (1109)
Q Consensus 620 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 699 (1109)
+++|++|++++|.. ..+| .+..+++|++|++++|.+..++. +..+++|+.|++++|. +..++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i-~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCc-cCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 44444444444422 2222 34444555555555555555554 5555666666666554 33333 3556666777777
Q ss_pred cCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCC
Q 001277 700 SGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLP 779 (1109)
Q Consensus 700 s~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 779 (1109)
++|... .++. +..+++|++|++++|.++.++. +..+++|+.|++++|..... +.
T Consensus 115 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-----------------------~~ 168 (308)
T 1h6u_A 115 TSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-----------------------TP 168 (308)
T ss_dssp TTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-----------------------GG
T ss_pred CCCCCC-Cchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCC-----------------------hh
Confidence 666533 3433 6777778888888877777755 77778888888887753321 22
Q ss_pred CCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcC
Q 001277 780 SLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 780 ~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~ 845 (1109)
+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|.++.++ .+..+++|+.|++++|+.
T Consensus 169 -l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 6677888888888888843 443 788889999999999888887 478888888888888753
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.7e-17 Score=178.36 Aligned_cols=196 Identities=17% Similarity=0.223 Sum_probs=133.8
Q ss_pred CCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCcccCC-CCCCCCCCcEEEecCCCCCcccC-cccCCCCCccEEe
Q 001277 646 DLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPS-CINGLRSLKTLNLSGCSKLQNVP-ETLGQVESLEELD 722 (1109)
Q Consensus 646 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 722 (1109)
+|++|++++|.+..+|. .+..+++|+.|++++|..++.++. .+.++++|++|++++|..+..++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555566665554 456666666666666654444443 45566677777776633344444 4566777777777
Q ss_pred cCCCcccCCCccccccCCCc---EEEccCC-CCCCCCCCcccccccccccccCCCccccCCCCCCCCCCC-EEecCCCCC
Q 001277 723 ISGTAIRRPPSSIFVMNNLK---TLSFSGC-NGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLS-KLDLSDCGL 797 (1109)
Q Consensus 723 L~~~~i~~~p~~l~~l~~L~---~L~L~~c-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~-~L~Ls~~~l 797 (1109)
+++|.++.+|. +..+++|+ .|++++| ..... .+..+.++++|+ .|++++|++
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i----------------------~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSI----------------------PVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEE----------------------CTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhc----------------------CcccccchhcceeEEEcCCCCC
Confidence 77777777765 66666666 8888877 32211 023477888999 999999998
Q ss_pred CCCCcccccCCCCCCCEEeCCCC-CCcccch-hhhcc-CCCCceeccCCcCcCcCCC-CCCCcceEeccCCccc
Q 001277 798 GEGAIPNDIGNLCSLKQLNLSQN-NFVTLPA-SINSL-FNLGQLDLEDCKRLQSMPQ-LPSNLYEVQVNGCASL 867 (1109)
Q Consensus 798 ~~~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~-~~~~l-~~L~~L~L~~c~~L~~lp~-lp~~L~~L~~~~C~~L 867 (1109)
. .+|......++|+.|+|++| .++.+|. .+..+ ++|+.|+|++|+ ++.+|. ..++|+.|.+.++..|
T Consensus 169 ~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 169 T--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp C--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred c--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 5 47766555589999999999 5999874 57888 999999999975 456664 4578999999888754
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=187.12 Aligned_cols=221 Identities=20% Similarity=0.206 Sum_probs=164.1
Q ss_pred CCcEEeCCCCcCC----ccccccccccCcCcEEEecCCCCCCcccccc--cCCCCCcEEeccCccCcccC-----CcccC
Q 001277 598 GLVLLNLKDCKNL----KSLSHTLRRLQCLKNLTLSGCSKLKKFPESL--GSMKDLMELFLDGTSIAEVP-----SSIEL 666 (1109)
Q Consensus 598 ~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l--~~l~~L~~L~L~~~~i~~lp-----~~i~~ 666 (1109)
.++.|.+.++... ..+.. +..+++|++|+|++|......|..+ ..+++|++|+|++|.+.... ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3555666654321 11222 2235678888888888777777777 88888888888888887532 23456
Q ss_pred CCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcc--cC--cccCCCCCccEEecCCCcccCCCcc----cccc
Q 001277 667 LTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQN--VP--ETLGQVESLEELDISGTAIRRPPSS----IFVM 738 (1109)
Q Consensus 667 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--lp--~~l~~l~~L~~L~L~~~~i~~~p~~----l~~l 738 (1109)
+++|++|+|++|......|..+.++++|++|+|++|...+. ++ ..++.+++|++|+|++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 88999999999887666667888899999999999886542 22 3346788999999999999876542 4678
Q ss_pred CCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCC---CCCCCEEecCCCCCCCCCcccccCCCCCCCEE
Q 001277 739 NNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSG---LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQL 815 (1109)
Q Consensus 739 ~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~---l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L 815 (1109)
++|++|+|++|...... |..+.. +++|++|+|++|.+. .+|..+. ++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~----------------------p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L 277 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATV----------------------NPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVL 277 (310)
T ss_dssp CCCSSEECTTSCCCCCC----------------------CSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCE
T ss_pred CCCCEEECCCCCCCccc----------------------hhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEE
Confidence 99999999998754431 222333 379999999999995 4787764 899999
Q ss_pred eCCCCCCcccchhhhccCCCCceeccCCcCc
Q 001277 816 NLSQNNFVTLPASINSLFNLGQLDLEDCKRL 846 (1109)
Q Consensus 816 ~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L 846 (1109)
+|++|+++.+|. +..+++|+.|+|++|+..
T Consensus 278 ~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 278 DLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred ECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 999999998875 678899999999988643
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=7.8e-19 Score=199.33 Aligned_cols=177 Identities=23% Similarity=0.245 Sum_probs=134.3
Q ss_pred CcceEEEecCCCCCCcccccccCCcCCcceeeccccCCcc--ccccccccCCCcEEeCCCCcCCccccccccccCcCcEE
Q 001277 549 KSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEE--LPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNL 626 (1109)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 626 (1109)
++++.|+++++. +....+. ...+++|++|+++++.+.. ++..+..+++|++|++++|......+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCcc-ccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 679999999987 6666444 5678999999999998873 78888999999999999997665777788999999999
Q ss_pred EecCCCCCC--cccccccCCCCCcEEeccCc-cCcc--cCCcccCCC-CCcEEeeeccC-CC--cccCCCCCCCCCCcEE
Q 001277 627 TLSGCSKLK--KFPESLGSMKDLMELFLDGT-SIAE--VPSSIELLT-GLQLLNLNNCS-NL--VRLPSCINGLRSLKTL 697 (1109)
Q Consensus 627 ~L~~~~~~~--~~p~~l~~l~~L~~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~~c~-~l--~~lp~~i~~l~~L~~L 697 (1109)
+|++|..+. .++..+.++++|++|++++| .+.. ++..+..++ +|++|++++|. .+ ..+|..+.++++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 999996555 47777888999999999999 8874 566677788 88888888874 22 3345445566677777
Q ss_pred EecCCCC-CcccCcccCCCCCccEEecCCCc
Q 001277 698 NLSGCSK-LQNVPETLGQVESLEELDISGTA 727 (1109)
Q Consensus 698 ~Ls~c~~-l~~lp~~l~~l~~L~~L~L~~~~ 727 (1109)
++++|.. ....+..+..+++|++|+|++|.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 7777663 33444555555666666665553
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=4.3e-17 Score=182.11 Aligned_cols=197 Identities=19% Similarity=0.300 Sum_probs=141.7
Q ss_pred cccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEE
Q 001277 594 QHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLL 673 (1109)
Q Consensus 594 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 673 (1109)
..+++|+.|++++| .+..+|. +..+++|++|+|++|... .++. +..+++|++|+|++|.+..++ .+..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l~~-~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTIEG-VQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCC-CccCchh-hhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 45666777777665 3445553 666777777777776433 3333 677777777777777777665 47777778888
Q ss_pred eeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCC
Q 001277 674 NLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPP 753 (1109)
Q Consensus 674 ~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~ 753 (1109)
++++|.. ..++. +..+++|++|++++|... .++. ++.+++|+.|++++|.++.++. +..+++|+.|++++|....
T Consensus 113 ~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQI-TDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCC-CCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCC-CCchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence 8777653 33443 677888888888887643 3433 7788888888888888888766 7888899999998876432
Q ss_pred CCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch
Q 001277 754 SSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA 827 (1109)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 827 (1109)
. + .+..+++|++|+|++|.+.. ++ .+..+++|+.|+|++|.++..|.
T Consensus 188 ~-----------------------~-~l~~l~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 188 I-----------------------S-PLASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp C-----------------------G-GGGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred C-----------------------h-hhcCCCCCCEEEccCCccCc--cc-cccCCCCCCEEEccCCeeecCCe
Confidence 1 1 15678899999999999854 44 38899999999999999987774
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=6.7e-17 Score=184.24 Aligned_cols=170 Identities=14% Similarity=0.142 Sum_probs=101.5
Q ss_pred ceeeccccCCccccccccccCCCcEEeCCCCcCCccccc-cccccCcCcEEEecCCCCCCcccc-cccCCCCCcE-Eecc
Q 001277 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSH-TLRRLQCLKNLTLSGCSKLKKFPE-SLGSMKDLME-LFLD 653 (1109)
Q Consensus 577 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~-L~L~ 653 (1109)
+.++.++++++++|..+ .++|+.|+|++|. ++.+|. .|.++++|++|+|++|...+.+|. .+.++++|.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34455555566666544 3456666666653 444543 456666777777776665555543 4556666554 4445
Q ss_pred CccCcccC-CcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCc-ccCCC-CCccEEecCCCcccC
Q 001277 654 GTSIAEVP-SSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPE-TLGQV-ESLEELDISGTAIRR 730 (1109)
Q Consensus 654 ~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l-~~L~~L~L~~~~i~~ 730 (1109)
+|.+..++ ..+..+++|+.|++++|......+..+....++..|++.++..+..++. .+..+ ..|+.|+|++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 56676664 4466777777777777654433333444556677777777666666654 23333 357778888888777
Q ss_pred CCccccccCCCcEEEccCC
Q 001277 731 PPSSIFVMNNLKTLSFSGC 749 (1109)
Q Consensus 731 ~p~~l~~l~~L~~L~L~~c 749 (1109)
+|..+....+|+.|++.+|
T Consensus 169 i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp ECTTSSTTEEEEEEECTTC
T ss_pred CChhhccccchhHHhhccC
Confidence 7666555556666666543
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1.1e-18 Score=214.56 Aligned_cols=316 Identities=14% Similarity=0.062 Sum_probs=159.9
Q ss_pred CCCcceEEEecCCCCCCccc----ccccCCcCCcceeeccccCCc-----cccccccccCCCcEEeCCCCcCCccccccc
Q 001277 547 SMKSLKTLVLSGCLKLTKKC----LEFAGSMNDLSELFLDRTTIE-----ELPLSIQHLTGLVLLNLKDCKNLKSLSHTL 617 (1109)
Q Consensus 547 ~l~~L~~L~l~~~~~l~~~~----~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l 617 (1109)
.+++|++|++++|. +.... +.+...+++|++|+++++.+. .++..+.++++|+.|++++|. +..+|..+
T Consensus 162 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF 239 (592)
T ss_dssp HCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH
T ss_pred hCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH
Confidence 45667777777764 33221 223345566777777766664 334445566777777777654 33455556
Q ss_pred cccCcCcEEEecCCCCC---CcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcc-cCCCCCCCCC
Q 001277 618 RRLQCLKNLTLSGCSKL---KKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVR-LPSCINGLRS 693 (1109)
Q Consensus 618 ~~l~~L~~L~L~~~~~~---~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~-lp~~i~~l~~ 693 (1109)
.++++|++|+++++... ...+..+..+++|+.|+++++....+|..+..+++|++|+|++|..... ++..+..+++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 66667777766643222 2233444555556666555554445555555555666666665552111 1122344555
Q ss_pred CcEEEecCCCCCcccCcccCCCCCccEEecCC-----------CcccCC--CccccccCCCcEEEccCCCCCCCCCC-cc
Q 001277 694 LKTLNLSGCSKLQNVPETLGQVESLEELDISG-----------TAIRRP--PSSIFVMNNLKTLSFSGCNGPPSSTS-WH 759 (1109)
Q Consensus 694 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~-----------~~i~~~--p~~l~~l~~L~~L~L~~c~~~~~~~~-~~ 759 (1109)
|++|+++++-....++.....+++|++|+|++ +.++.. +.....+++|++|+++.+........ +.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 55555542221122222223344455555541 222211 11122344444444432221100000 00
Q ss_pred -ccccccccccc----CCCcc------ccCCCCCCCCCCCEEecCCCC--CCCCCcccccCCCCCCCEEeCCCCCCc--c
Q 001277 760 -WHFPFNLMGQR----SYPVA------LMLPSLSGLHSLSKLDLSDCG--LGEGAIPNDIGNLCSLKQLNLSQNNFV--T 824 (1109)
Q Consensus 760 -~~~~~~~l~~~----~~~~~------~l~~~l~~l~~L~~L~Ls~~~--l~~~~lp~~l~~l~~L~~L~Ls~n~l~--~ 824 (1109)
....+..+... ...+. .++..+.++++|++|+|++|. +++..+......+++|+.|+|++|+++ .
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 00011111110 00111 122234567888888887654 433222222234788999999988887 3
Q ss_pred cchhhhccCCCCceeccCCcCcCc--CCC---CCCCcceEeccCCc
Q 001277 825 LPASINSLFNLGQLDLEDCKRLQS--MPQ---LPSNLYEVQVNGCA 865 (1109)
Q Consensus 825 lp~~~~~l~~L~~L~L~~c~~L~~--lp~---lp~~L~~L~~~~C~ 865 (1109)
++..+..+++|+.|+|++|+ +.. ++. -.++|+.|++++|.
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 56667788889999999888 332 222 23678888888887
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=1.3e-18 Score=201.46 Aligned_cols=254 Identities=17% Similarity=0.184 Sum_probs=177.8
Q ss_pred cCCcCCcceeeccccCCcc-----ccccccccCCCcEEeCCCCcC--C-cccccc-------ccccCcCcEEEecCCCCC
Q 001277 570 AGSMNDLSELFLDRTTIEE-----LPLSIQHLTGLVLLNLKDCKN--L-KSLSHT-------LRRLQCLKNLTLSGCSKL 634 (1109)
Q Consensus 570 ~~~~~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~L~~~~~--l-~~lp~~-------l~~l~~L~~L~L~~~~~~ 634 (1109)
+..+++|++|+|+++.+.. ++..+..+++|++|+|++|.. + ..+|.. +..+++|++|+|++|...
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4455667777777776663 344566788888888887631 1 133433 367788888888888766
Q ss_pred C----cccccccCCCCCcEEeccCccCcc-----cCCcccCC---------CCCcEEeeeccCCC-cccC---CCCCCCC
Q 001277 635 K----KFPESLGSMKDLMELFLDGTSIAE-----VPSSIELL---------TGLQLLNLNNCSNL-VRLP---SCINGLR 692 (1109)
Q Consensus 635 ~----~~p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l---------~~L~~L~L~~c~~l-~~lp---~~i~~l~ 692 (1109)
. .+|..+..+++|++|+|++|.+.. ++..+..+ ++|++|+|++|... ..+| ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 477778888888899888888863 33334444 88999999988754 3444 3456788
Q ss_pred CCcEEEecCCCCCc-----ccCcccCCCCCccEEecCCCcc-----cCCCccccccCCCcEEEccCCCCCCCCCCccccc
Q 001277 693 SLKTLNLSGCSKLQ-----NVPETLGQVESLEELDISGTAI-----RRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHF 762 (1109)
Q Consensus 693 ~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~L~~~~i-----~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~ 762 (1109)
+|++|++++|.... .+|..+..+++|+.|+|++|.+ ..+|..+..+++|+.|+|++|.....
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~-------- 259 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-------- 259 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH--------
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh--------
Confidence 99999999987542 2344778889999999999998 44577888899999999999864321
Q ss_pred ccccccccCCCccccCCCC--CCCCCCCEEecCCCCCCCC---Cccccc-CCCCCCCEEeCCCCCCcccch---hh-hcc
Q 001277 763 PFNLMGQRSYPVALMLPSL--SGLHSLSKLDLSDCGLGEG---AIPNDI-GNLCSLKQLNLSQNNFVTLPA---SI-NSL 832 (1109)
Q Consensus 763 ~~~~l~~~~~~~~~l~~~l--~~l~~L~~L~Ls~~~l~~~---~lp~~l-~~l~~L~~L~Ls~n~l~~lp~---~~-~~l 832 (1109)
....++..+ +.+++|++|+|++|.+... .+|..+ .++++|++|+|++|.++.... .+ ..+
T Consensus 260 ----------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 260 ----------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp ----------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred ----------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence 001123344 4488999999999998431 377777 668999999999999986542 22 334
Q ss_pred CCCCceecc
Q 001277 833 FNLGQLDLE 841 (1109)
Q Consensus 833 ~~L~~L~L~ 841 (1109)
++++.+++.
T Consensus 330 ~~~~~~~l~ 338 (386)
T 2ca6_A 330 STRGRGELD 338 (386)
T ss_dssp HHHTCCEEC
T ss_pred hhcCcchhh
Confidence 555555553
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=176.52 Aligned_cols=201 Identities=20% Similarity=0.191 Sum_probs=163.9
Q ss_pred CCCcceEEEecCCCCCCccccccc--CCcCCcceeeccccCCccc-c----ccccccCCCcEEeCCCCcCCccccccccc
Q 001277 547 SMKSLKTLVLSGCLKLTKKCLEFA--GSMNDLSELFLDRTTIEEL-P----LSIQHLTGLVLLNLKDCKNLKSLSHTLRR 619 (1109)
Q Consensus 547 ~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~L~~L~L~~~~l~~l-~----~~~~~l~~L~~L~L~~~~~l~~lp~~l~~ 619 (1109)
.+++|++|++++|. +....|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|......|..++.
T Consensus 89 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 34669999999997 666556655 7889999999999998852 2 23457999999999998876666678889
Q ss_pred cCcCcEEEecCCCCCCc--c--cccccCCCCCcEEeccCccCcccCCc----ccCCCCCcEEeeeccCCCcccCCCCCCC
Q 001277 620 LQCLKNLTLSGCSKLKK--F--PESLGSMKDLMELFLDGTSIAEVPSS----IELLTGLQLLNLNNCSNLVRLPSCINGL 691 (1109)
Q Consensus 620 l~~L~~L~L~~~~~~~~--~--p~~l~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~c~~l~~lp~~i~~l 691 (1109)
+++|++|+|++|..... + +..++.+++|++|+|++|.+..++.. ++.+++|++|+|++|......|..+..+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 99999999999976542 3 23347899999999999999876652 5788999999999988777668777776
Q ss_pred ---CCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCC
Q 001277 692 ---RSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGP 752 (1109)
Q Consensus 692 ---~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~ 752 (1109)
++|++|+|++|... .+|..+. ++|+.|+|++|.++++|. +..+++|+.|++++|...
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 69999999998755 7887775 799999999999999865 678899999999998753
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=1.4e-15 Score=164.65 Aligned_cols=173 Identities=21% Similarity=0.249 Sum_probs=98.5
Q ss_pred CcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCC
Q 001277 647 LMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGT 726 (1109)
Q Consensus 647 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 726 (1109)
.++++++++.+..+|..+. ++|+.|+|++|......+..+.++++|++|+|++|......+..+..+++|++|+|++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3445555555555555443 45566666655544444445555666666666665554444445566666666666666
Q ss_pred cccCCC-ccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccc
Q 001277 727 AIRRPP-SSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPND 805 (1109)
Q Consensus 727 ~i~~~p-~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~ 805 (1109)
.++.+| ..+..+++|++|+|++|...... +..+..+++|++|+|++|.+. +..+..
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 150 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLP----------------------SGVFDRLTKLKELRLNTNQLQ-SIPAGA 150 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcC----------------------hhHhccCCcccEEECcCCcCC-ccCHHH
Confidence 666654 33455666666666665432210 122455666777777776663 222335
Q ss_pred cCCCCCCCEEeCCCCCCcccch-hhhccCCCCceeccCCc
Q 001277 806 IGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLEDCK 844 (1109)
Q Consensus 806 l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~c~ 844 (1109)
++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 6666777777777777666654 45666666666666664
No 102
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=5.5e-18 Score=208.25 Aligned_cols=296 Identities=14% Similarity=0.003 Sum_probs=161.5
Q ss_pred CCCcceEEEecCCCCCCcc----cccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCC---ccccccccc
Q 001277 547 SMKSLKTLVLSGCLKLTKK----CLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNL---KSLSHTLRR 619 (1109)
Q Consensus 547 ~l~~L~~L~l~~~~~l~~~----~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l---~~lp~~l~~ 619 (1109)
.+++|++|+++++. ++.. .+.....+++|+.|++.++.+..++..+..+++|+.|+++.+... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 46677777777765 4311 123344567777777777777777777777777777777643222 122233445
Q ss_pred cCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcc--cCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEE
Q 001277 620 LQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAE--VPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTL 697 (1109)
Q Consensus 620 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 697 (1109)
+++|+.|+++++ ....+|..+..+++|++|+|++|.+.. ++..+..+++|+.|++.++.....++.....+++|++|
T Consensus 269 ~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 556666666553 334455555566666666666655432 22224555666666665332222222222345555555
Q ss_pred EecC----------CCCCcc--cCcccCCCCCccEEecCCCcccCC-Cccccc-cCCCcEEEccCCC---CCCCCCC---
Q 001277 698 NLSG----------CSKLQN--VPETLGQVESLEELDISGTAIRRP-PSSIFV-MNNLKTLSFSGCN---GPPSSTS--- 757 (1109)
Q Consensus 698 ~Ls~----------c~~l~~--lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~-l~~L~~L~L~~c~---~~~~~~~--- 757 (1109)
++++ |..+.. ++.....+++|++|+++.+.+++. +..+.. +++|+.|++++|. ..+..+.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 5552 333321 112223345555555544444432 222222 4555555554321 1111000
Q ss_pred ----cccccccccccccC----CCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc--ccch
Q 001277 758 ----WHWHFPFNLMGQRS----YPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV--TLPA 827 (1109)
Q Consensus 758 ----~~~~~~~~~l~~~~----~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~ 827 (1109)
......+..+.... .....+......+++|+.|+|++|++++..++..+..+++|++|+|++|.++ .++.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 00011122222110 0001111112347899999999999866567777788999999999999987 3666
Q ss_pred hhhccCCCCceeccCCc
Q 001277 828 SINSLFNLGQLDLEDCK 844 (1109)
Q Consensus 828 ~~~~l~~L~~L~L~~c~ 844 (1109)
.+..+++|+.|+|++|+
T Consensus 508 ~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHCSSCCEEEEESCB
T ss_pred HHHhcCccCeeECcCCc
Confidence 67889999999999998
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=6.3e-18 Score=193.78 Aligned_cols=252 Identities=15% Similarity=0.112 Sum_probs=120.5
Q ss_pred EEecCCCCCCcccccccCCcCCcceeeccccCCcccc-----ccccccC-CCcEEeCCCCcCCcccccccccc-----Cc
Q 001277 554 LVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELP-----LSIQHLT-GLVLLNLKDCKNLKSLSHTLRRL-----QC 622 (1109)
Q Consensus 554 L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~-----~~~~~l~-~L~~L~L~~~~~l~~lp~~l~~l-----~~ 622 (1109)
+.++.+. +....|.+....++|++|+++++.+...+ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCT-TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccc-chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3455554 55444555555666777777766666554 3455565 66666666664433334334443 66
Q ss_pred CcEEEecCCCCCCccccc----ccCC-CCCcEEeccCccCcccCC-c----ccC-CCCCcEEeeeccCCCcccCCCCCCC
Q 001277 623 LKNLTLSGCSKLKKFPES----LGSM-KDLMELFLDGTSIAEVPS-S----IEL-LTGLQLLNLNNCSNLVRLPSCINGL 691 (1109)
Q Consensus 623 L~~L~L~~~~~~~~~p~~----l~~l-~~L~~L~L~~~~i~~lp~-~----i~~-l~~L~~L~L~~c~~l~~lp~~i~~l 691 (1109)
|++|+|++|......+.. +..+ ++|++|+|++|.+...+. . +.. .++|++|+|++|......+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------ 155 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------ 155 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------
Confidence 666666666544333332 2223 556666666655554332 1 112 1344455544443221100
Q ss_pred CCCcEEEecCCCCCcccCcccCCCC-CccEEecCCCcccCCCc-----ccccc-CCCcEEEccCCCCCCCCCCccccccc
Q 001277 692 RSLKTLNLSGCSKLQNVPETLGQVE-SLEELDISGTAIRRPPS-----SIFVM-NNLKTLSFSGCNGPPSSTSWHWHFPF 764 (1109)
Q Consensus 692 ~~L~~L~Ls~c~~l~~lp~~l~~l~-~L~~L~L~~~~i~~~p~-----~l~~l-~~L~~L~L~~c~~~~~~~~~~~~~~~ 764 (1109)
..++..+..++ +|++|+|++|.++.... .+..+ ++|+.|+|++|.....
T Consensus 156 --------------~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~---------- 211 (362)
T 3goz_A 156 --------------DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK---------- 211 (362)
T ss_dssp --------------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----------
T ss_pred --------------HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh----------
Confidence 12222233333 55555555555544321 22223 3555555555542210
Q ss_pred ccccccCCCccccCCCCCC-CCCCCEEecCCCCCCCCC---cccccCCCCCCCEEeCCCCCCc--------ccchhhhcc
Q 001277 765 NLMGQRSYPVALMLPSLSG-LHSLSKLDLSDCGLGEGA---IPNDIGNLCSLKQLNLSQNNFV--------TLPASINSL 832 (1109)
Q Consensus 765 ~~l~~~~~~~~~l~~~l~~-l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~Ls~n~l~--------~lp~~~~~l 832 (1109)
....++..+.. .++|++|+|++|.+.... +...+..+++|+.|+|++|.+. .++..+..+
T Consensus 212 --------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l 283 (362)
T 3goz_A 212 --------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283 (362)
T ss_dssp --------CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred --------HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence 00111222222 235666666666664321 1233455666666666666533 233344556
Q ss_pred CCCCceeccCCc
Q 001277 833 FNLGQLDLEDCK 844 (1109)
Q Consensus 833 ~~L~~L~L~~c~ 844 (1109)
++|+.|++++|+
T Consensus 284 ~~L~~LdL~~N~ 295 (362)
T 3goz_A 284 QKIILVDKNGKE 295 (362)
T ss_dssp CEEEEECTTSCB
T ss_pred CceEEEecCCCc
Confidence 666666666665
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=9.6e-18 Score=192.26 Aligned_cols=180 Identities=18% Similarity=0.163 Sum_probs=113.2
Q ss_pred CCCcEEeeeccCCCcccCCC----CCCC-CCCcEEEecCCCCCcccCcc----cCC-CCCccEEecCCCcccCC-----C
Q 001277 668 TGLQLLNLNNCSNLVRLPSC----INGL-RSLKTLNLSGCSKLQNVPET----LGQ-VESLEELDISGTAIRRP-----P 732 (1109)
Q Consensus 668 ~~L~~L~L~~c~~l~~lp~~----i~~l-~~L~~L~Ls~c~~l~~lp~~----l~~-l~~L~~L~L~~~~i~~~-----p 732 (1109)
++|++|+|++|......+.. +..+ ++|++|+|++|......+.. +.. .++|++|+|++|.++.. +
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 55555555555433222221 2233 56777777777643332222 334 35899999999988843 4
Q ss_pred ccccccC-CCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCC-CCCCEEecCCCCCCCCC---cccccC
Q 001277 733 SSIFVMN-NLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGL-HSLSKLDLSDCGLGEGA---IPNDIG 807 (1109)
Q Consensus 733 ~~l~~l~-~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l-~~L~~L~Ls~~~l~~~~---lp~~l~ 807 (1109)
..+..++ +|++|+|++|....... ..+...+..+ ++|++|+|++|.+.... ++..+.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~------------------~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNC------------------AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCH------------------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred HHHhcCCccccEeeecCCCCchhhH------------------HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 4455555 99999999986432210 1112234455 49999999999985422 445555
Q ss_pred C-CCCCCEEeCCCCCCcccch-----hhhccCCCCceeccCCcC-------cCcCCC---CCCCcceEeccCCc
Q 001277 808 N-LCSLKQLNLSQNNFVTLPA-----SINSLFNLGQLDLEDCKR-------LQSMPQ---LPSNLYEVQVNGCA 865 (1109)
Q Consensus 808 ~-l~~L~~L~Ls~n~l~~lp~-----~~~~l~~L~~L~L~~c~~-------L~~lp~---lp~~L~~L~~~~C~ 865 (1109)
. .++|++|+|++|.++..+. .+..+++|+.|+|++|.. +..++. -.++|+.|+++++.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 5 4599999999999986543 357789999999999971 222221 12467888887765
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=3.2e-15 Score=161.77 Aligned_cols=177 Identities=19% Similarity=0.183 Sum_probs=130.6
Q ss_pred CcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccC
Q 001277 575 DLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDG 654 (1109)
Q Consensus 575 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 654 (1109)
..+.++++++.++.+|..+. ++|+.|++++|......+..+.++++|++|+|++|......|..+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45667777777777776554 5777888877765555555677788888888888766666666778888888888888
Q ss_pred ccCcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCc
Q 001277 655 TSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS 733 (1109)
Q Consensus 655 ~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~ 733 (1109)
|.+..+|. .+..+++|++|+|++|......+..+..+++|++|+|++|......+..++.+++|+.|+|++|.++.+|.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 88887764 46778888888888875443333345778888888888886554444468888888899998888888854
Q ss_pred -cccccCCCcEEEccCCCCCC
Q 001277 734 -SIFVMNNLKTLSFSGCNGPP 753 (1109)
Q Consensus 734 -~l~~l~~L~~L~L~~c~~~~ 753 (1109)
.+..+++|+.|++++|....
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCT
T ss_pred HHHhCCCCCCEEEeeCCceeC
Confidence 67788889999998886543
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=1.2e-15 Score=182.90 Aligned_cols=192 Identities=18% Similarity=0.181 Sum_probs=108.4
Q ss_pred CCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeec
Q 001277 598 GLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNN 677 (1109)
Q Consensus 598 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 677 (1109)
+|+.|++++|. +..+|..+ +++|++|+|++|... .+| ..+++|++|+|++|.+..+|. +.. +|+.|+|++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 67777777654 44566544 366777777776433 555 445667777777777766666 443 677777766
Q ss_pred cCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCC
Q 001277 678 CSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTS 757 (1109)
Q Consensus 678 c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~ 757 (1109)
|.. ..+|. .+++|++|+|++|... .+|. .+++|+.|+|++|.++.+|. +. ++|+.|+|++|.......
T Consensus 130 N~l-~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQL-TMLPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCC-SCCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcC-CCCCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 543 33555 4566666666666533 3554 45566666666666666665 43 666666666664331100
Q ss_pred cccccccccccccCCCccccCCC-CCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc-ccchhhhcc
Q 001277 758 WHWHFPFNLMGQRSYPVALMLPS-LSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSL 832 (1109)
Q Consensus 758 ~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~~~l 832 (1109)
++.. ....+.|+.|+|++|.++. +|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus 198 -------------------~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 -------------------VPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -------------------CC--------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -------------------HHHhhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 0000 0111223666666666642 6666666666666666666665 344444443
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=3.8e-15 Score=169.68 Aligned_cols=232 Identities=18% Similarity=0.187 Sum_probs=141.0
Q ss_pred EEeCCCCcCCccccccccccCcCcEEEecCCCCCCccc-ccccCCCCCcEEeccCccCcc-cCC-cccCCCCCcEEeeec
Q 001277 601 LLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFP-ESLGSMKDLMELFLDGTSIAE-VPS-SIELLTGLQLLNLNN 677 (1109)
Q Consensus 601 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~~~i~~-lp~-~i~~l~~L~~L~L~~ 677 (1109)
.++.++ ..++.+|..+ .++|++|+|++|.. ..+| ..+.++++|++|+|++|.+.+ +|. .+.++++|..+...+
T Consensus 13 ~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQE-SKVTEIPSDL--PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEES-TTCCSCCTTC--CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecC-CCCCccCcCc--CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 444443 3566777654 35677788877643 3444 356777777777777777643 443 456677766655555
Q ss_pred cCCCccc-CCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCC-CcccCCCc-ccccc-CCCcEEEccCCCCCC
Q 001277 678 CSNLVRL-PSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISG-TAIRRPPS-SIFVM-NNLKTLSFSGCNGPP 753 (1109)
Q Consensus 678 c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~-~~i~~~p~-~l~~l-~~L~~L~L~~c~~~~ 753 (1109)
++.+..+ |..+..+++|++|++++|......+..+....++..|++.+ +.+..++. .+..+ ..|+.|++++|...
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 4555555 34566777777777777664443333444555666666644 45555543 33333 35667777766532
Q ss_pred CCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCccc-ccCCCCCCCEEeCCCCCCcccchhhhcc
Q 001277 754 SSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQNNFVTLPASINSL 832 (1109)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~~~~l 832 (1109)
.++.......+|++|++++|+.. ..+|. .++.+++|+.|+|++|+++++|.. .+
T Consensus 168 ----------------------~i~~~~f~~~~L~~l~l~~~n~l-~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~ 222 (350)
T 4ay9_X 168 ----------------------EIHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIHSLPSY--GL 222 (350)
T ss_dssp ----------------------EECTTSSTTEEEEEEECTTCTTC-CCCCTTTTTTEECCSEEECTTSCCCCCCSS--SC
T ss_pred ----------------------CCChhhccccchhHHhhccCCcc-cCCCHHHhccCcccchhhcCCCCcCccChh--hh
Confidence 22333444557788888764432 23554 467788888888888888888753 36
Q ss_pred CCCCceeccCCcCcCcCCCCC--CCcceEecc
Q 001277 833 FNLGQLDLEDCKRLQSMPQLP--SNLYEVQVN 862 (1109)
Q Consensus 833 ~~L~~L~L~~c~~L~~lp~lp--~~L~~L~~~ 862 (1109)
.+|+.|.+.+|..++.+|.+. ++|+.+++.
T Consensus 223 ~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred ccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 677777777777777777544 355555543
No 108
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=7e-15 Score=167.62 Aligned_cols=296 Identities=13% Similarity=0.101 Sum_probs=173.5
Q ss_pred cCCcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhc--ccCCh
Q 001277 178 RTKPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSE--KEGSV 255 (1109)
Q Consensus 178 ~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~--~~~~~ 255 (1109)
+.++..+..||||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+ ++..... ...+.
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~-~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILI-DCRELYAERGHITR 74 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEE-EHHHHHHTTTCBCH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEE-EeecccccccCCCH
Confidence 345566788999999999999988642 7899999999999999999988651 3444 3333210 01113
Q ss_pred HHHHHHHHHHHhh---------------ccCcc--cccccccHHHHHHHHcC-CCCceEeccCCCHH--------H-HHH
Q 001277 256 VSLQKQLLSDLLK---------------LADIS--IWNVDDGINIIGSRLRQ-KKVLLVIDDVADVE--------Q-LQN 308 (1109)
Q Consensus 256 ~~l~~~ll~~l~~---------------~~~~~--~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~~--------~-~~~ 308 (1109)
..+...+...+.. ..... ..+..+....+.+.... ++++|||||++... + +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 3333333332211 00000 01223334444444432 49999999996632 2 333
Q ss_pred HHhcCCCCCCCcEEEEEeCCchhhHhh----C----C--CccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 001277 309 LARKRDWFGPGSKIVITTRDKQLLVAH----E----V--DEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRV 378 (1109)
Q Consensus 309 l~~~~~~~~~gs~IiiTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i 378 (1109)
+...... .++.++|+|++...+.... . . .....+++.+|+.+|+.+++...+-..... ...+.+.++
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEA 231 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Confidence 3222111 2578999999876532211 1 1 111379999999999999998754222111 123567899
Q ss_pred HHHhCCCchhHHHHhhhcCC-CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCC---cHHHHHHhhhhhcccCCCCHHHHH
Q 001277 379 LKYAGGLPLALTVLGSFLNG-RSVDLWRSTLKRLKKEPPNRIINILQISFDGL---QDLEKKIFLDVACFFKSWDRDHVE 454 (1109)
Q Consensus 379 ~~~~~GlPLal~~l~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l~ 454 (1109)
++.++|+|+++..++..+.. .+...+. ..+.. .+...+...+..+ ++..+.++..+|+ ...+...+.
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHH---HHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999998865421 2222221 11110 1111121122223 6888999999988 334555665
Q ss_pred HHHHhC--CCCc---ccchHHhhhccCeeEeCCCeE-ehhHHHHHHhH
Q 001277 455 KILEGC--GFSP---VIGIEVLIEKSLLTVDDGNRL-WMHDLLQELGH 496 (1109)
Q Consensus 455 ~~~~~~--~~~~---~~~l~~L~~~sLi~~~~~~~~-~mHdlv~~~~~ 496 (1109)
..+... +... ...++.|.+.++|... ++.| ..|++++++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 554321 2222 3458899999999876 3455 45888887653
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=4.1e-18 Score=209.48 Aligned_cols=320 Identities=16% Similarity=0.167 Sum_probs=171.9
Q ss_pred EEEEccCCCCCCCC--CCCCC-CCCcceEEEecCCCCCCccc----ccccCCcCCcceeeccccC--Cc--ccccccccc
Q 001277 528 LVILNLKDCTSLTT--LPGKI-SMKSLKTLVLSGCLKLTKKC----LEFAGSMNDLSELFLDRTT--IE--ELPLSIQHL 596 (1109)
Q Consensus 528 ~~~l~l~~~~~l~~--l~~~~-~l~~L~~L~l~~~~~l~~~~----~~~~~~~~~L~~L~L~~~~--l~--~l~~~~~~l 596 (1109)
...|+++.|..+.. ++... .+++|++|++++|. ++... +.+...+++|++|+++++. +. .++..+..+
T Consensus 132 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 34555555543322 22222 56777777777775 44322 2233355677777777664 21 222233456
Q ss_pred CCCcEEeCCCCcCCccccccccccCcCcEEEecCCCC-------------------C-----------CcccccccCCCC
Q 001277 597 TGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSK-------------------L-----------KKFPESLGSMKD 646 (1109)
Q Consensus 597 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~-------------------~-----------~~~p~~l~~l~~ 646 (1109)
++|++|++++|..+..+|..+.++++|++|++++|.. + ..++..+..+++
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~ 290 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTT
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCC
Confidence 7777888777766666666666777777777554421 0 112222234455
Q ss_pred CcEEeccCccCcc--cCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCC--------CCCcc--cCcccCC
Q 001277 647 LMELFLDGTSIAE--VPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGC--------SKLQN--VPETLGQ 714 (1109)
Q Consensus 647 L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c--------~~l~~--lp~~l~~ 714 (1109)
|++|+|++|.+.. ++..+..+++|+.|++.+|.....++.....+++|++|++++| ..+.. +......
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~ 370 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh
Confidence 5555555555432 2222345555666665555111111211223555666666332 11111 0011122
Q ss_pred CCCccEEecCCCcccCC-Ccccc-ccCCCcEEEcc-----CCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCC
Q 001277 715 VESLEELDISGTAIRRP-PSSIF-VMNNLKTLSFS-----GCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSL 787 (1109)
Q Consensus 715 l~~L~~L~L~~~~i~~~-p~~l~-~l~~L~~L~L~-----~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L 787 (1109)
+++|+.|.++.+.++.. +..+. .+++|+.|+++ +|...+..+. ...++..+.++++|
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~----------------~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL----------------DIGFGAIVEHCKDL 434 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT----------------HHHHHHHHHHCTTC
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch----------------hhHHHHHHhhCCCc
Confidence 45566665555555432 12222 35667777766 2222211100 01112225567899
Q ss_pred CEEecCCCCCCCCCcccccCC-CCCCCEEeCCCCCCcc--cchhhhccCCCCceeccCCcCcCc----CCCCCCCcceEe
Q 001277 788 SKLDLSDCGLGEGAIPNDIGN-LCSLKQLNLSQNNFVT--LPASINSLFNLGQLDLEDCKRLQS----MPQLPSNLYEVQ 860 (1109)
Q Consensus 788 ~~L~Ls~~~l~~~~lp~~l~~-l~~L~~L~Ls~n~l~~--lp~~~~~l~~L~~L~L~~c~~L~~----lp~lp~~L~~L~ 860 (1109)
+.|+|++ ++++..+ ..++. +++|+.|+|++|.++. ++.-...+++|+.|+|++|+.... +..-.++|+.|+
T Consensus 435 ~~L~L~~-~l~~~~~-~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVF-EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CEEECCS-SCCHHHH-HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred cEEeecC-cccHHHH-HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 9999977 5543333 33443 8999999999999873 333337799999999999986221 112236899999
Q ss_pred ccCCcc
Q 001277 861 VNGCAS 866 (1109)
Q Consensus 861 ~~~C~~ 866 (1109)
+++|+.
T Consensus 513 l~~~~~ 518 (594)
T 2p1m_B 513 MSSCSV 518 (594)
T ss_dssp EESSCC
T ss_pred eeCCCC
Confidence 999974
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=4.8e-15 Score=163.99 Aligned_cols=149 Identities=24% Similarity=0.318 Sum_probs=95.4
Q ss_pred ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcE
Q 001277 664 IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKT 743 (1109)
Q Consensus 664 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~ 743 (1109)
+..+++|+.|++++|... .++. +.++++|++|++++|.. ..++ .+..+++|++|++++|.++.+ ..+..+++|+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~ 138 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLES 138 (291)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCE
T ss_pred HhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEECCCCcCCCC-hhhcCCCCCCE
Confidence 444444444444444322 2222 44555555555555542 2233 256666677777777776665 34666777777
Q ss_pred EEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCc
Q 001277 744 LSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 744 L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~ 823 (1109)
|++++|..... +.+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|.++
T Consensus 139 L~l~~n~l~~~------------------------~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 139 LYLGNNKITDI------------------------TVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECCSSCCCCC------------------------GGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC
T ss_pred EEccCCcCCcc------------------------hhhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCC
Confidence 77777653321 235667788888888888843 433 888889999999999888
Q ss_pred ccchhhhccCCCCceeccCCcC
Q 001277 824 TLPASINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 824 ~lp~~~~~l~~L~~L~L~~c~~ 845 (1109)
.+|. +..+++|+.|++++|+.
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEEEE
T ss_pred CChh-hccCCCCCEEECcCCcc
Confidence 8874 78888899999888754
No 111
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=1.5e-17 Score=204.43 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=26.5
Q ss_pred cCcccCCCCCccEEecCCCcccCC--CccccccCCCcEEEccCC
Q 001277 708 VPETLGQVESLEELDISGTAIRRP--PSSIFVMNNLKTLSFSGC 749 (1109)
Q Consensus 708 lp~~l~~l~~L~~L~L~~~~i~~~--p~~l~~l~~L~~L~L~~c 749 (1109)
++..+..+++|++|+|++|.+... +..+..+++|+.|++++|
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 444444567777777777775532 233456777778877766
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=3.3e-15 Score=181.21 Aligned_cols=193 Identities=21% Similarity=0.334 Sum_probs=133.1
Q ss_pred CCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeee
Q 001277 597 TGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLN 676 (1109)
Q Consensus 597 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 676 (1109)
.++..+++..+. +..+.. +..+++|+.|++++|. +..+| .+..+++|+.|+|++|.+..++. +..+++|+.|+|+
T Consensus 21 ~~l~~l~l~~~~-i~~~~~-~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKS-VTDAVT-QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSC-TTSEEC-HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHhccCCC-cccccc-hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 344455565533 333333 5678888899888875 33444 47788888888888888888776 7888888888888
Q ss_pred ccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCC
Q 001277 677 NCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSST 756 (1109)
Q Consensus 677 ~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~ 756 (1109)
+|.. ..+| .+..+++|++|+|++|.... + ..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.....
T Consensus 96 ~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~-- 168 (605)
T 1m9s_A 96 ENKI-KDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-- 168 (605)
T ss_dssp SSCC-CCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC--
T ss_pred CCCC-CCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc--
Confidence 8753 3444 57778888888888876443 3 3467777888888888877776 5677777777777777653321
Q ss_pred CcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccc
Q 001277 757 SWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP 826 (1109)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp 826 (1109)
++ +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+...|
T Consensus 169 ---------------------~~-l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 ---------------------VP-LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ---------------------GG-GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred ---------------------hh-hccCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 12 5667777777777777743 43 4677777777777777776554
No 113
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=1.1e-14 Score=166.52 Aligned_cols=296 Identities=17% Similarity=0.189 Sum_probs=169.3
Q ss_pred cCCcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhh-cccCChH
Q 001277 178 RTKPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKS-EKEGSVV 256 (1109)
Q Consensus 178 ~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ 256 (1109)
+.++..+..||||+.+++.|.. +.. +++.|+|++|+|||||+++++++.... .+|+. ..... ....+..
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHH
Confidence 3455567889999999999999 753 699999999999999999999876532 34443 33210 0000122
Q ss_pred HHHHHHHHHHh-------------hcc-Cccc----cc------ccccHHHHHHHHcC---CCCceEeccCCCHH-----
Q 001277 257 SLQKQLLSDLL-------------KLA-DISI----WN------VDDGINIIGSRLRQ---KKVLLVIDDVADVE----- 304 (1109)
Q Consensus 257 ~l~~~ll~~l~-------------~~~-~~~~----~~------~~~~~~~l~~~L~~---k~~LlVLDdv~~~~----- 304 (1109)
.....+...+. ... +... .+ .......+.+.+.. ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 22222222211 000 0000 00 01223334444432 48999999996532
Q ss_pred H-HHHHHhcCCCCCCCcEEEEEeCCchhhHhh--------CCC-c-cceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHH
Q 001277 305 Q-LQNLARKRDWFGPGSKIVITTRDKQLLVAH--------EVD-E-EHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVE 373 (1109)
Q Consensus 305 ~-~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--------~~~-~-~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~ 373 (1109)
+ +..+..... ..++.++|+|+|........ ... . ...+++.+|+.+|+.+++...+.......+..
T Consensus 156 ~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-- 232 (357)
T 2fna_A 156 NLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-- 232 (357)
T ss_dssp CCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--
T ss_pred hHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--
Confidence 1 222211111 12468999999986532211 011 1 13799999999999999987542211112221
Q ss_pred HHHHHHHHhCCCchhHHHHhhhcCC-CCHHHHHHH-HHHhhcCCCChhHHHHH-hhh--cCCcHHHHHHhhhhhcccCCC
Q 001277 374 LSKRVLKYAGGLPLALTVLGSFLNG-RSVDLWRST-LKRLKKEPPNRIINILQ-ISF--DGLQDLEKKIFLDVACFFKSW 448 (1109)
Q Consensus 374 ~~~~i~~~~~GlPLal~~l~~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~L~-~sy--~~L~~~~k~~fl~~a~f~~~~ 448 (1109)
..|++.++|+|+++..++..+.. .+...|... .+... ..+...+. ..+ ..|++..+.++..+|+ . .
T Consensus 233 --~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~- 303 (357)
T 2fna_A 233 --EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G- 303 (357)
T ss_dssp --HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-
T ss_pred --HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-
Confidence 78999999999999999876532 233333221 11110 01111222 111 1688999999999998 3 3
Q ss_pred CHHHHHHHHH-hCC--CC---cccchHHhhhccCeeEeCCCeEehhHHHHHHh
Q 001277 449 DRDHVEKILE-GCG--FS---PVIGIEVLIEKSLLTVDDGNRLWMHDLLQELG 495 (1109)
Q Consensus 449 ~~~~l~~~~~-~~~--~~---~~~~l~~L~~~sLi~~~~~~~~~mHdlv~~~~ 495 (1109)
+...+...+. ..| .. ....++.|.+.++|...++.+...|++++++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 5555554332 223 22 13458899999999876433344689988764
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=2.4e-14 Score=171.61 Aligned_cols=178 Identities=21% Similarity=0.249 Sum_probs=146.0
Q ss_pred cceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEec
Q 001277 550 SLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLS 629 (1109)
Q Consensus 550 ~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 629 (1109)
+|+.|++++|. ++.+ |..+ +++|++|++++|.++.+| ..+++|++|++++|. +..+|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~-L~~l-p~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSL-PDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSC-CSCC-CSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCC-CCcc-CHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 68899999887 7776 5433 367999999999999988 558999999999984 555887 655 99999999
Q ss_pred CCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccC
Q 001277 630 GCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVP 709 (1109)
Q Consensus 630 ~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 709 (1109)
+|.... +|. .+++|++|+|++|.+..+|. .+++|+.|+|++|.. ..+|. +. ++|++|+|++|. +..+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N~-L~~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTNL-LESLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSSC-CSSCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCCC-CCchh
Confidence 986544 777 68899999999999999887 578999999999764 45887 65 899999999986 44777
Q ss_pred cccCCCCCc-------cEEecCCCcccCCCccccccCCCcEEEccCCCCCC
Q 001277 710 ETLGQVESL-------EELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPP 753 (1109)
Q Consensus 710 ~~l~~l~~L-------~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~ 753 (1109)
. +.. +| +.|+|++|.++.+|..+..+++|+.|+|++|....
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred h-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 7 554 67 99999999999999999999999999999987543
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=3.2e-17 Score=197.86 Aligned_cols=216 Identities=18% Similarity=0.141 Sum_probs=144.0
Q ss_pred CCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEE
Q 001277 571 GSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMEL 650 (1109)
Q Consensus 571 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 650 (1109)
...++|+.|+|+.+.++.+|..++++++|+.|++++|..+..+|..+. .+......|..++++++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhcccC
Confidence 456678888888888888888888888888888876543333322111 112233455566666666666
Q ss_pred e-ccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCccc
Q 001277 651 F-LDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIR 729 (1109)
Q Consensus 651 ~-L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 729 (1109)
+ ++.+.+. +|..+.+.+|. +..+|. ..|+.|+|++|. +..+|. ++.+++|+.|+|++|.++
T Consensus 415 ~~l~~n~~~----------~L~~l~l~~n~-i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 415 DPMRAAYLD----------DLRSKFLLENS-VLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp CGGGHHHHH----------HHHHHHHHHHH-HHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC
T ss_pred cchhhcccc----------hhhhhhhhccc-ccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc
Confidence 5 4443332 22233333322 222221 136777777765 344665 777888888888888888
Q ss_pred CCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCc-ccccCC
Q 001277 730 RPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAI-PNDIGN 808 (1109)
Q Consensus 730 ~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~l-p~~l~~ 808 (1109)
.+|..++.+++|+.|+|++|.... +| .++.+++|+.|+|++|.+.. .. |..++.
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~-----------------------lp-~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~ 531 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN-----------------------VD-GVANLPRLQELLLCNNRLQQ-SAAIQPLVS 531 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-----------------------CG-GGTTCSSCCEEECCSSCCCS-SSTTGGGGG
T ss_pred ccchhhhcCCCCCEEECCCCCCCC-----------------------Cc-ccCCCCCCcEEECCCCCCCC-CCCcHHHhc
Confidence 888888888888888888775432 23 57778889999999998843 33 888999
Q ss_pred CCCCCEEeCCCCCCcccchh----hhccCCCCceec
Q 001277 809 LCSLKQLNLSQNNFVTLPAS----INSLFNLGQLDL 840 (1109)
Q Consensus 809 l~~L~~L~Ls~n~l~~lp~~----~~~l~~L~~L~L 840 (1109)
+++|+.|+|++|.++.+|.. +..+++|+.|++
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999877653 345788888764
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=7.8e-15 Score=177.99 Aligned_cols=171 Identities=22% Similarity=0.290 Sum_probs=90.2
Q ss_pred cccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEE
Q 001277 594 QHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLL 673 (1109)
Q Consensus 594 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 673 (1109)
..|++|+.|++++|. +..+|. +..+++|++|+|++|.... ++. +..+++|+.|+|++|.+..+| .+..+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 344555555555442 333442 4555555555555543322 222 455555555555555555544 35555555556
Q ss_pred eeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCC
Q 001277 674 NLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPP 753 (1109)
Q Consensus 674 ~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~ 753 (1109)
+|++|... .++ .+..+++|+.|+|++|.... + ..++.+++|+.|+|++|.+.+++. +..+++|+.|+|++|....
T Consensus 115 ~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 115 SLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp ECTTSCCC-CCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred EecCCCCC-CCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC
Confidence 55554432 222 24555666666666654332 2 345566666666666666666544 5666666666666654321
Q ss_pred CCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCC
Q 001277 754 SSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLG 798 (1109)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~ 798 (1109)
.+.+..+++|+.|+|++|.+.
T Consensus 190 ------------------------l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 190 ------------------------LRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ------------------------CGGGTTCTTCSEEECCSEEEE
T ss_pred ------------------------ChHHccCCCCCEEEccCCcCc
Confidence 122455666677777666663
No 117
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=6.6e-14 Score=163.46 Aligned_cols=286 Identities=16% Similarity=0.092 Sum_probs=169.8
Q ss_pred cccccccchhhHHHHHhhh-cc--cC--CCeeEEEE--EecCCchhHHHHHHHHHHHhcc-----ccceEEeeechhhhc
Q 001277 183 ILKELVGIDSRLEKLRFLI-AT--ES--SDVRMMGI--WGMGGLGKTTLARVAYDLISHE-----FDGSTFLANVREKSE 250 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~ 250 (1109)
.+..|+||+.++++|..++ .. .+ ...+.+.| +|++|+||||||+++++..... +...+.+.++..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 96 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN--- 96 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG---
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC---
Confidence 3478999999999999888 42 12 23456667 9999999999999999877653 233333332221
Q ss_pred ccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHc--CCCCceEeccCCCH--------HHHHHHHhcCCCC---C
Q 001277 251 KEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR--QKKVLLVIDDVADV--------EQLQNLARKRDWF---G 317 (1109)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~--------~~~~~l~~~~~~~---~ 317 (1109)
......+...++.++.........+..+....+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 97 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 97 -APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp -CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred -CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 12255677777777653211111223344556666664 67899999999764 3344433322111 2
Q ss_pred --CCcEEEEEeCCchhhHhh---------CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhC---
Q 001277 318 --PGSKIVITTRDKQLLVAH---------EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAG--- 383 (1109)
Q Consensus 318 --~gs~IiiTTR~~~v~~~~---------~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~--- 383 (1109)
....||+|||...+.... .... .+++++|+.+|++++|..++........-..+....+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~--~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGF--KLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSE--EEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCC--eeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 344588888765532111 1222 499999999999999986643211111122467788999999
Q ss_pred ---CCchhHHHHhhhc------CC---CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcccC----C
Q 001277 384 ---GLPLALTVLGSFL------NG---RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACFFK----S 447 (1109)
Q Consensus 384 ---GlPLal~~l~~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~----~ 447 (1109)
|+|..+..++... .+ .+.+.+..++..... ...+..++..||+..+.++..+|.+.. .
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 9997655544321 11 133444444433210 234555778999999999999997642 2
Q ss_pred CCHHHHHH----HH-HhCCCCc------ccchHHhhhccCeeEe
Q 001277 448 WDRDHVEK----IL-EGCGFSP------VIGIEVLIEKSLLTVD 480 (1109)
Q Consensus 448 ~~~~~l~~----~~-~~~~~~~------~~~l~~L~~~sLi~~~ 480 (1109)
+....+.. +. ...|... ...++.|.+.++|...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 33433322 22 2333221 2347889999999875
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.3e-14 Score=150.49 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=76.2
Q ss_pred cCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEec
Q 001277 573 MNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFL 652 (1109)
Q Consensus 573 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 652 (1109)
+++|++|+++++.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 344555555555555444 4455555555555554 333333 2445555555555554443334444444444444444
Q ss_pred cCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCC
Q 001277 653 DGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPP 732 (1109)
Q Consensus 653 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p 732 (1109)
++|.+. ...|..+..+++|++|++++|..++.+| .+..+++|+.|++++|.+++++
T Consensus 120 s~n~i~-----------------------~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 120 SHSAHD-----------------------DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CSSBCB-----------------------GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred cCCccC-----------------------cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 444444 3334444455555555555554344444 3555566666666666666555
Q ss_pred ccccccCCCcEEEccCCC
Q 001277 733 SSIFVMNNLKTLSFSGCN 750 (1109)
Q Consensus 733 ~~l~~l~~L~~L~L~~c~ 750 (1109)
.+..+++|+.|++++|.
T Consensus 176 -~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -TGGGCSSCCEEEECBC-
T ss_pred -HhccCCCCCEEEeeCcc
Confidence 55566666666666654
No 119
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=4.1e-14 Score=156.44 Aligned_cols=167 Identities=23% Similarity=0.308 Sum_probs=94.4
Q ss_pred cCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEec
Q 001277 573 MNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFL 652 (1109)
Q Consensus 573 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 652 (1109)
+++|+.|+++++.+..++ .+..+++|++|++++|. +..++. +.++++|++|+|++|... .+| .+..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEEC
Confidence 334444444444444443 24445555555555543 233333 555555555555554322 222 2555566666666
Q ss_pred cCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCC
Q 001277 653 DGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPP 732 (1109)
Q Consensus 653 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p 732 (1109)
++|.+..++ .+..+++|+.|++++|... .+ ..+..+++|++|++++|.... ++. +..+++|+.|++++|.++.++
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCCCCh
Confidence 666666553 3556666666666665432 23 345566777777777765433 333 667777777777777777765
Q ss_pred ccccccCCCcEEEccCCC
Q 001277 733 SSIFVMNNLKTLSFSGCN 750 (1109)
Q Consensus 733 ~~l~~l~~L~~L~L~~c~ 750 (1109)
. +..+++|+.|++++|.
T Consensus 195 ~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 195 A-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp G-GTTCTTCSEEEEEEEE
T ss_pred h-hccCCCCCEEECcCCc
Confidence 3 6777778888777764
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=5.8e-14 Score=147.10 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=59.1
Q ss_pred cCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCc-ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEec
Q 001277 622 CLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLS 700 (1109)
Q Consensus 622 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls 700 (1109)
+|++|++++|......+..+..+++|++|++++|.+..+|.. +..+++|++|++++|......+..+.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 444444444433322223344444455555555555544432 3445555555555543322222223455555555555
Q ss_pred CCCCCcccCcccCCCCCccEEecCCCcccCCCcc-ccccCCCcEEEccCC
Q 001277 701 GCSKLQNVPETLGQVESLEELDISGTAIRRPPSS-IFVMNNLKTLSFSGC 749 (1109)
Q Consensus 701 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~-l~~l~~L~~L~L~~c 749 (1109)
+|......+..+..+++|+.|+|++|.+++++.. +..+++|+.|++++|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 5543332233345555566666665555555432 344555555555544
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.4e-14 Score=157.71 Aligned_cols=166 Identities=23% Similarity=0.267 Sum_probs=110.5
Q ss_pred CCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecC
Q 001277 645 KDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDIS 724 (1109)
Q Consensus 645 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 724 (1109)
.++..++++++.+..++ .+..+++|+.|++++|. +..+| .+..+++|++|++++|.. ..++. +..+++|+.|+|+
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECC
Confidence 34444455555555555 45566666666666653 34444 455666677777766653 33444 6777777777777
Q ss_pred CCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCccc
Q 001277 725 GTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPN 804 (1109)
Q Consensus 725 ~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~ 804 (1109)
+|.++++|.... ++|+.|++++|.... .+.+..+++|+.|+|++|.+.. ++
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~------------------------~~~l~~l~~L~~L~Ls~N~i~~--~~- 144 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRD------------------------TDSLIHLKNLEILSIRNNKLKS--IV- 144 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSB------------------------SGGGTTCTTCCEEECTTSCCCB--CG-
T ss_pred CCccCCcCcccc--CcccEEEccCCccCC------------------------ChhhcCcccccEEECCCCcCCC--Ch-
Confidence 777777665333 778888887775322 1236677888888888888844 44
Q ss_pred ccCCCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcC
Q 001277 805 DIGNLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKR 845 (1109)
Q Consensus 805 ~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~ 845 (1109)
.++.+++|+.|+|++|.++.+ ..+..+++|+.|++++|+.
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 577888888888888888877 5677888888888887754
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.5e-13 Score=143.92 Aligned_cols=173 Identities=18% Similarity=0.129 Sum_probs=111.3
Q ss_pred EEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcc
Q 001277 649 ELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAI 728 (1109)
Q Consensus 649 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i 728 (1109)
.++++++.+..+|..+ .++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|+|++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4555556666666543 34667777776654433333456677777777777654433334456777777777777777
Q ss_pred cCCCcc-ccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccC
Q 001277 729 RRPPSS-IFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIG 807 (1109)
Q Consensus 729 ~~~p~~-l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~ 807 (1109)
+.+|.. +..+++|++|++++|...... +..+..+++|++|+|++|.+. +..+..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 145 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLP----------------------DGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccC----------------------HhHhccCCcCCEEECCCCccc-eeCHHHhc
Confidence 776543 567777777777776533211 223566778888888888874 33334467
Q ss_pred CCCCCCEEeCCCCCCcccchhhhccCCCCceeccCCcCcCcCCCC
Q 001277 808 NLCSLKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQL 852 (1109)
Q Consensus 808 ~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~c~~L~~lp~l 852 (1109)
.+++|+.|+|++|.+. ..+++|+.|+++.|.....+|..
T Consensus 146 ~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred cCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeecc
Confidence 7888888888888665 34567888888887777777743
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=2.8e-14 Score=148.08 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=115.7
Q ss_pred cccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEE
Q 001277 618 RRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTL 697 (1109)
Q Consensus 618 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 697 (1109)
..+++|++|++++|... .+| .+..+++|++|++++|.+..++ .+..+++|++|++++|......|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45666777777765433 455 5667777777777777666554 57888999999999987776678889999999999
Q ss_pred EecCCCCCcccCcccCCCCCccEEecCCCc-ccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCC
Q 001277 698 NLSGCSKLQNVPETLGQVESLEELDISGTA-IRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSY 772 (1109)
Q Consensus 698 ~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~-i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~ 772 (1109)
++++|......|..++.+++|++|++++|. ++.+| .+..+++|+.|++++|...... .+.....+..+...++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 999999877788889999999999999998 88887 7899999999999999865533 3444444555544443
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=2e-13 Score=144.14 Aligned_cols=151 Identities=21% Similarity=0.302 Sum_probs=92.4
Q ss_pred cEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCc
Q 001277 648 MELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTA 727 (1109)
Q Consensus 648 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 727 (1109)
+.++++++.+.++|..+. ++|+.|++++|......+..+..+++|++|+|++|......|..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 355666677777776553 567777777765444334456677777777777776655556777777777777777777
Q ss_pred ccCCCcc-ccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCccccc
Q 001277 728 IRRPPSS-IFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDI 806 (1109)
Q Consensus 728 i~~~p~~-l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l 806 (1109)
++.+|.. +..+++|+.|+|++|...... +..+.++++|+.|+|++|.+. +..+..+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 148 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLR----------------------VDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCS-CCCTTTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeC----------------------HHHcCCCCCCCEEECCCCcCC-EECHHHH
Confidence 7777543 345666666666665432211 233555566666666666653 2223345
Q ss_pred CCCCCCCEEeCCCCCCc
Q 001277 807 GNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 807 ~~l~~L~~L~Ls~n~l~ 823 (1109)
..+++|+.|+|++|.+.
T Consensus 149 ~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred hCCCCCCEEEeCCCCcC
Confidence 55666666666666554
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=3.1e-13 Score=143.69 Aligned_cols=148 Identities=24% Similarity=0.262 Sum_probs=78.0
Q ss_pred cEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCc
Q 001277 648 MELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTA 727 (1109)
Q Consensus 648 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 727 (1109)
+.++++++.+..+|..+. ++|+.|+|++|......|..+.++++|++|+|++|......+..+..+++|+.|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345555556666665432 555555555554444444444555555555555544322112233445555555555555
Q ss_pred ccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccC
Q 001277 728 IRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIG 807 (1109)
Q Consensus 728 i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~ 807 (1109)
++.++. ..+..+++|+.|+|++|.+. .+|..+.
T Consensus 100 l~~l~~---------------------------------------------~~~~~l~~L~~L~Ls~N~l~--~lp~~~~ 132 (229)
T 3e6j_A 100 LTVLPS---------------------------------------------AVFDRLVHLKELFMCCNKLT--ELPRGIE 132 (229)
T ss_dssp CCCCCT---------------------------------------------TTTTTCTTCCEEECCSSCCC--SCCTTGG
T ss_pred CCccCh---------------------------------------------hHhCcchhhCeEeccCCccc--ccCcccc
Confidence 444432 22345556666666666653 3565666
Q ss_pred CCCCCCEEeCCCCCCcccch-hhhccCCCCceeccCCc
Q 001277 808 NLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLEDCK 844 (1109)
Q Consensus 808 ~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~c~ 844 (1109)
.+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 66666666666666666553 35556666666666654
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=2.2e-13 Score=155.75 Aligned_cols=170 Identities=22% Similarity=0.196 Sum_probs=91.9
Q ss_pred EEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCC-CCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCc
Q 001277 649 ELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCIN-GLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTA 727 (1109)
Q Consensus 649 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 727 (1109)
.++++++.+..+|..+. ..|+.|+|++|......+..+. ++++|++|+|++|......+..+..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 34444444444444332 2345555555433222222233 55555555555554433333445556666666666666
Q ss_pred ccCCCc-cccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCccccc
Q 001277 728 IRRPPS-SIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDI 806 (1109)
Q Consensus 728 i~~~p~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l 806 (1109)
++.++. .+..+++|+.|+|++|..... .+..+.++++|+.|+|++|.+.. +|..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~----------------------~~~~~~~l~~L~~L~L~~N~l~~--l~~~~ 155 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVV----------------------DRNAFEDMAQLQKLYLSQNQISR--FPVEL 155 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEE----------------------CTTTTTTCTTCCEEECCSSCCCS--CCGGG
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEE----------------------CHHHhCCcccCCEEECCCCcCCe--eCHHH
Confidence 655533 455566666666666543211 13345666777777777777643 44433
Q ss_pred ----CCCCCCCEEeCCCCCCcccch-hhhccCC--CCceeccCCc
Q 001277 807 ----GNLCSLKQLNLSQNNFVTLPA-SINSLFN--LGQLDLEDCK 844 (1109)
Q Consensus 807 ----~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~--L~~L~L~~c~ 844 (1109)
..+++|+.|+|++|+|+.+|. .+..++. |+.|+|++|+
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 457777788888777777763 4556665 3667777664
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=5.4e-16 Score=187.07 Aligned_cols=105 Identities=21% Similarity=0.202 Sum_probs=93.6
Q ss_pred CccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCC
Q 001277 717 SLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCG 796 (1109)
Q Consensus 717 ~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~ 796 (1109)
.|+.|+|++|.++++|. ++.+++|+.|+|++|... .+|..++++++|+.|+|++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-----------------------~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-----------------------ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-----------------------CCCGGGGGCTTCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-----------------------ccchhhhcCCCCCEEECCCCC
Confidence 59999999999999997 999999999999998643 236678899999999999999
Q ss_pred CCCCCcccccCCCCCCCEEeCCCCCCccc--chhhhccCCCCceeccCCcCcCc
Q 001277 797 LGEGAIPNDIGNLCSLKQLNLSQNNFVTL--PASINSLFNLGQLDLEDCKRLQS 848 (1109)
Q Consensus 797 l~~~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~~~~l~~L~~L~L~~c~~L~~ 848 (1109)
++. +| .++.+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+.-..
T Consensus 498 l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 498 LEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 954 78 899999999999999999988 89999999999999999975433
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=4e-13 Score=141.87 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=83.4
Q ss_pred ceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCcc
Q 001277 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTS 656 (1109)
Q Consensus 577 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 656 (1109)
+.++++++.++.+|..+. ++|+.|++++|......+..+..+++|++|+|++|......|..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666666666665543 566677776654333333356666677777777665555556666666666666666666
Q ss_pred CcccCCc-ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcc
Q 001277 657 IAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAI 728 (1109)
Q Consensus 657 i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i 728 (1109)
+..+|.. +..+++|+.|+|++|......|..+..+++|++|+|++|......+..+..+++|+.|+|++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 6666543 35555566666555544433344444555555555555443333333344444555555554444
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=1.5e-13 Score=149.37 Aligned_cols=168 Identities=20% Similarity=0.298 Sum_probs=138.0
Q ss_pred CcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEe
Q 001277 572 SMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELF 651 (1109)
Q Consensus 572 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 651 (1109)
.+.++..+++..+.++.++ .+..+++|++|++++| .+..+| .+..+++|++|+|++|... .+|. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEE
Confidence 3556778888888888887 6788999999999987 466777 4888999999999987544 4454 88999999999
Q ss_pred ccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCC
Q 001277 652 LDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP 731 (1109)
Q Consensus 652 L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~ 731 (1109)
|++|.+..+|.... ++|+.|++++|.. ..++ .+..+++|++|++++|.. ..++ .++.+++|+.|++++|.++++
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCCcCcccc--CcccEEEccCCcc-CCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcCcch
Confidence 99999998876444 8999999999754 4454 478899999999999874 4454 688899999999999999988
Q ss_pred CccccccCCCcEEEccCCCC
Q 001277 732 PSSIFVMNNLKTLSFSGCNG 751 (1109)
Q Consensus 732 p~~l~~l~~L~~L~L~~c~~ 751 (1109)
..+..+++|+.|++++|..
T Consensus 166 -~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCcc
Confidence 6788899999999998863
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.9e-13 Score=141.14 Aligned_cols=150 Identities=21% Similarity=0.206 Sum_probs=83.6
Q ss_pred EEeccCccCcccCCcccCCCCCcEEeeeccCCCcccC-CCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCc
Q 001277 649 ELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLP-SCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTA 727 (1109)
Q Consensus 649 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 727 (1109)
.++++++.+..+|..+. ..++.|+|++|......| ..+.++++|++|+|++|......+..+..+++|++|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 45555556666655442 234566666554332222 224556666666666665444334456666666666666666
Q ss_pred ccCCCc-cccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCccccc
Q 001277 728 IRRPPS-SIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDI 806 (1109)
Q Consensus 728 i~~~p~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l 806 (1109)
++.++. .+..+++|++|+|++|..... .+..+.++++|+.|+|++|.+. +..|..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 149 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCV----------------------GNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCB----------------------CTTSSTTCTTCSEEECTTSCCC-CBCTTTT
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeE----------------------CHhHcCCCccCCEEECCCCcCC-EECHHHh
Confidence 666643 355556666666665543221 1234556666677777766662 3335666
Q ss_pred CCCCCCCEEeCCCCCCc
Q 001277 807 GNLCSLKQLNLSQNNFV 823 (1109)
Q Consensus 807 ~~l~~L~~L~Ls~n~l~ 823 (1109)
..+++|+.|+|++|.+.
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 66666666666666655
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=8.7e-13 Score=139.25 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=77.2
Q ss_pred ceeeccccCCccccccccccCCCcEEeCCCCcCCcccc-ccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCc
Q 001277 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLS-HTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGT 655 (1109)
Q Consensus 577 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 655 (1109)
+.++++++.++.+|..+ ...+++|++++|......| ..+.++++|++|+|++|......+..+..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35666666666666544 2344566666654222212 23555666666666665444333445555555566666556
Q ss_pred cCcccCCc-ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCccc
Q 001277 656 SIAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIR 729 (1109)
Q Consensus 656 ~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 729 (1109)
.+..++.. +..+++|++|+|++|......|..+..+++|++|+|++|...+..|..+..+++|+.|+|++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555432 455555555555555444333444555555555555555444433444555555555555555443
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=9.8e-13 Score=139.83 Aligned_cols=123 Identities=24% Similarity=0.209 Sum_probs=50.9
Q ss_pred ceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCcc
Q 001277 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTS 656 (1109)
Q Consensus 577 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 656 (1109)
..++.+++.+..+|..+. ++|++|+|++|......|..+..+++|++|+|++|......+..+..+++|++|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 344444444555554332 445555555444333333444444445555554443322222233444444444444444
Q ss_pred CcccCCc-ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCC
Q 001277 657 IAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGC 702 (1109)
Q Consensus 657 i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 702 (1109)
+..+|.. +..+++|+.|+|++|. +..+|..+..+++|++|+|++|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS
T ss_pred CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC
Confidence 4444322 2334444444444332 2233333333344444444333
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=9.8e-12 Score=143.47 Aligned_cols=281 Identities=14% Similarity=0.079 Sum_probs=172.9
Q ss_pred ccccccchhhHHHHHhhhcc--cCCCeeEEEEEecCCchhHHHHHHHHHHHhcc------c-cceEEeeechhhhcccCC
Q 001277 184 LKELVGIDSRLEKLRFLIAT--ESSDVRMMGIWGMGGLGKTTLARVAYDLISHE------F-DGSTFLANVREKSEKEGS 254 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f-~~~~~~~~~~~~~~~~~~ 254 (1109)
+..++||+.+++++..++.. .....+.+.|+|++|+||||||+++++.+... + ...+++.+.... .+.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV---GGT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH---CSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC---CCC
Confidence 47899999999999888763 23446789999999999999999999977543 2 223333333221 112
Q ss_pred hHHHHHHHHHHHhhc-cCcccccccccHHHHHHHHcCCCCceEeccCCCHHH-------HHHHHhcCCCCCCCcEEEEEe
Q 001277 255 VVSLQKQLLSDLLKL-ADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQ-------LQNLARKRDWFGPGSKIVITT 326 (1109)
Q Consensus 255 ~~~l~~~ll~~l~~~-~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-------~~~l~~~~~~~~~gs~IiiTT 326 (1109)
...+...++.++... ..............+.+.+..++.+|||||++.... +..+.... .+.+||+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 555666666666421 111112234456677777777666999999976543 33333322 678899999
Q ss_pred CCchh----hHh--hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhC---CCch-hHHHHhhh-
Q 001277 327 RDKQL----LVA--HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAG---GLPL-ALTVLGSF- 395 (1109)
Q Consensus 327 R~~~v----~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~l~~~- 395 (1109)
+.... ... ..... .+++++++.++..+++..++...-....-..+..+.++++++ |.|. |+..+-..
T Consensus 172 ~~~~~~~~l~~~l~sr~~~--~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGP--SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCC--EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCC--eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 87532 111 12223 899999999999999998853211111112245677788887 9887 33332221
Q ss_pred -cC----CCCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcccCCCCH-HHHHHHHHhCCCCc-----
Q 001277 396 -LN----GRSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACFFKSWDR-DHVEKILEGCGFSP----- 464 (1109)
Q Consensus 396 -L~----~~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~~-~~l~~~~~~~~~~~----- 464 (1109)
+. ..+.+.+..+++... ...+..+++.|++.++.++..++....+-+. +....+....|..+
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHH
Confidence 11 246777777776653 2456677889999999888888761110111 22333344433222
Q ss_pred -ccchHHhhhccCeeEe
Q 001277 465 -VIGIEVLIEKSLLTVD 480 (1109)
Q Consensus 465 -~~~l~~L~~~sLi~~~ 480 (1109)
...+..|.++++|...
T Consensus 323 ~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 323 FSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 2336788899999864
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=6.7e-13 Score=151.70 Aligned_cols=172 Identities=20% Similarity=0.177 Sum_probs=122.1
Q ss_pred ceeeccccCCccccccccccCCCcEEeCCCCcCCcccccccc-ccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCc
Q 001277 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLR-RLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGT 655 (1109)
Q Consensus 577 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 655 (1109)
+.++++++.++.+|..+. ..++.|+|++|......+..+. ++++|++|+|++|......+..+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666776666542 4567777777643333333344 6778888888877655555567788888888888888
Q ss_pred cCcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCccc----CCCCCccEEecCCCcccC
Q 001277 656 SIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETL----GQVESLEELDISGTAIRR 730 (1109)
Q Consensus 656 ~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l----~~l~~L~~L~L~~~~i~~ 730 (1109)
.+..++. .+..+++|+.|+|++|......|..+.++++|++|+|++|... .+|..+ ..+++|+.|+|++|.++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8887765 4778888888888887766555777888888888888887644 455443 578899999999999998
Q ss_pred CCc-cccccCC--CcEEEccCCCC
Q 001277 731 PPS-SIFVMNN--LKTLSFSGCNG 751 (1109)
Q Consensus 731 ~p~-~l~~l~~--L~~L~L~~c~~ 751 (1109)
+|. .+..++. |+.|+|.+|..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCHHHhhhccHhhcceEEecCCCc
Confidence 863 5666766 48899988763
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=8.9e-14 Score=173.13 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=56.1
Q ss_pred cccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCC
Q 001277 590 PLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTG 669 (1109)
Q Consensus 590 ~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 669 (1109)
+..+..+++|+.|+|++|. +..+|..+.++++|++|+|++|... .+|..++++++|++|+|++|.|..+|..++.|++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 3444455555555555543 2244444445555555555554333 4455455555555555555555555555555555
Q ss_pred CcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCccc
Q 001277 670 LQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETL 712 (1109)
Q Consensus 670 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l 712 (1109)
|++|+|++|. +..+|..+++|++|++|+|++|...+.+|..+
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 5555555442 23444444455555555555544444444333
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=1.1e-11 Score=143.13 Aligned_cols=287 Identities=15% Similarity=0.099 Sum_probs=166.2
Q ss_pred cccccccchhhHHHHHhhhccc--CCCeeEEEEEecCCchhHHHHHHHHHHHhcccc--ceEEeeechhhhcccCChHHH
Q 001277 183 ILKELVGIDSRLEKLRFLIATE--SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD--GSTFLANVREKSEKEGSVVSL 258 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l 258 (1109)
.+..|+||+.+++.+..++... ....+.+.|+|++|+||||||+++++.....+. ..+++.+.... .. ...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~---~~-~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI---DT-PYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH---CS-HHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC---CC-HHHH
Confidence 4478999999999999988742 345678999999999999999999998876542 23333322221 11 3334
Q ss_pred HHHHHHHHhhccCcccccccccHHHHHHHHc--CCCCceEeccCCCHH------HHHHHHhcCCC-CCCCcEEEEEeCCc
Q 001277 259 QKQLLSDLLKLADISIWNVDDGINIIGSRLR--QKKVLLVIDDVADVE------QLQNLARKRDW-FGPGSKIVITTRDK 329 (1109)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~------~~~~l~~~~~~-~~~gs~IiiTTR~~ 329 (1109)
...++..+.........+..+....+.+.+. +++.+||||+++... .+..+...... ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 4444443321111111123334455555554 348999999986543 34444332211 13456778888865
Q ss_pred hhhHhhC-----CCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhC---CCchhHHHHhhhc-----
Q 001277 330 QLLVAHE-----VDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAG---GLPLALTVLGSFL----- 396 (1109)
Q Consensus 330 ~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~---GlPLal~~l~~~L----- 396 (1109)
....... .-....+++++++.++..+++..++........-..+..+.+++.++ |.|..+..+....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4322110 01113799999999999999998753211111223456677788887 9998443332221
Q ss_pred -C---CCCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcccC-CC---CHHHH----HHHHHhCCCCc
Q 001277 397 -N---GRSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACFFK-SW---DRDHV----EKILEGCGFSP 464 (1109)
Q Consensus 397 -~---~~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~-~~---~~~~l----~~~~~~~~~~~ 464 (1109)
. ..+.+.+..+++... ...+...+.+++...+.++..++.+.+ +. ....+ ..+....|..+
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~ 326 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEA 326 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCC
Confidence 1 125566666655542 245666788999999999888886433 21 22222 23333333222
Q ss_pred ------ccchHHhhhccCeeEe
Q 001277 465 ------VIGIEVLIEKSLLTVD 480 (1109)
Q Consensus 465 ------~~~l~~L~~~sLi~~~ 480 (1109)
...++.|.+.++|...
T Consensus 327 ~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 327 VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 2346778888888653
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=3.3e-11 Score=139.16 Aligned_cols=287 Identities=12% Similarity=0.070 Sum_probs=168.3
Q ss_pred cccccccchhhHHHHHhhhccc--CCCeeEEEEEecCCchhHHHHHHHHHHHhccc-----cceEEeeechhhhcccCCh
Q 001277 183 ILKELVGIDSRLEKLRFLIATE--SSDVRMMGIWGMGGLGKTTLARVAYDLISHEF-----DGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~ 255 (1109)
.+..++||+.+++++..++... ....+.+.|+|++|+||||||+++++.....+ ...+.+.+... ....
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH----RETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT----SCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc----CCCH
Confidence 3478999999999999988532 34567899999999999999999998775432 22222222221 1224
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHHc--CCCCceEeccCCCHHH-------HHHHHhcCCCC--CCCcEEEE
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR--QKKVLLVIDDVADVEQ-------LQNLARKRDWF--GPGSKIVI 324 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~~-------~~~l~~~~~~~--~~gs~Iii 324 (1109)
..+...++.++............+....+.+.+. +++.+||||+++.... +..+....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 5566667766643221111223344556666663 4578999999987542 22333322111 45667888
Q ss_pred EeCCchhh----Hhh-CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhC---CCchhH-HHHhhh
Q 001277 325 TTRDKQLL----VAH-EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAG---GLPLAL-TVLGSF 395 (1109)
Q Consensus 325 TTR~~~v~----~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~---GlPLal-~~l~~~ 395 (1109)
||+...+. ... ..-....+.+++++.++..+++..++........-..+..+.++++++ |.|..+ ..+...
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88765321 111 111113789999999999999998853210111111245677888888 999433 222211
Q ss_pred ---cC--C---CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcccCCCC---HH----HHHHHHHhC
Q 001277 396 ---LN--G---RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACFFKSWD---RD----HVEKILEGC 460 (1109)
Q Consensus 396 ---L~--~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~---~~----~l~~~~~~~ 460 (1109)
.. + .+.+.+..+++... ...+..++..|++.++..++.++....+.. .. ....+....
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 11 1 25667777666542 234566788999999999888885544332 22 222333333
Q ss_pred CCCc------ccchHHhhhccCeeEe
Q 001277 461 GFSP------VIGIEVLIEKSLLTVD 480 (1109)
Q Consensus 461 ~~~~------~~~l~~L~~~sLi~~~ 480 (1109)
+..+ ...++.|...+++...
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 326 GLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 3222 2336777888888763
No 138
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=2.2e-12 Score=129.90 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=39.5
Q ss_pred CCCcEEeccCccCc--ccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEe
Q 001277 645 KDLMELFLDGTSIA--EVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELD 722 (1109)
Q Consensus 645 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 722 (1109)
++|++|++++|.+. .+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555555555 555555555555555555554 2222 3344445555555555443333333333344444444
Q ss_pred cCCCcccC
Q 001277 723 ISGTAIRR 730 (1109)
Q Consensus 723 L~~~~i~~ 730 (1109)
|++|.++.
T Consensus 102 Ls~N~l~~ 109 (168)
T 2ell_A 102 LSGNKLKD 109 (168)
T ss_dssp CBSSSCCS
T ss_pred ccCCccCc
Confidence 44444433
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=7.4e-13 Score=164.85 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=91.0
Q ss_pred ccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccc
Q 001277 683 RLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHF 762 (1109)
Q Consensus 683 ~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~ 762 (1109)
..|..+..+++|+.|+|++|... .+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|...
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~---------- 283 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT---------- 283 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS----------
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC----------
Confidence 44555667777777777776643 6666666777777777777777777777777777777777776533
Q ss_pred ccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcc-cchhhhccC-CCCceec
Q 001277 763 PFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVT-LPASINSLF-NLGQLDL 840 (1109)
Q Consensus 763 ~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~~~~l~-~L~~L~L 840 (1109)
.+|..+.++++|++|+|++|.+. .+|..++.+++|+.|+|++|.|+. +|..+..+. .+..|+|
T Consensus 284 -------------~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l 348 (727)
T 4b8c_D 284 -------------SLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL 348 (727)
T ss_dssp -------------SCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence 13555667777888888888774 477778888888888888888774 444443321 1123556
Q ss_pred cCCcCcCcCCCCCCCcceEeccCC
Q 001277 841 EDCKRLQSMPQLPSNLYEVQVNGC 864 (1109)
Q Consensus 841 ~~c~~L~~lp~lp~~L~~L~~~~C 864 (1109)
++|.....+ |..|..|++..+
T Consensus 349 ~~N~l~~~~---p~~l~~l~l~~n 369 (727)
T 4b8c_D 349 RDNRPEIPL---PHERRFIEINTD 369 (727)
T ss_dssp HHCCCCCCC---CCC---------
T ss_pred ccCcccCcC---ccccceeEeecc
Confidence 666554333 345555555544
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=3.1e-12 Score=128.84 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=70.8
Q ss_pred cCCCcEEeCCCCcCC-ccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEe
Q 001277 596 LTGLVLLNLKDCKNL-KSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLN 674 (1109)
Q Consensus 596 l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 674 (1109)
.++|+.|++++|... ..+|..+..+++|++|+|++| .+..+ ..+..+++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n------------------------~l~~~-~~~~~l~~L~~L~ 77 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV------------------------GLISV-SNLPKLPKLKKLE 77 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS------------------------CCCCC-SSCCCCSSCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC------------------------CCCCh-hhhccCCCCCEEE
Confidence 355555666555422 245544455555555555554 44444 3444555555555
Q ss_pred eeccCCCcccCCCCCCCCCCcEEEecCCCCCcccC--cccCCCCCccEEecCCCcccCCCc----cccccCCCcEEEccC
Q 001277 675 LNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVP--ETLGQVESLEELDISGTAIRRPPS----SIFVMNNLKTLSFSG 748 (1109)
Q Consensus 675 L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~L~~~~i~~~p~----~l~~l~~L~~L~L~~ 748 (1109)
+++|.....+|..+.++++|++|++++|.. ..+| ..+..+++|+.|++++|.++..|. .+..+++|+.|++++
T Consensus 78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EESCCCCSCCCHHHHHCTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred CcCCcCchHHHHHHhhCCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 555544333444444455566666655542 3332 455666666666666666666655 566666777777666
Q ss_pred CCC
Q 001277 749 CNG 751 (1109)
Q Consensus 749 c~~ 751 (1109)
|..
T Consensus 157 n~~ 159 (168)
T 2ell_A 157 RED 159 (168)
T ss_dssp TTS
T ss_pred CCh
Confidence 653
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.4e-12 Score=126.74 Aligned_cols=128 Identities=21% Similarity=0.188 Sum_probs=83.3
Q ss_pred CCCcEEEecCCCCC-cccCcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCccccccccccccc
Q 001277 692 RSLKTLNLSGCSKL-QNVPETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQR 770 (1109)
Q Consensus 692 ~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~ 770 (1109)
++|++|++++|... +.+|..++.+++|+.|++++|.++.+ ..+..+++|++|++++|.....
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~---------------- 79 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG---------------- 79 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC----------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch----------------
Confidence 44555555555543 34555555566666666666666555 4556666666666666653321
Q ss_pred CCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch----hhhccCCCCceeccC
Q 001277 771 SYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA----SINSLFNLGQLDLED 842 (1109)
Q Consensus 771 ~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~----~~~~l~~L~~L~L~~ 842 (1109)
+|..+..+++|++|++++|.+..-..+..++.+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 80 ------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 ------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 123344567788888888887442233678888999999999998888775 678889999988863
No 142
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=3e-12 Score=126.09 Aligned_cols=127 Identities=20% Similarity=0.174 Sum_probs=91.8
Q ss_pred cCcCcEEEecCCCCC-CcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEE
Q 001277 620 LQCLKNLTLSGCSKL-KKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLN 698 (1109)
Q Consensus 620 l~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 698 (1109)
.++|++|++++|... ..+|..+..+++|++|++++|.+..+ ..++.+++|+.|++++|.....+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 356666677666544 45666666777777777777777766 5677777788888877765555666666678888888
Q ss_pred ecCCCCCcc-cCcccCCCCCccEEecCCCcccCCCc----cccccCCCcEEEcc
Q 001277 699 LSGCSKLQN-VPETLGQVESLEELDISGTAIRRPPS----SIFVMNNLKTLSFS 747 (1109)
Q Consensus 699 Ls~c~~l~~-lp~~l~~l~~L~~L~L~~~~i~~~p~----~l~~l~~L~~L~L~ 747 (1109)
+++|...+. .+..++.+++|++|++++|.+++.|. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888774431 23678888889999999988888865 67788899988875
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=9.7e-11 Score=135.33 Aligned_cols=306 Identities=16% Similarity=0.128 Sum_probs=176.0
Q ss_pred ccccccchhhHHHHHhhhcc----cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHH
Q 001277 184 LKELVGIDSRLEKLRFLIAT----ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
+..++||+.+++++..++.. .....+.+.|+|++|+||||||+++++.........+...+... ......+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI----YRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT----CCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc----CCCHHHHH
Confidence 37899999999999888864 12223489999999999999999999987654222222222211 11244555
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHHc--CCCCceEeccCCCH--HHHHHHHhcCCCCC----CCcEEEEEeCCchh
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRLR--QKKVLLVIDDVADV--EQLQNLARKRDWFG----PGSKIVITTRDKQL 331 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~--~~~~~l~~~~~~~~----~gs~IiiTTR~~~v 331 (1109)
..++..+............+....+.+.+. +++.+||||+++.. +.+..+........ .+..||+||++..+
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 666655542211111223344455555554 56889999999763 44566655443222 46788888887643
Q ss_pred hHhhC-----CCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHh---------CCCchhHHHHhhhc-
Q 001277 332 LVAHE-----VDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYA---------GGLPLALTVLGSFL- 396 (1109)
Q Consensus 332 ~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~l~~~L- 396 (1109)
..... .-....+.+++++.++..+++...+........-..+..+.+++++ +|.|..+..+....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 22110 0011269999999999999998886431111122346778889999 78876544333221
Q ss_pred --C---C---CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhccc---CC--CCHHHHHHH----HHh
Q 001277 397 --N---G---RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACFF---KS--WDRDHVEKI----LEG 459 (1109)
Q Consensus 397 --~---~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~~----~~~ 459 (1109)
. + .+.+....+...... . .+...+..|+.+.+.++..++.+. .+ .....+... ...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~---~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF---G----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC---C----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh---h----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 0 1 233444444443321 1 122335678888888888887654 22 333333332 222
Q ss_pred CCCCc------ccchHHhhhccCeeEeCC-------CeE-------ehhHHHHHHhHhhhh
Q 001277 460 CGFSP------VIGIEVLIEKSLLTVDDG-------NRL-------WMHDLLQELGHQIVQ 500 (1109)
Q Consensus 460 ~~~~~------~~~l~~L~~~sLi~~~~~-------~~~-------~mHdlv~~~~~~i~~ 500 (1109)
.+..+ ...+..|.++++|..... +++ ..|++++.+...+..
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 325 YGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 23222 234788999999987432 221 246666666555544
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.23 E-value=1.1e-10 Score=125.22 Aligned_cols=201 Identities=15% Similarity=0.128 Sum_probs=120.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|.....++||+..++.+..++..+. ..+.+.|+|++|+||||||+.+++.+...+..... . ....... .
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~-~--------~~~~~~~-~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-P--------CGVCDNC-R 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS-C--------CSCSHHH-H
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C--------CcccHHH-H
Confidence 3445679999999999999887432 23588999999999999999999877644311100 0 0000000 0
Q ss_pred HHHHHHh-hccCcccccccccHHHHHH---HH-----cCCCCceEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 261 QLLSDLL-KLADISIWNVDDGINIIGS---RL-----RQKKVLLVIDDVAD--VEQLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 261 ~ll~~l~-~~~~~~~~~~~~~~~~l~~---~L-----~~k~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
.+..... ...... .........+.. .+ .+++.+|||||++. .+.++.+...+.....+.++|+||+..
T Consensus 88 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 88 EIEQGRFVDLIEID-AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp HHHTTCCSSEEEEE-TTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred HHhccCCcceEEec-CcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 0000000 000000 000011111111 11 34678999999965 455666665554445678899998765
Q ss_pred hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhh
Q 001277 330 QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSF 395 (1109)
Q Consensus 330 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~ 395 (1109)
......-......+++++++.+|..+++...+...... -..+..+.|+++++|+|..+..+...
T Consensus 167 ~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 167 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 42211101112389999999999999999887543322 22356789999999999988776543
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=1.1e-10 Score=120.33 Aligned_cols=124 Identities=25% Similarity=0.280 Sum_probs=66.6
Q ss_pred ceeeccccCCccccccccccCCCcEEeCCCCcCCccccc--cccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccC
Q 001277 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSH--TLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDG 654 (1109)
Q Consensus 577 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 654 (1109)
+.++++++.++.+|..+.. +|+.|++++|. +..++. .+..+++|++|+|++|......|..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5566666666666654432 66666666653 333332 255666666666666655555555566666666666666
Q ss_pred ccCcccCCc-ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCC
Q 001277 655 TSIAEVPSS-IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCS 703 (1109)
Q Consensus 655 ~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 703 (1109)
|.+..++.. +..+++|++|+|++|......|..+..+++|++|+|++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 666555432 4445555555555544433334444444444444444443
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=1.2e-10 Score=119.85 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCcEEeccCccCcccCCc--ccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEec
Q 001277 646 DLMELFLDGTSIAEVPSS--IELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDI 723 (1109)
Q Consensus 646 ~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 723 (1109)
+|++|++++|.+..++.. ++.+++|++|+|++|......|..+.++++|++|+|++|......+..+..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555555432 555555555555555444444555555666666666665544444445556666666666
Q ss_pred CCCcccCC-CccccccCCCcEEEccCCCC
Q 001277 724 SGTAIRRP-PSSIFVMNNLKTLSFSGCNG 751 (1109)
Q Consensus 724 ~~~~i~~~-p~~l~~l~~L~~L~L~~c~~ 751 (1109)
++|.++++ |..+..+++|+.|+|++|..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 66666654 45555666666666666543
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=2.2e-10 Score=117.95 Aligned_cols=107 Identities=25% Similarity=0.310 Sum_probs=74.0
Q ss_pred CCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecC
Q 001277 645 KDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDIS 724 (1109)
Q Consensus 645 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 724 (1109)
++|++|+|++|.+..+|..+..+++|+.|+|++|......+..+.++++|++|+|++|......|..+..+++|+.|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 35666666666666666666677777777777665544444556677777777777776555555567777788888888
Q ss_pred CCcccCCCc-cccccCCCcEEEccCCCC
Q 001277 725 GTAIRRPPS-SIFVMNNLKTLSFSGCNG 751 (1109)
Q Consensus 725 ~~~i~~~p~-~l~~l~~L~~L~L~~c~~ 751 (1109)
+|.++.+|. .+..+++|+.|+|++|..
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 888877765 466778888888877653
No 148
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=6.8e-11 Score=119.92 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=68.3
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccccccccCCCcEEeCCCCcCCcccccc-ccccCcC
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHT-LRRLQCL 623 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L 623 (1109)
+..+.+|+.|++++|. ++.+ +.+....++|++|++++|.++.+ ..+..+++|++|++++|. +..+|.. +..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCC-Cchh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 3445566777777665 5554 44333333566666666666655 455556666666666553 3333322 2555566
Q ss_pred cEEEecCCCCCCcccc--cccCCCCCcEEeccCccCcccCCc----ccCCCCCcEEeeecc
Q 001277 624 KNLTLSGCSKLKKFPE--SLGSMKDLMELFLDGTSIAEVPSS----IELLTGLQLLNLNNC 678 (1109)
Q Consensus 624 ~~L~L~~~~~~~~~p~--~l~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~c 678 (1109)
++|+|++|.. ..+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6666655533 33443 455555555555555555555543 444555555555444
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=4.6e-10 Score=113.88 Aligned_cols=42 Identities=26% Similarity=0.387 Sum_probs=26.6
Q ss_pred CCCCCCCCEEecCCCCCCCCCccc-ccCCCCCCCEEeCCCCCCcc
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQNNFVT 824 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~~L~~L~Ls~n~l~~ 824 (1109)
+..+++|++|+|++|.+. + +|. .+..+++|+.|+|++|.+..
T Consensus 96 ~~~l~~L~~L~l~~N~l~-~-~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLK-S-VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTCTTCCEEECCSSCCS-C-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhCCcccCEEECcCCcce-E-eCHHHhcCCcccCEEEecCCCeec
Confidence 455666777777777663 2 333 34667777777777777664
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=3.6e-11 Score=135.43 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=69.1
Q ss_pred CCCccEEecCCCcccCCCc-cccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCCCCCC-EEec
Q 001277 715 VESLEELDISGTAIRRPPS-SIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLS-KLDL 792 (1109)
Q Consensus 715 l~~L~~L~L~~~~i~~~p~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~-~L~L 792 (1109)
+++|+.|+|++|.++.+|. .+..+++|+.|+|.++ ....+ ...|.++++|+ .|+|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~---------------------~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIG---------------------QRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEEC---------------------TTTTTTCTTCCEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceeh---------------------HHHhhCChhccEEEEE
Confidence 6778888888888887754 4667788888888764 11110 23477788888 8888
Q ss_pred CCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch-hhhccCCCCcee
Q 001277 793 SDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLD 839 (1109)
Q Consensus 793 s~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~ 839 (1109)
.+ ++.. .-+..+..+++|+.|+|++|+++.++. .+..+++|+.|+
T Consensus 282 ~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA-SVTA-IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CT-TCCE-ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceE-EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77 4422 123567778888888888888887775 466777777665
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.14 E-value=2.5e-10 Score=120.45 Aligned_cols=187 Identities=12% Similarity=0.173 Sum_probs=116.0
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEeeechhhhcccCChHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
|.....++|++..++.+..++... ..+.+.|+|++|+|||++|+.+++.+... +...+...+.. ...+ ...+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~-~~~~- 85 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---DERG-IDVV- 85 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT---CTTC-HHHH-
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc---cccC-hHHH-
Confidence 445578999999999999998744 23348999999999999999999876443 22222222111 1111 2111
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCchhh-HhhC
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQLL-VAHE 336 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~~ 336 (1109)
...+........ ....++.+|||||++.. +..+.+...+.....+.++|+||+..... ....
T Consensus 86 ~~~~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~ 150 (226)
T 2chg_A 86 RHKIKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (226)
T ss_dssp HHHHHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH
Confidence 111111111000 01256889999999764 34455544443345678899998865321 1111
Q ss_pred CCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 337 VDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 337 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
.....+++.+++.++..+++...+...... -..+..+.+++.++|.|..+..+
T Consensus 151 -~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 151 -SRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp -TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred -HhCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 111279999999999999999887542222 22356778889999999865544
No 152
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=5.9e-11 Score=120.36 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=58.3
Q ss_pred CCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCC-CCCCCCcEEEecCCCCCcccCc--ccCCCCCccEEe
Q 001277 646 DLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCI-NGLRSLKTLNLSGCSKLQNVPE--TLGQVESLEELD 722 (1109)
Q Consensus 646 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i-~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~L~ 722 (1109)
+|++|++++|.+..+ ..+..+++|+.|++++|.. ..+|..+ ..+++|++|++++|.. +.+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEE
Confidence 444444444444444 3344455555555555432 2333322 4555666666665543 44454 566677777777
Q ss_pred cCCCcccCCCcc----ccccCCCcEEEccCCC
Q 001277 723 ISGTAIRRPPSS----IFVMNNLKTLSFSGCN 750 (1109)
Q Consensus 723 L~~~~i~~~p~~----l~~l~~L~~L~L~~c~ 750 (1109)
+++|.+...|.. +..+++|+.|++++|.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777777777664 6777788888777764
No 153
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=2.9e-10 Score=117.06 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=76.4
Q ss_pred ceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCcc
Q 001277 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTS 656 (1109)
Q Consensus 577 ~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 656 (1109)
+.++++++.++.+|..+ .++|+.|++++|. +..+|..+.++++|++|+|++|......+..+.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 34555555566665543 2456666666653 34555556666666666666665555555566666777777777777
Q ss_pred CcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCC
Q 001277 657 IAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCS 703 (1109)
Q Consensus 657 i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 703 (1109)
+..++. .+..+++|+.|+|++|......+..+..+++|++|+|++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 766653 46667777777777755433223346667777777777765
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=8.7e-10 Score=111.82 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=60.5
Q ss_pred cceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCc
Q 001277 576 LSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGT 655 (1109)
Q Consensus 576 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 655 (1109)
.+.+++++++++.+|..+ .++|+.|++++|......+..+..+++|++|+|++|......+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 345555555555555433 245555555554322222223344555555555554333222223344444444444444
Q ss_pred cCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCc-ccCCCCCccEEecCCCcccCC
Q 001277 656 SIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPE-TLGQVESLEELDISGTAIRRP 731 (1109)
Q Consensus 656 ~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~~ 731 (1109)
.+..+|. ..+.++++|++|++++|... .+|. .+..+++|+.|+|++|.+...
T Consensus 87 ~l~~~~~-----------------------~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPN-----------------------GVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCT-----------------------TTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCH-----------------------HHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence 4444433 22344555555555555432 2332 235556666666666655543
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=3.7e-12 Score=132.10 Aligned_cols=128 Identities=26% Similarity=0.287 Sum_probs=69.9
Q ss_pred ccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCC
Q 001277 613 LSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLR 692 (1109)
Q Consensus 613 lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~ 692 (1109)
+|..+..+++|++|+|++|... .+| .+..+++|++|++++|.+..+|..+..+++|+.|++++|.. ..+| .+..++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l-~~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLS-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC-CCHH-HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC-CcCC-ccccCC
Confidence 3334555555555555554322 244 45555555555555555555555555555666666665532 2344 344556
Q ss_pred CCcEEEecCCCCCcccC--cccCCCCCccEEecCCCcccCCCc-----------cccccCCCcEEE
Q 001277 693 SLKTLNLSGCSKLQNVP--ETLGQVESLEELDISGTAIRRPPS-----------SIFVMNNLKTLS 745 (1109)
Q Consensus 693 ~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~L~~~~i~~~p~-----------~l~~l~~L~~L~ 745 (1109)
+|++|++++|... .++ ..+..+++|++|++++|.+...+. .+..+++|+.|+
T Consensus 116 ~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 NLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6666666665432 222 245666777777777776655422 256677777776
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=1.6e-09 Score=121.58 Aligned_cols=187 Identities=16% Similarity=0.245 Sum_probs=113.9
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEeeechhhhcccCChHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
|.....++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+... +...+...+. ....+ ... .
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~---~~~~~-~~~-i 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---SDDRG-IDV-V 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT---TSCCS-HHH-H
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC---ccccC-hHH-H
Confidence 444577999999999999998644 23338999999999999999999976432 2222222111 11111 211 1
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHH-cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCchh-hHhh
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRL-RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQL-LVAH 335 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~ 335 (1109)
+.++..+.... ..+ .+++.++||||++.. +..+.|...+.....++++|+||+...- ....
T Consensus 90 ~~~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 90 RNQIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp HTHHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence 12222221000 011 345889999999763 3444444433333567888888876432 1111
Q ss_pred CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh-HHHH
Q 001277 336 EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA-LTVL 392 (1109)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~l 392 (1109)
. .....+++.+++.++..+++...+...... -..+..+.+++.++|.|.. +..+
T Consensus 155 ~-sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 155 Q-SQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp H-TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred H-hhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 112289999999999999999877432221 1235678899999999954 4444
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=1e-11 Score=128.67 Aligned_cols=139 Identities=23% Similarity=0.316 Sum_probs=92.5
Q ss_pred CCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcc
Q 001277 585 TIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSI 664 (1109)
Q Consensus 585 ~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i 664 (1109)
.++.+|..+..+++|++|++++|. +..+| .+.++++|++|++++|... .+|..+..+++|++|++++|.+..+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 344555566777777777777663 44466 5677777777777776433 56666666777777777777777776 57
Q ss_pred cCCCCCcEEeeeccCCCcccC--CCCCCCCCCcEEEecCCCCCcccCc----------ccCCCCCccEEecCCCcccC
Q 001277 665 ELLTGLQLLNLNNCSNLVRLP--SCINGLRSLKTLNLSGCSKLQNVPE----------TLGQVESLEELDISGTAIRR 730 (1109)
Q Consensus 665 ~~l~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~L~Ls~c~~l~~lp~----------~l~~l~~L~~L~L~~~~i~~ 730 (1109)
..+++|+.|++++|... .++ ..+..+++|++|++++|......|. .+..+++|+.|+ ++.++.
T Consensus 112 ~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 77778888888776533 333 2466788888888888765444443 266778888876 555543
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=5.2e-09 Score=117.68 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=69.0
Q ss_pred CCCCcEEeccCccCcccCC-cccCCCCCcEEeeeccCCCcccCC-CCCCCCCCc-EEEecCCCCCcccC-cccCCCCCcc
Q 001277 644 MKDLMELFLDGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPS-CINGLRSLK-TLNLSGCSKLQNVP-ETLGQVESLE 719 (1109)
Q Consensus 644 l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~-~L~Ls~c~~l~~lp-~~l~~l~~L~ 719 (1109)
+++|+.|+|++|.+..+|. .+..+++|+.|+|.++ +..++. .+.++++|+ .|++.. .+..++ ..|.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 6778888888777777765 3677778888888764 555543 466777787 888876 344443 5677778888
Q ss_pred EEecCCCcccCCCc-cccccCCCcEEE
Q 001277 720 ELDISGTAIRRPPS-SIFVMNNLKTLS 745 (1109)
Q Consensus 720 ~L~L~~~~i~~~p~-~l~~l~~L~~L~ 745 (1109)
.|++++|.++.++. .+.++++|+.|+
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhhc
Confidence 88887777777743 566777777765
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=1.1e-07 Score=109.31 Aligned_cols=215 Identities=13% Similarity=0.237 Sum_probs=135.2
Q ss_pred CCcEEeCCCCcCCccccc-cccccCcCcEEEecCCCCCCcc-cccccCCCCCcEEeccCccCcccCCcccCCCCCcEEee
Q 001277 598 GLVLLNLKDCKNLKSLSH-TLRRLQCLKNLTLSGCSKLKKF-PESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNL 675 (1109)
Q Consensus 598 ~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 675 (1109)
+|+.+.+..+ ++.++. +|.+ .+|+.+.|.. .+..+ +..+.++.+|+.+++..+.+..++...-...+|+.+.|
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 5666666543 444432 3444 3577777764 23333 34667777788888877778777765544678888887
Q ss_pred eccCCCcccC-CCCCCCCCCcEEEecCCCCCcccCc-ccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCC
Q 001277 676 NNCSNLVRLP-SCINGLRSLKTLNLSGCSKLQNVPE-TLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGP 752 (1109)
Q Consensus 676 ~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~ 752 (1109)
.++ +..++ ..+.++++|+.+.+..+ +..++. .+.+ .+|+.+.|. +.++.+ ...+..+++|+.+.+.++...
T Consensus 211 p~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 211 PVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred CCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 642 44444 34667788888888753 344443 3334 678888883 445555 456777888888888775432
Q ss_pred CCCCCcccccccccccccCCCccccCCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch-hhhc
Q 001277 753 PSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA-SINS 831 (1109)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~ 831 (1109)
.... ...-...|.+|++|+.+.|.+ ++.. .-...+..+++|+.|.|..+ ++.++. .+..
T Consensus 285 ~~~~-----------------~~I~~~aF~~c~~L~~l~l~~-~i~~-I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 285 DDPE-----------------AMIHPYCLEGCPKLARFEIPE-SIRI-LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp CCTT-----------------CEECTTTTTTCTTCCEECCCT-TCCE-ECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred CCcc-----------------cEECHHHhhCCccCCeEEeCC-ceEE-EhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 1000 000134578888899999884 3422 12345778889999999554 777764 5677
Q ss_pred cCCCCceeccCCc
Q 001277 832 LFNLGQLDLEDCK 844 (1109)
Q Consensus 832 l~~L~~L~L~~c~ 844 (1109)
+ +|+.|++.++.
T Consensus 345 ~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 345 T-GIKEVKVEGTT 356 (401)
T ss_dssp S-CCCEEEECCSS
T ss_pred C-CCCEEEEcCCC
Confidence 7 89999998773
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=7.8e-08 Score=110.59 Aligned_cols=163 Identities=15% Similarity=0.208 Sum_probs=76.3
Q ss_pred CcceeeccccCCcccccc-ccccCCCcEEeCCCCcCCcccc-ccccccCcCcEEEecCCCCCCcccccccCCCCCcEEec
Q 001277 575 DLSELFLDRTTIEELPLS-IQHLTGLVLLNLKDCKNLKSLS-HTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFL 652 (1109)
Q Consensus 575 ~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 652 (1109)
+|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++ .+|.++.+|+.++|.+| .+..++...-.+.+|+.+.|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 3555555433 4444432 223 3455555553 333333 34555566666666553 23333332222455666665
Q ss_pred cCccCcccCC-cccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCccc-CcccCCCCCccEEecCCCccc-
Q 001277 653 DGTSIAEVPS-SIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNV-PETLGQVESLEELDISGTAIR- 729 (1109)
Q Consensus 653 ~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~~~i~- 729 (1109)
.. .+..++. .+..+++|+.+.+.+ ++..++.....-.+|+.+.+.. .+..+ ...+.++++|+.+.+.++.+.
T Consensus 211 p~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 211 PV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred CC-chheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccC
Confidence 52 2444432 345555666666554 2333433222225566665532 12333 234555556666666555443
Q ss_pred ----CC-CccccccCCCcEEEcc
Q 001277 730 ----RP-PSSIFVMNNLKTLSFS 747 (1109)
Q Consensus 730 ----~~-p~~l~~l~~L~~L~L~ 747 (1109)
.+ +..+..+++|+.+.|.
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCC
T ss_pred CcccEECHHHhhCCccCCeEEeC
Confidence 12 3344455556655554
No 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=1.2e-08 Score=102.38 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=59.2
Q ss_pred cEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCc
Q 001277 648 MELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTA 727 (1109)
Q Consensus 648 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 727 (1109)
+.|+++++.+..+|..+. ++|+.|+|++|......|..+.++++|++|+|++|......+..+..+++|+.|+|++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 445555555555555442 556666666654444445555666666666666665443333345666666666666666
Q ss_pred ccCCCc-cccccCCCcEEEccCCCC
Q 001277 728 IRRPPS-SIFVMNNLKTLSFSGCNG 751 (1109)
Q Consensus 728 i~~~p~-~l~~l~~L~~L~L~~c~~ 751 (1109)
++.+|. .+..+++|+.|+|++|..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 666654 356666777777766653
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=1.3e-08 Score=102.65 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=58.2
Q ss_pred cEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCcccCc-ccCCCCCccEEecCCC
Q 001277 648 MELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNVPE-TLGQVESLEELDISGT 726 (1109)
Q Consensus 648 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~ 726 (1109)
+.++++++.+.++|..+. ++|+.|+|++|......|..+.++++|++|+|++|... .+|. .+..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCC
Confidence 345555555555555443 55666666655544444555556666666666666433 3333 3456666666666666
Q ss_pred cccCCCcc-ccccCCCcEEEccCCCC
Q 001277 727 AIRRPPSS-IFVMNNLKTLSFSGCNG 751 (1109)
Q Consensus 727 ~i~~~p~~-l~~l~~L~~L~L~~c~~ 751 (1109)
.++.+|.. +..+++|+.|+|++|..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 66666543 56666666776666653
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.1e-08 Score=114.80 Aligned_cols=187 Identities=15% Similarity=0.197 Sum_probs=113.9
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc-cceEEeeechhhhcccCChHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
|....+++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+.... ...+...+.... .+ ...+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~---~~-~~~~- 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE---RG-INVI- 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH---HH-HHTT-
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc---Cc-hHHH-
Confidence 444567999999999999888754 333489999999999999999999764332 111111111110 00 0000
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCchh-hHhhC
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQL-LVAHE 336 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~~ 336 (1109)
...+.+..... ....+++.++|+||++.. +..+.|...+.....+.++|+||....- .....
T Consensus 94 ~~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 94 REKVKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHHHHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 01111111000 001256789999999764 4455555544444567889988876532 11111
Q ss_pred CCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 337 VDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 337 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
. ....+++.+++.++..+++...+..... .-..+..+.+++.++|.|..+..+
T Consensus 159 s-r~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 159 S-RCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp H-TEEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHH
T ss_pred h-hCcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHH
Confidence 0 1127899999999999999887754322 223466788999999999865544
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=1.8e-08 Score=101.58 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=36.0
Q ss_pred cCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCc-ccCCCCCcEEeeeccCCCcccCC-CCCCCCCCcEEEe
Q 001277 622 CLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSS-IELLTGLQLLNLNNCSNLVRLPS-CINGLRSLKTLNL 699 (1109)
Q Consensus 622 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L 699 (1109)
+|++|+|++|......|..+.++++|++|+|++|.+..+|.. +..+++|+.|+|++|... .+|. .+..+++|++|+|
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEEC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEEEe
Confidence 333444443333333333444444444444444444444433 244555555555544322 2332 2445555555555
Q ss_pred cCCC
Q 001277 700 SGCS 703 (1109)
Q Consensus 700 s~c~ 703 (1109)
++|.
T Consensus 113 ~~N~ 116 (174)
T 2r9u_A 113 YNNP 116 (174)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5554
No 165
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=1.8e-08 Score=101.19 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=45.1
Q ss_pred cceeeccccCCccccccccccCCCcEEeCCCCcCCccccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCc
Q 001277 576 LSELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGT 655 (1109)
Q Consensus 576 L~~L~L~~~~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 655 (1109)
.+.++++++.++.+|..+ .++|++|+|++|......|..+.++++|++|+|++|......+..+..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455666666666555544 245555555554333323444444555555555554333222223344444444444444
Q ss_pred cCcccCCc-ccCCCCCcEEeeec
Q 001277 656 SIAEVPSS-IELLTGLQLLNLNN 677 (1109)
Q Consensus 656 ~i~~lp~~-i~~l~~L~~L~L~~ 677 (1109)
.+..+|.. +..+++|+.|+|++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCC
Confidence 44444332 33333344433333
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=1.3e-07 Score=105.94 Aligned_cols=256 Identities=19% Similarity=0.150 Sum_probs=144.1
Q ss_pred cccccccccchhhHHHHHhhhcc---cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIAT---ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
|.....+||++..++.+..++.. .....+.+.|+|++|+|||++|+++++.....| .++. ... ......
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~----~~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPA----IEKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTT----CCSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccc----cCChHH
Confidence 34557899999999998887752 122346788999999999999999998774322 1221 111 000111
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH--HHHHHHhcCCCC------------------C
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE--QLQNLARKRDWF------------------G 317 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~------------------~ 317 (1109)
+...+ ... ..++.+|+||+++... ..+.+...+... .
T Consensus 80 ----l~~~l------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 80 ----LAAIL------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp ----HHHHH------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred ----HHHHH------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 11110 000 1356799999997642 333333221110 1
Q ss_pred CCcEEEEEeCCchhh-HhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhc
Q 001277 318 PGSKIVITTRDKQLL-VAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFL 396 (1109)
Q Consensus 318 ~gs~IiiTTR~~~v~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 396 (1109)
++.++|.||...... ......-...+.+.+++.+|..+++...+...... -..+..+.++++++|+|..+..+...+
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 345677777644211 11110111389999999999999998877543322 224667889999999998877665433
Q ss_pred CC---------CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcccCC--CCHHHHHHHHHhCCCCcc
Q 001277 397 NG---------RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACFFKS--WDRDHVEKILEGCGFSPV 465 (1109)
Q Consensus 397 ~~---------~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~~~~~~ 465 (1109)
.. .+.+....++..+ ......+++.++..+..+.....+ .....+.+.+ |....
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~ 279 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPG 279 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHH
Confidence 21 1333444333322 223456777777777766644332 3344444433 32211
Q ss_pred ---cchH-HhhhccCeeEeCCCe
Q 001277 466 ---IGIE-VLIEKSLLTVDDGNR 484 (1109)
Q Consensus 466 ---~~l~-~L~~~sLi~~~~~~~ 484 (1109)
..++ .+++.+++.....++
T Consensus 280 tl~~~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 280 TLEEVHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HHHHHTHHHHHHTTSEEEETTEE
T ss_pred HHHHHHhHHHHHhcchhcCCccc
Confidence 1122 377788888664443
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=6.5e-07 Score=103.17 Aligned_cols=316 Identities=11% Similarity=0.077 Sum_probs=145.3
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCcccc-ccccccCc
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLS-HTLRRLQC 622 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~ 622 (1109)
+.++.+|+.+.+... ++.+....+..+.+|+.+++..+ ++.++. .+..+.+|+.+.+... +..+. .+|.+...
T Consensus 67 F~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCC
T ss_pred hhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccc
Confidence 456677777777542 56664445566677777777643 555543 3455666666555431 22221 12222222
Q ss_pred CcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccC-CcccCCCCCcEEeeeccCCCcccC-CCCCCCCCCcEEEec
Q 001277 623 LKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVP-SSIELLTGLQLLNLNNCSNLVRLP-SCINGLRSLKTLNLS 700 (1109)
Q Consensus 623 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls 700 (1109)
++....... ...-...+.++++|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ++.++ ..+.++..|+.+.+.
T Consensus 142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp SEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccCccc--cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC
Confidence 222211111 1111234555666666666533 23333 23455556666655432 22222 223445555554443
Q ss_pred CCCCCcccCcccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCC
Q 001277 701 GCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLP 779 (1109)
Q Consensus 701 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 779 (1109)
.+. ..+........+|+.+.+..+. +.+ ...+..+.+|+.+.+..+........+.....+........ .....
T Consensus 217 ~~~--~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~--~i~~~ 291 (394)
T 4fs7_A 217 NSL--YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV--IVPEK 291 (394)
T ss_dssp TTC--CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS--EECTT
T ss_pred CCc--eEeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCce--eeccc
Confidence 321 1122222233445555543321 111 22334455555555543321111000000000000000000 00112
Q ss_pred CCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch-hhhccCCCCceeccCCcCcCcCCCCCCCcce
Q 001277 780 SLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLEDCKRLQSMPQLPSNLYE 858 (1109)
Q Consensus 780 ~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~c~~L~~lp~lp~~L~~ 858 (1109)
.+.++.+|+.+.+..+ +.. .-...+..+.+|+.++|.. +++.|+. .+..|++|+.+.+..+ ++.|+.-
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~------ 360 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKF-IGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN------ 360 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCE-ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTT------
T ss_pred cccccccccccccccc-cce-echhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHH------
Confidence 3667888888888654 311 1124567888999999864 4777753 5677778887777432 3333321
Q ss_pred EeccCCccccccccccccccccccccccc
Q 001277 859 VQVNGCASLVTLSGALKLCKSKCTSINCI 887 (1109)
Q Consensus 859 L~~~~C~~L~~l~~~~~~~~~~~~~~~c~ 887 (1109)
-..+|++|+.+.-+.........|.+|.
T Consensus 361 -aF~~C~~L~~i~lp~~~~~~~~~F~~c~ 388 (394)
T 4fs7_A 361 -AFQGCINLKKVELPKRLEQYRYDFEDTT 388 (394)
T ss_dssp -TBTTCTTCCEEEEEGGGGGGGGGBCTTC
T ss_pred -HhhCCCCCCEEEECCCCEEhhheecCCC
Confidence 2467888877643322222233456664
No 168
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.64 E-value=2e-07 Score=104.09 Aligned_cols=186 Identities=12% Similarity=0.157 Sum_probs=114.2
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc-cccceEEeeechhhhcccCChHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH-EFDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
|....+++|++..++.+..++..+ ..+.+.++|++|+|||++|+.+++.+.. .+...+...+..... ....+....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 89 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER-GIDVVRHKI 89 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT-CTTTSSHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc-ChHHHHHHH
Confidence 444567999999999999988653 3334899999999999999999987632 221111111111100 000011111
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHH-cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch-hhHhh
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRL-RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAH 335 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~ 335 (1109)
... ... ..+ .+++.++|+|+++.. +..+.|...+.....+.++|+||.... +....
T Consensus 90 ~~~----~~~----------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 90 KEF----ART----------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp HHH----HHS----------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred HHH----Hhc----------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 110 000 001 246789999999754 446667666665567788888887643 21111
Q ss_pred CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 336 EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
.. ....+++.+++.++..+++...+...... -..+..+.+++.++|.+..+..+
T Consensus 150 ~s-r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 150 QS-RCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HT-TCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred Hh-hCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 11279999999999999998877543322 23456788889999999865433
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.59 E-value=3e-07 Score=105.16 Aligned_cols=197 Identities=17% Similarity=0.146 Sum_probs=114.4
Q ss_pred ccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHH
Q 001277 182 EILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQ 261 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1109)
....+++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ....+.... ...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~~~~-~~~ 81 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCDN-CRE 81 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSSSHH-HHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcccHH-HHH
Confidence 345679999999999999886432 235788999999999999999998775332100 000000000 000
Q ss_pred HHH----HHhhccCcccccccccHHHHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch
Q 001277 262 LLS----DLLKLADISIWNVDDGINIIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ 330 (1109)
Q Consensus 262 ll~----~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~ 330 (1109)
+.. ++........... +....+.+.+ .+++.++|+||++.. +..+.+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCS-SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred HhccCCCceEEecccccCCH-HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000 0000000000011 1122333332 245789999999653 445556554443456677787776543
Q ss_pred -hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 001277 331 -LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLG 393 (1109)
Q Consensus 331 -v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 393 (1109)
+..... .....+++.+++.++..+++...+-..... -..+....+++.++|.|..+..+.
T Consensus 161 ~l~~~l~-sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 161 KLPVTIL-SRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hCcHHHH-hheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 211111 112389999999999999998776432211 123567889999999998776554
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=1.6e-07 Score=106.35 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=72.4
Q ss_pred EeccCc-cCcccCCcccCCCCCcEEeeeccCCCcccC-CCCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCc
Q 001277 650 LFLDGT-SIAEVPSSIELLTGLQLLNLNNCSNLVRLP-SCINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTA 727 (1109)
Q Consensus 650 L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~ 727 (1109)
++++++ .+..+|. +..+++|+.|+|++++.+..+| ..+.+|++|++|+|++|...+..|..++++++|+.|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 6777777 7777777777777534444454 457778888888888877655556677888888888888888
Q ss_pred ccCCCccccccCCCcEEEccCCCCC
Q 001277 728 IRRPPSSIFVMNNLKTLSFSGCNGP 752 (1109)
Q Consensus 728 i~~~p~~l~~l~~L~~L~L~~c~~~ 752 (1109)
++.+|..+.....|+.|+|.+|...
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCcc
Confidence 8888765554444888888887644
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=2.2e-08 Score=113.03 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=77.3
Q ss_pred CCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCC-Cccc--cccCCCcEEEccCCCCCCCCCCcccccccc
Q 001277 689 NGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSI--FVMNNLKTLSFSGCNGPPSSTSWHWHFPFN 765 (1109)
Q Consensus 689 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~l--~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~ 765 (1109)
..+++|++|+|++|..+ .++. +. +++|++|+|..+.+..- ...+ ..+++|+.|+|+.+.......
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--------- 236 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD--------- 236 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC---------
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc---------
Confidence 44566666666665322 2222 22 56677777766655432 1122 256777777775321100000
Q ss_pred cccccCCCccccCCCC--CCCCCCCEEecCCCCCCCCCccccc---CCCCCCCEEeCCCCCCcc-----cchhhhccCCC
Q 001277 766 LMGQRSYPVALMLPSL--SGLHSLSKLDLSDCGLGEGAIPNDI---GNLCSLKQLNLSQNNFVT-----LPASINSLFNL 835 (1109)
Q Consensus 766 ~l~~~~~~~~~l~~~l--~~l~~L~~L~Ls~~~l~~~~lp~~l---~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~L 835 (1109)
.....+.+.+ ..+++|++|+|++|.+.+. .+..+ ..+++|++|+|+.|.+.. ++..+..+++|
T Consensus 237 ------~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 237 ------GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV-VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309 (362)
T ss_dssp ------SCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTC
T ss_pred ------hhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcc
Confidence 0000011112 3578899999988887431 11111 357889999999888874 55566778888
Q ss_pred CceeccCCc
Q 001277 836 GQLDLEDCK 844 (1109)
Q Consensus 836 ~~L~L~~c~ 844 (1109)
+.|+|++|.
T Consensus 310 ~~L~L~~n~ 318 (362)
T 2ra8_A 310 KFINMKYNY 318 (362)
T ss_dssp SEEECCSBB
T ss_pred eEEECCCCc
Confidence 888888774
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.53 E-value=8.6e-09 Score=117.41 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=35.3
Q ss_pred CCCCCCcEEEecCCCCCc----ccCcccCCCCCccEEecCCCcccCC-----CccccccCCCcEEEccCCCC
Q 001277 689 NGLRSLKTLNLSGCSKLQ----NVPETLGQVESLEELDISGTAIRRP-----PSSIFVMNNLKTLSFSGCNG 751 (1109)
Q Consensus 689 ~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~~-----p~~l~~l~~L~~L~L~~c~~ 751 (1109)
..+++|++|+|++|.... .++..+...++|++|+|++|.++.. +..+...++|++|+|++|..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 344555555555555322 2234445556667777777666542 33344566777777777753
No 173
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=5.9e-08 Score=109.51 Aligned_cols=135 Identities=20% Similarity=0.225 Sum_probs=86.4
Q ss_pred ccccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCccc-CCcc--cCCCCCcEEeeeccCC-------Cc
Q 001277 613 LSHTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEV-PSSI--ELLTGLQLLNLNNCSN-------LV 682 (1109)
Q Consensus 613 lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~i--~~l~~L~~L~L~~c~~-------l~ 682 (1109)
+...+..+++|+.|.|++|... .++. + .+++|++|+|..+.+..- ...+ ..+++|+.|+|+.+.+ ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4444566778888888776332 2333 3 267888888877766521 1122 2678888888863211 11
Q ss_pred ccCCCC--CCCCCCcEEEecCCCCCcccCccc---CCCCCccEEecCCCcccC-----CCccccccCCCcEEEccCCC
Q 001277 683 RLPSCI--NGLRSLKTLNLSGCSKLQNVPETL---GQVESLEELDISGTAIRR-----PPSSIFVMNNLKTLSFSGCN 750 (1109)
Q Consensus 683 ~lp~~i--~~l~~L~~L~Ls~c~~l~~lp~~l---~~l~~L~~L~L~~~~i~~-----~p~~l~~l~~L~~L~L~~c~ 750 (1109)
.+...+ ..+++|++|+|.+|......+..+ ..+++|++|+|+.|.+.+ ++..+.++++|+.|+|++|.
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 111222 257899999999887654332222 357889999999998876 35556678999999998875
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.52 E-value=4.7e-09 Score=119.61 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=45.5
Q ss_pred CCCcEEeccCccCcc-----cCCcccCCCCCcEEeeeccCCCc----ccCCCCCCCCCCcEEEecCCCCCc----ccCcc
Q 001277 645 KDLMELFLDGTSIAE-----VPSSIELLTGLQLLNLNNCSNLV----RLPSCINGLRSLKTLNLSGCSKLQ----NVPET 711 (1109)
Q Consensus 645 ~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~ 711 (1109)
++|++|+|++|.+.. ++..+..+++|++|+|++|.... .++..+...++|++|+|++|.... .++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 445555555554432 23333445555555555554221 123334445566777776665433 23344
Q ss_pred cCCCCCccEEecCCCcccCC
Q 001277 712 LGQVESLEELDISGTAIRRP 731 (1109)
Q Consensus 712 l~~l~~L~~L~L~~~~i~~~ 731 (1109)
+...++|++|+|++|.++..
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHH
T ss_pred HHhCCCCCEEeccCCCCCHH
Confidence 44566777777777776643
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.48 E-value=8.4e-07 Score=97.27 Aligned_cols=184 Identities=16% Similarity=0.198 Sum_probs=103.8
Q ss_pred CcccccccccchhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhh
Q 001277 180 KPEILKELVGIDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREK 248 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 248 (1109)
+.....+++|++..+++|...+... ....+.+.|+|++|+|||+||+++++.....| +.......
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHH
Confidence 3345678999999999998877521 13456789999999999999999998765432 11111111
Q ss_pred hcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH----------------HHHHHHHhc
Q 001277 249 SEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV----------------EQLQNLARK 312 (1109)
Q Consensus 249 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~ 312 (1109)
.... .... ... ....+......++.+|+||+++.. ..+..+...
T Consensus 88 ~~~~--~~~~-~~~-----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 147 (285)
T 3h4m_A 88 VKKF--IGEG-ASL-----------------VKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE 147 (285)
T ss_dssp CCCS--TTHH-HHH-----------------HHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH
T ss_pred HHhc--cchH-HHH-----------------HHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH
Confidence 1110 0000 000 011112222345679999999654 123333322
Q ss_pred CC--CCCCCcEEEEEeCCchhhHh-h----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCC-
Q 001277 313 RD--WFGPGSKIVITTRDKQLLVA-H----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGG- 384 (1109)
Q Consensus 313 ~~--~~~~gs~IiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G- 384 (1109)
.. ....+..||.||........ . ... ..+.++..+.++..+++..++.......+ .....++..+.|
T Consensus 148 ~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 148 MDGFDARGDVKIIGATNRPDILDPAILRPGRFD--RIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGC 222 (285)
T ss_dssp HHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEE--EEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTC
T ss_pred hhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCC--eEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCC
Confidence 21 12345677778875432211 1 222 27999999999999999888754322211 113556666666
Q ss_pred CchhHHHH
Q 001277 385 LPLALTVL 392 (1109)
Q Consensus 385 lPLal~~l 392 (1109)
.|-.+..+
T Consensus 223 ~~~~i~~l 230 (285)
T 3h4m_A 223 VGAELKAI 230 (285)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 34344433
No 176
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=3.3e-07 Score=103.72 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=48.4
Q ss_pred eecccc-CCccccccccccCCCcEEeCCCCcCCcccc-ccccccCcCcEEEecCCCCCCcccccccCCCCCcEEeccCcc
Q 001277 579 LFLDRT-TIEELPLSIQHLTGLVLLNLKDCKNLKSLS-HTLRRLQCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTS 656 (1109)
Q Consensus 579 L~L~~~-~l~~l~~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 656 (1109)
++++++ .++.+|. +..+++|+.|+|+++..+..+| ..|.++++|++|+|++|......|..+.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 5555655 5555566666665422333333 345555555555555554444444445555555555555555
Q ss_pred CcccCCcccCCCCCcEEeeec
Q 001277 657 IAEVPSSIELLTGLQLLNLNN 677 (1109)
Q Consensus 657 i~~lp~~i~~l~~L~~L~L~~ 677 (1109)
|..+|..+....+|+.|+|.+
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCS
T ss_pred cceeCHHHcccCCceEEEeeC
Confidence 555544322222244444443
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.44 E-value=5.5e-07 Score=91.98 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=41.9
Q ss_pred cccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 183 ILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
....++||+.+++++...+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999988643 3466889999999999999999987644
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.44 E-value=4.5e-07 Score=96.53 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=99.4
Q ss_pred cccccccch---hhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHH
Q 001277 183 ILKELVGID---SRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 183 ~~~~~vGr~---~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
...+|+|.+ ..++.+..+...+ ..+.+.|+|++|+||||||+++++..........++. ....... .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~---~---- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI---S---- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS---C----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH---H----
Confidence 446788743 4455566555432 4578999999999999999999997765533334443 2111100 0
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH--H--HHHHHhcCCCC-CCC-cEEEEEeCCchh--
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE--Q--LQNLARKRDWF-GPG-SKIVITTRDKQL-- 331 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~--~~~l~~~~~~~-~~g-s~IiiTTR~~~v-- 331 (1109)
.+.. +.+ .++.+|||||++... . .+.+...+... ..+ .++|+||+...-
T Consensus 96 ------------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 96 ------------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp ------------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred ------------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 0000 011 346799999996531 1 22222211100 122 258888764321
Q ss_pred --h-Hhh--CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 332 --L-VAH--EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 332 --~-~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
. ... .......+++++++.++..+++...+..... .-..+..+.+++.++|.+-.+..+
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHH
Confidence 0 100 0111138999999999999999887743222 122466778889999988766544
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.44 E-value=3.5e-06 Score=95.28 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=113.0
Q ss_pred chhhhHhhHHHHHhhhccCCcccccccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHH
Q 001277 161 NESEFIDEIVNVISNKIRTKPEILKELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 161 ~e~~~i~~iv~~i~~~l~~~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
.+..+++.+...+..+ .++.....++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++
T Consensus 62 ~~~~~~~~i~~~i~~~--~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDH--GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SCHHHHHHHHHHTBCC--SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CChHHHHHHHhhcccC--CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3444455444443322 3344567899999999999887742 123456799999999999999999998
Q ss_pred HHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH-------
Q 001277 231 LISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV------- 303 (1109)
Q Consensus 231 ~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------- 303 (1109)
.....| +..+......... .. ...... ..+...-..++.+|+||+++..
T Consensus 140 ~~~~~~----~~i~~~~l~~~~~--g~-~~~~~~-----------------~~~~~a~~~~~~vl~iDEid~l~~~~~~~ 195 (357)
T 3d8b_A 140 QSGATF----FSISASSLTSKWV--GE-GEKMVR-----------------ALFAVARCQQPAVIFIDEIDSLLSQRGDG 195 (357)
T ss_dssp HTTCEE----EEEEGGGGCCSST--TH-HHHHHH-----------------HHHHHHHHTCSEEEEEETHHHHTBC----
T ss_pred HcCCeE----EEEehHHhhcccc--ch-HHHHHH-----------------HHHHHHHhcCCeEEEEeCchhhhccCCCC
Confidence 764322 2222222111100 00 000011 1111112356789999998543
Q ss_pred ------HHHHHHHhcCC----CCCCCcEEEEEeCCch-hhHhh--CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCch
Q 001277 304 ------EQLQNLARKRD----WFGPGSKIVITTRDKQ-LLVAH--EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGE 370 (1109)
Q Consensus 304 ------~~~~~l~~~~~----~~~~gs~IiiTTR~~~-v~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~ 370 (1109)
..+..++..+. ....+..||.||.... +.... .... .+.+...+.++..+++...+.......
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~--~i~i~~p~~~~r~~il~~~~~~~~~~l-- 271 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVK--RLYIPLPEASARKQIVINLMSKEQCCL-- 271 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHHTSCBCC--
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCce--EEEeCCcCHHHHHHHHHHHHhhcCCCc--
Confidence 11223332221 1123455666775432 21111 2222 788999999999999987764322111
Q ss_pred HHHHHHHHHHHhCC-CchhHHHHhh
Q 001277 371 YVELSKRVLKYAGG-LPLALTVLGS 394 (1109)
Q Consensus 371 ~~~~~~~i~~~~~G-lPLal~~l~~ 394 (1109)
..+..+.+++.+.| .+-.|..+..
T Consensus 272 ~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 272 SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23566788888888 4555665544
No 180
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=9.1e-06 Score=93.52 Aligned_cols=299 Identities=11% Similarity=0.112 Sum_probs=153.7
Q ss_pred CCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCccccccccccCcC
Q 001277 545 KISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCL 623 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 623 (1109)
+.+|.+|+.+++..+ ++.+....+..+..|+.+.+..+ +..+.. .+..+..+..........+ -..+|.++.+|
T Consensus 90 F~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L 164 (394)
T 4fs7_A 90 FENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVI--GDEAFATCESL 164 (394)
T ss_dssp TTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEE--CTTTTTTCTTC
T ss_pred hhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCcccccc--chhhhcccCCC
Confidence 567889999998754 66664555666777777666533 333322 2333333333332222111 12346667777
Q ss_pred cEEEecCCCCCCcccccccCCCCCcEEeccCccCcccC-CcccCCCCCcEEeeeccCCCcccCCCCCCCCCCcEEEecCC
Q 001277 624 KNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVP-SSIELLTGLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGC 702 (1109)
Q Consensus 624 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c 702 (1109)
+.+.+.++ ....-...+.++.+|+.+.+..+ +..++ ..+..+..|+.+.+.++ ...+........+|+.+.+...
T Consensus 165 ~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~ 240 (394)
T 4fs7_A 165 EYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS 240 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT
T ss_pred cEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC
Confidence 77777643 22222345666777777777644 44443 23555666666655432 2222223334455666655432
Q ss_pred CCCcccC-cccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCcccc-CCC
Q 001277 703 SKLQNVP-ETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALM-LPS 780 (1109)
Q Consensus 703 ~~l~~lp-~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~ 780 (1109)
...+. ..+..+.+|+.+.+..+...-....+..+..|+.+.+....... ..+.....+..+.... .+..+ ...
T Consensus 241 --~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~-~i~~I~~~a 315 (394)
T 4fs7_A 241 --FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD-SVKFIGEEA 315 (394)
T ss_dssp --CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT-TCCEECTTT
T ss_pred --ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccccccccccc-ccceechhh
Confidence 11111 22344455555555443322222333344444444433221000 0000111111111100 01111 234
Q ss_pred CCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch-hhhccCCCCceeccCCcCcCcCCCCCCCcceE
Q 001277 781 LSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLEDCKRLQSMPQLPSNLYEV 859 (1109)
Q Consensus 781 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L 859 (1109)
|.++.+|+.++|..+ +.. .-...+.++.+|+.++|..+ ++.++. .+..|++|+.++|..+ ++.+ . -
T Consensus 316 F~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~-------~-~ 382 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQY-------R-Y 382 (394)
T ss_dssp TTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGG-------G-G
T ss_pred hcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEh-------h-h
Confidence 788999999999754 422 12356788999999999876 777764 5788899999988542 2222 1 1
Q ss_pred eccCCcccccc
Q 001277 860 QVNGCASLVTL 870 (1109)
Q Consensus 860 ~~~~C~~L~~l 870 (1109)
...+|++|+.+
T Consensus 383 ~F~~c~~L~~I 393 (394)
T 4fs7_A 383 DFEDTTKFKWI 393 (394)
T ss_dssp GBCTTCEEEEE
T ss_pred eecCCCCCcEE
Confidence 46788888764
No 181
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.43 E-value=6.4e-06 Score=92.62 Aligned_cols=262 Identities=17% Similarity=0.127 Sum_probs=145.3
Q ss_pred cccccccccchhhHHHHHhhhccc---CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATE---SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
|.....++|++..++.+..++... ....+.|.|+|++|+|||++|+++++.....| +.+. .... .. ...
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~---~~-~~~ 96 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI---EK-SGD 96 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC---CS-HHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc---cc-hhH
Confidence 335678999999999998888642 33456789999999999999999988764432 1111 1100 00 110
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHH--cCCCCceEeccCCCH--HHHHHHHhcCCCC-----------------
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRL--RQKKVLLVIDDVADV--EQLQNLARKRDWF----------------- 316 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~--~~~~~l~~~~~~~----------------- 316 (1109)
+...+ ..+..+|+||+++.. +..+.+...+...
T Consensus 97 --------------------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 97 --------------------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp --------------------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred --------------------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceec
Confidence 11111 235678999999754 3333333221111
Q ss_pred -CCCcEEEEEeCCchh-hHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhh
Q 001277 317 -GPGSKIVITTRDKQL-LVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGS 394 (1109)
Q Consensus 317 -~~gs~IiiTTR~~~v-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~ 394 (1109)
.++.++|.||..... .......-...+++.+++.++..+++...+.... ..-..+..+.+++.+.|.|-.+..+..
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 123566666654321 1111111113899999999999999988774322 222346677888899999965554433
Q ss_pred hc------CC---CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcccCCC--CHHHHHHHHHhCCCC
Q 001277 395 FL------NG---RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACFFKSW--DRDHVEKILEGCGFS 463 (1109)
Q Consensus 395 ~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~~~~ 463 (1109)
.+ .+ .+.+....++.. +..+...++..+++.+..++-. .+. ....+.+.+ |..
T Consensus 229 ~~~~~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~l---g~~ 292 (338)
T 3pfi_A 229 RVRDFADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAAL---SED 292 (338)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHT---TCC
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHh---CCC
Confidence 21 11 123333333322 2233445666666666666554 222 344444433 222
Q ss_pred c---ccchH-HhhhccCeeEeCCCeEehhHHHHHH
Q 001277 464 P---VIGIE-VLIEKSLLTVDDGNRLWMHDLLQEL 494 (1109)
Q Consensus 464 ~---~~~l~-~L~~~sLi~~~~~~~~~mHdlv~~~ 494 (1109)
. ...++ .|++.++|.....++..-..-+..+
T Consensus 293 ~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~~~~ 327 (338)
T 3pfi_A 293 ENTIEDVIEPYLLANGYIERTAKGRIASAKSYSAL 327 (338)
T ss_dssp HHHHHHTTHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHHHHHHhHHHHHcCceecCCCcccccHHHHHHh
Confidence 1 11234 7888999987765655444433333
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=1.6e-06 Score=103.14 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=105.1
Q ss_pred cccccccccchhhHHHHHhhhcccC---------------CCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeec
Q 001277 181 PEILKELVGIDSRLEKLRFLIATES---------------SDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANV 245 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 245 (1109)
|....+++|++..++++..++.... ...+.+.|+|++|+||||+|+++++... + .+...+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~--~~i~in~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--Y--DILEQNA 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--C--EEEEECT
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--C--CEEEEeC
Confidence 4456789999999999999886310 1347899999999999999999999773 1 1221111
Q ss_pred hhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH--HHcCCCCceEeccCCCH--------HHHHHHHhcCCC
Q 001277 246 REKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS--RLRQKKVLLVIDDVADV--------EQLQNLARKRDW 315 (1109)
Q Consensus 246 ~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~--~L~~k~~LlVLDdv~~~--------~~~~~l~~~~~~ 315 (1109)
. ... ........+...... ...........+ ...+++.+||||+++.. ..+..+...
T Consensus 111 s----~~~-~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--- 177 (516)
T 1sxj_A 111 S----DVR-SKTLLNAGVKNALDN-----MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--- 177 (516)
T ss_dssp T----SCC-CHHHHHHTGGGGTTB-----CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH---
T ss_pred C----Ccc-hHHHHHHHHHHHhcc-----ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh---
Confidence 1 111 111111111111110 011111111100 11356789999999653 233333332
Q ss_pred CCCCcEEEEEeCCch---hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch-hHHH
Q 001277 316 FGPGSKIVITTRDKQ---LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL-ALTV 391 (1109)
Q Consensus 316 ~~~gs~IiiTTR~~~---v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 391 (1109)
.+..||+++.+.. +....... ..+++++++.++..+++...+.......+ .+....|++.++|.+- ++..
T Consensus 178 --~~~~iIli~~~~~~~~l~~l~~r~--~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~ 251 (516)
T 1sxj_A 178 --TSTPLILICNERNLPKMRPFDRVC--LDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINL 251 (516)
T ss_dssp --CSSCEEEEESCTTSSTTGGGTTTS--EEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHH
T ss_pred --cCCCEEEEEcCCCCccchhhHhce--EEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHH
Confidence 2334555554422 21111122 37999999999999999887754332211 2446788899999554 4444
Q ss_pred H
Q 001277 392 L 392 (1109)
Q Consensus 392 l 392 (1109)
+
T Consensus 252 L 252 (516)
T 1sxj_A 252 L 252 (516)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=4.1e-06 Score=94.83 Aligned_cols=197 Identities=12% Similarity=0.162 Sum_probs=111.7
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc--cccceEEeeechhhhcccCChHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH--EFDGSTFLANVREKSEKEGSVVSL 258 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l 258 (1109)
|.....++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+.. .+...+...+.. ...+ ...+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---~~~~-~~~~ 106 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS---DERG-ISIV 106 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS---SCCC-HHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc---cccc-hHHH
Confidence 4456789999999999999886542 233889999999999999999987642 122222221111 1111 2221
Q ss_pred HHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch-hhHhh
Q 001277 259 QKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAH 335 (1109)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~ 335 (1109)
.+.......... ...... .....-..++-+|++|+++.. ...+.+...+.......++|++|.... +....
T Consensus 107 -~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l 180 (353)
T 1sxj_D 107 -REKVKNFARLTV---SKPSKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 (353)
T ss_dssp -TTHHHHHHHSCC---CCCCTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred -HHHHHHHhhhcc---cccchh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence 122222211100 000000 000111234569999998653 334444443333345677877775443 21111
Q ss_pred CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHH
Q 001277 336 EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 392 (1109)
.. ....+++.+++.++..+.+...+...... -..+..+.|++.++|.|..+..+
T Consensus 181 ~s-R~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 181 AS-QCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HH-HSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred hc-cCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 10 11278999999999999998876433221 22467789999999999865443
No 184
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.38 E-value=2.6e-06 Score=93.30 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=97.2
Q ss_pred cccccchhhHHHHHhhhcc--cCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc-----ceEE-eeechhhhcccCChH
Q 001277 185 KELVGIDSRLEKLRFLIAT--ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD-----GSTF-LANVREKSEKEGSVV 256 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~-~~~~~~~~~~~~~~~ 256 (1109)
..+.|||.|+++|...|.. .....+.+.|+|++|.|||++|+.+++.+..... ...+ ..+... ..+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~----~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE----LAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC----CC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc----cCCHH
Confidence 3488999999999888763 2445678899999999999999999998864321 1122 122111 11244
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHH------cCCCCceEeccCCCH---HHHHHHHhcCCCCCCCcEEEEEeC
Q 001277 257 SLQKQLLSDLLKLADISIWNVDDGINIIGSRL------RQKKVLLVIDDVADV---EQLQNLARKRDWFGPGSKIVITTR 327 (1109)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L------~~k~~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR 327 (1109)
.....++.++..... ........+.+.+ .++++++|||+++.. +.+-.+............||.++.
T Consensus 96 ~~~~~I~~~L~g~~~----~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n 171 (318)
T 3te6_A 96 ALYEKIWFAISKENL----CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGG 171 (318)
T ss_dssp HHHHHHHHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECC
T ss_pred HHHHHHHHHhcCCCC----CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEec
Confidence 566677777743211 1112223333332 356799999999775 333333321110111223333443
Q ss_pred CchhhH-h------hCCCccceEEcCCCCHHHHHHHHHHhhh
Q 001277 328 DKQLLV-A------HEVDEEHIYNLEVLSNDEALQLFSMKAF 362 (1109)
Q Consensus 328 ~~~v~~-~------~~~~~~~~~~l~~L~~~ea~~Lf~~~af 362 (1109)
...... . .... ...+.+++++.+|-.+++.+++-
T Consensus 172 ~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 172 HNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp SSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 322111 0 1111 12799999999999999998874
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.36 E-value=3.8e-06 Score=97.57 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=104.9
Q ss_pred ccccc-cchhhH--HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccce-EEeeechhhhcccCChHHHH
Q 001277 184 LKELV-GIDSRL--EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGS-TFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 184 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~ 259 (1109)
.+.|| |....+ ..+......... ...+.|+|++|+||||||+++++.+...++.. +...+ ...+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----------~~~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----------HHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHH
Confidence 45566 655443 233333322222 66799999999999999999999887665433 22221 11222
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH----HHHHHHHhcCCC-CCCCcEEEEEeCCch----
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV----EQLQNLARKRDW-FGPGSKIVITTRDKQ---- 330 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~---- 330 (1109)
.++...+.. .....+.+.++.++-+|+|||++.. ...+.+...+.. ...|..||+||.+..
T Consensus 173 ~~~~~~~~~----------~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 173 NDLVDSMKE----------GKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHHT----------TCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHHc----------ccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 233332221 0122344444446789999999543 223333322211 145778999987632
Q ss_pred -----hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 001277 331 -----LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 391 (1109)
Q Consensus 331 -----v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 391 (1109)
+...+... .++.+++++.++..+++.+.+....... ..+....|++.++|.+-.+..
T Consensus 243 ~l~~~L~sR~~~g--~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 243 EFQDRLVSRFQMG--LVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp SCCHHHHHHHHSS--BCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHH
Confidence 12222222 2789999999999999988874322111 124466788888888765543
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.34 E-value=8.5e-06 Score=90.79 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=105.7
Q ss_pred CcccccccccchhhHHHHHhhhc----------ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhh
Q 001277 180 KPEILKELVGIDSRLEKLRFLIA----------TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKS 249 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 249 (1109)
++.....++|.+..++.|...+. ......+-|.|+|++|+|||+||+++++.....| +..+.....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHh
Confidence 34456789999999999988773 1122245789999999999999999999764432 222111110
Q ss_pred cccCChHHHHHHHHHHHhhccCcccccccccHHHH-HHHHcCCCCceEeccCCCHH-------------HHHHHHhcCC-
Q 001277 250 EKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII-GSRLRQKKVLLVIDDVADVE-------------QLQNLARKRD- 314 (1109)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~- 314 (1109)
... . ...+.....+ ...-..++.+|+||+++... ....++..+.
T Consensus 89 ~~~--~-------------------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 147 (322)
T 3eie_A 89 SKW--M-------------------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG 147 (322)
T ss_dssp TTT--G-------------------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGG
T ss_pred hcc--c-------------------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcc
Confidence 000 0 0001111111 11223466799999997431 1233332221
Q ss_pred --CCCCCcEEEEEeCCchhhH---hhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC-chh
Q 001277 315 --WFGPGSKIVITTRDKQLLV---AHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL-PLA 388 (1109)
Q Consensus 315 --~~~~gs~IiiTTR~~~v~~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLa 388 (1109)
....+..||.||.....+. ...... .+.++..+.++..+++..++....... ..+....+++.+.|. +-.
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~~Rf~~--~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~d 223 (322)
T 3eie_A 148 VGNDSQGVLVLGATNIPWQLDSAIRRRFER--RIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSD 223 (322)
T ss_dssp GGTSCCCEEEEEEESCGGGSCHHHHHHCCE--EEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHH
T ss_pred ccccCCceEEEEecCChhhCCHHHHcccCe--EEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHH
Confidence 2234566666776543211 112333 788999999999999998875432211 234567788888774 445
Q ss_pred HHHHh
Q 001277 389 LTVLG 393 (1109)
Q Consensus 389 l~~l~ 393 (1109)
|..+.
T Consensus 224 i~~l~ 228 (322)
T 3eie_A 224 IAVVV 228 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 187
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.34 E-value=5e-06 Score=89.73 Aligned_cols=183 Identities=16% Similarity=0.172 Sum_probs=99.7
Q ss_pred cccccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 183 ILKELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
...+++|.+..++.|.+++.. +....+.+.|+|++|+|||++|+++++.....| +..+........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHHHHhhc
Confidence 346789999888877665431 112345688999999999999999999765432 221111111111
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH-----------------HHHHHHHhcCCC
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV-----------------EQLQNLARKRDW 315 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-----------------~~~~~l~~~~~~ 315 (1109)
. ...... ....+.......+.+|+||+++.. ..+..++.....
T Consensus 80 ~---~~~~~~-----------------~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 80 G---GLGAAR-----------------VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp T---THHHHH-----------------HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHT
T ss_pred c---ChhHHH-----------------HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC
Confidence 1 000000 111122222345789999999865 112333332221
Q ss_pred C--CCCcEEEEEeCCchhhHh-h----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch-
Q 001277 316 F--GPGSKIVITTRDKQLLVA-H----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL- 387 (1109)
Q Consensus 316 ~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL- 387 (1109)
. ..+..||.||........ . ... ..+.++..+.++..+++..++..... ..........+++.+.|.+-
T Consensus 140 ~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~--~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~ 216 (262)
T 2qz4_A 140 MGTTDHVIVLASTNRADILDGALMRPGRLD--RHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGA 216 (262)
T ss_dssp CCTTCCEEEEEEESCGGGGGSGGGSTTSCC--EEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHH
T ss_pred cCCCCCEEEEecCCChhhcCHHHhcCCcCC--eEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHH
Confidence 1 235566777765432211 1 222 37889999999999999887744322 12222234677888887754
Q ss_pred hHHHH
Q 001277 388 ALTVL 392 (1109)
Q Consensus 388 al~~l 392 (1109)
.|..+
T Consensus 217 ~l~~l 221 (262)
T 2qz4_A 217 DIANI 221 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.34 E-value=5.3e-06 Score=91.44 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=108.8
Q ss_pred HHHHHhhhc--cCCcccccccccchhhHHHHHhhhccc----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 169 IVNVISNKI--RTKPEILKELVGIDSRLEKLRFLIATE----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 169 iv~~i~~~l--~~~~~~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
+++.+...+ ..++....+++|.+..++.+...+... ....+.+.|+|++|+||||+|++++......|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 444554444 234455678999999999988776421 12346789999999999999999998764332
Q ss_pred cceEEeeechhhhcc-cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH------------
Q 001277 237 DGSTFLANVREKSEK-EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV------------ 303 (1109)
Q Consensus 237 ~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------ 303 (1109)
+..+....... .+......+. .+......++.+|+||+++..
T Consensus 83 ----~~i~~~~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~ 137 (297)
T 3b9p_A 83 ----LNISAASLTSKYVGDGEKLVRA---------------------LFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS 137 (297)
T ss_dssp ----EEEESTTTSSSSCSCHHHHHHH---------------------HHHHHHHTCSEEEEEETGGGTSBCC-----CCS
T ss_pred ----EEeeHHHHhhcccchHHHHHHH---------------------HHHHHHHcCCcEEEeccHHHhccccccCcchHH
Confidence 11111111110 0101111111 111122346779999999543
Q ss_pred -HHHHHHHhc---CCC--CCCCcEEEEEeCCchhh-Hh--hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHH
Q 001277 304 -EQLQNLARK---RDW--FGPGSKIVITTRDKQLL-VA--HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVEL 374 (1109)
Q Consensus 304 -~~~~~l~~~---~~~--~~~gs~IiiTTR~~~v~-~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~ 374 (1109)
.....++.. ... .+.+..||.||...... .. ..... .+.++..+.++..+++...+-...... ..+.
T Consensus 138 ~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~--~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~ 213 (297)
T 3b9p_A 138 RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTK--RVYVSLPDEQTRELLLNRLLQKQGSPL--DTEA 213 (297)
T ss_dssp HHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCE--EEECCCCCHHHHHHHHHHHHGGGSCCS--CHHH
T ss_pred HHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCe--EEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHH
Confidence 111222221 111 12345667777654311 11 12333 788888899998888887764322211 2345
Q ss_pred HHHHHHHhCCCch-hHHHHh
Q 001277 375 SKRVLKYAGGLPL-ALTVLG 393 (1109)
Q Consensus 375 ~~~i~~~~~GlPL-al~~l~ 393 (1109)
...+++.+.|.+- ++..+.
T Consensus 214 ~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 214 LRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHH
Confidence 6788888988875 555544
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.33 E-value=1e-05 Score=91.37 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=103.3
Q ss_pred cccccccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhc
Q 001277 181 PEILKELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSE 250 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 250 (1109)
+....+++|.+..++.|...+.. .....+-|.|+|++|+|||+||+++++.....| +..+......
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l~~ 122 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 122 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHHHS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHHhh
Confidence 34567899999999998877631 112234588999999999999999999875332 2211111100
Q ss_pred ccCChHHHHHHHHHHHhhccCcccccccccHHHHHH-HHcCCCCceEeccCCCHH-------------HHHHHHhcCC--
Q 001277 251 KEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS-RLRQKKVLLVIDDVADVE-------------QLQNLARKRD-- 314 (1109)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~-- 314 (1109)
.. . ...+.....+.. .-..++.+|+||+++... ....++..+.
T Consensus 123 ~~--------------~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~ 181 (355)
T 2qp9_X 123 KW--------------M-------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV 181 (355)
T ss_dssp CC------------------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHC
T ss_pred hh--------------c-------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcc
Confidence 00 0 001111111111 123567899999997532 1233322221
Q ss_pred -CCCCCcEEEEEeCCchhh-H--hhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC-chhH
Q 001277 315 -WFGPGSKIVITTRDKQLL-V--AHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL-PLAL 389 (1109)
Q Consensus 315 -~~~~gs~IiiTTR~~~v~-~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal 389 (1109)
....+..||.||...... . ...... .+.+...+.++..+++..++....... .......|++.+.|. +-.|
T Consensus 182 ~~~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl 257 (355)
T 2qp9_X 182 GNDSQGVLVLGATNIPWQLDSAIRRRFER--RIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDI 257 (355)
T ss_dssp C---CCEEEEEEESCGGGSCHHHHHTCCE--EEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHH
T ss_pred cccCCCeEEEeecCCcccCCHHHHcccCE--EEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHH
Confidence 113455666677644211 1 113333 788999999999999988774332111 134567788888884 4445
Q ss_pred HHHh
Q 001277 390 TVLG 393 (1109)
Q Consensus 390 ~~l~ 393 (1109)
..+.
T Consensus 258 ~~l~ 261 (355)
T 2qp9_X 258 AVVV 261 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 190
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.30 E-value=4.7e-06 Score=90.55 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=90.9
Q ss_pred cccccchhhHHHHHh-------hhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChH
Q 001277 185 KELVGIDSRLEKLRF-------LIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVV 256 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~-------~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 256 (1109)
..++|.+..++++.. .+. ......+.+.|+|++|+|||+||+++++.....| +.+. ... .-.+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~-~~~--~~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC-SPD--KMIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE-CGG--GCTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-CHH--HhcCCch
Confidence 356777766655544 222 1234567899999999999999999999754322 1111 111 0001000
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH------------HHHHHHHhcCCC---CCCCcE
Q 001277 257 SLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV------------EQLQNLARKRDW---FGPGSK 321 (1109)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------~~~~~l~~~~~~---~~~gs~ 321 (1109)
..... .....+......++.+|+||+++.. ..++.+...... .+....
T Consensus 107 ~~~~~-----------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 107 TAKCQ-----------------AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp HHHHH-----------------HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred HHHHH-----------------HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 00000 0111122222356789999998653 223444333222 233445
Q ss_pred EEEEeCCchhhHhhCCC-c-cceEEcCCCCH-HHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC
Q 001277 322 IVITTRDKQLLVAHEVD-E-EHIYNLEVLSN-DEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL 385 (1109)
Q Consensus 322 IiiTTR~~~v~~~~~~~-~-~~~~~l~~L~~-~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 385 (1109)
||.||............ . ...+++++++. ++..+++.+.. . . ..+....+++.+.|.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-F---KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-S---CHHHHHHHHHHHTTS
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-C---CHHHHHHHHHHhcCC
Confidence 67788776544331111 1 23789999988 66666655421 1 1 135567888888884
No 191
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=1.7e-06 Score=98.06 Aligned_cols=200 Identities=14% Similarity=0.144 Sum_probs=107.3
Q ss_pred cccccccccchhhHHHHHhhh-cccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeech-------------
Q 001277 181 PEILKELVGIDSRLEKLRFLI-ATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVR------------- 246 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~------------- 246 (1109)
|....+++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.++..+...-.+.+++....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 445578999999999999988 4332 233 899999999999999999986533222222111000
Q ss_pred -------h-hhcccCC-hHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCC
Q 001277 247 -------E-KSEKEGS-VVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDW 315 (1109)
Q Consensus 247 -------~-~~~~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~ 315 (1109)
. .....+. .....++++.++...... .... .+ ..+.+++-++|||+++.. +..+.+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc-----cccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 0 0000000 000112222222110000 0000 00 002346679999999764 223444433322
Q ss_pred CCCCcEEEEEeCCch-hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchH-HHHHHHHHHHhCCCchhHHHH
Q 001277 316 FGPGSKIVITTRDKQ-LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEY-VELSKRVLKYAGGLPLALTVL 392 (1109)
Q Consensus 316 ~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~-~~~~~~i~~~~~GlPLal~~l 392 (1109)
...+.++|++|.+.. +...... ....+++++++.++..+.+...+...... -. .+....|++.++|.+-.+..+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~s-R~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKS-QCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHh-hceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 345678888776542 2222111 11389999999999999998877432211 11 256788899999998755433
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.28 E-value=5.2e-06 Score=92.09 Aligned_cols=152 Identities=15% Similarity=0.116 Sum_probs=89.3
Q ss_pred ccccchhhHHHHHhhhccc-------------CCCeeEEEEEecCCchhHHHHHHHHHHHhcccc--c-eEEeeechhhh
Q 001277 186 ELVGIDSRLEKLRFLIATE-------------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD--G-STFLANVREKS 249 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~-~~~~~~~~~~~ 249 (1109)
.++|.+..++.|..++... ......+.|+|++|+|||++|+++++.+..... . .+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 5789888888877665411 234457899999999999999999987754321 1 12221111110
Q ss_pred cccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHc-CCCCceEeccCC-----------CHHHHHHHHhcCCCCC
Q 001277 250 EKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR-QKKVLLVIDDVA-----------DVEQLQNLARKRDWFG 317 (1109)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~-----------~~~~~~~l~~~~~~~~ 317 (1109)
... . ......+...+. .+.-+|+||+++ ..+.+..|...+....
T Consensus 112 ~~~--~----------------------g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~ 167 (309)
T 3syl_A 112 GQY--I----------------------GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR 167 (309)
T ss_dssp CSS--T----------------------TCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT
T ss_pred hhc--c----------------------cccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC
Confidence 000 0 000011111111 135699999997 4444555555444445
Q ss_pred CCcEEEEEeCCchhhHh--------hCCCccceEEcCCCCHHHHHHHHHHhhhc
Q 001277 318 PGSKIVITTRDKQLLVA--------HEVDEEHIYNLEVLSNDEALQLFSMKAFK 363 (1109)
Q Consensus 318 ~gs~IiiTTR~~~v~~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 363 (1109)
.+..||.||........ .... ..+++++++.++..+++...+..
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSRIA--HHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHHEE--EEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHhCC--eEEEcCCcCHHHHHHHHHHHHHH
Confidence 66788888864321110 0122 38999999999999999887743
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.25 E-value=1.7e-05 Score=88.09 Aligned_cols=185 Identities=12% Similarity=0.148 Sum_probs=103.5
Q ss_pred cccccccccchhhHHHHHhhhcc---------c-CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhc
Q 001277 181 PEILKELVGIDSRLEKLRFLIAT---------E-SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSE 250 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 250 (1109)
.....+++|.+..++.|.+.+.. + ....+-|.|+|++|+|||+||+++++..... .++..+......
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~~i~~~~l~~ 84 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS---TFFSISSSDLVS 84 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC---EEEEEECCSSCC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC---cEEEEEhHHHHh
Confidence 34457889999888888766531 1 1234678999999999999999999976211 112111111110
Q ss_pred c-cCChHHHHHHHHHHHhhccCcccccccccHHHHHH-HHcCCCCceEeccCCCH-------------HHHHHHHhcCCC
Q 001277 251 K-EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS-RLRQKKVLLVIDDVADV-------------EQLQNLARKRDW 315 (1109)
Q Consensus 251 ~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~-------------~~~~~l~~~~~~ 315 (1109)
. .+ ..+.....+.+ .-..++.+|+||+++.. .....++..+..
T Consensus 85 ~~~g----------------------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~ 142 (322)
T 1xwi_A 85 KWLG----------------------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 142 (322)
T ss_dssp SSCC----------------------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHC
T ss_pred hhhh----------------------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhc
Confidence 0 01 01111111111 12356789999999764 112333322221
Q ss_pred ---CCCCcEEEEEeCCchhh-Hh--hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC-chh
Q 001277 316 ---FGPGSKIVITTRDKQLL-VA--HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL-PLA 388 (1109)
Q Consensus 316 ---~~~gs~IiiTTR~~~v~-~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLa 388 (1109)
...+..||.||...... .. .+.+. .+.++..+.++..+++..++....... .......|++.+.|. +-.
T Consensus 143 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 143 VGVDNDGILVLGATNIPWVLDSAIRRRFEK--RIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGAD 218 (322)
T ss_dssp SSSCCTTEEEEEEESCTTTSCHHHHHTCCE--EEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHH
T ss_pred ccccCCCEEEEEecCCcccCCHHHHhhcCe--EEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHH
Confidence 23445566566543211 11 13333 789999999999999988764322111 234567888888887 444
Q ss_pred HHHHhh
Q 001277 389 LTVLGS 394 (1109)
Q Consensus 389 l~~l~~ 394 (1109)
|..+..
T Consensus 219 l~~l~~ 224 (322)
T 1xwi_A 219 ISIIVR 224 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.24 E-value=1.5e-05 Score=89.03 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=97.6
Q ss_pred ccccc-cchhhH--HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 184 LKELV-GIDSRL--EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 184 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
.++|| |..... ..+..+..........+.|+|++|+||||||+++++.....-...+++. . .....
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~~~ 78 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDFAQ 78 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHHHH
Confidence 45565 544332 3344444333324567899999999999999999997754411122332 1 12222
Q ss_pred HHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----HHHHHHhcCCC-CCCCcEEEEEeCCch-----
Q 001277 261 QLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----QLQNLARKRDW-FGPGSKIVITTRDKQ----- 330 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~----- 330 (1109)
.+...+.. .....+...+. ++-+|+|||++... ..+.+...+.. ...|.+||+||....
T Consensus 79 ~~~~~~~~----------~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 79 AMVEHLKK----------GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHH----------TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHc----------CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 22222221 01122233332 46799999996532 22222222110 134667888886432
Q ss_pred ----hhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchh
Q 001277 331 ----LLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLA 388 (1109)
Q Consensus 331 ----v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 388 (1109)
+....... .++++++ +.++..+++...+...... -..+....+++++ |..-.
T Consensus 148 l~~~L~sR~~~~--~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 148 VSDRLVSRFEGG--ILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp SCHHHHHHHHTS--EEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHH
T ss_pred hhhHhhhcccCc--eEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHH
Confidence 11112122 3799999 9999999999887543222 2235667788888 77654
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.22 E-value=2.7e-05 Score=90.55 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=107.3
Q ss_pred CcccccccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhh
Q 001277 180 KPEILKELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKS 249 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 249 (1109)
++....+++|.+..++.|...+.. .....+-|.|+|++|+|||+||+++++.... ..++..+...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~-- 203 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD-- 203 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH--
Confidence 444567899999999988876631 1123467999999999999999999997621 1112111111
Q ss_pred cccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH-HcCCCCceEeccCCCH-------------HHHHHHHhcCCC
Q 001277 250 EKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR-LRQKKVLLVIDDVADV-------------EQLQNLARKRDW 315 (1109)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~-------------~~~~~l~~~~~~ 315 (1109)
+. .... ...+.....+... -..++.+|+||+++.. .....++..+..
T Consensus 204 -----l~-------~~~~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 204 -----LV-------SKWL-------GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp ---------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred -----HH-------hhhc-------chHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence 10 0000 0111122222222 2356789999999764 234455554443
Q ss_pred C---CCCcEEEEEeCCchhh-Hh--hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC-chh
Q 001277 316 F---GPGSKIVITTRDKQLL-VA--HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL-PLA 388 (1109)
Q Consensus 316 ~---~~gs~IiiTTR~~~v~-~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLa 388 (1109)
. ..+..||.||...... .. ..... .+.+...+.++..++|..++..... .........|++.+.|. +-.
T Consensus 265 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~--~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgad 340 (444)
T 2zan_A 265 VGVDNDGILVLGATNIPWVLDSAIRRRFEK--RIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGAD 340 (444)
T ss_dssp SSCCCSSCEEEEEESCGGGSCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHH
T ss_pred cccCCCCEEEEecCCCccccCHHHHhhcce--EEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHH
Confidence 2 3456677677654321 11 12333 7889999999999999887643221 11234567788888884 445
Q ss_pred HHHHh
Q 001277 389 LTVLG 393 (1109)
Q Consensus 389 l~~l~ 393 (1109)
|..+.
T Consensus 341 l~~l~ 345 (444)
T 2zan_A 341 ISIIV 345 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.20 E-value=1.7e-05 Score=90.37 Aligned_cols=203 Identities=15% Similarity=0.060 Sum_probs=105.9
Q ss_pred ccccccchhhHHHHHhh---hcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 184 LKELVGIDSRLEKLRFL---IATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~---L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
...+||++..++.+..+ +..+....+.+.|+|++|+|||++|+++++.+....+. +.+....-...... ......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~-~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMS-KTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSC-HHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccc-hhHHHH
Confidence 56899999987775443 33333334689999999999999999999988643221 11111110111111 222222
Q ss_pred HHHHHHhhc----------------------c---Cccccc----ccccHHHHHHHH-----cCC----CCceEeccCCC
Q 001277 261 QLLSDLLKL----------------------A---DISIWN----VDDGINIIGSRL-----RQK----KVLLVIDDVAD 302 (1109)
Q Consensus 261 ~ll~~l~~~----------------------~---~~~~~~----~~~~~~~l~~~L-----~~k----~~LlVLDdv~~ 302 (1109)
+.+...... . ...... .......+.... .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 222221000 0 000000 111111111111 123 35999999976
Q ss_pred H--HHHHHHHhcCCCCCCCcEEEEEeCC------------c-hhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCC
Q 001277 303 V--EQLQNLARKRDWFGPGSKIVITTRD------------K-QLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP 367 (1109)
Q Consensus 303 ~--~~~~~l~~~~~~~~~gs~IiiTTR~------------~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 367 (1109)
. +..+.+...+...... .++++|.. . .+..... .....+.+++++.++..+++..++-....
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~-sR~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLL-DRLLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHH-TTEEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHH-hhccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 4 3455555544433333 44444431 1 1111110 11125899999999999999988754332
Q ss_pred CchHHHHHHHHHHHhC-CCchhHHHH
Q 001277 368 MGEYVELSKRVLKYAG-GLPLALTVL 392 (1109)
Q Consensus 368 ~~~~~~~~~~i~~~~~-GlPLal~~l 392 (1109)
.-..+..+.+++++. |.|-.+..+
T Consensus 278 -~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 278 -EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp -CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 223466788888888 888765544
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.19 E-value=1.5e-05 Score=91.31 Aligned_cols=185 Identities=16% Similarity=0.137 Sum_probs=102.2
Q ss_pred CcccccccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhh
Q 001277 180 KPEILKELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKS 249 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 249 (1109)
.+.....++|.+..++.|..++.. .....+-|.|+|.+|+|||+||++++++....| +..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhh
Confidence 344567899999999999887731 112246789999999999999999988754322 222111110
Q ss_pred cccCChHHHHHHHHHHHhhccCcccccccccHHHHH-HHHcCCCCceEeccCCCH-------------HHHHHHHhcC--
Q 001277 250 EKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIG-SRLRQKKVLLVIDDVADV-------------EQLQNLARKR-- 313 (1109)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~~-- 313 (1109)
... . .........+. ..-..++.+|+||+++.. .....++..+
T Consensus 186 ~~~---~------------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 244 (389)
T 3vfd_A 186 SKY---V------------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG 244 (389)
T ss_dssp ---------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH
T ss_pred ccc---c------------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc
Confidence 000 0 00001111111 112345679999999654 1122222211
Q ss_pred --CCCCCCcEEEEEeCCchhh-Hh--hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCch-
Q 001277 314 --DWFGPGSKIVITTRDKQLL-VA--HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPL- 387 (1109)
Q Consensus 314 --~~~~~gs~IiiTTR~~~v~-~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL- 387 (1109)
........||.||.....+ .. ..... .+.+...+.++..+++...+-...... ..+....+++.+.|..-
T Consensus 245 ~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~--~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~ 320 (389)
T 3vfd_A 245 VQSAGDDRVLVMGATNRPQELDEAVLRRFIK--RVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGS 320 (389)
T ss_dssp HC-----CEEEEEEESCGGGCCHHHHTTCCE--EEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHH
T ss_pred ccccCCCCEEEEEecCCchhcCHHHHcCcce--EEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHH
Confidence 1112344566666543221 11 12222 688999999999999988774432221 23456788888888654
Q ss_pred hHHHHh
Q 001277 388 ALTVLG 393 (1109)
Q Consensus 388 al~~l~ 393 (1109)
+|..+.
T Consensus 321 ~l~~L~ 326 (389)
T 3vfd_A 321 DLTALA 326 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 198
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.12 E-value=6.9e-06 Score=91.77 Aligned_cols=180 Identities=11% Similarity=0.135 Sum_probs=103.0
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQK 260 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1109)
|....+++|.+..++.+..++..+ ....++.+.|++|+|||++|+++++.+...| +.+. ....+ ... .+
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~-----~~~~~-~~~-i~ 90 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVN-----GSDCK-IDF-VR 90 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEE-----TTTCC-HHH-HH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEc-----ccccC-HHH-HH
Confidence 345578999999999999998743 2346788889999999999999998774321 1221 11111 111 11
Q ss_pred HHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH---HHHHHHhcCCCCCCCcEEEEEeCCchhh-HhhC
Q 001277 261 QLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE---QLQNLARKRDWFGPGSKIVITTRDKQLL-VAHE 336 (1109)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~~ 336 (1109)
..+.+...... ..+++-+|||||++... ..+.|...+.....+.++|+||....-. ....
T Consensus 91 ~~~~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 91 GPLTNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp THHHHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred HHHHHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 11222111000 12366799999998764 3444444333234567888888764311 0000
Q ss_pred CCccceEEcCCCCHHHHHHHH-------HHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 337 VDEEHIYNLEVLSNDEALQLF-------SMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 337 ~~~~~~~~l~~L~~~ea~~Lf-------~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
.....+++++++.+|..+++ ...+....... ...+....+++.++|.+-.+
T Consensus 155 -sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 155 -SRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp -HHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHH
T ss_pred -hhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHH
Confidence 01127999999988854332 22222111111 11256778888898887643
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.09 E-value=3.9e-05 Score=84.42 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=90.9
Q ss_pred ccccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhc
Q 001277 182 EILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSE 250 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 250 (1109)
....+++|.+..+++|.+.+.. +-...+.|.|+|++|+|||+||+++++.....| +..+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~----i~v~------ 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIK------ 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE----EEEC------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE----EEEE------
Confidence 3456799999988888777642 123456799999999999999999998764322 1111
Q ss_pred ccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHHH----------------HHHHHhcCC
Q 001277 251 KEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQ----------------LQNLARKRD 314 (1109)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~----------------~~~l~~~~~ 314 (1109)
...+ ....... ........+.......+.+|+||+++.... ...++..+.
T Consensus 82 ----~~~l----~~~~~g~------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 82 ----GPEL----LTMWFGE------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp ----HHHH----HHHHHTT------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred ----hHHH----HhhhcCc------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 1111 1111110 111112222333345678999999975321 233332221
Q ss_pred C--CCCCcEEEEEeCCchhhH-hh----CCCccceEEcCCCCHHHHHHHHHHhhh
Q 001277 315 W--FGPGSKIVITTRDKQLLV-AH----EVDEEHIYNLEVLSNDEALQLFSMKAF 362 (1109)
Q Consensus 315 ~--~~~gs~IiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af 362 (1109)
. ...+..||.||....... .. .... .+.++..+.++..+++..++-
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~--~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ--LIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHHT
T ss_pred cccCCCCEEEEEecCCccccChHHhcCCccce--EEecCCcCHHHHHHHHHHHHc
Confidence 1 124567777776543221 11 2333 789999999999999877764
No 200
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.08 E-value=0.00014 Score=83.45 Aligned_cols=120 Identities=9% Similarity=0.115 Sum_probs=54.1
Q ss_pred ceEEEecCCCCCCcccccccCCcCCcceeecccc---CCccccc-cccccCCCcEEeCCCCcCCcccc-ccccccCcCcE
Q 001277 551 LKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRT---TIEELPL-SIQHLTGLVLLNLKDCKNLKSLS-HTLRRLQCLKN 625 (1109)
Q Consensus 551 L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~---~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~ 625 (1109)
|+.+.+... ++.+....+..+.+|+.+.+..+ .++.+.. .+..+.+|+.+.+.. .+..++ ..+..+.+|+.
T Consensus 66 L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 66 LTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTTCTTCCE
T ss_pred CEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhhhhccccc
Confidence 555555432 44444444555556666665533 2334432 344455555544432 122222 23445556666
Q ss_pred EEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeee
Q 001277 626 LTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLN 676 (1109)
Q Consensus 626 L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 676 (1109)
+.+... ....-...+..+.+|+.+.+..+ +..+....-...+|+.+.+.
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEEC
T ss_pred ccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEEC
Confidence 666432 11112234455556666655432 33333322223455555554
No 201
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.08 E-value=8.5e-06 Score=82.58 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=41.7
Q ss_pred cccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 183 ILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
....++||+.+++.+...+.. ...+.+.|+|++|+||||||+++++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999988864 23466789999999999999999987754
No 202
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.00037 Score=79.50 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=34.2
Q ss_pred CCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch-hhhccCCCCceec
Q 001277 780 SLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDL 840 (1109)
Q Consensus 780 ~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L 840 (1109)
.+.++++|+.+.+.++.+.. .-...+.++.+|+.+.|..+ ++.|+. .+..|++|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 35667777777777665532 11234666777777777543 555553 3455555555544
No 203
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.02 E-value=8.9e-06 Score=94.28 Aligned_cols=178 Identities=21% Similarity=0.267 Sum_probs=104.0
Q ss_pred cccccccccchhhH---HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 181 PEILKELVGIDSRL---EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
|.....+||.+..+ ..|...+..+ ..+.+.|+|++|+||||||+.+++.....|.. +. ....+ ...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-----a~~~~-~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-----AVTSG-VKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-----TTTCC-HHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-----eccCC-HHH
Confidence 44567899999888 6777777543 34779999999999999999999977544321 11 01111 222
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH--HHHHHHhcCCCCCCCcEEEE-EeCCch--hh
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE--QLQNLARKRDWFGPGSKIVI-TTRDKQ--LL 332 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Iii-TTR~~~--v~ 332 (1109)
+ +.++.... .....+++.+|+||+++... +.+.|+..+.. ....+|. ||.+.. +.
T Consensus 91 i-r~~~~~a~-----------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 91 I-REAIERAR-----------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELN 150 (447)
T ss_dssp H-HHHHHHHH-----------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSC
T ss_pred H-HHHHHHHH-----------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccC
Confidence 1 11111110 01113577899999997653 33444433321 2234443 555542 11
Q ss_pred HhhCCCccceEEcCCCCHHHHHHHHHHhhhcCC-----CCCchHHHHHHHHHHHhCCCchhHH
Q 001277 333 VAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTR-----QPMGEYVELSKRVLKYAGGLPLALT 390 (1109)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-----~~~~~~~~~~~~i~~~~~GlPLal~ 390 (1109)
.... ....++.+++++.++..+++.+.+-... ....-..+..+.++++++|.+-.+.
T Consensus 151 ~aL~-sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 151 SALL-SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHH-TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHh-CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 1111 1123789999999999999988765311 1112234677888999999887554
No 204
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00016 Score=81.08 Aligned_cols=174 Identities=17% Similarity=0.242 Sum_probs=100.4
Q ss_pred ccccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhc
Q 001277 182 EILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSE 250 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 250 (1109)
....++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +.....+...
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~s 220 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQ 220 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhc
Confidence 4457889999999988776642 223456789999999999999999999876554 2221111111
Q ss_pred cc-CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----------------HHHHHHhcC
Q 001277 251 KE-GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----------------QLQNLARKR 313 (1109)
Q Consensus 251 ~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~ 313 (1109)
.. +.-....+.++ ...-...+++|++|+++... .+..++..+
T Consensus 221 k~vGese~~vr~lF---------------------~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 279 (405)
T 4b4t_J 221 KYIGEGSRMVRELF---------------------VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQL 279 (405)
T ss_dssp SSTTHHHHHHHHHH---------------------HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH---------------------HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 11 10111111111 11123568899999986421 133343333
Q ss_pred CCC--CCCcEEEEEeCCchhh-Hh----hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCC-chHHHHHHHHHHHhCCC
Q 001277 314 DWF--GPGSKIVITTRDKQLL-VA----HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGGL 385 (1109)
Q Consensus 314 ~~~--~~gs~IiiTTR~~~v~-~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~Gl 385 (1109)
+.+ ..+..||.||.....+ .+ -+.+. .++++..+.++..++|..+.-+-.... .+ ...+++.+.|.
T Consensus 280 Dg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~--~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 280 DGFETSKNIKIIMATNRLDILDPALLRPGRIDR--KIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp HTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCC--EEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred hccCCCCCeEEEeccCChhhCCHhHcCCCcCce--EEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 222 2344566677544321 11 23444 899999999999999987764322111 12 35566777765
Q ss_pred c
Q 001277 386 P 386 (1109)
Q Consensus 386 P 386 (1109)
-
T Consensus 354 S 354 (405)
T 4b4t_J 354 S 354 (405)
T ss_dssp C
T ss_pred C
Confidence 3
No 205
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.93 E-value=0.00031 Score=78.44 Aligned_cols=262 Identities=18% Similarity=0.201 Sum_probs=134.5
Q ss_pred cccccccchhhHHHHHhhhccc---CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHH
Q 001277 183 ILKELVGIDSRLEKLRFLIATE---SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
....++|.+..++.+...+..+ ......+.|+|++|.||||||+.++..+...+. ... .... .. ...+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~s-g~~~--~~-~~~l- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTS-GPVL--VK-QGDM- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEE-TTTC--CS-HHHH-
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe-chHh--cC-HHHH-
Confidence 4567889888888877666532 233467899999999999999999997754321 110 0000 00 0000
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCC--------C----------CC
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWF--------G----------PG 319 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~--------~----------~g 319 (1109)
..+...+ .++-++++|+++.. ...+.+....... + +.
T Consensus 94 ----------------------~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 94 ----------------------AAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ----------------------HHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred ----------------------HHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 0001111 23446778887542 2233332211000 0 11
Q ss_pred cEEE-EEeCCchhhHhhCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHhhhc--
Q 001277 320 SKIV-ITTRDKQLLVAHEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFL-- 396 (1109)
Q Consensus 320 s~Ii-iTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L-- 396 (1109)
..++ .|++...+.......-.....+++.+.++-.+++.+.+-... .....+.+..|++.+.|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 2222 344443322211111112689999999999999988764322 12234678899999999997543332211
Q ss_pred ----CC---CCHHHHHHHHHHhhcCCCChhHHHHHhhhcCCcHHHHHHhhhhhcccCCC--CHHHHHHHHHhCCCCcccc
Q 001277 397 ----NG---RSVDLWRSTLKRLKKEPPNRIINILQISFDGLQDLEKKIFLDVACFFKSW--DRDHVEKILEGCGFSPVIG 467 (1109)
Q Consensus 397 ----~~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~~~~~~~~ 467 (1109)
.+ -+.+..+.+++.+.. .-.+++...+.++..++-.+++- ..+.+..... ... ..
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~---~~~-~t 292 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLG---VEA-DT 292 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHT---SCH-HH
T ss_pred HHHHcCCCCcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhC---CCc-ch
Confidence 11 133444444443321 11356665555554444333322 2333333322 121 11
Q ss_pred hH-----HhhhccCeeEeCCCeEehhHHHHHH
Q 001277 468 IE-----VLIEKSLLTVDDGNRLWMHDLLQEL 494 (1109)
Q Consensus 468 l~-----~L~~~sLi~~~~~~~~~mHdlv~~~ 494 (1109)
++ .|...++|+....++.....-.+.+
T Consensus 293 ~~~~~~~~l~~~g~i~~~~~gr~~~~~~~~~~ 324 (334)
T 1in4_A 293 LSEVYEPYLLQAGFLARTPRGRIVTEKAYKHL 324 (334)
T ss_dssp HHHHTHHHHHHTTSEEEETTEEEECHHHHHHT
T ss_pred HHHHHHHHHHHcCCeecccccHHhhHHHHHHh
Confidence 22 6888999998877766554444433
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.89 E-value=4e-05 Score=89.70 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=99.7
Q ss_pred ccccccchhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 184 LKELVGIDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
...++|.+..+++|.+++... ....+-|.|+|++|+|||++|+++++..... ++..+........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~----fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE----EEEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC----EEEEEchHhhhhh
Confidence 457999999999998877532 2345678999999999999999998876322 2222222211110
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH-------------HHHHHHHhcCCC--CC
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV-------------EQLQNLARKRDW--FG 317 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~~~~--~~ 317 (1109)
. ... .......+.....+++.+|+||+++.. .....|+..+.. ..
T Consensus 279 ~--g~~------------------~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 279 A--GES------------------ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp T--THH------------------HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred c--chh------------------HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC
Confidence 0 000 001112222333456789999998321 112233322221 12
Q ss_pred CCcEEEEEeCCchh-hHhh----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCC-chhHHH
Q 001277 318 PGSKIVITTRDKQL-LVAH----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGL-PLALTV 391 (1109)
Q Consensus 318 ~gs~IiiTTR~~~v-~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~ 391 (1109)
.+.+||.||..... .... .... .+.+...+.++..+++..++.......+ .....++..+.|. +-.|..
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~--~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDR--EVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCce--EEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHH
Confidence 34566667765422 1111 2333 7899999999999999887643221111 1124556666664 444444
Q ss_pred H
Q 001277 392 L 392 (1109)
Q Consensus 392 l 392 (1109)
+
T Consensus 414 L 414 (489)
T 3hu3_A 414 L 414 (489)
T ss_dssp H
T ss_pred H
Confidence 4
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.88 E-value=0.00012 Score=78.61 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=39.0
Q ss_pred cccccccccchhhHHHHHhhhcc---c-------CCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 181 PEILKELVGIDSRLEKLRFLIAT---E-------SSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
+....+++|.+..++++...+.. . ....+-+.|+|++|+||||||+++++....
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 34457889999888877655431 0 112345889999999999999999987643
No 208
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.87 E-value=0.00012 Score=85.76 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=83.1
Q ss_pred ccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc------cceEEeeechhhhcccCCh
Q 001277 182 EILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 255 (1109)
...+.+|||+.+++.+...+... ...-+.|+|.+|+|||++|+.+++.+...+ ...++..+.. .
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--~------ 246 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--T------ 246 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--c------
Confidence 34567999999999999988643 234567999999999999999999875432 1122222111 0
Q ss_pred HHHHHHHHHHHhhccCccccccccc-HHHHHHHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhhHh
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDG-INIIGSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVA 334 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~-~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 334 (1109)
... ...+.. ...+...-..++.+|++| ...+....|...+. ....++|.+|........
T Consensus 247 ---------~~~-------g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 247 ---------KYR-------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKY 306 (468)
T ss_dssp ----------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred ---------ccc-------chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHH
Confidence 000 011111 222222223567899999 22333334444432 223566666654431111
Q ss_pred hCCC-----ccceEEcCCCCHHHHHHHHHHhh
Q 001277 335 HEVD-----EEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 335 ~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
...+ ...++.++..+.++..+++...+
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1111 11269999999999999998765
No 209
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.86 E-value=0.00012 Score=81.77 Aligned_cols=183 Identities=14% Similarity=0.078 Sum_probs=99.8
Q ss_pred hhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhc-c
Q 001277 192 SRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKL-A 270 (1109)
Q Consensus 192 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~ 270 (1109)
...+.+...+..+ .-.+.+.++|++|+||||+|+.+++.+....... ....+ .-.....+....... .
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---------~~~c~-~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---------HKSCG-HCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---------TBCCS-CSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---------CCCCC-CCHHHHHHhcCCCCCEE
Confidence 3445555555432 2345788999999999999999998765332110 00000 000000000000000 0
Q ss_pred Ccccc--cccccHH---HHHHHH-----cCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhCC
Q 001277 271 DISIW--NVDDGIN---IIGSRL-----RQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHEV 337 (1109)
Q Consensus 271 ~~~~~--~~~~~~~---~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~ 337 (1109)
..... .....++ .+.+.+ .+++-++|+|+++.. +..+.|+..+....+++.+|++|.+.. +......
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 00000 0001111 122222 245678999999764 445666665554456778787777653 3222221
Q ss_pred CccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHHHh
Q 001277 338 DEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLG 393 (1109)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 393 (1109)
. ...+++.+++.++..+++...+ . -..+.+..+++.++|.|..+..+.
T Consensus 158 R-c~~~~~~~~~~~~~~~~L~~~~-----~--~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 158 R-CRLHYLAPPPEQYAVTWLSREV-----T--MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp T-SEEEECCCCCHHHHHHHHHHHC-----C--CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred c-ceeeeCCCCCHHHHHHHHHHhc-----C--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2379999999999999998775 1 112456789999999997665443
No 210
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.84 E-value=0.0018 Score=73.62 Aligned_cols=282 Identities=10% Similarity=0.133 Sum_probs=134.0
Q ss_pred CCCCCCCCcceEEEecCCCCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCcccccccccc
Q 001277 542 LPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRL 620 (1109)
Q Consensus 542 l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l 620 (1109)
.|......+|+.+.+... ++.+....+..+.+|+.+.+..+ ++.+.. .+.++ +|+.+.+.. .+..++...-..
T Consensus 39 ~~~~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~ 112 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG 112 (379)
T ss_dssp STTGGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT
T ss_pred ccccccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceecc
Confidence 344445556777776542 55554445566667777777532 555544 23333 455555432 233333322223
Q ss_pred CcCcEEEecCCCCCCcccc-cccCCCCCcEEeccCccCcccC-CcccCCCCCcEEeeeccCCCcc------------cCC
Q 001277 621 QCLKNLTLSGCSKLKKFPE-SLGSMKDLMELFLDGTSIAEVP-SSIELLTGLQLLNLNNCSNLVR------------LPS 686 (1109)
Q Consensus 621 ~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~------------lp~ 686 (1109)
.+|+.+.+.++ +..+.. .+.+. +|+.+.+.. .+..+. ..+..+.+|+.+.+........ ...
T Consensus 113 ~~L~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 113 TDLDDFEFPGA--TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred CCcccccCCCc--cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceec
Confidence 35666666542 122221 12222 333333322 122221 2233444555554443221110 001
Q ss_pred CCCCCCCCcEEEecCCCCCcccCcccCCCCCccEEecCCCcccCC-CccccccCCCcEEEccCCCCCCCCCCcccccccc
Q 001277 687 CINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFN 765 (1109)
Q Consensus 687 ~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~ 765 (1109)
.+.....+..+.+.... .......+....+|+.+.+..+ +..+ ...+..+.+|+.+.+..+-
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v--------------- 251 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNV--------------- 251 (379)
T ss_dssp ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTC---------------
T ss_pred cccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCc---------------
Confidence 11122223333222211 0011122333445555555433 2222 2334455566666554321
Q ss_pred cccccCCCcccc-CCCCCCCCCCCEEecCCCCCCCCCcc-cccCCCCCCCEEeCCCCCCcccch-hhhccCCCCceeccC
Q 001277 766 LMGQRSYPVALM-LPSLSGLHSLSKLDLSDCGLGEGAIP-NDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLED 842 (1109)
Q Consensus 766 ~l~~~~~~~~~l-~~~l~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~ 842 (1109)
..+ ...+.++.+|+.+.+..+ +.. ++ ..+..+++|+.+.+.++.++.|+. .+..+++|+.+.|..
T Consensus 252 ---------~~I~~~aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 252 ---------TSIGSFLLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp ---------CEECTTTTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ---------cEeCccccceeehhcccccccc-cee--ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 011 234677888999988654 311 32 356789999999999999998874 577888888888742
Q ss_pred CcCcCcCCCCCCCcceEeccCCccccccc
Q 001277 843 CKRLQSMPQLPSNLYEVQVNGCASLVTLS 871 (1109)
Q Consensus 843 c~~L~~lp~lp~~L~~L~~~~C~~L~~l~ 871 (1109)
.++.|+.- -..+|.+|+++.
T Consensus 320 --~l~~I~~~-------aF~~C~~L~~i~ 339 (379)
T 4h09_A 320 --ALKTIQVY-------AFKNCKALSTIS 339 (379)
T ss_dssp --TCCEECTT-------TTTTCTTCCCCC
T ss_pred --cccEEHHH-------HhhCCCCCCEEE
Confidence 13333211 134666666654
No 211
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=0.00012 Score=82.11 Aligned_cols=184 Identities=14% Similarity=0.207 Sum_probs=104.6
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEeeechhhhcccCChHHHH
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVREKSEKEGSVVSLQ 259 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1109)
|.....++|.+..++.|...+..+ +...+.++|++|+||||+|+.++..+... +...+.-.+. +...+ ...+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~-~~~ir 94 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRG-IDVVR 94 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCS-HHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---ccccc-HHHHH
Confidence 344567889998888888887643 23338999999999999999999876432 1111111111 11111 22111
Q ss_pred HHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCch-hhHhhC
Q 001277 260 KQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDKQ-LLVAHE 336 (1109)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~ 336 (1109)
.....+..... .+.+.+-++|+|+++.. +..+.|...+.......++|++|.... +.....
T Consensus 95 -~~i~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 95 -NQIKDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp -THHHHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 11111110000 01234668999998653 334444443333345677777776542 211111
Q ss_pred CCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhH
Q 001277 337 VDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLAL 389 (1109)
Q Consensus 337 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 389 (1109)
. ....+++.+++.++..+.+...+-..... -..+..+.+++.++|.+--+
T Consensus 159 s-R~~~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 159 S-QCTRFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp T-TSEEEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHH
T ss_pred h-hceeEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 1 11278999999999999888766322211 22356778899999988744
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=7.3e-05 Score=85.21 Aligned_cols=175 Identities=18% Similarity=0.229 Sum_probs=99.3
Q ss_pred CcccccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhh
Q 001277 180 KPEILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREK 248 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 248 (1109)
+.....++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +.......
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhh
Confidence 444567899999999988766431 223467899999999999999999999876543 22222221
Q ss_pred hccc-CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----------------HHHHHHh
Q 001277 249 SEKE-GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----------------QLQNLAR 311 (1109)
Q Consensus 249 ~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~ 311 (1109)
.... +......+.++. ..-...+++|++|+++... .+..++.
T Consensus 252 ~~~~vGese~~ir~lF~---------------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFA---------------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp CSSCSSHHHHHHHHHHH---------------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHH---------------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 1111 101111111111 1113468899999985321 1233444
Q ss_pred cCCCCC--CCcEEEEEeCCchhhH-hh----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCC-chHHHHHHHHHHHhC
Q 001277 312 KRDWFG--PGSKIVITTRDKQLLV-AH----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAG 383 (1109)
Q Consensus 312 ~~~~~~--~gs~IiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~ 383 (1109)
.++.+. .+..||.||.....+. +. +.+ ..++++..+.++..++|..++-+-.... -+ ...+++.+.
T Consensus 311 ~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD--~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~ 384 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLD--RKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTD 384 (434)
T ss_dssp HHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEE--EEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCS
T ss_pred HhhccCCCCCEEEEEeCCCchhcCHhHhcCCcee--EEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCC
Confidence 433332 3445566776543222 11 223 3789999999999999987764322111 12 345666666
Q ss_pred CC
Q 001277 384 GL 385 (1109)
Q Consensus 384 Gl 385 (1109)
|.
T Consensus 385 G~ 386 (434)
T 4b4t_M 385 EF 386 (434)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 213
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.81 E-value=0.0009 Score=76.66 Aligned_cols=265 Identities=11% Similarity=0.176 Sum_probs=153.4
Q ss_pred CCCCCcceEEEecCC--CCCCcccccccCCcCCcceeeccccCCccccc-cccccCCCcEEeCCCCcCCcccc-cccccc
Q 001277 545 KISMKSLKTLVLSGC--LKLTKKCLEFAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLS-HTLRRL 620 (1109)
Q Consensus 545 ~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l 620 (1109)
+.+|.+|+.+.+..+ ..++.+....+..+.+|+.+.+..+ ++.++. .+..+.+|+.+.+... +..++ ..+..+
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c 159 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYC 159 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceecc
Confidence 667899999999765 2366664455666777888777643 555544 5678889999998652 33333 356778
Q ss_pred CcCcEEEecCCCCCCcccccccCCCCCcEEeccCccCcccCCcccCCCCCcEEeeeccCCCcccCCCC------------
Q 001277 621 QCLKNLTLSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPSSIELLTGLQLLNLNNCSNLVRLPSCI------------ 688 (1109)
Q Consensus 621 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i------------ 688 (1109)
.+|+.+.+.++ +..+....-...+|+.+.+..+...--...+..+.+|.......... ..+...+
T Consensus 160 ~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 236 (394)
T 4gt6_A 160 YSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESY-PAIDNVLYEKSANGDYALI 236 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSS-CBSSSCEEEECTTSCEEEE
T ss_pred cccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccc-ccccceeeccccccccccc
Confidence 88999988753 33443332234567777775443322233455666666665443211 1111110
Q ss_pred --CCCCCCcEEEecCCCCCccc-CcccCCCCCccEEecCCCcccCCCccccccCCCcEEEccCCCCCCCCCCcccccccc
Q 001277 689 --NGLRSLKTLNLSGCSKLQNV-PETLGQVESLEELDISGTAIRRPPSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFN 765 (1109)
Q Consensus 689 --~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~~~i~~~p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~ 765 (1109)
.....+..+.+.. .+..+ ...+..+.+|+.+.+..+...--...+.++++|+.+.+...-
T Consensus 237 ~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i--------------- 299 (394)
T 4gt6_A 237 RYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRI--------------- 299 (394)
T ss_dssp ECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC---------------
T ss_pred ccccccccceEEcCC--cceEcccceeeecccccEEecccccceecCcccccccccccccCCCcc---------------
Confidence 0111222222211 01111 123556677777777554332224455667777777774311
Q ss_pred cccccCCCcccc-CCCCCCCCCCCEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccch-hhhccCCCCceeccCC
Q 001277 766 LMGQRSYPVALM-LPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPA-SINSLFNLGQLDLEDC 843 (1109)
Q Consensus 766 ~l~~~~~~~~~l-~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~c 843 (1109)
..+ ...|.++.+|+.++|..+ +.. .-...+..+.+|+.+.|..+ ++.++. .+.+|++|+.+++.++
T Consensus 300 ---------~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 300 ---------TELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp ---------CEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ---------cccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 011 234778889999998754 311 11345778899999999644 777764 5788889999988765
Q ss_pred c
Q 001277 844 K 844 (1109)
Q Consensus 844 ~ 844 (1109)
.
T Consensus 368 ~ 368 (394)
T 4gt6_A 368 R 368 (394)
T ss_dssp H
T ss_pred e
Confidence 3
No 214
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00027 Score=80.34 Aligned_cols=171 Identities=17% Similarity=0.218 Sum_probs=97.1
Q ss_pred ccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc-
Q 001277 184 LKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK- 251 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~- 251 (1109)
..++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +..........
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhccc
Confidence 45789999999988776531 223467899999999999999999999876543 22211111111
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----------------HHHHHHhcCCC
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----------------QLQNLARKRDW 315 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~ 315 (1109)
.+.-....+.+ ....-...+++|++|+++... .+..++..+..
T Consensus 284 vGesek~ir~l---------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 284 VGEGARMVREL---------------------FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp SSHHHHHHHHH---------------------HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHH---------------------HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 11011111111 111223568899999986421 12223322222
Q ss_pred C--CCCcEEEEEeCCchhh-Hh----hCCCccceEEcCCCCHHHHHHHHHHhhhcCCCCC-chHHHHHHHHHHHhCCC
Q 001277 316 F--GPGSKIVITTRDKQLL-VA----HEVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGGL 385 (1109)
Q Consensus 316 ~--~~gs~IiiTTR~~~v~-~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~Gl 385 (1109)
+ ..+..||.||.....+ .+ -+.+. .++++..+.++..++|..++-+-.... -+ ...|++.+.|.
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~--~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDR--KVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCE--EECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccE--EEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 2 2334456666543321 11 13444 899999999999999987764322111 12 24566677665
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00023 Score=81.21 Aligned_cols=173 Identities=18% Similarity=0.304 Sum_probs=99.2
Q ss_pred cccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 183 ILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
...++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +..........
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccc
Confidence 356788999999888776642 223457899999999999999999999876543 22222221111
Q ss_pred c-CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH----------------HHHHHHhcCC
Q 001277 252 E-GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE----------------QLQNLARKRD 314 (1109)
Q Consensus 252 ~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~~~ 314 (1109)
. +......+. .....-...+.+|++|+++... .+..++..++
T Consensus 255 ~~Gese~~ir~---------------------~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 255 YIGESARIIRE---------------------MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp SSSHHHHHHHH---------------------HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH---------------------HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 1 100111111 1111223578999999996420 1333333332
Q ss_pred CC--CCCcEEEEEeCCchhhHh-h----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCC-CchHHHHHHHHHHHhCCCc
Q 001277 315 WF--GPGSKIVITTRDKQLLVA-H----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQP-MGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 315 ~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlP 386 (1109)
.+ ..+..||.||.....+.. . ..+ ..++++..+.++..++|..+.-+-... ..+ ...+++.+.|.-
T Consensus 314 g~~~~~~vivI~ATNrp~~LDpAllRpGRfD--~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 314 GFDNLGQTKIIMATNRPDTLDPALLRPGRLD--RKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSSCTTSSEEEEEESSTTSSCTTTTSTTSEE--EEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred cccCCCCeEEEEecCCchhhCHHHhCCCccc--eeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 12 235567777765433221 1 122 378999999999999998776432221 112 345666666653
No 216
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.75 E-value=8.4e-05 Score=74.90 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+.+.|+|++|+||||||+++++.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999875
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=4.5e-06 Score=84.78 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=34.9
Q ss_pred CCCCCEEecCCCCCCCCC---cccccCCCCCCCEEeC--CCCCCcc-----cchhhhccCCCCceeccCC
Q 001277 784 LHSLSKLDLSDCGLGEGA---IPNDIGNLCSLKQLNL--SQNNFVT-----LPASINSLFNLGQLDLEDC 843 (1109)
Q Consensus 784 l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~L--s~n~l~~-----lp~~~~~l~~L~~L~L~~c 843 (1109)
.++|++|+|++|.+++.. +...+...++|++|+| ++|.+.. +...+...++|++|+|++|
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 345666666666664322 3344555566777777 6666652 4445555666777776655
No 218
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.71 E-value=7.7e-05 Score=72.20 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 186 ELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
+++|++..+.++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57999999999888775322333457899999999999999998854
No 219
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.69 E-value=9.8e-05 Score=93.43 Aligned_cols=157 Identities=11% Similarity=0.080 Sum_probs=82.7
Q ss_pred ccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc------cceEEeeechhhhcccCCh
Q 001277 182 EILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 255 (1109)
...+.+|||+.+++++...+... ..+.+.++|.+|+||||+|+.+++++.... ...++..+......... .
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~-~ 243 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK-Y 243 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCc-c
Confidence 34567999999999999988643 234578999999999999999999875421 22233222211100000 0
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHHc--CCCCceEeccCCCHH---------H-HHHHHhcCCCCCCCcEEE
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR--QKKVLLVIDDVADVE---------Q-LQNLARKRDWFGPGSKIV 323 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~---------~-~~~l~~~~~~~~~gs~Ii 323 (1109)
. .+.......+.+.+. +++.+|+||+++... + .+.+...+. ..+.++|
T Consensus 244 ----------------~--g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I 303 (854)
T 1qvr_A 244 ----------------R--GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLI 303 (854)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEE
T ss_pred ----------------c--hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEE
Confidence 0 111111122222222 367899999997653 1 112222221 1234566
Q ss_pred EEeCCchhhH---hhC-CCccceEEcCCCCHHHHHHHHHHhh
Q 001277 324 ITTRDKQLLV---AHE-VDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 324 iTTR~~~v~~---~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
.+|....... ... ......+.+++++.++..+++....
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 5555432211 011 1111258999999999999997543
No 220
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00016 Score=82.37 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=42.3
Q ss_pred cccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 183 ILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
...++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 356789999999888776541 223456799999999999999999999876543
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.67 E-value=0.00017 Score=79.75 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=38.3
Q ss_pred cccccchhhHHHHHhhhcc------------cCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 185 KELVGIDSRLEKLRFLIAT------------ESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++|++..++.+...+.. .....+.+.|+|++|+|||++|+++++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999888888776643 1122456889999999999999999987743
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.66 E-value=2.3e-05 Score=84.81 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=83.3
Q ss_pred cccccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 183 ILKELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
...+++|.+..++.+...+.. +....+-+.|+|++|+|||+||+++++.....|-. + +.......
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~~- 83 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIEM- 83 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTTS-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHHh-
Confidence 456789999888888776541 11123347899999999999999999977543311 1 11000000
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHHH-----------------HHHHHhcCCC
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVEQ-----------------LQNLARKRDW 315 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-----------------~~~l~~~~~~ 315 (1109)
... ... ...... +......++.+|+||+++.... +..++..+..
T Consensus 84 -------------~~~-~~~--~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 84 -------------FVG-LGA--SRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp -------------CSS-SCS--SSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred -------------hcc-hHH--HHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 000 000 111122 2222334678999999965421 2223333322
Q ss_pred CC---CCcEEEEEeCCchhhH-hh----CCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 316 FG---PGSKIVITTRDKQLLV-AH----EVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 316 ~~---~gs~IiiTTR~~~v~~-~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
.. ....||.||....... .. .... .+.++..+.++..+++...+
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~--~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDR--QVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCC--CCBCCCCCTTTHHHHHHHHT
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCe--EEEecCcCHHHHHHHHHHHH
Confidence 11 2245666776543211 11 2222 67888888888888887665
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.65 E-value=0.00039 Score=80.59 Aligned_cols=175 Identities=17% Similarity=0.182 Sum_probs=97.1
Q ss_pred cccccccchhhHHHHHhhhcc----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 183 ILKELVGIDSRLEKLRFLIAT----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
...+++|.+..++++.+.... +..-.+-|.|+|++|.|||+||++++......| +..+........
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHH
Confidence 346789998888777665431 111234588999999999999999998764332 222222211111
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH----------------HHHHHHHhcCCCC
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV----------------EQLQNLARKRDWF 316 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~~~~~ 316 (1109)
... ........+.....+.+.+|+||+++.. ..+..++..+..+
T Consensus 90 ~g~--------------------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 90 VGV--------------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp TTH--------------------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred hcc--------------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 000 0001112223333467889999998542 1233343322211
Q ss_pred --CCCcEEEEEeCCchhhHh-h----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 317 --GPGSKIVITTRDKQLLVA-H----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 317 --~~gs~IiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
..+..||.||.....+.. . ..+. .+.++..+.++-.+++..++-......+. + ...+++.+.|+.
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~--~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~-l~~la~~t~G~s 221 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDK--KIVVDPPDMLGRKKILEIHTRNKPLAEDV--N-LEIIAKRTPGFV 221 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCE--EEECCCCCHHHHHHHHHHHHTTSCBCTTC--C-HHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCChhhhchhhcccCccee--EeecCCCCHHHHHHHHHHHHHhCCCcchh--h-HHHHHHhcCCCc
Confidence 245567777766543221 1 2333 78899999988888888776432211111 1 344777778876
No 224
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00044 Score=77.74 Aligned_cols=175 Identities=16% Similarity=0.196 Sum_probs=97.0
Q ss_pred ccccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhc
Q 001277 182 EILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSE 250 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 250 (1109)
....++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .....+...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi----~v~~s~l~s 254 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL----RIVGSELIQ 254 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE----EEESGGGCC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE----EEEHHHhhh
Confidence 3456788999999888776541 1233577999999999999999999998765542 221111111
Q ss_pred c-cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH----------------HHHHHHHhcC
Q 001277 251 K-EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV----------------EQLQNLARKR 313 (1109)
Q Consensus 251 ~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~~ 313 (1109)
. .+......+.++ ...-...+.+|++|+++.. ..+..++...
T Consensus 255 k~vGesek~ir~lF---------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~l 313 (437)
T 4b4t_I 255 KYLGDGPRLCRQIF---------------------KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 313 (437)
T ss_dssp SSSSHHHHHHHHHH---------------------HHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHH---------------------HHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHh
Confidence 1 110111111111 1112356889999998642 1122333222
Q ss_pred CCC--CCCcEEEEEeCCchhhHhhCC---CccceEEcCCCCHHHHHHHHHHhhhcCCCCC-chHHHHHHHHHHHhCCC
Q 001277 314 DWF--GPGSKIVITTRDKQLLVAHEV---DEEHIYNLEVLSNDEALQLFSMKAFKTRQPM-GEYVELSKRVLKYAGGL 385 (1109)
Q Consensus 314 ~~~--~~gs~IiiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~Gl 385 (1109)
+.+ ..+..||.||.....+...-. .-...++++..+.++..++|..++-+-.... -+ ...+++.+.|.
T Consensus 314 Dg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 314 DGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp HHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred hCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 211 234456667755443222111 1122688999999999999987764322111 12 34556666664
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.62 E-value=0.00011 Score=75.55 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=38.5
Q ss_pred ccccccchh----hHHHHHhhhcccCCC--eeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 184 LKELVGIDS----RLEKLRFLIATESSD--VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 184 ~~~~vGr~~----~l~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
..+|++.+. .++.+..++...... .+.+.|+|++|+||||||+++++....+....+++
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 456776553 333444454432221 26889999999999999999999876654444444
No 226
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=1.6e-05 Score=80.59 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=7.8
Q ss_pred ccccCCCcEEeCCCC
Q 001277 593 IQHLTGLVLLNLKDC 607 (1109)
Q Consensus 593 ~~~l~~L~~L~L~~~ 607 (1109)
+...+.|+.|+|++|
T Consensus 32 l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 32 QNNDPDLEEVNLNNI 46 (185)
T ss_dssp HTTCTTCCEEECTTC
T ss_pred HhcCCCCCEEEecCC
Confidence 344455555555554
No 227
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=4.7e-05 Score=75.31 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCcEEeeeccCCCccc-CCCCCCCCCCcEEEecCCCCCcc
Q 001277 669 GLQLLNLNNCSNLVRL-PSCINGLRSLKTLNLSGCSKLQN 707 (1109)
Q Consensus 669 ~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~ 707 (1109)
+|++|+|++|..++.- -..+.++++|++|+|++|..++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 5677777777654331 12244567777777777765543
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.51 E-value=0.00054 Score=85.60 Aligned_cols=150 Identities=16% Similarity=0.173 Sum_probs=83.9
Q ss_pred ccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc------cceEEeeechhhhcccCCh
Q 001277 182 EILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSV 255 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 255 (1109)
...+.+|||+.+++++...+... ...-+.++|++|+|||++|+.+++.+.... ...++..+. +
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------g-- 245 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------G-- 245 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------c--
Confidence 34567999999999999988643 234578999999999999999999874321 112222111 0
Q ss_pred HHHHHHHHHHHhhccCcccccccc-cHHHHHHHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhhHh
Q 001277 256 VSLQKQLLSDLLKLADISIWNVDD-GINIIGSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVA 334 (1109)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~-~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 334 (1109)
.... ...+. ....+......++.+|++| ...+....+.+.+. ....++|.||........
T Consensus 246 --------~~~~-------G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~ 306 (758)
T 3pxi_A 246 --------TKYR-------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKY 306 (758)
T ss_dssp ----------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred --------cccc-------chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHH
Confidence 0000 11111 1222233334678899999 23333344444433 234566666654431111
Q ss_pred hCCC-----ccceEEcCCCCHHHHHHHHHHhh
Q 001277 335 HEVD-----EEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 335 ~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
...+ .-..+.++..+.++..+++....
T Consensus 307 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1111 11279999999999999998654
No 229
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.50 E-value=0.00055 Score=85.68 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=87.9
Q ss_pred cccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc------cceEEeeechhhhcccCChH
Q 001277 183 ILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF------DGSTFLANVREKSEKEGSVV 256 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 256 (1109)
....++||+.+++++...|... ...-+.|+|.+|+||||+|+.+++.+.... ...++..+.......
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~----- 256 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG----- 256 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC-----
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcc-----
Confidence 3457999999999999988643 345578999999999999999998774321 222332211111000
Q ss_pred HHHHHHHHHHhhccCcccccccccHHHHHHHH-cCCCCceEeccCCCH----------HHH-HHHHhcCCCCCCCcEEEE
Q 001277 257 SLQKQLLSDLLKLADISIWNVDDGINIIGSRL-RQKKVLLVIDDVADV----------EQL-QNLARKRDWFGPGSKIVI 324 (1109)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~~-~~l~~~~~~~~~gs~Iii 324 (1109)
... ....+.....+.+.+ ..++.+|+||+++.. .+. +.+...+. ..+.++|.
T Consensus 257 -------------~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~ 320 (758)
T 1r6b_X 257 -------------TKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIG 320 (758)
T ss_dssp -------------CCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEE
T ss_pred -------------ccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEE
Confidence 000 011111122222222 235789999999754 222 23333332 23456666
Q ss_pred EeCCchhhHhhCC-----CccceEEcCCCCHHHHHHHHHHhh
Q 001277 325 TTRDKQLLVAHEV-----DEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 325 TTR~~~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
+|........... .....+.++..+.++..+++...+
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6654332111110 011268999999999999887654
No 230
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=4.5e-05 Score=75.41 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=42.9
Q ss_pred CCcEEeeeccCCCcccCCCCCCCCCCcEEEecCCCCCccc-CcccCCC----CCccEEecCCCc-ccCC-CccccccCCC
Q 001277 669 GLQLLNLNNCSNLVRLPSCINGLRSLKTLNLSGCSKLQNV-PETLGQV----ESLEELDISGTA-IRRP-PSSIFVMNNL 741 (1109)
Q Consensus 669 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l----~~L~~L~L~~~~-i~~~-p~~l~~l~~L 741 (1109)
+|+.|++++|.....--..+..+++|++|+|++|..++.- -..+..+ ++|++|+|++|. +++. -..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4555555555422222223345555666666655543321 1222322 246666666653 4432 2345567788
Q ss_pred cEEEccCCCCCCC
Q 001277 742 KTLSFSGCNGPPS 754 (1109)
Q Consensus 742 ~~L~L~~c~~~~~ 754 (1109)
++|+|++|...+.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 8888888765543
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.46 E-value=0.00052 Score=74.97 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.++.+.++|++|+|||+||+++++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678899999999999999999988543
No 232
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.44 E-value=0.00057 Score=73.54 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=34.9
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..++|.+..+.++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 5689999998888766653222335688999999999999999998654
No 233
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.33 E-value=0.00016 Score=77.15 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=55.2
Q ss_pred CCCCCCCEEecCCCCCCCC-CcccccCCCCCCCEEeCCCCCCcccchhhhccC--CCCceeccCCcCcCcCC
Q 001277 782 SGLHSLSKLDLSDCGLGEG-AIPNDIGNLCSLKQLNLSQNNFVTLPASINSLF--NLGQLDLEDCKRLQSMP 850 (1109)
Q Consensus 782 ~~l~~L~~L~Ls~~~l~~~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~~~l~--~L~~L~L~~c~~L~~lp 850 (1109)
.++++|+.|+|++|.+..- .+|..++.+++|+.|+|++|+++.+. .+..+. +|+.|+|++|+....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 4578999999999999431 45566778999999999999999874 345555 99999999999877666
No 234
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.30 E-value=0.00059 Score=75.38 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=38.7
Q ss_pred cccccchhhHHHHHhhhcccC-------CCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 185 KELVGIDSRLEKLRFLIATES-------SDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 457899988888877765321 12357999999999999999999997744
No 235
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.28 E-value=0.00039 Score=76.35 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=37.8
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..++|++..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999998887776433334567899999999999999998854
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.26 E-value=0.0015 Score=77.86 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=37.8
Q ss_pred cccccchhhHHHHHhhhcc----cCCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 185 KELVGIDSRLEKLRFLIAT----ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
.+++|.+...+.+...+.. .......+.++|++|+||||||+.++......|
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 4578888777766544331 112456899999999999999999999875443
No 237
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.26 E-value=0.0017 Score=75.70 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=39.0
Q ss_pred cccccccchhhHHHHHhhhc---ccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 183 ILKELVGIDSRLEKLRFLIA---TESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
....++|.+..++.+..++. .+....+-+.++|++|+|||++|+++++.+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 34789999998877655443 2322345788999999999999999998775
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.21 E-value=0.00088 Score=82.20 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=95.9
Q ss_pred ccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 184 LKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
..++.|.+..+++|.+.+.. +...++-|.++|++|.|||+||+++++....+| +..+..+.....
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhccc
Confidence 46788999999888776541 123457799999999999999999998765432 332222211111
Q ss_pred -CChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCHH-------------HHHHHHhcCCCC--
Q 001277 253 -GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADVE-------------QLQNLARKRDWF-- 316 (1109)
Q Consensus 253 -~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~~~~~-- 316 (1109)
+..... ....+.......+.+|+||+++... ....|+......
T Consensus 279 ~gese~~---------------------lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 279 AGESESN---------------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp TTHHHHH---------------------HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred chHHHHH---------------------HHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 100011 1111222234578899999985421 122333222111
Q ss_pred CCCcEEEEEeCCchhh-Hhh----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCCCc
Q 001277 317 GPGSKIVITTRDKQLL-VAH----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGGLP 386 (1109)
Q Consensus 317 ~~gs~IiiTTR~~~v~-~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 386 (1109)
..+..||-||...... ... ..+. .+++...+.++-.++|..+.-+.....+ .....+++.+.|.-
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~--~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDR--EVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCE--EEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccce--EEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 1234455566543321 111 2333 7999999999999999877633211111 11345667777654
No 239
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.18 E-value=0.00017 Score=69.54 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=34.1
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 357899999988887765322223457899999999999999987754
No 240
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.17 E-value=0.0028 Score=67.62 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=35.4
Q ss_pred ccccccccchhhHHHHHhhhcc--c--------CCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 182 EILKELVGIDSRLEKLRFLIAT--E--------SSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
....+++|.+....++..+... . -.-.+-+.|+|++|.||||||++++....
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456788887766665544321 0 01112389999999999999999998765
No 241
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.15 E-value=0.0032 Score=68.14 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=37.0
Q ss_pred cccccccccchhhHHHHHhhhccc----------CCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 181 PEILKELVGIDSRLEKLRFLIATE----------SSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.....+++|.+..++++..+...- -.-.+-+.|+|++|+||||||++++....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 344567889887777665543310 00112389999999999999999998765
No 242
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.0025 Score=69.73 Aligned_cols=146 Identities=13% Similarity=0.070 Sum_probs=85.3
Q ss_pred cchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh---ccccceEEeeechhhhcccCChHHHHHHHHHH
Q 001277 189 GIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS---HEFDGSTFLANVREKSEKEGSVVSLQKQLLSD 265 (1109)
Q Consensus 189 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 265 (1109)
|-+..++.|...+..+. .+...++|++|.||||+|+.+++... ...+....+. . ......+..+ +++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~---~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-P---EGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-C---SSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-C---CcCCCCHHHH-HHHHHH
Confidence 44556677777776443 67888999999999999999987531 1112222222 0 1001112222 222222
Q ss_pred HhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEeCCc-hhhHhhCCCccce
Q 001277 266 LLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDWFGPGSKIVITTRDK-QLLVAHEVDEEHI 342 (1109)
Q Consensus 266 l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~ 342 (1109)
..... ..+++-++|+|+++.. +..+.|+..+....+.+.+|++|.+. .+....... .
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~ 133 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---V 133 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---S
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---e
Confidence 21100 0234568899999764 44566665554445678888777554 333333222 7
Q ss_pred EEcCCCCHHHHHHHHHHhh
Q 001277 343 YNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 343 ~~l~~L~~~ea~~Lf~~~a 361 (1109)
++++++++++..+.+.+.+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998776
No 243
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.07 E-value=0.00023 Score=75.95 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=15.8
Q ss_pred cCcCcEEEecCCCCCC--cccccccCCCCCcEEeccCccCcc
Q 001277 620 LQCLKNLTLSGCSKLK--KFPESLGSMKDLMELFLDGTSIAE 659 (1109)
Q Consensus 620 l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~~~i~~ 659 (1109)
+++|++|+|++|.... .+|..+..+++|+.|+|++|.|..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 3444444444443222 223333344444444444444443
No 244
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.06 E-value=0.0045 Score=66.66 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=66.3
Q ss_pred EEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH-c
Q 001277 211 MGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-R 289 (1109)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~ 289 (1109)
++|+|++|.||||||++++...... .+.+. ........ .... ...+ ..+.+.. .
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~~--~~~~-~~~i------------------~~vf~~a~~ 101 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNMY--VGES-ERAV------------------RQVFQRAKN 101 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSST--THHH-HHHH------------------HHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhhh--hhHH-HHHH------------------HHHHHHHHh
Confidence 9999999999999999999876432 22222 11111100 0110 0011 1111111 2
Q ss_pred CCCCceEeccCCCHH-------------HHHHHHhcCCC--CCCCcEEEEEeCCchhhHhh-----CCCccceEEcCCCC
Q 001277 290 QKKVLLVIDDVADVE-------------QLQNLARKRDW--FGPGSKIVITTRDKQLLVAH-----EVDEEHIYNLEVLS 349 (1109)
Q Consensus 290 ~k~~LlVLDdv~~~~-------------~~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~~-----~~~~~~~~~l~~L~ 349 (1109)
..+.++++|+++... ....+...+.. .....-++.+|....+.... ..+. .+.++..+
T Consensus 102 ~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~--~i~~~~P~ 179 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDK--TLFVGLPP 179 (274)
T ss_dssp TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCE--EEECCSCC
T ss_pred cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCe--EEEeCCcC
Confidence 356788888886420 12222222211 12234556666665443221 3444 78899999
Q ss_pred HHHHHHHHHHhh
Q 001277 350 NDEALQLFSMKA 361 (1109)
Q Consensus 350 ~~ea~~Lf~~~a 361 (1109)
.++..++|..+.
T Consensus 180 ~~~r~~il~~~~ 191 (274)
T 2x8a_A 180 PADRLAILKTIT 191 (274)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 245
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.02 E-value=0.00054 Score=61.71 Aligned_cols=72 Identities=8% Similarity=0.042 Sum_probs=53.0
Q ss_pred CcccEEEccccccCccchHHHHHHHHHhCCCceEeeCCCCCCCCCCcHHHHHHHHhcceEEEEeccccccchhhHHHHHH
Q 001277 12 GKYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISIIVLSKNYASSTWCLDELVK 91 (1109)
Q Consensus 12 ~~~dvfis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~l~~~i~~s~~~ivv~S~~y~~s~~c~~El~~ 91 (1109)
.+|.+||||+.+|. .+.|...|.+.|+..- | +.|+.|+.+||+.++....|+||..|+..
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 58999999999982 3445555555566433 2 56788999999999999999999999987
Q ss_pred HHHhccCCceEEeEE
Q 001277 92 IVECKKRDHEIFPIF 106 (1109)
Q Consensus 92 ~~~~~~~~~~v~pv~ 106 (1109)
+.+ .|..++-|.
T Consensus 63 A~~---~gkpIigV~ 74 (111)
T 1eiw_A 63 ARK---SSKPIITVR 74 (111)
T ss_dssp HTT---TTCCEEEEC
T ss_pred HHH---cCCCEEEEE
Confidence 765 344455544
No 246
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.98 E-value=0.0028 Score=79.15 Aligned_cols=150 Identities=15% Similarity=0.204 Sum_probs=83.7
Q ss_pred cccccchhhHHHHHhhhcccC-------CCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHH
Q 001277 185 KELVGIDSRLEKLRFLIATES-------SDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVS 257 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1109)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+ +..+..+... ..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~-~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHS-TS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCC-CC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccc-cc-
Confidence 568999998888877765221 1223689999999999999999999764322222222 3333322221 00
Q ss_pred HHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH--HHHHHHHhcCCC-----------CCCCcEEEE
Q 001277 258 LQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV--EQLQNLARKRDW-----------FGPGSKIVI 324 (1109)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~~~~-----------~~~gs~Iii 324 (1109)
.......++ ....-+|+||+++.. +....|...+.. .....+||+
T Consensus 568 -------------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 568 -------------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred -------------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 001111121 123458999999653 333333332211 123568888
Q ss_pred EeCCch-----hh--------H--hhCCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 325 TTRDKQ-----LL--------V--AHEVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 325 TTR~~~-----v~--------~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
||.... +. . ..+.+. ++.+.+++.++..+++...+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~--~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDE--IIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSE--EEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCe--EEecCCCCHHHHHHHHHHHH
Confidence 887311 00 0 012333 89999999999988887654
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.96 E-value=0.0044 Score=72.23 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=91.2
Q ss_pred ccccccccchhhHHHHHhhhcc--c--------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 182 EILKELVGIDSRLEKLRFLIAT--E--------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 182 ~~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
....+++|.+..+.++..+... . ..-.+-|.|+|++|.||||||++++...... .+.+ +.......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i-~g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITA-SGSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEE-EGGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEE-ehhHHHHh
Confidence 3456788988887776655431 0 0112348999999999999999999876422 1222 21111111
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHc----CCCCceEeccCCCH----------------HHHHHHHh
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLR----QKKVLLVIDDVADV----------------EQLQNLAR 311 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~----~k~~LlVLDdv~~~----------------~~~~~l~~ 311 (1109)
.. ......++..++ ..+.++++|+++.. ..+..++.
T Consensus 104 ~~------------------------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 104 FV------------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 159 (499)
T ss_dssp CT------------------------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred hh------------------------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence 00 001111222222 23579999998532 12334443
Q ss_pred cCCCC--CCCcEEEEEeCCchhhHhh-----CCCccceEEcCCCCHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHhCC
Q 001277 312 KRDWF--GPGSKIVITTRDKQLLVAH-----EVDEEHIYNLEVLSNDEALQLFSMKAFKTRQPMGEYVELSKRVLKYAGG 384 (1109)
Q Consensus 312 ~~~~~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G 384 (1109)
.+..+ ..+..|+.||.....+... ..+. .+.++..+.++-.+++..++-+.....+. ....++..+.|
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr--~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G 234 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDR--QIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPG 234 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCC--EEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCS
T ss_pred HhcccccCccEEEEEecCChhhcCcccccccccce--EEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCC
Confidence 33222 2334555566655432211 2233 78999999999999998775321111111 12345566666
Q ss_pred Cc
Q 001277 385 LP 386 (1109)
Q Consensus 385 lP 386 (1109)
+.
T Consensus 235 ~~ 236 (499)
T 2dhr_A 235 FV 236 (499)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.95 E-value=0.002 Score=80.41 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=84.9
Q ss_pred cccccccchhhHHHHHhhhcc-----------cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcc
Q 001277 183 ILKELVGIDSRLEKLRFLIAT-----------ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEK 251 (1109)
Q Consensus 183 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1109)
....++|.+..+++|.+++.. .-...+.|.|+|.+|+||||||++++......| +..+.......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~----i~v~~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE----EEEEHHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE----EEEEchHhhhh
Confidence 346799999999999887752 123456799999999999999999988764433 22211111110
Q ss_pred cCChHHHHHHHHHHHhhccCcccccccccHHHHHHHHcCCCCceEeccCCCH----------------HHHHHHHhcCCC
Q 001277 252 EGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRLRQKKVLLVIDDVADV----------------EQLQNLARKRDW 315 (1109)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~~~~ 315 (1109)
. ..... . .....+.......+.++++|+++.. .++-.+.....
T Consensus 278 ~--~g~~~-~-----------------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~- 336 (806)
T 1ypw_A 278 L--AGESE-S-----------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK- 336 (806)
T ss_dssp S--TTHHH-H-----------------HHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-
T ss_pred h--hhhHH-H-----------------HHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-
Confidence 0 00000 0 0111122222346789999998321 11222222221
Q ss_pred CCCCcEEEEEeCCchhh-Hhh----CCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 316 FGPGSKIVITTRDKQLL-VAH----EVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 316 ~~~gs~IiiTTR~~~v~-~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
...+..+|.||...... ... ... ..+.+...+.++..+++..++
T Consensus 337 ~~~~v~vI~atn~~~~ld~al~r~gRf~--~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFD--REVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TTSCCEEEEECSCTTTSCTTTTSTTSSC--EEECCCCCCHHHHHHHHHHTT
T ss_pred ccccEEEecccCCchhcCHHHhcccccc--cccccCCCCHHHHHHHHHHHH
Confidence 12345566666554221 111 122 267888889999999887765
No 249
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.92 E-value=0.0013 Score=63.69 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
....++|+|..|.|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999987754
No 250
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.73 E-value=0.0057 Score=69.41 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...+.++|++|+|||++|+++++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998774
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.20 E-value=0.0075 Score=75.34 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=37.8
Q ss_pred cccccchhhHHHHHhhhccc-------CCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 185 KELVGIDSRLEKLRFLIATE-------SSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..++|.+..++.+...+... ......+.++|++|+|||++|+++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 45889999888887666521 11234789999999999999999998773
No 252
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.10 E-value=0.0081 Score=65.84 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=36.8
Q ss_pred ccccccch----hhHHHHHhhhcccCC-CeeEEEEEecCCchhHHHHHHHHHHHh-ccccceEEe
Q 001277 184 LKELVGID----SRLEKLRFLIATESS-DVRMMGIWGMGGLGKTTLARVAYDLIS-HEFDGSTFL 242 (1109)
Q Consensus 184 ~~~~vGr~----~~l~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~ 242 (1109)
..+|++.+ ..++.+..++..... ..+.+.|+|.+|+|||+||.++++... ..-..+.++
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 34566533 233344445543211 246788999999999999999999776 443333444
No 253
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.02 E-value=0.0068 Score=74.36 Aligned_cols=151 Identities=15% Similarity=0.239 Sum_probs=78.1
Q ss_pred ccccccchhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhccc
Q 001277 184 LKELVGIDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKE 252 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1109)
...+.|.+...++|.+.+... ....+-|.++|++|.|||.||+++++.....| +.....+
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~~~----- 546 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGPE----- 546 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCHHH-----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEeccch-----
Confidence 456778888888887665421 12245688999999999999999999765432 1111111
Q ss_pred CChHHHHHHHHHHHhhccCcccccccccHHHHHHHH-cCCCCceEeccCCCHH----------------HHHHHHhcCCC
Q 001277 253 GSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL-RQKKVLLVIDDVADVE----------------QLQNLARKRDW 315 (1109)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~----------------~~~~l~~~~~~ 315 (1109)
++.... ...+..+..+-+.. +..+.+|+||+++..- .+..|+..++.
T Consensus 547 ---------l~s~~v-------Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg 610 (806)
T 3cf2_A 547 ---------LLTMWF-------GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp ---------HHTTTC-------SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHS
T ss_pred ---------hhcccc-------chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC
Confidence 110000 11112222222222 3568999999986420 13344433332
Q ss_pred CCCC-cEEEE-EeCCch-hhHh----hCCCccceEEcCCCCHHHHHHHHHHhh
Q 001277 316 FGPG-SKIVI-TTRDKQ-LLVA----HEVDEEHIYNLEVLSNDEALQLFSMKA 361 (1109)
Q Consensus 316 ~~~g-s~Iii-TTR~~~-v~~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (1109)
.... ..++| ||.... +-.+ -+.+. .+.++..+.++-.++|..+.
T Consensus 611 ~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~--~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 611 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQ--LIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SCSSSSEEEECC-CCSSSSCHHHHSTTTSCC--EEEC-----CHHHHTTTTTS
T ss_pred CCCCCCEEEEEeCCCchhCCHhHcCCCcceE--EEEECCcCHHHHHHHHHHHh
Confidence 2222 23333 444332 2111 13444 78888888888888887665
No 254
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.97 E-value=0.007 Score=65.45 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
.+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 467889999999999999999876
No 255
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.93 E-value=0.0083 Score=62.12 Aligned_cols=35 Identities=26% Similarity=0.152 Sum_probs=25.7
Q ss_pred HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHH
Q 001277 196 KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
.|..++..+-....+++|+|.+|+||||||..++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33444432223456899999999999999999887
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.78 E-value=0.092 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998664
No 257
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.68 E-value=0.1 Score=56.46 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=24.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.++++++|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6799999999999999999998877654
No 258
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.67 E-value=0.028 Score=70.89 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=38.5
Q ss_pred cccccchhhHHHHHhhhccc-------CCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 185 KELVGIDSRLEKLRFLIATE-------SSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++|.+..++.+...+... ......+.|+|++|+|||++|+++++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45799999888887766521 112357899999999999999999987643
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.66 E-value=0.087 Score=57.28 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=28.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...+|+|+|.+|+||||++..++..++.. ...+.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 46799999999999999999999877654 3344443
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.66 E-value=0.052 Score=53.50 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=18.6
Q ss_pred eEEEEEecCCchhHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVA 228 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v 228 (1109)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 261
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.65 E-value=0.019 Score=57.41 Aligned_cols=27 Identities=22% Similarity=0.115 Sum_probs=20.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..|.|++-.|.||||+|-.++-+...+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~ 55 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH 55 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 456677777799999998887765443
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.43 E-value=0.011 Score=61.13 Aligned_cols=112 Identities=14% Similarity=-0.025 Sum_probs=57.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhcc-CcccccccccHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLA-DISIWNVDDGINIIG 285 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-~~~~~~~~~~~~~l~ 285 (1109)
...++.|+|..|.||||++..++++...+-..+.++...... + + .. ++++++.... ........+..+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~-~~----~i~srlG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-S-IR----NIQSRTGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-G-CS----SCCCCCCCSSCCEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-H-HH----HHHHhcCCCccccccCCHHHHHHHHH
Confidence 346889999999999999988888776553333333211110 0 1 00 1112221100 000012223333333
Q ss_pred HHHcCC-CCceEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEeCCc
Q 001277 286 SRLRQK-KVLLVIDDVAD--VEQLQNLARKRDWFGPGSKIVITTRDK 329 (1109)
Q Consensus 286 ~~L~~k-~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~ 329 (1109)
+.+.+. .-+||+|.+.. .++++.+.... ..|..||+|-++.
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~---~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILA---ENGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHH---hCCCeEEEEeccc
Confidence 333333 44999999854 24444443311 1378899999854
No 263
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.26 E-value=0.072 Score=58.42 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=28.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..++|+|+|.+|+||||++..++..++.. ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 46799999999999999999998877654 3444443
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.18 E-value=0.0068 Score=75.62 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=40.0
Q ss_pred ccccccchhhHHHHHhhhccc-----------CCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 184 LKELVGIDSRLEKLRFLIATE-----------SSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
...++|.+...+.|...+... -...+.+.++|++|.||||||++++......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 456788888888887776421 12245688999999999999999999875443
No 265
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.17 E-value=0.028 Score=62.31 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 194 LEKLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 194 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...|...|. .+-...+++.|.|.+|+||||||..++......=..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345555554 23334579999999999999999999887654323345653
No 266
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.11 E-value=0.069 Score=56.72 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=64.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeech--hhhcccCChHHHHHHHHHHHhhccCcccccccccHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVR--EKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINII 284 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l 284 (1109)
...+++|+|+.|.|||||++.+...+...+.+.+.+.... ........+ ....... .+.......+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~-----------v~q~~~g-l~~~~l~~~l 91 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI-----------VNQREVG-EDTKSFADAL 91 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE-----------EEEEEBT-TTBSCHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee-----------eeHHHhC-CCHHHHHHHH
Confidence 3478999999999999999999887655445555543210 000000000 0000000 0112345667
Q ss_pred HHHHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchh
Q 001277 285 GSRLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQL 331 (1109)
Q Consensus 285 ~~~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 331 (1109)
.+.|..++=+|++|..-+.+....++... ..|..|++||-+...
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 77777788899999997766655444331 346778888876553
No 267
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.97 E-value=0.19 Score=58.05 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=34.4
Q ss_pred cchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc-ceEEe
Q 001277 189 GIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD-GSTFL 242 (1109)
Q Consensus 189 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~ 242 (1109)
|...-...|..++ .+-....++.|.|.+|+||||||..++........ .++|+
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3333344555555 33344568999999999999999998886654322 34444
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.93 E-value=0.1 Score=57.26 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=35.4
Q ss_pred cchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 189 GIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 189 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
|...-+..|..++ .+-....++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3344445555555 33344578999999999999999998876544323445553
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.93 E-value=0.47 Score=53.92 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.1
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..++|.++|.+|+||||++..++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999988876654
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.93 E-value=0.022 Score=58.38 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=28.7
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
++|.+.+........+|+|+|..|.|||||++.+...+.
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344343332234567999999999999999999988765
No 271
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=94.88 E-value=0.12 Score=49.77 Aligned_cols=106 Identities=16% Similarity=0.252 Sum_probs=74.0
Q ss_pred cccEEEcc--------------ccccCccchHHHHHHHHHhCCCceEeeCCCC----CC----CCCCcHHHHHHHHhcce
Q 001277 13 KYDAFLSF--------------RGEDTRKSFTDHLYAALKNKGIYVFKDDKEL----EK----GGSISPNLLEAIEESRI 70 (1109)
Q Consensus 13 ~~dvfis~--------------~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~----~~----g~~~~~~l~~~i~~s~~ 70 (1109)
+=-+|++| +.+| ......|...-....+-.|.|..+. .. -+.|.+.|.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44578888 4555 3456677777777666667776544 22 34678899999999999
Q ss_pred EEEEeccccccchhhHHHHHHHH-HhccCCceEEeEEeecc-ccccccccChhhH
Q 001277 71 SIIVLSKNYASSTWCLDELVKIV-ECKKRDHEIFPIFYDVE-PTAVRKQTTSFGE 123 (1109)
Q Consensus 71 ~ivv~S~~y~~s~~c~~El~~~~-~~~~~~~~v~pv~~~v~-p~~vr~~~~~~~~ 123 (1109)
+|+++|++...|.|-.+|+..+. + .+..||-|..+-+ .+.+..-.|++..
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~~---~~~PII~Vy~~~~~~~~i~~~~g~~~~ 134 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIGT---KGLPVIVIYPDYDKKSDIVDSNGNFKK 134 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTTT---TCCCEEEEETTCCSGGGTBCTTSCBCH
T ss_pred EEEEEecCccccchhHHHHHHHHHh---cCCcEEEEECCccccchhhhccccchh
Confidence 99999999999999999999988 5 3456777764422 2334443455443
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.81 E-value=0.051 Score=60.52 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=66.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEe-eechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL-ANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSR 287 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1109)
.+++|+|+.|.|||||.+.+...+.......++. .+..+...... . ......... .+.......+.+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-~---------~~v~q~~~~-~~~~~~~~~La~a 192 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-K---------CLVNQREVH-RDTLGFSEALRSA 192 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S---------SEEEEEEBT-TTBSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-c---------cceeeeeec-cccCCHHHHHHHH
Confidence 5999999999999999999988776543333332 21111000000 0 000000000 1223445678888
Q ss_pred HcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCchhh
Q 001277 288 LRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLL 332 (1109)
Q Consensus 288 L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 332 (1109)
|...+=+|++|..-+.+.++.+.... ..|..||+||-.....
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999999999999887766655432 3466788888776543
No 273
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.74 E-value=0.019 Score=63.70 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=39.3
Q ss_pred ccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 184 LKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 184 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
...++|++..++.+...+..+ +-+.++|.+|+|||+||+++++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 457899999998887777643 358899999999999999999877543
No 274
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.72 E-value=0.078 Score=54.42 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=24.1
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...++|.|.|++|.||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999988865
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.67 E-value=0.014 Score=58.11 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|.|.|++|.||||+|+.+..++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 276
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.62 E-value=0.058 Score=61.59 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=28.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVRE 247 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 247 (1109)
+.++|+|.+|+||||||+.+......++...+.+..+.+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGe 190 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGE 190 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESS
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeecc
Confidence 468899999999999999999877665544433333433
No 277
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.59 E-value=0.044 Score=55.78 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=32.6
Q ss_pred chhhHHHHHhhhcc-cCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 190 IDSRLEKLRFLIAT-ESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 190 r~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
|+..+++|.+.+.. ......+|+|.|..|.||||+++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44455666555543 2235679999999999999999999886643
No 278
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.59 E-value=0.048 Score=55.60 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=46.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhccccceEEee---echhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA---NVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
+|.|.|++|.||||.|+.++.++. ...+. -+|+.......+.. ........... .+.+-....+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~----~~~~~~~~G~l--vpd~iv~~lv~~ 70 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGK----KAKEYMERGEL--VPDDLIIALIEE 70 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHH----HHHHHHHHTCC--CCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhh----hHHHHHhcCCc--CCHHHHHHHHHH
Confidence 477899999999999999887652 22232 01111111110111 11111111221 222335666777
Q ss_pred HHcCCCCceEeccC-CCHHHHHHH
Q 001277 287 RLRQKKVLLVIDDV-ADVEQLQNL 309 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv-~~~~~~~~l 309 (1109)
++..... +|||+. .+..|.+.|
T Consensus 71 ~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 71 VFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HCCSSSC-EEEESCCCSHHHHHHH
T ss_pred hhccCCc-eEecCCchhHHHHHHH
Confidence 7765554 789998 455665554
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.57 E-value=0.022 Score=64.12 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=35.6
Q ss_pred ccccchhhHHHHHhhhc-------------ccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 186 ELVGIDSRLEKLRFLIA-------------TESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 186 ~~vGr~~~l~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46788887777766662 0111345688999999999999999998774
No 280
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.56 E-value=0.0078 Score=60.55 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=26.2
Q ss_pred CCCCEEecCCCCCCCCC---cccccCCCCCCCEEeCCCC---CCc-----ccchhhhccCCCCceecc
Q 001277 785 HSLSKLDLSDCGLGEGA---IPNDIGNLCSLKQLNLSQN---NFV-----TLPASINSLFNLGQLDLE 841 (1109)
Q Consensus 785 ~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~Ls~n---~l~-----~lp~~~~~l~~L~~L~L~ 841 (1109)
++|++|+|++|.+++.. +-..+..-..|++|+|++| .+. .+...+..-++|+.|+++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 44555555555553221 1223333445666666543 222 133344445555555554
No 281
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.49 E-value=0.029 Score=61.77 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=31.8
Q ss_pred ccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 188 VGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 188 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.|...-...|..++. +-....++.|.|.+|+||||||..++.....
T Consensus 27 ~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 344444445555543 3334468999999999999999998876654
No 282
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.39 E-value=4.2 Score=45.26 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=34.9
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..++|....+.++...+..-......|.|+|.+|.||+++|+.+...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 468898888877766654222222347799999999999999987644
No 283
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.35 E-value=0.15 Score=57.34 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=63.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGS 286 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1109)
...+++|+|+.|.||||+++.+...+.....+.+.+... ..+ .. ... .+ .+....... .+.......++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~--~~e-~~-~~~---~~--~~v~Q~~~g-~~~~~~~~~l~~ 204 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED--PIE-YV-FKH---KK--SIVNQREVG-EDTKSFADALRA 204 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES--SCC-SC-CCC---SS--SEEEEEEBT-TTBSCSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc--cHh-hh-hcc---Cc--eEEEeeecC-CCHHHHHHHHHH
Confidence 346899999999999999999998765543444433211 000 00 000 00 000000000 122344567778
Q ss_pred HHcCCCCceEeccCCCHHHHHHHHhcCCCCCCCcEEEEEeCCch
Q 001277 287 RLRQKKVLLVIDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQ 330 (1109)
Q Consensus 287 ~L~~k~~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 330 (1109)
.|+..+=+|++|.+.+.+.+...+... ..|..|+.|+-...
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 888888899999998777655544332 34666777776544
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.34 E-value=0.02 Score=56.46 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=22.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|+|.|++|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 285
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.19 E-value=0.025 Score=57.59 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|+|++|.||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998773
No 286
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.11 E-value=0.08 Score=49.51 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=40.1
Q ss_pred CEEecCCCCCCCCCcccccCCCCCCCEEeCCCCCCcccchh-hhccCCCCceeccCCc
Q 001277 788 SKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPAS-INSLFNLGQLDLEDCK 844 (1109)
Q Consensus 788 ~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~L~~c~ 844 (1109)
..++.++++++...+|..+ .++|+.|+|++|+|+.||.. +..+++|+.|+|.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3677777777523477543 34788899999988888864 5778888888888775
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.09 E-value=0.025 Score=56.69 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+.|.|+|++|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 288
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.07 E-value=0.042 Score=60.64 Aligned_cols=30 Identities=20% Similarity=-0.029 Sum_probs=25.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
....++|+|.+|.|||||++.+++.+....
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 346899999999999999999988765543
No 289
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.03 E-value=0.24 Score=54.93 Aligned_cols=156 Identities=8% Similarity=-0.023 Sum_probs=94.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh-ccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS-HEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIG 285 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1109)
-.++..++|..|.||++.|+.+...+. ..|+....+. +. ...+ +..+...+ . .
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~-~~~l~~~~----~-----------------~ 70 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTD-WNAIFSLC----Q-----------------A 70 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCC-HHHHHHHH----H-----------------H
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCC-HHHHHHHh----c-----------------C
Confidence 356889999999999999999988664 3343221111 11 1111 32222221 1 0
Q ss_pred HHHcCCCCceEeccCCC-H--HHHHHHHhcCCCCCCCcEEEEEeCC-------chhhHhhCCCccceEEcCCCCHHHHHH
Q 001277 286 SRLRQKKVLLVIDDVAD-V--EQLQNLARKRDWFGPGSKIVITTRD-------KQLLVAHEVDEEHIYNLEVLSNDEALQ 355 (1109)
Q Consensus 286 ~~L~~k~~LlVLDdv~~-~--~~~~~l~~~~~~~~~gs~IiiTTR~-------~~v~~~~~~~~~~~~~l~~L~~~ea~~ 355 (1109)
.-+.+++-++|+|+++. . +..+.|...+....+++.+|++|.. ..+...... ...+++..+++.++..+
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEECCCCTTHHHH
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEeeCCCHHHHHH
Confidence 11234566888999865 2 4556666555444567888777643 233333221 12389999999999998
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHHhCCCchhHHH
Q 001277 356 LFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTV 391 (1109)
Q Consensus 356 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 391 (1109)
.+...+-... ..-..+.+..+++.++|...++..
T Consensus 150 ~l~~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 150 WVAARAKQLN--LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHTT--CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHHhchHHHHHHH
Confidence 8887764332 122346778899999998877654
No 290
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.02 E-value=0.093 Score=57.67 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=27.9
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
....+++|+|+.|+||||+++.++..+... .+.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l 162 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVI 162 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEE
Confidence 346899999999999999999998866543 334444
No 291
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.01 E-value=0.048 Score=58.94 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=25.6
Q ss_pred CCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 205 SSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.....+|+|+|..|.||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345679999999999999999999886654
No 292
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.97 E-value=0.11 Score=57.91 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=34.1
Q ss_pred hHHHHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 193 RLEKLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 193 ~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
-...|..+|. .+-...+++.|.|.+|+||||||..++......-..++|+.
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3445555554 22234568999999999999999988876654333455654
No 293
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.95 E-value=0.48 Score=54.47 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=32.3
Q ss_pred cchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 189 GIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 189 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
|...-...|..++. +-....++.|.|.+|+||||+|..++.....+
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 34444445555552 33345689999999999999999988866554
No 294
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.94 E-value=0.013 Score=58.84 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=49.7
Q ss_pred cccCCCCCccEEecCCCcccCC-----CccccccCCCcEEEccCCCCCCCCCCcccccccccccccCCCccccCCCCCCC
Q 001277 710 ETLGQVESLEELDISGTAIRRP-----PSSIFVMNNLKTLSFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGL 784 (1109)
Q Consensus 710 ~~l~~l~~L~~L~L~~~~i~~~-----p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l 784 (1109)
+.+..-+.|+.|+|++|.+.+. ...+..-+.|++|+|+.|..... ....+...+..-
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~------------------Ga~ala~aL~~N 125 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE------------------LLARLLRSTLVT 125 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH------------------HHHHHHHHTTTT
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH------------------HHHHHHHHHhhC
Confidence 3444455566666666655532 23344456666666666543211 011122334445
Q ss_pred CCCCEEecCCCC---CCCC---CcccccCCCCCCCEEeCCCCCC
Q 001277 785 HSLSKLDLSDCG---LGEG---AIPNDIGNLCSLKQLNLSQNNF 822 (1109)
Q Consensus 785 ~~L~~L~Ls~~~---l~~~---~lp~~l~~l~~L~~L~Ls~n~l 822 (1109)
++|++|+|++|. +.+. .+-..+..-+.|+.|+++.|.+
T Consensus 126 ~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 126 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 568888887652 2211 1333455567888888887654
No 295
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.91 E-value=0.043 Score=60.31 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=31.9
Q ss_pred chhhHHHHHhhhc--ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 190 IDSRLEKLRFLIA--TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 190 r~~~l~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
.+.-.+++.+.+. ...+....|.|+|++|.||||+|+.++..+...|
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3334444444433 1233456799999999999999999998776554
No 296
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.86 E-value=0.34 Score=56.07 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=32.0
Q ss_pred HHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcccc-ceEEe
Q 001277 194 LEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFD-GSTFL 242 (1109)
Q Consensus 194 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~ 242 (1109)
...|..++ .+-....++.|.|.+|+||||||..++..+..... .+.|+
T Consensus 190 ~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 190 FTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred cHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 33444444 23334568999999999999999999887654323 34444
No 297
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.81 E-value=0.53 Score=53.48 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..++|.++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998877654
No 298
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.71 E-value=0.072 Score=59.24 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 194 LEKLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 194 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...|..+|. .+-...+++.|+|.+|+||||||..++......=..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344555554 23334578999999999999999998876654323445554
No 299
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.71 E-value=0.077 Score=57.11 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=25.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhccc-c-ceEEee
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHEF-D-GSTFLA 243 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f-~-~~~~~~ 243 (1109)
++-|.|.+|+||||||.+++.....++ . .++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999988887665543 2 345553
No 300
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.64 E-value=0.037 Score=61.82 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=36.0
Q ss_pred cccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 181 PEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 181 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+.....++|.+..++.+...+.... ..-+.|+|.+|+|||+||+++++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 3345679999886655443332221 23388999999999999999998664
No 301
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.62 E-value=0.19 Score=57.39 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=25.9
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
...++|.++|.+|+||||+|..++..++.+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346899999999999999999998877664
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.55 E-value=0.046 Score=55.03 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.7
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+|.|.|++|.||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 303
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.53 E-value=0.061 Score=54.05 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=23.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.+|.|.|++|+||||+|+.+..++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 304
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.49 E-value=0.14 Score=52.63 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 357899999999999999999988664
No 305
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.44 E-value=0.04 Score=55.42 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.6
Q ss_pred eeEEEEEecCCchhHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
..+++|+|++|.|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999998774
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.42 E-value=0.027 Score=56.29 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=23.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999887665444
No 307
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.41 E-value=0.048 Score=55.47 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...+|+|+|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998775
No 308
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.40 E-value=0.04 Score=54.72 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEEEEecCCchhHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
.+|.|.|++|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999887
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.38 E-value=0.034 Score=55.45 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.++|.|+|++|.||||+|+.++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998876
No 310
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.37 E-value=0.038 Score=55.18 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988654
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.35 E-value=0.058 Score=52.85 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=27.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEE
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTF 241 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~ 241 (1109)
..++++|.|..|.|||||+..+...+..+ +...++
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEE
Confidence 35789999999999999999999887654 443333
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.34 E-value=0.042 Score=54.01 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|.|+.|.||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.33 E-value=0.057 Score=54.84 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+|+|+|+.|.||||||+.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.33 E-value=0.032 Score=55.11 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|+|+|+.|.||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988654
No 315
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.25 E-value=0.064 Score=56.41 Aligned_cols=27 Identities=19% Similarity=-0.029 Sum_probs=23.5
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.....|+|.|++|+||||+|+.+..++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998765
No 316
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.21 E-value=0.44 Score=51.45 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999887753
No 317
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.11 E-value=0.041 Score=64.19 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=37.3
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+.+||++..++.+...+..+ +-|.|+|++|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 56899999998887776544 3688999999999999999988653
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.10 E-value=0.085 Score=52.78 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=24.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+|.|.|++|.||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999987754
No 319
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.05 E-value=0.17 Score=56.11 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=28.5
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..|..+|..+-....++.|+|.+|+||||||..++...
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555554333456799999999999999999988764
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.03 E-value=0.05 Score=54.62 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.+|.|.|++|+||||+|+.+..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987764
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.99 E-value=0.047 Score=55.50 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.3
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.|+|.|+.|+||||+|+.++.++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999987753
No 322
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.98 E-value=0.041 Score=56.05 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+|+|.|+.|.||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 323
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.93 E-value=0.049 Score=53.98 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 324
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.89 E-value=0.056 Score=54.56 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=23.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|.|++|.||||+|+.++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988663
No 325
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.89 E-value=0.054 Score=57.39 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=22.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|.|.|++|.||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988664
No 326
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.88 E-value=0.069 Score=52.82 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 327
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.81 E-value=0.078 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEEecCCchhHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
.+++|+|+.|.|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 328
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.77 E-value=0.045 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|+|.|++|.||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988764
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.67 E-value=0.05 Score=54.59 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=24.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcccc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFD 237 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1109)
++++|.|+.|.|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 57899999999999999999987764443
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.64 E-value=0.066 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=22.2
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+|+|.|++|.||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999988765
No 331
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.62 E-value=0.047 Score=55.89 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++|+|+|+.|+|||||++.+......
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3578999999999999999999886543
No 332
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.60 E-value=0.046 Score=54.53 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=18.6
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|.|.|++|.||||+|+.+..++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987654
No 333
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.59 E-value=0.15 Score=56.15 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=52.4
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADISIWNVDDGINIIGSRL 288 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1109)
.+++|+|..|.|||||++.+...+.. -.+.+.+....+.... . . .................+.+.|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~-~-----------~~~i~~~~ggg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-H-H-----------KNYTQLFFGGNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-S-C-----------SSEEEEECBTTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-c-c-----------hhEEEEEeCCChhHHHHHHHHh
Confidence 57999999999999999998876543 3455655533211100 0 0 0000000001223455667778
Q ss_pred cCCCCceEeccCCCHHHHHHHH
Q 001277 289 RQKKVLLVIDDVADVEQLQNLA 310 (1109)
Q Consensus 289 ~~k~~LlVLDdv~~~~~~~~l~ 310 (1109)
..++=+|++|.+.+.+.++.+.
T Consensus 238 ~~~p~ilildE~~~~e~~~~l~ 259 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFYN 259 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHHH
T ss_pred hhCCCEEEEcCCChHHHHHHHH
Confidence 8889999999998765555443
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.56 E-value=0.098 Score=53.61 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=24.6
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..+|+|.|+.|.||||+|+.+..++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999887654
No 335
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.56 E-value=0.076 Score=53.32 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=30.6
Q ss_pred hhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 192 SRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 192 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.-+..+..++.. -+..+.+.|+|++|.||||+|.++++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 335566666542 223457999999999999999999987753
No 336
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.51 E-value=0.36 Score=55.52 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=28.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...+++|+|..|+|||||++.++..+... .+.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 45799999999999999999999877543 4455553
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.50 E-value=0.068 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.213 Sum_probs=22.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
....|+|+|++|.||||+|+.+..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999886
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.48 E-value=0.066 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|+|.|++|.||||+|+.+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.48 E-value=0.053 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|.|.|++|.||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988764
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.45 E-value=0.075 Score=53.09 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=22.6
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...|+|.|++|.||||+|+.++.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988663
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.43 E-value=0.073 Score=54.13 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+|+|.|++|.||||+|+.++.++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 342
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.37 E-value=0.24 Score=56.34 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=28.6
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccc-cceEEeeechh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEF-DGSTFLANVRE 247 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~ 247 (1109)
...++|.|.+|+|||+|+..+++.+.... +.++|. .+.+
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGE 192 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE 192 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESC
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCC
Confidence 46799999999999999999998775433 344443 3433
No 343
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.36 E-value=0.053 Score=55.33 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..++|+|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999988763
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.34 E-value=0.079 Score=54.18 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.+|+|.|++|.||||+|+.+..++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999999877653
No 345
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.31 E-value=0.079 Score=60.40 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=35.5
Q ss_pred cccccchhhHHHHHhhhccc------------CCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 185 KELVGIDSRLEKLRFLIATE------------SSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..++|.+...+.+...+... ....+-|.++|++|+||||+|++++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 35677777666665444210 0124568899999999999999999877543
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.27 E-value=0.073 Score=52.15 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.|+|.|++|.||||+|+.+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988764
No 347
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.25 E-value=0.45 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.9
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.++|.|++|.||||+|+.++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999988866
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.22 E-value=0.066 Score=53.92 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 349
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.18 E-value=0.23 Score=56.73 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=29.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc-ccceEEeeechh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE-FDGSTFLANVRE 247 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~ 247 (1109)
+...++|.|.+|+|||+|+..+++.+... -+.++|. .+.+
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGE 204 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGE 204 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESC
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-Eccc
Confidence 34568999999999999999999987543 3444554 3433
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.14 E-value=0.087 Score=52.87 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|.|++|.||||+|+.+..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 351
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.11 E-value=0.086 Score=53.94 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=24.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..+|+|.|+.|.||||+|+.+..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877543
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.10 E-value=0.074 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...|.|.|++|.||||+|+.++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988764
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.07 E-value=0.085 Score=56.10 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=23.1
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|.|.|++|.||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.07 E-value=0.088 Score=53.42 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|.|++|.||||+|+.+..++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 355
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.00 E-value=0.099 Score=53.48 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=23.8
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...+|+|+|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988665
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.00 E-value=0.09 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
....+|+|+|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999998874
No 357
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.94 E-value=0.08 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.2
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+++|+|+.|.|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 358
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.92 E-value=0.083 Score=54.74 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|+|+|+.|.||||+|+.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987653
No 359
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.87 E-value=0.083 Score=53.75 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
+|+|+|+.|.||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999887
No 360
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.86 E-value=0.099 Score=53.35 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=22.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+|+|+|++|.||||+|+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987643
No 361
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.83 E-value=0.12 Score=55.75 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+|.|.|++|.||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 362
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.79 E-value=0.13 Score=53.29 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+++|.|.+|.|||||++.++.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999876543
No 363
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.78 E-value=0.086 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=22.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+|+|+|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.73 E-value=0.091 Score=52.81 Aligned_cols=25 Identities=32% Similarity=0.617 Sum_probs=22.3
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
+|+|.|+.|.||||+|+.+..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987743
No 365
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.73 E-value=0.094 Score=63.25 Aligned_cols=52 Identities=19% Similarity=0.401 Sum_probs=42.0
Q ss_pred CcccccccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 180 KPEILKELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 180 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.|.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3445678999999888888777643 578999999999999999999866443
No 366
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.72 E-value=0.22 Score=55.59 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=29.1
Q ss_pred HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 196 KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
++...+........+|+|+|.+|+|||||+..+...+..
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 333344333456789999999999999999998876644
No 367
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.72 E-value=0.091 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=23.2
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|+|+.|.|||||++.++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997663
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.72 E-value=0.094 Score=55.46 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+|+|.|++|.||||+|+.+...+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4578999999999999999999886653
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.71 E-value=0.13 Score=56.26 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=32.2
Q ss_pred ccchhhHHHHHhhhccc--CCCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 188 VGIDSRLEKLRFLIATE--SSDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 188 vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
+|-...+..+...+... .....+|+|.|..|.||||||+.+...+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44444455444333322 345679999999999999999998876653
No 370
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.64 E-value=0.12 Score=54.32 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=26.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...++.|.|.+|+||||||..++......=..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468999999999999999888765544323444543
No 371
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.62 E-value=0.11 Score=51.58 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=23.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+|+|+|+.|.||||+|+.+...+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3468999999999999999999987643
No 372
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.52 E-value=0.25 Score=54.82 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=28.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 45799999999999999999999877643 3445543
No 373
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.48 E-value=0.08 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=19.7
Q ss_pred CeeEEEEEecCCchhHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAY 229 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~ 229 (1109)
...+++|+|+.|.|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 374
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.44 E-value=0.08 Score=55.72 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 375
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.44 E-value=0.11 Score=53.89 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...+++|+|+.|.|||||++.++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987543
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.40 E-value=0.089 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.039 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...|.|.|++|.||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 377
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.36 E-value=0.15 Score=55.30 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=28.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...+++|+|++|+||||+++.++..+... .+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45799999999999999999999876653 4445543
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.33 E-value=0.092 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.2
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...|.|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998865
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.21 E-value=0.076 Score=54.43 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
+|+|.|+.|.||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.20 E-value=0.11 Score=52.25 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+|+|+|+.|.||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999988763
No 381
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.16 E-value=0.12 Score=56.39 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.+.++|+|.|=||+||||.|--++..++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 35799999999999999999888776654
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.14 E-value=0.11 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 383
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.12 E-value=0.11 Score=53.07 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.0
Q ss_pred eEEEEEecCCchhHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.12 E-value=0.12 Score=52.18 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
+|+|.|+.|.||||+|+.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987744
No 385
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.12 E-value=0.15 Score=53.22 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=27.0
Q ss_pred HHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 196 KLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.|..+|..+-....+++|+|.+|+||||||+.++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4444443222345689999999999999999998753
No 386
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.11 E-value=0.21 Score=51.28 Aligned_cols=41 Identities=32% Similarity=0.285 Sum_probs=29.7
Q ss_pred hHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 193 RLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 193 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..+.+...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 17 ~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 17 LAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34444444432 256899999999999999999988876544
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.07 E-value=0.14 Score=52.41 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=23.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...+|.|.|+.|.||||+|+.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999998775
No 388
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.98 E-value=0.092 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.3
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.++++|+|+.|.|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36799999999999999999987654
No 389
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.95 E-value=0.088 Score=58.01 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
....++|+|.+|+|||+|+..+++.+...
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 34678999999999999999999877543
No 390
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.92 E-value=0.22 Score=51.39 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
....|+|+|.+|+|||||+..+.......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46889999999999999999988765433
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.82 E-value=0.11 Score=54.81 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=23.3
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|+|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998764
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.68 E-value=0.12 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999988754
No 393
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.67 E-value=0.15 Score=55.68 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=24.9
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
....+|+|.|..|.|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45679999999999999999999886653
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.66 E-value=0.13 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..|.|.|++|.||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 395
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.52 E-value=0.16 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+|+|.|..|.||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 396
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.51 E-value=0.41 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=18.1
Q ss_pred EEEEEecCCchhHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
++.|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5679999999999999775443
No 397
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.51 E-value=0.17 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...+++|+|+.|.|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999999885
No 398
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.47 E-value=0.12 Score=54.68 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...+|.|+|++|.||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988764
No 399
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.37 E-value=0.64 Score=53.98 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
...++|+|+|.+|+||||++..++..++.+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 346799999999999999999998877654
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.33 E-value=0.23 Score=53.92 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=28.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 45799999999999999999999876543 3445543
No 401
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.33 E-value=0.13 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+++|+|+.|.|||||++.+.....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987653
No 402
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.30 E-value=0.15 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+|+|.|+.|.||||+|+.+..++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998866
No 403
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.29 E-value=0.21 Score=55.53 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 194 LEKLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 194 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
...|..+|. .+-...+++.|.|.+|+||||||..++......=..++|+.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445555554 22234578999999999999999998876654433455654
No 404
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.26 E-value=0.9 Score=52.57 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=23.8
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
+.+.|.|.+|.||||++..+...+...-
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999888765543
No 405
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.24 E-value=0.18 Score=48.93 Aligned_cols=26 Identities=38% Similarity=0.316 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+++|.|+.|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999999876
No 406
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.18 E-value=0.16 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=22.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+|+|.|+.|.||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988664
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.16 E-value=0.16 Score=54.56 Aligned_cols=24 Identities=25% Similarity=0.554 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...+|+|.|+.|.||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999883
No 408
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.15 E-value=0.16 Score=52.71 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..+|+|.|++|.||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988764
No 409
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.11 E-value=0.13 Score=50.58 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
++++|+|..|.|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999998876543
No 410
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.07 E-value=0.16 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=22.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988764
No 411
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.06 E-value=0.17 Score=52.81 Aligned_cols=26 Identities=23% Similarity=0.050 Sum_probs=22.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...|.|.|++|.||||+|+.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 412
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.01 E-value=0.17 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998866
No 413
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.01 E-value=0.13 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998855
No 414
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.86 E-value=0.18 Score=49.72 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.++++|+|..|.|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999887654
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.83 E-value=0.17 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.9
Q ss_pred EEEEEecCCchhHHHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 416
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=89.77 E-value=2 Score=48.39 Aligned_cols=48 Identities=25% Similarity=0.220 Sum_probs=33.9
Q ss_pred cccccchhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 185 KELVGIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 185 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..++|....+.++.+.+..-...-..|.|.|.+|+|||++|+.+...-
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 357787777777766655322222335899999999999999887743
No 417
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.76 E-value=0.84 Score=54.27 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.4
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
+++.|.|.+|.||||++..+...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 688999999999999999988866544
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.68 E-value=0.19 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.7
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 419
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.66 E-value=0.27 Score=53.31 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.8
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
...+++|.|.+|+|||||++.++..+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34689999999999999999998876654
No 420
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.55 E-value=0.13 Score=55.54 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=20.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+..+|+|.|..|.||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.51 E-value=0.16 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.4
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
++|.|+|+.|+||||||+.++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999988653
No 422
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.39 E-value=0.17 Score=50.74 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=21.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHHh
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988664
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.21 E-value=0.27 Score=54.98 Aligned_cols=28 Identities=32% Similarity=0.202 Sum_probs=24.0
Q ss_pred CCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 205 SSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
-...++++|+|++|.|||||++.++...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455799999999999999999999754
No 424
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.05 E-value=0.25 Score=53.93 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
....+|+|+|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988765
No 425
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.04 E-value=0.31 Score=51.29 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=28.9
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.-+..++....+....|.++|++|.|||.+|.++++.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44666665432344579999999999999999999853
No 426
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.03 E-value=0.15 Score=55.67 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.9
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.++|.|+|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999988653
No 427
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.75 E-value=0.19 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
...++.|.|.+|+||||+|..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999887654
No 428
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.58 E-value=0.38 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=23.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999988766
No 429
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.54 E-value=0.16 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=16.5
Q ss_pred eeEEEEEecCCchhHHHHHHHH-HHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAY-DLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 232 (1109)
..+++|+|+.|.|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.46 E-value=0.26 Score=51.39 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
....+|+|.|+.|.||||+++.++.++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998865
No 431
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.45 E-value=0.22 Score=53.63 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.1
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998755
No 432
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.35 E-value=1.5 Score=51.32 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=28.2
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhcccc-ceEEe
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHEFD-GSTFL 242 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~ 242 (1109)
....++.|.|.+|+||||||..++.....+.. .++|+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~ 277 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA 277 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE
Confidence 34568999999999999999999887765433 34444
No 433
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.24 E-value=0.34 Score=56.31 Aligned_cols=28 Identities=4% Similarity=-0.114 Sum_probs=25.0
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+|.+.|+.|.||||+|++++.++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999998864
No 434
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.24 E-value=0.42 Score=64.03 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=33.5
Q ss_pred HHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 196 KLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 196 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
.|..+|. .+-...+.|.|+|++|+|||+||.+++.....+=..++|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4555554 22235679999999999999999999886654433455664
No 435
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=88.21 E-value=2.4 Score=45.26 Aligned_cols=49 Identities=8% Similarity=0.113 Sum_probs=29.8
Q ss_pred CcHHHHHHHHhcceEEEEeccccccchhhHHHHHHHHHhccCCceEEeEEeecc
Q 001277 57 ISPNLLEAIEESRISIIVLSKNYASSTWCLDELVKIVECKKRDHEIFPIFYDVE 110 (1109)
Q Consensus 57 ~~~~l~~~i~~s~~~ivv~S~~y~~s~~c~~El~~~~~~~~~~~~v~pv~~~v~ 110 (1109)
...++.+.+++++..|.|+.-.-..+..+ .++...+ .+..++-|+=+.|
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l----~~kp~ilVlNK~D 61 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL----KNKPRIMLLNKAD 61 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC----SSSCEEEEEECGG
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH----CCCCEEEEEECcc
Confidence 44688899999999998887654444444 2344443 2234555554444
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.14 E-value=0.38 Score=51.55 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=23.3
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++.|+|.+|+||||||..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999998875543
No 437
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.06 E-value=0.32 Score=50.48 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=24.8
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+|+|.|+.|.||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999998765
No 438
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.03 E-value=0.26 Score=52.97 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..++|.|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998865
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.01 E-value=0.25 Score=53.60 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
.+|.|.|++|.||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998874
No 440
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.98 E-value=0.31 Score=55.13 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
..++|.|.+|+|||+|+.++++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 45789999999999999998886554
No 441
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.98 E-value=0.22 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.159 Sum_probs=21.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
.+++|+|+.|.|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998865
No 442
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.89 E-value=0.25 Score=51.61 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
.. .+++|+|+.|.|||||.+.++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 35 7899999999999999999886
No 443
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.85 E-value=0.22 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.019 Sum_probs=21.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
.+.|.|.|..|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999988754
No 444
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.78 E-value=0.65 Score=51.36 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=24.9
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.+..+|+|+|.+|.|||||+..+...+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999876654
No 445
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.77 E-value=0.46 Score=51.34 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=28.1
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..++++|+|.+|+||||++..++..++.. ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 45799999999999999999999877653 3445443
No 446
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.77 E-value=0.39 Score=52.75 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=27.8
Q ss_pred HHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 195 EKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
..|..+|..+-....++.|+|.+|+||||||..++....
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 344444432223456899999999999999999887653
No 447
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.72 E-value=0.45 Score=48.63 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=21.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 210 MMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
.|.+.|.||+||||+|..++.....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47789999999999998888876544
No 448
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.62 E-value=0.31 Score=54.18 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=27.4
Q ss_pred HHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 197 LRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
|..+|..+-....++.|+|.+|+|||||++.++...
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334443333456899999999999999999998866
No 449
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.59 E-value=0.23 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.59 E-value=0.31 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.1
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998764
No 451
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.55 E-value=0.46 Score=51.71 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=25.2
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
...++|+|+|-||+||||+|..++..++..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 356889999999999999999988877654
No 452
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.47 E-value=0.7 Score=42.98 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=10.8
Q ss_pred EeccCccCc--ccCCcccCCCCCcEEeeec
Q 001277 650 LFLDGTSIA--EVPSSIELLTGLQLLNLNN 677 (1109)
Q Consensus 650 L~L~~~~i~--~lp~~i~~l~~L~~L~L~~ 677 (1109)
++.+++.++ .+|..+ ..+|+.|+|++
T Consensus 13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~ 40 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAF--PVDTTELVLTG 40 (130)
T ss_dssp EECCSSCCCTTTSCSCC--CTTCSEEECTT
T ss_pred EEeCCCCCccccCCCCC--CcCCCEEECCC
Confidence 344444444 444322 12344444444
No 453
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.45 E-value=1.7 Score=43.88 Aligned_cols=110 Identities=10% Similarity=0.047 Sum_probs=51.7
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhhccCc-ccccccccHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLKLADI-SIWNVDDGINIIG 285 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~l~ 285 (1109)
...+..++|..|.||||.|...+.+...+-..+.++.-... .+.+ ...+.+.+...... ...+.. .+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~g-----e~~i~s~~g~~~~a~~~~~~~----~~~ 95 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYS-----EEDVVSHNGLKVKAVPVSASK----DIF 95 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGG----GGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Ccch-----HHHHHhhcCCeeEEeecCCHH----HHH
Confidence 35788899999999999998877766544322333321111 1111 11233333211110 001111 122
Q ss_pred HHHcCCCCceEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEeCCch
Q 001277 286 SRLRQKKVLLVIDDVAD--VEQLQNLARKRDWFGPGSKIVITTRDKQ 330 (1109)
Q Consensus 286 ~~L~~k~~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 330 (1109)
+.+.++-=+|++|.+.- .++++.+.... ..|..||+|-++..
T Consensus 96 ~~~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp GGCCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred HHHhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 22223334999999743 33444333211 24779999999643
No 454
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.37 E-value=0.47 Score=55.88 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.8
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
...+|+|+|+.|.|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3478999999999999999999998764
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.31 E-value=0.31 Score=48.76 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.0
Q ss_pred eeEEEEEecCCchhHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998863
No 456
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=87.29 E-value=3 Score=43.19 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=26.7
Q ss_pred chhhHHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 190 IDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 190 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
|+.+.+.+..++.. +-+.|+|..|.|||.+|..++...
T Consensus 95 ~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 44455555555532 127789999999999998887654
No 457
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.25 E-value=0.24 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...+++|+|+.|.|||||.+.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999998875
No 458
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.20 E-value=0.48 Score=47.19 Aligned_cols=25 Identities=24% Similarity=0.080 Sum_probs=20.8
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
.++.|+|+.|.||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999977766553
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.20 E-value=0.48 Score=55.65 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=25.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEF 236 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1109)
...+|.++|++|.||||+|+.++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999999999999999998775544
No 460
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.96 E-value=0.55 Score=49.86 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
++|+|.|-||+||||+|..++..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578889999999999999998877654
No 461
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.94 E-value=0.23 Score=56.64 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
....+|.|+|++|.||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999987654
No 462
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=86.91 E-value=0.31 Score=55.63 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.6
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
..++|+|+|.+|+||||+|..++...+.+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999988866543
No 463
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.75 E-value=0.37 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.8
Q ss_pred eEEEEEecCCchhHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
+.|+|+|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998876
No 464
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.69 E-value=0.38 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHh
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 465
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.66 E-value=0.55 Score=50.56 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=23.4
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHE 235 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1109)
++|+|.|-||+||||+|..++..++..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 678889999999999999998877654
No 466
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.60 E-value=0.28 Score=51.16 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+++|+|..|.|||||++.++.-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999988643
No 467
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.59 E-value=0.53 Score=47.77 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=25.1
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhcccc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISHEFD 237 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1109)
..|+|-|.-|+||||+++.+++++...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999998865543
No 468
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.53 E-value=0.32 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.5
Q ss_pred eeEEEEEecCCchhHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
..+++|+|..|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998864
No 469
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.47 E-value=0.28 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.7
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..+++|+|+.|.|||||++.++.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998875
No 470
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.46 E-value=0.34 Score=52.34 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=23.8
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
....+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345789999999999999999998866
No 471
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.33 E-value=0.67 Score=48.31 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=27.3
Q ss_pred CeeEEEEEe-cCCchhHHHHHHHHHHHhccccceEEee
Q 001277 207 DVRMMGIWG-MGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 207 ~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
..++|+|+| -||+||||+|..++..++......+.+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 357888875 6999999999999998876533344443
No 472
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.27 E-value=0.81 Score=50.44 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=24.7
Q ss_pred CCeeEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 206 SDVRMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
....+++|+|.+|+|||||.+.+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45679999999999999999999876543
No 473
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.27 E-value=0.29 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...+++|+|+.|.|||||.+.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 474
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.25 E-value=0.34 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
...+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998874
No 475
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.20 E-value=0.39 Score=46.68 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.8
Q ss_pred eEEEEEecCCchhHHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999998875
No 476
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.15 E-value=1.1 Score=59.17 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=56.0
Q ss_pred HHHHhhhcc-cCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEeeechhhhcccCChHHHHHHHHHHHhh-ccCc
Q 001277 195 EKLRFLIAT-ESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLANVREKSEKEGSVVSLQKQLLSDLLK-LADI 272 (1109)
Q Consensus 195 ~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~ 272 (1109)
..|...|.. +-...++|-|+|+.|.||||||.++.......=..++|+. .+.. +... .++.++- ....
T Consensus 1417 ~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~-----~e~~--~~~~---~~~~~Gv~~~~l 1486 (1706)
T 3cmw_A 1417 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-----AEHA--LDPI---YARKLGVDIDNL 1486 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-----TTSC--CCHH---HHHHTTCCGGGC
T ss_pred HHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe-----cCCC--CCHH---HHHHcCCCHHHe
Confidence 345555542 2345689999999999999999998876666555677775 1111 1111 1444431 1111
Q ss_pred ---ccccccccHHHHHHHHc-CCCCceEeccC
Q 001277 273 ---SIWNVDDGINIIGSRLR-QKKVLLVIDDV 300 (1109)
Q Consensus 273 ---~~~~~~~~~~~l~~~L~-~k~~LlVLDdv 300 (1109)
.+..-++....+...++ +..-+||+|-|
T Consensus 1487 ~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1487 LCSQPDTGEQALEICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred EEeCCCcHHHHHHHHHHHHHcCCCCEEEEccH
Confidence 11222444555555554 46678999987
No 477
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=86.14 E-value=2 Score=44.38 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=17.5
Q ss_pred eEEEEEecCCchhHHHHHHHH
Q 001277 209 RMMGIWGMGGLGKTTLARVAY 229 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~ 229 (1109)
+.+.|.|..|.||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 578999999999998765544
No 478
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.10 E-value=0.3 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..+++|+|+.|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 479
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.08 E-value=0.31 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...+++|+|+.|.|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999875
No 480
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.05 E-value=1 Score=59.55 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=37.1
Q ss_pred cchhhHHHHHhhhc-ccCCCeeEEEEEecCCchhHHHHHHHHHHHhccccceEEee
Q 001277 189 GIDSRLEKLRFLIA-TESSDVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFLA 243 (1109)
Q Consensus 189 Gr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1109)
+...-..+|..++. .+-....+|.|.|.+|+||||||..++.....+=..+.|+.
T Consensus 712 ~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 712 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 34444556666664 23334578999999999999999999887665323345553
No 481
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.04 E-value=0.3 Score=51.89 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.3
Q ss_pred eeEEEEEecCCchhHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
..+++|+|+.|.|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999998763
No 482
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.01 E-value=0.27 Score=51.71 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=25.3
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
..+++|+|+.|.|||||.+.++.-+... +.+++
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 4589999999999999999988654433 44444
No 483
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.91 E-value=0.35 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCchhHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...+++|+|..|.|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 484
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=85.90 E-value=0.27 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.1
Q ss_pred eeEEEEEecCCchhHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDL 231 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1109)
..+++|+|+.|.|||||.+.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998763
No 485
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.87 E-value=0.31 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..+++|+|+.|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 486
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=85.84 E-value=0.43 Score=48.28 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=23.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHhc
Q 001277 209 RMMGIWGMGGLGKTTLARVAYDLISH 234 (1109)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1109)
.+|.|.|+.|.||||+|+.++.++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998753
No 487
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.80 E-value=0.39 Score=48.34 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
.-.|+|+|.+|+|||||.+.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 34689999999999999999886
No 488
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.78 E-value=0.32 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.9
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
..+++|+|+.|.|||||.+.++..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999988643
No 489
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.72 E-value=0.32 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.8
Q ss_pred eeEEEEEecCCchhHHHHHHHHH
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
..+++|+|..|.|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 490
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.57 E-value=0.33 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...+++|+|+.|.|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 491
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.55 E-value=0.68 Score=52.53 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=27.4
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHHhccccceEEe
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLISHEFDGSTFL 242 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1109)
..++++|+|.+|+||||++..++..++.. ...+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vll 131 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLL 131 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 45789999999999999999999877654 334444
No 492
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=85.52 E-value=0.6 Score=52.78 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=21.7
Q ss_pred eeEEEEEecCCchhHHHHHHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLARVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1109)
...++|.|.+|+|||+|+.++++...
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHH
Confidence 35678999999999999998887654
No 493
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.41 E-value=0.35 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.2
Q ss_pred CeeEEEEEecCCchhHHHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYDLI 232 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1109)
...+++|+|+.|.|||||++.++.-+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999987643
No 494
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=85.38 E-value=0.92 Score=51.94 Aligned_cols=38 Identities=16% Similarity=0.021 Sum_probs=25.1
Q ss_pred eeEEEEEecCCchhHHHHH-HHHHHHhccccceEEeeechh
Q 001277 208 VRMMGIWGMGGLGKTTLAR-VAYDLISHEFDGSTFLANVRE 247 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~-~v~~~~~~~f~~~~~~~~~~~ 247 (1109)
...++|.|.+|+|||+||. .+++... -+..+.+..+.+
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGe 213 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQ 213 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESC
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCC
Confidence 3568999999999999964 6666442 343434444443
No 495
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=85.38 E-value=0.63 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=20.6
Q ss_pred eeEEEEEecCCchhHHHH-HHHHHHHh
Q 001277 208 VRMMGIWGMGGLGKTTLA-RVAYDLIS 233 (1109)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA-~~v~~~~~ 233 (1109)
...++|.|.+|+|||+|| ..+.+...
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 456899999999999996 56666554
No 496
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.37 E-value=0.41 Score=54.03 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=27.0
Q ss_pred HHHHHhhhcccCCCeeEEEEEecCCchhHHHHHHHHH
Q 001277 194 LEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 194 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
+..|..+|..+-....++.|+|.+|+|||||+..++-
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3455555543333456999999999999999998764
No 497
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.36 E-value=0.43 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEecCCchhHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
.|+++|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998876
No 498
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.21 E-value=0.43 Score=53.98 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHhhhcccCCCeeEEEEEecCCchhHHHHHHHHH
Q 001277 197 LRFLIATESSDVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
+.+.|........+++|+|..|+|||||.+.+..
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3334432223456999999999999999999986
No 499
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.19 E-value=0.35 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCchhHHHHHHHHH
Q 001277 207 DVRMMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
...+++|+|..|.|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 500
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.08 E-value=0.38 Score=47.76 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=18.8
Q ss_pred EEEEEecCCchhHHHHHHHHH
Q 001277 210 MMGIWGMGGLGKTTLARVAYD 230 (1109)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~ 230 (1109)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
Done!