BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001278
         (1109 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
           OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
          Length = 1042

 Score =  236 bits (603), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 235/817 (28%), Positives = 420/817 (51%), Gaps = 69/817 (8%)

Query: 1   MGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQC 60
           MGLLL+EK E +S+ EE++ S +E+     RE+SA++ A +EA+KRE++L++ + + K+C
Sbjct: 80  MGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKEC 139

Query: 61  VADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRK 120
           ++ LEK L +M  E A+TK+ +  T+++A+ ++     K  + E K  AAEA  AE NR 
Sbjct: 140 ISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEANRY 199

Query: 121 SSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSEL 180
               E KL+E+ESRE  + R   S  +E E  E     +R+ L E  K LQ   ERL + 
Sbjct: 200 HRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDA 259

Query: 181 RRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEI-----NSRLAELVV 235
           + +LNQRE      + I   + ++L ELEK +D + +  +E          N  +A  + 
Sbjct: 260 QVSLNQRE------DHIF-ARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALC 312

Query: 236 KEREADCLRS-----------------------------TVEMKEKRLLTIEEKLNARER 266
            +RE  C  S                             ++  KE+ LL  EEK+ ++E 
Sbjct: 313 AKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKES 372

Query: 267 VEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERR 326
             IQ +L +Q  IL  ++ + E ELE K KS+E E+ SK  A + +E +I  RE+ +  +
Sbjct: 373 ELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEK 432

Query: 327 EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEI 386
           E  L+ +S  + EKE D+  +  ++ E+EK + A E+ +  +   L  +KE L+ L +E+
Sbjct: 433 EHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLEL 492

Query: 387 DQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQ 446
            Q  +    +  ++    QKL+  + E SEL  L+ +LK++++  R Q+  +L E + L+
Sbjct: 493 QQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLK 552

Query: 447 QDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREI 506
            ++ KFE EWE +D KR+E+ KE E I  +++          + +K+E  A+R+  + ++
Sbjct: 553 VEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDV 612

Query: 507 EAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQE 566
           E++  ++E F   M  E      K + +R   L   EMQ+   E  + N+R+++E   ++
Sbjct: 613 ESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRD 672

Query: 567 RTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRK 626
           R + FE++++     I  LKE+AE E++ ++ E  +L+ E+ E+K++RE+ + +   ++ 
Sbjct: 673 REKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKD 732

Query: 627 DIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARN 686
            ++EL +   +L   R   + E++     +E+    +N    +    ++ +QL +     
Sbjct: 733 SVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSN----- 787

Query: 687 DIPLPQVAERCLGNRQGDVAAPYD-------SNISNSHGGMNLG-------RADSGGHMS 732
              L +  E+    +Q  V+   +       S +SNS  G N            S    S
Sbjct: 788 ---LERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSMERQNGLTPSSATPFS 844

Query: 733 WLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPT 769
           W+++CT+ IF  SP K      ++++   E +  VP+
Sbjct: 845 WIKRCTNLIFKTSPEK------STLMHHYEEEGGVPS 875


>sp|Q7Z7A1|CNTRL_HUMAN Centriolin OS=Homo sapiens GN=CNTRL PE=1 SV=2
          Length = 2325

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 78/144 (54%), Gaps = 14/144 (9%)

Query: 125  EMKLQELESRESVIKRERLSLVT----------EREAHEAAFYKQREDLREWEKKLQ--I 172
            E K Q+L+  ++ I+  +L LV           ERE+ E+     +  L+E + +L+  +
Sbjct: 1923 ETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKEL 1982

Query: 173  GDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAE 232
             D++ S+L + L+ + + A E  R L+++ER  E LEK +  +  +L ERE ++  +  E
Sbjct: 1983 TDQK-SKLDQVLS-KVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGE 2040

Query: 233  LVVKEREADCLRSTVEMKEKRLLT 256
            L+  ++EAD +R+   +   + LT
Sbjct: 2041 LLALQKEADSMRADFSLLRNQFLT 2064


>sp|Q8CDI6|CD158_MOUSE Coiled-coil domain-containing protein 158 OS=Mus musculus
           GN=Ccdc158 PE=2 SV=1
          Length = 1109

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 181/359 (50%), Gaps = 72/359 (20%)

Query: 176 RLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKER------------- 222
           +LS+L  T++Q   +  E++R+ + K   +EELEK++ L++S+L E              
Sbjct: 317 QLSDLESTVSQLRSELRESKRMYEDK---IEELEKQLVLANSELTEARTERDQFSQESGN 373

Query: 223 -EDEINSRLAELVVKEREADCLRSTVEMKEKRL--------LTIEE---KLNARERVEIQ 270
            +D++   LA+L  +E+E     S  + + KRL        +TI+    +L+ R  +E+Q
Sbjct: 374 LDDQLQKLLADLHKREKEL----SLEKEQNKRLWDRDTGNSITIDHLRRELDDR-NMEVQ 428

Query: 271 KLLDDQRAILDAKQQEFELELEEKRKSIEEEMRS--KISALDQQEFEISHREEKLERREQ 328
           +L     A+L A + E + ++E +  +I+ +  S  K+S+L  Q   +   +E L +  +
Sbjct: 429 RL----EALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ---LESTKEMLRKVVE 481

Query: 329 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQ 388
            L  K   ++  E  ++    S++E+E+ ++A   ++   + ++    + LQ LK E D 
Sbjct: 482 ELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH 541

Query: 389 IESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH----ED 444
           + +        +Q EC+ LK+   EK +++ +   L+QQIE        L+ +H      
Sbjct: 542 LRN--------VQTECEALKLQMAEKDKVIEI---LRQQIENMTQ----LVGQHGRTAGA 586

Query: 445 LQQDREKFEK----------EWEVLDEKRD-EINKEQEKIADEKKKLEKLQHSAEERLK 492
           +Q ++ + EK          E+++L +K+D +I + + +++D + +  KL ++  ERL+
Sbjct: 587 MQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR 645


>sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 OS=Homo sapiens GN=AKAP9 PE=1 SV=3
          Length = 3911

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 147/309 (47%), Gaps = 70/309 (22%)

Query: 117 VNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDER 176
           +N   +EL +KLQ+  S++  +K E L L+ E    + A  +Q EDL E   +L    E+
Sbjct: 503 MNVAINELNIKLQDTNSQKEKLKEE-LGLILE---EKCALQRQLEDLVE---ELSFSREQ 555

Query: 177 LSELRRTLNQREVKANENERILKQKERDLE-------------ELEKKIDLSSSKLK--- 220
           +   R+T+ ++E K NE  + L   E DL+             EL+ + ++++ K+K   
Sbjct: 556 IQRARQTIAEQESKLNEAHKSLSTVE-DLKAEIVSASESRKELELKHEAEVTNYKIKLEM 614

Query: 221 -ERE-DEINSRLAELVVKEREADCLRSTVEMK-EKRLLTIEEKLNARERVEIQKLLDD-- 275
            E+E + +  R+AE   +E E + LR+ +    E+ L  ++E L    R+ I+KL D+  
Sbjct: 615 LEKEKNAVLDRMAE--SQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLG 672

Query: 276 -----------------------QRAILDAKQQEFELELEEKR-------KSIEEEMRSK 305
                                  ++  L  KQ +  LE+ + +        S  EEM  +
Sbjct: 673 IHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQ 732

Query: 306 ISALDQQEFEISHREEK----LERREQALDKKSD----RVKEKENDLAARLKSVKEREKF 357
           I+ L Q+E EI  +EEK    LE+  Q L  K++    ++KEKENDL  +   ++     
Sbjct: 733 INEL-QKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSI 791

Query: 358 VKAEEKKLE 366
           +K E+K LE
Sbjct: 792 LKDEKKTLE 800


>sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1
          Length = 2017

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 536 RKMLEEFEMQRMNQEAELLNRRDKMEKELQ---------ERTRTFEEKRERVLNDIAHLK 586
           RK L + E +R   E +L   RDK +  +Q         +R R+  E   R  +++AH  
Sbjct: 553 RKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSL 612

Query: 587 EVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQ 621
           +VA+ + +E++ ER++L+  + E++  R++L+E+Q
Sbjct: 613 QVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQ 647


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.125    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,948,984
Number of Sequences: 539616
Number of extensions: 17500767
Number of successful extensions: 240375
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1798
Number of HSP's successfully gapped in prelim test: 6960
Number of HSP's that attempted gapping in prelim test: 116078
Number of HSP's gapped (non-prelim): 51629
length of query: 1109
length of database: 191,569,459
effective HSP length: 128
effective length of query: 981
effective length of database: 122,498,611
effective search space: 120171137391
effective search space used: 120171137391
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 67 (30.4 bits)