Query 001278
Match_columns 1109
No_of_seqs 39 out of 41
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 20:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.4 1.3E-06 2.8E-11 106.4 63.5 22 417-438 618-639 (880)
2 KOG0161 Myosin class II heavy 99.3 3.3E-05 7.2E-10 101.0 76.2 556 82-659 906-1531(1930)
3 PRK02224 chromosome segregatio 99.2 4.5E-05 9.7E-10 93.3 72.1 93 43-139 148-240 (880)
4 TIGR00606 rad50 rad50. This fa 99.0 0.0006 1.3E-08 87.8 76.9 75 62-136 397-471 (1311)
5 TIGR00606 rad50 rad50. This fa 98.9 0.00083 1.8E-08 86.6 75.2 85 420-505 882-967 (1311)
6 PRK01156 chromosome segregatio 98.9 0.001 2.3E-08 82.0 71.2 45 34-79 140-186 (895)
7 TIGR02168 SMC_prok_B chromosom 98.9 0.0011 2.3E-08 82.0 79.5 49 612-660 993-1042(1179)
8 PRK03918 chromosome segregatio 98.8 0.0011 2.5E-08 81.0 69.2 46 144-189 242-287 (880)
9 PRK03918 chromosome segregatio 98.8 0.0015 3.2E-08 80.0 69.3 35 598-632 666-700 (880)
10 TIGR02168 SMC_prok_B chromosom 98.8 0.0019 4.2E-08 79.7 80.3 40 125-164 266-305 (1179)
11 PF12128 DUF3584: Protein of u 98.7 0.0044 9.6E-08 79.6 68.5 207 413-623 594-810 (1201)
12 KOG0161 Myosin class II heavy 98.6 0.01 2.3E-07 78.8 79.0 578 32-660 1091-1708(1930)
13 PRK01156 chromosome segregatio 98.6 0.0072 1.6E-07 74.9 66.0 49 613-661 682-730 (895)
14 COG1196 Smc Chromosome segrega 98.5 0.016 3.5E-07 74.3 74.6 76 6-81 232-310 (1163)
15 TIGR02169 SMC_prok_A chromosom 98.4 0.022 4.8E-07 71.1 79.4 72 589-660 956-1039(1164)
16 COG0419 SbcC ATPase involved i 98.2 0.059 1.3E-06 67.6 66.6 57 113-170 275-331 (908)
17 KOG4674 Uncharacterized conser 98.1 0.095 2.1E-06 69.5 70.8 416 12-462 925-1382(1822)
18 COG0419 SbcC ATPase involved i 98.0 0.12 2.6E-06 65.0 71.6 31 45-75 155-187 (908)
19 PF07888 CALCOCO1: Calcium bin 97.9 0.13 2.8E-06 61.9 48.3 43 618-660 409-451 (546)
20 COG1196 Smc Chromosome segrega 97.8 0.27 5.8E-06 63.6 79.0 148 40-194 195-342 (1163)
21 PF10174 Cast: RIM-binding pro 97.8 0.23 5E-06 62.1 65.0 471 68-562 5-532 (775)
22 PF07888 CALCOCO1: Calcium bin 97.6 0.3 6.4E-06 58.9 40.9 97 421-521 352-448 (546)
23 KOG1029 Endocytic adaptor prot 97.5 0.38 8.3E-06 59.6 33.7 217 281-521 316-566 (1118)
24 PF01576 Myosin_tail_1: Myosin 97.4 3.5E-05 7.5E-10 95.4 0.0 511 39-633 40-567 (859)
25 PF12128 DUF3584: Protein of u 97.0 2.3 4.9E-05 55.7 72.7 88 425-512 677-769 (1201)
26 KOG0250 DNA repair protein RAD 97.0 1.9 4.1E-05 55.5 34.2 117 366-482 326-443 (1074)
27 PF01576 Myosin_tail_1: Myosin 96.9 0.00026 5.6E-09 87.9 0.0 524 81-637 156-739 (859)
28 KOG0250 DNA repair protein RAD 96.5 4.4 9.5E-05 52.4 35.3 138 347-484 328-466 (1074)
29 PRK12704 phosphodiesterase; Pr 96.5 0.13 2.9E-06 61.5 18.8 78 284-368 59-136 (520)
30 PF00038 Filament: Intermediat 96.5 1.8 4E-05 47.5 35.0 185 375-560 2-200 (312)
31 KOG0018 Structural maintenance 96.5 4.6 0.0001 52.1 33.8 107 414-523 288-400 (1141)
32 PRK11637 AmiB activator; Provi 96.5 1.3 2.8E-05 51.4 26.2 53 225-277 83-135 (428)
33 PF00261 Tropomyosin: Tropomyo 96.5 0.58 1.3E-05 50.5 21.7 96 167-265 91-189 (237)
34 TIGR03319 YmdA_YtgF conserved 96.1 0.29 6.4E-06 58.5 18.8 76 284-366 53-128 (514)
35 PRK04863 mukB cell division pr 96.0 9.7 0.00021 51.4 42.1 147 61-212 232-399 (1486)
36 PRK00106 hypothetical protein; 95.9 0.71 1.5E-05 55.8 21.0 76 284-366 74-149 (535)
37 KOG0964 Structural maintenance 95.9 8.7 0.00019 49.5 35.1 271 248-521 170-502 (1200)
38 PF08317 Spc7: Spc7 kinetochor 95.8 1.9 4E-05 48.8 22.7 166 330-501 126-291 (325)
39 PF00261 Tropomyosin: Tropomyo 95.6 4.3 9.4E-05 43.9 25.5 100 109-215 12-111 (237)
40 PF10174 Cast: RIM-binding pro 95.5 11 0.00024 47.8 62.4 78 373-450 276-353 (775)
41 PRK12704 phosphodiesterase; Pr 95.4 0.9 1.9E-05 54.6 19.0 123 295-440 59-183 (520)
42 KOG0996 Structural maintenance 95.3 15 0.00033 48.2 42.7 264 240-515 336-612 (1293)
43 TIGR03319 YmdA_YtgF conserved 95.2 1.1 2.3E-05 53.9 19.0 62 298-362 56-117 (514)
44 PRK00106 hypothetical protein; 95.1 1.2 2.5E-05 54.0 18.8 87 297-400 76-162 (535)
45 PF12072 DUF3552: Domain of un 94.8 0.91 2E-05 48.1 15.2 70 290-359 61-130 (201)
46 KOG1029 Endocytic adaptor prot 94.7 17 0.00037 46.1 33.6 247 374-640 317-591 (1118)
47 PF10146 zf-C4H2: Zinc finger- 94.7 1.6 3.5E-05 47.7 17.1 106 562-681 4-109 (230)
48 KOG4643 Uncharacterized coiled 94.6 20 0.00044 46.5 41.9 226 426-661 315-558 (1195)
49 PHA02562 46 endonuclease subun 94.3 15 0.00032 43.5 35.5 44 428-471 360-403 (562)
50 KOG0933 Structural maintenance 94.2 25 0.00055 45.7 39.3 52 226-280 696-747 (1174)
51 KOG0977 Nuclear envelope prote 94.2 19 0.00041 44.2 27.6 311 64-433 68-384 (546)
52 PHA02562 46 endonuclease subun 93.4 21 0.00046 42.3 33.4 99 386-484 304-402 (562)
53 PF13851 GAS: Growth-arrest sp 93.2 14 0.0003 39.7 21.6 143 414-573 22-168 (201)
54 KOG0964 Structural maintenance 93.2 37 0.00079 44.3 36.9 299 140-455 173-489 (1200)
55 KOG4674 Uncharacterized conser 93.0 51 0.0011 45.6 73.0 461 98-589 710-1252(1822)
56 PRK04863 mukB cell division pr 92.0 62 0.0013 44.2 39.9 57 240-301 232-288 (1486)
57 PF09731 Mitofilin: Mitochondr 91.6 23 0.00049 42.8 21.6 47 649-697 429-475 (582)
58 PF12072 DUF3552: Domain of un 90.6 9 0.0002 40.8 15.2 60 308-367 72-131 (201)
59 PRK12705 hypothetical protein; 90.5 18 0.0004 44.0 19.4 59 292-357 62-120 (508)
60 KOG0977 Nuclear envelope prote 90.4 54 0.0012 40.5 35.6 109 284-403 87-195 (546)
61 KOG0612 Rho-associated, coiled 90.2 80 0.0017 42.2 46.1 67 341-407 625-693 (1317)
62 PF05557 MAD: Mitotic checkpoi 90.0 2.6 5.5E-05 52.3 12.2 120 102-221 90-210 (722)
63 TIGR03185 DNA_S_dndD DNA sulfu 88.9 69 0.0015 39.7 34.0 47 592-638 422-468 (650)
64 PF05483 SCP-1: Synaptonemal c 88.5 81 0.0018 40.0 68.6 310 145-473 231-567 (786)
65 COG1340 Uncharacterized archae 88.3 54 0.0012 37.7 32.8 54 328-381 30-83 (294)
66 PF05557 MAD: Mitotic checkpoi 86.9 7.9 0.00017 48.2 13.6 38 9-46 64-101 (722)
67 KOG0612 Rho-associated, coiled 86.6 1.3E+02 0.0029 40.4 43.0 124 358-488 541-665 (1317)
68 smart00787 Spc7 Spc7 kinetocho 86.3 69 0.0015 36.8 22.2 166 330-501 121-286 (312)
69 PF09755 DUF2046: Uncharacteri 84.6 87 0.0019 36.4 25.8 112 488-606 86-200 (310)
70 PF00038 Filament: Intermediat 83.8 76 0.0017 35.2 39.0 143 344-495 9-151 (312)
71 PF09726 Macoilin: Transmembra 83.1 1.5E+02 0.0031 37.9 27.7 54 291-352 543-597 (697)
72 PF13863 DUF4200: Domain of un 81.9 47 0.001 32.2 13.8 91 298-398 12-102 (126)
73 PF05262 Borrelia_P83: Borreli 81.6 76 0.0017 38.8 18.0 70 339-408 189-258 (489)
74 PRK09039 hypothetical protein; 81.2 52 0.0011 38.1 16.0 114 48-165 63-176 (343)
75 PF12718 Tropomyosin_1: Tropom 81.0 65 0.0014 33.1 14.9 95 115-220 10-104 (143)
76 TIGR02680 conserved hypothetic 80.9 2.3E+02 0.0049 38.7 26.6 79 40-120 744-822 (1353)
77 PF08317 Spc7: Spc7 kinetochor 79.0 1.3E+02 0.0027 34.5 20.4 55 374-428 206-260 (325)
78 PRK09039 hypothetical protein; 78.1 1.4E+02 0.0031 34.6 21.4 18 246-263 47-64 (343)
79 PRK12705 hypothetical protein; 78.0 1.8E+02 0.0039 35.8 21.2 60 284-347 65-124 (508)
80 PF00769 ERM: Ezrin/radixin/mo 77.0 95 0.0021 34.5 15.8 107 378-502 13-119 (246)
81 KOG0976 Rho/Rac1-interacting s 76.3 2.5E+02 0.0055 36.6 47.8 105 247-353 101-208 (1265)
82 KOG4643 Uncharacterized coiled 76.2 2.8E+02 0.006 37.0 51.1 50 118-167 169-225 (1195)
83 KOG0962 DNA repair protein RAD 75.8 3.1E+02 0.0068 37.4 60.7 84 538-633 993-1076(1294)
84 COG1579 Zn-ribbon protein, pos 75.3 1.5E+02 0.0032 33.4 23.0 91 438-532 94-184 (239)
85 PF05667 DUF812: Protein of un 74.7 2.4E+02 0.0051 35.5 25.5 207 199-423 324-544 (594)
86 PF09728 Taxilin: Myosin-like 74.1 1.7E+02 0.0037 33.6 35.9 66 577-642 230-309 (309)
87 COG1579 Zn-ribbon protein, pos 74.0 1.6E+02 0.0034 33.2 21.9 72 268-344 11-82 (239)
88 PF06818 Fez1: Fez1; InterPro 72.5 1.4E+02 0.0029 33.0 15.2 46 503-548 144-193 (202)
89 PF05701 WEMBL: Weak chloropla 72.3 2.4E+02 0.0052 34.5 49.5 301 336-662 98-408 (522)
90 COG1340 Uncharacterized archae 72.0 2E+02 0.0043 33.4 29.9 20 551-570 134-153 (294)
91 KOG0804 Cytoplasmic Zn-finger 71.1 1.4E+02 0.0031 36.4 16.0 109 426-557 347-455 (493)
92 TIGR01005 eps_transp_fam exopo 70.3 78 0.0017 39.6 14.7 71 83-153 186-264 (754)
93 PF11559 ADIP: Afadin- and alp 68.3 1.4E+02 0.003 30.2 15.7 72 334-408 75-146 (151)
94 PF04111 APG6: Autophagy prote 68.3 1E+02 0.0022 35.4 14.0 35 412-446 99-133 (314)
95 PRK04778 septation ring format 66.2 3.2E+02 0.007 33.6 39.8 62 421-482 350-411 (569)
96 PF04111 APG6: Autophagy prote 64.1 1.1E+02 0.0025 35.0 13.3 15 620-634 167-181 (314)
97 PF10146 zf-C4H2: Zinc finger- 64.1 1.7E+02 0.0036 32.6 14.1 93 410-502 6-104 (230)
98 PF10473 CENP-F_leu_zip: Leuci 63.8 1.9E+02 0.0041 30.2 19.1 68 424-491 29-96 (140)
99 KOG0994 Extracellular matrix g 63.6 5.3E+02 0.012 35.2 30.8 130 233-367 1607-1742(1758)
100 COG4026 Uncharacterized protei 62.6 92 0.002 35.0 11.6 83 414-500 118-205 (290)
101 KOG4673 Transcription factor T 61.8 4.6E+02 0.01 33.9 38.2 57 590-646 865-921 (961)
102 PF05701 WEMBL: Weak chloropla 61.6 3.8E+02 0.0083 32.9 49.1 147 357-521 282-428 (522)
103 PF15066 CAGE1: Cancer-associa 61.0 4E+02 0.0087 32.9 22.3 86 410-499 406-491 (527)
104 PF12126 DUF3583: Protein of u 59.8 3.2E+02 0.007 31.9 15.5 121 382-513 4-124 (324)
105 KOG0018 Structural maintenance 55.9 6.7E+02 0.015 33.9 52.6 214 426-654 652-898 (1141)
106 COG4942 Membrane-bound metallo 54.6 4.8E+02 0.01 31.8 30.2 73 380-455 174-246 (420)
107 PF02841 GBP_C: Guanylate-bind 53.8 3.7E+02 0.0081 30.3 16.2 14 57-70 38-51 (297)
108 PF07926 TPR_MLP1_2: TPR/MLP1/ 53.6 2.5E+02 0.0054 28.2 17.4 98 377-477 17-114 (132)
109 PF14988 DUF4515: Domain of un 52.1 3.5E+02 0.0077 29.6 15.7 111 515-625 7-127 (206)
110 PF00769 ERM: Ezrin/radixin/mo 51.8 2.2E+02 0.0049 31.6 12.6 48 97-144 4-51 (246)
111 TIGR01843 type_I_hlyD type I s 51.7 4.1E+02 0.0089 30.2 19.0 53 132-184 129-181 (423)
112 PF04871 Uso1_p115_C: Uso1 / p 49.9 3.1E+02 0.0067 28.2 14.7 37 406-442 78-114 (136)
113 KOG0804 Cytoplasmic Zn-finger 47.6 6.2E+02 0.013 31.3 15.9 75 323-400 373-447 (493)
114 KOG0943 Predicted ubiquitin-pr 47.5 22 0.00048 46.9 4.6 17 731-747 1488-1504(3015)
115 TIGR01069 mutS2 MutS2 family p 47.5 4.4E+02 0.0096 34.0 15.8 22 9-30 34-55 (771)
116 PRK00409 recombination and DNA 47.1 4.1E+02 0.0089 34.3 15.4 77 358-443 518-594 (782)
117 COG2433 Uncharacterized conser 46.8 1.9E+02 0.0041 36.5 11.9 65 406-474 430-494 (652)
118 KOG4593 Mitotic checkpoint pro 46.5 7.7E+02 0.017 31.9 50.0 292 99-430 138-440 (716)
119 TIGR01069 mutS2 MutS2 family p 46.4 4.3E+02 0.0093 34.1 15.4 72 369-442 517-588 (771)
120 KOG1103 Predicted coiled-coil 45.8 6.1E+02 0.013 30.5 17.8 27 329-355 111-138 (561)
121 PF03962 Mnd1: Mnd1 family; I 45.2 2.9E+02 0.0063 29.7 11.8 37 380-416 65-101 (188)
122 PRK10246 exonuclease subunit S 44.0 9.3E+02 0.02 32.1 73.0 51 41-91 164-223 (1047)
123 PF05622 HOOK: HOOK protein; 43.4 7.8 0.00017 48.2 0.0 83 316-399 303-385 (713)
124 PF09789 DUF2353: Uncharacteri 42.0 6.5E+02 0.014 29.7 23.0 203 371-591 3-228 (319)
125 PF07106 TBPIP: Tat binding pr 41.9 2.5E+02 0.0055 29.0 10.5 17 422-438 119-135 (169)
126 PF09789 DUF2353: Uncharacteri 41.8 6.5E+02 0.014 29.7 22.2 38 627-664 190-227 (319)
127 PRK00409 recombination and DNA 41.3 6.2E+02 0.013 32.8 15.7 94 202-295 501-594 (782)
128 PTZ00266 NIMA-related protein 40.9 3.6E+02 0.0078 36.1 13.8 13 650-662 527-539 (1021)
129 PF04094 DUF390: Protein of un 40.5 9.7E+02 0.021 31.3 19.2 89 175-266 481-572 (828)
130 TIGR03185 DNA_S_dndD DNA sulfu 39.6 8.6E+02 0.019 30.5 39.5 56 240-300 232-287 (650)
131 KOG0579 Ste20-like serine/thre 39.2 1E+03 0.022 31.2 41.5 291 267-582 808-1165(1187)
132 KOG4403 Cell surface glycoprot 38.9 8.4E+02 0.018 30.2 21.8 18 501-518 246-263 (575)
133 KOG0972 Huntingtin interacting 38.8 6.7E+02 0.014 29.6 13.8 155 266-426 204-372 (384)
134 PF08614 ATG16: Autophagy prot 38.2 3.5E+02 0.0076 28.8 11.1 76 150-225 70-145 (194)
135 PF03904 DUF334: Domain of unk 38.0 6.5E+02 0.014 28.5 16.1 111 426-542 43-154 (230)
136 KOG3915 Transcription regulato 37.7 2.3E+02 0.0049 34.9 10.4 30 419-448 507-536 (641)
137 PF14992 TMCO5: TMCO5 family 37.7 7.1E+02 0.015 28.9 14.6 65 286-351 36-100 (280)
138 PF03962 Mnd1: Mnd1 family; I 37.6 4.7E+02 0.01 28.1 12.0 42 376-418 68-109 (188)
139 PF11932 DUF3450: Protein of u 37.2 6E+02 0.013 27.9 13.9 56 436-491 59-114 (251)
140 PLN03188 kinesin-12 family pro 36.8 8.3E+02 0.018 33.7 15.9 25 45-69 1079-1103(1320)
141 PF10186 Atg14: UV radiation r 36.8 5.9E+02 0.013 27.7 18.4 46 309-354 58-103 (302)
142 PRK15422 septal ring assembly 36.6 2.4E+02 0.0051 27.3 8.4 55 399-453 12-66 (79)
143 KOG3859 Septins (P-loop GTPase 36.0 3.7E+02 0.008 31.7 11.3 53 329-384 349-401 (406)
144 KOG4661 Hsp27-ERE-TATA-binding 36.0 5.1E+02 0.011 32.9 13.0 17 521-537 683-699 (940)
145 KOG4657 Uncharacterized conser 35.8 5.2E+02 0.011 29.4 12.1 69 194-262 49-117 (246)
146 PF05262 Borrelia_P83: Borreli 35.4 9.7E+02 0.021 29.8 17.4 9 244-252 198-206 (489)
147 PF10473 CENP-F_leu_zip: Leuci 35.1 5.5E+02 0.012 26.9 16.4 100 166-265 1-100 (140)
148 PF09731 Mitofilin: Mitochondr 34.2 9.6E+02 0.021 29.4 23.9 160 224-395 261-423 (582)
149 PF09787 Golgin_A5: Golgin sub 34.1 9.6E+02 0.021 29.4 30.7 19 602-620 410-428 (511)
150 TIGR03007 pepcterm_ChnLen poly 34.1 8.8E+02 0.019 28.9 18.9 35 87-121 157-191 (498)
151 TIGR00634 recN DNA repair prot 34.1 9.8E+02 0.021 29.5 21.8 202 422-648 171-379 (563)
152 KOG4278 Protein tyrosine kinas 34.0 5.1E+02 0.011 33.6 12.8 19 734-752 767-785 (1157)
153 PF15462 Barttin: Bartter synd 33.9 78 0.0017 34.7 5.5 130 814-965 79-212 (224)
154 KOG1853 LIS1-interacting prote 33.2 8.3E+02 0.018 28.4 15.8 80 124-210 50-129 (333)
155 KOG0249 LAR-interacting protei 33.2 1.3E+03 0.027 30.5 17.2 58 298-355 96-155 (916)
156 PF13514 AAA_27: AAA domain 32.6 1.4E+03 0.03 30.7 44.5 23 632-656 1024-1046(1111)
157 TIGR03545 conserved hypothetic 32.0 4E+02 0.0086 33.3 11.7 29 374-402 209-237 (555)
158 PF05149 Flagellar_rod: Parafl 31.9 8.8E+02 0.019 28.3 16.5 94 563-677 38-142 (289)
159 KOG2129 Uncharacterized conser 31.2 1.1E+03 0.024 29.2 28.9 135 442-576 52-218 (552)
160 PRK15422 septal ring assembly 31.2 5E+02 0.011 25.2 10.0 59 417-479 6-64 (79)
161 PRK06800 fliH flagellar assemb 31.1 1.4E+02 0.0029 32.9 6.7 71 572-652 33-103 (228)
162 TIGR02680 conserved hypothetic 31.0 1.6E+03 0.035 31.0 32.5 59 547-605 1085-1145(1353)
163 PF09744 Jnk-SapK_ap_N: JNK_SA 30.1 7E+02 0.015 26.5 13.1 69 318-392 82-157 (158)
164 PF10498 IFT57: Intra-flagella 29.8 7.5E+02 0.016 29.4 12.9 113 291-406 225-339 (359)
165 PF15066 CAGE1: Cancer-associa 29.3 1.2E+03 0.026 29.1 21.9 41 354-394 388-428 (527)
166 KOG1003 Actin filament-coating 28.4 8.7E+02 0.019 27.1 16.1 153 88-261 1-153 (205)
167 PRK10884 SH3 domain-containing 28.3 4.4E+02 0.0095 29.0 10.1 54 175-228 118-171 (206)
168 PF03194 LUC7: LUC7 N_terminus 28.3 2.9E+02 0.0064 31.0 9.0 16 655-670 186-201 (254)
169 KOG0995 Centromere-associated 27.6 1.4E+03 0.03 29.2 45.1 88 360-458 291-378 (581)
170 smart00502 BBC B-Box C-termina 27.5 5.1E+02 0.011 24.2 12.5 45 518-562 42-86 (127)
171 cd07651 F-BAR_PombeCdc15_like 26.8 8.5E+02 0.018 26.5 18.6 117 357-502 97-217 (236)
172 PF15254 CCDC14: Coiled-coil d 26.8 1.4E+03 0.031 30.1 15.1 97 447-550 441-537 (861)
173 cd07647 F-BAR_PSTPIP The F-BAR 26.5 8.8E+02 0.019 26.6 18.8 48 494-542 168-215 (239)
174 KOG0579 Ste20-like serine/thre 25.2 1.7E+03 0.037 29.4 31.9 142 416-568 879-1022(1187)
175 PRK10884 SH3 domain-containing 25.0 9.1E+02 0.02 26.6 11.7 15 379-393 148-162 (206)
176 KOG1666 V-SNARE [Intracellular 24.8 1E+03 0.023 26.8 13.3 143 84-234 21-187 (220)
177 KOG1962 B-cell receptor-associ 24.7 7.7E+02 0.017 27.7 11.1 19 486-504 193-211 (216)
178 PF13851 GAS: Growth-arrest sp 24.6 9.3E+02 0.02 26.2 20.3 84 63-153 6-89 (201)
179 PF05622 HOOK: HOOK protein; 24.5 25 0.00054 43.9 0.0 17 501-517 329-345 (713)
180 TIGR03017 EpsF chain length de 24.4 1.2E+03 0.026 27.3 20.0 46 78-123 158-203 (444)
181 PF09726 Macoilin: Transmembra 24.0 1.7E+03 0.036 28.9 27.9 89 205-297 423-517 (697)
182 KOG0980 Actin-binding protein 23.9 1.9E+03 0.041 29.5 31.5 233 354-599 331-569 (980)
183 PF07462 MSP1_C: Merozoite sur 23.9 79 0.0017 39.1 3.9 55 580-645 61-118 (574)
184 PF04156 IncA: IncA protein; 23.5 8.5E+02 0.018 25.3 15.9 18 417-434 100-117 (191)
185 COG3074 Uncharacterized protei 22.5 6.9E+02 0.015 24.0 9.8 65 417-503 6-70 (79)
186 PF04871 Uso1_p115_C: Uso1 / p 22.3 8.7E+02 0.019 25.0 13.9 51 357-409 59-109 (136)
187 PF05529 Bap31: B-cell recepto 21.8 5.5E+02 0.012 27.1 9.1 36 421-456 156-191 (192)
188 PF06818 Fez1: Fez1; InterPro 21.7 1.1E+03 0.025 26.2 16.8 30 423-455 135-164 (202)
189 KOG0995 Centromere-associated 21.7 1.7E+03 0.038 28.3 41.0 22 374-395 263-284 (581)
190 PF10731 Anophelin: Thrombin i 21.5 76 0.0016 29.2 2.4 33 1064-1100 19-51 (65)
191 PF12777 MT: Microtubule-bindi 21.2 1E+03 0.022 27.5 11.9 87 321-407 15-101 (344)
192 PF15070 GOLGA2L5: Putative go 21.0 1.8E+03 0.039 28.2 33.2 251 265-549 12-288 (617)
193 PF09744 Jnk-SapK_ap_N: JNK_SA 20.7 1E+03 0.023 25.3 12.1 61 487-555 51-114 (158)
194 TIGR03545 conserved hypothetic 20.5 6.9E+02 0.015 31.3 10.9 94 349-453 164-257 (555)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.39 E-value=1.3e-06 Score=106.38 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001278 417 LLRLQSQLKQQIETYRHQQELL 438 (1109)
Q Consensus 417 ~lrLqseLKeEId~~R~Qke~L 438 (1109)
|-.+..+|+++|...|.+...|
T Consensus 618 l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 618 LAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335555555555555554
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.31 E-value=3.3e-05 Score=101.02 Aligned_cols=556 Identities=21% Similarity=0.293 Sum_probs=321.3
Q ss_pred cccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHh
Q 001278 82 SEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQRE 161 (1109)
Q Consensus 82 sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre 161 (1109)
.+..|.+...=+...+++...++.++..++... ..+...+.++|.--..++++.-.........+++|..+++
T Consensus 906 le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~-------~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e 978 (1930)
T KOG0161|consen 906 LEKELKELKERLEEEEEKNAELERKKRKLEQEV-------QELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE 978 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444222 1222333333333334445555555555566666666666
Q ss_pred hHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHH---HHHHH----HHHH
Q 001278 162 DLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDE---INSRL----AELV 234 (1109)
Q Consensus 162 ~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~kedd---i~~rl----~~L~ 234 (1109)
.+..--|.=...++++-+.+.-|...++.++.-.+.+.+.+..|++++..++.......+.+-. +..-| ..+.
T Consensus 979 ~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~ 1058 (1930)
T KOG0161|consen 979 NISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIE 1058 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 6665544444468899999999999999999999999999999999998888887777665522 22222 2233
Q ss_pred HHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHH--HHHHHHHHH-----------------HHHHHHHhhhHHHHHHHHHh
Q 001278 235 VKEREADCLRSTVEMKEKRLLTIEEKLNARER--VEIQKLLDD-----------------QRAILDAKQQEFELELEEKR 295 (1109)
Q Consensus 235 ~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~--~eIQKLlde-----------------h~a~L~~Kk~eFElElE~kR 295 (1109)
.-......+...|.++|-+|..++.++..-.. ...||.+.+ .++.++..++++..+++...
T Consensus 1059 ~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~ 1138 (1930)
T KOG0161|consen 1059 ELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELK 1138 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344556667777788888888777754331 222232222 33455666777777777777
Q ss_pred hhHHHHHHHHHHHH---hhhhhhhhhhHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 001278 296 KSIEEEMRSKISAL---DQQEFEISHREEKLERREQALDKKSDRVK----EKENDLAARLKSVKEREKFVKAEEKKLELE 368 (1109)
Q Consensus 296 Ks~eeel~~K~~~~---e~rEvel~h~Eekl~krEqaLe~k~~~lk----eKEkdl~~k~k~LKEkEksL~aeEK~le~e 368 (1109)
.-+++-......-. .++|.++..+-..+.+-....+.++..+. ..=.+|.+-+..++.....|..+...|+.+
T Consensus 1139 ~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e 1218 (1930)
T KOG0161|consen 1139 EELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQRE 1218 (1930)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666644333333 35566666555555554444444444433 233445566666666666666666677777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001278 369 KQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 448 (1109)
Q Consensus 369 k~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~e 448 (1109)
-..|..+-..+...+.++++..-.++ .++.+.+.++.-...-++++..-.++|..|+..+=.|.++....+..|-..
T Consensus 1219 ~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~ 1295 (1930)
T KOG0161|consen 1219 IADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRD 1295 (1930)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHH
Confidence 77777777777777777777776666 445555666666667777788888888888888888888888888888888
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 001278 449 REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLS 528 (1109)
Q Consensus 449 KekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ 528 (1109)
+..|+.+-+.+ +.+|.. .+..+-++..-+ -++..+.+.++.+|.-+.+....-.-. ..+-.-+=+.|-
T Consensus 1296 ~~~~~~qle~~---k~qle~----e~r~k~~l~~~l----~~l~~e~~~l~e~leee~e~~~~l~r~-lsk~~~e~~~~~ 1363 (1930)
T KOG0161|consen 1296 KQALESQLEEL---KRQLEE----ETREKSALENAL----RQLEHELDLLREQLEEEQEAKNELERK-LSKANAELAQWK 1363 (1930)
T ss_pred HHHHHHHHHHH---HHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 88888887766 333333 344444444333 345555777777777766665421110 111222334455
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHH-
Q 001278 529 EKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE----------------------------------LQERTRTFEE- 573 (1109)
Q Consensus 529 ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~----------------------------------L~EREk~FEe- 573 (1109)
.|++....+-+-+++.-|+.|...++.-++.+|-. |..+-+.|+.
T Consensus 1364 ~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~ 1443 (1930)
T KOG0161|consen 1364 KKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKL 1443 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544444443321 2223333332
Q ss_pred --HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHHHHHHHH
Q 001278 574 --KRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKER 651 (1109)
Q Consensus 574 --ek~~EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~~~eRe~ 651 (1109)
+-.+-...+....+.+.++..+..-+..++...-.+.....+.+.++-..|...|.+|..+-.-+-+....+...+..
T Consensus 1444 l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1444 LAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233444555555666666666666666555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhh
Q 001278 652 FLEFVEKH 659 (1109)
Q Consensus 652 fl~~vEk~ 659 (1109)
+...++.+
T Consensus 1524 le~e~~el 1531 (1930)
T KOG0161|consen 1524 LEQEKEEL 1531 (1930)
T ss_pred HHHHHHHH
Confidence 54444433
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.22 E-value=4.5e-05 Score=93.27 Aligned_cols=93 Identities=12% Similarity=0.188 Sum_probs=64.5
Q ss_pred HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccch
Q 001278 43 AEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSS 122 (1109)
Q Consensus 43 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s 122 (1109)
...|.+=+.+.+|+. . +-.+...+.+++..+..++-...+.+.+....+... ...++...|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l~-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQLG-K-LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEEK--EEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCCH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999983 3 355677788888888888888888888887777662 245556677777777777666666
Q ss_pred HHHhHHHHhhhhHHHHH
Q 001278 123 ELEMKLQELESRESVIK 139 (1109)
Q Consensus 123 ~~eRkL~evEaRE~~Lr 139 (1109)
.+...+..+...-..|.
T Consensus 224 ~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 224 RYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555554444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=0.0006 Score=87.81 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHH
Q 001278 62 ADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRES 136 (1109)
Q Consensus 62 adLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~ 136 (1109)
..|.+.|+....+....+-..+..+..+..-+..+..+....+..+..+...+....+....+.++|..++.-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~ 471 (1311)
T TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence 345666666666666666666666666666666666666666666666666666655555555555554444433
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=0.00083 Score=86.59 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH-HHHHHHHHHhHHHHhHHHHHHH
Q 001278 420 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADE-KKKLEKLQHSAEERLKKEECAM 498 (1109)
Q Consensus 420 LqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eE-re~lek~~~~E~erLK~Ek~~~ 498 (1109)
-...|+.+|+.+..+...+-.+..+++.+..-...+|+.+-..+..+......-..+ ...+. -+...-+.|..--..+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 960 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVN-DIKEKVKNIHGYMKDI 960 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555544444443333222211 12222 2223444555555555
Q ss_pred HHHHHHH
Q 001278 499 RDYVQRE 505 (1109)
Q Consensus 499 r~~~kre 505 (1109)
++|+...
T Consensus 961 ~~y~~~~ 967 (1311)
T TIGR00606 961 ENKIQDG 967 (1311)
T ss_pred HHHHHcC
Confidence 6665543
No 6
>PRK01156 chromosome segregation protein; Provisional
Probab=98.86 E-value=0.001 Score=82.04 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHhHHHHHHhhhhhH--HHHHHHHHHHHHHhhhhhhhh
Q 001278 34 SAHLIAFSEAEKREDNLRRALSMEK--QCVADLEKALRDMGEERAQTK 79 (1109)
Q Consensus 34 aAhl~AlsEaeKREEnLkKALgvEK--qCVadLEKAL~emr~E~AeiK 79 (1109)
..+++..+. ..|.+-|.+.+|++. .|...|-.++..+++++..+.
T Consensus 140 ~~~l~~~~~-~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~le 186 (895)
T PRK01156 140 MDSLISGDP-AQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNID 186 (895)
T ss_pred hHHHHhCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443344 456668999999996 666667777777777765553
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.86 E-value=0.0011 Score=81.96 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=27.0
Q ss_pred hhHhhHHHHHhhhhhcHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhhc
Q 001278 612 VNREKLQEQQLGMRKDIDELDILCRRLYGDR-EQFKREKERFLEFVEKHT 660 (1109)
Q Consensus 612 ~~ke~le~q~~em~kdIdeL~~ls~KLk~qR-E~~~~eRe~fl~~vEk~K 660 (1109)
.....+..|..++...++.|...-.++.+.= .+|..-++.|....++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~ 1042 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVN 1042 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666665443 233333455555555444
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=98.84 E-value=0.0011 Score=80.97 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=27.8
Q ss_pred hhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhh
Q 001278 144 SLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREV 189 (1109)
Q Consensus 144 Sf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe 189 (1109)
.+..+....+..+..-...+.+|+..|.+.+..+...+.++++.+.
T Consensus 242 ~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~ 287 (880)
T PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE 287 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555556777777777777777776666655443
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=98.80 E-value=0.0015 Score=79.95 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHH
Q 001278 598 SERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD 632 (1109)
Q Consensus 598 ~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~ 632 (1109)
.+...+.....++......+..+...+.++|+.+.
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~ 700 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444443
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.77 E-value=0.0019 Score=79.73 Aligned_cols=40 Identities=25% Similarity=0.188 Sum_probs=14.7
Q ss_pred HhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHH
Q 001278 125 EMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLR 164 (1109)
Q Consensus 125 eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~ 164 (1109)
...+.++...-..++........+....+..+...+..+.
T Consensus 266 ~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~ 305 (1179)
T TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333333333333333333333333333333333333333
No 11
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.70 E-value=0.0044 Score=79.58 Aligned_cols=207 Identities=15% Similarity=0.267 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 001278 413 EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 492 (1109)
Q Consensus 413 Er~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK 492 (1109)
++.+|......|.++|..+..+...+.+....+..+.....+.-+.+...-+..+-+++.+......+-.-......++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46688888999999999999999999999999999988888888888888888888888777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 493 KEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFE 572 (1109)
Q Consensus 493 ~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~L~EREk~FE 572 (1109)
..+..-+..+...+..|..+-..|- .++..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887777766553 455566666766666666666666777777777777777777766655555
Q ss_pred HHH-------HHHHhh--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhh
Q 001278 573 EKR-------ERVLND--IAH-LKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLG 623 (1109)
Q Consensus 573 eek-------~~EL~~--In~-lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~e 623 (1109)
.++ ..+|.. |+- .-..++.+++.+.-++.+++.-|..|..=+.=++..|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 533 344432 111 445567788888888888888888887766555555543
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.61 E-value=0.01 Score=78.79 Aligned_cols=578 Identities=20% Similarity=0.258 Sum_probs=290.2
Q ss_pred hhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhH
Q 001278 32 EQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAE 111 (1109)
Q Consensus 32 EqaAhl~AlsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAe 111 (1109)
+-+-+.--+.+...|=.-|.--|.-|+.|.+-+||++.+|..++..++---+-. .-..-+.+.+..
T Consensus 1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~--------------~~~t~~q~e~~~ 1156 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ--------------GGTTAAQLELNK 1156 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHH
Confidence 334444455666666777777888899999999999999998887665322111 112222333333
Q ss_pred HHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhh
Q 001278 112 AKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKA 191 (1109)
Q Consensus 112 aklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~ 191 (1109)
.+.+|+.+-++.++..-..-++--..|| -.+.........++.---..=...+|.-+..+.-+.+...-+.++...-
T Consensus 1157 k~e~e~~~l~~~leee~~~~e~~~~~lr---~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k 1233 (1930)
T KOG0161|consen 1157 KREAEVQKLRRDLEEETLDHEAQIEELR---KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEK 1233 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444433333333222222222222 2222222222222211111111222333333444455555566666665
Q ss_pred hhhHHHHHHhhhhHHHHHhhhhhhhhhhHh---hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHH--
Q 001278 192 NENERILKQKERDLEELEKKIDLSSSKLKE---REDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARER-- 266 (1109)
Q Consensus 192 nE~~~~~k~kekeLEe~~kkie~~~~~Lk~---keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~-- 266 (1109)
...++..+..+..|-+++-+++.....+.. +...+..-+.. +.+.|+..|..+..+.....+-++
T Consensus 1234 ~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~----------l~~~lee~e~~~~~~~r~~~~~~~ql 1303 (1930)
T KOG0161|consen 1234 KDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEE----------LSRQLEEAEAKLSALSRDKQALESQL 1303 (1930)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH----------HhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666554443321 22222222222 223333333322222222222111
Q ss_pred HHHHHHHH---HHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 001278 267 VEIQKLLD---DQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEND 343 (1109)
Q Consensus 267 ~eIQKLld---eh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkd 343 (1109)
.+.+..++ -.+..|....+.++.++...|+.++++++.|-.-.-+-=......=.-..+=+-.+....+.+.+--+-
T Consensus 1304 e~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~ 1383 (1930)
T KOG0161|consen 1304 EELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKK 1383 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 124567788889999999999999999988753222111111111122223333444446777888888
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 001278 344 LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQ 423 (1109)
Q Consensus 344 l~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqse 423 (1109)
+..++..+.+....+.+..-.|+.-+..|+.+-+.+..--..+-..-+.++.+..+.. ++..+.+.-+..|+.+
T Consensus 1384 l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~------k~l~e~k~~~e~l~~E 1457 (1930)
T KOG0161|consen 1384 LQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE------KLLAEWKKKLEKLQAE 1457 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 8889999999999999999889999999988776665444334444566666666655 3345556666666666
Q ss_pred HHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHH
Q 001278 424 LKQQIETYRHQQELLL----------KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHS---AEER 490 (1109)
Q Consensus 424 LKeEId~~R~Qke~Ll----------kEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~---E~er 490 (1109)
|...+...|+....++ ...+.|+.+..+|..+-+.| .....-+.+-.+. ...+
T Consensus 1458 ld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl--------------~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1458 LDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL--------------EEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 6666666665544443 33333333333443333333 3333222222211 1112
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001278 491 LKKEECAMRDYVQREIEAIRLDKEA---FEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQER 567 (1109)
Q Consensus 491 LK~Ek~~~r~~~krelE~L~~ekEs---F~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~L~ER 567 (1109)
|-.++..|+..+..--.+|..+.-. +.-.|..-|+. +.+..+.--.+||..|+++--.+..-+.+++..-+.|
T Consensus 1524 le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e----~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k 1599 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE----IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSK 1599 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2222222322222211111111110 11112222222 2233334445678888888888887778888887777
Q ss_pred HHHHHHHH--HHH-------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHH-------HHHhhhhhcHHHH
Q 001278 568 TRTFEEKR--ERV-------LNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQ-------EQQLGMRKDIDEL 631 (1109)
Q Consensus 568 Ek~FEeek--~~E-------L~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le-------~q~~em~kdIdeL 631 (1109)
--.+--+| +-. |++-|....-+.+.|-..+.-+.-|+.+..++..-++.+. +....++..+++|
T Consensus 1600 ~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL 1679 (1930)
T KOG0161|consen 1600 SEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEEL 1679 (1930)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777655 222 3333444444444444444444445555555544444444 3333444444555
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhc
Q 001278 632 DILCRRLYGDREQFKREKERFLEFVEKHT 660 (1109)
Q Consensus 632 ~~ls~KLk~qRE~~~~eRe~fl~~vEk~K 660 (1109)
..--.-+-.-|.+.-.++..+...|-.+.
T Consensus 1680 ~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1680 REKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 54444555555566666666665555543
No 13
>PRK01156 chromosome segregation protein; Provisional
Probab=98.56 E-value=0.0072 Score=74.87 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=23.0
Q ss_pred hHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc
Q 001278 613 NREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTS 661 (1109)
Q Consensus 613 ~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~~~eRe~fl~~vEk~K~ 661 (1109)
....+..+...++.+|..|...-..|+++-+.+..+...+-.+++.++.
T Consensus 682 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~ 730 (895)
T PRK01156 682 NLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555455544444444444444444444443
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.47 E-value=0.016 Score=74.31 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=38.7
Q ss_pred eeccchhhhHHHHHHHHHHHHH---HHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhc
Q 001278 6 IEKKEWTSKIEELRQSFEETQE---ILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLF 81 (1109)
Q Consensus 6 iEkKEwtSK~eel~qa~~eae~---~lKREqaAhl~AlsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~ 81 (1109)
.+-..+..+++++...+...+. .+......+.-.+...+.+-+.++..+..-.+++..+...+.++-.+.+.++-.
T Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 310 (1163)
T COG1196 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555442 223333334444455555555555555555566666565666666555555533
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.37 E-value=0.022 Score=71.11 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHH
Q 001278 589 AEGEIQEIKSERDQLE-------KEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ-----FKREKERFLEFV 656 (1109)
Q Consensus 589 a~~E~E~v~~E~~rLe-------kEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~-----~~~eRe~fl~~v 656 (1109)
+..++..+..++..+. .+-.++......+..++..+.+.++.|...-.+|.+.|.. |..=...|-.++
T Consensus 956 l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~ 1035 (1164)
T TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIF 1035 (1164)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555544443 4455555666677777777777777777777777765432 333355555555
Q ss_pred Hhhc
Q 001278 657 EKHT 660 (1109)
Q Consensus 657 Ek~K 660 (1109)
..|-
T Consensus 1036 ~~l~ 1039 (1164)
T TIGR02169 1036 AELS 1039 (1164)
T ss_pred HHHh
Confidence 5444
No 16
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.16 E-value=0.059 Score=67.62 Aligned_cols=57 Identities=30% Similarity=0.306 Sum_probs=25.8
Q ss_pred HHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhh
Q 001278 113 KLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKL 170 (1109)
Q Consensus 113 klAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkL 170 (1109)
.+++..+....+..+++.++.....+......+.. +.+....+...++.|..|...+
T Consensus 275 ~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 331 (908)
T COG0419 275 ELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERL 331 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555544444333333 3333333444444444444333
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.15 E-value=0.095 Score=69.55 Aligned_cols=416 Identities=22% Similarity=0.283 Sum_probs=241.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHh
Q 001278 12 TSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANT 91 (1109)
Q Consensus 12 tSK~eel~qa~~eae~~lKREqaAhl~AlsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~a 91 (1109)
.|+..++++.+-..+.+|.+....|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+.+++++..
T Consensus 925 ~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~ 1004 (1822)
T KOG4674|consen 925 LSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSR 1004 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 36677888899999999999999998888888888888876654444456677788888888888888888888988888
Q ss_pred HhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHh---HhhHHHHHH
Q 001278 92 LLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQ---REDLREWEK 168 (1109)
Q Consensus 92 Lv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~q---re~L~eweK 168 (1109)
-+.++..-...+.... -.+++..+.+-.. |.-++.+...-..-||.++..- .+.|.....
T Consensus 1005 e~~sl~ne~~~~~~~~-------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~e 1067 (1822)
T KOG4674|consen 1005 EISSLQNELKSLLKAA-------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLRE 1067 (1822)
T ss_pred HhHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765444433322 2333333333333 3333444444444444433321 233444444
Q ss_pred hhchhhhhhHHHHHhhhhhhhhhhhhHHHHHH----hhhhHHHHHhhhhhhhhhhHhhHHHH---HHHHH--HHHHHHHH
Q 001278 169 KLQIGDERLSELRRTLNQREVKANENERILKQ----KERDLEELEKKIDLSSSKLKEREDEI---NSRLA--ELVVKERE 239 (1109)
Q Consensus 169 kLqe~eerL~~~qr~lNqREe~~nE~~~~~k~----kekeLEe~~kkie~~~~~Lk~keddi---~~rl~--~L~~kEke 239 (1109)
-+......+.++....-++..-.-+..+-... .++++..+.+.|..-....+...+.| ....+ +++.-..-
T Consensus 1068 e~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g 1147 (1822)
T KOG4674|consen 1068 EFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG 1147 (1822)
T ss_pred HHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc
Confidence 44444445555554444444333332222222 23444445555444433333333322 22222 22222222
Q ss_pred HHHHhhhHHh--hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhH---------HHHHHHHHHH
Q 001278 240 ADCLRSTVEM--KEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSI---------EEEMRSKISA 308 (1109)
Q Consensus 240 ~~~~~~~Le~--KEkeLl~leEKL~aRE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~---------eeel~~K~~~ 308 (1109)
...+...+-- +|+++..-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-.++..
T Consensus 1148 ~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~ 1223 (1822)
T KOG4674|consen 1148 LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEE 1223 (1822)
T ss_pred hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHH
Confidence 2222222221 6667666666666666544322 22555666666666777777766 4555666666
Q ss_pred Hh-hhhh------hhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH----------
Q 001278 309 LD-QQEF------EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQK---------- 371 (1109)
Q Consensus 309 ~e-~rEv------el~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~---------- 371 (1109)
|. .+|- +..+-..++ +.|..+..+|.-.=.-|..-++.|+..=....|+=+.|+.+...
T Consensus 1224 vNll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~ 1299 (1822)
T KOG4674|consen 1224 VNLLRESNKVLREENEANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLE 1299 (1822)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 2232 233333333 44555555554444444444444444444444444444443322
Q ss_pred --HHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001278 372 --LIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR 449 (1109)
Q Consensus 372 --L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eK 449 (1109)
=..|+.++.+|+.+|..+...+++....|.+-. .++.++|-++|+..|.+-..+..+.++...|+.-+
T Consensus 1300 k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~----------~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~ 1369 (1822)
T KOG4674|consen 1300 KYKDSDKNDYEKLKSEISRLKEELEEKENLIAELK----------KELNRLQEKIKKQLDELNNEKANLTKELEQLEDLK 1369 (1822)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223578888888888888888886666665433 34667778889999999999999999999999999
Q ss_pred HHHHHHHhhhHHh
Q 001278 450 EKFEKEWEVLDEK 462 (1109)
Q Consensus 450 ekFE~EWE~LDEK 462 (1109)
-+.+.-|.-+-.+
T Consensus 1370 ~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1370 TRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877666
No 18
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.99 E-value=0.12 Score=64.96 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=17.7
Q ss_pred HhHHHHHHhhhhhH--HHHHHHHHHHHHHhhhh
Q 001278 45 KREDNLRRALSMEK--QCVADLEKALRDMGEER 75 (1109)
Q Consensus 45 KREEnLkKALgvEK--qCVadLEKAL~emr~E~ 75 (1109)
-|.+=|.+.+|+++ ++...|=...+.++...
T Consensus 155 er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~ 187 (908)
T COG0419 155 ERKEILDELFGLEKYEKLSELLKEVIKEAKAKI 187 (908)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 36677888888887 44444333344444333
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.88 E-value=0.13 Score=61.88 Aligned_cols=43 Identities=28% Similarity=0.446 Sum_probs=38.6
Q ss_pred HHHHhhhhhcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhc
Q 001278 618 QEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 660 (1109)
Q Consensus 618 e~q~~em~kdIdeL~~ls~KLk~qRE~~~~eRe~fl~~vEk~K 660 (1109)
.=|.+|-++.|.+|+.-=+-+++-.|+|..++-.++.+|++|.
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999889999999999999999999999887
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.82 E-value=0.27 Score=63.64 Aligned_cols=148 Identities=26% Similarity=0.346 Sum_probs=89.2
Q ss_pred HHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhc
Q 001278 40 FSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNR 119 (1109)
Q Consensus 40 lsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~R 119 (1109)
+.+.+++=+.|++---.- +|-.+|...++.++.-+.-.+ +-.++.-+..+.+....+++-+.+....+.++..
T Consensus 195 ~~el~~~l~~L~~q~~~a-~~y~~l~~e~~~~~~~~~~~~------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (1163)
T COG1196 195 LEELEKQLEKLERQAEKA-ERYQELKAELRELELALLLAK------LKELRKELEELEEELSRLEEELEELQEELEEAEK 267 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554443322 234456666666666665444 2333344445555555555555556666666666
Q ss_pred cchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhh
Q 001278 120 KSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANEN 194 (1109)
Q Consensus 120 k~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~ 194 (1109)
.-..+..+++++.+.-..++.+-+-+......++.++...++.+..-...+.+.+.++...+.-+-.+...+...
T Consensus 268 ~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1163)
T COG1196 268 EIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777766666666677777777777777777776666666666666665555555555444
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.80 E-value=0.23 Score=62.07 Aligned_cols=471 Identities=20% Similarity=0.288 Sum_probs=261.6
Q ss_pred HHHHhhhhhhhhhccccchhhHHhHhhhhhc-chhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhh
Q 001278 68 LRDMGEERAQTKLFSEKTLTDANTLLGGIEG-KSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLV 146 (1109)
Q Consensus 68 L~emr~E~AeiK~~sesKlaeA~aLv~~~ee-KslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~ 146 (1109)
|+.++.|+.-.+--.|.+.+++++.+.+|.+ =|-+++.----++---|++++-.+++...-- +--.+-
T Consensus 5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~-----------e~q~~~ 73 (775)
T PF10174_consen 5 LERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQE-----------ENQKAQ 73 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHh-----------hHHHHH
Confidence 5677888888888899999999999999977 2333322211222222333333333322111 111344
Q ss_pred hHHHhHHHHHHHhHhhHHHHHHhhchhh----------hhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhh
Q 001278 147 TEREAHEAAFYKQREDLREWEKKLQIGD----------ERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSS 216 (1109)
Q Consensus 147 ~Erea~E~~~~~qre~L~eweKkLqe~e----------erL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~ 216 (1109)
.+..++...+..| .+++-..-.+.... -......|+--.|+..+.+.+.+ ...|++++-.|+.-.
T Consensus 74 ~ei~~LqeELr~q-~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~l----r~~lE~~q~~~e~~q 148 (775)
T PF10174_consen 74 EEIQALQEELRAQ-RELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERL----RKTLEELQLRIETQQ 148 (775)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 5555555555222 22222111111111 11123334444555555544433 345666666666555
Q ss_pred hhhHhhHHHHHHHH--------------------HHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhh-----HH---HHH
Q 001278 217 SKLKEREDEINSRL--------------------AELVVKEREADCLRSTVEMKEKRLLTIEEKLNA-----RE---RVE 268 (1109)
Q Consensus 217 ~~Lk~keddi~~rl--------------------~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a-----RE---~~e 268 (1109)
.+|-...+.|..=+ ..+.-.|-.+..++..|+.+|++...+-+.|-- +. ...
T Consensus 149 ~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~a 228 (775)
T PF10174_consen 149 QTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEA 228 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHH
Confidence 55544444433322 334444556667778888888888666443322 11 235
Q ss_pred HHHHHHHHHHH---HHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001278 269 IQKLLDDQRAI---LDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLA 345 (1109)
Q Consensus 269 IQKLldeh~a~---L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~ 345 (1109)
+|++|+.-.+. |+.-.+..|.|+...+..++---.. ++-..++++.........|.. ++.-.=.|..+.-.|.
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~--r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~ 304 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEAD--RDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELE 304 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--hHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 67887654322 2222333455555554433211111 111222333333333333321 3333444566666677
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 001278 346 ARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLK 425 (1109)
Q Consensus 346 ~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLK 425 (1109)
+...-|.-...........|+.-+..|-+--.....|..|++-++..++..-.++......+..+++|.+-+..==.+|+
T Consensus 305 ~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~ 384 (775)
T PF10174_consen 305 ALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLR 384 (775)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76677777777777777778888888888888899999999999999999999999999999999998776654445566
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHH------------HHHHHHHHHHHHHHHHHHhHHHHhHH
Q 001278 426 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEIN------------KEQEKIADEKKKLEKLQHSAEERLKK 493 (1109)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~------------kE~~~I~eEre~lek~~~~E~erLK~ 493 (1109)
..+|.+=.....|.+.+|.|...-..=+ -.|++-++.|. -.++.-.-+++.+..-+...+++.-.
T Consensus 385 d~~d~~e~ki~~Lq~kie~Lee~l~ekd---~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~ 461 (775)
T PF10174_consen 385 DMLDKKERKINVLQKKIENLEEQLREKD---RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEK 461 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655553332111 12222223333 33333334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHH
Q 001278 494 EECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMN---QEAELLNRRDKMEK 562 (1109)
Q Consensus 494 Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~Emqkre---Le~~~~~r~Ee~E~ 562 (1109)
++..=-+.|++++..++..-++|-..+ ||+..-+.-++.+-+.|.-+.+-+..+ |++.+++.++++++
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eL-sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~k 532 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKEL-SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEK 532 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHH
Confidence 444444677777777777777777665 577777777777777666665555544 44566666666554
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.64 E-value=0.3 Score=58.92 Aligned_cols=97 Identities=25% Similarity=0.271 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Q 001278 421 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRD 500 (1109)
Q Consensus 421 qseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~ 500 (1109)
.+++-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++.+|..|.-.|..++=.
T Consensus 352 ~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lr 427 (546)
T PF07888_consen 352 RSQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLR 427 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHH
Confidence 3555566666665555555677888888888776 68999988777777777666443 6788888888888666555
Q ss_pred HHHHHHHHhhhcHHHHHHHHH
Q 001278 501 YVQREIEAIRLDKEAFEATMR 521 (1109)
Q Consensus 501 ~~krelE~L~~ekEsF~~~M~ 521 (1109)
-.+.+-|.|..++-..|.-|.
T Consensus 428 v~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 428 VAQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444443
No 23
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.38 Score=59.55 Aligned_cols=217 Identities=24% Similarity=0.364 Sum_probs=125.8
Q ss_pred HHhhhHHH---HHHHHHhhhHHHHHHHHHHHHhhhhhh---hhhhH--HHHHHHHHHHHHhhhHHHHHHHHHH-HHHhhH
Q 001278 281 DAKQQEFE---LELEEKRKSIEEEMRSKISALDQQEFE---ISHRE--EKLERREQALDKKSDRVKEKENDLA-ARLKSV 351 (1109)
Q Consensus 281 ~~Kk~eFE---lElE~kRKs~eeel~~K~~~~e~rEve---l~h~E--ekl~krEqaLe~k~~~lkeKEkdl~-~k~k~L 351 (1109)
|.|+-.|+ +|||..|+-+++.-+..+..++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565 688888888888777777666666543 22232 3344556667777777666664332 223333
Q ss_pred HHHHHhHHHHHHH--HHHH-------HHHHHhhHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHH
Q 001278 352 KEREKFVKAEEKK--LELE-------KQKLIADKESLQILK---VEIDQIESENAQQELQIQEECQKLKINEEEKSELLR 419 (1109)
Q Consensus 352 KEkEksL~aeEK~--le~e-------k~~L~~dkeel~~lK---~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lr 419 (1109)
..+|-.-+-.||. |+-+ .+|...+.+.|-.++ ..++--+..|..++.++..-.....+-
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~--------- 466 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD--------- 466 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec---------
Confidence 3333332222221 1111 122222333333332 233333444444444444333322211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH-------------Hh
Q 001278 420 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ-------------HS 486 (1109)
Q Consensus 420 LqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~-------------~~ 486 (1109)
-..-|++|+.++-|.+..+.|.+.|+++.. +++.-+.+++-||..|..-+ ++
T Consensus 467 -~tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 467 -ITTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred -cchHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 124589999999999999999999988754 34444555555555554322 56
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 001278 487 AEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 521 (1109)
Q Consensus 487 E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 521 (1109)
+-+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77788888888888888888888888888777666
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.41 E-value=3.5e-05 Score=95.39 Aligned_cols=511 Identities=23% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhH-------HhhhhhhH
Q 001278 39 AFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEV-------EEKFHAAE 111 (1109)
Q Consensus 39 AlsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEv-------E~Kl~aAe 111 (1109)
.|-+..-|=+.|.--|.-|++--+--||+-++|..|+.+++---+-......+.+.-.-++-.|+ |.--.+-+
T Consensus 40 ~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e 119 (859)
T PF01576_consen 40 KIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHE 119 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666667777777766666777777777777776554544444333333322222222 22223445
Q ss_pred HHHHHhhccchHHHhHHH----HhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhh
Q 001278 112 AKLAEVNRKSSELEMKLQ----ELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQR 187 (1109)
Q Consensus 112 aklAEa~Rk~s~~eRkL~----evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqR 187 (1109)
+.++++-++|+.+--.|. .+.-=-..|-+.+-.|..|.+....++..-=..-..-+|.....+.-|.+++.-+..-
T Consensus 120 ~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~ 199 (859)
T PF01576_consen 120 ATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEES 199 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 666677677655432222 1221222333344444444444444333333333344555555566666666555555
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHH
Q 001278 188 EVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERV 267 (1109)
Q Consensus 188 Ee~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~ 267 (1109)
+..+++-.....+.+.++.++...++.....+ ..|+ + ....-+..|..+...|..
T Consensus 200 er~~~el~~~k~kL~~E~~eL~~qLee~e~~~-----------~~l~-r---------~k~~L~~qLeelk~~lee---- 254 (859)
T PF01576_consen 200 ERQRNELTEQKAKLQSENSELTRQLEEAESQL-----------SQLQ-R---------EKSSLESQLEELKRQLEE---- 254 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-H---------HHHHHHHHHHhhHHHHHh----
Confidence 55555555555555555555555544433332 1111 0 001112223333322221
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHH---HhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001278 268 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISA---LDQQEFEISHREEKLERREQALDKKSDRVKEKENDL 344 (1109)
Q Consensus 268 eIQKLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~---~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl 344 (1109)
++. .+..|..+.+..+.+++..|..++++-.+|... +..-..+|..|-.++ +.....+.+.|.+--+.|
T Consensus 255 Etr-----~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~---e~e~~~~~EelEeaKKkL 326 (859)
T PF01576_consen 255 ETR-----AKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKY---EEEAEQRTEELEEAKKKL 326 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hhh-----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH---HHHhhhhHHHHHHHHHHH
Confidence 111 235677788888889999999998888777542 233344444443333 334444455666666777
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 001278 345 AARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIES---ENAQQELQIQEECQKLKINEEEKSELLRLQ 421 (1109)
Q Consensus 345 ~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a---~~e~q~~qi~ee~e~LkiteeEr~E~lrLq 421 (1109)
..++..+.+.-..+++.--.|+.-+..|..+-+.+.. +|++..+ .++....+++.....++ .. .
T Consensus 327 ~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k------~~----~ 393 (859)
T PF01576_consen 327 ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWK------AK----V 393 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHH------HH----H
Confidence 7788888877777788788888888888887766654 5555444 55666666664433322 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 001278 422 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 501 (1109)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 501 (1109)
..+..+.|.+-.....+..++-.|+.+.......|+.|.-....|+.|+..+..+.-...+-+| +-++.+...
T Consensus 394 ~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~L------ 466 (859)
T PF01576_consen 394 EELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRL------ 466 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHH------
Confidence 3455667777777777888888888888777777888777777788777777665443333221 111111111
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001278 502 VQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLND 581 (1109)
Q Consensus 502 ~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~L~EREk~FEeek~~EL~~ 581 (1109)
..+++.|..+=+.-.+ -+...|..+.-|+..|+.-+-++++.|.+|+..|+..|..=...
T Consensus 467 -E~e~~El~~~leE~E~-------------------~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~ 526 (859)
T PF01576_consen 467 -EQEKEELQEQLEEAED-------------------ALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQ 526 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHH
Confidence 1111111111111111 12244555667888888999999999999999999987654444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHH
Q 001278 582 IAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDI 633 (1109)
Q Consensus 582 In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ 633 (1109)
|-.|..-+..| -+.|.++.-.|++|+.+..+|.--++..+-
T Consensus 527 l~~le~~LE~E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~ 567 (859)
T PF01576_consen 527 LESLEAELEEE-----------RKERAEALREKKKLESDLNELEIQLDHANR 567 (859)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44443333222 233445555566666655555544444433
No 25
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.00 E-value=2.3 Score=55.68 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HhhhH-HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q 001278 425 KQQIETYRHQQELLLKEHEDLQQDREKFEKE----WEVLD-EKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR 499 (1109)
Q Consensus 425 KeEId~~R~Qke~LlkEae~Lk~eKekFE~E----WE~LD-EKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r 499 (1109)
++....+..+...|..+...+++++..|..+ |-.+. +..+..+.-...+..+-+.+..-+.......+.++..+.
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le 756 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELE 756 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555554443 22222 444455555566666777777777777788888888888
Q ss_pred HHHHHHHHHhhhc
Q 001278 500 DYVQREIEAIRLD 512 (1109)
Q Consensus 500 ~~~krelE~L~~e 512 (1109)
..|..+|.+-=..
T Consensus 757 ~~~~~eL~~~GvD 769 (1201)
T PF12128_consen 757 QQYNQELAGKGVD 769 (1201)
T ss_pred HHHHHHHHhCCCC
Confidence 8888877554444
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.99 E-value=1.9 Score=55.48 Aligned_cols=117 Identities=20% Similarity=0.279 Sum_probs=76.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Q 001278 366 ELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI-ETYRHQQELLLKEHED 444 (1109)
Q Consensus 366 e~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEI-d~~R~Qke~LlkEae~ 444 (1109)
..-+..-..-.++|..++.++...+-...+-+.+|++.+.++...+.+...+-+.=..++.+. ..+-.+..++..+.+.
T Consensus 326 ~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~ 405 (1074)
T KOG0250|consen 326 GELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQ 405 (1074)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 333333444556666666666666666666667777777777777776666666666665555 5555666666666777
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 001278 445 LQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK 482 (1109)
Q Consensus 445 Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek 482 (1109)
|+++.++|+-.-..|-++..++..++..+-+++..++.
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77777777777777777777777777766666665543
No 27
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.86 E-value=0.00026 Score=87.87 Aligned_cols=524 Identities=23% Similarity=0.306 Sum_probs=0.0
Q ss_pred ccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHH--
Q 001278 81 FSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYK-- 158 (1109)
Q Consensus 81 ~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~-- 158 (1109)
..+.-+.+..+-++++.+-...+|.+....++.+++++.+..+++|-+.++.+.-..|.-+.-.+....+..+..+..
T Consensus 156 ~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~ 235 (859)
T PF01576_consen 156 QLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQ 235 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666666677777777777777777766666666666665555555555555554444433333221
Q ss_pred -------------------hHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhh
Q 001278 159 -------------------QREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKL 219 (1109)
Q Consensus 159 -------------------qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~L 219 (1109)
.=..-.--...|+..+.-+..++-.+..=.+-..+-.+-|.....+|..|+++++......
T Consensus 236 r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~ 315 (859)
T PF01576_consen 236 REKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQR 315 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 1111111223344444444433333333333444555566667778888888877776663
Q ss_pred HhhH----HHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhhHHHHHHH
Q 001278 220 KERE----DEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQR---AILDAKQQEFELELE 292 (1109)
Q Consensus 220 k~ke----ddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQKLldeh~---a~L~~Kk~eFElElE 292 (1109)
.+.- -.+..+|..+.-.=.++......|++ --.-|+.-| ..++--|+.++ +.|+.|.+-|+..|.
T Consensus 316 ~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK---~k~rL~~El-----eDl~~eLe~~~~~~~~LeKKqr~fDk~l~ 387 (859)
T PF01576_consen 316 TEELEEAKKKLERKLQELQEQLEEANAKVSSLEK---TKKRLQGEL-----EDLTSELEKAQAAAAELEKKQRKFDKQLA 387 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2222 22444444444333333333333332 111111111 11112223332 467888888888888
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHhhHHHHHHhHHHHHHHH
Q 001278 293 EKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKE-------NDLAARLKSVKEREKFVKAEEKKL 365 (1109)
Q Consensus 293 ~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKE-------kdl~~k~k~LKEkEksL~aeEK~l 365 (1109)
.-+.-++... ..++.-..+....+..+.+-.++|+.....+...+ .+|..-...+.+-.+++. .|
T Consensus 388 e~k~~~~~~~----~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~----eL 459 (859)
T PF01576_consen 388 EWKAKVEELQ----AERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH----EL 459 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH----HH
Confidence 7766655332 23333444455555555555555554444443333 233332233333333322 23
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh------------ccHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 366 ELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK------------INEEEKSELLRLQSQLKQQIETYRH 433 (1109)
Q Consensus 366 e~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk------------iteeEr~E~lrLqseLKeEId~~R~ 433 (1109)
+..+..|..++.++...=.+++-.+-..+...+.+.-+.+.++ -+++-|--|.+-=-.|..++|.=|.
T Consensus 460 ek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k 539 (859)
T PF01576_consen 460 EKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERK 539 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHH
Confidence 3334444444443333333333332222222222222221111 1111122222111222223333333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH----------HH
Q 001278 434 QQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY----------VQ 503 (1109)
Q Consensus 434 Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~----------~k 503 (1109)
.+..++..--+|..+..-.+.-|+...-=..++.|.++.+..+=.-+...+. ......++++.+ .+
T Consensus 540 ~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~le----e~~~~~~~~~~~~~~~e~r~~~l~ 615 (859)
T PF01576_consen 540 ERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELE----EAQRAREELREQLAVSERRLRALQ 615 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343333444444444444554444444455544444433333332221 111112222222 22
Q ss_pred HHHHHhhhcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001278 504 REIEAIRLDKEAFEA---TMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLN 580 (1109)
Q Consensus 504 relE~L~~ekEsF~~---~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~L~EREk~FEeek~~EL~ 580 (1109)
.+++.+....+..+- .++.|...+.+.+..=.++- ..+.-+++-||..|.-=+.++|-...+-..+.+.-+
T Consensus 616 ~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~-~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~k----- 689 (859)
T PF01576_consen 616 AELEELREALEQAERARKQAESELDELQERLNELTSQN-SSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAK----- 689 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 334444433333322 23344444444443222111 123345666666665555544433333222222111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHH
Q 001278 581 DIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRR 637 (1109)
Q Consensus 581 ~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~K 637 (1109)
.+...+..|..|+..-..-.+.+...|..|+.+.-+|+.=|+++-....+
T Consensus 690 -------ka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~ 739 (859)
T PF01576_consen 690 -------KAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALK 739 (859)
T ss_dssp ---------------------------------------------------------
T ss_pred -------HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 22334455556666666666777788889999999999888888765543
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.53 E-value=4.4 Score=52.38 Aligned_cols=138 Identities=21% Similarity=0.245 Sum_probs=97.6
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHH
Q 001278 347 RLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKL-KINEEEKSELLRLQSQLK 425 (1109)
Q Consensus 347 k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~L-kiteeEr~E~lrLqseLK 425 (1109)
.....+....-+....+.+-.-+.....-++++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|+
T Consensus 328 ~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~ 407 (1074)
T KOG0250|consen 328 LKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLK 407 (1074)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3333333344444444444444444455555555556666666666666666777666666 667777777777777899
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001278 426 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ 484 (1109)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~ 484 (1109)
+||+++..|...|-.|.++++..-..=+.|-+.+..+...|.+-...+..+=..|.+.+
T Consensus 408 ~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 408 KEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998888888888888888888888888887666555544
No 29
>PRK12704 phosphodiesterase; Provisional
Probab=96.50 E-value=0.13 Score=61.48 Aligned_cols=78 Identities=24% Similarity=0.431 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 001278 284 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 363 (1109)
Q Consensus 284 k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK 363 (1109)
+.+++.|+...|..++.++..+ +.+|..+|..|.+|+..|+.+.+.|..+++.|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554433 444555566667777777777777777777776666666666665555554
Q ss_pred HHHHH
Q 001278 364 KLELE 368 (1109)
Q Consensus 364 ~le~e 368 (1109)
+++.-
T Consensus 132 ~~~~~ 136 (520)
T PRK12704 132 ELEEL 136 (520)
T ss_pred HHHHH
Confidence 44433
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.49 E-value=1.8 Score=47.53 Aligned_cols=185 Identities=19% Similarity=0.250 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhhhccH-HHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHH
Q 001278 375 DKESLQILKVEI----DQIESENAQQELQIQEECQKLKINE-EEKS-ELLRLQS---QLKQQIETYRHQQELLLKEHEDL 445 (1109)
Q Consensus 375 dkeel~~lK~el----EK~~a~~e~q~~qi~ee~e~Lkite-eEr~-E~lrLqs---eLKeEId~~R~Qke~LlkEae~L 445 (1109)
+|++|..|..-+ ++.+ +++.+-..+......+.... ...+ -...++. .|...|+.+-.++--|.-+.+.|
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 455555555433 3333 23444444444444444442 2111 2222333 34477777777777777778888
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH---HHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHH-HHHHHHH
Q 001278 446 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK---LQHSAEERLKKEECAMRDYVQREIEAIRLDKE-AFEATMR 521 (1109)
Q Consensus 446 k~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek---~~~~E~erLK~Ek~~~r~~~krelE~L~~ekE-sF~~~M~ 521 (1109)
+.+...|...|+..-..+..++.+...+...-..... .+.+.-..|+.+..-++..|..++..|...-. .+-..|.
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~ 160 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVD 160 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeec
Confidence 8888888888888777777777766665544433332 24466788888999999999999998887653 2222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001278 522 H-EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKM 560 (1109)
Q Consensus 522 h-E~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~ 560 (1109)
. -...+..-+..=|+++=..+...+.+++...+.+..++
T Consensus 161 ~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l 200 (312)
T PF00038_consen 161 QFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEEL 200 (312)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccc
Confidence 1 12233333444444444444444444444444443333
No 31
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=4.6 Score=52.13 Aligned_cols=107 Identities=29% Similarity=0.460 Sum_probs=75.1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH---HHHHHHHhH
Q 001278 414 KSELLRLQ---SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK---KLEKLQHSA 487 (1109)
Q Consensus 414 r~E~lrLq---seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre---~lek~~~~E 487 (1109)
|-+|+... +.++..|........-..+.+..++.+-++|+++|..++-++....+|.+.+...|- ++..-...|
T Consensus 288 rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~e 367 (1141)
T KOG0018|consen 288 RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEE 367 (1141)
T ss_pred hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHH
Confidence 55555332 223344444555555666778889999999999999999999999999999887654 556666778
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 001278 488 EERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHE 523 (1109)
Q Consensus 488 ~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE 523 (1109)
.+|||.+-+..- ..+|+.|.+...+=-++..|+
T Consensus 368 y~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~ 400 (1141)
T KOG0018|consen 368 YERLKEEACKEA---LEELEVLNRNMRSDQDTLDHE 400 (1141)
T ss_pred HHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhH
Confidence 888887765544 667777776655544444443
No 32
>PRK11637 AmiB activator; Provisional
Probab=96.48 E-value=1.3 Score=51.45 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 001278 225 EINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQR 277 (1109)
Q Consensus 225 di~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQKLldeh~ 277 (1109)
.|...-..|...+.++..+...+...+.+|..++.+|..+...-=+.+-.-+.
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444555555555555666666666665555444333444444
No 33
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.45 E-value=0.58 Score=50.48 Aligned_cols=96 Identities=32% Similarity=0.447 Sum_probs=62.6
Q ss_pred HHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHH---HHHHHHHHHHHHHHHHH
Q 001278 167 EKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEI---NSRLAELVVKEREADCL 243 (1109)
Q Consensus 167 eKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi---~~rl~~L~~kEke~~~~ 243 (1109)
.-++...+.+|-+....+..-+.+.-+..+-|...+.+|+.+...++..-..++..+..| ...|.+|-..+..+..+
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 445556666677777777777777777777787888888888888888888887777664 44455555555544443
Q ss_pred hhhHHhhHHhHHHHHHHHhhHH
Q 001278 244 RSTVEMKEKRLLTIEEKLNARE 265 (1109)
Q Consensus 244 ~~~Le~KEkeLl~leEKL~aRE 265 (1109)
. +.-|..+..|..+|..=|
T Consensus 171 e---~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 171 E---DEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp H---HHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHH
Confidence 3 444555555666655433
No 34
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.10 E-value=0.29 Score=58.55 Aligned_cols=76 Identities=29% Similarity=0.480 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 001278 284 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 363 (1109)
Q Consensus 284 k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK 363 (1109)
+.+++-|+..+|..++.+++.+ +.+|..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.|....+
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566665555555444 444555555666666666666666666666666666666666665554444
Q ss_pred HHH
Q 001278 364 KLE 366 (1109)
Q Consensus 364 ~le 366 (1109)
++.
T Consensus 126 e~~ 128 (514)
T TIGR03319 126 ELE 128 (514)
T ss_pred HHH
Confidence 333
No 35
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.04 E-value=9.7 Score=51.38 Aligned_cols=147 Identities=20% Similarity=0.324 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhccc-c-----chhhH---------------HhHhhhhhcchhhHHhhhhhhHHHHHHhhc
Q 001278 61 VADLEKALRDMGEERAQTKLFSE-K-----TLTDA---------------NTLLGGIEGKSLEVEEKFHAAEAKLAEVNR 119 (1109)
Q Consensus 61 VadLEKAL~emr~E~AeiK~~se-s-----KlaeA---------------~aLv~~~eeKslEvE~Kl~aAeaklAEa~R 119 (1109)
|.+|+.+|++.|--.-.||++.. . =+.++ ..|++.| +-.-.|+..|..++..+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~eA~kkLe~tE~ 307 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELYTSRRQLAAEQY 307 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 55677777777766666776541 1 12222 2233333 2223555666666666666
Q ss_pred cchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHH
Q 001278 120 KSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILK 199 (1109)
Q Consensus 120 k~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k 199 (1109)
+...++..+.+++.+...|++++-....-....+ ++...-..+..+...|.+...++......+..-.+.+.+....+.
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEle 386 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777777777666655543332222 222223344444444444445555555444444444444444444
Q ss_pred HhhhhHHHHHhhh
Q 001278 200 QKERDLEELEKKI 212 (1109)
Q Consensus 200 ~kekeLEe~~kki 212 (1109)
..+.++..++..+
T Consensus 387 elEeeLeeLqeqL 399 (1486)
T PRK04863 387 AAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 36
>PRK00106 hypothetical protein; Provisional
Probab=95.94 E-value=0.71 Score=55.81 Aligned_cols=76 Identities=26% Similarity=0.457 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 001278 284 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 363 (1109)
Q Consensus 284 k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK 363 (1109)
+.+++-|+...|..++.++...... |..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.|....+
T Consensus 74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~ 146 (535)
T PRK00106 74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE 146 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444433 444444455555555555555555555555555555555444444443
Q ss_pred HHH
Q 001278 364 KLE 366 (1109)
Q Consensus 364 ~le 366 (1109)
+++
T Consensus 147 ~~~ 149 (535)
T PRK00106 147 QVE 149 (535)
T ss_pred HHH
Confidence 333
No 37
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=8.7 Score=49.48 Aligned_cols=271 Identities=25% Similarity=0.382 Sum_probs=125.6
Q ss_pred HhhHHhHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhhHHHH--HHHHHhhhHH-----HHHHHHHHHHhhhhhhhh
Q 001278 248 EMKEKRLLTIEEKLNARERVEIQKLLDD---QRAILDAKQQEFEL--ELEEKRKSIE-----EEMRSKISALDQQEFEIS 317 (1109)
Q Consensus 248 e~KEkeLl~leEKL~aRE~~eIQKLlde---h~a~L~~Kk~eFEl--ElE~kRKs~e-----eel~~K~~~~e~rEvel~ 317 (1109)
+.+|.-|.+++|.-..+++ |+.||.. -=-.|+.-|-+++. +|+..|++++ .|+..=+..++.-|.+..
T Consensus 170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4467777888888887765 5555533 22333333444332 5677777765 333333334444443333
Q ss_pred h---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH-------HHH-----------HhhH
Q 001278 318 H---REEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEK-------QKL-----------IADK 376 (1109)
Q Consensus 318 h---~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek-------~~L-----------~~dk 376 (1109)
. .-.++.-+-....-.++.++..=+.|+.++..|.+--..+++.+-++-..| ..| ..+-
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l 327 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLAL 327 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHH
Confidence 2 222232222233334555555666677777777775555555543332222 222 2234
Q ss_pred HHHHHHHHHHHHHHhHHHH----------HHHHHHHHHhhhh----------------ccHHHHHHHHHHHH-HHHHHHH
Q 001278 377 ESLQILKVEIDQIESENAQ----------QELQIQEECQKLK----------------INEEEKSELLRLQS-QLKQQIE 429 (1109)
Q Consensus 377 eel~~lK~elEK~~a~~e~----------q~~qi~ee~e~Lk----------------iteeEr~E~lrLqs-eLKeEId 429 (1109)
..++.++..|+....++.. +..+...-.-.|+ -+++||+.++|-+- +|+.=|.
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~ 407 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIN 407 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555554443332 1111111111111 14577777776542 3555555
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhh----hHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 001278 430 TYRHQQELLLKEHEDLQQDREKFEKEWEV----LDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 505 (1109)
Q Consensus 430 ~~R~Qke~LlkEae~Lk~eKekFE~EWE~----LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 505 (1109)
..--|..-|.+|.++|+.+...--.+... |++-+..+..=...++..+..+..++ ..+.-|=.|+..++.-+-.=
T Consensus 408 ~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~-~~Rk~lWREE~~l~~~i~~~ 486 (1200)
T KOG0964|consen 408 DTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQ-DKRKELWREEKKLRSLIANL 486 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666555443322211111 11222222222223333333333333 33333444444444444444
Q ss_pred HHHhhhcHHHHHHHHH
Q 001278 506 IEAIRLDKEAFEATMR 521 (1109)
Q Consensus 506 lE~L~~ekEsF~~~M~ 521 (1109)
.+.|+....-.++.|-
T Consensus 487 ~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 487 EEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5555555555566554
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.84 E-value=1.9 Score=48.77 Aligned_cols=166 Identities=20% Similarity=0.241 Sum_probs=115.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 001278 330 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 409 (1109)
Q Consensus 330 Le~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 409 (1109)
+=+...++..|..=++=+++-+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +
T Consensus 126 ~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~ 203 (325)
T PF08317_consen 126 LVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--I 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 33444555556666666666666655555555555555555555555555555555555555555555544444333 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001278 410 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 489 (1109)
Q Consensus 410 teeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~e 489 (1109)
..-+..++. .||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=.+|-.
T Consensus 204 ~~~D~~eL~----~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~ 279 (325)
T PF08317_consen 204 ESCDQEELE----ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK 279 (325)
T ss_pred hhcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 233444444 4567777777778888888999999999999999999999999999999999888888889999999
Q ss_pred HhHHHHHHHHHH
Q 001278 490 RLKKEECAMRDY 501 (1109)
Q Consensus 490 rLK~Ek~~~r~~ 501 (1109)
+||..-+.++..
T Consensus 280 ~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 280 RLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.58 E-value=4.3 Score=43.93 Aligned_cols=100 Identities=25% Similarity=0.325 Sum_probs=41.9
Q ss_pred hhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhh
Q 001278 109 AAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQRE 188 (1109)
Q Consensus 109 aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqRE 188 (1109)
.|...+..+..+-..+..++..+++.-..|.|..-.+..+.+..+.. |..-..+|...+.++-+..+.+..=|
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eer-------L~~~~~kL~~~e~~~de~er~~k~lE 84 (237)
T PF00261_consen 12 EAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEER-------LEEATEKLEEAEKRADESERARKVLE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-------CCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444455555555555555555444444433333 33333333333333333333333333
Q ss_pred hhhhhhHHHHHHhhhhHHHHHhhhhhh
Q 001278 189 VKANENERILKQKERDLEELEKKIDLS 215 (1109)
Q Consensus 189 e~~nE~~~~~k~kekeLEe~~kkie~~ 215 (1109)
.+....+--+...+..|.++....+.+
T Consensus 85 ~r~~~~eeri~~lE~~l~ea~~~~ee~ 111 (237)
T PF00261_consen 85 NREQSDEERIEELEQQLKEAKRRAEEA 111 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444443333
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.46 E-value=11 Score=47.84 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=48.2
Q ss_pred HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001278 373 IADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 450 (1109)
Q Consensus 373 ~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKe 450 (1109)
...+-...-||..+..+...+......|..-+-+|..+.+.=+++-.==..||..+-....+...|..++|.|+..-+
T Consensus 276 e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle 353 (775)
T PF10174_consen 276 EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE 353 (775)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333334445666666666666666666666666666666555555433445667777777777778888877776533
No 41
>PRK12704 phosphodiesterase; Provisional
Probab=95.37 E-value=0.9 Score=54.64 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHh
Q 001278 295 RKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIA 374 (1109)
Q Consensus 295 RKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~ 374 (1109)
+..++.++...+.+++ .++..++..|.+||..|+.+.+.|..++..|+.+-..|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~----------- 124 (520)
T PRK12704 59 LLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ----------- 124 (520)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3334455555555544 44555566666666555544444444444444444444433333333333
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 375 DKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE--LLRLQSQLKQQIETYRHQQELLLK 440 (1109)
Q Consensus 375 dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E--~lrLqseLKeEId~~R~Qke~Llk 440 (1109)
++..++.+++++.......+.+|. -.|.+|=-+ +..+..+++.++..+-.+.+.-.+
T Consensus 125 ---eLe~~~~~~~~~~~~~~~~l~~~a------~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
T PRK12704 125 ---ELEKKEEELEELIEEQLQELERIS------GLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAK 183 (520)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333333333333333332 123333222 335677788888775444444433
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=15 Score=48.24 Aligned_cols=264 Identities=18% Similarity=0.263 Sum_probs=151.3
Q ss_pred HHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhh----h
Q 001278 240 ADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEF----E 315 (1109)
Q Consensus 240 ~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEv----e 315 (1109)
+......++.-+.+|...-+|+..-...+.++.=+ |+ ....+-..++.+++ ..++.++..|+.+.| .
T Consensus 336 i~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~-~~----~~~~e~~~~~kn~~----~~~k~~~~~~e~~~vk~~E~ 406 (1293)
T KOG0996|consen 336 IAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEA-VK----KEIKERAKELKNKF----ESLKKKFQDLEREDVKREEK 406 (1293)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHH-HH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33455566666777777777766444444443311 11 11122223333333 233444455554433 3
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH-------HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001278 316 ISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKER-------EKFVKAEEKKLELEKQKLIADKESLQILKVEIDQ 388 (1109)
Q Consensus 316 l~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEk-------EksL~aeEK~le~ek~~L~~dkeel~~lK~elEK 388 (1109)
++|.=.++.|-+..+++-.++..+.++-.+.=....-+- ++.+.-+++.|..++..|... -..+..++.+
T Consensus 407 lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~---t~~~~~e~~~ 483 (1293)
T KOG0996|consen 407 LKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQE---TEGIREEIEK 483 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHH
Confidence 444444555555555555555554444433222221111 122222333333333333322 2345677888
Q ss_pred HHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHH
Q 001278 389 IESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINK 468 (1109)
Q Consensus 389 ~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~k 468 (1109)
+..++..-..++.+....+.+.++|=.-|+-.+..+..-.+.+-.+..-+++..++.+..--....+...+--+..++.|
T Consensus 484 ~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k 563 (1293)
T KOG0996|consen 484 LEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEK 563 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88888888999999999999999999888888888888888888877777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH--HHHHHhhhcHHH
Q 001278 469 EQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ--REIEAIRLDKEA 515 (1109)
Q Consensus 469 E~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k--relE~L~~ekEs 515 (1109)
++.....+=..+...++.=+.++-.-+..|...-. .=|.+|.+.+++
T Consensus 564 ~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 564 ELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 77777666666666655545554444443332222 235666666654
No 43
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.20 E-value=1.1 Score=53.90 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 001278 298 IEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEE 362 (1109)
Q Consensus 298 ~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeE 362 (1109)
+++++..++.+++ .++..++..|.+||+.|+.+.+.|..++..|+.+-+.|..+++.|..-+
T Consensus 56 aeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re 117 (514)
T TIGR03319 56 AKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKE 117 (514)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444443 3444455555555555544444444444444444444444433333333
No 44
>PRK00106 hypothetical protein; Provisional
Probab=95.08 E-value=1.2 Score=54.01 Aligned_cols=87 Identities=17% Similarity=0.338 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhH
Q 001278 297 SIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADK 376 (1109)
Q Consensus 297 s~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dk 376 (1109)
.++.++..++.+++ .++......+.+||+.|+.+.+.|..++..|+.+-. .|+.....|..-+
T Consensus 76 EaeeEi~~~R~ElE---kel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~--------------eLe~kekeLe~re 138 (535)
T PRK00106 76 EAKEEARKYREEIE---QEFKSERQELKQIESRLTERATSLDRKDENLSSKEK--------------TLESKEQSLTDKS 138 (535)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 34455555555544 222222224555555444444433333333333333 3333333333333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 001278 377 ESLQILKVEIDQIESENAQQELQI 400 (1109)
Q Consensus 377 eel~~lK~elEK~~a~~e~q~~qi 400 (1109)
+++...+.+++.+......++.+|
T Consensus 139 eeLee~~~~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 139 KHIDEREEQVEKLEEQKKAELERV 162 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 45
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.80 E-value=0.91 Score=48.08 Aligned_cols=70 Identities=30% Similarity=0.560 Sum_probs=44.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHH
Q 001278 290 ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVK 359 (1109)
Q Consensus 290 ElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~ 359 (1109)
++...|..++.++..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677788888888787777777666666666666666666666555555555555555555544444
No 46
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=17 Score=46.11 Aligned_cols=247 Identities=25% Similarity=0.333 Sum_probs=127.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHh
Q 001278 374 ADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIET----------YRHQQELLLKEHE 443 (1109)
Q Consensus 374 ~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~----------~R~Qke~LlkEae 443 (1109)
+-++.+.+=.++||+-|-.+++|.++-.++.++++--+.+|-+-.|++.+=|.+++- -|...++=-+|.+
T Consensus 317 KrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie 396 (1118)
T KOG1029|consen 317 KRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIE 396 (1118)
T ss_pred hhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999888888888888888777777766655554442 2233333444444
Q ss_pred HHHHHHHHHHH----HHhhhHHhHHHH----HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH----------HHH
Q 001278 444 DLQQDREKFEK----EWEVLDEKRDEI----NKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV----------QRE 505 (1109)
Q Consensus 444 ~Lk~eKekFE~----EWE~LDEKR~el----~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~----------kre 505 (1109)
+...-|+-.|+ |||-. +|.++ .+|++.|.-++.+...++ -|.+-|.-....+...+ +.+
T Consensus 397 ~rEaar~ElEkqRqlewEra--r~qem~~Qk~reqe~iv~~nak~~ql~-~eletLn~k~qqls~kl~Dvr~~~tt~kt~ 473 (1118)
T KOG1029|consen 397 RREAAREELEKQRQLEWERA--RRQEMLNQKNREQEWIVYLNAKKKQLQ-QELETLNFKLQQLSGKLQDVRVDITTQKTE 473 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhheeccchHHHH
Confidence 44444444443 67754 23333 345666665555544333 34444444444333222 345
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001278 506 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHL 585 (1109)
Q Consensus 506 lE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~L~EREk~FEeek~~EL~~In~l 585 (1109)
++.+.-.++--|+.|. .+.-+|| |-..+|.-+-..|..|+..+.+.+-.. .++ .-+..+|+..-.-
T Consensus 474 ie~~~~q~e~~isei~----qlqarik-E~q~kl~~l~~Ekq~l~~qlkq~q~a~----~~~-----~~~~s~L~aa~~~ 539 (1118)
T KOG1029|consen 474 IEEVTKQRELMISEID----QLQARIK-ELQEKLQKLAPEKQELNHQLKQKQSAH----KET-----TQRKSELEAARRK 539 (1118)
T ss_pred HHHhhhHHHHHHHHHH----HHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhhc----cCc-----chHHHHHHHHHHH
Confidence 5555555544444444 3433433 344455555555666666555433211 000 0112222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhh
Q 001278 586 KEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYG 640 (1109)
Q Consensus 586 ke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~ 640 (1109)
|+++..-|. -....|.+|..--..+-+-++.|..+++.|.-.+-...++|.+
T Consensus 540 ke~irq~ik---dqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 540 KELIRQAIK---DQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 2233344444333333344555666666666666555555544
No 47
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.72 E-value=1.6 Score=47.73 Aligned_cols=106 Identities=18% Similarity=0.310 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhh
Q 001278 562 KELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD 641 (1109)
Q Consensus 562 ~~L~EREk~FEeek~~EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~q 641 (1109)
..|+.+...|+.-+..-++.+.++...- +=+++..-|+..|..|| ...-+++-.|+.||..|.+.-+.++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er-------~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQER-------MAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999998888888887654 44555555555555554 455677888999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhcCCCCC
Q 001278 642 REQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPD 681 (1109)
Q Consensus 642 RE~~~~eRe~fl~~vEk~K~ckncg~~~~efvlsdLql~d 681 (1109)
|......=.+++..+-.+| .-++++..+-+.|..
T Consensus 76 r~~~~~~i~r~~eey~~Lk------~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLK------DEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHcCCCC
Confidence 7775554444444444433 455555333255433
No 48
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.64 E-value=20 Score=46.52 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH--HHHhHHH--HhHHHHHHHHHH
Q 001278 426 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK--LQHSAEE--RLKKEECAMRDY 501 (1109)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek--~~~~E~e--rLK~Ek~~~r~~ 501 (1109)
.+-+..|+|-++|+.|---|.-+.+..-.-|++|--=-+.=.-+-+.+.-+.+.|+. .++.+-+ ++=..-...+.
T Consensus 315 ~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqs- 393 (1195)
T KOG4643|consen 315 SERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQS- 393 (1195)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhh-
Confidence 344666777777888877777777777777776643111112233344444444444 2222211 11000011110
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHH--
Q 001278 502 VQREIEAIRLDKEAFEATMRHEQLVLSEKAK--NDRRKMLEEFEMQRMNQEAELLNR---RDKMEKELQERTRTFEEK-- 574 (1109)
Q Consensus 502 ~krelE~L~~ekEsF~~~M~hE~s~~~ek~q--~Er~d~l~d~EmqkreLe~~~~~r---~Ee~E~~L~EREk~FEee-- 574 (1109)
.++|.+-. =+-.|+-||--|+-|+. .|| +.+.--|+-+|+....+= ++.+...-.-+.+.+...
T Consensus 394 --ss~Ee~~S----K~leleke~KnLs~k~e~Leer---i~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~ 464 (1195)
T KOG4643|consen 394 --SSYEELIS----KHLELEKEHKNLSKKHEILEER---INQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSL 464 (1195)
T ss_pred --hhHHHHHH----HHHHHHHHhHhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 12222211 12233333333322221 111 112222333444333333 333333333344444444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh---hhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHHHH
Q 001278 575 RERVLNDIAHLKEVAEGEIQEIKSE----RDQLEKEKHEVK---VNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKR 647 (1109)
Q Consensus 575 k~~EL~~In~lke~a~~E~E~v~~E----~~rLekEr~Ei~---~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~~~ 647 (1109)
..-+++..|++-+-...++++...- ...|..-..++. ..+..+.+|.-.+-...+.+++...-|...=-.+-.
T Consensus 465 e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ 544 (1195)
T KOG4643|consen 465 ENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEE 544 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4456666676666555555444332 222222222222 234445555554444444444444444444445667
Q ss_pred HHHHHHHHHHhhcc
Q 001278 648 EKERFLEFVEKHTS 661 (1109)
Q Consensus 648 eRe~fl~~vEk~K~ 661 (1109)
++..+|.+|..|+.
T Consensus 545 ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 545 ENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHH
Confidence 88889999999886
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.30 E-value=15 Score=43.55 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001278 428 IETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQE 471 (1109)
Q Consensus 428 Id~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~ 471 (1109)
+..++...+.|.....++..+....+.+|..+...++++.++..
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334333444444444444455555555555544443
No 50
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.17 E-value=25 Score=45.73 Aligned_cols=52 Identities=29% Similarity=0.489 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001278 226 INSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAIL 280 (1109)
Q Consensus 226 i~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQKLldeh~a~L 280 (1109)
++.-|++|-.-=..+..++..|+.+=.+|.-++..+..- +-++++++....+
T Consensus 696 le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~---e~~~~~~~~~~~~ 747 (1174)
T KOG0933|consen 696 LERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQN---EFHKLLDDLKELL 747 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hHhhHHHHHHHHH
Confidence 344444454445567777777777777777777766554 4455555555444
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.17 E-value=19 Score=44.25 Aligned_cols=311 Identities=17% Similarity=0.216 Sum_probs=161.8
Q ss_pred HHHHHHHHh----hhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHH
Q 001278 64 LEKALRDMG----EERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIK 139 (1109)
Q Consensus 64 LEKAL~emr----~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~Lr 139 (1109)
|+.-|..+| .+...||+.++.=|+.|..+|+.+......++..+.....-+.++-.+.-.
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~---------------- 131 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEK---------------- 131 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------------
Confidence 455555555 467889999999999999999988877777776665555544444332221
Q ss_pred HHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhh
Q 001278 140 RERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKL 219 (1109)
Q Consensus 140 RerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~L 219 (1109)
.++...--|+++.+|...|-+.+.-++-.++-+..=|+....--+...+...+|..+++.++.+...-
T Consensus 132 ------------~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 132 ------------AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred ------------HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 12222334667777877777777777766666655555544444444445556666666655554322
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHH-HHHHHHH-HHHHHHHHHhhhHHHHHHHHHhhh
Q 001278 220 KEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARER-VEIQKLL-DDQRAILDAKQQEFELELEEKRKS 297 (1109)
Q Consensus 220 k~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~-~eIQKLl-deh~a~L~~Kk~eFElElE~kRKs 297 (1109)
-..+..+..=+..|.- ...+-+.+|.+..-+ ..|+. ...+... ++-..++.-=+-+||.-+..-|+.
T Consensus 200 ~d~~n~~q~Lleel~f----------~~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAF----------LKRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHHhHHHHHHHHHHH----------HHhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2222211111111111 111122333322221 12221 1111110 011122233344666777777777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHH
Q 001278 298 IEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKE 377 (1109)
Q Consensus 298 ~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dke 377 (1109)
++.=.+.|+.++...=.--+ ..-+..-+.|...-.-+.+--.-|-+-|..-.+.++.|+.-+.+|..++.
T Consensus 269 iE~~Y~~kI~~i~~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r 338 (546)
T KOG0977|consen 269 IESWYKRKIQEIRTSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR 338 (546)
T ss_pred HHHHHHHHHHHHHhhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence 77777777776653100000 00111112222222223333333344455566667777777788877777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 378 SLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRH 433 (1109)
Q Consensus 378 el~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~ 433 (1109)
..+..=.+.+...+.+-+++.++. -|...|+-.+.-|--||..||.
T Consensus 339 ~~e~~L~~kd~~i~~mReec~~l~----------~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 339 SFEQALNDKDAEIAKMREECQQLS----------VELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHH----------HHHHHhhchHhHHHhHHHHHHH
Confidence 666555554444444444444433 3556677778888899999985
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.38 E-value=21 Score=42.26 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHH
Q 001278 386 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDE 465 (1109)
Q Consensus 386 lEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~e 465 (1109)
|...+..++.++..+......++....+..++...-.+|...|..+|.....+..+...|+.+.++.+..=..+.++-.+
T Consensus 304 l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~ 383 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Confidence 34456666667777777777776777777777777788888888888888888888888888888888887777777888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001278 466 INKEQEKIADEKKKLEKLQ 484 (1109)
Q Consensus 466 l~kE~~~I~eEre~lek~~ 484 (1109)
+..++..+..++..+.+-.
T Consensus 384 l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 384 LQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888887777775443
No 53
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.20 E-value=14 Score=39.66 Aligned_cols=143 Identities=20% Similarity=0.367 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 001278 414 KSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 493 (1109)
Q Consensus 414 r~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~ 493 (1109)
+..-+-|-.-||++|...|.+....-+...++.++-.+.-.--..+.+..++|++.+......+..|.... .+++
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k----~rl~- 96 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK----ARLK- 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-
Confidence 45667888899999999999999999999999999999999999999999999988887766665554433 1111
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHH
Q 001278 494 EECAMRDYVQREIEAIRLDKEAFE---ATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ-EAELLNRRDKMEKELQERTR 569 (1109)
Q Consensus 494 Ek~~~r~~~krelE~L~~ekEsF~---~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreL-e~~~~~r~Ee~E~~L~EREk 569 (1109)
....++..|..+.+.+. .+++.||.+|..+-.. +++|+. ||..+ .+-++++...+...|.-|+.
T Consensus 97 -------~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 97 -------ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23555666666665553 3445555555555442 233332 22222 23445556666666666665
Q ss_pred HHHH
Q 001278 570 TFEE 573 (1109)
Q Consensus 570 ~FEe 573 (1109)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 54
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.15 E-value=37 Score=44.30 Aligned_cols=299 Identities=21% Similarity=0.317 Sum_probs=161.4
Q ss_pred HHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhh---hh
Q 001278 140 RERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDL---SS 216 (1109)
Q Consensus 140 RerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~---~~ 216 (1109)
++-++.--|-+-+...|..-=+.+.++=+.|.+.-+-|..-|.+=++|--. .+..-.++|.++..+++. ..
T Consensus 173 eeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~l------EYtiYdrEl~E~~~~l~~le~~r 246 (1200)
T KOG0964|consen 173 EESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSL------EYTIYDRELNEINGELERLEEDR 246 (1200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhh------hhhhhhhHHHHHHHHHHHHHHHH
Confidence 344555566677777777777777777777777777777777665555322 255666777777666543 23
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001278 217 SKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIE---EKLNARERVEIQKLLDDQRAILDAKQQEFELELEE 293 (1109)
Q Consensus 217 ~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~le---EKL~aRE~~eIQKLldeh~a~L~~Kk~eFElElE~ 293 (1109)
.+.-++-+++...+ ...+.+...+...+-..|..|..|- +.+.+++..-+++. +.|..+..+|--+++-
T Consensus 247 ~~~~e~s~~~~~~~---~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k-----t~lel~~kdlq~~i~~ 318 (1200)
T KOG0964|consen 247 SSAPEESEQYIDAL---DKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK-----TKLELKIKDLQDQITG 318 (1200)
T ss_pred hccchhhhhHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHhhh
Confidence 33333333333222 2233333333333333333333332 34455555555544 4555555454444432
Q ss_pred Hh---hhHHHHHHHHHHHHhhhhhhhhhhH---HHHHHHHHHHHHhhhHHHHHHHHHHHH------HhhHHHHHHhHHHH
Q 001278 294 KR---KSIEEEMRSKISALDQQEFEISHRE---EKLERREQALDKKSDRVKEKENDLAAR------LKSVKEREKFVKAE 361 (1109)
Q Consensus 294 kR---Ks~eeel~~K~~~~e~rEvel~h~E---ekl~krEqaLe~k~~~lkeKEkdl~~k------~k~LKEkEksL~ae 361 (1109)
-+ ++.-..+..=....+.++.+++..+ ..+...|.-+...+..+..+..||-+| +++-+++++-|+.+
T Consensus 319 n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~e 398 (1200)
T KOG0964|consen 319 NEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSE 398 (1200)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHH
Confidence 21 1111111111111122222222221 112233333344444444444444333 33445666666654
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 362 EKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 441 (1109)
Q Consensus 362 EK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkE 441 (1109)
|+.-+.-+..-++..+.++-|++-+...+++...+|.+-...+.-++..-.++...-..||++.|.+-.....|--|
T Consensus 399 ---i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 399 ---IEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred ---HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777888888888888777777777777766666666666777778778888888888776666666666
Q ss_pred HhHHHHHHHHHHHH
Q 001278 442 HEDLQQDREKFEKE 455 (1109)
Q Consensus 442 ae~Lk~eKekFE~E 455 (1109)
.-.|+...++.+.+
T Consensus 476 E~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 476 EKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555543
No 55
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.00 E-value=51 Score=45.55 Aligned_cols=461 Identities=21% Similarity=0.274 Sum_probs=222.2
Q ss_pred cchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhh-------hHHHhHHHHHHHhHhhHHHHHHhh
Q 001278 98 GKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLV-------TEREAHEAAFYKQREDLREWEKKL 170 (1109)
Q Consensus 98 eKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~-------~Erea~E~~~~~qre~L~eweKkL 170 (1109)
+....+..=++..+.....++---..+..++.-+++.=+.|+.+-..|. .|++++....+.++-+|...+-..
T Consensus 710 er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~ 789 (1822)
T KOG4674|consen 710 ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQK 789 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556667777777777777788888888888888887776554 455556666666655555555555
Q ss_pred chhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHH----HHHHHHHHHHHH---
Q 001278 171 QIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLA----ELVVKEREADCL--- 243 (1109)
Q Consensus 171 qe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~----~L~~kEke~~~~--- 243 (1109)
...++-....+..+++| +...+.+|..+++++......++....+++.-|. .+..-....+.+
T Consensus 790 ~~~e~s~~~~k~~~e~~----------i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~ 859 (1822)
T KOG4674|consen 790 NELEESEMATKDKCESR----------IKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTS 859 (1822)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555433 2345666666777666666666555544333332 222222333333
Q ss_pred ----hhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHH---hhhHHHHHHHHHHHHhhhh
Q 001278 244 ----RSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQ---RAILDAKQQEFELELEEK---RKSIEEEMRSKISALDQQE 313 (1109)
Q Consensus 244 ----~~~Le~KEkeLl~leEKL~aRE~~eIQKLldeh---~a~L~~Kk~eFElElE~k---RKs~eeel~~K~~~~e~rE 313 (1109)
...+.+.|.++..|+.+|. .+.++.+..++ ..-..-+-..|..++++- +..| .-..
T Consensus 860 l~~~~~~~~~le~k~~eL~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L-----------~~a~ 925 (1822)
T KOG4674|consen 860 LDSVSTNIAKLEIKLSELEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEEL-----------TDAL 925 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 3334444444444444443 36677776666 333333344466666544 3222 2223
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH-------------------------HH
Q 001278 314 FEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE-------------------------LE 368 (1109)
Q Consensus 314 vel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le-------------------------~e 368 (1109)
-.|....+.+..-+++|+.---++.+--..+++++..++.+=-+|...--.|. .+
T Consensus 926 s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e 1005 (1822)
T KOG4674|consen 926 SQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSRE 1005 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 33444444444455555544444444444444444444443333321111111 22
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 001278 369 KQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEK----SELLRL---QSQLKQQIETYRHQQELLLKE 441 (1109)
Q Consensus 369 k~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr----~E~lrL---qseLKeEId~~R~Qke~LlkE 441 (1109)
...++.+...+.....+..+....+.+++..+ .+.+....... ..|..+ =.+|+++..+|-.+-..|-+.
T Consensus 1006 ~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~---~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~ 1082 (1822)
T KOG4674|consen 1006 ISSLQNELKSLLKAASQANEQIEDLQNDLKTE---TEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKS 1082 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22233333333333333333332222222222 12222222111 111111 235677777777777777778
Q ss_pred HhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH---HHhHHHHhHHHH-----HHH---HHHHHHHHHHhh
Q 001278 442 HEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL---QHSAEERLKKEE-----CAM---RDYVQREIEAIR 510 (1109)
Q Consensus 442 ae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~---~~~E~erLK~Ek-----~~~---r~~~krelE~L~ 510 (1109)
.+-+...-..|++-|. |++.-|..|.......=+-|+.. +|+=-+.+=.-- .+| ..++.+=+-.|+
T Consensus 1083 ~~~~~~~l~e~~~~w~---E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR 1159 (1822)
T KOG4674|consen 1083 RESRHALLSEQERDWS---EKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLR 1159 (1822)
T ss_pred HHHHHhHHhhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHH
Confidence 8877788888888885 45555555554443333333322 222111111110 001 233555666778
Q ss_pred hcHHHHHHHH---HHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 511 LDKEAFEATM---RHEQLVLSEKAK---NDRRKMLEEFEMQRMNQEA---------ELLNRRDKMEKELQERTRTFEEKR 575 (1109)
Q Consensus 511 ~ekEsF~~~M---~hE~s~~~ek~q---~Er~d~l~d~EmqkreLe~---------~~~~r~Ee~E~~L~EREk~FEeek 575 (1109)
++++-|.++. ..|-..+..++. +...|+.+-+-.-+-.-.. .|.+.-+.| +-|.|=-+.|.++.
T Consensus 1160 ~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~v-Nll~EsN~~LRee~ 1238 (1822)
T KOG4674|consen 1160 KEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEV-NLLRESNKVLREEN 1238 (1822)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 8888776653 344433333322 2333333333322222210 111111111 23445566666677
Q ss_pred HHHHhhhHHHHHHH
Q 001278 576 ERVLNDIAHLKEVA 589 (1109)
Q Consensus 576 ~~EL~~In~lke~a 589 (1109)
++.++.|.-|.+.+
T Consensus 1239 ~~~~~k~qEl~~~i 1252 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKI 1252 (1822)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777665555443
No 56
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.05 E-value=62 Score=44.24 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=25.3
Q ss_pred HHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHH
Q 001278 240 ADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEE 301 (1109)
Q Consensus 240 ~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~eee 301 (1109)
++.++..+..-..-|-++.. ..+-+..+..|+-+--. .=-.+|=.--+..|..||+-
T Consensus 232 i~~m~~~l~~~r~t~~~~~~--tq~drdlFk~lI~~~~~---~~aad~~r~~eERR~liEEA 288 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRV--TQSDRDLFKHLITESTN---YVAADYMRHANERRVHLEEA 288 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHhhhhhh---hhHHHHhhCHHHHHHHHHHH
Confidence 44555555554444444432 33344455555443211 11234533344555555555
No 57
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=91.56 E-value=23 Score=42.85 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhccccchhhhhHHHHhhcCCCCCccccCCCCChHHHhhh
Q 001278 649 KERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERC 697 (1109)
Q Consensus 649 Re~fl~~vEk~K~ckncg~~~~efvlsdLql~d~e~~~~~~~~~~~d~~ 697 (1109)
+.-|...+..|+.|.....++.- +|+-|. +.....-++|...|.++|
T Consensus 429 ~~p~~~el~~l~~~~~~d~~v~~-~l~~l~-~~a~~~Gv~s~~~L~~rf 475 (582)
T PF09731_consen 429 PRPFEDELRALKELAPDDELVDA-ALSSLP-PEAAQRGVPSEAQLRNRF 475 (582)
T ss_pred CCCHHHHHHHHHHhCCCChHHHH-HHHhcC-HHHhhCCCCCHHHHHHHH
Confidence 46788888889988666666554 456655 334343577777888887
No 58
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=90.56 E-value=9 Score=40.75 Aligned_cols=60 Identities=23% Similarity=0.510 Sum_probs=36.2
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 001278 308 ALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLEL 367 (1109)
Q Consensus 308 ~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ 367 (1109)
++..+..++..+|..|.+||..|+.+.+.|..++..|+.+...|..+...|..-++.++.
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~ 131 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666666665555555554444443
No 59
>PRK12705 hypothetical protein; Provisional
Probab=90.55 E-value=18 Score=43.98 Aligned_cols=59 Identities=29% Similarity=0.463 Sum_probs=32.3
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHh
Q 001278 292 EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKF 357 (1109)
Q Consensus 292 E~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEks 357 (1109)
...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 62 ~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 62 LRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555 44466666666666666666655555555544444443
No 60
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.42 E-value=54 Score=40.54 Aligned_cols=109 Identities=19% Similarity=0.285 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 001278 284 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 363 (1109)
Q Consensus 284 k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK 363 (1109)
+-=||+|+-.-|+.+++-- .+....|-.+.+-...++.-..++.++++.+.+==..++.+...|...+-
T Consensus 87 k~~ye~El~~ar~~l~e~~-----------~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA 155 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDETA-----------RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA 155 (546)
T ss_pred hHHhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Confidence 3346666666666555433 23333333444444444444455555555555544455555555555554
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001278 364 KLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEE 403 (1109)
Q Consensus 364 ~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee 403 (1109)
++..-+...-.=-+++.-||.+...+...|..=+.+++.|
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4444444444444555666666666666666666665544
No 61
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.23 E-value=80 Score=42.23 Aligned_cols=67 Identities=19% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHhhh
Q 001278 341 ENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI--LKVEIDQIESENAQQELQIQEECQKL 407 (1109)
Q Consensus 341 Ekdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~--lK~elEK~~a~~e~q~~qi~ee~e~L 407 (1109)
=.++......|.+..+.+....++++..+...+.--.+..+ ++..++.-+..+.++..|..-|...+
T Consensus 625 ~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 625 IAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333333333333 55555555555555555544444333
No 62
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.96 E-value=2.6 Score=52.29 Aligned_cols=120 Identities=28% Similarity=0.415 Sum_probs=0.0
Q ss_pred hHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhH-HHHHHhhchhhhhhHHH
Q 001278 102 EVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDL-REWEKKLQIGDERLSEL 180 (1109)
Q Consensus 102 EvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L-~eweKkLqe~eerL~~~ 180 (1109)
+.|.++......+....++..+++..++.+..++..++.++.....+.......+......| ++-.-.+++..+.....
T Consensus 90 ~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l 169 (722)
T PF05557_consen 90 ELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSL 169 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555555555555544444444444444443322222 11111122112222122
Q ss_pred HHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHh
Q 001278 181 RRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKE 221 (1109)
Q Consensus 181 qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~ 221 (1109)
+.-+.+=.-.+...+..++..+.++++++..++.....+.+
T Consensus 170 ~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e 210 (722)
T PF05557_consen 170 KNELSELERQAENAESQIQSLESELEELKEQLEELQSELQE 210 (722)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222223334444555566666666666655555433
No 63
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.95 E-value=69 Score=39.68 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHh
Q 001278 592 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL 638 (1109)
Q Consensus 592 E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KL 638 (1109)
.+.++..++..++++..++..+...+.++...++++|+.+...-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555443333
No 64
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.50 E-value=81 Score=39.98 Aligned_cols=310 Identities=21% Similarity=0.273 Sum_probs=175.2
Q ss_pred hhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhH-
Q 001278 145 LVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKERE- 223 (1109)
Q Consensus 145 f~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~ke- 223 (1109)
+..|+-.+|++++.----+.+-+-+++...--|-+.|..+||=++..+.-.-.|+....+-+.+...++.++..|....
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~ 310 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESES 310 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888777777777778888788888888889999998888888888888887878777777777775433
Q ss_pred ------HHHHHHHHHHH--HHHHH--HHHHhhhHHhhHHhHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHhhhHHHHH
Q 001278 224 ------DEINSRLAELV--VKERE--ADCLRSTVEMKEKRLLTIEEKLNARE---RVEIQKLLDDQRAILDAKQQEFELE 290 (1109)
Q Consensus 224 ------ddi~~rl~~L~--~kEke--~~~~~~~Le~KEkeLl~leEKL~aRE---~~eIQKLldeh~a~L~~Kk~eFElE 290 (1109)
.++..-...+. ..|++ +...........-.+..|+-+++.=. ..++|.+- .++....-+=+|
T Consensus 311 tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~-----~~ed~lk~l~~e 385 (786)
T PF05483_consen 311 TQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLK-----KNEDQLKILTME 385 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHH
Confidence 33333222221 12221 22222222223344445555555433 35555552 233344445567
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHH
Q 001278 291 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERRE------QALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKK 364 (1109)
Q Consensus 291 lE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krE------qaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~ 364 (1109)
|..+-..+++..+.+.. +|+++...-.-|++.. .-+++-.+.|+..+.+|... |.-+++.+.-.+
T Consensus 386 Lqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev~dLe-- 456 (786)
T PF05483_consen 386 LQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL---LQIREKEVHDLE-- 456 (786)
T ss_pred HHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHH--
Confidence 77666667776665542 3333333333333333 33555555666666666544 333444444444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 365 LELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK-------INEEEKSELLRLQSQLKQQIETYRHQQEL 437 (1109)
Q Consensus 365 le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk-------iteeEr~E~lrLqseLKeEId~~R~Qke~ 437 (1109)
.+|-...+.=+.+-..++.++..++++..+-.+-..+.. .+.-+++....=-.++.+-|...+.|.+-
T Consensus 457 -----~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~ 531 (786)
T PF05483_consen 457 -----IQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEK 531 (786)
T ss_pred -----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443332222211111 11122332222223567788888999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 001278 438 LLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKI 473 (1109)
Q Consensus 438 LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I 473 (1109)
++++++.|......+-.|.+.+-+.-+.-.-|.++-
T Consensus 532 ~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~k 567 (786)
T PF05483_consen 532 MLKQIENLEETNTQLRNELESVKEELKQKGEEVKCK 567 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888777777766555555555553
No 65
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.30 E-value=54 Score=37.71 Aligned_cols=54 Identities=20% Similarity=0.458 Sum_probs=36.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q 001278 328 QALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI 381 (1109)
Q Consensus 328 qaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~ 381 (1109)
..|..++..+.++-.+|-.+.+.+.++=+++++....|-.+-.+|-..+.+++.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777777777777777777776666666666665543
No 66
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.87 E-value=7.9 Score=48.17 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHh
Q 001278 9 KEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKR 46 (1109)
Q Consensus 9 KEwtSK~eel~qa~~eae~~lKREqaAhl~AlsEaeKR 46 (1109)
.+..+++..|++.+...+.-+++.+-.|-.+++...++
T Consensus 64 ~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~ 101 (722)
T PF05557_consen 64 IELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQ 101 (722)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777776666666655544
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.61 E-value=1.3e+02 Score=40.36 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 358 VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQEL 437 (1109)
Q Consensus 358 L~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~ 437 (1109)
+.+..+.|+.....+..+-+...++..-..-.--.+..++.......+.|...++.-..+..+..+|..+.+.+|.|.-.
T Consensus 541 v~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~ 620 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTE 620 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333333333444444455566677777788888888888888888999888888
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH-HHHHHHHhHH
Q 001278 438 LLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK-KLEKLQHSAE 488 (1109)
Q Consensus 438 LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre-~lek~~~~E~ 488 (1109)
+..+.-+|+.+-. .|.+.-..++++...+-+.|. +.+.+-.+|.
T Consensus 621 ~~e~~~~l~~~i~-------sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 621 ISEIIAELKEEIS-------SLEETLKAGKKELLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHhHHH-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777765544 444555555555555544433 3344444444
No 68
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.31 E-value=69 Score=36.84 Aligned_cols=166 Identities=19% Similarity=0.233 Sum_probs=106.9
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 001278 330 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 409 (1109)
Q Consensus 330 Le~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 409 (1109)
|-+...++..|.-=++=|++-|+.-...|...-.-|......|.++-+-+..+...+....+.+..+..++.+....+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 44455566666666666666666555555444444444444444444444444444444444444444443333332221
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001278 410 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 489 (1109)
Q Consensus 410 teeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~e 489 (1109)
- +-.++..|..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 14566655555444 34455556677888899999999999999999999999988888888888888889999
Q ss_pred HhHHHHHHHHHH
Q 001278 490 RLKKEECAMRDY 501 (1109)
Q Consensus 490 rLK~Ek~~~r~~ 501 (1109)
+||..-..++..
T Consensus 275 ~Lk~~~~~Le~l 286 (312)
T smart00787 275 KLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 69
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.56 E-value=87 Score=36.40 Aligned_cols=112 Identities=18% Similarity=0.289 Sum_probs=58.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001278 488 EERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQER 567 (1109)
Q Consensus 488 ~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~L~ER 567 (1109)
-+.|+++|..+--.|.++-|.|.-.=-.=.+.+.+|+..+...+.+|..-++.-+.-+=..|+.++...+.++++-.+++
T Consensus 86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EK 165 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREK 165 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666666655555555444333333444555555555555555555555554444555555555555555444433
Q ss_pred ---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 568 ---TRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKE 606 (1109)
Q Consensus 568 ---Ek~FEeek~~EL~~In~lke~a~~E~E~v~~E~~rLekE 606 (1109)
|.+.|.+-+ +|...+-+-|.++..|...|+..
T Consensus 166 VdlEn~LE~EQE-------~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 166 VDLENTLEQEQE-------ALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333322 23344556666666666666554
No 70
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.82 E-value=76 Score=35.18 Aligned_cols=143 Identities=24% Similarity=0.343 Sum_probs=82.5
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 001278 344 LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQ 423 (1109)
Q Consensus 344 l~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqse 423 (1109)
|-++|-..=++=.+|...-+.|+.+...+..-+ ...+..+...++.+...+. ..|..+..++..+..--..
T Consensus 9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~------~~~~~~~~~~ye~el~~lr---~~id~~~~eka~l~~e~~~ 79 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQENKRLESEIEELREKK------GEEVSRIKEMYEEELRELR---RQIDDLSKEKARLELEIDN 79 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc------cccCcccccchhhHHHHhH---HhhhhHHHHhhHHhhhhhh
Confidence 344444444444455555555555544444331 2223333333333333222 2223333444444444556
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHH
Q 001278 424 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEE 495 (1109)
Q Consensus 424 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek 495 (1109)
|+.+|+.+|.+-+...+....|..+...+-++-+..---|..|+..+..+.++-..+...+..|-.-|+..-
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 777788888888777888888888877777777777777888888888888888877777777777666544
No 71
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.14 E-value=1.5e+02 Score=37.89 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=30.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhhHH
Q 001278 291 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRV-KEKENDLAARLKSVK 352 (1109)
Q Consensus 291 lE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~l-keKEkdl~~k~k~LK 352 (1109)
|.++|+-+|.|++.-++++-.+|-.+..+|..+ | .++.. +|-++|.+.-+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~----~----~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL----Q----ELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHhhhhhhHHHHHHHHH
Confidence 444555555555555577777777777666666 2 22332 445556665555543
No 72
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=81.87 E-value=47 Score=32.23 Aligned_cols=91 Identities=25% Similarity=0.369 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHH
Q 001278 298 IEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKE 377 (1109)
Q Consensus 298 ~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dke 377 (1109)
++..|..|+.+...++..+..++..|.++++.|....-.+..-=++-+. ...-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~----------k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA----------KRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888888888888888888887766666544333333 333333444444444444445
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 001278 378 SLQILKVEIDQIESENAQQEL 398 (1109)
Q Consensus 378 el~~lK~elEK~~a~~e~q~~ 398 (1109)
+|..|..+|..+.+.+..-..
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555544333
No 73
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=81.56 E-value=76 Score=38.79 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 001278 339 EKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK 408 (1109)
Q Consensus 339 eKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 408 (1109)
+++++++.+-.-+..+|..-....+..+..+.++....+.+...+...++-...+..+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666667766666666666666666666655555543
No 74
>PRK09039 hypothetical protein; Validated
Probab=81.20 E-value=52 Score=38.06 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=74.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhH
Q 001278 48 DNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMK 127 (1109)
Q Consensus 48 EnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRk 127 (1109)
-.|=-.|+.+..+-++|+-.|.+|+..+. +++..-+.+....++...-..+++..+....+.|++..-.++++.+.
T Consensus 63 a~L~e~L~le~~~~~~l~~~l~~l~~~l~----~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~ 138 (343)
T PRK09039 63 AELADLLSLERQGNQDLQDSVANLRASLS----AAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQ 138 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33777899999999999999999999887 22333333333333222223466666666667777776667777777
Q ss_pred HHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHH
Q 001278 128 LQELESRESVIKRERLSLVTEREAHEAAFYKQREDLRE 165 (1109)
Q Consensus 128 L~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~e 165 (1109)
..-+-+.=..||+++-+..++..+.|.....++..|.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766666666665444333333
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.99 E-value=65 Score=33.12 Aligned_cols=95 Identities=32% Similarity=0.446 Sum_probs=75.0
Q ss_pred HHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhh
Q 001278 115 AEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANEN 194 (1109)
Q Consensus 115 AEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~ 194 (1109)
-.+.-+..+++-++++++.|-..+..++-||..=..-+|.+|..-...|.+-..+|.++..+..... .||.|
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-~l~rr------- 81 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-QLNRR------- 81 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-HHHhh-------
Confidence 3444556677888899999999999999999999999999999999999999999998888876655 34433
Q ss_pred HHHHHHhhhhHHHHHhhhhhhhhhhH
Q 001278 195 ERILKQKERDLEELEKKIDLSSSKLK 220 (1109)
Q Consensus 195 ~~~~k~kekeLEe~~kkie~~~~~Lk 220 (1109)
+...+.+|+.+.+.+..+...|.
T Consensus 82 ---iq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 82 ---IQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888776666663
No 76
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.93 E-value=2.3e+02 Score=38.65 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=47.9
Q ss_pred HHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhc
Q 001278 40 FSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNR 119 (1109)
Q Consensus 40 lsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~R 119 (1109)
|++.+.|=.-|.-.|..=..=++.|+..+..+..+.+ -|.++.-|..|+..+..+......+..++..|+..++.+-+
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~--~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~ 821 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALADELA--GAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAA 821 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666666677777777777763 36677778888777776655544444444444444444433
Q ss_pred c
Q 001278 120 K 120 (1109)
Q Consensus 120 k 120 (1109)
.
T Consensus 822 ~ 822 (1353)
T TIGR02680 822 A 822 (1353)
T ss_pred H
Confidence 3
No 77
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.96 E-value=1.3e+02 Score=34.52 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 001278 374 ADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI 428 (1109)
Q Consensus 374 ~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEI 428 (1109)
-|.++|..++.+|......++..+..+.+-+..|......-.++.....+|..+|
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777666666666666665555544444333333333333333333
No 78
>PRK09039 hypothetical protein; Validated
Probab=78.10 E-value=1.4e+02 Score=34.63 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=11.8
Q ss_pred hHHhhHHhHHHHHHHHhh
Q 001278 246 TVEMKEKRLLTIEEKLNA 263 (1109)
Q Consensus 246 ~Le~KEkeLl~leEKL~a 263 (1109)
.+..++++|..|+..|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 455666777777777665
No 79
>PRK12705 hypothetical protein; Provisional
Probab=77.99 E-value=1.8e+02 Score=35.83 Aligned_cols=60 Identities=23% Similarity=0.368 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001278 284 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAAR 347 (1109)
Q Consensus 284 k~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k 347 (1109)
+.++|-|+...|..+... ..-+.+||-.+..+.+.|.+++..|+.+...|..+++.|..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655544333 222445555555555555555555555444444444444444
No 80
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.97 E-value=95 Score=34.47 Aligned_cols=107 Identities=23% Similarity=0.310 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 001278 378 SLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWE 457 (1109)
Q Consensus 378 el~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 457 (1109)
.|..+..+..+....+......|..--+++++.++++..|-..+.++.+++..++.+..-..+|-..|.++
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e--------- 83 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE--------- 83 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 46677788888888899999999998999999999999888888888888777777666655555555444
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q 001278 458 VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV 502 (1109)
Q Consensus 458 ~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~ 502 (1109)
..+++-++..+.++++.-+ .|-.+|+.+-..++...
T Consensus 84 -----~~e~~~~i~~l~ee~~~ke----~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 84 -----LREAEAEIARLEEESERKE----EEAEELQEELEEAREDE 119 (246)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4444444444444443322 34445555544444433
No 81
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=76.29 E-value=2.5e+02 Score=36.61 Aligned_cols=105 Identities=21% Similarity=0.293 Sum_probs=64.0
Q ss_pred HHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhH---HHHHHHHHHHHhhhhhhhhhhHHHH
Q 001278 247 VEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSI---EEEMRSKISALDQQEFEISHREEKL 323 (1109)
Q Consensus 247 Le~KEkeLl~leEKL~aRE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~---eeel~~K~~~~e~rEvel~h~Eekl 323 (1109)
|-..+..|.+||-++.-+|. +.|+| ++-.+.+..-+.+-|.|||+-+--+ +.+|-+|+.++--.=.+|+..=..|
T Consensus 101 lk~~~sQiriLQn~c~~lE~-ekq~l-Q~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~l 178 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEM-EKQKL-QDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEEL 178 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence 34456667777777777763 44554 3444556666777788888776443 3445556666555555555555555
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Q 001278 324 ERREQALDKKSDRVKEKENDLAARLKSVKE 353 (1109)
Q Consensus 324 ~krEqaLe~k~~~lkeKEkdl~~k~k~LKE 353 (1109)
..-+-.+..++....+..+.+..|++.+++
T Consensus 179 t~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 179 NEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666665553
No 82
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.21 E-value=2.8e+02 Score=37.02 Aligned_cols=50 Identities=30% Similarity=0.450 Sum_probs=31.3
Q ss_pred hccchHHHhHHHHhhhhHHHHHHH-------HhhhhhHHHhHHHHHHHhHhhHHHHH
Q 001278 118 NRKSSELEMKLQELESRESVIKRE-------RLSLVTEREAHEAAFYKQREDLREWE 167 (1109)
Q Consensus 118 ~Rk~s~~eRkL~evEaRE~~LrRe-------rlSf~~Erea~E~~~~~qre~L~ewe 167 (1109)
+++++.+.--|-++++--..||-+ .+-+..|.+-++++|.+-|+...+|-
T Consensus 169 ~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 169 VKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555543 23456777778888888887777775
No 83
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=75.80 E-value=3.1e+02 Score=37.41 Aligned_cols=84 Identities=19% Similarity=0.285 Sum_probs=59.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhH
Q 001278 538 MLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKL 617 (1109)
Q Consensus 538 ~l~d~EmqkreLe~~~~~r~Ee~E~~L~EREk~FEeek~~EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~l 617 (1109)
-+++--.++++|+..+..+ +|..+.+..+.+.......|+... ...++-++..|..+++-++..+..+
T Consensus 993 ~l~~~~~~er~l~dnl~~~------~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~~~~l~se~~~~ 1060 (1294)
T KOG0962|consen 993 KIRNQYQRERNLKDNLTLR------NLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEEREKLSSEKNLL 1060 (1294)
T ss_pred HHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 3556666677777766654 344444455555555555555443 5567888999999999999999999
Q ss_pred HHHHhhhhhcHHHHHH
Q 001278 618 QEQQLGMRKDIDELDI 633 (1109)
Q Consensus 618 e~q~~em~kdIdeL~~ 633 (1109)
-++..++..-|.-+..
T Consensus 1061 lg~~ke~e~~i~~~k~ 1076 (1294)
T KOG0962|consen 1061 LGEMKQYESQIKKLKQ 1076 (1294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988877654
No 84
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.30 E-value=1.5e+02 Score=33.41 Aligned_cols=91 Identities=25% Similarity=0.328 Sum_probs=57.2
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHH
Q 001278 438 LLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFE 517 (1109)
Q Consensus 438 LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~ 517 (1109)
|.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++...
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~ 169 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 334444444445555555555666666666666666666666666666666666666655544 4556777888888
Q ss_pred HHHHHHHHHHHHHHH
Q 001278 518 ATMRHEQLVLSEKAK 532 (1109)
Q Consensus 518 ~~M~hE~s~~~ek~q 532 (1109)
.+|.-+=...++++-
T Consensus 170 ~~l~~ell~~yeri~ 184 (239)
T COG1579 170 EKLDPELLSEYERIR 184 (239)
T ss_pred HhcCHHHHHHHHHHH
Confidence 888876666666553
No 85
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=74.74 E-value=2.4e+02 Score=35.49 Aligned_cols=207 Identities=22% Similarity=0.284 Sum_probs=110.7
Q ss_pred HHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHH---hhHH--HHHHHHHH
Q 001278 199 KQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKL---NARE--RVEIQKLL 273 (1109)
Q Consensus 199 k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL---~aRE--~~eIQKLl 273 (1109)
..-+++|+++++.|+.....+...++++..--..+..=+.+....+..+...|+++...+--+ ..-+ -..+|.++
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345667777777777666666666555544444444444444444444444443333221110 0000 01112221
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Q 001278 274 DDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKE 353 (1109)
Q Consensus 274 deh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKE 353 (1109)
+ .-..|..++..+.+..|.-+.++++.=+.. ..-++-..-.+...++........-...++.
T Consensus 404 ~----~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~--------------~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~ 465 (594)
T PF05667_consen 404 E----ASEQRLVELAQQWEKHRAPLIEEYRRLKEK--------------ASNRESESKQKLQEIKELREEIKEIEEEIRQ 465 (594)
T ss_pred H----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122345555556666665555554432222 2222222333344444444444444445555
Q ss_pred HHHhHHHHHHHHHHH---------HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 001278 354 REKFVKAEEKKLELE---------KQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQ 423 (1109)
Q Consensus 354 kEksL~aeEK~le~e---------k~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqse 423 (1109)
|+..++...+.++.- ...++.=...|.+-|.||.||+..+-.-..+|..-..+|.-|-.-..|++-=-++
T Consensus 466 Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAK 544 (594)
T PF05667_consen 466 KEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAK 544 (594)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 555444444433322 2345555667888899999999999999999999999999998888888865555
No 86
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=74.13 E-value=1.7e+02 Score=33.63 Aligned_cols=66 Identities=30% Similarity=0.500 Sum_probs=52.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHhhHHHHHhhhhhcHHHHHHHHHHhhhhH
Q 001278 577 RVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVK--------------VNREKLQEQQLGMRKDIDELDILCRRLYGDR 642 (1109)
Q Consensus 577 ~EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~--------------~~ke~le~q~~em~kdIdeL~~ls~KLk~qR 642 (1109)
.-|++=|.+=.....||+.|.--+.+|++|..... ..+..+..+..-+.+-|+.|..|++-|+.+|
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45778888889999999999999999999987543 3666677777777777777777777777765
No 87
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.97 E-value=1.6e+02 Score=33.16 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001278 268 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDL 344 (1109)
Q Consensus 268 eIQKLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl 344 (1109)
.|| -||-...-|..+..++--.|...+ .++.....+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 11 ~iq-~lD~e~~rl~~~~~~~~~~l~k~~----~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 11 AIQ-KLDLEKDRLEPRIKEIRKALKKAK----AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHH-HHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 344444555555544444444332 445555566666777777777777766666655555554444444
No 88
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.55 E-value=1.4e+02 Score=33.01 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHhhhh
Q 001278 503 QREIEAIRLDKEAFEATMRHEQLVLSE---KAKNDRRKMLE-EFEMQRMN 548 (1109)
Q Consensus 503 krelE~L~~ekEsF~~~M~hE~s~~~e---k~q~Er~d~l~-d~Emqkre 548 (1109)
+.+|-..+..++.|+...++||..|.+ |+-.=..++.. =++|-+|+
T Consensus 144 ~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn 193 (202)
T PF06818_consen 144 RAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRN 193 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888999999999999974 33333344433 34554443
No 89
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=72.30 E-value=2.4e+02 Score=34.52 Aligned_cols=301 Identities=22% Similarity=0.255 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHH
Q 001278 336 RVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKS 415 (1109)
Q Consensus 336 ~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~ 415 (1109)
++.+.+.......... |-..|.....+...--.-|..=+++|.+++.++......-..=..++..+.-..++...--.
T Consensus 98 r~~e~e~~~~~~~~~~--~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve 175 (522)
T PF05701_consen 98 RAKELEQGIAEEASVA--WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVE 175 (522)
T ss_pred HHHHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443332 44555555555666666677777777777777777766666666666666666665544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001278 416 ELLRLQSQLKQQIETYRHQQELLLKEHEDL----QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERL 491 (1109)
Q Consensus 416 E~lrLqseLKeEId~~R~Qke~LlkEae~L----k~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erL 491 (1109)
+|..==..||+.|+.++.-...-.++.-.+ .+.+..|+.+-+.-.++-..|.+++..+..=.-+|.... .+-..|
T Consensus 176 ~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~-~~l~~L 254 (522)
T PF05701_consen 176 ELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEAS-AELESL 254 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333333458888888765333322222222 244555555555555555555555544433333333322 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHHHH
Q 001278 492 KKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQE------AELLNRRDKMEKELQ 565 (1109)
Q Consensus 492 K~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe------~~~~~r~Ee~E~~L~ 565 (1109)
+.+...... ..++... +.-.-...++..-..+..+++--+.+|+ +.|..-.+-+...|
T Consensus 255 q~El~~~~~---~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL- 318 (522)
T PF05701_consen 255 QAELEAAKE---SKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSEL- 318 (522)
T ss_pred HHHHHHHHH---HHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 443222222 2222211 0111111122222222222222222221 11222222222222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHH
Q 001278 566 ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF 645 (1109)
Q Consensus 566 EREk~FEeek~~EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~ 645 (1109)
++.+. ++..+..--..+...+..+..++.++..+-.-+...-.+......+|...+..|..-.+..+.-.+..
T Consensus 319 e~~K~-------el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~ 391 (522)
T PF05701_consen 319 EKEKE-------ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEA 391 (522)
T ss_pred HHHHH-------HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111111123333444444555554444444444445556677778888888888888888878888
Q ss_pred HHHHHHHHHHHHhhccc
Q 001278 646 KREKERFLEFVEKHTSC 662 (1109)
Q Consensus 646 ~~eRe~fl~~vEk~K~c 662 (1109)
..+-.+....+++.+.+
T Consensus 392 ~~E~~~~k~E~e~~ka~ 408 (522)
T PF05701_consen 392 KEEVEKAKEEAEQTKAA 408 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888887743
No 90
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=72.03 E-value=2e+02 Score=33.41 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001278 551 AELLNRRDKMEKELQERTRT 570 (1109)
Q Consensus 551 ~~~~~r~Ee~E~~L~EREk~ 570 (1109)
..+-.+..+++..|..+.++
T Consensus 134 ~~lvq~I~~L~k~le~~~k~ 153 (294)
T COG1340 134 RELVQKIKELRKELEDAKKA 153 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 91
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.13 E-value=1.4e+02 Score=36.39 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 001278 426 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 505 (1109)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 505 (1109)
.+++..|+.-+++..|++.|+++--.-+++=..+.-|-.+++--+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999998888888888888888888877777777765544 44555666666666666666
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001278 506 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRR 557 (1109)
Q Consensus 506 lE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~ 557 (1109)
-+.++.+.-+.-. ++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhhh
Confidence 6555544433322 33366666666655554443
No 92
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.35 E-value=78 Score=39.63 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=36.9
Q ss_pred ccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHH--------hHHHHhhhhHHHHHHHHhhhhhHHHhHH
Q 001278 83 EKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELE--------MKLQELESRESVIKRERLSLVTEREAHE 153 (1109)
Q Consensus 83 esKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~e--------RkL~evEaRE~~LrRerlSf~~Erea~E 153 (1109)
+.|...+..-..-+.+...++..+|..|++.++.--+++..+. .+|.++..+=...+-++....+-.....
T Consensus 186 ~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 186 AAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555666666777777777777766655544322 3444444444444444444444333333
No 93
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.30 E-value=1.4e+02 Score=30.21 Aligned_cols=72 Identities=32% Similarity=0.439 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 001278 334 SDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK 408 (1109)
Q Consensus 334 ~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 408 (1109)
..+|+++-..+..++..+..++..+ .+.+......+...++++..++.-++..++....+.++...+.++|+
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l---~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQL---QKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 44456666778888999999999999999999999999988887775
No 94
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.27 E-value=1e+02 Score=35.35 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001278 412 EEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQ 446 (1109)
Q Consensus 412 eEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk 446 (1109)
.+.+.|..-..++.++.+.+-.|........+.|+
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556667777777777777777777775
No 95
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.21 E-value=3.2e+02 Score=33.65 Aligned_cols=62 Identities=26% Similarity=0.368 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 001278 421 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK 482 (1109)
Q Consensus 421 qseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek 482 (1109)
...|.++|..+..+...+...+......-..+..+|+.|.++..++.++...|.+.=..|.+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777778888888888888888888888999999999999998888877765554443
No 96
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.11 E-value=1.1e+02 Score=35.04 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=8.2
Q ss_pred HHhhhhhcHHHHHHH
Q 001278 620 QQLGMRKDIDELDIL 634 (1109)
Q Consensus 620 q~~em~kdIdeL~~l 634 (1109)
.|.||+.=...+.-|
T Consensus 167 ~W~EINAA~Gq~~LL 181 (314)
T PF04111_consen 167 EWNEINAAWGQTALL 181 (314)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 577776655554443
No 97
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.07 E-value=1.7e+02 Score=32.64 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH---H
Q 001278 410 NEEEKSELLRLQSQLKQQIETYRHQQE---LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK---L 483 (1109)
Q Consensus 410 teeEr~E~lrLqseLKeEId~~R~Qke---~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek---~ 483 (1109)
...=..+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--+|..=.-.|+...+....+|.+... .
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r 85 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777777666543 3456777777777777777766666666666666555555544332 2
Q ss_pred HHhHHHHhHHHHHHHHHHH
Q 001278 484 QHSAEERLKKEECAMRDYV 502 (1109)
Q Consensus 484 ~~~E~erLK~Ek~~~r~~~ 502 (1109)
++.|...||.+-+.||..|
T Consensus 86 ~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 86 LYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3346666666666665553
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.84 E-value=1.9e+02 Score=30.16 Aligned_cols=68 Identities=24% Similarity=0.426 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001278 424 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERL 491 (1109)
Q Consensus 424 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erL 491 (1109)
|--+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.+-+.....++
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888899999999999999999999999999999999999988888887765544443
No 99
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=63.64 E-value=5.3e+02 Score=35.25 Aligned_cols=130 Identities=17% Similarity=0.223 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhhHHhhHHhHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001278 233 LVVKEREADCLRSTVEMKEKRLLTIEEKL--NARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALD 310 (1109)
Q Consensus 233 L~~kEke~~~~~~~Le~KEkeLl~leEKL--~aRE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e 310 (1109)
...-|+.+.+.-..|...|.-+..|.-|. ++++-..|+++.+--...--.-++.|+ .|...-+.++.=|+.|.....
T Consensus 1607 t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~~~r~~g~~ 1685 (1758)
T KOG0994|consen 1607 TAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLLEKRMEGSQ 1685 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcch
Confidence 34445555555566666666666665554 356667777776654433333344455 555444444444443322111
Q ss_pred hhhhhhhhhHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 001278 311 QQEFEISHREEKLERR----EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLEL 367 (1109)
Q Consensus 311 ~rEvel~h~Eekl~kr----EqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ 367 (1109)
.-..+=++|..+ -.+-+.++..|+++|-.+..+..+|.-+...|--.+|+++.
T Consensus 1686 ----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1686 ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 111111111111 12234455555555555555555555555444444444443
No 100
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.63 E-value=92 Score=35.01 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=67.8
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001278 414 KSELLRLQ-----SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 488 (1109)
Q Consensus 414 r~E~lrLq-----seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~ 488 (1109)
|.=+-.|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 33455666 899999999999999999999999999999999999999999999999988887766543 556
Q ss_pred HHhHHHHHHHHH
Q 001278 489 ERLKKEECAMRD 500 (1109)
Q Consensus 489 erLK~Ek~~~r~ 500 (1109)
.+|+..-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667766665544
No 101
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=61.77 E-value=4.6e+02 Score=33.90 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHHH
Q 001278 590 EGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFK 646 (1109)
Q Consensus 590 ~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~~ 646 (1109)
..|+-|++.|.-+|+++|-.++..-=+|-.+...|+.-.+..-.+..-|.+-|..|.
T Consensus 865 eGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~ 921 (961)
T KOG4673|consen 865 EGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYA 921 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456777888888888888877777777777777777777777777777776665554
No 102
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=61.59 E-value=3.8e+02 Score=32.87 Aligned_cols=147 Identities=19% Similarity=0.231 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 357 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQE 436 (1109)
Q Consensus 357 sL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke 436 (1109)
.|....++|+.-+..|.+=+.++..|...++.++.+++..+..+..-+++.......= +.|..++..+|.+..
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence 3677778888888888888888888888888888888877777777666655444332 334444444444444
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHH
Q 001278 437 LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAF 516 (1109)
Q Consensus 437 ~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF 516 (1109)
.+..+..+.+ ..|..|--.-.++..|++....+. .....|-..++.+-..++..+.-=-..|......+
T Consensus 355 a~~~~e~~~k-------~~~~~l~~~Lqql~~Eae~Ak~ea----~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 355 AAKAEEEKAK-------EAMSELPKALQQLSSEAEEAKKEA----EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHhhhcchh-------hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332221 122222223333333333322111 12234455555555555555554444444444444
Q ss_pred HHHHH
Q 001278 517 EATMR 521 (1109)
Q Consensus 517 ~~~M~ 521 (1109)
.+-..
T Consensus 424 eaaKa 428 (522)
T PF05701_consen 424 EAAKA 428 (522)
T ss_pred HHHHH
Confidence 44333
No 103
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=60.99 E-value=4e+02 Score=32.93 Aligned_cols=86 Identities=29% Similarity=0.311 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001278 410 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 489 (1109)
Q Consensus 410 teeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~e 489 (1109)
..+=|.|--.||++||.=--.|++=.+.-+.|. |+|-+|=-.|=.+|-=--.-..|..++...|-.+++-.-+--+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999998888888887 6899999999888866556666788898999999999999999
Q ss_pred HhHHHHHHHH
Q 001278 490 RLKKEECAMR 499 (1109)
Q Consensus 490 rLK~Ek~~~r 499 (1109)
+||.||..-.
T Consensus 482 lLkrEKe~~E 491 (527)
T PF15066_consen 482 LLKREKETRE 491 (527)
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 104
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=59.83 E-value=3.2e+02 Score=31.92 Aligned_cols=121 Identities=16% Similarity=0.347 Sum_probs=98.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 001278 382 LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 461 (1109)
Q Consensus 382 lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 461 (1109)
|-..|+.-...|.+---+++.+.-+|.--..++.|+++ +...+=|+.+++|..+|+..++ .+|+++++.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455555666777778899999999999999999995 5567889999999999997765 578899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcH
Q 001278 462 KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK 513 (1109)
Q Consensus 462 KR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek 513 (1109)
+--.|..=+.+|..==--++|+++.-.| +|-..|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777887776665 577888888888888887643
No 105
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.93 E-value=6.7e+02 Score=33.92 Aligned_cols=214 Identities=21% Similarity=0.231 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH----
Q 001278 426 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY---- 501 (1109)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~---- 501 (1109)
.+++.++.+++-|+.+..+|.. +.+ |-....-|..-|+..+.+..-+-+.+.+-+ +.+.+|...+.+.
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l----~~~~~El~~~~~~i~~~ 723 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSL----EQNELELQRTESEIDEF 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555 333 444445555555555555544444444222 2333444444433
Q ss_pred ------HHHHHHHhhhcHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001278 502 ------VQREIEAIRLDKEAFEATMRHEQLVLSE----------------KAKNDRRKMLEEFEMQRMNQEAELLNRRDK 559 (1109)
Q Consensus 502 ------~krelE~L~~ekEsF~~~M~hE~s~~~e----------------k~q~Er~d~l~d~EmqkreLe~~~~~r~Ee 559 (1109)
+++.++.......+..-.|..=-+.+|. ..+++.++=++.|+-|+--|++.|+=-+..
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~ 803 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQK 803 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecc
Confidence 3455555555555555555422222221 127888888889999999888887643331
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhh
Q 001278 560 MEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLY 639 (1109)
Q Consensus 560 ~E~~L~EREk~FEeek~~EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk 639 (1109)
--..=-+|...+=+.-+.++..+.--.+.+.+++-.+ .+|.. ++ ..-=++.+.+|.+.++...-|+..-.||.
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~ 876 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELTKLD 876 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111123444444555566666666666666666665 44433 22 22223455566666666666665555555
Q ss_pred hh-------HHHHHHHHHHHHH
Q 001278 640 GD-------REQFKREKERFLE 654 (1109)
Q Consensus 640 ~q-------RE~~~~eRe~fl~ 654 (1109)
.+ ++.+..||-.+|.
T Consensus 877 ~~i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 877 KEITSIESKIERKESERHNLLS 898 (1141)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 54 4555555554443
No 106
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.65 E-value=4.8e+02 Score=31.82 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001278 380 QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE 455 (1109)
Q Consensus 380 ~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 455 (1109)
...+..|+--+..+..........+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+.+..+-|.+
T Consensus 174 ~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 174 AAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333444444445555566666666654 346777788888888888888888888888776644
No 107
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=53.77 E-value=3.7e+02 Score=30.31 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHH
Q 001278 57 EKQCVADLEKALRD 70 (1109)
Q Consensus 57 EKqCVadLEKAL~e 70 (1109)
+-+|.+-+++|+.-
T Consensus 38 e~e~~~A~~~A~~~ 51 (297)
T PF02841_consen 38 EAENRAAVEKAVEH 51 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33455555555533
No 108
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=53.62 E-value=2.5e+02 Score=28.25 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001278 377 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 456 (1109)
Q Consensus 377 eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 456 (1109)
..+..+...+..++..+..+-.....++++.+--=---.+...-=..||.+...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555666666666667666777766643111111111222346777777777777788888887777777777777
Q ss_pred hhhHHhHHHHHHHHHHHHHHH
Q 001278 457 EVLDEKRDEINKEQEKIADEK 477 (1109)
Q Consensus 457 E~LDEKR~el~kE~~~I~eEr 477 (1109)
+ +-+..|.++...+..-.
T Consensus 97 ~---~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQRI 114 (132)
T ss_pred H---HHHHHHHHHHHHHHHHH
Confidence 5 34455555555444333
No 109
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=52.05 E-value=3.5e+02 Score=29.57 Aligned_cols=111 Identities=18% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHH
Q 001278 515 AFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRE--RVLNDIAHLKEVAEGE 592 (1109)
Q Consensus 515 sF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~L~EREk~FEeek~--~EL~~In~lke~a~~E 592 (1109)
+|+.+=.+++..-..++...-.+-...|+-.|.+|......+..+++..|-++++.+-.-+. ..|..|..+++-..+|
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------hHhhHHHHHhhhh
Q 001278 593 IQEIKSERDQLEKEKHEVKV--------NREKLQEQQLGMR 625 (1109)
Q Consensus 593 ~E~v~~E~~rLekEr~Ei~~--------~ke~le~q~~em~ 625 (1109)
|..+.-++.++..+-.+-.- .|.+|+.+..+++
T Consensus 87 I~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~ 127 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELK 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 110
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=51.80 E-value=2.2e+02 Score=31.63 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=21.5
Q ss_pred hcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhh
Q 001278 97 EGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLS 144 (1109)
Q Consensus 97 eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlS 144 (1109)
+.+..+.+.+|...+.....+...-.....+...++..-..++.++..
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~ 51 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEE 51 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544444444444444444443333333333333
No 111
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=51.74 E-value=4.1e+02 Score=30.20 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhh
Q 001278 132 ESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTL 184 (1109)
Q Consensus 132 EaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~l 184 (1109)
.++...+......|.++...++..+..-+..+..++..+...+..+...+..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555554444444444444333
No 112
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=49.86 E-value=3.1e+02 Score=28.21 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=29.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 406 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 442 (1109)
Q Consensus 406 ~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEa 442 (1109)
.++.++.|-.+|+.|=..|-.-|.+||.....|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 3456788999999999999999999998877664443
No 113
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.64 E-value=6.2e+02 Score=31.28 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001278 323 LERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 400 (1109)
Q Consensus 323 l~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi 400 (1109)
+....+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|+..|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456677777788888888888888888887777776443 44555555544544444444555555555555544
No 114
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=47.54 E-value=22 Score=46.93 Aligned_cols=17 Identities=35% Similarity=0.786 Sum_probs=14.3
Q ss_pred chHHHhhhhhhhccCCC
Q 001278 731 MSWLRKCTSKIFSISPI 747 (1109)
Q Consensus 731 ~SwlrKCtskIFk~SP~ 747 (1109)
-+.++|||--|+.++|-
T Consensus 1488 ~~Lir~~T~aii~ldpL 1504 (3015)
T KOG0943|consen 1488 HCLIRKCTAAIILLDPL 1504 (3015)
T ss_pred HHHHHHHhHHhhhcccc
Confidence 36789999999999984
No 115
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.46 E-value=4.4e+02 Score=34.01 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=15.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 001278 9 KEWTSKIEELRQSFEETQEILK 30 (1109)
Q Consensus 9 KEwtSK~eel~qa~~eae~~lK 30 (1109)
-.+...++++...++.+.++..
T Consensus 34 l~P~~~~~~i~~~l~~~~e~~~ 55 (771)
T TIGR01069 34 LKPPKSVEESKEIIIKLTALGS 55 (771)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 3456677888888887777654
No 116
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.06 E-value=4.1e+02 Score=34.35 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 358 VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQEL 437 (1109)
Q Consensus 358 L~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~ 437 (1109)
+...=.+|+.++.+++..++++..+..++++.+..++.++.++.++.++ .+..+..+..+-|...|.+-+.
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~---------~~~~~~~~a~~~l~~a~~~~~~ 588 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK---------LLEEAEKEAQQAIKEAKKEADE 588 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555555555555555444444433222 2223344444555555555555
Q ss_pred HHHHHh
Q 001278 438 LLKEHE 443 (1109)
Q Consensus 438 LlkEae 443 (1109)
++++..
T Consensus 589 ~i~~lk 594 (782)
T PRK00409 589 IIKELR 594 (782)
T ss_pred HHHHHH
Confidence 555544
No 117
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.82 E-value=1.9e+02 Score=36.53 Aligned_cols=65 Identities=29% Similarity=0.379 Sum_probs=45.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001278 406 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA 474 (1109)
Q Consensus 406 ~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~ 474 (1109)
.++-.+.|-++|.+.=.+||.+|++++.+...+..+++ .+.+-.+|-+.+|..-..|++++..=.
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777888888888888888877776 455556777777777777777765433
No 118
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.52 E-value=7.7e+02 Score=31.90 Aligned_cols=292 Identities=21% Similarity=0.229 Sum_probs=136.0
Q ss_pred chhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhH
Q 001278 99 KSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLS 178 (1109)
Q Consensus 99 KslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~ 178 (1109)
+......=+|.+.-++||+.--...++-++-++.--=....-+.-+.-+...-.++.|..|+..|.+--++++..+.+|.
T Consensus 138 ~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~ 217 (716)
T KOG4593|consen 138 NLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLE 217 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555554444444444443333222222222334456667789999999999998888888888877
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHH
Q 001278 179 ELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIE 258 (1109)
Q Consensus 179 ~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~le 258 (1109)
..-...-|+.+-+ .-+. ..-+|+...+.+..-..-|.+.+-.+. .+-
T Consensus 218 e~~~~~qq~a~~~----~ql~-~~~ele~i~~~~~dqlqel~~l~~a~~----------------------------q~~ 264 (716)
T KOG4593|consen 218 ERADHEQQNAELE----QQLS-LSEELEAINKNMKDQLQELEELERALS----------------------------QLR 264 (716)
T ss_pred HHHHHHHHHhhHH----HHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH
Confidence 7666555555332 1111 233666666666655555544433333 232
Q ss_pred HHHh-hHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 001278 259 EKLN-ARERVEIQKLLDDQRAILDAKQQEFE--------LELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQA 329 (1109)
Q Consensus 259 EKL~-aRE~~eIQKLldeh~a~L~~Kk~eFE--------lElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqa 329 (1109)
+.++ .|+.-..-.+|.+-.--|.+|...|+ +||++ ..|..|..-|+--..+....=.+..=-++.
T Consensus 265 ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN------~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~ 338 (716)
T KOG4593|consen 265 EELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELEN------EDLLTKLQRWERADQEMGSLRTPEDLMEKL 338 (716)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHhhhhhccCCHHHHHHHH
Confidence 3332 23333333333333334444433333 23332 235666666666665533111111111111
Q ss_pred HHHhhh--HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 001278 330 LDKKSD--RVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKL 407 (1109)
Q Consensus 330 Le~k~~--~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~L 407 (1109)
++..+. .+..+-.-+..=...+..-..-++...|. -+.+..+.....+++..-..+..-++..-.+......+....
T Consensus 339 ~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~-~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~ 417 (716)
T KOG4593|consen 339 VNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQ-VAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGS 417 (716)
T ss_pred HHHHHHHhhhccccccccCcccchHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111111 11111111111111222223333333222 222333333344444444444445555556666666666666
Q ss_pred hccHHHHHHHHHHHHHHHHHHHH
Q 001278 408 KINEEEKSELLRLQSQLKQQIET 430 (1109)
Q Consensus 408 kiteeEr~E~lrLqseLKeEId~ 430 (1109)
+.-+.-=..++..+++.+++|+-
T Consensus 418 ~~~~krl~~~l~~~tk~reqlk~ 440 (716)
T KOG4593|consen 418 KDDEKRLAEELPQVTKEREQLKG 440 (716)
T ss_pred cchHHHHHHHhHHHHHHHHHHHH
Confidence 66655556666666666555543
No 119
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.39 E-value=4.3e+02 Score=34.14 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=30.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 369 KQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 442 (1109)
Q Consensus 369 k~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEa 442 (1109)
...|..++.+++..+.++++.+.+++..+.++.++.+.|+. ..+.-+..+..+..+-|...|.+-+.+.++.
T Consensus 517 i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~--~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE--RERNKKLELEKEAQEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333322 1222233445555566666666555555544
No 120
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=45.83 E-value=6.1e+02 Score=30.49 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=12.2
Q ss_pred HHHHhhhHH-HHHHHHHHHHHhhHHHHH
Q 001278 329 ALDKKSDRV-KEKENDLAARLKSVKERE 355 (1109)
Q Consensus 329 aLe~k~~~l-keKEkdl~~k~k~LKEkE 355 (1109)
|++++.++| ++.|.|-..+...-++=+
T Consensus 111 AaE~khrKli~dLE~dRe~haqdaaeGD 138 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEADREAHAQDAAEGD 138 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 344444443 444555555544444433
No 121
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.23 E-value=2.9e+02 Score=29.69 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHH
Q 001278 380 QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE 416 (1109)
Q Consensus 380 ~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E 416 (1109)
..++..++++...++.-...|...+..|...+..|.+
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444455555555555555555555555554444444
No 122
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=44.03 E-value=9.3e+02 Score=32.13 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHHhhhhhHHHHH---------HHHHHHHHHhhhhhhhhhccccchhhHHh
Q 001278 41 SEAEKREDNLRRALSMEKQCVA---------DLEKALRDMGEERAQTKLFSEKTLTDANT 91 (1109)
Q Consensus 41 sEaeKREEnLkKALgvEKqCVa---------dLEKAL~emr~E~AeiK~~sesKlaeA~a 91 (1109)
+...-|.+-|.+.+|++.-.-. .....+..++..+..+-..++..++....
T Consensus 164 a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~ 223 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTA 223 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHH
Confidence 3557789999999999986421 12334445555555444444444444433
No 123
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.42 E-value=7.8 Score=48.17 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHH
Q 001278 316 ISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQ 395 (1109)
Q Consensus 316 l~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~ 395 (1109)
+.|.=+++.+.|..+++-..+|.+. .+|..+++.|++.=..+.----.||.+....-.-+..|..|+..|..+...+.+
T Consensus 303 lR~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 303 LREKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777666666664 356666777766554443333334444444444444555555555544444444
Q ss_pred HHHH
Q 001278 396 QELQ 399 (1109)
Q Consensus 396 q~~q 399 (1109)
...+
T Consensus 382 ~~~~ 385 (713)
T PF05622_consen 382 ESRR 385 (713)
T ss_dssp ----
T ss_pred HHHH
Confidence 4433
No 124
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.00 E-value=6.5e+02 Score=29.69 Aligned_cols=203 Identities=24% Similarity=0.330 Sum_probs=94.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 001278 371 KLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELL--------------RLQSQLKQQIETYRHQQE 436 (1109)
Q Consensus 371 ~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l--------------rLqseLKeEId~~R~Qke 436 (1109)
.|++-.+-|..|-.+|++.+.+-..=+..+.+=++.....+.-..++. .=+..|=+-+-.+|.+-.
T Consensus 3 KL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk 82 (319)
T PF09789_consen 3 KLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNK 82 (319)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHH
Confidence 455555555555555555555444444444333322222222111111 012333344444555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhh
Q 001278 437 LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA-----DEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRL 511 (1109)
Q Consensus 437 ~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~-----eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ 511 (1109)
-|..|.+.|++...--..+--+|-++-+..+-....+. .+|+.|=..+ +.++..- .++++++-++--
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL----Ek~~~q~----~qLe~d~qs~lD 154 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL----EKLREQI----EQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH----HHHHHHH----HHHHHHHHHHHH
Confidence 55555555555444444444444444333322221111 3344333332 2222222 233444444444
Q ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001278 512 DKEAFEATMRHEQLVLSEKAK---NDRRKMLEEFEMQRMNQEAE-LLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKE 587 (1109)
Q Consensus 512 ekEsF~~~M~hE~s~~~ek~q---~Er~d~l~d~EmqkreLe~~-~~~r~Ee~E~~L~EREk~FEeek~~EL~~In~lke 587 (1109)
++++++ -||+..-.|+. .|-+.+|.+=+..--+++.- |+| +||++|-+..++|+.--..+|+-.|.
T Consensus 155 EkeEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 155 EKEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444432 34444444433 34444444322222222222 223 69999999999999999999998887
Q ss_pred HHHH
Q 001278 588 VAEG 591 (1109)
Q Consensus 588 ~a~~ 591 (1109)
++.+
T Consensus 225 ~le~ 228 (319)
T PF09789_consen 225 ALER 228 (319)
T ss_pred HHHh
Confidence 7653
No 125
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.93 E-value=2.5e+02 Score=29.00 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001278 422 SQLKQQIETYRHQQELL 438 (1109)
Q Consensus 422 seLKeEId~~R~Qke~L 438 (1109)
.+|++||..+......|
T Consensus 119 ~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 126
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=41.78 E-value=6.5e+02 Score=29.66 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccccc
Q 001278 627 DIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKN 664 (1109)
Q Consensus 627 dIdeL~~ls~KLk~qRE~~~~eRe~fl~~vEk~K~ckn 664 (1109)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+-=.
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999996444
No 127
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.33 E-value=6.2e+02 Score=32.83 Aligned_cols=94 Identities=24% Similarity=0.252 Sum_probs=48.8
Q ss_pred hhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001278 202 ERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILD 281 (1109)
Q Consensus 202 ekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQKLldeh~a~L~ 281 (1109)
..-++.|+..+......+-..=.+|+..-..+-.+..++......++....+|....++|..+....++++..+.+.+|.
T Consensus 501 ~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~ 580 (782)
T PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIK 580 (782)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333322223333333333334444455555555566666666666666677777777777777776
Q ss_pred HhhhHHHHHHHHHh
Q 001278 282 AKQQEFELELEEKR 295 (1109)
Q Consensus 282 ~Kk~eFElElE~kR 295 (1109)
.-+.+.+.=+...|
T Consensus 581 ~a~~~~~~~i~~lk 594 (782)
T PRK00409 581 EAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665554444443
No 128
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=40.93 E-value=3.6e+02 Score=36.11 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=6.0
Q ss_pred HHHHHHHHhhccc
Q 001278 650 ERFLEFVEKHTSC 662 (1109)
Q Consensus 650 e~fl~~vEk~K~c 662 (1109)
..|+.-++....|
T Consensus 527 ~~~~~~~~~~~~~ 539 (1021)
T PTZ00266 527 SYFLKGMENGLSA 539 (1021)
T ss_pred hhhhhhccccccc
Confidence 3445555544444
No 129
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=40.51 E-value=9.7e+02 Score=31.33 Aligned_cols=89 Identities=26% Similarity=0.343 Sum_probs=56.4
Q ss_pred hhhHHHHHhh---hhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Q 001278 175 ERLSELRRTL---NQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKE 251 (1109)
Q Consensus 175 erL~~~qr~l---NqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KE 251 (1109)
.+|-+.|-+| ..||.++.|.+..+.+...-||.-.+.++.--.. .+.+|..|-..+..+|.-+-..+..+-..|
T Consensus 481 k~~~~a~gvldaaaarErrAsE~eas~r~R~~ALEara~ALeERAr~---~e~~L~~Re~a~a~Re~TLAahEaa~AE~E 557 (828)
T PF04094_consen 481 KRVDDARGVLDAAAARERRASEAEASLRAREEALEARAKALEERARA---AERSLEERERAAAQREATLAAHEAAAAEEE 557 (828)
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4566677777 5699999999999988888899888877554222 223455555555555554444444444555
Q ss_pred HhHHHHHHHHhhHHH
Q 001278 252 KRLLTIEEKLNARER 266 (1109)
Q Consensus 252 keLl~leEKL~aRE~ 266 (1109)
..|...++-++.|++
T Consensus 558 ~aLRLREeA~aER~~ 572 (828)
T PF04094_consen 558 SALRLREEALAERDR 572 (828)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 130
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.60 E-value=8.6e+02 Score=30.47 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=26.4
Q ss_pred HHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHH
Q 001278 240 ADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEE 300 (1109)
Q Consensus 240 ~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~ee 300 (1109)
+..++..++.-+..|..++..+..- . .-+.+.+..|..++...+.++...++.+-.
T Consensus 232 i~~l~~ele~a~~~l~~l~~~~~~~-G----G~~~~~r~~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 232 IAHLRNELEEAQRSLESLEKKFRSE-G----GDLFEEREQLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555444431 1 122333455555566666665555555543
No 131
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.20 E-value=1e+03 Score=31.20 Aligned_cols=291 Identities=23% Similarity=0.338 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHH----HHhhhhhhhhhhHHHHHHHHHHHHHhhhHH-HHHH
Q 001278 267 VEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKIS----ALDQQEFEISHREEKLERREQALDKKSDRV-KEKE 341 (1109)
Q Consensus 267 ~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~----~~e~rEvel~h~Eekl~krEqaLe~k~~~l-keKE 341 (1109)
---|.|-..+.-.++.--+-||.|+-++.+-+|-||++=.+ .+|.-|.+-.|+ |---..++ -|.|
T Consensus 808 R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~r----------lR~eakRir~EQe 877 (1187)
T KOG0579|consen 808 RQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHR----------LRNEAKRIRIEQE 877 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhH
Confidence 33456666666666777788999999999999888876432 233333333332 11111111 1233
Q ss_pred HHHHH---HHhhHHHHHH-------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--------HHHHHH
Q 001278 342 NDLAA---RLKSVKEREK-------------FVKAEEKKLELEKQKLIADKESLQILKVEIDQIES--------ENAQQE 397 (1109)
Q Consensus 342 kdl~~---k~k~LKEkEk-------------sL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a--------~~e~q~ 397 (1109)
+|+.. ++|.-|...+ +|+.--.+++-+++ +++|+=+.+.+.+++-++- ++..-.
T Consensus 878 kd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~q--l~ekdFv~kqqq~le~~lkrm~~~~k~ema~iE 955 (1187)
T KOG0579|consen 878 KDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQ--LKEKDFVMKQQQNLEAMLKRMAEKHKEEMASIE 955 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33322 2222222211 33333334444443 3455555555555554433 222222
Q ss_pred HHHHHHHhh-hhccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhHHhHHHH
Q 001278 398 LQIQEECQK-LKINEEEK---------SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE-WEVLDEKRDEI 466 (1109)
Q Consensus 398 ~qi~ee~e~-LkiteeEr---------~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E-WE~LDEKR~el 466 (1109)
++..--+++ |.+-+.-- .-|.-+.-+|| |.|=+|.-.|++-.+.=..|-+++--+ -+.| ||..-
T Consensus 956 recLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlK---DqYflqRhqlL~rHekE~eQmqrynQr~ie~L--k~rqt 1030 (1187)
T KOG0579|consen 956 RECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLK---DQYFLQRHQLLARHEKEMEQMQRYNQREIEDL--KRRQT 1030 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 222222222 22222111 12222333444 445555555676666666666665432 2222 22221
Q ss_pred H--------------------HHHHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 001278 467 N--------------------KEQEKI------ADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATM 520 (1109)
Q Consensus 467 ~--------------------kE~~~I------~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M 520 (1109)
+ |+--+| ++.|+++..|-.-|+.|-|.+..+-.-.+.+++-.|....++-+-..
T Consensus 1031 qerarLPKiqRSE~KTRmaMfKkSLrIn~~~s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~ni~EL 1110 (1187)
T KOG0579|consen 1031 QERARLPKIQRSETKTRMAMFKKSLRINANMSNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEENIIEL 1110 (1187)
T ss_pred HHHhhcchhhhhhhHHHHHHHHHheeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111122 57899999999999999999999888888888888888777655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001278 521 RHEQLVLSEKAKNDRRKMLEEFEMQRM-NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDI 582 (1109)
Q Consensus 521 ~hE~s~~~ek~q~Er~d~l~d~Emqkr-eLe~~~~~r~Ee~E~~L~EREk~FEeek~~EL~~I 582 (1109)
-.+|+|+-.+|-.-|-|+. +|+..-..-++.---.|.-|...+|++-+-++..+
T Consensus 1111 --------~qlQNEKchlLvEhEtqklKelde~h~~~~~~w~e~l~~rk~~lee~~~~~~req 1165 (1187)
T KOG0579|consen 1111 --------DQLQNEKCHLLVEHETQKLKELDEKHHEMRELWQENLIARKTVLEEKFEDELREQ 1165 (1187)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3688999999988888874 56666666677777788888888888877766554
No 132
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.91 E-value=8.4e+02 Score=30.16 Aligned_cols=18 Identities=11% Similarity=0.407 Sum_probs=14.4
Q ss_pred HHHHHHHHhhhcHHHHHH
Q 001278 501 YVQREIEAIRLDKEAFEA 518 (1109)
Q Consensus 501 ~~krelE~L~~ekEsF~~ 518 (1109)
.+.+++|.|.++.-||++
T Consensus 246 km~kdle~Lq~aEqsl~d 263 (575)
T KOG4403|consen 246 KMMKDLEGLQRAEQSLED 263 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788999988888875
No 133
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=38.81 E-value=6.7e+02 Score=29.61 Aligned_cols=155 Identities=22% Similarity=0.343 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH---HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHH
Q 001278 266 RVEIQKLLDDQRAILDAKQQEFEL---ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEN 342 (1109)
Q Consensus 266 ~~eIQKLldeh~a~L~~Kk~eFEl---ElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEk 342 (1109)
+-|+.++|---++.|.+--.+.-+ .|.+.++.++.-+.+--.-+.+-=.+|..-=+||+-||.-|+-++.-|-.+=+
T Consensus 204 ~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr 283 (384)
T KOG0972|consen 204 KLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFR 283 (384)
T ss_pred HHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666665555554 45666777777777777778888889998899999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHhhhhccHHHHH-----
Q 001278 343 DLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQ--QELQIQEECQKLKINEEEKS----- 415 (1109)
Q Consensus 343 dl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~--q~~qi~ee~e~LkiteeEr~----- 415 (1109)
.+..-+..++++-+.+.-- .+.....|..=-.++..+|.++|.-.+.+.+ =..+|.++.-+|+ +|+.
T Consensus 284 ~a~~~lse~~e~y~q~~~g---v~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk---~et~~mnv~ 357 (384)
T KOG0972|consen 284 RATDTLSELREKYKQASVG---VSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK---EETQTMNVQ 357 (384)
T ss_pred HHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH---HHHHhhhhh
Confidence 9999999999887766532 2444445555556666677776655544443 2456666655553 4443
Q ss_pred ----HHHHHHHHHHH
Q 001278 416 ----ELLRLQSQLKQ 426 (1109)
Q Consensus 416 ----E~lrLqseLKe 426 (1109)
+|..||+.|+.
T Consensus 358 igv~ehs~lq~~l~~ 372 (384)
T KOG0972|consen 358 IGVFEHSILQTYLRD 372 (384)
T ss_pred eehhhHHHHHHHHHH
Confidence 57778888876
No 134
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.17 E-value=3.5e+02 Score=28.76 Aligned_cols=76 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred HhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHH
Q 001278 150 EAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDE 225 (1109)
Q Consensus 150 ea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~kedd 225 (1109)
.+.+..+...|++|.+-.|.--+...+|...-.-|...+..+.+....+...+.++..++.+|..-...|+++...
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888888877777777777777777777777776666666665555555543
No 135
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=37.98 E-value=6.5e+02 Score=28.55 Aligned_cols=111 Identities=15% Similarity=0.304 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-HHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 001278 426 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIAD-EKKKLEKLQHSAEERLKKEECAMRDYVQR 504 (1109)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~e-Ere~lek~~~~E~erLK~Ek~~~r~~~kr 504 (1109)
+||+++-.|..++.+....+.+....||++=+.|--+-++-++...+.+. .+..|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999988888877777777666654 3556777777777777555 55666666
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 505 EIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 542 (1109)
Q Consensus 505 elE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~ 542 (1109)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655555 4555666665555555555555555544
No 136
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=37.73 E-value=2.3e+02 Score=34.91 Aligned_cols=30 Identities=30% Similarity=0.425 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001278 419 RLQSQLKQQIETYRHQQELLLKEHEDLQQD 448 (1109)
Q Consensus 419 rLqseLKeEId~~R~Qke~LlkEae~Lk~e 448 (1109)
-.|+=||--||+.|.|...+.-|-.+||-+
T Consensus 507 niq~llkva~dnar~qekQiq~Ek~ELkmd 536 (641)
T KOG3915|consen 507 NIQGLLKVAIDNARAQEKQIQLEKTELKMD 536 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999998888777776644
No 137
>PF14992 TMCO5: TMCO5 family
Probab=37.67 E-value=7.1e+02 Score=28.94 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Q 001278 286 EFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSV 351 (1109)
Q Consensus 286 eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~L 351 (1109)
.++-|+....-.+++. +-.-.-.+.+|.++...|..-++-|..=+--+..+.+..+.++.+...+
T Consensus 36 ~Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 36 SLEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 3444555444444333 1111222667777766665554444433333444466666666665554
No 138
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.55 E-value=4.7e+02 Score=28.14 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHH
Q 001278 376 KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELL 418 (1109)
Q Consensus 376 keel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l 418 (1109)
+..+..|+.+++.+...+..-...|..+...-..+ ++|..++
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l 109 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELL 109 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHH
Confidence 33444455555555555555444554444433333 4555444
No 139
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.17 E-value=6e+02 Score=27.95 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=28.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001278 436 ELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERL 491 (1109)
Q Consensus 436 e~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erL 491 (1109)
..|.+|.+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444555555555555555555555555554444444
No 140
>PLN03188 kinesin-12 family protein; Provisional
Probab=36.82 E-value=8.3e+02 Score=33.73 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=22.3
Q ss_pred HhHHHHHHhhhhhHHHHHHHHHHHH
Q 001278 45 KREDNLRRALSMEKQCVADLEKALR 69 (1109)
Q Consensus 45 KREEnLkKALgvEKqCVadLEKAL~ 69 (1109)
-+-|.|+--|..||.|...|.-||+
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q 1103 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQ 1103 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4557899999999999999999997
No 141
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.77 E-value=5.9e+02 Score=27.69 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=17.6
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Q 001278 309 LDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKER 354 (1109)
Q Consensus 309 ~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEk 354 (1109)
+.+...++.+....+..-.+.++.....+..+.+.+...-..|..+
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444333333333333333333333333333333
No 142
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.63 E-value=2.4e+02 Score=27.27 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=30.7
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001278 399 QIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFE 453 (1109)
Q Consensus 399 qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 453 (1109)
+|.++.+-+...+=|=.|+----..|.++++.+|+....|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455666666666666666666666666665543
No 143
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.01 E-value=3.7e+02 Score=31.66 Aligned_cols=53 Identities=26% Similarity=0.398 Sum_probs=36.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001278 329 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 384 (1109)
Q Consensus 329 aLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~ 384 (1109)
-+..+-..|++.|++|.+|+.-||.- -.-+.++|+..+.+|..|.-.++.-|+
T Consensus 349 rvkekE~elke~Ekel~~kf~~lkr~---h~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 349 RVKEKEAELKEAEKELHEKFDRLKRL---HQEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566788888888888887753 233445778888888877776665554
No 144
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=35.99 E-value=5.1e+02 Score=32.88 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001278 521 RHEQLVLSEKAKNDRRK 537 (1109)
Q Consensus 521 ~hE~s~~~ek~q~Er~d 537 (1109)
+|||..-.++|-++|++
T Consensus 683 e~eRr~eqeRihreRee 699 (940)
T KOG4661|consen 683 EEERRDEQERIHREREE 699 (940)
T ss_pred HHhhcchhhhhhhhHHH
Confidence 34444444444444443
No 145
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.83 E-value=5.2e+02 Score=29.37 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=44.0
Q ss_pred hHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHh
Q 001278 194 NERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLN 262 (1109)
Q Consensus 194 ~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~ 262 (1109)
..+-+.++..+++.+.+.+..+...+++.-.=+..+=+....=|.++-.+++.|+.-+..+..+.+++.
T Consensus 49 far~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 49 FARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334567777777777776666555554444434444445555566777777777777777777777665
No 146
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=35.37 E-value=9.7e+02 Score=29.81 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=3.3
Q ss_pred hhhHHhhHH
Q 001278 244 RSTVEMKEK 252 (1109)
Q Consensus 244 ~~~Le~KEk 252 (1109)
+...+.||.
T Consensus 198 k~m~D~KEr 206 (489)
T PF05262_consen 198 KDMVDIKER 206 (489)
T ss_pred hhhHHHHHH
Confidence 333333333
No 147
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.09 E-value=5.5e+02 Score=26.90 Aligned_cols=100 Identities=28% Similarity=0.257 Sum_probs=70.1
Q ss_pred HHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001278 166 WEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRS 245 (1109)
Q Consensus 166 weKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~ 245 (1109)
|+++-....+-|-..++--.-=+.||.--.+-|...+..++.+....+.++..+-..+..|..=-..|..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777766555555666666666666777777777777777777766666666666666666778888888
Q ss_pred hHHhhHHhHHHHHHHHhhHH
Q 001278 246 TVEMKEKRLLTIEEKLNARE 265 (1109)
Q Consensus 246 ~Le~KEkeLl~leEKL~aRE 265 (1109)
.-+.-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777778877777776543
No 148
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=34.24 E-value=9.6e+02 Score=29.42 Aligned_cols=160 Identities=25% Similarity=0.348 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHHh-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHH
Q 001278 224 DEINSRLAELVVKEREADCLRSTVEMKEKR-LLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEM 302 (1109)
Q Consensus 224 ddi~~rl~~L~~kEke~~~~~~~Le~KEke-Ll~leEKL~aRE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~eeel 302 (1109)
+.|..+|+.|...++. .++..|+.+-.+ +..+..++..+ +..-+. .....-+.+|+.+..+.++.++++|
T Consensus 261 ~~L~~~l~~l~~~~~~--~l~~~L~~q~~e~~~~~~~~~~~~----le~~~~---~~~~~~~~e~~~~~~~l~~~~~~~L 331 (582)
T PF09731_consen 261 DALQKELAELKEEEEE--ELERALEEQREELLSKLREELEQE----LEEKRA---ELEEELREEFEREREELEEKYEEEL 331 (582)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666655554 555666665444 44444433322 222211 2333445677777777777777777
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHH-HH-HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Q 001278 303 RSKISALDQQEFEISHREEKLERREQALDKKSDRV-KE-KENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQ 380 (1109)
Q Consensus 303 ~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~l-ke-KEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~ 380 (1109)
+.....- .+.-..|....|....+.|.....+. ++ .+.+-.+++..|.+.-..|...++-+...-. ....-..+.
T Consensus 332 ~~eL~~~--~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~-~~~~~~~~~ 408 (582)
T PF09731_consen 332 RQELKRQ--EEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSE-AEDENRRAQ 408 (582)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 7644432 22223344444444444444333221 11 1223345666666666666666654444322 223344444
Q ss_pred HHHHHHHHHHhHHHH
Q 001278 381 ILKVEIDQIESENAQ 395 (1109)
Q Consensus 381 ~lK~elEK~~a~~e~ 395 (1109)
.|-.=|..++..+..
T Consensus 409 ~l~~a~~~l~~~l~~ 423 (582)
T PF09731_consen 409 QLWLAVDALKSALDS 423 (582)
T ss_pred HHHHHHHHHHHHHHc
Confidence 444455555444443
No 149
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=34.14 E-value=9.6e+02 Score=29.40 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhHhhHHHH
Q 001278 602 QLEKEKHEVKVNREKLQEQ 620 (1109)
Q Consensus 602 rLekEr~Ei~~~ke~le~q 620 (1109)
.|-.||.-+.+.-+++..+
T Consensus 410 ~l~~ek~al~lqlErl~~~ 428 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLETQ 428 (511)
T ss_pred HHHhhhhhccccHHHHHHH
Confidence 5556666666666665544
No 150
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=34.12 E-value=8.8e+02 Score=28.93 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=20.7
Q ss_pred hhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccc
Q 001278 87 TDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKS 121 (1109)
Q Consensus 87 aeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~ 121 (1109)
..+.....-++....+++.+|..|+..+..--+++
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444555555667777777777776654444
No 151
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.06 E-value=9.8e+02 Score=29.49 Aligned_cols=202 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH-H
Q 001278 422 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEK------EWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK-E 494 (1109)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~------EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~-E 494 (1109)
..++.++..++.+...+..+.+.|+.+....+. ||+.|...+..|..=.+-...-...+.-+ ++.+.... -
T Consensus 171 ~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L--~~~~~~~~~~ 248 (563)
T TIGR00634 171 LKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAAL--RGDVDVQEGS 248 (563)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHH--hCCccccccC
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 495 ECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEK 574 (1109)
Q Consensus 495 k~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~L~EREk~FEee 574 (1109)
-...=....+.+..+ |-..+ .+=...++-+..+-.++..++......|+.+=..-.+
T Consensus 249 ~~~~l~~~~~~l~~~------~d~~~-~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e---------------- 305 (563)
T TIGR00634 249 LLEGLGEAQLALASV------IDGSL-RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE---------------- 305 (563)
T ss_pred HHHHHHHHHHHHHHh------hhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----------------
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHHHHH
Q 001278 575 RERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKRE 648 (1109)
Q Consensus 575 k~~EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~~~e 648 (1109)
-+..|..|+.|+.....-++++...+..++++...+...-..++.-..++..--.+|..+...|-..|...-..
T Consensus 306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~ 379 (563)
T TIGR00634 306 IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAER 379 (563)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 152
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=34.04 E-value=5.1e+02 Score=33.56 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=11.8
Q ss_pred HHhhhhhhhccCCCCcccc
Q 001278 734 LRKCTSKIFSISPIKKSEH 752 (1109)
Q Consensus 734 lrKCtskIFk~SP~K~~e~ 752 (1109)
-|-|-|+...+|-.....|
T Consensus 767 pR~~qs~~~q~~~t~~~~h 785 (1157)
T KOG4278|consen 767 PRQIQSKLKQRSETPELDH 785 (1157)
T ss_pred hHHHHHHhhhcccCCccCC
Confidence 3888887777765443333
No 153
>PF15462 Barttin: Bartter syndrome, infantile, with sensorineural deafness (Barttin)
Probab=33.88 E-value=78 Score=34.69 Aligned_cols=130 Identities=25% Similarity=0.283 Sum_probs=79.1
Q ss_pred CCCCCCCCCCCCCcccccccccchh-hhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcCCCCccCCccccccccCc
Q 001278 814 EYAPSVDGHSYMDSKVEDVAEDSQQ-SELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDS 892 (1109)
Q Consensus 814 ~~~~s~~dqs~~ds~~~~~~edsq~-s~~k~g~r~~grr~k~~v~Rtrsvkavv~daK~ilges~e~~~~~~~~~~~~es 892 (1109)
-|+-|.-|-+-|--|+....+|.-+ .....|+.++| -+.+|-+-.+.+.+-|+.|-.|...+ +++
T Consensus 79 AYdQSLPdfshIQmKvmgysED~rplLap~~gq~q~~-~sdgg~g~p~~~qawveaavvvHRgs-------------de~ 144 (224)
T PF15462_consen 79 AYDQSLPDFSHIQMKVMGYSEDPRPLLAPEPGQPQPG-ASDGGEGGPRDAQAWVEAAVVVHRGS-------------DED 144 (224)
T ss_pred hhhcCCCchhhheeeeeeccCCCCcccCCCcCCCccc-cCCCCCCCCcchhhhhhheeeeecCC-------------ccc
Confidence 3777777778888888887788776 55667777775 33344445678899998888887777 566
Q ss_pred CCCccccccccccccccCCCCCCcccccccC---CCCCCCCcCccccCCCcccccccccccCCCCCcccccccccc
Q 001278 893 QGISSHTQEASNMAKKRRRPQTSKTTQSEKD---GADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHK 965 (1109)
Q Consensus 893 ~g~ss~~~k~~~~~rKR~r~~~s~~~~seqd---~~dSeg~SdSvt~gg~rrKRrq~v~p~~qtpge~rYNLRR~k 965 (1109)
+|.-+.+.-.++-..=.+ ++.--.|=|| .+-|||.|-.-+.-.|.- .-+|. |-|-.-||.|-|--
T Consensus 145 ege~~~tqs~p~p~~~pq---g~APLASfqddlD~gSsegsSp~pSPp~~ee----p~~p~-~~p~a~r~~ld~f~ 212 (224)
T PF15462_consen 145 EGERSPTQSRPGPPACPQ---GPAPLASFQDDLDMGSSEGSSPNPSPPEGEE----PHPPP-QEPWACRCQLDRFH 212 (224)
T ss_pred cCccccccCCCCCCCCCC---CCcccccchhhccccccCCCCCCCCCCcccC----CCCCC-CCcccccCCccccc
Confidence 666555552222111112 2222345554 456888887433331222 22333 67777899987754
No 154
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.23 E-value=8.3e+02 Score=28.37 Aligned_cols=80 Identities=26% Similarity=0.305 Sum_probs=38.7
Q ss_pred HHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhh
Q 001278 124 LEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKER 203 (1109)
Q Consensus 124 ~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kek 203 (1109)
++-.|.+++.|-..|.-+---+.+|.++....+..||-..- +..-+.+.-|.....+.-|--++| +.|.|..-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y---~q~s~Leddlsqt~aikeql~kyi----ReLEQaND 122 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFY---QQESQLEDDLSQTHAIKEQLRKYI----RELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcc
Confidence 34455666666666655555555666655555444442211 112222344555555555544444 33444445
Q ss_pred hHHHHHh
Q 001278 204 DLEELEK 210 (1109)
Q Consensus 204 eLEe~~k 210 (1109)
+||-++.
T Consensus 123 dLErakR 129 (333)
T KOG1853|consen 123 DLERAKR 129 (333)
T ss_pred HHHHhhh
Confidence 5554443
No 155
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=33.18 E-value=1.3e+03 Score=30.47 Aligned_cols=58 Identities=29% Similarity=0.398 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhhHHHHH
Q 001278 298 IEEEMRSKISALDQQEFEISHREEKLERREQALDK--KSDRVKEKENDLAARLKSVKERE 355 (1109)
Q Consensus 298 ~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~--k~~~lkeKEkdl~~k~k~LKEkE 355 (1109)
++++|.+|..+|-+-|--+...-+.+.--|..|-. +++++-+.|-.|..+.+++---+
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~ae 155 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAE 155 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34455555555555554444444444433333322 26677777888888777764433
No 156
>PF13514 AAA_27: AAA domain
Probab=32.65 E-value=1.4e+03 Score=30.72 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=14.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 001278 632 DILCRRLYGDREQFKREKERFLEFV 656 (1109)
Q Consensus 632 ~~ls~KLk~qRE~~~~eRe~fl~~v 656 (1109)
..||.=-++| +|.+=|=.|+.++
T Consensus 1024 ~~LS~GT~dQ--LYLALRLA~~e~~ 1046 (1111)
T PF13514_consen 1024 EELSRGTRDQ--LYLALRLALAELL 1046 (1111)
T ss_pred HHhCHHHHHH--HHHHHHHHHHHHH
Confidence 3455555554 6788887776665
No 157
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.98 E-value=4e+02 Score=33.31 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001278 374 ADKESLQILKVEIDQIESENAQQELQIQE 402 (1109)
Q Consensus 374 ~dkeel~~lK~elEK~~a~~e~q~~qi~e 402 (1109)
+.=.+|...+.++++++.++.+-+.+|..
T Consensus 209 k~p~~i~~~~~e~d~lk~e~~~~~~~i~~ 237 (555)
T TIGR03545 209 KNPLELQKIKEEFDKLKKEGKADKQKIKS 237 (555)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666666666666555555543
No 158
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=31.86 E-value=8.8e+02 Score=28.27 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhH
Q 001278 563 ELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDR 642 (1109)
Q Consensus 563 ~L~EREk~FEeek~~EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qR 642 (1109)
..+.|-.+-..+.+.-|..++-....+=.+|.+..-++..|-.||.....++=.+.. |+
T Consensus 38 ~~~~~~~~~~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v~~ri~~~e---------------------qE 96 (289)
T PF05149_consen 38 AQRKRYAAQRKESEKFLQKNEEQQQELWREIQELERELQDLAEERREEVERRIEMRE---------------------QE 96 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
Confidence 356677778888888999999999999999999999999988888776665544333 33
Q ss_pred HHHHHHHHHHHHHH-----------HhhccccchhhhhHHHHhhcC
Q 001278 643 EQFKREKERFLEFV-----------EKHTSCKNCGEMMRAFVISNL 677 (1109)
Q Consensus 643 E~~~~eRe~fl~~v-----------Ek~K~ckncg~~~~efvlsdL 677 (1109)
+.=..+=+.|+.|. +-+.-|.+|+.++.+||.+-.
T Consensus 97 ~~R~~~~~~Fl~~~~qh~q~L~~~~~n~~~~~~~~~~~~~~V~~~~ 142 (289)
T PF05149_consen 97 AKRRTAAEEFLQAASQHKQRLRRCEENCDRALSCAESLEEYVQEGC 142 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444 444556788999999985443
No 159
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.19 E-value=1.1e+03 Score=29.16 Aligned_cols=135 Identities=20% Similarity=0.271 Sum_probs=80.8
Q ss_pred HhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH----------HH-HHHHHHHHHHhHHHHhHHHHHHHHHHHHHHH----
Q 001278 442 HEDLQQDREKFEKEWEVLDEKRDEINKEQEKI----------AD-EKKKLEKLQHSAEERLKKEECAMRDYVQREI---- 506 (1109)
Q Consensus 442 ae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I----------~e-Ere~lek~~~~E~erLK~Ek~~~r~~~krel---- 506 (1109)
+.-|.++-.-.-.|.|.+|-|+.-++.|--++ ++ |-|-+..++..+.--|++|+..+--.|.++-
T Consensus 52 v~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lT 131 (552)
T KOG2129|consen 52 VSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLT 131 (552)
T ss_pred HHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhcc
Confidence 33343433333344555555655555542211 22 3345566888888888888888877776654
Q ss_pred -------HHhhhcHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHH---hhhhHHHHHHHHHHHHHHHHHHHHH
Q 001278 507 -------EAIRLDKEAFEATMRHEQLVLS----EKAKNDRRKML---EEFEM---QRMNQEAELLNRRDKMEKELQERTR 569 (1109)
Q Consensus 507 -------E~L~~ekEsF~~~M~hE~s~~~----ek~q~Er~d~l---~d~Em---qkreLe~~~~~r~Ee~E~~L~EREk 569 (1109)
..|+.++=.|....++|+--+- .||..--++-+ ..++- -+-+|||-++..||-+=+.|--|.-
T Consensus 132 n~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmd 211 (552)
T KOG2129|consen 132 NPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMD 211 (552)
T ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4556666667777666663332 23322222211 12232 3346888899999999999999988
Q ss_pred HHHHHHH
Q 001278 570 TFEEKRE 576 (1109)
Q Consensus 570 ~FEeek~ 576 (1109)
.++.++.
T Consensus 212 kLe~ekr 218 (552)
T KOG2129|consen 212 KLEQEKR 218 (552)
T ss_pred HHHHHHH
Confidence 8888875
No 160
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.18 E-value=5e+02 Score=25.20 Aligned_cols=59 Identities=22% Similarity=0.470 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 001278 417 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKK 479 (1109)
Q Consensus 417 ~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~ 479 (1109)
|..|+++.++=||++ .+|.-|+++||.+......|-..+-.-|..|..+...+..++-.
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456788888888886 56778888888776666666555555555555555555444433
No 161
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=31.12 E-value=1.4e+02 Score=32.93 Aligned_cols=71 Identities=23% Similarity=0.450 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHHHHHHHH
Q 001278 572 EEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKER 651 (1109)
Q Consensus 572 Eeek~~EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~~~eRe~ 651 (1109)
+.+-.+++..+-+.-..+.++|.++..|.+.|+.||+.+..+|+....+..+--.. ..-.|-+|..+...
T Consensus 33 e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~----------~e~~r~~fekekqq 102 (228)
T PRK06800 33 EEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKE----------IEAARQQFQKEQQE 102 (228)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 33445566666666677777888888888888888877777776655544333222 33455555555554
Q ss_pred H
Q 001278 652 F 652 (1109)
Q Consensus 652 f 652 (1109)
.
T Consensus 103 ~ 103 (228)
T PRK06800 103 T 103 (228)
T ss_pred H
Confidence 3
No 162
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=30.96 E-value=1.6e+03 Score=31.05 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 547 MNQEAELLNRRDKMEKELQERTRT-FEEKRERVL-NDIAHLKEVAEGEIQEIKSERDQLEK 605 (1109)
Q Consensus 547 reLe~~~~~r~Ee~E~~L~EREk~-FEeek~~EL-~~In~lke~a~~E~E~v~~E~~rLek 605 (1109)
-.|=..|....++.+..|.||++. ||+=--.++ .+|...--.|+.=+..|+-.|..+..
T Consensus 1085 ~~l~~~l~~~i~~~~~ll~e~er~l~E~~L~~~v~~~l~~ri~~A~~~v~~mN~~l~~~~~ 1145 (1353)
T TIGR02680 1085 AGLLARLEQEIAQRRELLTARERELLENHLQGEIARHLQSLILAAERQVAAMNTELAKRPT 1145 (1353)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356778888889999999999986 565444443 45666666677777777777777665
No 163
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=30.09 E-value=7e+02 Score=26.54 Aligned_cols=69 Identities=25% Similarity=0.435 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-------HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001278 318 HREEKLERREQALDKKSDRVKEKENDLAARLKS-------VKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIE 390 (1109)
Q Consensus 318 h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~-------LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~ 390 (1109)
..|+.+....++|..+...|.+--+-|..+++. |.+.+-.|+..-+.+. ..+++-|..++.-+++.+
T Consensus 82 ~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~------er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 82 ELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH------ERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444 4444444444443333 345666777887777776
Q ss_pred hH
Q 001278 391 SE 392 (1109)
Q Consensus 391 a~ 392 (1109)
..
T Consensus 156 ~~ 157 (158)
T PF09744_consen 156 DE 157 (158)
T ss_pred hc
Confidence 54
No 164
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.83 E-value=7.5e+02 Score=29.40 Aligned_cols=113 Identities=23% Similarity=0.325 Sum_probs=69.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 001278 291 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQ 370 (1109)
Q Consensus 291 lE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~ 370 (1109)
|.+-++++...+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=.....+++.++++=+... ..+.....
T Consensus 225 m~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s---~~V~~~t~ 301 (359)
T PF10498_consen 225 MKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQAS---EGVSERTR 301 (359)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHH
Confidence 455567778888888888888889999999999999999999988887765555555555555443333 23333333
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHhh
Q 001278 371 KLIADKESLQILKVEIDQIESENAQQ--ELQIQEECQK 406 (1109)
Q Consensus 371 ~L~~dkeel~~lK~elEK~~a~~e~q--~~qi~ee~e~ 406 (1109)
.|-.=-++|...|.+++.=-+++.+. +-+|.++..+
T Consensus 302 ~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~k 339 (359)
T PF10498_consen 302 ELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTK 339 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 33333444444455544443333322 3344444433
No 165
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=29.26 E-value=1.2e+03 Score=29.09 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=33.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 001278 354 REKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENA 394 (1109)
Q Consensus 354 kEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e 394 (1109)
-++.|+....-|..-+++|+.-+.+-..|.+++.|+++..-
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv 428 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYV 428 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 46777777888888888898888888899999999988654
No 166
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=28.36 E-value=8.7e+02 Score=27.14 Aligned_cols=153 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred hHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHH
Q 001278 88 DANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWE 167 (1109)
Q Consensus 88 eA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~ewe 167 (1109)
.|-+=|++|..+..-++.-+-.|+-.++.+.-|..+++-.--+-+---..|.-.-.-..-..++.+..+..-+.--.+-.
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~ad 80 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKAD 80 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001278 168 KKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTV 247 (1109)
Q Consensus 168 KkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~L 247 (1109)
+|.. +--+.|..++-+||.+....+..-+...+.+.++.+-=.+|-.=+..-+.....+
T Consensus 81 rK~e---------------------EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~ 139 (205)
T KOG1003|consen 81 RKYE---------------------EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKE 139 (205)
T ss_pred HHHH---------------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhH
Q ss_pred HhhHHhHHHHHHHH
Q 001278 248 EMKEKRLLTIEEKL 261 (1109)
Q Consensus 248 e~KEkeLl~leEKL 261 (1109)
+.-+..|..+-+||
T Consensus 140 d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 140 EKYEEELKELTDKL 153 (205)
T ss_pred HHHHHHHHHHHHHH
No 167
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.29 E-value=4.4e+02 Score=28.96 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=38.7
Q ss_pred hhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHH
Q 001278 175 ERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINS 228 (1109)
Q Consensus 175 erL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~ 228 (1109)
++..+.|..+++++..+++-.....+..++|..++.+++.....+....+++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666777777777766677777888888888888777777666666543
No 168
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=28.26 E-value=2.9e+02 Score=31.01 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=12.4
Q ss_pred HHHhhccccchhhhhH
Q 001278 655 FVEKHTSCKNCGEMMR 670 (1109)
Q Consensus 655 ~vEk~K~ckncg~~~~ 670 (1109)
+-.++.+|.-||-+++
T Consensus 186 ~~qkl~VCeVCGA~Ls 201 (254)
T PF03194_consen 186 QQQKLEVCEVCGAFLS 201 (254)
T ss_pred cccCccchhhhhhHHh
Confidence 4467899999996654
No 169
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.65 E-value=1.4e+03 Score=29.19 Aligned_cols=88 Identities=27% Similarity=0.340 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 360 AEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLL 439 (1109)
Q Consensus 360 aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~Ll 439 (1109)
..++.|+.-+..+..--++++.++...-.++..++.| .|+-++=..+..=--+|+++++++-.+...|+
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-----------~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-----------GISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444 34444444444444578889999999999999
Q ss_pred HHHhHHHHHHHHHHHHHhh
Q 001278 440 KEHEDLQQDREKFEKEWEV 458 (1109)
Q Consensus 440 kEae~Lk~eKekFE~EWE~ 458 (1109)
+++=+++-+-+.|=++-+.
T Consensus 360 k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 360 KEVWELKLEIEDFFKELEK 378 (581)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 9998888888877665443
No 170
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.54 E-value=5.1e+02 Score=24.17 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001278 518 ATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEK 562 (1109)
Q Consensus 518 ~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~ 562 (1109)
+.+..+=..+...+...+..|+..|+-........|......++.
T Consensus 42 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 42 AQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444433
No 171
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=26.82 E-value=8.5e+02 Score=26.47 Aligned_cols=117 Identities=17% Similarity=0.262 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-ccHHHHHHHHHHHHH---HHHHHHHHH
Q 001278 357 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK-INEEEKSELLRLQSQ---LKQQIETYR 432 (1109)
Q Consensus 357 sL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk-iteeEr~E~lrLqse---LKeEId~~R 432 (1109)
.+....|.++..-..+++++. .....++|++...+.-..++...+.+.. ++.. +.-.++.+ ...++...+
T Consensus 97 ~~~~~rK~~~~~~~k~~k~~~---~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~k---e~eK~~~k~~k~~~~~~~~~ 170 (236)
T cd07651 97 SYTQKRKKIQSHMEKLLKKKQ---DQEKYLEKAREKYEADCSKINSYTLQSQLTWGK---ELEKNNAKLNKAQSSINSSR 170 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcc---hHHHHHHHHHHHHHHHHHHH
Confidence 344444445444444444433 3345677777777666666554443321 1111 22333333 445566666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q 001278 433 HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV 502 (1109)
Q Consensus 433 ~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~ 502 (1109)
..-.....+.... +..|+.+|.. .+..|+.-|++||.-=+..|..|.
T Consensus 171 ~~Y~~~v~~~~~~---~~~~~~~~~~--------------------~~~~~Q~lEe~Ri~~lk~~l~~~a 217 (236)
T cd07651 171 RDYQNAVKALREL---NEIWNREWKA--------------------ALDDFQDLEEERIQFLKSNCWTFA 217 (236)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555 3468888854 467788888888877777777654
No 172
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.75 E-value=1.4e+03 Score=30.11 Aligned_cols=97 Identities=19% Similarity=0.287 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 001278 447 QDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLV 526 (1109)
Q Consensus 447 ~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~ 526 (1109)
.|..--.+.-|+|--|.++|-|..+...+|..+|.+.++.=...|+. .+.+|.-+...|+++=++-+.+|++=+..
T Consensus 441 ~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q~k 516 (861)
T PF15254_consen 441 NQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQFK 516 (861)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333445556777788888888888888888887776655544443 34566667777888888888888864433
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH
Q 001278 527 LSEKAKNDRRKMLEEFEMQRMNQE 550 (1109)
Q Consensus 527 ~~ek~q~Er~d~l~d~EmqkreLe 550 (1109)
| ...|...++..|.++-|+-|
T Consensus 517 L---e~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 517 L---EASEKENQILGITLRQRDAE 537 (861)
T ss_pred H---HHHHhhhhHhhhHHHHHHHH
Confidence 3 34566666666666655433
No 173
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.52 E-value=8.8e+02 Score=26.56 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 494 EECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 542 (1109)
Q Consensus 494 Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~ 542 (1109)
.-...++.|+.-++.|..-+..|+..|.. =...|..+..+|-+|++++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999985 3444556666777777654
No 174
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.17 E-value=1.7e+03 Score=29.40 Aligned_cols=142 Identities=19% Similarity=0.293 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 001278 416 ELLRLQSQLKQQIETYRHQQELLLK--EHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 493 (1109)
Q Consensus 416 E~lrLqseLKeEId~~R~Qke~Llk--Eae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~ 493 (1109)
+|...|-.||++--........|.+ --|-|||-++..+.|-.++| -..+..+...++..++.--..-|.
T Consensus 879 d~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~e---------kdFv~kqqq~le~~lkrm~~~~k~ 949 (1187)
T KOG0579|consen 879 DMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKE---------KDFVMKQQQNLEAMLKRMAEKHKE 949 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777776655544444433 34678888888888876653 456777777888777777777777
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001278 494 EECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT 568 (1109)
Q Consensus 494 Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~r~Ee~E~~L~ERE 568 (1109)
+..++..++-.+--.|-++||.-.=. -|-.-+.+|-|--+.+|-...=|||+.|-..-++..+.|++|-+.-.
T Consensus 950 ema~iErecLm~Kq~LlRarEaaiWE--lEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~i 1022 (1187)
T KOG0579|consen 950 EMASIERECLMQKQNLLRAREAAIWE--LEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQREI 1022 (1187)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666677777754443 44556788999999999999999999999999999999999977543
No 175
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.98 E-value=9.1e+02 Score=26.59 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhHH
Q 001278 379 LQILKVEIDQIESEN 393 (1109)
Q Consensus 379 l~~lK~elEK~~a~~ 393 (1109)
+..++.+++.+.+.+
T Consensus 148 l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 148 LIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 176
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.76 E-value=1e+03 Score=26.83 Aligned_cols=143 Identities=26% Similarity=0.304 Sum_probs=87.5
Q ss_pred cchhhHHhHhhhhhcc--hhhHHhhhhhhHHHHHHhh---c-----cchHHHhHHHHhhhhHHHHHHHHhhhhh------
Q 001278 84 KTLTDANTLLGGIEGK--SLEVEEKFHAAEAKLAEVN---R-----KSSELEMKLQELESRESVIKRERLSLVT------ 147 (1109)
Q Consensus 84 sKlaeA~aLv~~~eeK--slEvE~Kl~aAeaklAEa~---R-----k~s~~eRkL~evEaRE~~LrRerlSf~~------ 147 (1109)
+|++.|.++= +=++| ..+++.+|--|+..+..+- | .++-..-||++--+=-..|+++.-+-.+
T Consensus 21 ~k~~~~~~~~-~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~ 99 (220)
T KOG1666|consen 21 KKIGRALSLP-GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAG 99 (220)
T ss_pred HhHHHHhcCC-chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4555555544 33333 4455555555555544321 1 1444555555555444455554433331
Q ss_pred H----HHhHHHH----HHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhh
Q 001278 148 E----REAHEAA----FYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKL 219 (1109)
Q Consensus 148 E----rea~E~~----~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~L 219 (1109)
. .++..+. ..-||.-|-.=-..|...-+||.+++|+.+. .+++=...=.+|-.-...|+.++..|
T Consensus 100 ~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~E-------TEqIG~~IL~dL~~QRe~L~rar~rL 172 (220)
T KOG1666|consen 100 DRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALE-------TEQIGSEILEDLHGQREQLERARERL 172 (220)
T ss_pred hHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233333 6789999999999999999999999998764 44555555567777788889999999
Q ss_pred HhhHHHHHHHHHHHH
Q 001278 220 KEREDEINSRLAELV 234 (1109)
Q Consensus 220 k~keddi~~rl~~L~ 234 (1109)
.+-.+++..-...|+
T Consensus 173 ~~td~~lgkS~kiL~ 187 (220)
T KOG1666|consen 173 RETDANLGKSRKILT 187 (220)
T ss_pred HhchhhhhHHHHHHH
Confidence 888888765544443
No 177
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.73 E-value=7.7e+02 Score=27.69 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=16.2
Q ss_pred hHHHHhHHHHHHHHHHHHH
Q 001278 486 SAEERLKKEECAMRDYVQR 504 (1109)
Q Consensus 486 ~E~erLK~Ek~~~r~~~kr 504 (1109)
.|.|||..+-..+++++..
T Consensus 193 ~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 193 DEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 7899999998999988754
No 178
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.62 E-value=9.3e+02 Score=26.19 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHH
Q 001278 63 DLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRER 142 (1109)
Q Consensus 63 dLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRer 142 (1109)
.=|+|+.+|..=|-.| ...=.+||.++.+...+.-.+....+-.++++..-...+---|+..+.--..|++..
T Consensus 6 ~He~af~~iK~YYndI-------T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 6 NHEKAFQEIKNYYNDI-------TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3478888887776554 234568888998888888888888888888888888888888888887778888887
Q ss_pred hhhhhHHHhHH
Q 001278 143 LSLVTEREAHE 153 (1109)
Q Consensus 143 lSf~~Erea~E 153 (1109)
-.|..+.-++.
T Consensus 79 ~~y~kdK~~L~ 89 (201)
T PF13851_consen 79 KNYEKDKQSLQ 89 (201)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 179
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=24.47 E-value=25 Score=43.92 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcHHHHH
Q 001278 501 YVQREIEAIRLDKEAFE 517 (1109)
Q Consensus 501 ~~krelE~L~~ekEsF~ 517 (1109)
+|++.+..|.-.-..||
T Consensus 329 ~lk~qvk~Lee~N~~l~ 345 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLL 345 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555544433333
No 180
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.41 E-value=1.2e+03 Score=27.32 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=33.2
Q ss_pred hhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchH
Q 001278 78 TKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSE 123 (1109)
Q Consensus 78 iK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~ 123 (1109)
+....+-|...+..-..-++...-++..+|.+|+..+..--+++.-
T Consensus 158 ~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 158 IDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444566666777777778888888888888888888776666543
No 181
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.96 E-value=1.7e+03 Score=28.92 Aligned_cols=89 Identities=26% Similarity=0.374 Sum_probs=52.0
Q ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhh----HHHH--HHHHHHHHHHH
Q 001278 205 LEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNA----RERV--EIQKLLDDQRA 278 (1109)
Q Consensus 205 LEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a----RE~~--eIQKLldeh~a 278 (1109)
||..=++|.......+..|.++...|..|+.-|. ..+..|.-.-++--.||-||.. |+++ -|+.| .-.=+
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er---~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L-EkrL~ 498 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNER---SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL-EKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5544456667777778889999999998888776 3445555544444455555543 3332 22221 11122
Q ss_pred HHHHhhhHHHHHHHHHhhh
Q 001278 279 ILDAKQQEFELELEEKRKS 297 (1109)
Q Consensus 279 ~L~~Kk~eFElElE~kRKs 297 (1109)
.....+..+|.+|...||.
T Consensus 499 eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 499 EERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334466777777766654
No 182
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=23.92 E-value=1.9e+03 Score=29.53 Aligned_cols=233 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 354 REKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRH 433 (1109)
Q Consensus 354 kEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~ 433 (1109)
++-.+.-.-..++..+.+|.+++++.+.+-.-.+.-...++-+..+...+.++-..-.+ +|+.|...+++
T Consensus 331 ~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e----------qLr~elaql~a 400 (980)
T KOG0980|consen 331 RELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE----------QLRNELAQLLA 400 (980)
T ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHH
Q ss_pred HHHHHHHHH---hHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhh
Q 001278 434 QQELLLKEH---EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIR 510 (1109)
Q Consensus 434 Qke~LlkEa---e~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~ 510 (1109)
....+.+=- +++...----+.-++-+-+|-++|.-+=..+-..-.-+-+-+-+.+..+- +...........++.+.
T Consensus 401 ~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~-~~~~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 401 SRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID-DVEEENTNLNDQLEELQ 479 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHH
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001278 511 LDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL---NRRDKMEKELQERTRTFEEKRERVLNDIAHLKE 587 (1109)
Q Consensus 511 ~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~---~r~Ee~E~~L~EREk~FEeek~~EL~~In~lke 587 (1109)
.+..-...+-+ +.....+.+.+|.+-++..|+-+.+++.+..+ +...+++-.|..|-+.|.+...++++.=+ ++-
T Consensus 480 ~~~~~~~~K~e-~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~-~~~ 557 (980)
T KOG0980|consen 480 RAAGRAETKTE-SQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREA-LRL 557 (980)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHH
Q ss_pred HHHHHHHHHHHH
Q 001278 588 VAEGEIQEIKSE 599 (1109)
Q Consensus 588 ~a~~E~E~v~~E 599 (1109)
-+++=+.+..+.
T Consensus 558 e~e~si~ql~l~ 569 (980)
T KOG0980|consen 558 EAERSINQLELD 569 (980)
T ss_pred HHHhhHHHhhcc
No 183
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=23.88 E-value=79 Score=39.10 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHH
Q 001278 580 NDIAHLKEVAEGEIQE---IKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF 645 (1109)
Q Consensus 580 ~~In~lke~a~~E~E~---v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~ 645 (1109)
..|+.||+.++-=+.+ -++.+.||=+-+..|...+.+ |-.|..|-.+|..+--.+
T Consensus 61 ~eI~~LK~~~q~s~d~y~kYKLKLeR~~~Kk~ki~~sk~~-----------ik~lt~lK~~L~~r~n~l 118 (574)
T PF07462_consen 61 EEIEELKKKIQVSLDHYGKYKLKLERLLKKKNKISNSKEQ-----------IKKLTILKNKLERRQNLL 118 (574)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh
Confidence 3466666655544433 344455555555555544443 556666666666544433
No 184
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.46 E-value=8.5e+02 Score=25.32 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001278 417 LLRLQSQLKQQIETYRHQ 434 (1109)
Q Consensus 417 ~lrLqseLKeEId~~R~Q 434 (1109)
+......+..++..++..
T Consensus 100 l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 100 LQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 185
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.53 E-value=6.9e+02 Score=23.96 Aligned_cols=65 Identities=28% Similarity=0.498 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 001278 417 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 496 (1109)
Q Consensus 417 ~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~ 496 (1109)
|-.|+.+.++-||++- +|.-|+++|| ||...|+.|.-.....|++|+ .|-+.||+|-.
T Consensus 6 ~ekLE~KiqqAvdTI~----LLQmEieELK--------------Eknn~l~~e~q~~q~~reaL~----~eneqlk~e~~ 63 (79)
T COG3074 6 FEKLEAKVQQAIDTIT----LLQMEIEELK--------------EKNNSLSQEVQNAQHQREALE----RENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHH--------------HHhhHhHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3467888999999874 4555666554 677778888888888888776 46677777776
Q ss_pred HHHHHHH
Q 001278 497 AMRDYVQ 503 (1109)
Q Consensus 497 ~~r~~~k 503 (1109)
+-++.+.
T Consensus 64 ~WQerlr 70 (79)
T COG3074 64 GWQERLR 70 (79)
T ss_pred HHHHHHH
Confidence 6665554
No 186
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=22.29 E-value=8.7e+02 Score=25.02 Aligned_cols=51 Identities=25% Similarity=0.233 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 001278 357 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 409 (1109)
Q Consensus 357 sL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 409 (1109)
.+...-+.|+..+..|..+ ....++.+++-++.=|.++-.++..-+.+|+.
T Consensus 59 ~~~~~~~~l~~~~~kl~~E--~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 59 ELASEVKELEAEKEKLKEE--ARKEAQSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333334444444444322 22445666777777777777777776666654
No 187
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.79 E-value=5.5e+02 Score=27.08 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001278 421 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 456 (1109)
Q Consensus 421 qseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 456 (1109)
..++++||+++..+-....++.+.||.|-+.+.+|.
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777777777778888999999998888875
No 188
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.74 E-value=1.1e+03 Score=26.17 Aligned_cols=30 Identities=30% Similarity=0.570 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001278 423 QLKQQIETYRHQQELLLKEHEDLQQDREKFEKE 455 (1109)
Q Consensus 423 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 455 (1109)
.|..+++.+|+ +|..|......+...|+.|
T Consensus 135 ~l~~e~erL~a---eL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 135 SLRREVERLRA---ELQRERQRREEQRSSFEQE 164 (202)
T ss_pred hHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 35556666654 3455555556666677765
No 189
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.70 E-value=1.7e+03 Score=28.33 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHH
Q 001278 374 ADKESLQILKVEIDQIESENAQ 395 (1109)
Q Consensus 374 ~dkeel~~lK~elEK~~a~~e~ 395 (1109)
..++....|+.|+.|..+.+.+
T Consensus 263 slre~~~~L~~D~nK~~~y~~~ 284 (581)
T KOG0995|consen 263 SLREKKARLQDDVNKFQAYVSQ 284 (581)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3334444444444444444433
No 190
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=21.54 E-value=76 Score=29.23 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=21.7
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCCcCCCCccccc
Q 001278 1064 VNGTSEYVDEDENGGRVLEDEEDDDDDSDHPGEASIG 1100 (1109)
Q Consensus 1064 vNgtPe~~~e~~~~ge~~~ddddDedE~ehPGevSIG 1100 (1109)
|-|.|-|+++. +-.-|+|+++||...|+.-||-
T Consensus 19 vQ~APQYa~Ge----eP~YDEdd~dde~l~phsss~~ 51 (65)
T PF10731_consen 19 VQSAPQYAPGE----EPSYDEDDDDDEPLKPHSSSIT 51 (65)
T ss_pred HhcCcccCCCC----CCCcCcccCcccccccCCCCCC
Confidence 34677777632 1112677778888888888874
No 191
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.21 E-value=1e+03 Score=27.53 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001278 321 EKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 400 (1109)
Q Consensus 321 ekl~krEqaLe~k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi 400 (1109)
..|..-...|..+--.|.++.++.+..+..+...-............+...+.....++...+.+++.-++...-.+...
T Consensus 15 ~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~A 94 (344)
T PF12777_consen 15 EQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEEA 94 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443221111111222233334444455556666666666666655555555
Q ss_pred HHHHhhh
Q 001278 401 QEECQKL 407 (1109)
Q Consensus 401 ~ee~e~L 407 (1109)
..+-.+|
T Consensus 95 ~~al~~l 101 (344)
T PF12777_consen 95 QEALKSL 101 (344)
T ss_dssp HHHHHCS
T ss_pred HHHHHhC
Confidence 5554444
No 192
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.05 E-value=1.8e+03 Score=28.24 Aligned_cols=251 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHH------------HHHHHHHH
Q 001278 265 ERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLE------------RREQALDK 332 (1109)
Q Consensus 265 E~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~------------krEqaLe~ 332 (1109)
||+.--.=|.+..+.+.-|.+..-.++...++.-+..+.. +...|..|......+. ..|++|..
T Consensus 12 Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~----V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~ 87 (617)
T PF15070_consen 12 ERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISR----VQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQA 87 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcccCCccccccchHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHH
Q 001278 333 KSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEE 412 (1109)
Q Consensus 333 k~~~lkeKEkdl~~k~k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lkitee 412 (1109)
..+.|..--..|.+++.+.-+--..|...-...+.....|...-+.+..-..|..++++.+...+.-|.-+-..=+
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~---- 163 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR---- 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 001278 413 EKSELLRLQSQLKQQIETYRHQQELLLKEH--------------EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 478 (1109)
Q Consensus 413 Er~E~lrLqseLKeEId~~R~Qke~LlkEa--------------e~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre 478 (1109)
+||+++..+----..|..+- ..|...-...+-.|..+-++=+.-..|+..+..++.
T Consensus 164 ----------eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~d 233 (617)
T PF15070_consen 164 ----------ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRD 233 (617)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001278 479 KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ 549 (1109)
Q Consensus 479 ~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreL 549 (1109)
.+..++ .+|......|..+++..-.-+-. +.-+..++|.+-++-.-.+||+..+|
T Consensus 234 q~~~~L---------------qqy~a~~q~l~~e~e~L~~q~l~-Qtql~d~lq~eE~q~~~~~E~~~~EL 288 (617)
T PF15070_consen 234 QYLGHL---------------QQYVAAYQQLASEKEELHKQLLQ-QTQLMDRLQHEESQGKVQLEMAHQEL 288 (617)
T ss_pred HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHH
No 193
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=20.68 E-value=1e+03 Score=25.29 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=28.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001278 487 AEERLKKEECAMRDYVQREIEAIRLDKEAF---EATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLN 555 (1109)
Q Consensus 487 E~erLK~Ek~~~r~~~krelE~L~~ekEsF---~~~M~hE~s~~~ek~q~Er~d~l~d~EmqkreLe~~~~~ 555 (1109)
|.++|+.....+..+|.++-+.-+.....| .+....|+..|..++ ..++.+.+.|+..+.+
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v--------~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQV--------EQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhh
Confidence 445555555555555555443332222222 233333333333333 3455556666655554
No 194
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.54 E-value=6.9e+02 Score=31.29 Aligned_cols=94 Identities=22% Similarity=0.351 Sum_probs=56.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 001278 349 KSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI 428 (1109)
Q Consensus 349 k~LKEkEksL~aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEI 428 (1109)
...++-++.++..+........+|- .++++..||..++++...-=+--..|. .-..++-.|+.+.+...
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~----------~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQ----------KIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666665 477777777777776652111111111 11235666777777777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001278 429 ETYRHQQELLLKEHEDLQQDREKFE 453 (1109)
Q Consensus 429 d~~R~Qke~LlkEae~Lk~eKekFE 453 (1109)
+.++.=+..|..+.+.++++-..++
T Consensus 233 ~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 233 QKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7777777777777777777666554
Done!