Query 001278
Match_columns 1109
No_of_seqs 39 out of 41
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 19:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.9 2.3E-05 7.8E-10 97.6 10.7 42 617-658 1121-1162(1184)
2 1i84_S Smooth muscle myosin he 97.8 5.3E-05 1.8E-09 94.4 10.5 35 488-523 1146-1180(1184)
3 1c1g_A Tropomyosin; contractIl 97.6 0.067 2.3E-06 52.6 40.3 13 451-463 220-232 (284)
4 3vkg_A Dynein heavy chain, cyt 94.6 7.1 0.00024 54.3 28.6 192 272-464 1900-2101(3245)
5 2dfs_A Myosin-5A; myosin-V, in 94.2 0.91 3.1E-05 57.0 17.9 92 422-537 987-1078(1080)
6 3na7_A HP0958; flagellar bioge 93.4 3.5 0.00012 43.4 18.1 54 124-177 30-83 (256)
7 3vkg_A Dynein heavy chain, cyt 92.2 22 0.00076 49.7 27.3 66 441-506 2036-2104(3245)
8 3na7_A HP0958; flagellar bioge 91.7 15 0.00051 38.7 22.2 90 426-533 97-186 (256)
9 2dfs_A Myosin-5A; myosin-V, in 91.0 8.8 0.0003 48.4 20.3 29 422-450 1019-1047(1080)
10 3oja_B Anopheles plasmodium-re 85.8 11 0.00037 42.9 15.1 70 377-449 463-532 (597)
11 2efr_A General control protein 85.0 35 0.0012 34.5 16.9 135 62-235 3-137 (155)
12 2b9c_A Striated-muscle alpha t 81.2 20 0.00068 35.7 12.9 123 95-245 7-132 (147)
13 2efr_A General control protein 75.3 73 0.0025 32.2 18.1 74 185-261 69-142 (155)
14 3oja_A Leucine-rich immune mol 72.3 57 0.002 36.5 15.0 11 285-295 324-334 (487)
15 2v71_A Nuclear distribution pr 71.9 99 0.0034 32.2 17.6 74 365-449 93-177 (189)
16 3q8t_A Beclin-1; autophagy, AT 66.1 34 0.0012 31.8 9.6 62 593-654 6-67 (96)
17 3oja_A Leucine-rich immune mol 62.4 1.1E+02 0.0039 34.1 14.8 54 578-638 429-482 (487)
18 3hnw_A Uncharacterized protein 59.6 56 0.0019 32.1 10.3 59 423-481 72-130 (138)
19 3ghg_A Fibrinogen alpha chain; 58.2 93 0.0032 36.9 13.3 71 268-338 50-123 (562)
20 2eqb_B RAB guanine nucleotide 52.2 94 0.0032 29.5 9.9 94 11-118 3-96 (97)
21 2fxo_A Myosin heavy chain, car 51.8 1.7E+02 0.0058 28.1 17.7 40 422-461 79-118 (129)
22 3nmd_A CGMP dependent protein 46.2 41 0.0014 30.4 6.3 49 215-263 17-65 (72)
23 3tnu_B Keratin, type II cytosk 45.0 1.7E+02 0.0059 27.9 10.9 121 160-299 6-127 (129)
24 3mq9_A Bone marrow stromal ant 38.8 85 0.0029 34.9 8.9 96 64-160 371-470 (471)
25 3tnu_A Keratin, type I cytoske 37.3 2.4E+02 0.0081 27.1 10.6 34 266-300 97-130 (131)
26 1m1j_B Fibrinogen beta chain; 32.8 1.4E+02 0.0048 34.8 9.6 77 160-236 99-190 (464)
27 3ghg_A Fibrinogen alpha chain; 31.7 2.4E+02 0.0082 33.6 11.1 10 928-937 395-404 (562)
28 3q8t_A Beclin-1; autophagy, AT 30.0 3.4E+02 0.012 25.2 12.8 40 436-475 14-53 (96)
29 2jee_A YIIU; FTSZ, septum, coi 28.4 3.2E+02 0.011 25.2 9.2 56 398-453 13-68 (81)
30 2v71_A Nuclear distribution pr 26.3 5.7E+02 0.02 26.6 15.2 112 123-244 46-157 (189)
31 3oc5_A Toxin coregulated pilus 25.0 17 0.00058 39.3 0.4 16 1093-1108 258-273 (318)
32 3bas_A Myosin heavy chain, str 24.5 4E+02 0.014 24.2 9.6 40 360-399 35-74 (89)
33 3hnw_A Uncharacterized protein 24.2 3.8E+02 0.013 26.4 9.6 11 342-352 35-45 (138)
34 3nmd_A CGMP dependent protein 22.0 1.2E+02 0.0041 27.4 5.1 36 184-219 35-70 (72)
35 3teq_A Stromal interaction mol 20.9 58 0.002 31.0 3.0 42 78-119 22-78 (101)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.92 E-value=2.3e-05 Score=97.60 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHhhhhhcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 001278 617 LQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 658 (1109)
Q Consensus 617 le~q~~em~kdIdeL~~ls~KLk~qRE~~~~eRe~fl~~vEk 658 (1109)
++.+...+...+++......+|..++..+..+...+...|+.
T Consensus 1121 Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444443333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.77 E-value=5.3e-05 Score=94.35 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 001278 488 EERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHE 523 (1109)
Q Consensus 488 ~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE 523 (1109)
...|..+...++..+.. +.......-+...+|+.|
T Consensus 1146 ~~~L~~ele~L~~~Iee-l~~vn~aq~el~~~~e~~ 1180 (1184)
T 1i84_S 1146 KRDLSEELEALKTELED-TLDTTATQQELRGSDYKD 1180 (1184)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhhhccc
Confidence 34555555555555442 333444444455555443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.59 E-value=0.067 Score=52.56 Aligned_cols=13 Identities=46% Similarity=0.710 Sum_probs=4.6
Q ss_pred HHHHHHhhhHHhH
Q 001278 451 KFEKEWEVLDEKR 463 (1109)
Q Consensus 451 kFE~EWE~LDEKR 463 (1109)
.++.++..+....
T Consensus 220 ~~~~~l~~l~~~~ 232 (284)
T 1c1g_A 220 KYEEEIKVLSDKL 232 (284)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.59 E-value=7.1 Score=54.32 Aligned_cols=192 Identities=14% Similarity=0.282 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Q 001278 272 LLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSV 351 (1109)
Q Consensus 272 Lldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lkeKEkdl~~k~k~L 351 (1109)
||.-+...|..|+.++.....-...=|+ -|..-...|..-.+++...+-.|.+...+-+..+..+......-+.+-...
T Consensus 1900 li~~y~~ll~~K~~el~~~~~rl~~GL~-KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1900 FINQVVLLINEKRDQLEEEQLHLNIGLK-KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555565555555444333322222 122223334444444444444444444444444444444333333333333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 001278 352 KEREKFVKAEEKKLELEKQKLIAD----------KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQ 421 (1109)
Q Consensus 352 KEkEksL~aeEK~le~ek~~L~~d----------keel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLq 421 (1109)
.+.++.+....+++...+...++| |+.+..+..++.+..+.+.+...++.+-.++|...+++=.+...=.
T Consensus 1979 ~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek 2058 (3245)
T 3vkg_A 1979 RELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333 1223333333333333333333333333334444444433333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHH
Q 001278 422 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRD 464 (1109)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~ 464 (1109)
..|+.+++.|.....--.+=..-|-.|+.|....=..|+....
T Consensus 2059 ~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2059 EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 4444444444433333333333444444444444444444333
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.24 E-value=0.91 Score=56.99 Aligned_cols=92 Identities=16% Similarity=0.282 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 001278 422 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 501 (1109)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 501 (1109)
..|.++|+.++.+-..+.+|-+.|++....... .|.+|-..|++ |-..|++..+++...
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~------------------e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKE------------------QNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 345555555555555555555555444433331 22233333333 444455555555544
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 502 VQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK 537 (1109)
Q Consensus 502 ~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Er~d 537 (1109)
+...-+.+. +.+-..|++++..+..-...||+.
T Consensus 1046 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1046 IHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444333 456666666666666666666653
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.45 E-value=3.5 Score=43.45 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhh
Q 001278 124 LEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERL 177 (1109)
Q Consensus 124 ~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL 177 (1109)
+-..+.++++.-..|+.....+.++.+..+..+..-..++.+-..++...+.+|
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555544444444444444444444433
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.20 E-value=22 Score=49.71 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH---HHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Q 001278 441 EHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEK---KKLEKLQHSAEERLKKEECAMRDYVQREI 506 (1109)
Q Consensus 441 Eae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEr---e~lek~~~~E~erLK~Ek~~~r~~~krel 506 (1109)
+..+|....+....+++..-.+++.|+.+++....-= ++|-.=+.+|..|=...-..+..++..=.
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhcc
Confidence 3333333334444444444444455555544332221 12333355677777766666666655533
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.71 E-value=15 Score=38.69 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 001278 426 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 505 (1109)
Q Consensus 426 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 505 (1109)
.||+....+...|..+.-++-...+..+.+++.+....+.++.+ .+.++.+.++.-..+..+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~------------------l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL------------------ALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444444444444444333333322 233444555555666777
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 001278 506 IEAIRLDKEAFEATMRHEQLVLSEKAKN 533 (1109)
Q Consensus 506 lE~L~~ekEsF~~~M~hE~s~~~ek~q~ 533 (1109)
+..|.-.|+.|...|...=...+++|..
T Consensus 159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 159 QQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7788888888888888666666666543
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.02 E-value=8.8 Score=48.40 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001278 422 SQLKQQIETYRHQQELLLKEHEDLQQDRE 450 (1109)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~Lk~eKe 450 (1109)
..|.+.|..+..+...|....|+|.....
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455443333
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.81 E-value=11 Score=42.95 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001278 377 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR 449 (1109)
Q Consensus 377 eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eK 449 (1109)
.++..++.++....+.+.....+|....+.+.+.+++..+. ...|++++.+.+.....+..+...++++.
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS---SDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCH---HHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 55666666666666677777777777777776655443332 24455555555555554444444444443
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=85.01 E-value=35 Score=34.49 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHH
Q 001278 62 ADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRE 141 (1109)
Q Consensus 62 adLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRe 141 (1109)
..||.-|++. ++-|..|+ .++.. ++.-+..+|.++.+|+++..+.---...+...|+.+++++..-.-.
T Consensus 3 ~~lE~qlkea-ae~ad~Ky------eEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqr 71 (155)
T 2efr_A 3 KQLEDKVEEL-LSKNYHLE------NEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK 71 (155)
T ss_dssp HHHHHHHHHH-HHHHHHHH------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhHHHH------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 4577777777 56555554 35554 6666666777777887776666655556666666666655432110
Q ss_pred HhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHh
Q 001278 142 RLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKE 221 (1109)
Q Consensus 142 rlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~ 221 (1109)
-+.++ +.|-.++..|..=|-|+-...+.+.+.+++++.+.-.|...+...+.
T Consensus 72 -------Ed~yE---------------------eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~ 123 (155)
T 2efr_A 72 -------EDKYE---------------------EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKA 123 (155)
T ss_dssp -------HHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122 22222222333444555555666777888888888888888888888
Q ss_pred hHHHHHHHHHHHHH
Q 001278 222 REDEINSRLAELVV 235 (1109)
Q Consensus 222 keddi~~rl~~L~~ 235 (1109)
..++|...|..|+.
T Consensus 124 i~~eLd~tl~el~~ 137 (155)
T 2efr_A 124 ISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888777765
No 12
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.24 E-value=20 Score=35.73 Aligned_cols=123 Identities=28% Similarity=0.317 Sum_probs=77.8
Q ss_pred hhhcchhhHHhhhhhhHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhh
Q 001278 95 GIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGD 174 (1109)
Q Consensus 95 ~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~e 174 (1109)
-+++-+.-++.+|..|-.+|.+|.-...+.+|..+-+|.|... .+. ++.+.+
T Consensus 7 llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~--------------deE--------------r~~~lE 58 (147)
T 2b9c_A 7 LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQK--------------DEE--------------KMEIQE 58 (147)
T ss_dssp ----CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHH--------------HHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------------cHH--------------HHHHHH
Confidence 3566677788888899999999988888888888888877651 111 122222
Q ss_pred hhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHH---HHHHHHHHHHHHHHHHHhh
Q 001278 175 ERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEI---NSRLAELVVKEREADCLRS 245 (1109)
Q Consensus 175 erL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi---~~rl~~L~~kEke~~~~~~ 245 (1109)
..|-+.+.+...=+.+.-|..+-+...+.+|+.+.-..+.+-...+..+++| .+.|.+|-..+..+..+.-
T Consensus 59 ~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~ 132 (147)
T 2b9c_A 59 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNY 132 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 3333344444444445556666677778888888888888888887777764 4455555555555544443
No 13
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=75.35 E-value=73 Score=32.19 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=34.0
Q ss_pred hhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHH
Q 001278 185 NQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKL 261 (1109)
Q Consensus 185 NqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL 261 (1109)
+||++..-+.-+.| ...|.++....+.+-..+...+-+|..--..|..--.....+...|+.-=.+|..++.++
T Consensus 69 sqrEd~yEeqIk~L---~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~ 142 (155)
T 2efr_A 69 SQKEDKYEEEIKVL---SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKN 142 (155)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 45555544333333 344555555555555555444444333333333333444455555554444444444443
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.28 E-value=57 Score=36.48 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=5.9
Q ss_pred hHHHHHHHHHh
Q 001278 285 QEFELELEEKR 295 (1109)
Q Consensus 285 ~eFElElE~kR 295 (1109)
.+|..|++...
T Consensus 324 ~eF~~Eve~L~ 334 (487)
T 3oja_A 324 ETERLECEREN 334 (487)
T ss_dssp -CHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45666666544
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.89 E-value=99 Score=32.18 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001278 365 LELEKQKLIADKESLQILKVEIDQIESENAQQE-----------LQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRH 433 (1109)
Q Consensus 365 le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~-----------~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~ 433 (1109)
|+.+..+|...++.+....-+||..-+.++.+. .+.+.+.++...+ +++|.+ =+.++.
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alL----------E~El~E-Ke~l~~ 161 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFL----------ESELDE-KESLLV 161 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-HHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----------HHHHHH-HHHHHH
Confidence 334444555555555555555555544444444 4455555544444 444442 333333
Q ss_pred HHHHHHHHHhHHHHHH
Q 001278 434 QQELLLKEHEDLQQDR 449 (1109)
Q Consensus 434 Qke~LlkEae~Lk~eK 449 (1109)
.-.-|.-|+-||+++-
T Consensus 162 ~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 162 SVQRLKDEARDLRQEL 177 (189)
T ss_dssp CC--------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555543
No 16
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=66.10 E-value=34 Score=31.81 Aligned_cols=62 Identities=16% Similarity=0.323 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001278 593 IQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLE 654 (1109)
Q Consensus 593 ~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~~~eRe~fl~ 654 (1109)
++.+..++..|..|-..+...-..++.+.+.+..+|..|...+..|..+-+.|.++++.|-.
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ 67 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKR 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455556666666666666667777777788888888888888888888888888888754
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.43 E-value=1.1e+02 Score=34.06 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=24.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHh
Q 001278 578 VLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL 638 (1109)
Q Consensus 578 EL~~In~lke~a~~E~E~v~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KL 638 (1109)
|.++++..-+....+++++.-|..|++++-.+ ++.+..+++...-.+.++...|
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGE-------ADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhh-------hhhhhHhcccHHHHHHHHHHHH
Confidence 33344444444444444444444444444333 3444445544444444444433
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.58 E-value=56 Score=32.15 Aligned_cols=59 Identities=22% Similarity=0.147 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 001278 423 QLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLE 481 (1109)
Q Consensus 423 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~eEre~le 481 (1109)
+++++++.++.+...+.+|..+||.+....-..-+.+...-++|+++...+..+-..|+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777777666666666666555555555555555554444
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.21 E-value=93 Score=36.92 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH---HHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHH
Q 001278 268 EIQKLLDDQRAILDAKQQEFELEL---EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVK 338 (1109)
Q Consensus 268 eIQKLldeh~a~L~~Kk~eFElEl---E~kRKs~eeel~~K~~~~e~rEvel~h~Eekl~krEqaLe~k~~~lk 338 (1109)
+||-||+.|+--|..+..++=.++ .+.+++.+.=++++...|.++-......+..+.+--.+|+.+...|+
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK 123 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLK 123 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 689999999988887766655444 45666777777777777777666666555555555555554444443
No 20
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.20 E-value=94 Score=29.47 Aligned_cols=94 Identities=14% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHH
Q 001278 11 WTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDAN 90 (1109)
Q Consensus 11 wtSK~eel~qa~~eae~~lKREqaAhl~AlsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~ 90 (1109)
+.+.|+.++..+...+.-++. ++.--.-|...|.-|+.--...|+.+..|..|.-+.-.+- +.+||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~-----------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL---FeEAN 68 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD-----------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL---FDEAN 68 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_pred hHhhhhhcchhhHHhhhhhhHHHHHHhh
Q 001278 91 TLLGGIEGKSLEVEEKFHAAEAKLAEVN 118 (1109)
Q Consensus 91 aLv~~~eeKslEvE~Kl~aAeaklAEa~ 118 (1109)
.||+.+......+|.|...-.+-+++..
T Consensus 69 ~MVa~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 69 NMVADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 21
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=51.83 E-value=1.7e+02 Score=28.08 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 001278 422 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 461 (1109)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 461 (1109)
.+|-..|..+-.+.+........|...|.+++.++..|-.
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555566666666665555543
No 22
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=46.23 E-value=41 Score=30.36 Aligned_cols=49 Identities=14% Similarity=0.319 Sum_probs=42.1
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHhHHHHHHHHhh
Q 001278 215 SSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNA 263 (1109)
Q Consensus 215 ~~~~Lk~keddi~~rl~~L~~kEke~~~~~~~Le~KEkeLl~leEKL~a 263 (1109)
.+.++.+.++.|..|.+.|..++.-+..++..|..|+.++..|+-.|..
T Consensus 17 ~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 17 GRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888899999999999999999999999999999999988877754
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.98 E-value=1.7e+02 Score=27.94 Aligned_cols=121 Identities=15% Similarity=0.288 Sum_probs=52.4
Q ss_pred HhhHHHHH-HhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 001278 160 REDLREWE-KKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKER 238 (1109)
Q Consensus 160 re~L~ewe-KkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEk 238 (1109)
|.++-.|= .|+.+.+......-..|..=...+.+--+.+...+-+|+.++.....--..|.+-+.... -
T Consensus 6 r~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~----------~ 75 (129)
T 3tnu_B 6 RTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE----------L 75 (129)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------H
Confidence 34444443 344443333332222232223335555555655666666554443332223322222211 1
Q ss_pred HHHHHhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHH
Q 001278 239 EADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIE 299 (1109)
Q Consensus 239 e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~e 299 (1109)
++...+..|...|.+|..+ +.+++..+.++..-|+.|. -++.|+..-||.+|
T Consensus 76 ~l~~~q~~i~~lE~eL~~~--------r~e~~~ql~EYq~LlnvKl-~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKA--------KQDMARLLREYQELMNTKL-ALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHC
Confidence 2233333444444444332 5788889999998888875 47888999998875
No 24
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.79 E-value=85 Score=34.93 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhhhhhhccccchhhHHhHhhhhhcchhhHHhhhhhhHHHHHHhhccchHHHhHH----HHhhhhHHHHH
Q 001278 64 LEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKL----QELESRESVIK 139 (1109)
Q Consensus 64 LEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~eRkL----~evEaRE~~Lr 139 (1109)
.+.||.++...+..+ +..-.+-++|..-..-+++++.++...+..+++.-+-|||.--.+.-.| -.-++|=..|.
T Consensus 371 ~eeal~~~~~~i~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (471)
T 3mq9_A 371 VDEALKDAQTRITAA-RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELE 449 (471)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544332 2222344567777788899999999999999988888888744433322 22333333444
Q ss_pred HHHhhhhhHHHhHHHHHHHhH
Q 001278 140 RERLSLVTEREAHEAAFYKQR 160 (1109)
Q Consensus 140 RerlSf~~Erea~E~~~~~qr 160 (1109)
-++..++.+.+..+++|..||
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 450 GEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444443
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.32 E-value=2.4e+02 Score=27.08 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHH
Q 001278 266 RVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEE 300 (1109)
Q Consensus 266 ~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~ee 300 (1109)
+.+++..+.++..-|+.|. -++.|+..-||.++-
T Consensus 97 r~em~~ql~EYq~Ll~vKl-~Ld~EIatYRkLLEG 130 (131)
T 3tnu_A 97 RCEMEQQNQEYKILLDVKT-RLEQEIATYRRLLEG 130 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHCc
Confidence 5678888999998888875 578899999988763
No 26
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.80 E-value=1.4e+02 Score=34.78 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HhhHHHHHHhhchhhhhhHH-------HHHhhhhhhhhhhhhHHHHHHhhhhHHHHHhhhh--------hhhhhhHhhHH
Q 001278 160 REDLREWEKKLQIGDERLSE-------LRRTLNQREVKANENERILKQKERDLEELEKKID--------LSSSKLKERED 224 (1109)
Q Consensus 160 re~L~eweKkLqe~eerL~~-------~qr~lNqREe~~nE~~~~~k~kekeLEe~~kkie--------~~~~~Lk~ked 224 (1109)
+.+|++.+..|++..+.-.. +|..+++++..+.++...++.....||..++.|. .....|...-+
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~ 178 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVID 178 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 001278 225 EINSRLAELVVK 236 (1109)
Q Consensus 225 di~~rl~~L~~k 236 (1109)
.+..+|..|...
T Consensus 179 ~l~~ki~~l~~~ 190 (464)
T 1m1j_B 179 SLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 27
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.67 E-value=2.4e+02 Score=33.61 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=0.0
Q ss_pred CCCcCccccC
Q 001278 928 EGYSDSVTAG 937 (1109)
Q Consensus 928 eg~SdSvt~g 937 (1109)
+.-|.||+.|
T Consensus 395 ~e~~gs~sp~ 404 (562)
T 3ghg_A 395 EEVSGNVSPG 404 (562)
T ss_dssp ----------
T ss_pred ecccCCcCCC
Confidence 4445566665
No 28
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.98 E-value=3.4e+02 Score=25.15 Aligned_cols=40 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001278 436 ELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIAD 475 (1109)
Q Consensus 436 e~LlkEae~Lk~eKekFE~EWE~LDEKR~el~kE~~~I~e 475 (1109)
..|..|-..|-++....|+|.+.||.=.+.++.|+..+..
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555555555555555555555544443
No 29
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.41 E-value=3.2e+02 Score=25.18 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001278 398 LQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFE 453 (1109)
Q Consensus 398 ~qi~ee~e~LkiteeEr~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 453 (1109)
.+|..+.+.+..++-|=.|+-.--..|.++.+..|.....|..|...|+++...|.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544555566666666666666666666666665544
No 30
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.27 E-value=5.7e+02 Score=26.60 Aligned_cols=112 Identities=22% Similarity=0.257 Sum_probs=51.8
Q ss_pred HHHhHHHHhhhhHHHHHHHHhhhhhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhhhhhhhhhHHHHHHhh
Q 001278 123 ELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKE 202 (1109)
Q Consensus 123 ~~eRkL~evEaRE~~LrRerlSf~~Erea~E~~~~~qre~L~eweKkLqe~eerL~~~qr~lNqREe~~nE~~~~~k~ke 202 (1109)
+++..|..++.|.+.|+.....+..|++..-.-+..+. .+|-+.....+..|...+....+=- . .+...|
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~el~~l~~~~~~l~----~---~ireLE 115 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLH----K---YVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHH
Confidence 34555566666666666666666666655544332222 2232222222222332222111100 1 112233
Q ss_pred hhHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 001278 203 RDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLR 244 (1109)
Q Consensus 203 keLEe~~kkie~~~~~Lk~keddi~~rl~~L~~kEke~~~~~ 244 (1109)
..-+.+....-.+.++|...+..++.-|..++.=|-+++.+.
T Consensus 116 q~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 116 QANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555566666666666666666666666544
No 31
>3oc5_A Toxin coregulated pilus biosynthesis protein F; multidomain protein, immunoglobulin-like (IG-like) fold, CEL adhesion; 2.40A {Vibrio cholerae}
Probab=24.97 E-value=17 Score=39.33 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=12.6
Q ss_pred CCCccccccccccccc
Q 001278 1093 HPGEASIGKKLWNFFT 1108 (1109)
Q Consensus 1093 hPGevSIGKKLWtFFT 1108 (1109)
||-+.+.||++|+|.|
T Consensus 258 h~s~n~~Gk~i~~~st 273 (318)
T 3oc5_A 258 QPSNNLTGKKLYNVST 273 (318)
T ss_dssp CC---CCSEEEEEEEC
T ss_pred ccccCCCccceEEEec
Confidence 9999999999999987
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.51 E-value=4e+02 Score=24.17 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 001278 360 AEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 399 (1109)
Q Consensus 360 aeEK~le~ek~~L~~dkeel~~lK~elEK~~a~~e~q~~q 399 (1109)
+..+.|+.....|..++..|..--++++-..+.+..++..
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~e 74 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYH 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445555555555555555554434444444444444333
No 33
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.24 E-value=3.8e+02 Score=26.35 Aligned_cols=11 Identities=0% Similarity=0.214 Sum_probs=5.1
Q ss_pred HHHHHHHhhHH
Q 001278 342 NDLAARLKSVK 352 (1109)
Q Consensus 342 kdl~~k~k~LK 352 (1109)
..|+.|+..++
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 34
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.96 E-value=1.2e+02 Score=27.43 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=24.7
Q ss_pred hhhhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhh
Q 001278 184 LNQREVKANENERILKQKERDLEELEKKIDLSSSKL 219 (1109)
Q Consensus 184 lNqREe~~nE~~~~~k~kekeLEe~~kkie~~~~~L 219 (1109)
|.++++.|.+-+..+..|+.++-+++..+|.-.+++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 566677777777777777777777777777655544
No 35
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=20.92 E-value=58 Score=31.05 Aligned_cols=42 Identities=29% Similarity=0.221 Sum_probs=33.8
Q ss_pred hhhccccchhhHHhHhhhhhcc---------------hhhHHhhhhhhHHHHHHhhc
Q 001278 78 TKLFSEKTLTDANTLLGGIEGK---------------SLEVEEKFHAAEAKLAEVNR 119 (1109)
Q Consensus 78 iK~~sesKlaeA~aLv~~~eeK---------------slEvE~Kl~aAeaklAEa~R 119 (1109)
-|..++.+|..|..-++.+.+| +++|+.++++|...+.++.+
T Consensus 22 kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~ 78 (101)
T 3teq_A 22 KKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATA 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888898888888888 46788888888888888765
Done!