Query 001278
Match_columns 1109
No_of_seqs 39 out of 41
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 19:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f5na1 a.114.1.1 (A:284-583) 50.2 1E+02 0.0075 28.9 18.5 17 445-461 174-190 (300)
2 d1f5na1 a.114.1.1 (A:284-583) 22.6 2.9E+02 0.021 25.6 21.8 11 272-282 70-80 (300)
3 d1seta1 a.2.7.1 (A:1-110) Sery 13.7 2.9E+02 0.021 23.1 8.1 23 422-444 38-60 (110)
4 d1qvra2 c.37.1.20 (A:149-535) 13.5 2.2E+02 0.016 29.2 8.6 20 418-437 312-331 (387)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 12.0 3.8E+02 0.027 22.2 8.4 47 355-401 1-52 (72)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 11.1 1.6E+02 0.012 24.1 5.3 42 621-662 44-88 (88)
7 d1bjta_ e.11.1.1 (A:) DNA topo 7.8 2.3E+02 0.017 31.8 6.5 21 446-466 738-758 (760)
8 d1qvra2 c.37.1.20 (A:149-535) 7.0 5.2E+02 0.038 26.3 8.5 45 601-645 285-329 (387)
9 d1yfua1 b.82.1.20 (A:1-174) 3- 5.4 67 0.0049 30.8 0.2 12 657-668 157-168 (174)
10 d1nkpb_ a.38.1.1 (B:) Max prot 5.4 3.9E+02 0.028 21.3 5.1 35 628-662 49-83 (83)
No 1
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.17 E-value=1e+02 Score=28.92 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhhHH
Q 001278 445 LQQDREKFEKEWEVLDE 461 (1109)
Q Consensus 445 Lk~eKekFE~EWE~LDE 461 (1109)
+......|...|+.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~ 190 (300)
T d1f5na1 174 AEEILQTYLKSKESMTD 190 (300)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344455555555543
No 2
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.64 E-value=2.9e+02 Score=25.64 Aligned_cols=11 Identities=36% Similarity=0.286 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 001278 272 LLDDQRAILDA 282 (1109)
Q Consensus 272 Lldeh~a~L~~ 282 (1109)
|.+.|...+..
T Consensus 70 l~~~h~~~~~~ 80 (300)
T d1f5na1 70 LLDLHRDSERE 80 (300)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=13.72 E-value=2.9e+02 Score=23.11 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 001278 422 SQLKQQIETYRHQQELLLKEHED 444 (1109)
Q Consensus 422 seLKeEId~~R~Qke~LlkEae~ 444 (1109)
-+|..+++.+|++...+.+++-.
T Consensus 38 r~l~~~~e~l~~~rN~~sk~i~k 60 (110)
T d1seta1 38 QELKKRLQEVQTERNQVAKRVPK 60 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776643
No 4
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=13.49 E-value=2.2e+02 Score=29.22 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001278 418 LRLQSQLKQQIETYRHQQEL 437 (1109)
Q Consensus 418 lrLqseLKeEId~~R~Qke~ 437 (1109)
+.-..+||++|+.+|++.+.
T Consensus 312 l~~i~~Lk~~Le~lr~~le~ 331 (387)
T d1qvra2 312 LRKLREAQHRLDEVRREIEL 331 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888887654
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.00 E-value=3.8e+02 Score=22.23 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=33.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHhHHHHHHHHHH
Q 001278 355 EKFVKAEEKKLELEKQKLIADKESLQILKVEID-----QIESENAQQELQIQ 401 (1109)
Q Consensus 355 EksL~aeEK~le~ek~~L~~dkeel~~lK~elE-----K~~a~~e~q~~qi~ 401 (1109)
|+||.....+|...+.+|..-+.++..++.+.- +++..++..+.++.
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~le 52 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 52 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888887765 44555554444443
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.11 E-value=1.6e+02 Score=24.09 Aligned_cols=42 Identities=12% Similarity=0.294 Sum_probs=26.4
Q ss_pred HhhhhhcHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHhhccc
Q 001278 621 QLGMRKDIDELDIL---CRRLYGDREQFKREKERFLEFVEKHTSC 662 (1109)
Q Consensus 621 ~~em~kdIdeL~~l---s~KLk~qRE~~~~eRe~fl~~vEk~K~c 662 (1109)
+.-+..-|+-+..| -..|....+.+......+...+.+|.+|
T Consensus 44 ~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 44 VVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444443 3455556667777777788888888888
No 7
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.76 E-value=2.3e+02 Score=31.79 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhHHhHHHH
Q 001278 446 QQDREKFEKEWEVLDEKRDEI 466 (1109)
Q Consensus 446 k~eKekFE~EWE~LDEKR~el 466 (1109)
+.+...|+++|...++++++-
T Consensus 738 ~~DL~~l~~~y~k~~~~~~e~ 758 (760)
T d1bjta_ 738 NTDLKAFEVGYQEFLQRDAEA 758 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 566677888888888877653
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=7.03 E-value=5.2e+02 Score=26.28 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhHhhHHHHHhhhhhcHHHHHHHHHHhhhhHHHH
Q 001278 601 DQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF 645 (1109)
Q Consensus 601 ~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~qRE~~ 645 (1109)
..++.+...+......|..+|...+..|+.+..+..+|.+.|..+
T Consensus 285 ~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~l 329 (387)
T d1qvra2 285 KAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 329 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666778888999999999999999888888777654
No 9
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=5.40 E-value=67 Score=30.79 Aligned_cols=12 Identities=33% Similarity=1.049 Sum_probs=0.0
Q ss_pred Hhhccccchhhh
Q 001278 657 EKHTSCKNCGEM 668 (1109)
Q Consensus 657 Ek~K~ckncg~~ 668 (1109)
+.+++|++||.+
T Consensus 157 ee~RTC~~CG~v 168 (174)
T d1yfua1 157 EDKRRCPHCGQV 168 (174)
T ss_dssp HHHHBCTTTCCB
T ss_pred hhcccCCCCCCc
No 10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=3.9e+02 Score=21.34 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc
Q 001278 628 IDELDILCRRLYGDREQFKREKERFLEFVEKHTSC 662 (1109)
Q Consensus 628 IdeL~~ls~KLk~qRE~~~~eRe~fl~~vEk~K~c 662 (1109)
|..|......|..+-+.+..+...+...|+.+..|
T Consensus 49 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 83 (83)
T d1nkpb_ 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGGC 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Done!