Query 001279
Match_columns 1108
No_of_seqs 496 out of 3139
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 20:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 5.6E-41 1.2E-45 374.2 39.6 542 35-844 62-616 (775)
2 KOG0271 Notchless-like WD40 re 100.0 4.8E-40 1.1E-44 340.0 28.4 364 71-698 110-479 (480)
3 KOG0319 WD40-repeat-containing 100.0 4.3E-38 9.4E-43 351.2 40.1 488 34-701 104-620 (775)
4 KOG0271 Notchless-like WD40 re 100.0 7.9E-39 1.7E-43 331.1 28.4 359 32-631 112-479 (480)
5 KOG0318 WD40 repeat stress pro 100.0 2.1E-36 4.4E-41 325.4 46.6 520 26-699 49-601 (603)
6 KOG0291 WD40-repeat-containing 100.0 6.1E-35 1.3E-39 325.7 53.9 515 25-705 4-555 (893)
7 KOG0306 WD40-repeat-containing 100.0 4.7E-36 1E-40 334.4 44.1 489 34-708 64-630 (888)
8 KOG0291 WD40-repeat-containing 100.0 2.7E-34 5.8E-39 320.5 53.2 496 27-726 87-651 (893)
9 KOG1983 Tomosyn and related SN 100.0 5.2E-33 1.1E-37 345.1 38.6 262 780-1108 723-993 (993)
10 KOG0306 WD40-repeat-containing 100.0 4E-31 8.8E-36 295.1 48.1 590 46-848 33-665 (888)
11 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-33 4.7E-38 295.3 22.0 281 74-631 173-458 (459)
12 KOG0318 WD40 repeat stress pro 100.0 1.6E-29 3.4E-34 272.5 49.8 492 37-700 20-560 (603)
13 KOG0272 U4/U6 small nuclear ri 100.0 9E-33 1.9E-37 290.7 22.5 284 115-698 173-458 (459)
14 KOG1408 WD40 repeat protein [F 100.0 1.3E-29 2.7E-34 280.3 38.4 602 34-908 77-726 (1080)
15 KOG1063 RNA polymerase II elon 100.0 1.4E-28 3.1E-33 273.1 39.3 550 29-700 48-699 (764)
16 KOG0296 Angio-associated migra 100.0 1.6E-28 3.4E-33 254.5 35.3 341 27-633 56-398 (399)
17 KOG0273 Beta-transducin family 100.0 3.4E-29 7.3E-34 266.9 31.1 324 72-699 174-522 (524)
18 KOG0286 G-protein beta subunit 100.0 9.5E-29 2.1E-33 248.9 31.5 291 70-631 49-343 (343)
19 KOG0286 G-protein beta subunit 100.0 3E-28 6.5E-33 245.3 32.2 215 17-282 38-261 (343)
20 KOG0273 Beta-transducin family 100.0 2.1E-28 4.5E-33 260.9 32.3 334 30-633 173-523 (524)
21 KOG1539 WD repeat protein [Gen 100.0 1.1E-26 2.5E-31 263.0 44.4 512 33-706 74-612 (910)
22 KOG2106 Uncharacterized conser 100.0 2.6E-26 5.6E-31 246.2 44.3 408 29-700 97-521 (626)
23 KOG0315 G-protein beta subunit 100.0 1.2E-27 2.7E-32 235.4 30.5 298 89-657 11-309 (311)
24 KOG0315 G-protein beta subunit 100.0 1E-27 2.2E-32 236.0 29.2 185 47-281 10-198 (311)
25 KOG0279 G protein beta subunit 100.0 1.8E-27 4E-32 238.5 31.0 204 32-282 12-224 (315)
26 KOG0276 Vesicle coat complex C 100.0 2.8E-26 6.1E-31 251.5 41.1 200 35-282 13-217 (794)
27 KOG0296 Angio-associated migra 100.0 7.8E-27 1.7E-31 242.0 33.4 338 68-700 56-398 (399)
28 KOG0295 WD40 repeat-containing 100.0 2.6E-27 5.7E-32 245.2 24.9 297 32-632 105-405 (406)
29 KOG0263 Transcription initiati 100.0 1.5E-27 3.3E-32 270.6 24.5 296 76-658 378-695 (707)
30 KOG0292 Vesicle coat complex C 100.0 2.3E-25 4.9E-30 252.6 40.7 223 35-280 9-236 (1202)
31 KOG0263 Transcription initiati 100.0 1.3E-27 2.8E-32 271.2 22.7 151 490-701 500-650 (707)
32 KOG0279 G protein beta subunit 100.0 3E-26 6.5E-31 229.8 29.5 293 115-700 13-313 (315)
33 KOG0285 Pleiotropic regulator 100.0 9.9E-27 2.1E-31 239.6 24.8 200 32-282 148-350 (460)
34 KOG2048 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 234.3 47.4 521 33-701 23-549 (691)
35 KOG0645 WD40 repeat protein [G 99.9 7.6E-25 1.7E-29 218.8 32.7 205 29-280 8-225 (312)
36 KOG0293 WD40 repeat-containing 99.9 3E-26 6.6E-31 240.1 23.8 200 32-281 221-426 (519)
37 PLN00181 protein SPA1-RELATED; 99.9 2.6E-25 5.6E-30 281.5 37.4 321 56-632 457-792 (793)
38 KOG1539 WD repeat protein [Gen 99.9 6.8E-25 1.5E-29 248.7 36.4 466 38-699 162-647 (910)
39 KOG0276 Vesicle coat complex C 99.9 2.1E-24 4.5E-29 236.9 38.0 282 73-628 10-294 (794)
40 KOG0292 Vesicle coat complex C 99.9 1.1E-24 2.3E-29 247.2 36.8 313 75-634 8-322 (1202)
41 KOG0284 Polyadenylation factor 99.9 8.4E-27 1.8E-31 244.5 18.3 145 496-700 235-380 (464)
42 PLN00181 protein SPA1-RELATED; 99.9 1.5E-24 3.3E-29 274.5 40.1 198 33-281 481-691 (793)
43 KOG0265 U5 snRNP-specific prot 99.9 6.1E-25 1.3E-29 222.5 28.3 202 29-281 41-247 (338)
44 KOG0295 WD40 repeat-containing 99.9 2.6E-25 5.5E-30 230.5 25.3 309 47-698 76-404 (406)
45 KOG0645 WD40 repeat protein [G 99.9 1.8E-24 3.8E-29 216.2 30.2 293 70-633 8-311 (312)
46 KOG0266 WD40 repeat-containing 99.9 6.8E-25 1.5E-29 258.1 32.2 200 35-282 159-366 (456)
47 KOG0285 Pleiotropic regulator 99.9 6.1E-25 1.3E-29 226.5 26.2 288 71-634 146-440 (460)
48 cd00200 WD40 WD40 domain, foun 99.9 4.7E-24 1E-28 235.8 35.7 283 72-631 5-289 (289)
49 KOG0265 U5 snRNP-specific prot 99.9 1.6E-24 3.5E-29 219.5 28.4 284 115-696 45-334 (338)
50 KOG1063 RNA polymerase II elon 99.9 9.2E-23 2E-27 227.2 43.5 597 31-850 10-702 (764)
51 cd00200 WD40 WD40 domain, foun 99.9 5.1E-24 1.1E-28 235.6 33.8 199 33-281 7-208 (289)
52 KOG0284 Polyadenylation factor 99.9 7.9E-26 1.7E-30 237.3 17.3 198 34-281 95-295 (464)
53 KOG0282 mRNA splicing factor [ 99.9 1.6E-25 3.5E-30 240.2 18.4 203 30-280 209-415 (503)
54 KOG0266 WD40 repeat-containing 99.9 6.3E-24 1.4E-28 249.9 32.2 291 71-633 154-454 (456)
55 KOG1408 WD40 repeat protein [F 99.9 3.2E-23 7E-28 229.9 34.8 496 34-701 121-714 (1080)
56 KOG0281 Beta-TrCP (transducin 99.9 2.1E-25 4.6E-30 228.5 16.2 153 36-212 198-352 (499)
57 KOG0282 mRNA splicing factor [ 99.9 3.7E-25 8.1E-30 237.4 18.3 295 65-631 203-503 (503)
58 KOG0278 Serine/threonine kinas 99.9 1.3E-24 2.8E-29 214.0 18.7 204 29-282 8-215 (334)
59 KOG2106 Uncharacterized conser 99.9 7.7E-22 1.7E-26 212.1 38.3 460 33-699 152-625 (626)
60 KOG0293 WD40 repeat-containing 99.9 6.5E-24 1.4E-28 222.7 21.5 289 115-700 222-513 (519)
61 KOG0281 Beta-TrCP (transducin 99.9 7.1E-25 1.5E-29 224.7 13.9 276 118-703 198-480 (499)
62 KOG0310 Conserved WD40 repeat- 99.9 8.2E-23 1.8E-27 220.1 26.0 281 75-631 25-307 (487)
63 KOG0772 Uncharacterized conser 99.9 1.3E-22 2.8E-27 218.5 24.8 312 115-699 165-486 (641)
64 KOG0275 Conserved WD40 repeat- 99.9 1.3E-23 2.9E-28 213.2 16.2 206 29-280 207-423 (508)
65 KOG0313 Microtubule binding pr 99.9 3.6E-22 7.8E-27 208.4 26.4 312 109-700 97-418 (423)
66 KOG0313 Microtubule binding pr 99.9 5.4E-22 1.2E-26 207.0 27.0 212 32-282 102-332 (423)
67 KOG0268 Sof1-like rRNA process 99.9 2.2E-23 4.8E-28 215.8 15.0 200 29-282 60-261 (433)
68 KOG0275 Conserved WD40 repeat- 99.9 4.1E-23 8.8E-28 209.8 15.9 279 478-879 208-502 (508)
69 KOG0316 Conserved WD40 repeat- 99.9 1.7E-21 3.6E-26 190.8 26.2 202 30-283 12-216 (307)
70 KOG0772 Uncharacterized conser 99.9 6.8E-22 1.5E-26 213.0 23.8 185 65-280 156-347 (641)
71 KOG0316 Conserved WD40 repeat- 99.9 2.8E-21 6.2E-26 189.2 25.2 271 65-658 6-280 (307)
72 KOG0643 Translation initiation 99.9 1E-20 2.2E-25 188.8 28.6 162 70-282 4-179 (327)
73 KOG1407 WD40 repeat protein [F 99.9 8.8E-21 1.9E-25 188.8 26.9 265 115-658 18-282 (313)
74 KOG0299 U3 snoRNP-associated p 99.9 6.9E-21 1.5E-25 203.7 26.2 290 68-622 134-444 (479)
75 KOG0640 mRNA cleavage stimulat 99.9 1.6E-21 3.4E-26 197.7 20.1 209 30-282 107-337 (430)
76 KOG0643 Translation initiation 99.9 4.5E-21 9.8E-26 191.3 22.8 208 30-282 5-222 (327)
77 KOG0278 Serine/threonine kinas 99.9 1.2E-21 2.6E-26 193.2 17.3 286 70-636 8-300 (334)
78 KOG2048 WD40 repeat protein [G 99.9 4.2E-18 9E-23 190.5 47.0 160 75-282 24-186 (691)
79 KOG0288 WD40 repeat protein Ti 99.9 1.1E-21 2.4E-26 206.7 17.4 285 115-697 173-458 (459)
80 KOG0299 U3 snoRNP-associated p 99.9 2.3E-20 5.1E-25 199.6 25.7 205 26-282 133-358 (479)
81 KOG0277 Peroxisomal targeting 99.9 2.2E-20 4.8E-25 185.2 22.1 147 495-699 160-308 (311)
82 KOG0274 Cdc4 and related F-box 99.9 7.8E-20 1.7E-24 214.1 30.1 192 34-282 207-402 (537)
83 KOG0283 WD40 repeat-containing 99.9 1.2E-20 2.5E-25 217.0 22.2 296 74-636 265-579 (712)
84 PTZ00421 coronin; Provisional 99.9 1.2E-18 2.5E-23 204.3 39.2 293 487-895 24-331 (493)
85 KOG1445 Tumor-specific antigen 99.9 1.2E-18 2.6E-23 191.4 36.4 163 491-703 587-753 (1012)
86 KOG0305 Anaphase promoting com 99.9 7.7E-20 1.7E-24 205.8 27.4 275 80-635 181-463 (484)
87 KOG0274 Cdc4 and related F-box 99.9 7.8E-20 1.7E-24 214.1 28.6 146 497-707 343-489 (537)
88 KOG0277 Peroxisomal targeting 99.9 3.5E-20 7.7E-25 183.7 21.5 282 80-632 12-308 (311)
89 KOG1963 WD40 repeat protein [G 99.9 1.2E-18 2.7E-23 200.8 37.0 547 31-706 12-589 (792)
90 KOG0288 WD40 repeat protein Ti 99.9 4.7E-21 1E-25 202.0 15.8 197 33-282 173-373 (459)
91 KOG0647 mRNA export protein (c 99.9 1.9E-19 4.2E-24 182.9 26.7 199 34-282 26-230 (347)
92 KOG0973 Histone transcription 99.9 9.6E-20 2.1E-24 214.5 27.5 176 28-280 8-201 (942)
93 KOG0310 Conserved WD40 repeat- 99.9 8.9E-20 1.9E-24 196.8 24.2 200 33-282 24-227 (487)
94 KOG0973 Histone transcription 99.8 1.1E-19 2.5E-24 213.9 25.8 325 117-705 13-363 (942)
95 KOG0640 mRNA cleavage stimulat 99.8 9.5E-20 2.1E-24 184.9 21.1 169 68-280 104-291 (430)
96 KOG0289 mRNA splicing factor [ 99.8 5.2E-19 1.1E-23 187.6 26.4 284 78-632 221-505 (506)
97 KOG1036 Mitotic spindle checkp 99.8 1.2E-18 2.6E-23 178.2 27.4 195 35-280 13-207 (323)
98 KOG0283 WD40 repeat-containing 99.8 1.6E-19 3.6E-24 207.6 23.7 249 33-351 265-575 (712)
99 PTZ00421 coronin; Provisional 99.8 7.3E-19 1.6E-23 206.0 29.2 205 31-282 71-292 (493)
100 KOG2055 WD40 repeat protein [G 99.8 5E-19 1.1E-23 189.3 25.0 195 35-280 213-417 (514)
101 KOG0308 Conserved WD40 repeat- 99.8 2E-19 4.4E-24 199.4 22.4 212 32-282 18-245 (735)
102 KOG2096 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 178.1 25.8 170 71-279 81-257 (420)
103 KOG1446 Histone H3 (Lys4) meth 99.8 5.9E-18 1.3E-22 174.2 31.4 201 34-282 13-219 (311)
104 PTZ00420 coronin; Provisional 99.8 2.6E-18 5.6E-23 201.9 32.9 179 53-281 50-249 (568)
105 KOG1446 Histone H3 (Lys4) meth 99.8 7E-18 1.5E-22 173.7 31.6 285 75-631 13-301 (311)
106 KOG0646 WD40 repeat protein [G 99.8 3.9E-19 8.5E-24 190.8 23.1 139 497-659 190-330 (476)
107 KOG0294 WD40 repeat-containing 99.8 3.3E-18 7.1E-23 175.0 28.2 179 49-280 3-197 (362)
108 KOG0308 Conserved WD40 repeat- 99.8 1.2E-19 2.5E-24 201.3 19.1 150 490-700 178-327 (735)
109 KOG0301 Phospholipase A2-activ 99.8 9.8E-19 2.1E-23 195.6 26.2 116 30-147 9-130 (745)
110 KOG0641 WD40 repeat protein [G 99.8 1.1E-17 2.3E-22 162.7 29.8 305 68-633 24-349 (350)
111 PTZ00420 coronin; Provisional 99.8 1.9E-18 4.1E-23 203.0 29.8 207 29-282 68-295 (568)
112 KOG0300 WD40 repeat-containing 99.8 1.8E-18 3.9E-23 175.8 25.4 330 71-701 143-477 (481)
113 KOG0647 mRNA export protein (c 99.8 3.6E-18 7.7E-23 173.8 27.3 273 115-658 25-303 (347)
114 KOG1407 WD40 repeat protein [F 99.8 4.5E-18 9.8E-23 169.6 26.6 275 72-625 16-294 (313)
115 KOG1036 Mitotic spindle checkp 99.8 4.1E-18 8.8E-23 174.4 26.8 158 71-282 8-165 (323)
116 KOG0305 Anaphase promoting com 99.8 2.1E-18 4.5E-23 194.3 27.2 190 41-282 183-378 (484)
117 KOG0300 WD40 repeat-containing 99.8 2E-18 4.2E-23 175.6 23.5 215 17-282 129-388 (481)
118 KOG0641 WD40 repeat protein [G 99.8 2.9E-17 6.3E-22 159.7 30.5 149 497-699 196-348 (350)
119 PF08596 Lgl_C: Lethal giant l 99.8 4.5E-18 9.8E-23 192.8 27.8 320 538-915 3-358 (395)
120 KOG4283 Transcription-coupled 99.8 9.3E-18 2E-22 169.6 25.8 226 23-283 31-279 (397)
121 KOG0289 mRNA splicing factor [ 99.8 1.2E-17 2.5E-22 177.4 27.4 199 35-281 219-420 (506)
122 KOG2055 WD40 repeat protein [G 99.8 5.6E-18 1.2E-22 181.3 24.9 296 117-699 213-511 (514)
123 KOG1332 Vesicle coat complex C 99.8 1E-18 2.2E-23 172.6 17.6 125 71-210 6-136 (299)
124 KOG0294 WD40 repeat-containing 99.8 8.3E-18 1.8E-22 172.1 24.5 241 29-352 36-281 (362)
125 KOG0268 Sof1-like rRNA process 99.8 6.2E-19 1.3E-23 183.1 16.1 284 72-636 62-348 (433)
126 KOG1332 Vesicle coat complex C 99.8 2.6E-18 5.5E-23 169.7 18.2 207 29-280 5-241 (299)
127 KOG0269 WD40 repeat-containing 99.8 2.5E-18 5.5E-23 194.5 19.6 145 497-698 191-338 (839)
128 KOG0301 Phospholipase A2-activ 99.8 2.6E-17 5.7E-22 184.3 26.8 136 497-700 153-288 (745)
129 KOG0646 WD40 repeat protein [G 99.8 1.3E-17 2.7E-22 179.4 23.0 190 48-280 51-247 (476)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.8E-16 8.2E-21 175.3 36.1 185 47-282 1-189 (300)
131 KOG2096 WD40 repeat protein [G 99.8 5E-17 1.1E-21 166.1 24.4 198 29-280 80-308 (420)
132 KOG0650 WD40 repeat nucleolar 99.8 4.3E-17 9.3E-22 179.3 25.2 148 492-697 575-732 (733)
133 KOG1274 WD40 repeat protein [G 99.8 7.3E-17 1.6E-21 186.3 28.2 213 27-282 5-220 (933)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 5.4E-16 1.2E-20 174.1 34.5 141 89-280 2-145 (300)
135 KOG0639 Transducin-like enhanc 99.8 2.4E-17 5.2E-22 177.3 20.7 283 71-632 414-703 (705)
136 KOG0321 WD40 repeat-containing 99.8 1.1E-16 2.4E-21 177.6 25.2 232 29-282 43-303 (720)
137 KOG2445 Nuclear pore complex c 99.8 2.7E-16 5.8E-21 160.6 25.8 135 115-283 11-147 (361)
138 KOG1273 WD40 repeat protein [G 99.7 2.1E-16 4.6E-21 161.4 23.4 206 31-281 20-227 (405)
139 KOG0639 Transducin-like enhanc 99.7 4E-17 8.7E-22 175.5 18.6 149 487-699 555-703 (705)
140 KOG0321 WD40 repeat-containing 99.7 6.1E-16 1.3E-20 171.8 24.6 161 493-702 227-393 (720)
141 KOG1274 WD40 repeat protein [G 99.7 1.5E-15 3.4E-20 175.5 28.8 160 71-282 8-170 (933)
142 KOG0267 Microtubule severing p 99.7 9.1E-18 2E-22 188.4 9.7 167 481-708 68-234 (825)
143 KOG4328 WD40 protein [Function 99.7 8E-16 1.7E-20 164.9 23.4 200 33-280 184-399 (498)
144 KOG4283 Transcription-coupled 99.7 2.4E-15 5.2E-20 152.3 25.5 161 71-280 38-219 (397)
145 KOG0264 Nucleosome remodeling 99.7 6.7E-16 1.5E-20 166.2 22.4 275 17-352 106-404 (422)
146 KOG0264 Nucleosome remodeling 99.7 2.8E-16 6.1E-21 169.1 18.9 217 33-281 175-405 (422)
147 KOG1273 WD40 repeat protein [G 99.7 4.4E-15 9.6E-20 151.9 25.8 159 490-700 160-322 (405)
148 KOG1188 WD40 repeat protein [G 99.7 2.1E-15 4.5E-20 156.4 21.0 191 47-283 40-245 (376)
149 KOG0267 Microtubule severing p 99.7 5.8E-17 1.3E-21 182.1 9.1 195 29-272 64-260 (825)
150 COG2319 FOG: WD40 repeat [Gene 99.7 1E-12 2.2E-17 153.8 45.9 370 30-701 60-443 (466)
151 KOG0650 WD40 repeat nucleolar 99.7 8.7E-15 1.9E-19 161.4 25.4 203 27-280 391-637 (733)
152 KOG1538 Uncharacterized conser 99.7 2.7E-14 5.8E-19 158.4 28.8 148 78-280 14-162 (1081)
153 KOG4378 Nuclear protein COP1 [ 99.7 3.6E-15 7.7E-20 160.6 20.8 125 497-659 179-304 (673)
154 KOG2445 Nuclear pore complex c 99.7 4.6E-14 1E-18 144.4 27.5 285 30-366 8-332 (361)
155 KOG1445 Tumor-specific antigen 99.7 3.6E-14 7.9E-19 156.6 28.7 153 32-210 37-202 (1012)
156 KOG0270 WD40 repeat-containing 99.7 1E-14 2.2E-19 156.2 23.0 168 82-281 131-318 (463)
157 KOG0269 WD40 repeat-containing 99.7 1.1E-15 2.3E-20 173.5 15.5 205 31-282 129-342 (839)
158 KOG0270 WD40 repeat-containing 99.6 5.8E-15 1.2E-19 158.1 19.4 203 33-282 171-406 (463)
159 KOG0302 Ribosome Assembly prot 99.6 6E-15 1.3E-19 154.5 17.7 232 19-278 194-436 (440)
160 KOG1963 WD40 repeat protein [G 99.6 6.1E-12 1.3E-16 146.2 42.3 337 486-921 208-558 (792)
161 KOG1034 Transcriptional repres 99.6 6.5E-14 1.4E-18 144.5 23.1 168 71-283 33-214 (385)
162 KOG1240 Protein kinase contain 99.6 7.3E-14 1.6E-18 165.7 26.7 183 62-282 1034-1227(1431)
163 KOG4227 WD40 repeat protein [G 99.6 3.5E-14 7.5E-19 148.6 20.8 164 32-210 53-227 (609)
164 KOG4328 WD40 protein [Function 99.6 5.3E-14 1.1E-18 151.2 22.1 153 495-700 335-495 (498)
165 KOG0302 Ribosome Assembly prot 99.6 7.2E-15 1.6E-19 154.0 15.1 160 489-700 217-378 (440)
166 COG2319 FOG: WD40 repeat [Gene 99.6 5.6E-11 1.2E-15 139.1 46.9 354 50-708 42-408 (466)
167 KOG1517 Guanine nucleotide bin 99.6 3.1E-13 6.7E-18 157.9 26.1 156 493-702 1219-1383(1387)
168 KOG1538 Uncharacterized conser 99.6 2.2E-12 4.8E-17 143.5 30.9 274 37-405 14-292 (1081)
169 KOG1912 WD40 repeat protein [G 99.6 7.2E-13 1.6E-17 150.1 27.3 212 34-281 54-305 (1062)
170 KOG1034 Transcriptional repres 99.6 2.5E-13 5.5E-18 140.2 21.7 300 494-887 54-375 (385)
171 KOG0322 G-protein beta subunit 99.6 1.5E-13 3.3E-18 137.8 19.1 76 71-148 9-86 (323)
172 KOG0322 G-protein beta subunit 99.6 7.2E-14 1.6E-18 140.0 16.7 154 497-699 167-322 (323)
173 KOG1517 Guanine nucleotide bin 99.6 4.4E-13 9.6E-18 156.6 25.4 166 78-281 1066-1240(1387)
174 KOG2919 Guanine nucleotide-bin 99.6 7E-13 1.5E-17 136.5 23.4 200 40-281 54-282 (406)
175 KOG4378 Nuclear protein COP1 [ 99.5 9.4E-14 2E-18 149.8 15.6 202 37-286 81-286 (673)
176 KOG1009 Chromatin assembly com 99.5 3.1E-12 6.6E-17 136.0 25.3 164 76-280 13-195 (434)
177 KOG0642 Cell-cycle nuclear pro 99.5 1.6E-13 3.4E-18 151.4 15.3 133 71-212 289-430 (577)
178 KOG2919 Guanine nucleotide-bin 99.5 3.1E-12 6.7E-17 131.8 23.5 163 488-703 163-331 (406)
179 KOG1587 Cytoplasmic dynein int 99.5 1.8E-12 3.8E-17 151.1 24.7 114 487-634 402-517 (555)
180 KOG0307 Vesicle coat complex C 99.5 1.1E-13 2.5E-18 164.4 14.5 132 110-282 57-194 (1049)
181 KOG1009 Chromatin assembly com 99.5 1.5E-12 3.3E-17 138.3 20.9 183 486-705 16-200 (434)
182 PRK11028 6-phosphogluconolacto 99.5 5.4E-11 1.2E-15 135.6 35.2 144 93-281 7-157 (330)
183 KOG0307 Vesicle coat complex C 99.5 8.3E-14 1.8E-18 165.5 11.5 207 34-286 63-290 (1049)
184 KOG4227 WD40 repeat protein [G 99.5 5.2E-12 1.1E-16 132.5 22.6 168 71-282 51-227 (609)
185 KOG0644 Uncharacterized conser 99.5 1.9E-13 4.1E-18 155.9 11.9 161 71-280 185-346 (1113)
186 KOG0771 Prolactin regulatory e 99.5 7.9E-13 1.7E-17 141.7 15.5 198 39-281 148-355 (398)
187 KOG1007 WD repeat protein TSSC 99.4 3.6E-12 7.9E-17 129.4 17.2 224 36-280 124-361 (370)
188 KOG1007 WD repeat protein TSSC 99.4 2.9E-11 6.3E-16 122.9 23.6 150 493-698 182-359 (370)
189 KOG0642 Cell-cycle nuclear pro 99.4 1.8E-12 3.9E-17 143.1 15.4 217 33-282 292-563 (577)
190 KOG1523 Actin-related protein 99.4 1E-10 2.2E-15 121.0 27.1 222 34-282 9-238 (361)
191 KOG0290 Conserved WD40 repeat- 99.4 1.4E-11 3.1E-16 125.3 20.2 206 30-282 91-320 (364)
192 KOG1587 Cytoplasmic dynein int 99.4 3E-11 6.6E-16 140.9 25.7 193 57-280 222-428 (555)
193 KOG0303 Actin-binding protein 99.4 2E-11 4.4E-16 129.1 20.8 133 532-708 77-211 (472)
194 KOG0290 Conserved WD40 repeat- 99.4 1.7E-10 3.6E-15 117.6 25.6 99 497-625 257-358 (364)
195 KOG4497 Uncharacterized conser 99.4 2.1E-10 4.6E-15 118.6 26.2 138 40-198 13-153 (447)
196 KOG0303 Actin-binding protein 99.4 1.3E-11 2.8E-16 130.5 17.9 211 25-282 71-296 (472)
197 KOG2394 WD40 protein DMR-N9 [G 99.4 5.1E-11 1.1E-15 130.7 22.7 138 538-703 292-455 (636)
198 KOG0649 WD40 repeat protein [G 99.4 6.3E-11 1.4E-15 117.7 20.8 257 37-412 12-280 (325)
199 KOG0771 Prolactin regulatory e 99.4 4.2E-12 9.1E-17 136.2 13.2 176 488-699 149-353 (398)
200 KOG4497 Uncharacterized conser 99.4 2.3E-10 4.9E-15 118.4 24.7 139 81-270 13-153 (447)
201 KOG1524 WD40 repeat-containing 99.4 1.2E-10 2.6E-15 127.4 23.7 176 47-275 75-250 (737)
202 KOG0644 Uncharacterized conser 99.4 2.9E-12 6.3E-17 146.4 11.5 157 32-207 187-345 (1113)
203 PRK01742 tolB translocation pr 99.3 7.8E-11 1.7E-15 138.7 23.7 174 56-281 183-362 (429)
204 KOG1310 WD40 repeat protein [G 99.3 1E-10 2.3E-15 128.1 22.2 236 31-283 46-306 (758)
205 KOG1188 WD40 repeat protein [G 99.3 3.4E-11 7.3E-16 125.6 17.0 156 495-706 84-248 (376)
206 KOG2110 Uncharacterized conser 99.3 2.3E-09 5.1E-14 113.3 30.5 145 482-638 172-338 (391)
207 PRK11028 6-phosphogluconolacto 99.3 1.6E-09 3.6E-14 123.4 31.5 216 28-281 27-259 (330)
208 KOG2111 Uncharacterized conser 99.3 4.5E-09 9.8E-14 109.1 30.3 128 490-628 188-317 (346)
209 KOG1240 Protein kinase contain 99.3 5.7E-10 1.2E-14 133.4 26.3 208 31-283 1044-1276(1431)
210 PRK01742 tolB translocation pr 99.3 1.9E-10 4.1E-15 135.4 22.5 195 32-280 200-401 (429)
211 KOG2110 Uncharacterized conser 99.3 4.5E-10 9.7E-15 118.6 21.9 174 59-282 70-250 (391)
212 KOG0974 WD-repeat protein WDR6 99.2 7.1E-07 1.5E-11 106.5 47.7 193 41-283 93-291 (967)
213 KOG0649 WD40 repeat protein [G 99.2 7.9E-10 1.7E-14 110.0 19.6 176 490-706 17-192 (325)
214 KOG1523 Actin-related protein 99.2 9.4E-10 2E-14 114.0 20.9 162 76-279 10-175 (361)
215 KOG1334 WD40 repeat protein [G 99.2 1.2E-10 2.6E-15 126.5 14.8 125 71-210 137-265 (559)
216 KOG2321 WD40 repeat protein [G 99.2 9E-10 2E-14 121.9 21.3 281 28-381 44-326 (703)
217 KOG1334 WD40 repeat protein [G 99.2 2.8E-10 6.1E-15 123.7 16.3 218 32-279 139-365 (559)
218 PRK03629 tolB translocation pr 99.2 9E-09 1.9E-13 121.0 29.7 175 57-280 179-363 (429)
219 PF02239 Cytochrom_D1: Cytochr 99.2 4.9E-08 1.1E-12 111.3 34.1 192 48-282 6-204 (369)
220 PRK03629 tolB translocation pr 99.2 5.5E-09 1.2E-13 122.8 25.8 197 34-280 197-406 (429)
221 KOG1272 WD40-repeat-containing 99.1 2.8E-10 6E-15 123.0 12.1 150 489-702 257-411 (545)
222 KOG1912 WD40 repeat protein [G 99.1 6.4E-09 1.4E-13 118.8 23.2 155 78-280 17-186 (1062)
223 PF04762 IKI3: IKI3 family; I 99.1 5.2E-06 1.1E-10 105.0 51.6 475 36-635 22-566 (928)
224 PRK05137 tolB translocation pr 99.1 2.6E-08 5.7E-13 117.7 29.2 176 57-281 182-367 (435)
225 PRK04922 tolB translocation pr 99.1 6.8E-09 1.5E-13 122.5 23.9 198 33-280 201-411 (433)
226 KOG2139 WD40 repeat protein [G 99.1 2.4E-08 5.2E-13 105.1 24.4 208 35-273 140-368 (445)
227 PRK05137 tolB translocation pr 99.1 1.2E-08 2.7E-13 120.5 25.2 199 33-281 199-413 (435)
228 PRK02889 tolB translocation pr 99.1 2.8E-08 6E-13 117.0 26.3 177 57-282 176-362 (427)
229 KOG2394 WD40 protein DMR-N9 [G 99.1 1.1E-09 2.4E-14 120.4 12.4 102 25-127 281-384 (636)
230 KOG1524 WD40 repeat-containing 99.0 2.4E-09 5.2E-14 117.4 13.8 182 33-278 102-284 (737)
231 PRK02889 tolB translocation pr 99.0 2.2E-08 4.8E-13 117.8 22.8 190 33-272 193-392 (427)
232 KOG2111 Uncharacterized conser 99.0 5.2E-08 1.1E-12 101.4 22.3 178 57-283 75-259 (346)
233 PF10282 Lactonase: Lactonase, 99.0 1.3E-05 2.9E-10 91.6 43.4 149 98-281 13-175 (345)
234 PF02239 Cytochrom_D1: Cytochr 99.0 6.8E-07 1.5E-11 102.1 31.5 107 90-216 8-116 (369)
235 PF08662 eIF2A: Eukaryotic tra 99.0 6.4E-08 1.4E-12 100.2 20.5 151 39-212 9-183 (194)
236 KOG2139 WD40 repeat protein [G 98.9 3.2E-08 6.9E-13 104.2 17.7 192 37-280 100-309 (445)
237 KOG1272 WD40-repeat-containing 98.9 3.3E-09 7.2E-14 114.9 10.4 195 37-283 131-326 (545)
238 PF08662 eIF2A: Eukaryotic tra 98.9 2.4E-08 5.3E-13 103.3 16.2 110 35-147 59-179 (194)
239 PRK04922 tolB translocation pr 98.9 1.4E-07 3E-12 111.4 24.8 175 57-282 184-370 (433)
240 KOG2321 WD40 repeat protein [G 98.9 3E-08 6.5E-13 110.1 17.4 201 34-282 132-345 (703)
241 COG5354 Uncharacterized protei 98.9 7.6E-07 1.7E-11 98.2 27.3 161 34-213 31-215 (561)
242 PF04762 IKI3: IKI3 family; I 98.9 2.8E-05 6.1E-10 98.5 45.1 233 490-799 216-457 (928)
243 KOG2041 WD40 repeat protein [G 98.9 3.4E-06 7.3E-11 96.0 32.6 215 30-282 7-249 (1189)
244 TIGR02800 propeller_TolB tol-p 98.9 4.8E-07 1.1E-11 106.8 27.1 177 57-282 170-356 (417)
245 TIGR02800 propeller_TolB tol-p 98.9 2E-07 4.3E-12 110.2 23.8 189 34-272 188-386 (417)
246 KOG3881 Uncharacterized conser 98.9 4.2E-08 9.1E-13 104.7 15.5 165 492-708 158-328 (412)
247 KOG1409 Uncharacterized conser 98.9 6E-08 1.3E-12 101.7 16.2 206 27-282 60-272 (404)
248 KOG2041 WD40 repeat protein [G 98.8 2.4E-05 5.2E-10 89.3 35.7 122 117-280 14-145 (1189)
249 PRK04792 tolB translocation pr 98.8 5.8E-07 1.3E-11 106.2 23.9 161 35-213 217-387 (448)
250 KOG1310 WD40 repeat protein [G 98.8 7.2E-08 1.6E-12 106.4 14.6 181 71-280 45-231 (758)
251 PRK00178 tolB translocation pr 98.8 9.3E-07 2E-11 104.7 25.3 164 33-214 196-369 (430)
252 KOG0974 WD-repeat protein WDR6 98.8 1.7E-05 3.6E-10 95.2 34.5 152 78-281 89-247 (967)
253 PRK01029 tolB translocation pr 98.8 9.5E-07 2.1E-11 103.5 24.2 197 37-282 186-405 (428)
254 PRK00178 tolB translocation pr 98.8 1.8E-06 3.9E-11 102.3 26.8 176 58-282 180-365 (430)
255 KOG2315 Predicted translation 98.7 2.3E-05 5E-10 88.0 32.3 142 50-214 5-160 (566)
256 KOG3881 Uncharacterized conser 98.7 4.7E-07 1E-11 96.9 18.1 187 47-282 115-322 (412)
257 KOG2314 Translation initiation 98.7 3.5E-06 7.7E-11 93.7 25.1 104 39-145 214-332 (698)
258 TIGR03300 assembly_YfgL outer 98.7 3.4E-05 7.3E-10 89.7 34.6 213 26-282 40-261 (377)
259 TIGR03300 assembly_YfgL outer 98.7 2.9E-05 6.4E-10 90.2 33.7 108 88-217 65-172 (377)
260 PF10282 Lactonase: Lactonase, 98.7 4.1E-05 8.8E-10 87.6 33.9 212 32-280 33-275 (345)
261 KOG1409 Uncharacterized conser 98.7 7.6E-07 1.7E-11 93.6 17.4 116 71-201 19-137 (404)
262 PRK04792 tolB translocation pr 98.7 1.7E-06 3.6E-11 102.3 22.8 176 58-282 199-384 (448)
263 KOG4547 WD40 repeat-containing 98.6 6.8E-07 1.5E-11 100.7 16.8 162 493-700 3-220 (541)
264 KOG3914 WD repeat protein WDR4 98.6 2.4E-07 5.3E-12 99.6 11.7 158 39-215 66-230 (390)
265 KOG1354 Serine/threonine prote 98.6 7E-07 1.5E-11 93.7 13.4 220 37-282 27-303 (433)
266 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00041 8.9E-09 77.6 35.5 106 98-216 27-144 (352)
267 KOG3914 WD repeat protein WDR4 98.5 8.7E-07 1.9E-11 95.5 13.3 161 490-708 69-231 (390)
268 COG4946 Uncharacterized protei 98.5 0.00027 5.8E-09 77.7 31.7 150 46-216 331-485 (668)
269 KOG1064 RAVE (regulator of V-A 98.5 2.1E-07 4.6E-12 115.5 9.0 157 490-708 2215-2374(2439)
270 COG4946 Uncharacterized protei 98.5 0.0039 8.5E-08 68.8 42.0 148 494-706 331-483 (668)
271 KOG1064 RAVE (regulator of V-A 98.5 4.8E-07 1E-11 112.5 11.4 192 37-288 2210-2406(2439)
272 KOG1354 Serine/threonine prote 98.5 7.6E-06 1.6E-10 86.1 18.5 118 496-638 227-364 (433)
273 COG2706 3-carboxymuconate cycl 98.5 0.00029 6.3E-09 75.8 30.6 262 31-353 35-325 (346)
274 KOG4547 WD40 repeat-containing 98.5 9.8E-06 2.1E-10 91.6 19.7 186 44-281 2-221 (541)
275 PLN02919 haloacid dehalogenase 98.5 0.00033 7.1E-09 90.8 36.4 230 28-282 494-772 (1057)
276 COG2706 3-carboxymuconate cycl 98.4 0.00012 2.7E-09 78.6 26.4 226 17-281 64-322 (346)
277 PLN02919 haloacid dehalogenase 98.4 6.4E-05 1.4E-09 97.2 28.0 227 37-283 625-891 (1057)
278 TIGR02658 TTQ_MADH_Hv methylam 98.4 9.3E-05 2E-09 82.7 25.2 202 43-283 53-333 (352)
279 PF15492 Nbas_N: Neuroblastoma 98.4 7.1E-05 1.5E-09 78.0 21.4 99 39-137 47-167 (282)
280 KOG4714 Nucleoporin [Nuclear s 98.3 6.5E-06 1.4E-10 83.6 11.3 159 489-706 95-259 (319)
281 KOG2066 Vacuolar assembly/sort 98.3 1.6E-05 3.6E-10 92.7 15.8 189 36-280 40-233 (846)
282 PRK04043 tolB translocation pr 98.3 0.00016 3.5E-09 84.3 24.4 158 37-214 189-363 (419)
283 PF11768 DUF3312: Protein of u 98.2 0.0066 1.4E-07 69.9 35.7 116 508-658 239-367 (545)
284 COG5170 CDC55 Serine/threonine 98.2 9.7E-06 2.1E-10 84.0 11.5 218 36-283 27-312 (460)
285 KOG4714 Nucleoporin [Nuclear s 98.2 1.8E-05 4E-10 80.4 13.2 210 41-278 95-316 (319)
286 KOG4532 WD40-like repeat conta 98.2 4.7E-05 1E-09 77.8 15.7 151 498-703 131-285 (344)
287 PRK01029 tolB translocation pr 98.2 0.00011 2.4E-09 86.2 21.3 164 35-216 230-411 (428)
288 PF00400 WD40: WD domain, G-be 98.2 6.2E-06 1.3E-10 60.7 6.8 38 594-631 2-39 (39)
289 KOG0280 Uncharacterized conser 98.2 0.00028 6.1E-09 73.4 20.8 184 55-282 44-243 (339)
290 PRK11138 outer membrane biogen 98.2 0.0032 6.9E-08 73.6 32.7 109 88-217 69-187 (394)
291 PRK04043 tolB translocation pr 98.1 0.0011 2.3E-08 77.4 28.1 138 57-213 169-314 (419)
292 KOG3621 WD40 repeat-containing 98.1 3.4E-05 7.3E-10 89.1 14.7 143 484-657 34-179 (726)
293 KOG3617 WD40 and TPR repeat-co 98.1 0.00035 7.6E-09 81.6 22.4 73 35-107 59-132 (1416)
294 KOG2114 Vacuolar assembly/sort 98.1 0.00011 2.4E-09 86.5 18.6 158 37-211 27-204 (933)
295 KOG0280 Uncharacterized conser 98.1 5.1E-05 1.1E-09 78.6 13.3 155 38-210 124-286 (339)
296 KOG2315 Predicted translation 98.1 0.00029 6.2E-09 79.5 19.8 195 34-282 164-392 (566)
297 PF00957 Synaptobrevin: Synapt 98.0 6.8E-06 1.5E-10 73.1 5.3 49 1053-1101 14-62 (89)
298 KOG0860 Synaptobrevin/VAMP-lik 98.0 5.3E-06 1.1E-10 74.0 4.2 51 1053-1107 40-90 (116)
299 KOG4190 Uncharacterized conser 98.0 1.9E-05 4E-10 87.4 9.2 176 481-707 733-913 (1034)
300 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.016 3.5E-07 59.6 28.6 107 89-215 24-130 (354)
301 PRK11138 outer membrane biogen 98.0 0.015 3.3E-07 67.9 33.1 175 23-216 41-231 (394)
302 KOG2695 WD40 repeat protein [G 97.9 2.4E-05 5.2E-10 82.6 8.2 153 502-708 231-384 (425)
303 KOG4190 Uncharacterized conser 97.9 2.1E-05 4.5E-10 87.0 7.7 210 26-282 726-950 (1034)
304 COG5354 Uncharacterized protei 97.9 0.025 5.5E-07 63.5 30.6 77 534-638 272-353 (561)
305 KOG2314 Translation initiation 97.9 0.0045 9.8E-08 69.8 24.6 113 78-209 212-335 (698)
306 KOG3621 WD40 repeat-containing 97.9 0.0001 2.2E-09 85.2 12.1 115 34-148 32-155 (726)
307 KOG3617 WD40 and TPR repeat-co 97.8 0.00083 1.8E-08 78.6 19.0 111 38-149 18-133 (1416)
308 KOG1920 IkappaB kinase complex 97.8 0.084 1.8E-06 65.6 35.6 215 35-282 18-276 (1265)
309 KOG1645 RING-finger-containing 97.8 0.0013 2.9E-08 71.3 18.3 78 177-285 194-271 (463)
310 PF13360 PQQ_2: PQQ-like domai 97.8 0.0038 8.2E-08 67.2 22.3 194 45-283 34-233 (238)
311 PF11768 DUF3312: Protein of u 97.8 0.0025 5.5E-08 73.2 21.2 107 177-317 260-367 (545)
312 KOG4532 WD40-like repeat conta 97.8 0.0015 3.3E-08 67.1 17.2 154 49-214 130-288 (344)
313 PF15492 Nbas_N: Neuroblastoma 97.7 0.0023 5.1E-08 67.0 18.6 189 490-705 50-264 (282)
314 PF00400 WD40: WD domain, G-be 97.7 6.3E-05 1.4E-09 55.3 5.3 34 531-564 6-39 (39)
315 KOG2695 WD40 repeat protein [G 97.7 0.00015 3.2E-09 76.8 9.5 166 32-216 209-384 (425)
316 COG5170 CDC55 Serine/threonine 97.7 0.0012 2.5E-08 69.0 15.3 92 117-212 26-121 (460)
317 PF08450 SGL: SMP-30/Gluconola 97.7 0.025 5.4E-07 61.3 26.9 190 32-269 37-244 (246)
318 KOG1645 RING-finger-containing 97.7 0.0031 6.8E-08 68.5 18.7 84 71-154 188-273 (463)
319 PF03178 CPSF_A: CPSF A subuni 97.6 0.0063 1.4E-07 68.9 22.6 144 47-209 42-203 (321)
320 KOG0309 Conserved WD40 repeat- 97.6 0.00031 6.7E-09 81.0 10.8 122 28-149 107-234 (1081)
321 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.14 2.9E-06 53.1 28.5 64 189-282 62-125 (354)
322 KOG0882 Cyclophilin-related pe 97.5 0.0031 6.6E-08 69.4 15.9 141 497-638 158-310 (558)
323 KOG0309 Conserved WD40 repeat- 97.5 0.0016 3.4E-08 75.5 13.9 164 30-210 62-234 (1081)
324 PF08450 SGL: SMP-30/Gluconola 97.4 0.073 1.6E-06 57.6 26.5 192 39-280 3-213 (246)
325 KOG2066 Vacuolar assembly/sort 97.4 0.0083 1.8E-07 70.9 19.1 139 495-708 49-195 (846)
326 PF07433 DUF1513: Protein of u 97.3 0.099 2.1E-06 56.8 24.8 103 34-136 3-117 (305)
327 KOG0882 Cyclophilin-related pe 97.3 0.0018 3.8E-08 71.2 11.4 215 33-286 7-237 (558)
328 PF13360 PQQ_2: PQQ-like domai 97.2 0.026 5.6E-07 60.7 20.2 145 56-216 2-148 (238)
329 PF08596 Lgl_C: Lethal giant l 97.2 0.046 1E-06 62.9 22.9 205 37-282 3-292 (395)
330 KOG1832 HIV-1 Vpr-binding prot 97.2 0.00026 5.7E-09 83.0 4.3 169 24-216 1091-1263(1516)
331 PF00780 CNH: CNH domain; Int 97.1 0.12 2.6E-06 57.0 24.4 158 492-704 4-169 (275)
332 PF06977 SdiA-regulated: SdiA- 97.1 0.1 2.2E-06 55.8 21.7 176 30-215 16-207 (248)
333 PRK02888 nitrous-oxide reducta 97.0 0.019 4.2E-07 67.9 17.4 159 43-209 200-405 (635)
334 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.027 5.9E-07 51.1 14.2 99 38-141 2-108 (111)
335 PF04841 Vps16_N: Vps16, N-ter 97.0 0.16 3.5E-06 59.3 24.5 68 41-109 34-112 (410)
336 KOG1920 IkappaB kinase complex 97.0 0.048 1E-06 67.6 20.0 200 36-282 69-324 (1265)
337 KOG1275 PAB-dependent poly(A) 96.9 0.016 3.5E-07 69.2 15.0 181 46-278 146-340 (1118)
338 KOG4640 Anaphase-promoting com 96.9 0.0041 8.8E-08 71.6 9.5 94 537-658 21-115 (665)
339 PF00780 CNH: CNH domain; Int 96.9 0.041 8.8E-07 60.8 17.5 150 44-216 4-173 (275)
340 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.28 6E-06 56.3 24.8 101 44-145 1-129 (353)
341 PF07433 DUF1513: Protein of u 96.8 0.13 2.7E-06 56.0 20.1 161 41-215 56-254 (305)
342 KOG1897 Damage-specific DNA bi 96.7 2.7 5.8E-05 51.9 44.3 138 58-211 471-616 (1096)
343 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.091 2E-06 47.8 14.8 102 79-203 2-109 (111)
344 KOG2079 Vacuolar assembly/sort 96.7 0.019 4.1E-07 70.1 13.3 93 538-657 89-181 (1206)
345 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0058 1.3E-07 46.5 5.8 43 26-68 2-44 (47)
346 smart00320 WD40 WD40 repeats. 96.6 0.006 1.3E-07 43.2 5.9 37 595-631 4-40 (40)
347 KOG1275 PAB-dependent poly(A) 96.6 0.022 4.7E-07 68.2 13.2 150 38-206 180-340 (1118)
348 PF06433 Me-amine-dh_H: Methyl 96.6 1.3 2.9E-05 48.9 25.8 57 626-707 270-327 (342)
349 cd00216 PQQ_DH Dehydrogenases 96.5 1.4 3.1E-05 52.9 28.1 69 623-708 364-432 (488)
350 PF14727 PHTB1_N: PTHB1 N-term 96.5 2.6 5.6E-05 48.8 30.3 289 493-900 35-365 (418)
351 KOG0859 Synaptobrevin/VAMP-lik 96.4 0.0018 3.9E-08 63.3 2.5 66 1035-1107 121-186 (217)
352 KOG4640 Anaphase-promoting com 96.4 0.012 2.6E-07 67.8 9.4 94 33-126 18-114 (665)
353 COG3204 Uncharacterized protei 96.4 0.38 8.1E-06 51.3 19.4 178 75-281 84-264 (316)
354 COG0823 TolB Periplasmic compo 96.4 0.062 1.3E-06 62.5 15.0 154 40-211 197-361 (425)
355 KOG2079 Vacuolar assembly/sort 96.3 0.085 1.8E-06 64.7 16.2 101 46-148 98-204 (1206)
356 PF06977 SdiA-regulated: SdiA- 96.2 0.4 8.8E-06 51.3 19.2 175 76-280 21-201 (248)
357 KOG1897 Damage-specific DNA bi 96.2 5 0.00011 49.7 57.4 121 538-704 489-619 (1096)
358 KOG1832 HIV-1 Vpr-binding prot 96.1 0.0036 7.8E-08 73.9 3.3 126 474-638 1092-1219(1516)
359 cd00216 PQQ_DH Dehydrogenases 96.1 4.9 0.00011 48.3 31.7 115 88-217 61-192 (488)
360 KOG1008 Uncharacterized conser 96.0 0.0021 4.4E-08 73.8 0.4 198 38-281 59-276 (783)
361 PF04053 Coatomer_WDAD: Coatom 95.9 0.48 1E-05 55.5 19.1 56 91-148 119-174 (443)
362 KOG2114 Vacuolar assembly/sort 95.7 0.24 5.3E-06 59.5 15.9 112 35-147 125-243 (933)
363 PRK13616 lipoprotein LpqB; Pro 95.7 0.38 8.3E-06 58.5 18.2 153 36-207 350-524 (591)
364 PF04053 Coatomer_WDAD: Coatom 95.7 0.12 2.5E-06 60.5 13.3 142 35-208 32-173 (443)
365 PF08553 VID27: VID27 cytoplas 95.7 0.23 5E-06 61.2 16.3 139 95-280 501-647 (794)
366 PF03178 CPSF_A: CPSF A subuni 95.7 0.78 1.7E-05 51.9 19.7 120 24-148 77-203 (321)
367 COG0823 TolB Periplasmic compo 95.4 0.45 9.8E-06 55.5 16.7 124 71-212 187-318 (425)
368 PF04841 Vps16_N: Vps16, N-ter 95.2 2 4.4E-05 50.1 21.5 40 596-636 73-112 (410)
369 PF12894 Apc4_WD40: Anaphase-p 95.2 0.052 1.1E-06 41.4 5.3 35 601-635 9-43 (47)
370 smart00320 WD40 WD40 repeats. 95.1 0.042 9.2E-07 38.6 4.7 33 72-104 8-40 (40)
371 COG3386 Gluconolactonase [Carb 95.1 1.4 3E-05 49.0 18.5 195 31-271 61-276 (307)
372 PF08553 VID27: VID27 cytoplas 94.9 2.2 4.7E-05 53.1 21.0 149 491-699 489-646 (794)
373 COG3391 Uncharacterized conser 94.9 4.6 0.0001 46.8 23.1 203 36-282 74-285 (381)
374 KOG1008 Uncharacterized conser 94.7 0.0094 2E-07 68.6 0.2 163 33-209 100-276 (783)
375 PF05096 Glu_cyclase_2: Glutam 94.6 5.4 0.00012 42.7 20.3 177 22-217 29-212 (264)
376 COG3391 Uncharacterized conser 94.3 7.7 0.00017 44.9 23.1 159 37-213 32-195 (381)
377 KOG3630 Nuclear pore complex, 94.3 0.41 8.8E-06 59.3 12.5 150 40-208 46-228 (1405)
378 PF10647 Gmad1: Lipoprotein Lp 94.2 2.4 5.1E-05 46.0 17.6 149 37-200 25-187 (253)
379 PF10395 Utp8: Utp8 family; I 94.2 6.8 0.00015 47.4 22.3 111 540-700 31-159 (670)
380 PF06433 Me-amine-dh_H: Methyl 94.1 6.1 0.00013 43.9 20.1 204 40-283 99-323 (342)
381 PRK13616 lipoprotein LpqB; Pro 93.9 1.9 4.1E-05 52.6 17.7 185 56-280 328-525 (591)
382 KOG2444 WD40 repeat protein [G 93.8 0.18 3.8E-06 51.7 7.0 102 47-148 70-178 (238)
383 KOG2444 WD40 repeat protein [G 93.7 0.13 2.8E-06 52.6 5.9 109 91-218 33-142 (238)
384 PF02897 Peptidase_S9_N: Proly 93.4 19 0.00042 42.2 24.8 114 37-150 125-261 (414)
385 PF10647 Gmad1: Lipoprotein Lp 93.2 6.2 0.00013 42.8 18.6 112 78-206 25-142 (253)
386 PF14781 BBS2_N: Ciliary BBSom 93.2 3.8 8.3E-05 38.8 14.2 113 39-154 2-130 (136)
387 KOG4499 Ca2+-binding protein R 93.0 6.1 0.00013 40.8 16.3 53 188-269 221-273 (310)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 92.7 0.9 2E-05 52.3 11.6 126 541-701 6-147 (415)
389 COG3490 Uncharacterized protei 92.4 4 8.8E-05 43.3 14.6 54 42-95 120-180 (366)
390 COG3204 Uncharacterized protei 92.3 14 0.00031 39.8 18.7 180 23-211 71-266 (316)
391 PF14761 HPS3_N: Hermansky-Pud 92.2 6.6 0.00014 40.5 15.7 124 502-637 35-167 (215)
392 PRK02888 nitrous-oxide reducta 92.1 1.9 4.1E-05 51.7 13.3 92 57-148 296-405 (635)
393 PF10168 Nup88: Nuclear pore c 91.8 5.4 0.00012 49.7 17.6 75 34-108 83-181 (717)
394 PF10168 Nup88: Nuclear pore c 91.8 6.3 0.00014 49.1 18.2 121 503-636 40-182 (717)
395 PF14870 PSII_BNR: Photosynthe 91.7 8.1 0.00018 42.8 17.1 153 488-697 149-301 (302)
396 KOG2395 Protein involved in va 91.6 13 0.00029 42.9 18.6 141 497-699 348-499 (644)
397 COG3386 Gluconolactonase [Carb 91.3 6.3 0.00014 43.9 15.9 102 534-657 160-263 (307)
398 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.2 42 0.00091 40.7 35.8 113 88-216 69-197 (527)
399 PF14781 BBS2_N: Ciliary BBSom 91.1 5.9 0.00013 37.5 12.8 116 81-215 3-132 (136)
400 PF08728 CRT10: CRT10; InterP 90.7 3.9 8.4E-05 50.0 14.3 185 490-699 45-245 (717)
401 PF10979 DUF2786: Protein of u 90.6 0.15 3.3E-06 37.8 1.7 39 1063-1101 1-39 (43)
402 PF15390 DUF4613: Domain of un 90.4 6.7 0.00015 46.0 15.1 153 78-280 21-186 (671)
403 PF08728 CRT10: CRT10; InterP 89.0 17 0.00037 44.6 17.9 158 33-208 38-246 (717)
404 KOG2395 Protein involved in va 88.9 4.4 9.6E-05 46.7 12.0 199 35-280 276-500 (644)
405 PF14870 PSII_BNR: Photosynthe 88.2 47 0.001 36.9 20.3 159 73-277 141-301 (302)
406 PF10313 DUF2415: Uncharacteri 87.5 2 4.3E-05 31.8 5.5 32 604-635 1-35 (43)
407 COG3490 Uncharacterized protei 87.1 10 0.00022 40.5 12.5 57 543-623 120-181 (366)
408 PF07569 Hira: TUP1-like enhan 86.7 3.3 7.1E-05 43.7 9.1 64 84-148 18-96 (219)
409 TIGR03074 PQQ_membr_DH membran 86.5 1E+02 0.0022 39.0 37.2 122 88-217 194-353 (764)
410 KOG1896 mRNA cleavage and poly 86.2 9.7 0.00021 48.3 13.6 145 47-208 1046-1213(1366)
411 PHA02713 hypothetical protein; 86.1 7.6 0.00016 47.5 13.1 56 492-558 349-409 (557)
412 PF12234 Rav1p_C: RAVE protein 86.1 34 0.00075 41.7 18.1 75 603-699 29-103 (631)
413 KOG3630 Nuclear pore complex, 86.1 3.3 7.1E-05 51.8 9.6 148 37-201 102-265 (1405)
414 PLN00033 photosystem II stabil 86.0 35 0.00076 39.5 17.7 147 38-205 241-396 (398)
415 TIGR02604 Piru_Ver_Nterm putat 85.7 21 0.00045 41.1 15.9 95 36-132 14-138 (367)
416 PF13449 Phytase-like: Esteras 85.4 39 0.00085 38.2 17.6 116 34-150 18-193 (326)
417 PF05096 Glu_cyclase_2: Glutam 84.9 61 0.0013 34.9 19.2 153 491-706 52-209 (264)
418 PF08366 LLGL: LLGL2; InterPr 84.5 10 0.00022 34.4 9.7 67 327-405 29-99 (105)
419 PRK13684 Ycf48-like protein; P 84.3 30 0.00064 39.3 16.0 117 536-700 214-331 (334)
420 KOG1916 Nuclear protein, conta 84.0 2.8 6.1E-05 51.0 7.5 107 505-632 153-264 (1283)
421 PF05694 SBP56: 56kDa selenium 84.0 22 0.00047 40.9 14.1 172 33-210 130-344 (461)
422 KOG2280 Vacuolar assembly/sort 83.9 14 0.0003 44.7 13.0 197 472-708 24-254 (829)
423 PF14761 HPS3_N: Hermansky-Pud 83.9 16 0.00034 37.8 11.9 117 89-212 29-167 (215)
424 TIGR03075 PQQ_enz_alc_DH PQQ-d 83.7 32 0.00069 41.7 16.8 123 31-155 296-496 (527)
425 PF00930 DPPIV_N: Dipeptidyl p 83.4 90 0.0019 35.7 21.3 78 78-155 185-274 (353)
426 KOG4499 Ca2+-binding protein R 82.8 40 0.00087 35.1 14.1 101 540-657 161-262 (310)
427 KOG2280 Vacuolar assembly/sort 82.6 1.1E+02 0.0025 37.4 19.7 76 601-701 81-156 (829)
428 PRK13684 Ycf48-like protein; P 82.2 45 0.00098 37.8 16.4 154 33-207 170-330 (334)
429 PF11715 Nup160: Nucleoporin N 82.1 5.8 0.00013 48.6 9.9 71 45-115 156-257 (547)
430 PF12234 Rav1p_C: RAVE protein 82.0 19 0.00041 43.8 13.6 75 30-105 25-103 (631)
431 PF07569 Hira: TUP1-like enhan 81.8 7.7 0.00017 40.9 9.3 65 43-108 18-97 (219)
432 PF12768 Rax2: Cortical protei 81.6 23 0.00051 38.7 13.1 124 556-726 14-147 (281)
433 PRK10115 protease 2; Provision 81.3 1.6E+02 0.0035 37.1 25.1 110 36-146 127-254 (686)
434 TIGR03118 PEPCTERM_chp_1 conse 80.7 94 0.002 34.1 19.9 120 19-145 13-168 (336)
435 PF12657 TFIIIC_delta: Transcr 80.4 5.1 0.00011 40.6 7.1 35 650-700 87-121 (173)
436 PF12768 Rax2: Cortical protei 80.2 62 0.0013 35.5 15.8 120 506-659 17-147 (281)
437 PF14655 RAB3GAP2_N: Rab3 GTPa 80.1 15 0.00033 42.5 11.5 108 595-708 299-406 (415)
438 PF14583 Pectate_lyase22: Olig 80.1 1.2E+02 0.0025 34.8 26.0 95 66-163 20-123 (386)
439 PF14583 Pectate_lyase22: Olig 79.4 1.2E+02 0.0027 34.6 21.7 77 42-118 42-122 (386)
440 KOG1898 Splicing factor 3b, su 78.7 54 0.0012 41.5 15.8 145 38-204 880-1044(1205)
441 KOG4460 Nuclear pore complex, 78.5 39 0.00084 39.2 13.6 91 119-215 105-205 (741)
442 PHA02713 hypothetical protein; 78.5 70 0.0015 39.1 17.4 23 260-282 511-535 (557)
443 KOG4441 Proteins containing BT 78.1 36 0.00078 41.7 14.6 110 492-638 378-504 (571)
444 KOG1983 Tomosyn and related SN 77.3 52 0.0011 43.0 16.4 34 114-147 32-65 (993)
445 PF15390 DUF4613: Domain of un 76.6 1.1E+02 0.0023 36.6 16.7 151 36-210 20-188 (671)
446 PF10313 DUF2415: Uncharacteri 76.1 6.3 0.00014 29.3 4.5 30 36-65 1-33 (43)
447 TIGR03074 PQQ_membr_DH membran 75.9 2.3E+02 0.005 36.0 23.5 72 47-118 194-290 (764)
448 PHA02790 Kelch-like protein; P 75.6 57 0.0012 39.1 15.4 65 492-567 316-385 (480)
449 PF02333 Phytase: Phytase; In 74.6 1.6E+02 0.0036 33.6 18.6 181 17-210 78-292 (381)
450 PF14727 PHTB1_N: PTHB1 N-term 74.5 1.8E+02 0.0039 34.0 29.4 154 88-281 37-205 (418)
451 PHA03098 kelch-like protein; P 74.4 48 0.001 40.4 14.7 26 493-518 341-371 (534)
452 KOG4460 Nuclear pore complex, 72.7 48 0.001 38.6 12.4 91 537-643 104-208 (741)
453 PF05935 Arylsulfotrans: Aryls 72.6 1.3E+02 0.0027 36.1 17.2 163 49-218 117-311 (477)
454 PF14779 BBS1: Ciliary BBSome 72.2 24 0.00053 37.7 9.6 74 602-697 175-255 (257)
455 PF11635 Med16: Mediator compl 71.5 2.9E+02 0.0064 35.2 22.7 103 537-639 181-295 (753)
456 PF01011 PQQ: PQQ enzyme repea 71.3 5.9 0.00013 28.6 3.4 23 684-706 2-24 (38)
457 smart00036 CNH Domain found in 71.0 1.3E+02 0.0028 33.6 15.8 60 46-106 12-73 (302)
458 PF02897 Peptidase_S9_N: Proly 70.8 2.1E+02 0.0046 33.3 28.0 112 489-635 129-262 (414)
459 TIGR03118 PEPCTERM_chp_1 conse 70.8 1.7E+02 0.0037 32.2 15.8 162 36-213 77-284 (336)
460 PLN00033 photosystem II stabil 69.8 2.2E+02 0.0048 33.1 22.2 149 81-277 243-396 (398)
461 PHA03098 kelch-like protein; P 69.8 1.3E+02 0.0029 36.5 17.1 23 87-109 342-369 (534)
462 KOG4441 Proteins containing BT 68.3 1.8E+02 0.0039 35.7 17.3 55 87-141 380-440 (571)
463 KOG1916 Nuclear protein, conta 67.9 3.3 7.1E-05 50.5 2.3 63 43-105 191-264 (1283)
464 PF13449 Phytase-like: Esteras 66.8 2.3E+02 0.0049 32.0 18.1 119 76-199 19-167 (326)
465 smart00564 PQQ beta-propeller 66.7 7.7 0.00017 26.6 3.2 24 682-705 6-29 (33)
466 TIGR02604 Piru_Ver_Nterm putat 66.2 1.5E+02 0.0033 34.0 15.7 60 78-139 15-91 (367)
467 PF07995 GSDH: Glucose / Sorbo 62.8 2.7E+02 0.0058 31.5 26.0 60 494-560 270-329 (331)
468 KOG2377 Uncharacterized conser 61.1 1.6E+02 0.0034 34.0 13.3 155 39-214 26-191 (657)
469 KOG1900 Nuclear pore complex, 59.9 85 0.0018 40.9 12.3 153 54-209 96-273 (1311)
470 KOG1900 Nuclear pore complex, 58.8 86 0.0019 40.9 12.1 146 502-701 96-273 (1311)
471 COG5167 VID27 Protein involved 58.6 23 0.0005 40.8 6.5 59 46-105 572-631 (776)
472 TIGR02276 beta_rpt_yvtn 40-res 58.1 37 0.00081 24.5 5.8 39 86-124 1-40 (42)
473 KOG3616 Selective LIM binding 58.1 1.4E+02 0.0029 36.4 12.7 70 35-106 14-83 (1636)
474 PF10214 Rrn6: RNA polymerase 56.0 3.7E+02 0.008 34.4 17.7 135 74-213 77-237 (765)
475 COG5276 Uncharacterized conser 55.1 3.2E+02 0.0069 29.9 19.4 167 27-217 36-208 (370)
476 KOG2063 Vacuolar assembly/sort 54.3 1.4E+02 0.0031 38.0 13.0 70 41-111 20-101 (877)
477 PF10214 Rrn6: RNA polymerase 53.9 3.9E+02 0.0085 34.2 17.5 86 175-282 144-234 (765)
478 PF07995 GSDH: Glucose / Sorbo 53.4 1.2E+02 0.0027 34.2 11.7 50 37-87 3-59 (331)
479 PF12341 DUF3639: Protein of u 53.1 26 0.00057 23.2 3.5 25 37-63 3-27 (27)
480 PF11635 Med16: Mediator compl 51.3 5E+02 0.011 33.2 17.7 34 249-283 259-292 (753)
481 COG5290 IkappaB kinase complex 50.9 29 0.00064 42.1 6.0 136 38-191 204-351 (1243)
482 COG5167 VID27 Protein involved 50.3 4.9E+02 0.011 30.7 15.5 147 85-280 476-632 (776)
483 PF11715 Nup160: Nucleoporin N 49.9 1.1E+02 0.0024 37.4 11.4 98 546-644 156-259 (547)
484 COG4590 ABC-type uncharacteriz 48.8 77 0.0017 36.2 8.5 161 76-282 220-388 (733)
485 PHA02790 Kelch-like protein; P 48.7 5.5E+02 0.012 30.8 17.6 93 46-139 271-373 (480)
486 KOG2377 Uncharacterized conser 48.1 92 0.002 35.7 9.0 101 35-137 66-173 (657)
487 PF12657 TFIIIC_delta: Transcr 47.9 74 0.0016 32.1 7.9 32 604-635 86-123 (173)
488 PRK13615 lipoprotein LpqB; Pro 45.1 6.6E+02 0.014 30.7 20.9 143 39-196 337-487 (557)
489 COG1520 FOG: WD40-like repeat 44.8 5.3E+02 0.012 29.5 16.6 69 617-708 155-225 (370)
490 PF13570 PQQ_3: PQQ-like domai 42.9 31 0.00066 25.0 3.1 20 682-701 21-40 (40)
491 PF14779 BBS1: Ciliary BBSome 42.5 1.4E+02 0.003 32.2 9.0 70 75-144 175-255 (257)
492 PF07676 PD40: WD40-like Beta 42.5 80 0.0017 22.5 5.3 31 600-630 5-38 (39)
493 PF08801 Nucleoporin_N: Nup133 40.2 5.3E+02 0.012 30.2 14.8 22 679-700 198-219 (422)
494 TIGR02276 beta_rpt_yvtn 40-res 40.1 1.2E+02 0.0027 21.7 6.1 31 613-643 1-32 (42)
495 PF10395 Utp8: Utp8 family; I 39.4 8.4E+02 0.018 30.3 23.7 80 26-105 60-158 (670)
496 KOG2247 WD40 repeat-containing 39.2 6.7 0.00015 44.9 -1.3 110 34-144 73-185 (615)
497 PF14269 Arylsulfotran_2: Aryl 38.8 3.3E+02 0.0071 30.3 11.8 81 623-705 94-178 (299)
498 COG4575 ElaB Uncharacterized c 38.4 40 0.00087 30.3 3.6 57 1023-1090 23-79 (104)
499 PF08801 Nucleoporin_N: Nup133 38.2 2.5E+02 0.0055 32.9 11.7 32 177-210 190-221 (422)
500 COG4590 ABC-type uncharacteriz 38.1 1.2E+02 0.0027 34.7 8.0 157 32-210 217-388 (733)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-41 Score=374.18 Aligned_cols=542 Identities=13% Similarity=0.183 Sum_probs=380.0
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCC-CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~-h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~ 112 (1108)
+..+++++++||+.+|.++...+.+++|.++...++ .+.. |++||--++|.|.+..|++++.|+.++|||+..+.+++
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 456899999999999999999999999999877655 3444 99999999999999999999999999999999999998
Q ss_pred ee-cCCCCeeEEEEecCCC--EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 113 CL-KWESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 113 ~~-~~~~~Itsl~~~~~~~--~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
.+ +|++.|.++.|.|+.+ .|++|..|+.|++|++......+ ..+..|. ..|+++.|.+ +
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl----~~~~~H~------------S~vtsL~~~~--d 203 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCL----HTMILHK------------SAVTSLAFSE--D 203 (775)
T ss_pred EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHH----HHHHhhh------------hheeeeeecc--C
Confidence 88 6899999999999864 58999999999999998533212 1244554 7899999987 5
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC-----CCE
Q 001279 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-----GSI 264 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd-----g~~ 264 (1108)
+..+++++.|..|.|||+.+-+......- ...+.++.+. ++ |.+
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~------------------------------ye~~E~vv~l-~~~~~~~~~~ 252 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPL------------------------------YESLESVVRL-REELGGKGEY 252 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheech------------------------------hhheeeEEEe-chhcCCcceE
Confidence 77799999999999999966544322211 2345555544 44 679
Q ss_pred EEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCce-EEEEeCCCCCCcceE
Q 001279 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR-LFVYGGDEIGSEEVL 343 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~-llv~gg~~~~~~~~l 343 (1108)
+++.+.+|.+++||.+++.....+...... .+..+ ......++ ++++..+.
T Consensus 253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~--------------e~~~~-------~~~~~~~~~l~vtaeQn------- 304 (775)
T KOG0319|consen 253 IITAGGSGVVQYWDSESGKCVYKQRQSDSE--------------EIDHL-------LAIESMSQLLLVTAEQN------- 304 (775)
T ss_pred EEEecCCceEEEEecccchhhhhhccCCch--------------hhhcc-------eeccccCceEEEEccce-------
Confidence 999999999999999877533221111000 01100 00111222 23333222
Q ss_pred EEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCC
Q 001279 344 TVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCP 423 (1108)
Q Consensus 344 tvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~ 423 (1108)
++.++..+. ...+.-.+.+..|.||.+.-. +...+++.++.+++.+|+.....+.
T Consensus 305 -l~l~d~~~l-----~i~k~ivG~ndEI~Dm~~lG~-------e~~~laVATNs~~lr~y~~~~~~c~------------ 359 (775)
T KOG0319|consen 305 -LFLYDEDEL-----TIVKQIVGYNDEILDMKFLGP-------EESHLAVATNSPELRLYTLPTSYCQ------------ 359 (775)
T ss_pred -EEEEEcccc-----EEehhhcCCchhheeeeecCC-------ccceEEEEeCCCceEEEecCCCceE------------
Confidence 121111110 011233455668899988764 3457899999999999874333222
Q ss_pred ccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEec
Q 001279 424 VEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYH 503 (1108)
Q Consensus 424 ~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~ 503 (1108)
+..||...+..+.....+-+|+||+.
T Consensus 360 ------------------------------------------------------ii~GH~e~vlSL~~~~~g~llat~sK 385 (775)
T KOG0319|consen 360 ------------------------------------------------------IIPGHTEAVLSLDVWSSGDLLATGSK 385 (775)
T ss_pred ------------------------------------------------------EEeCchhheeeeeecccCcEEEEecC
Confidence 22233333333344566679999999
Q ss_pred CCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC-CeEEEEecCceEEEEEecCCCCCccccccccCcc
Q 001279 504 DGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKS 582 (1108)
Q Consensus 504 DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~-~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~ 582 (1108)
|.+|++|.++.+....... ....+|...|.+++++..+ .+|++++.|+++++|.+...... .+
T Consensus 386 D~svilWr~~~~~~~~~~~-------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~-~~-------- 449 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCV-------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET-AF-------- 449 (775)
T ss_pred CceEEEEEecCCcchhhhh-------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc-cc--------
Confidence 9999999885554331111 1246999999999998765 58999999999999999883211 10
Q ss_pred ceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccC
Q 001279 583 EVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNT 662 (1108)
Q Consensus 583 ~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~ 662 (1108)
...+.+..+-..|...|.||+++|+.+++|+|+.|.+.+||++++..++ ..++||..+|.++.|++
T Consensus 450 -------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~---~vLsGH~RGvw~V~Fs~---- 515 (775)
T KOG0319|consen 450 -------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL---GVLSGHTRGVWCVSFSK---- 515 (775)
T ss_pred -------cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE---EEeeCCccceEEEEecc----
Confidence 0001122234579999999999999999999999999999999988877 68899999999999994
Q ss_pred ccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCCccccccchhh
Q 001279 663 HSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIAEPVCGFPIEKQAEQSAE 742 (1108)
Q Consensus 663 ~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1108)
...+|++++.|.+|.+|..+++.++.+. ++
T Consensus 516 ------------------~dq~laT~SgD~TvKIW~is~fSClkT~----------------eG---------------- 545 (775)
T KOG0319|consen 516 ------------------NDQLLATCSGDKTVKIWSISTFSCLKTF----------------EG---------------- 545 (775)
T ss_pred ------------------ccceeEeccCCceEEEEEeccceeeeee----------------cC----------------
Confidence 4788999999999999999998887654 11
Q ss_pred hhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC-eeEEEecccccccccceeeeecCCCcceeee
Q 001279 743 ENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQKVKHKNRCCWAS 821 (1108)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~-~~~v~sl~~~~~g~~~~~~k~~~~~~~~~~~ 821 (1108)
|.+.|....|-.. +..++.|+.| -+++|.+++ +.|++-..--..-.|+-
T Consensus 546 -----------------------H~~aVlra~F~~~--~~qliS~~adGliKlWnikt-----~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 546 -----------------------HTSAVLRASFIRN--GKQLISAGADGLIKLWNIKT-----NECEMTLDAHNDRVWAL 595 (775)
T ss_pred -----------------------ccceeEeeeeeeC--CcEEEeccCCCcEEEEeccc-----hhhhhhhhhccceeEEE
Confidence 2223333333222 4467777766 999999988 45554433224456775
Q ss_pred eeecCCceeEEEEEeecCcEEEe
Q 001279 822 TIEKDEKVCGLLLLFQTGAVQIR 844 (1108)
Q Consensus 822 ~~~~~~~~~~l~~~~~~G~i~i~ 844 (1108)
.... .....+.+-.||.|-.|
T Consensus 596 ~~~~--~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 596 SVSP--LLDMFVTGGGDGRIIFW 616 (775)
T ss_pred eecC--ccceeEecCCCeEEEEe
Confidence 4433 23355555666666666
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-40 Score=340.03 Aligned_cols=364 Identities=14% Similarity=0.231 Sum_probs=276.1
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~ 149 (1108)
.+.+|.++|-+++|+|+|.+|++++.|.++++||+.+...+.+. .|..-|.|++|+|++++||+|+.||+|++|+-..
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt- 188 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT- 188 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC-
Confidence 56789999999999999999999999999999999999887666 7889999999999999999999999999999554
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC---CCCEEEEEECCCeEEEEEccCCeEE-EEeCCCcccccc
Q 001279 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS---SGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKD 225 (1108)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~---~~~~ll~~~~dg~V~lWdl~~~~~~-~~~~~~~~~~~~ 225 (1108)
+... .-.+++|. .+|++++|+|-. ...+|++++.||.|+|||+..+.++ .+.||
T Consensus 189 -g~~~--g~~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH------- 246 (480)
T KOG0271|consen 189 -GQQI--GRALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH------- 246 (480)
T ss_pred -CCcc--cccccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-------
Confidence 2222 23367776 899999999842 3457999999999999999998764 56777
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccccc
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~ 305 (1108)
..+|||++|- - ..+|++|+.|++|++|+...+....... ..
T Consensus 247 -----------------------T~~VTCvrwG-G-~gliySgS~DrtIkvw~a~dG~~~r~lk------------GH-- 287 (480)
T KOG0271|consen 247 -----------------------TASVTCVRWG-G-EGLIYSGSQDRTIKVWRALDGKLCRELK------------GH-- 287 (480)
T ss_pred -----------------------ccceEEEEEc-C-CceEEecCCCceEEEEEccchhHHHhhc------------cc--
Confidence 8899999996 3 4589999999999999997653211100 00
Q ss_pred CCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCC
Q 001279 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1108)
Q Consensus 306 ~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~ 385 (1108)
.||.... +.+ .+. +++.
T Consensus 288 -------ahwvN~l--als----------Tdy-------~LRt------------------------------------- 304 (480)
T KOG0271|consen 288 -------AHWVNHL--ALS----------TDY-------VLRT------------------------------------- 304 (480)
T ss_pred -------chheeee--ecc----------chh-------hhhc-------------------------------------
Confidence 0222211 000 000 0000
Q ss_pred CCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhcccc
Q 001279 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1108)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1108)
| .||... ..+. +. .+.--+++.++-.
T Consensus 305 ------------g---af~~t~-----------~~~~----~~-------------------se~~~~Al~rY~~----- 330 (480)
T KOG0271|consen 305 ------------G---AFDHTG-----------RKPK----SF-------------------SEEQKKALERYEA----- 330 (480)
T ss_pred ------------c---cccccc-----------ccCC----Ch-------------------HHHHHHHHHHHHH-----
Confidence 0 000000 0000 00 0000011111111
Q ss_pred CCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCc-eeeEeeeccccceeeccCCCCCeEEEEE
Q 001279 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV-FKLICALDAEVQGIEVAGSRAPVSTLSF 544 (1108)
Q Consensus 466 ~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~-l~~~~~l~~~~~~~~l~~h~~~Vt~laf 544 (1108)
..-..++.+++|++|.++.+|+-.... +. ..+.+|..-|..+.|
T Consensus 331 ------------------------~~~~~~erlVSgsDd~tlflW~p~~~kkpi-----------~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 331 ------------------------VLKDSGERLVSGSDDFTLFLWNPFKSKKPI-----------TRMTGHQALVNHVSF 375 (480)
T ss_pred ------------------------hhccCcceeEEecCCceEEEecccccccch-----------hhhhchhhheeeEEE
Confidence 112233589999999999999865333 11 246799999999999
Q ss_pred EeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCC
Q 001279 545 CFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC 624 (1108)
Q Consensus 545 s~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~d 624 (1108)
|||++++|+++-|..|++|+-.++. .+.+|++|-++|..++||.|.++|++|+.|
T Consensus 376 SPd~r~IASaSFDkSVkLW~g~tGk-------------------------~lasfRGHv~~VYqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 376 SPDGRYIASASFDKSVKLWDGRTGK-------------------------FLASFRGHVAAVYQVAWSADSRLLVSGSKD 430 (480)
T ss_pred CCCccEEEEeecccceeeeeCCCcc-------------------------hhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence 9999999999999999999998873 467889999999999999999999999999
Q ss_pred CeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEe
Q 001279 625 GRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1108)
Q Consensus 625 G~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d 698 (1108)
.+++|||+++.++. .-++||.+.|.++.|+ |++..+++|++|.-+++|-
T Consensus 431 sTLKvw~V~tkKl~---~DLpGh~DEVf~vDws----------------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKLK---QDLPGHADEVFAVDWS----------------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeeec---ccCCCCCceEEEEEec----------------------CCCceeecCCCceEEEeec
Confidence 99999999999988 4779999999999999 7799999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-38 Score=351.16 Aligned_cols=488 Identities=16% Similarity=0.146 Sum_probs=350.3
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCC--CEEEEEeCCCcEEEEEcCCCee
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQ--GFLISITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~--~~L~S~s~d~~I~vWd~~s~~~ 110 (1108)
|.+++..++|+|.+.+||+|+.||+|++||+.+..++ .+.+|.+.|.++.|.|+. ..|+++..|+.+++||++.+..
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence 6778999999999999999999999999999877665 788899999999999975 4589999999999999996654
Q ss_pred -eeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 111 -ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 111 -~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
++.+ .|.+.|+++++.+++.-+++++.|..|.||++... +... .+|-. ..+.++.+-+..
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~--~~l~---~lp~y-------------e~~E~vv~l~~~ 245 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQY--KKLK---TLPLY-------------ESLESVVRLREE 245 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhh--hhhh---eechh-------------hheeeEEEechh
Confidence 5555 78899999999999999999999999999999431 1111 13321 335566664421
Q ss_pred C---CCEEEEEECCCeEEEEEccCCeEEEEeCCCc-ccccccccCCCCCCCCCcccCcC--CC-----------------
Q 001279 189 S---GNRVLIAYENALVILWDVSEAQIIFVGGGKD-LQLKDGVVDSPSEGDSTFLEGIS--EH----------------- 245 (1108)
Q Consensus 189 ~---~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~----------------- 245 (1108)
. +..+++++.+|.+++||.+++++.......+ .++..-++ .......+. .+
T Consensus 246 ~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~------~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 246 LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA------IESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred cCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhccee------ccccCceEEEEccceEEEEEccccEEehhh
Confidence 1 4579999999999999999987654322110 00000000 000000000 00
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCC
Q 001279 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNI 325 (1108)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~ 325 (1108)
..-..+|..+||..|+.++|++++..+.+++++..+.... +...|-....+++...
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------------------------ii~GH~e~vlSL~~~~ 375 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------------------------IIPGHTEAVLSLDVWS 375 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE------------------------EEeCchhheeeeeecc
Confidence 0015688999988899999999999999999987654210 1111222222334455
Q ss_pred CceEEEEeCCCCCCcceEEEEecccccc-ccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEe
Q 001279 326 DGRLFVYGGDEIGSEEVLTVLSLEWSSG-MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYD 404 (1108)
Q Consensus 326 ~~~llv~gg~~~~~~~~ltvl~l~~~~~-~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d 404 (1108)
.|.++++++.|. .+.+|.-++ ....-|. ....+....+..+...-. ....++..+.++.+.+|+
T Consensus 376 ~g~llat~sKD~-------svilWr~~~~~~~~~~~-a~~~gH~~svgava~~~~-------~asffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 376 SGDLLATGSKDK-------SVILWRLNNNCSKSLCV-AQANGHTNSVGAVAGSKL-------GASFFVSVSQDCTLKLWD 440 (775)
T ss_pred cCcEEEEecCCc-------eEEEEEecCCcchhhhh-hhhcccccccceeeeccc-------CccEEEEecCCceEEEec
Confidence 678999999997 777774421 1111111 112223334544444221 223455557778888887
Q ss_pred ccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCccc
Q 001279 405 NASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPS 484 (1108)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~ 484 (1108)
... ..+... +......+ ..--|.-
T Consensus 441 l~~------s~~~~~-~~~~~~~~-------------------------------------------------t~~aHdK 464 (775)
T KOG0319|consen 441 LPK------SKETAF-PIVLTCRY-------------------------------------------------TERAHDK 464 (775)
T ss_pred CCC------cccccc-cceehhhH-------------------------------------------------HHHhhcc
Confidence 433 000000 00000000 0112344
Q ss_pred CCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEE
Q 001279 485 PVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1108)
Q Consensus 485 ~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~ 564 (1108)
.+++++++|+..++|||++|.+.+||++....+. ..+.+|+..|+|+.|++.++.|++++.|++|+||.
T Consensus 465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~-----------~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL-----------GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred cccceEecCCCceEEecccccceeeecccCceEE-----------EEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 6677889999999999999999999999955544 45889999999999999999999999999999999
Q ss_pred ecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecC
Q 001279 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI 644 (1108)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~ 644 (1108)
+++. .|+.+|.+|...|.-+.|-.+++.|++++.||.|+||++.++.++ ..+
T Consensus 534 is~f-------------------------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~---~tl 585 (775)
T KOG0319|consen 534 ISTF-------------------------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE---MTL 585 (775)
T ss_pred eccc-------------------------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh---hhh
Confidence 9985 589999999999999999999999999999999999999999998 566
Q ss_pred CCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 645 ~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
..|.+.|++|.-++ ....+++|+.||.|.+|.-.|
T Consensus 586 D~H~DrvWaL~~~~----------------------~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 586 DAHNDRVWALSVSP----------------------LLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhccceeEEEeecC----------------------ccceeEecCCCeEEEEeecCc
Confidence 77999999999884 366799999999999998655
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-39 Score=331.06 Aligned_cols=359 Identities=14% Similarity=0.146 Sum_probs=263.9
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCee
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~ 110 (1108)
-||...|-|++|+|+++.||+|+.|.++|+||.++... ....+|..+|.+++|+|||..|+|++.||+|++||..+++.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 59999999999999999999999999999999977654 47788999999999999999999999999999999999977
Q ss_pred eee-e-cCCCCeeEEEEec-----CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 111 ACC-L-KWESNITAFSVIS-----GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 111 ~~~-~-~~~~~Itsl~~~~-----~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
+-. + .|...|++++|.| ..++|++++.||+|+||+... ++.. +.+.+|. .+|+||.
T Consensus 192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~--~~~~---~~lsgHT------------~~VTCvr 254 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL--GTCV---RTLSGHT------------ASVTCVR 254 (480)
T ss_pred ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC--ceEE---EEeccCc------------cceEEEE
Confidence 643 3 7899999999986 457999999999999999864 4444 5588887 8999999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCeEE-EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 184 PHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
| -.+| ++++|+.|++|++|+...|++. .+.|| ...|..++. +. .
T Consensus 255 w--GG~g-liySgS~DrtIkvw~a~dG~~~r~lkGH------------------------------ahwvN~lal-sT-d 299 (480)
T KOG0271|consen 255 W--GGEG-LIYSGSQDRTIKVWRALDGKLCRELKGH------------------------------AHWVNHLAL-ST-D 299 (480)
T ss_pred E--cCCc-eEEecCCCceEEEEEccchhHHHhhccc------------------------------chheeeeec-cc-h
Confidence 9 4345 5999999999999999888764 45666 233444441 11 1
Q ss_pred CEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcce
Q 001279 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1108)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ 342 (1108)
-.|-+|..|-+=+-....+ ........+ +. ......+..+|+|.++.
T Consensus 300 y~LRtgaf~~t~~~~~~~s--------e~~~~Al~r----Y~----------------~~~~~~~erlVSgsDd~----- 346 (480)
T KOG0271|consen 300 YVLRTGAFDHTGRKPKSFS--------EEQKKALER----YE----------------AVLKDSGERLVSGSDDF----- 346 (480)
T ss_pred hhhhccccccccccCCChH--------HHHHHHHHH----HH----------------HhhccCcceeEEecCCc-----
Confidence 1222222221100000000 000000000 00 01222334555555553
Q ss_pred EEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCC
Q 001279 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1108)
Q Consensus 343 ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 422 (1108)
.+-+|.......
T Consensus 347 --tlflW~p~~~kk------------------------------------------------------------------ 358 (480)
T KOG0271|consen 347 --TLFLWNPFKSKK------------------------------------------------------------------ 358 (480)
T ss_pred --eEEEeccccccc------------------------------------------------------------------
Confidence 222221110000
Q ss_pred CccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEe
Q 001279 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1108)
Q Consensus 423 ~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs 502 (1108)
+| .-..||...++-+.|+||++++|+|+
T Consensus 359 -------------pi---------------------------------------~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 359 -------------PI---------------------------------------TRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred -------------ch---------------------------------------hhhhchhhheeeEEECCCccEEEEee
Confidence 00 00123444555568999999999999
Q ss_pred cCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCcc
Q 001279 503 HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKS 582 (1108)
Q Consensus 503 ~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~ 582 (1108)
-|.+||+||..++... ..+.+|-.+|..++|+.|.++|++|+.|.+++||++.+..
T Consensus 387 FDkSVkLW~g~tGk~l-----------asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK------------- 442 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFL-----------ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK------------- 442 (480)
T ss_pred cccceeeeeCCCcchh-----------hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee-------------
Confidence 9999999999998855 5688999999999999999999999999999999998862
Q ss_pred ceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001279 583 EVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1108)
Q Consensus 583 ~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd 631 (1108)
+...+-+|...|.++.|+|||+.+|+|+.|..+++|.
T Consensus 443 ------------l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 ------------LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ------------ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 3456678999999999999999999999999999994
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-36 Score=325.37 Aligned_cols=520 Identities=14% Similarity=0.128 Sum_probs=342.1
Q ss_pred ceeeeee-CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCC---CCCCEEEEEEeeCCCEEEEEeCC--Cc
Q 001279 26 LRIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP---SQLPYKNLEFLQNQGFLISITND--NE 99 (1108)
Q Consensus 26 ~~~~~~~-G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~---h~~~V~~l~fs~d~~~L~S~s~d--~~ 99 (1108)
+..+..| +|.+.++...|+|.|-|+|+|...|.|||||....+.++..+ -.++|+.|+|+.++++++.++.. +.
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 3445555 577888889999999999999999999999998876665443 56799999999999999999864 33
Q ss_pred EEEEEcCCCeeeeee-cCCCCeeEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001279 100 IQVWSLESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1108)
Q Consensus 100 I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~-~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1108)
.+++-++++.-+-.+ +|...|.+++|-|..+ ++++|++|++|-++.=. ||+|.... +.|..
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP---------PFKFk~s~--------r~Hsk 191 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP---------PFKFKSSF--------REHSK 191 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC---------Ceeeeecc--------ccccc
Confidence 444444566555554 7888999999999886 68999999988665421 45554221 12226
Q ss_pred CeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEe
Q 001279 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1108)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1108)
-|.|+.|+| +|.++++++.||.|.+||-.+++.+..++. ...+.+.|.++.|
T Consensus 192 FV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~--------------------------~~aHkGsIfalsW 243 (603)
T KOG0318|consen 192 FVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELED--------------------------SDAHKGSIFALSW 243 (603)
T ss_pred ceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecC--------------------------CCCccccEEEEEE
Confidence 799999999 799999999999999999999987665532 1122889999999
Q ss_pred ecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCC--Cc-eeeeecc---------------ccc--CCccEEEEEeec
Q 001279 258 ASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSR--NN-VVKLELS---------------SAE--RRLPVIVLHWST 317 (1108)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~--~~-~~kl~~~---------------~~~--~~~~i~~~~~~~ 317 (1108)
. ||+..+++++.|.++++||+.+............ +. +.-+|.. +.. ....++..|.-.
T Consensus 244 s-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 244 S-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred C-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 6 9999999999999999999998764433111110 11 1111110 000 111223334444
Q ss_pred ccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCC
Q 001279 318 NKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSP 397 (1108)
Q Consensus 318 ~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~ 397 (1108)
..++...+++..+++|..|+ .+.-|.......-+- ..-....-+..|.. .+.
T Consensus 323 ITaLtv~~d~~~i~SgsyDG-------~I~~W~~~~g~~~~~---~g~~h~nqI~~~~~------------------~~~ 374 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDG-------HINSWDSGSGTSDRL---AGKGHTNQIKGMAA------------------SES 374 (603)
T ss_pred eeEEEEcCCCCEEEeeccCc-------eEEEEecCCcccccc---ccccccceEEEEee------------------cCC
Confidence 44455677778888888887 555554431111000 00001112222222 222
Q ss_pred CeEEEEeccceeeeccccC-CCCC---CCCccCCccccCCCC-cceEEEEEeccCCCCchhhhhHHHhhccccCCCCccC
Q 001279 398 GQLHFYDNASLTTLLSQQE-KKPS---VCPVEFPGVIPISDP-IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1108)
Q Consensus 398 G~l~~~d~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~-~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1108)
++++........+...... +... .....+|..+....+ .+....+.. +..+ + .....
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~---~iv~---l------~~~~~------ 436 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS---DIVL---L------QDQTK------ 436 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC---cEEE---E------ecCCc------
Confidence 4444332222222221111 0000 011122222222222 111111110 0000 0 00000
Q ss_pred cccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEE
Q 001279 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1108)
Q Consensus 473 ~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~La 552 (1108)
+..-......++++++|+++.++.|++||.|+||.+.+..+.. ...+..|+++|++++||||+.|||
T Consensus 437 ----~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e---------e~~~~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 437 ----VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE---------EAKLLEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred ----ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc---------eeeeecccCCceEEEECCCCcEEE
Confidence 0000112234566899999999999999999999999877431 123668999999999999999999
Q ss_pred EEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001279 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1108)
Q Consensus 553 sg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~ 632 (1108)
+|+..+.|.+|+...... -...+..|.+.|.||+|+|+.+++|+|+-|-+|.||++
T Consensus 504 ~~Da~rkvv~yd~~s~~~------------------------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREV------------------------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EeccCCcEEEEEcccCce------------------------ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 999999999999987621 12345569999999999999999999999999999999
Q ss_pred cCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 633 NLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 633 ~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
..+.-.. .....|...|..|.|-. ...|++.+.|..|.+|..
T Consensus 560 ~kP~~~i--~iknAH~~gVn~v~wld-----------------------e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 560 KKPAKHI--IIKNAHLGGVNSVAWLD-----------------------ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred cChhhhe--EeccccccCceeEEEec-----------------------CceEEeccCcceeEEecc
Confidence 8875442 23346999999999992 566999999999999985
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-35 Score=325.66 Aligned_cols=515 Identities=14% Similarity=0.158 Sum_probs=354.3
Q ss_pred cceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEec-CCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001279 25 NLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1108)
Q Consensus 25 ~~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1108)
++++.+.-|-......+.|++||.-+.+-. .++|-+||+ ++....+..++...|+.++.||+|.+|+++...|...+-
T Consensus 4 efrfsNllGTvyr~Gnl~ft~dG~sviSPv-GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lv 82 (893)
T KOG0291|consen 4 EFRFSNLLGTVYRAGNLVFTKDGNSVISPV-GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLV 82 (893)
T ss_pred ccchhhcccceeecCcEEECCCCCEEEecc-CCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEE
Confidence 455666667777777899999999886654 688999999 566777888899999999999999999999999999999
Q ss_pred EcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 104 SLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 104 d~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
++..+.+++.+....+|.|+.|+|+++++++|..+ .+.||........ .-.||...... ..+-+.|+++.
T Consensus 83 s~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~-~~~pFvl~r~~--------~g~fddi~si~ 152 (893)
T KOG0291|consen 83 SLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKN-EFNPFVLHRTY--------LGHFDDITSID 152 (893)
T ss_pred ecccceeeEEEeecCccceEEECCCCcEEEEEecc-eeEEEecCcchhc-ccCcceEeeee--------cCCccceeEEE
Confidence 99999999999999999999999999999999866 4789986542221 11233221100 11227799999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCeE---EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 184 PHPNSSGNRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~lWdl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
| ++|...|++|+.|-+++||+++..+- ..+.+| ...|.++. +..
T Consensus 153 W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gH------------------------------kd~Vvacf-F~~ 199 (893)
T KOG0291|consen 153 W--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGH------------------------------KDYVVACF-FGA 199 (893)
T ss_pred e--ccCCceEEeccccceEEEEEeccccccceEeccCC------------------------------CcceEEEE-ecc
Confidence 9 55888899999999999999987654 334556 44454444 568
Q ss_pred CCCEEEEEEccCcEEEEecCCCCCCCCc--cC-CCCCceeeeeccccc---CCccEEEEEeecc-----cccccCCCceE
Q 001279 261 SGSILAVGYIDGDILLWNTSTTASTKGQ--QT-GSRNNVVKLELSSAE---RRLPVIVLHWSTN-----KESRSNIDGRL 329 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~~~~~~~--~~-~~~~~~~kl~~~~~~---~~~~i~~~~~~~~-----~s~~~~~~~~l 329 (1108)
+...+++.+.||.|.+|.+......... .. ............... ..-....-||... ...++.+...+
T Consensus 200 ~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~ 279 (893)
T KOG0291|consen 200 NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNL 279 (893)
T ss_pred CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceE
Confidence 8899999999999999988732111000 00 000000000000000 0000111222221 11235556667
Q ss_pred EEEeCCCCCCcceEEEEeccccccccccceeeeeecCCC-CccceEEEecCCCCCCCCCcceEEEE-cCCCeEEEEeccc
Q 001279 330 FVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT-GSFADMILLSSAGATVGNHKADLFVL-TSPGQLHFYDNAS 407 (1108)
Q Consensus 330 lv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~-~~v~~~~~~p~~~~~~~~~~~~l~vl-~~~G~l~~~d~~~ 407 (1108)
+++|-..+ +..+..-+++..+ ..+... .++..+.+...+. -+++. ..-||+.+|+...
T Consensus 280 lvvgFssG-------~f~LyelP~f~li-----h~LSis~~~I~t~~~N~tGD--------WiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 280 LVVGFSSG-------EFGLYELPDFNLI-----HSLSISDQKILTVSFNSTGD--------WIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred EEEEecCC-------eeEEEecCCceEE-----EEeecccceeeEEEecccCC--------EEEEcCCccceEEEEEeec
Confidence 77776655 3333333332222 223333 3666666655422 23333 2237888887332
Q ss_pred eeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCC
Q 001279 408 LTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVP 487 (1108)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~ 487 (1108)
..-.+. ..||...++
T Consensus 340 EsYVlK-----------------------------------------------------------------QQgH~~~i~ 354 (893)
T KOG0291|consen 340 ESYVLK-----------------------------------------------------------------QQGHSDRIT 354 (893)
T ss_pred cceeee-----------------------------------------------------------------cccccccee
Confidence 211111 124445556
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecC
Q 001279 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 488 ~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
+++.+|||+++|||++||.|||||...+.|- +++..|+..|+++.|+..++.|++.+.||+|+.||+..
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~-----------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCF-----------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEE-----------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 6788999999999999999999999999988 78899999999999999999999999999999999987
Q ss_pred CCCCccc------cccc---cCccc-----------eeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeE
Q 001279 568 SLDAKNF------LFVL---ETKSE-----------VHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1108)
Q Consensus 568 ~~~~~~~------~~~~---~~~~~-----------~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V 627 (1108)
..+-..+ +|.. ...++ +..+..+.| +++-.+.+|.+||.+++|+|++..||+|+.|.+|
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence 7543221 1111 11222 222222222 3566788999999999999999999999999999
Q ss_pred EEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCccee
Q 001279 628 AVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 705 (1108)
Q Consensus 628 ~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l 705 (1108)
++||+-...-... . -.+.+-|..+.|. |++.-|++++-||.|.+||...+...
T Consensus 503 RiW~if~s~~~vE--t-l~i~sdvl~vsfr----------------------PdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 503 RIWDIFSSSGTVE--T-LEIRSDVLAVSFR----------------------PDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred EEEEeeccCceee--e-EeeccceeEEEEc----------------------CCCCeEEEEEecceEEEEEhhhceee
Confidence 9999965521111 1 2377889999999 67888999999999999998765544
No 7
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-36 Score=334.39 Aligned_cols=489 Identities=15% Similarity=0.172 Sum_probs=337.9
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~ 112 (1108)
-...++|+.-+|+.-+||+|-.||.|+||+....+. +...+|..+|+.|.|...|.+|+|+|.|+.|.|||+-...-+.
T Consensus 64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~ 143 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF 143 (888)
T ss_pred ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE
Confidence 345799999999999999999999999999965544 4677899999999999999999999999999999998777666
Q ss_pred ee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 113 ~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
.+ +|...||.+-|..+.+++++.+.|+.|++|+++.+ .+. ++.-.|. +.|.++++++ +
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq--hCf---~Thvd~r------------~Eiw~l~~~~----~ 202 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ--HCF---ETHVDHR------------GEIWALVLDE----K 202 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc--eee---eEEeccc------------ceEEEEEEec----c
Confidence 65 78999999999999999999999999999999863 222 2344454 7799999954 5
Q ss_pred EEEEEECCCeEEEEEccCC-------eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 192 RVLIAYENALVILWDVSEA-------QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 192 ~ll~~~~dg~V~lWdl~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
++++++.|+.+++|++... +.+..... ...+ .+.+.+.|+-+. .+++++
T Consensus 203 ~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~-G~~~---------------------rqsk~R~i~l~~--d~s~r~ 258 (888)
T KOG0306|consen 203 LLVTAGTDSELKVWELAFEDDEKETNRYISTKLR-GTFI---------------------RQSKGREINLVT--DFSDRF 258 (888)
T ss_pred eEEEEecCCceEEEEeecccccccccccceeecc-ceee---------------------eccCCceeEEee--cCcccE
Confidence 7999999999999998321 11111000 0000 001122333333 366777
Q ss_pred EEEEEccCcEEEEecCCCCCCCC----------ccCC-----------------------CCCceeeeeccccc-CC---
Q 001279 265 LAVGYIDGDILLWNTSTTASTKG----------QQTG-----------------------SRNNVVKLELSSAE-RR--- 307 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~----------~~~~-----------------------~~~~~~kl~~~~~~-~~--- 307 (1108)
+++-+.|..+.++.+.+...... .... ....+..+.+..+. ..
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~l 338 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTL 338 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeE
Confidence 77777787777777655430000 0000 00000000000000 00
Q ss_pred --------------------------ccE-EEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccccccccccee
Q 001279 308 --------------------------LPV-IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1108)
Q Consensus 308 --------------------------~~i-~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~ 360 (1108)
..+ ...|.....+++++.+..++.+|+.+ -+++|.....+.+
T Consensus 339 v~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~--------SikiWn~~t~kci--- 407 (888)
T KOG0306|consen 339 VLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGE--------SIKIWNRDTLKCI--- 407 (888)
T ss_pred EEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCC--------cEEEEEccCccee---
Confidence 000 11133333344566677777777665 5677765533332
Q ss_pred eeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEE
Q 001279 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVA 440 (1108)
Q Consensus 361 ~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 440 (1108)
..++.. -+....|.|... .+++.+.+|++.+||.+.....-
T Consensus 408 --RTi~~~-y~l~~~Fvpgd~--------~Iv~G~k~Gel~vfdlaS~~l~E---------------------------- 448 (888)
T KOG0306|consen 408 --RTITCG-YILASKFVPGDR--------YIVLGTKNGELQVFDLASASLVE---------------------------- 448 (888)
T ss_pred --EEeccc-cEEEEEecCCCc--------eEEEeccCCceEEEEeehhhhhh----------------------------
Confidence 222222 455556666532 46667888999998843321100
Q ss_pred EEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCC-----C
Q 001279 441 EFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY-----P 515 (1108)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~-----~ 515 (1108)
....|.+.++.++.+||+..++||+.|.+|++||..- +
T Consensus 449 -------------------------------------ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 449 -------------------------------------TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred -------------------------------------hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 0112333445557899999999999999999999541 1
Q ss_pred ceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceE
Q 001279 516 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 595 (1108)
Q Consensus 516 ~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 595 (1108)
.......++.. ....+ ...|.|+.+|||+++||++-.|.+|+||-+++- ..
T Consensus 492 t~~k~lsl~~~-rtLel---~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-------------------------KF 542 (888)
T KOG0306|consen 492 TQKKVLSLKHT-RTLEL---EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-------------------------KF 542 (888)
T ss_pred ccceeeeeccc-eEEec---cccEEEEEEcCCCcEEEEEeccCeEEEEEecce-------------------------ee
Confidence 21111222210 01122 247999999999999999999999999999885 34
Q ss_pred EEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCC
Q 001279 596 RAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSERE 675 (1108)
Q Consensus 596 ~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~ 675 (1108)
...+.+|.-||.||.+|||++++++|+.|.+|+||-+.-|.+. ..+.+|.+.|.++.|-|
T Consensus 543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~fAHdDSvm~V~F~P----------------- 602 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSFFAHDDSVMSVQFLP----------------- 602 (888)
T ss_pred eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhhhcccCceeEEEEcc-----------------
Confidence 5778899999999999999999999999999999999999887 56778999999999994
Q ss_pred CCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 676 VPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 676 ~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
...+++++++|+.|.-||++.-++|...
T Consensus 603 -----~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 603 -----KTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred -----cceeEEEecCcceEEeechhhhhhheee
Confidence 4677999999999999999987776543
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=320.53 Aligned_cols=496 Identities=15% Similarity=0.193 Sum_probs=361.2
Q ss_pred eeee-eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce---------EEeCCCCCCEEEEEEeeCCCEEEEEeC
Q 001279 27 RIAV-HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG---------LLISPSQLPYKNLEFLQNQGFLISITN 96 (1108)
Q Consensus 27 ~~~~-~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~---------~~~~~h~~~V~~l~fs~d~~~L~S~s~ 96 (1108)
|.+. ||-...++.|+.|||+|+++|+|. ...+.||..++... ....+|-..|++|.|+.|.++|+++|.
T Consensus 87 r~Vlh~f~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr 165 (893)
T KOG0291|consen 87 RSVLHRFNFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR 165 (893)
T ss_pred ceeeEEEeecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc
Confidence 3344 468899999999999999999997 57899998754322 245568889999999999999999999
Q ss_pred CCcEEEEEcCCCeeeee---ecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCC----------------------
Q 001279 97 DNEIQVWSLESRSLACC---LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG---------------------- 151 (1108)
Q Consensus 97 d~~I~vWd~~s~~~~~~---~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~---------------------- 151 (1108)
|-.+++|+++..+-+.. ..|...|-+.-|..+...+++.+.||.+.+|.++....
T Consensus 166 D~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~E 245 (893)
T KOG0291|consen 166 DLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGE 245 (893)
T ss_pred cceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccch
Confidence 99999999987654322 37889999999999999999999999999999982111
Q ss_pred -eeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCC
Q 001279 152 -KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1108)
Q Consensus 152 -~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 230 (1108)
+..+..|... +...+.. ....|++..||| .-+.|++|+.+|...+|.+....++....- .
T Consensus 246 ek~~~~~~~k~-----~k~~ln~-~~~kvtaa~fH~--~t~~lvvgFssG~f~LyelP~f~lih~LSi---------s-- 306 (893)
T KOG0291|consen 246 EKTHKIFWYKT-----KKHYLNQ-NSSKVTAAAFHK--GTNLLVVGFSSGEFGLYELPDFNLIHSLSI---------S-- 306 (893)
T ss_pred hhhcceEEEEE-----Eeeeecc-cccceeeeeccC--CceEEEEEecCCeeEEEecCCceEEEEeec---------c--
Confidence 0000001000 0111111 115699999999 466799999999999999999877654321 1
Q ss_pred CCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc-CcEEEEecCCCCCCCCccCCCCCceeeeecccccCCcc
Q 001279 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 309 (1108)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D-G~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~ 309 (1108)
+.+|..+.|. ..|.+|+.|+.. |.|.+|+..+... +.+.+-
T Consensus 307 ------------------~~~I~t~~~N-~tGDWiA~g~~klgQLlVweWqsEsY-----------VlKQQg-------- 348 (893)
T KOG0291|consen 307 ------------------DQKILTVSFN-STGDWIAFGCSKLGQLLVWEWQSESY-----------VLKQQG-------- 348 (893)
T ss_pred ------------------cceeeEEEec-ccCCEEEEcCCccceEEEEEeeccce-----------eeeccc--------
Confidence 6789999986 789999999865 8999999875421 122111
Q ss_pred EEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCC-CccceEEEecCCCCCCCCCc
Q 001279 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT-GSFADMILLSSAGATVGNHK 388 (1108)
Q Consensus 310 i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~-~~v~~~~~~p~~~~~~~~~~ 388 (1108)
|.....+++.++||+++++|++|+ -+++|....--.. ..+..+ ..+..+.+....
T Consensus 349 ----H~~~i~~l~YSpDgq~iaTG~eDg-------KVKvWn~~SgfC~-----vTFteHts~Vt~v~f~~~g-------- 404 (893)
T KOG0291|consen 349 ----HSDRITSLAYSPDGQLIATGAEDG-------KVKVWNTQSGFCF-----VTFTEHTSGVTAVQFTARG-------- 404 (893)
T ss_pred ----cccceeeEEECCCCcEEEeccCCC-------cEEEEeccCceEE-----EEeccCCCceEEEEEEecC--------
Confidence 111111245889999999999998 8999976532222 334333 356666666653
Q ss_pred ceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCC
Q 001279 389 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSH 468 (1108)
Q Consensus 389 ~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1108)
..++..+-+|.+..||......+..
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNfRT------------------------------------------------------- 429 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNFRT------------------------------------------------------- 429 (893)
T ss_pred CEEEEeecCCeEEeeeecccceeee-------------------------------------------------------
Confidence 3677778899999999544322221
Q ss_pred CccCcccccccCCcccCCCccccCCCCcEEEEEecCCc-EEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeC
Q 001279 469 TQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI 547 (1108)
Q Consensus 469 ~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGt-VriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d 547 (1108)
.+...+...++++..|.|.++++|+.|.. |.+|+++++.+. -.+.||.+||.+|+|+|+
T Consensus 430 ---------ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll-----------DiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 430 ---------FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL-----------DILSGHEGPVSGLSFSPD 489 (893)
T ss_pred ---------ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee-----------ehhcCCCCcceeeEEccc
Confidence 12222334456678888999999999985 999999999976 348899999999999999
Q ss_pred CCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeE
Q 001279 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1108)
Q Consensus 548 ~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V 627 (1108)
+..|++|+.|.+||+|++-..... +.+ -.+...|++++|+|+|+-||+.+-||.|
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~------------------------vEt-l~i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGT------------------------VET-LEIRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred cCeEEeccccceEEEEEeeccCce------------------------eee-EeeccceeEEEEcCCCCeEEEEEecceE
Confidence 999999999999999998765322 112 2467789999999999999999999999
Q ss_pred EEEEccCceEEEEeec----C-------------CCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcC
Q 001279 628 AVLDMNLLSVLFFTDD----I-------------SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK 690 (1108)
Q Consensus 628 ~vwd~~~~~~~~~~~~----~-------------~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~ 690 (1108)
.+||+..+..+..... . ..-....++++|+ +|+.++++|++
T Consensus 545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS----------------------aDG~~IlAgG~ 602 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS----------------------ADGKCILAGGE 602 (893)
T ss_pred EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEc----------------------CCCCEEEecCC
Confidence 9999987655422111 0 0112345566666 77999999999
Q ss_pred CccEEEEeCCCcceecCCC-------------CcccccceeeEEEEecC
Q 001279 691 DAKISIVGGSSENMISSSP-------------WHLKKKVIAISMEVIAE 726 (1108)
Q Consensus 691 Dg~v~v~d~~~g~~l~~~~-------------~~~~~~~~~~~~~~~~~ 726 (1108)
...||+||..+|.++.... +.-++....-.|.++|.
T Consensus 603 sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~ 651 (893)
T KOG0291|consen 603 SNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDT 651 (893)
T ss_pred cccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccc
Confidence 9999999999999886542 23334445566666665
No 9
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-33 Score=345.05 Aligned_cols=262 Identities=21% Similarity=0.165 Sum_probs=199.3
Q ss_pred CCcEEEEEecCeeEEEecccccccccceeeeecCCCcceeeeeeecCCceeEEEEEeecCcEEEeecCCccccccccccc
Q 001279 780 NDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMS 859 (1108)
Q Consensus 780 ~~~~~~~c~e~~~~v~sl~~~~~g~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~ 859 (1108)
.+.+++.|+|+.+|||+++++.++....++...+...++|..+... .++|+|++.+|+|++++||+|+++....+-.
T Consensus 723 ~~~~~~i~~e~~~~v~~~~~q~~~~~~~~~~~~~~~~~~~~~i~~~---~~~l~~~~~~g~i~~~slp~Lre~~~~v~~l 799 (993)
T KOG1983|consen 723 IEVPTLICGESAIRVFSVPAQQCKELQLIHEAPVVGISVLDGISKP---EPSLDLLDANGHISKHSLPSLREEQFKVLPL 799 (993)
T ss_pred cccceEEecCCccceecccccccccceeeccccceeeeeeecccCc---cceeeEeecCCCccceecchhhhhhccccCC
Confidence 3679999999999999999965555555555555556677654332 6799999999999999999999999888888
Q ss_pred eeeceecCccccc-cccC-CCc-EEEEcCceeEEEEeecCCCceeccC----CCCcchhhhhHHHHHhhcccCchhhhcc
Q 001279 860 ILRWNFKANMDKT-ISAD-NGQ-ITLANGSEVAFVNLLAGENEFSILE----SSPCLHDKVLEAAAAAAFNVSSNQKKKQ 932 (1108)
Q Consensus 860 ~~~~~~~~~~~~~-~~~s-~Gq-~~l~~~~e~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 932 (1108)
++.|.+..++..+ .+|+ .++ .+++.+.|++.. ++.++.+..+.+ +++.++.+.+.+.+. ..+
T Consensus 800 p~~~~~i~~~~~~~~g~~~~~~~~~~~s~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 868 (993)
T KOG1983|consen 800 PLVKNIIKNKLTAGNGFSVHKVGELAASAVERSKK-TLEQELQELTNLGDISVLGLPLLKLEIPYAP----------IRQ 868 (993)
T ss_pred cchhhhcccchhccccccccchhheecchhhhhhc-cccccccccccccccccccccccchhhhhhh----------hhc
Confidence 8889988887654 3678 787 555666887774 788899999999 888888887776663 122
Q ss_pred cccCCccccccccccccccccccCCCCCccCchhhhhcccCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcc
Q 001279 933 TTAAGILGGIVKGFRGEKMIHTLDDSIDPKSSFSQLGGIFSRPPFPDLSPAATNNEEIELNIDDIEIDEPPSMMATSSHE 1012 (1108)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1108)
++|.|+ ++++..+++.. +..||.+.+|.++.+....|..+..
T Consensus 869 ----~~~~g~---l~~g~~~~~~~-------------------------------~i~~l~~e~~~~~~~~~~~~~~~~~ 910 (993)
T KOG1983|consen 869 ----SDIKGV---LFFGTVGCDPY-------------------------------KISELEGERISLATKYEVVPISSGD 910 (993)
T ss_pred ----cccccc---cccCcCCCChh-------------------------------hhcccccccccccccceeecccccc
Confidence 676553 44443222211 2567888888888888777654443
Q ss_pred cccccchhhhhhhhhcCCCCCCCCCCCCHHHHHHHhccCCChhH--HHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHH
Q 001279 1013 VTNTKKEKLSERERLLGVPDDAKPRLRTREEIIAKYRKAEDASS--VAAHARDKLFERQDKLERISRCTEELQSGAEDFA 1090 (1108)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~ 1090 (1108)
..+ |. ...+.....+.+..+|+++.+.++ ++.+|+++|+||+|||+++|+||++|+++|++||
T Consensus 911 ~~~--------~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s 975 (993)
T KOG1983|consen 911 VSS--------RS-------SARAILGPPDGEEPKYAQASGVSSGSAASGALQPLNERGERLSRLEERTAEMANSAKQFS 975 (993)
T ss_pred CCc--------cc-------ccccccCCCcccchhhcccccccccchhhhcchhhHhhccccchHHHHHHHhhccHHHHH
Confidence 322 11 012333445556777888887765 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccC
Q 001279 1091 SLANELVKTMENRKWWKI 1108 (1108)
Q Consensus 1091 ~~a~~~~~~~~~~~~~~~ 1108 (1108)
++|||++.+++.||||||
T Consensus 976 ~~a~e~~~~~~~kk~~~f 993 (993)
T KOG1983|consen 976 STAHELTGKYKVKKWYDF 993 (993)
T ss_pred HHHHHHHhhhhhhhhccC
Confidence 999999999999999997
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-31 Score=295.14 Aligned_cols=590 Identities=15% Similarity=0.166 Sum_probs=388.8
Q ss_pred CCCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCee
Q 001279 46 IQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNIT 121 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~It 121 (1108)
.|+++|+. ..-.|.+||+... ..+.......+|++++-++|..+|+.+-.||.|++|+..+...+..+ .|...||
T Consensus 33 ~Gr~va~~-a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 33 KGRAVAVS-ALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CCcEEEEe-ccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 47777763 3456999999776 33344455579999999999988999999999999999999777666 7999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCe
Q 001279 122 AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1108)
Q Consensus 122 sl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~ 201 (1108)
++.|+..|.+|++|+.|+.|-|||+-.+.|. |++.+|. +.|+...|.. ....|++.+.|++
T Consensus 112 ~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl-----~rL~GHk------------d~iT~~~F~~--~~~~lvS~sKDs~ 172 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKDTDIIVWDLVGEEGL-----FRLRGHK------------DSITQALFLN--GDSFLVSVSKDSM 172 (888)
T ss_pred EEEEcccCceEeecCCCccEEEEEeccceee-----EEeecch------------HHHhHHhccC--CCeEEEEeccCce
Confidence 9999999999999999999999998765444 5588887 7899988844 4667899999999
Q ss_pred EEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 202 VILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 202 V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
|++||+++..+.. +..| .++|.+++.. +..++++..|+.+++|++.
T Consensus 173 iK~WdL~tqhCf~Thvd~------------------------------r~Eiw~l~~~---~~~lvt~~~dse~~v~~L~ 219 (888)
T KOG0306|consen 173 IKFWDLETQHCFETHVDH------------------------------RGEIWALVLD---EKLLVTAGTDSELKVWELA 219 (888)
T ss_pred EEEEecccceeeeEEecc------------------------------cceEEEEEEe---cceEEEEecCCceEEEEee
Confidence 9999999997754 5555 7889999954 3889999999999999994
Q ss_pred CCCCCCC-ccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecc---ccccc--
Q 001279 281 TTASTKG-QQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE---WSSGM-- 354 (1108)
Q Consensus 281 ~~~~~~~-~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~---~~~~~-- 354 (1108)
....... ....+......+...+ ..+++..+ ...+++++++.|.|. ++.+- ...+.
T Consensus 220 ~~~D~~~~~~~~s~~~~G~~~rqs--k~R~i~l~---------~d~s~r~~~c~g~d~-------~~e~frI~s~~E~~k 281 (888)
T KOG0306|consen 220 FEDDEKETNRYISTKLRGTFIRQS--KGREINLV---------TDFSDRFLVCQGADK-------VIELFRIRSKEEIAK 281 (888)
T ss_pred cccccccccccceeeccceeeecc--CCceeEEe---------ecCcccEEEEecchh-------hhhheeecCHHHHHH
Confidence 3211110 0011111111111111 12222222 556677888888775 33221 11100
Q ss_pred ---cccceeee----------------------eecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEecccee
Q 001279 355 ---ENLRCVSR----------------------VDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLT 409 (1108)
Q Consensus 355 ---~~~~~~~~----------------------~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~ 409 (1108)
+.++...+ -.......+.++.+.|... -...++. ..++.+..|....
T Consensus 282 ~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~-----~~~~lv~-l~nNtv~~ysl~~-- 353 (888)
T KOG0306|consen 282 ILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG-----TENTLVL-LANNTVEWYSLEN-- 353 (888)
T ss_pred HHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC-----cceeEEE-eecCceEEEEecc--
Confidence 00000000 0111223556666666532 1223333 4444455444211
Q ss_pred eeccccCCCC-CCCCccCCccccCCCCcceEEEEEecc-----CCCCchhhhhHHHhhccccCCCCccCcccccccCCcc
Q 001279 410 TLLSQQEKKP-SVCPVEFPGVIPISDPIMTVAEFMLLP-----FGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVP 483 (1108)
Q Consensus 410 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~it~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~ 483 (1108)
.... ..+.....+....|.+.|....+.... +.+...+.|+.-.-. ....++-+
T Consensus 354 ------s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k------------ciRTi~~~-- 413 (888)
T KOG0306|consen 354 ------SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK------------CIRTITCG-- 413 (888)
T ss_pred ------CCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc------------eeEEeccc--
Confidence 1111 111233345666788888777765432 111222333221000 00001111
Q ss_pred cCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEE
Q 001279 484 SPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIY 563 (1108)
Q Consensus 484 ~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw 563 (1108)
-+-+..|-|.++++++|..+|.+.++|+....+. -....|.+.|+.|+.+||++.+++|+.|.+|++|
T Consensus 414 -y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~-----------Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 414 -YILASKFVPGDRYIVLGTKNGELQVFDLASASLV-----------ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred -cEEEEEecCCCceEEEeccCCceEEEEeehhhhh-----------hhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 2233468899999999999999999998877654 2456899999999999999999999999999999
Q ss_pred EecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeec
Q 001279 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1108)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~ 643 (1108)
++.-...+ +.+.+.+-.+.+ ...-.....|.|+.+||||++||+|--|.+|+||-+.+-+..+ .
T Consensus 482 df~l~~~~------~gt~~k~lsl~~-------~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfl---s 545 (888)
T KOG0306|consen 482 DFKLVVSV------PGTQKKVLSLKH-------TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFL---S 545 (888)
T ss_pred eEEEEecc------Ccccceeeeecc-------ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeee---e
Confidence 98653210 011111111111 0111346789999999999999999999999999999877653 5
Q ss_pred CCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccceeeEEEE
Q 001279 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEV 723 (1108)
Q Consensus 644 ~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~~~~~~~~ 723 (1108)
+.||.-||.++..+ |+..++++|+.|.+|.||-.+-|.+-.+.--
T Consensus 546 LYGHkLPV~smDIS----------------------~DSklivTgSADKnVKiWGLdFGDCHKS~fA------------- 590 (888)
T KOG0306|consen 546 LYGHKLPVLSMDIS----------------------PDSKLIVTGSADKNVKIWGLDFGDCHKSFFA------------- 590 (888)
T ss_pred ecccccceeEEecc----------------------CCcCeEEeccCCCceEEeccccchhhhhhhc-------------
Confidence 68999999999999 6788999999999999999998887655411
Q ss_pred ecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC-eeEEEecccccc
Q 001279 724 IAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQ 802 (1108)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~-~~~v~sl~~~~~ 802 (1108)
|..++..+.|-|. +..+.+|+.| .++-|.-..
T Consensus 591 ------------------------------------------HdDSvm~V~F~P~--~~~FFt~gKD~kvKqWDg~k--- 623 (888)
T KOG0306|consen 591 ------------------------------------------HDDSVMSVQFLPK--THLFFTCGKDGKVKQWDGEK--- 623 (888)
T ss_pred ------------------------------------------ccCceeEEEEccc--ceeEEEecCcceEEeechhh---
Confidence 2222333445544 7799999999 999997665
Q ss_pred cccceeeeecCCCcceeeeeeecCCceeEEEEEeecCcEEEeecCC
Q 001279 803 GNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPD 848 (1108)
Q Consensus 803 g~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~ 848 (1108)
-..||+..-...=.|+-.+. |++..++....|-.|++|+--+
T Consensus 624 --Fe~iq~L~~H~~ev~cLav~--~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 624 --FEEIQKLDGHHSEVWCLAVS--PNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred --hhhheeeccchheeeeeEEc--CCCCeEEeccCCceeEeeeccC
Confidence 24455544222223432222 4566788777788899998777
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=295.29 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=239.3
Q ss_pred CCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecC--CCEEEEEeCCCcEEEEEEecCC
Q 001279 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADE 150 (1108)
Q Consensus 74 ~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~--~~~l~vg~~dg~V~vw~~d~~~ 150 (1108)
+.+.||..+.|+.|+..|+++|-+|.++||+..+...+..+ +|.+.|.++.|+|. +.-|++++.||++++|+++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 45679999999999999999999999999999999887777 89999999999998 568999999999999999864
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCCcccccccccC
Q 001279 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVD 229 (1108)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~ 229 (1108)
++.+ .+.+|. ..|..|+||| +|++|++++-|.+-++||++++.. ....||
T Consensus 252 -~~l~---~l~gH~------------~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGH----------- 302 (459)
T KOG0272|consen 252 -TPLQ---DLEGHL------------ARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGH----------- 302 (459)
T ss_pred -cchh---hhhcch------------hhheeeeecC--CCceeeecccccchhhcccccchhhHhhccc-----------
Confidence 3433 277776 7799999999 699999999999999999999854 455667
Q ss_pred CCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCcc
Q 001279 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 309 (1108)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~ 309 (1108)
.+.|.+++|. +||..+++|+.|..-++||+.++..
T Consensus 303 -------------------s~~v~~iaf~-~DGSL~~tGGlD~~~RvWDlRtgr~------------------------- 337 (459)
T KOG0272|consen 303 -------------------SKGVFSIAFQ-PDGSLAATGGLDSLGRVWDLRTGRC------------------------- 337 (459)
T ss_pred -------------------ccccceeEec-CCCceeeccCccchhheeecccCcE-------------------------
Confidence 8899999987 9999999999999999999976510
Q ss_pred EEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcc
Q 001279 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKA 389 (1108)
Q Consensus 310 i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~ 389 (1108)
.++..|
T Consensus 338 -------------------im~L~g------------------------------------------------------- 343 (459)
T KOG0272|consen 338 -------------------IMFLAG------------------------------------------------------- 343 (459)
T ss_pred -------------------EEEecc-------------------------------------------------------
Confidence 000000
Q ss_pred eEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCC
Q 001279 390 DLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHT 469 (1108)
Q Consensus 390 ~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1108)
T Consensus 344 -------------------------------------------------------------------------------- 343 (459)
T KOG0272|consen 344 -------------------------------------------------------------------------------- 343 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe-CC
Q 001279 470 QAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-IN 548 (1108)
Q Consensus 470 ~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~-d~ 548 (1108)
|..++..++++|+|..+|||+.|+++||||+...... -.+.+|..-|+.+.|+| .|
T Consensus 344 ------------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l-----------y~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 344 ------------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL-----------YTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred ------------cccceeeEeECCCceEEeecCCCCcEEEeeecccccc-----------eecccccchhhheEecccCC
Confidence 1111122368899999999999999999999877643 23678999999999999 78
Q ss_pred CeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEE
Q 001279 549 SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1108)
Q Consensus 549 ~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~ 628 (1108)
.+|++++.|++++||.-.+ ++++.++.+|.+.|.++.++++++++++++.|.+++
T Consensus 401 ~fL~TasyD~t~kiWs~~~-------------------------~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRT-------------------------WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eEEEEcccCcceeeecCCC-------------------------cccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence 8999999999999998555 368889999999999999999999999999999999
Q ss_pred EEE
Q 001279 629 VLD 631 (1108)
Q Consensus 629 vwd 631 (1108)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-29 Score=272.54 Aligned_cols=492 Identities=15% Similarity=0.151 Sum_probs=321.0
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL- 114 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~- 114 (1108)
....|..+|.+..++-.- ...|.+-+++... +..-.+|..+++-..|+|.|-|++|+...|.|+|||....+.+-..
T Consensus 20 ~~~~ig~dpkgd~ilY~n-Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKne 98 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTN-GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNE 98 (603)
T ss_pred cceEeccCCCCCeEEEeC-CCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeee
Confidence 345577788887766553 4567777776544 4466788889999999999999999999999999998875443222
Q ss_pred --cCCCCeeEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 115 --KWESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 115 --~~~~~Itsl~~~~~~~~l~vg~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
...++|..++|+++++++++.++. |.+..||-...-|. +.+|. ..|.++.|-|+
T Consensus 99 f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGe-------i~GhS------------r~ins~~~Kps- 158 (603)
T KOG0318|consen 99 FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGE-------ITGHS------------RRINSVDFKPS- 158 (603)
T ss_pred eeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccce-------eeccc------------eeEeeeeccCC-
Confidence 356899999999999887766542 44445543322222 55665 67999999997
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1108)
..-|+++++.|++|.+|.-.-.+.... ..| .+-|.|+.| +|||.++++
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~H------------------------------skFV~~VRy-sPDG~~Fat 207 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREH------------------------------SKFVNCVRY-SPDGSRFAT 207 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCeeeeeccccc------------------------------ccceeeEEE-CCCCCeEEE
Confidence 566799999999999998665554332 233 778999996 599999999
Q ss_pred EEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEe
Q 001279 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1108)
Q Consensus 268 g~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~ 347 (1108)
.+.||.+.+||-.+++... .+.. ...+..-|..+.| ++|+..+++.+.|. .++
T Consensus 208 ~gsDgki~iyDGktge~vg-----------~l~~-~~aHkGsIfalsW--------sPDs~~~~T~SaDk-------t~K 260 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVG-----------ELED-SDAHKGSIFALSW--------SPDSTQFLTVSADK-------TIK 260 (603)
T ss_pred ecCCccEEEEcCCCccEEE-----------EecC-CCCccccEEEEEE--------CCCCceEEEecCCc-------eEE
Confidence 9999999999998875322 2221 1113345666655 44667788887777 888
Q ss_pred ccccccccccceeeeeecCCCCccceE----EEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCC
Q 001279 348 LEWSSGMENLRCVSRVDITLTGSFADM----ILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCP 423 (1108)
Q Consensus 348 l~~~~~~~~~~~~~~~~l~~~~~v~~~----~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~ 423 (1108)
+|..+....+ ..+.....+.++ ++.. ..++.+..+|.+..++....
T Consensus 261 IWdVs~~slv-----~t~~~~~~v~dqqvG~lWqk----------d~lItVSl~G~in~ln~~d~--------------- 310 (603)
T KOG0318|consen 261 IWDVSTNSLV-----STWPMGSTVEDQQVGCLWQK----------DHLITVSLSGTINYLNPSDP--------------- 310 (603)
T ss_pred EEEeeccceE-----EEeecCCchhceEEEEEEeC----------CeEEEEEcCcEEEEecccCC---------------
Confidence 8877643322 222333333332 2221 25666666777766552221
Q ss_pred ccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCC-------ccccCC-CC
Q 001279 424 VEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVP-------ITKCHS-VD 495 (1108)
Q Consensus 424 ~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~-------~~~~s~-~~ 495 (1108)
..+..+.-|...||++........ .+ . ......-+.|-...|+...+. ...+.. ..
T Consensus 311 -~~~~~i~GHnK~ITaLtv~~d~~~-i~---------S-----gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 311 -SVLKVISGHNKSITALTVSPDGKT-IY---------S-----GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred -ChhheecccccceeEEEEcCCCCE-EE---------e-----eccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 122233335556666555432210 00 0 001112234444333332110 001111 22
Q ss_pred cEEEEEecCCcEEEEeCCCCceeeEe--eeccccce-----------------e-ecc--------CCCCCeEEEEEEeC
Q 001279 496 RVYLAGYHDGSVRIWDATYPVFKLIC--ALDAEVQG-----------------I-EVA--------GSRAPVSTLSFCFI 547 (1108)
Q Consensus 496 ~llatgs~DGtVriWd~~~~~l~~~~--~l~~~~~~-----------------~-~l~--------~h~~~Vt~lafs~d 547 (1108)
.-|+|.+.|.++|+-++......... .+..+... + .+. .-....++++++|+
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence 45556666666666654322211000 00000000 0 011 22335679999999
Q ss_pred CCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeE
Q 001279 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1108)
Q Consensus 548 ~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V 627 (1108)
+.++++|+.||.|+||.++..... .......|.++||+++||||+.+||+|+..+.|
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~-----------------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELK-----------------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred CCEEEEecccceEEEEEecCCccc-----------------------ceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 999999999999999999885321 123456899999999999999999999999999
Q ss_pred EEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 628 AVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 628 ~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
.+||+.+..+. ...+.-|+..|.+|+|+ |+..+|++|+-|-+|.||+.+
T Consensus 512 v~yd~~s~~~~--~~~w~FHtakI~~~aWs----------------------P~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 512 VLYDVASREVK--TNRWAFHTAKINCVAWS----------------------PNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred EEEEcccCcee--cceeeeeeeeEEEEEeC----------------------CCceEEEeccccceEEEEEcc
Confidence 99999998874 33444599999999999 557889999999999999975
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9e-33 Score=290.66 Aligned_cols=284 Identities=19% Similarity=0.221 Sum_probs=242.8
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.-..+|+.+.|+.+++.+++|+.+|.++||.... ..+. .++.+|. ..|.++.|||..++..|+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~---~~l~gH~------------~~v~~~~fhP~~~~~~la 235 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLL---QTLRGHT------------SRVGAAVFHPVDSDLNLA 235 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC--ccee---EEEeccc------------cceeeEEEccCCCcccee
Confidence 3456899999999999999999999999999875 3333 3477887 889999999975455699
Q ss_pred EEECCCeEEEEEccCCeE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCc
Q 001279 195 IAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~ 273 (1108)
+++.||++++|++++... ..+.+| ..+|..++|+ |+|++|++++.|.+
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH------------------------------~~RVs~VafH-PsG~~L~TasfD~t 284 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGH------------------------------LARVSRVAFH-PSGKFLGTASFDST 284 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcc------------------------------hhhheeeeec-CCCceeeecccccc
Confidence 999999999999999654 445666 7789999987 99999999999999
Q ss_pred EEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccccc
Q 001279 274 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1108)
Q Consensus 274 I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~ 353 (1108)
.++||+.++....
T Consensus 285 WRlWD~~tk~ElL------------------------------------------------------------------- 297 (459)
T KOG0272|consen 285 WRLWDLETKSELL------------------------------------------------------------------- 297 (459)
T ss_pred hhhcccccchhhH-------------------------------------------------------------------
Confidence 9999997541000
Q ss_pred ccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCC
Q 001279 354 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 433 (1108)
Q Consensus 354 ~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1108)
T Consensus 298 -------------------------------------------------------------------------------- 297 (459)
T KOG0272|consen 298 -------------------------------------------------------------------------------- 297 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCC
Q 001279 434 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 513 (1108)
Q Consensus 434 ~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~ 513 (1108)
+..||...+..+++++||.+++||+.|..-||||+.
T Consensus 298 --------------------------------------------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 298 --------------------------------------------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred --------------------------------------------hhcccccccceeEecCCCceeeccCccchhheeecc
Confidence 111232333344788999999999999999999999
Q ss_pred CCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcc
Q 001279 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1108)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 593 (1108)
++.+. .-+.+|..+|..|+|+|+|-.||+|+.|++++|||+....
T Consensus 334 tgr~i-----------m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~------------------------ 378 (459)
T KOG0272|consen 334 TGRCI-----------MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS------------------------ 378 (459)
T ss_pred cCcEE-----------EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc------------------------
Confidence 99977 5578999999999999999999999999999999998863
Q ss_pred eEEEEEeecCcCEEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCC
Q 001279 594 LCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHS 672 (1108)
Q Consensus 594 ~~~~~~~~h~~~Vtslafsp-dg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~ 672 (1108)
++.++-.|..-|+.|+|+| .|.+|++++-|++++||...+..++ ..+.||.+.|.++..+
T Consensus 379 -~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~---ksLaGHe~kV~s~Dis--------------- 439 (459)
T KOG0272|consen 379 -ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL---KSLAGHEGKVISLDIS--------------- 439 (459)
T ss_pred -cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc---hhhcCCccceEEEEec---------------
Confidence 3456678999999999999 7899999999999999999999888 6788999999999999
Q ss_pred CCCCCCCCCccEEEEEcCCccEEEEe
Q 001279 673 EREVPVNPAEEVIIVLFKDAKISIVG 698 (1108)
Q Consensus 673 ~~~~~~~p~~~~L~s~s~Dg~v~v~d 698 (1108)
|++.++++++.|.++.+|.
T Consensus 440 -------~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 -------PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -------cCCceEEEeccCceeeecc
Confidence 6688999999999999995
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.3e-29 Score=280.25 Aligned_cols=602 Identities=13% Similarity=0.124 Sum_probs=359.3
Q ss_pred CCCCceEEEEcCCCCEEEEEE--CCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCC--CcEEEEEcCCC
Q 001279 34 IPATASILAFDHIQRLLAIAT--LDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITND--NEIQVWSLESR 108 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs--~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d--~~I~vWd~~s~ 108 (1108)
+-..++|+||+++|+|+|+|. ....+++|++....+ .-+..|.-.|+|++|+|.+.|+++++.. -.|.||||+..
T Consensus 77 sRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N 156 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVN 156 (1080)
T ss_pred cCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhc
Confidence 344789999999999999998 557899999976554 4667899999999999999999999974 45889999887
Q ss_pred eeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 109 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 109 ~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
.....-+-...|++++|+.++.|+++.. +..|++|.++... -...|..+++. ...... +.
T Consensus 157 ~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~--KykdpiPl~gR----s~~lg~--------lr----- 216 (1080)
T KOG1408|consen 157 SSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQS--KYKDPIPLPGR----SYFLGN--------LR----- 216 (1080)
T ss_pred ccccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccc--cccCCccccch----hhhccc--------cc-----
Confidence 7777777788999999999999988775 4568999998632 11111122221 111110 00
Q ss_pred CCCEEEEEECCCeE--EEEEcc-CCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE
Q 001279 189 SGNRVLIAYENALV--ILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V--~lWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1108)
+...+++++..|.- .-|-+. .|.+..+...+.+ ..++ +.+...-.|+| -..++|
T Consensus 217 ~n~f~avaCg~gicAestfait~qGhLvEFSsRRLL--DKWV------------------qcRTTnAnCIc---Vs~r~I 273 (1080)
T KOG1408|consen 217 FNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLL--DKWV------------------QCRTTNANCIC---VSSRLI 273 (1080)
T ss_pred cchhhhhhhcCcccccceEEEecccceeeechhhhh--hhhh------------------hhhccccceee---eecceE
Confidence 11112222222210 001110 0111111000000 0000 00133345666 247899
Q ss_pred EEEEccCcEEEEecCCCCCCCCccCCCC--CceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceE
Q 001279 266 AVGYIDGDILLWNTSTTASTKGQQTGSR--NNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVL 343 (1108)
Q Consensus 266 ~sg~~DG~I~lWd~~~~~~~~~~~~~~~--~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~l 343 (1108)
++|+.+|.|++|+..+......++.... ..+..+ .+ ..-+.++....--+.
T Consensus 274 ~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~------------------------~q-~~~~~s~~~~a~fPD-- 326 (1080)
T KOG1408|consen 274 ACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL------------------------SQ-PEPKNSESSPAIFPD-- 326 (1080)
T ss_pred EEeeccceeeecCcchhhhccccccccccccchhhc------------------------cc-ccccccccCcccCCc--
Confidence 9999999999999887653332211110 000000 00 000001111100001
Q ss_pred EEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCC
Q 001279 344 TVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCP 423 (1108)
Q Consensus 344 tvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~ 423 (1108)
...+.|.+.. ..+..+.++-.+|+||...+...-.
T Consensus 327 ---------------------------~IA~~Fdet~--------~klscVYndhSlYvWDvrD~~kvgk---------- 361 (1080)
T KOG1408|consen 327 ---------------------------AIACQFDETT--------DKLSCVYNDHSLYVWDVRDVNKVGK---------- 361 (1080)
T ss_pred ---------------------------eeEEEecCCC--------ceEEEEEcCceEEEEeccccccccc----------
Confidence 1223333321 1466667778899998655422110
Q ss_pred ccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEec
Q 001279 424 VEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYH 503 (1108)
Q Consensus 424 ~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~ 503 (1108)
-+.+-+|...|.-...++ .|+.-|. . +.-|.+ -++|++.
T Consensus 362 ---~~s~lyHS~ciW~Ve~~p---------------------------~nv~~~~---------~-aclp~~-cF~TCSs 400 (1080)
T KOG1408|consen 362 ---CSSMLYHSACIWDVENLP---------------------------CNVHSPT---------A-ACLPRG-CFTTCSS 400 (1080)
T ss_pred ---eeeeeeccceeeeecccc---------------------------ccccCcc---------c-ccCCcc-ceeEecC
Confidence 011111222221111110 0000000 0 111222 4999999
Q ss_pred CCcEEEEeCCCCceeeEeeecc---cc--------------------ce---eeccCCCCCeEEEEEEeCCCeEEEEecC
Q 001279 504 DGSVRIWDATYPVFKLICALDA---EV--------------------QG---IEVAGSRAPVSTLSFCFINSSLAVGNEF 557 (1108)
Q Consensus 504 DGtVriWd~~~~~l~~~~~l~~---~~--------------------~~---~~l~~h~~~Vt~lafs~d~~~Lasg~~d 557 (1108)
||+||+||+....-..+|.-+. +. ++ +..-+.+..|++|+.+|++++||+|+..
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 9999999988743222211110 00 00 1123556689999999999999999999
Q ss_pred ceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCC---CCEEEEEeCCCeEEEEEccC
Q 001279 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS---GAKLAVGFECGRVAVLDMNL 634 (1108)
Q Consensus 558 G~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspd---g~~LavGs~dG~V~vwd~~~ 634 (1108)
|+++||++..... ......|...|.||.||.. .++||+++.|..|.|||+..
T Consensus 481 GnlrVy~Lq~l~~-------------------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 481 GNLRVYDLQELEY-------------------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CceEEEEehhhhh-------------------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 9999999987533 2445789999999999963 48999999999999999987
Q ss_pred ceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC----CcceecCCCC
Q 001279 635 LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS----SENMISSSPW 710 (1108)
Q Consensus 635 ~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~----~g~~l~~~~~ 710 (1108)
...+. +.+.+|++.|+++.|.-... ...+++++.|.+|. ++.. .|.+-.+...
T Consensus 536 ny~l~--qtld~HSssITsvKFa~~gl--------------------n~~MiscGADksim-Fr~~qk~~~g~~f~r~t~ 592 (1080)
T KOG1408|consen 536 NYDLV--QTLDGHSSSITSVKFACNGL--------------------NRKMISCGADKSIM-FRVNQKASSGRLFPRHTQ 592 (1080)
T ss_pred ccchh--hhhcccccceeEEEEeecCC--------------------ceEEEeccCchhhh-eehhccccCceecccccc
Confidence 76553 57789999999999994322 35688999998874 3322 1222211100
Q ss_pred cccccceeeEEEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC
Q 001279 711 HLKKKVIAISMEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED 790 (1108)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~ 790 (1108)
...+ -.+.|.. ..+. ..|+++.|.|
T Consensus 593 t~~k------tTlYDm~-----------------------------------------------Vdp~--~k~v~t~cQD 617 (1080)
T KOG1408|consen 593 TLSK------TTLYDMA-----------------------------------------------VDPT--SKLVVTVCQD 617 (1080)
T ss_pred cccc------ceEEEee-----------------------------------------------eCCC--cceEEEEecc
Confidence 0000 0111111 0111 3388888888
Q ss_pred -eeEEEecccccccccceeeeecCC--CcceeeeeeecCCceeEEEEEeecCcEEEeecCCccccccccccceeeceecC
Q 001279 791 -SVRLYSRKSVIQGNNKTVQKVKHK--NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKA 867 (1108)
Q Consensus 791 -~~~v~sl~~~~~g~~~~~~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~ 867 (1108)
-+|+|.+.+. -++..-|.... .... -+.-||.+..||+-|+|-+|.+++..+=|.+..+. =|.
T Consensus 618 rnirif~i~sg---Kq~k~FKgs~~~eG~lI---Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--------GHs 683 (1080)
T KOG1408|consen 618 RNIRIFDIESG---KQVKSFKGSRDHEGDLI---KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--------GHS 683 (1080)
T ss_pred cceEEEecccc---ceeeeecccccCCCceE---EEEECCCccEEEEeecCCceEEEEeccchhhhhhc--------Ccc
Confidence 9999988773 12222221111 1111 01225889999999999999999999999999872 244
Q ss_pred ccccccccC-CCc-EEEEcCceeEEEEeecCCCceeccCCCCc
Q 001279 868 NMDKTISAD-NGQ-ITLANGSEVAFVNLLAGENEFSILESSPC 908 (1108)
Q Consensus 868 ~~~~~~~~s-~Gq-~~l~~~~e~~~~~~~~~~~~~~~~~~~~~ 908 (1108)
-.++.+-|+ |.. +|=|.|++..||.-+..+|+.|...-++.
T Consensus 684 E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~m~~r~~~ 726 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIRMVNRNGR 726 (1080)
T ss_pred hheeeeeecccchhheeecCCceEEEEECchhHhHHHHHHhhH
Confidence 567788999 875 77788899999998888887776655543
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.4e-28 Score=273.14 Aligned_cols=550 Identities=13% Similarity=0.111 Sum_probs=315.7
Q ss_pred eeeeCCCCCceEEEEcCCCC---EEEEEECCCcEEEEecCCcceE---EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 001279 29 AVHYGIPATASILAFDHIQR---LLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~---~LA~Gs~dG~I~iw~~~~~~~~---~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1108)
+..-||...|+|+.+=|... ++++|+.||+|++|.+...... .+.+| .+.++++........+.+.|+.+.+
T Consensus 48 t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~--~~~~~cv~a~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 48 TTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH--CKECVCVVARSSVMTCKAADGTVSV 125 (764)
T ss_pred EeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCc--ceeEEEEEeeeeEEEeeccCceEEE
Confidence 45569999999999988877 8999999999999999633222 23334 4555556554322333368999999
Q ss_pred EEcCCCee--eeee-------------------------------------------------cCCCCeeEEEEecCC--
Q 001279 103 WSLESRSL--ACCL-------------------------------------------------KWESNITAFSVISGS-- 129 (1108)
Q Consensus 103 Wd~~s~~~--~~~~-------------------------------------------------~~~~~Itsl~~~~~~-- 129 (1108)
||.+..++ +..+ +|..-|.+++|...+
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~ 205 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD 205 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence 99854431 1000 122335555565433
Q ss_pred -CEEEEEeCCCcEEEEEEecCC--Ce---------ee---------eeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 130 -HFMYIGDENGLMSVIKYDADE--GK---------LF---------QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 130 -~~l~vg~~dg~V~vw~~d~~~--~~---------l~---------~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
-+|+++++|..||||++...+ .. +. ...|++.-+. .-.+|.++|.++.|||
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea------ll~GHeDWV~sv~W~p-- 277 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA------LLMGHEDWVYSVWWHP-- 277 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh------hhcCcccceEEEEEcc--
Confidence 478999999999999985432 00 00 0001111111 1235679999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
.+..|++++.|.++++|-..+..-++....+..++. +. .....+..|+ |++..+++.
T Consensus 278 ~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-------g~---------------a~GF~g~lw~-~n~~~ii~~ 334 (764)
T KOG1063|consen 278 EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-------GS---------------AGGFWGGLWS-PNSNVIIAH 334 (764)
T ss_pred chhhheecccCcceEEEecCCccceEEEEEEeeccc-------cc---------------ccceeeEEEc-CCCCEEEEe
Confidence 576699999999999999877644443221111111 00 2234556776 999999999
Q ss_pred EccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEec
Q 001279 269 YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSL 348 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l 348 (1108)
+..|.+++|...+. .. | ...+++..|..++..++-.+.|.+|++.|.|. ..++
T Consensus 335 g~~Gg~hlWkt~d~-------------~~--w-----~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ-------TTRl 387 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDK-------------TF--W-----TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ-------TTRL 387 (764)
T ss_pred cccCcEEEEeccCc-------------cc--e-----eeccccccccccceeeeecCCCCEEEEecccc-------ceee
Confidence 99999999993221 10 1 11122222333333334455677888888775 2222
Q ss_pred cccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEE-cCCCeEEEEeccceeee--ccccC-CCCCCCCc
Q 001279 349 EWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVL-TSPGQLHFYDNASLTTL--LSQQE-KKPSVCPV 424 (1108)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl-~~~G~l~~~d~~~~~~~--~~~~~-~~~~~~~~ 424 (1108)
-..-+.+.-.-....+--....+..+.+.+.. ..++. ....-+.+|+....... ..... ........
T Consensus 388 Fa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~---------~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~ 458 (764)
T KOG1063|consen 388 FARWGRQQEWHEIARPQIHGYDLTCLSFVNED---------LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL 458 (764)
T ss_pred ecccccccceeeecccccccccceeeehccCC---------ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence 11111000000000000011122233333310 11111 11122223332111000 00000 00000000
Q ss_pred cCCcccc---CCCCcce-----EEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccC---CcccCCCccccCC
Q 001279 425 EFPGVIP---ISDPIMT-----VAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSG---GVPSPVPITKCHS 493 (1108)
Q Consensus 425 ~~~~~~~---~~~~~it-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g---g~~~~~~~~~~s~ 493 (1108)
+.-..+| +...++. ........-+.-+ -...........+.++..++.||... ||..++.+++.+|
T Consensus 459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~---~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~ 535 (764)
T KOG1063|consen 459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL---AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP 535 (764)
T ss_pred ccccccccccccCCCCcccccccccccceeeeccc---ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC
Confidence 0000000 0000000 0000000000000 00000000011123455778898543 6667777889999
Q ss_pred CCcEEEEEecCCc-----EEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCC
Q 001279 494 VDRVYLAGYHDGS-----VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1108)
Q Consensus 494 ~~~llatgs~DGt-----VriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~ 568 (1108)
+++++||++.... |++|+..+.... ..+.+|+..|+.|+||||+++|++.++|.++.||.....
T Consensus 536 ~gnliASaCKS~~~ehAvI~lw~t~~W~~~-----------~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 536 TGNLIASACKSSLKEHAVIRLWNTANWLQV-----------QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred CCCEEeehhhhCCccceEEEEEeccchhhh-----------heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 9999999965443 999999877744 247899999999999999999999999999999998544
Q ss_pred CCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCc--eEEEEeecCCC
Q 001279 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL--SVLFFTDDISG 646 (1108)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~--~~~~~~~~~~~ 646 (1108)
.... .. ....+.|+.-|++..|+|+++++|++|.|.+|.||..... ..+.+. ....
T Consensus 605 ~~~e------------------~~---fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-a~~~ 662 (764)
T KOG1063|consen 605 IKDE------------------FR---FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-ACLK 662 (764)
T ss_pred cchh------------------hh---hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh-chhc
Confidence 2110 00 1225789999999999999999999999999999999887 333222 2345
Q ss_pred CCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
+..+|+.++|.+.... ..+.++++|.+.|.|++|...
T Consensus 663 ~~~aVTAv~~~~~~~~-----------------e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 663 FSLAVTAVAYLPVDHN-----------------EKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cCCceeeEEeeccccc-----------------cccceEEEEecccEEEEEecc
Confidence 8999999999976443 225589999999999999843
No 16
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=254.49 Aligned_cols=341 Identities=13% Similarity=0.146 Sum_probs=267.2
Q ss_pred eeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001279 27 RIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 27 ~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~ 105 (1108)
-++...+|...+.+++.+|+.+++|+|+.|..-.||+....+. ..+.+|...|+++.|+.+|.+|+++.-+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 3455679999999999999999999999999999999966554 477889999999999999999999999999999999
Q ss_pred CCCeeeeeec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 106 ESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 106 ~s~~~~~~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
.++.....+. .-..|.-+.|+|....|+.|+.||++..|.+... ...++ +.+|. .++++=.|
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--~~~kv---~~Gh~------------~~ct~G~f 198 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--ALCKV---MSGHN------------SPCTCGEF 198 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--ceeeE---ecCCC------------CCcccccc
Confidence 9998887775 4578999999999999999999999877777643 44443 66776 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
.| +|+++++++.||+|++||..++..+...... +..+.+++.. +..+..
T Consensus 199 ~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~----------------------------e~~~~~~~~~-~~~~~~ 247 (399)
T KOG0296|consen 199 IP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQA----------------------------EGLELPCISL-NLAGST 247 (399)
T ss_pred cC--CCceEEEEecCceEEEEecCCCceeEEeccc----------------------------ccCcCCcccc-ccccce
Confidence 88 7999999999999999999999876654321 1334455553 477888
Q ss_pred EEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEE
Q 001279 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~lt 344 (1108)
++.|..+|.+++-+..+++... .. ++ ...
T Consensus 248 ~~~g~~e~~~~~~~~~sgKVv~------------~~----------------------n~---------~~~-------- 276 (399)
T KOG0296|consen 248 LTKGNSEGVACGVNNGSGKVVN------------CN----------------------NG---------TVP-------- 276 (399)
T ss_pred eEeccCCccEEEEccccceEEE------------ec----------------------CC---------CCc--------
Confidence 9999999888877665431000 00 00 000
Q ss_pred EEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCc
Q 001279 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPV 424 (1108)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~ 424 (1108)
.+
T Consensus 277 ~l------------------------------------------------------------------------------ 278 (399)
T KOG0296|consen 277 EL------------------------------------------------------------------------------ 278 (399)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred cCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecC
Q 001279 425 EFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD 504 (1108)
Q Consensus 425 ~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~D 504 (1108)
.+-++..+.+..++ ..+..=.+.|+|+-|
T Consensus 279 -----~~~~e~~~esve~~----------------------------------------------~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 279 -----KPSQEELDESVESI----------------------------------------------PSSSKLPLAACGSVD 307 (399)
T ss_pred -----cccchhhhhhhhhc----------------------------------------------ccccccchhhccccc
Confidence 00001111111111 112222378999999
Q ss_pred CcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccce
Q 001279 505 GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1108)
Q Consensus 505 GtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~ 584 (1108)
|+|-|||.....++. .-.|..+|+.|-|-+ ..+|++++.+|.|+.||-++.
T Consensus 308 G~i~iyD~a~~~~R~------------~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG---------------- 358 (399)
T KOG0296|consen 308 GTIAIYDLAASTLRH------------ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG---------------- 358 (399)
T ss_pred ceEEEEecccchhhe------------eccCCCceEEEEEcC-cchheeeccCceEEeeecccc----------------
Confidence 999999999988772 335777899999998 889999999999999999887
Q ss_pred eecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001279 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1108)
Q Consensus 585 ~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~ 633 (1108)
+++.++.+|+.+|.+++++|+.++++++++|++.+|+++.
T Consensus 359 ---------~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 ---------QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ---------ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 5789999999999999999999999999999999999864
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=3.4e-29 Score=266.89 Aligned_cols=324 Identities=16% Similarity=0.233 Sum_probs=255.7
Q ss_pred eCCCCCCEEEEEEeeCCC-EEEEEeCCCcEEEEEcCCC--eee------ee-------ecCCCCeeEEEEecCCCEEEEE
Q 001279 72 ISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESR--SLA------CC-------LKWESNITAFSVISGSHFMYIG 135 (1108)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~vWd~~s~--~~~------~~-------~~~~~~Itsl~~~~~~~~l~vg 135 (1108)
...|+.+|.+.+|.|-.. .|++++.|-..++|++... ... +. ..-...||+++|+.+|.+|++|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 334999999999999544 8899999999999998751 111 11 1123579999999999999999
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE
Q 001279 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1108)
Q Consensus 136 ~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~ 215 (1108)
+.+|.++||+.+ |.+... +..|. ++|.++.|+- .|+++++++.|+++.+||..++.+...
T Consensus 254 ~~~G~~riw~~~---G~l~~t---l~~Hk------------gPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 254 SEDGEARIWNKD---GNLIST---LGQHK------------GPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred ecCcEEEEEecC---chhhhh---hhccC------------CceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEe
Confidence 999999999987 445432 55555 8999999955 799999999999999999999987665
Q ss_pred eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCc
Q 001279 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNN 295 (1108)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~ 295 (1108)
+.. + ..+-..+.|. +...+++.+.||.|+++.+...
T Consensus 314 f~~---------~--------------------s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~------------- 349 (524)
T KOG0273|consen 314 FEF---------H--------------------SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED------------- 349 (524)
T ss_pred eee---------c--------------------cCCccceEEe--cCceEeecCCCceEEEEEecCC-------------
Confidence 532 1 2222457786 3456899999999999877422
Q ss_pred eeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEE
Q 001279 296 VVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMI 375 (1108)
Q Consensus 296 ~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~ 375 (1108)
.|+..+
T Consensus 350 ------------~P~~t~-------------------------------------------------------------- 355 (524)
T KOG0273|consen 350 ------------RPVKTF-------------------------------------------------------------- 355 (524)
T ss_pred ------------Ccceee--------------------------------------------------------------
Confidence 111111
Q ss_pred EecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhh
Q 001279 376 LLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGL 455 (1108)
Q Consensus 376 ~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~ 455 (1108)
T Consensus 356 -------------------------------------------------------------------------------- 355 (524)
T KOG0273|consen 356 -------------------------------------------------------------------------------- 355 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCC
Q 001279 456 SEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGS 535 (1108)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h 535 (1108)
.| |.++++.+.+.|.+.+|+|++.|+|++||......+. ..+..|
T Consensus 356 -----------------------~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~-----------~~l~~H 400 (524)
T KOG0273|consen 356 -----------------------IG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV-----------HDLQAH 400 (524)
T ss_pred -----------------------ec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch-----------hhhhhh
Confidence 11 2233334455667779999999999999997766544 468899
Q ss_pred CCCeEEEEEEeCCC---------eEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCE
Q 001279 536 RAPVSTLSFCFINS---------SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV 606 (1108)
Q Consensus 536 ~~~Vt~lafs~d~~---------~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~V 606 (1108)
+..|..+.|+|+|. .|++++.|++|++|+.... .|+.+|..|..+|
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------------------v~i~~f~kH~~pV 455 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------------------VPIHTLMKHQEPV 455 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------------------ceeEeeccCCCce
Confidence 99999999998763 7999999999999999886 5788899999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEE
Q 001279 607 RALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII 686 (1108)
Q Consensus 607 tslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~ 686 (1108)
.+|+|||+|+++|+|+.||.|.+|+++.+++.. . ..-...|..|.|+ ..++.|.
T Consensus 456 ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~---s-~~~~~~Ifel~Wn----------------------~~G~kl~ 509 (524)
T KOG0273|consen 456 YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK---S-YQGTGGIFELCWN----------------------AAGDKLG 509 (524)
T ss_pred EEEEecCCCcEEEecCCCCeeEeccccchheeE---e-ecCCCeEEEEEEc----------------------CCCCEEE
Confidence 999999999999999999999999999999883 3 2245679999999 4478899
Q ss_pred EEcCCccEEEEeC
Q 001279 687 VLFKDAKISIVGG 699 (1108)
Q Consensus 687 s~s~Dg~v~v~d~ 699 (1108)
++-.|+.+||.|.
T Consensus 510 ~~~sd~~vcvldl 522 (524)
T KOG0273|consen 510 ACASDGSVCVLDL 522 (524)
T ss_pred EEecCCCceEEEe
Confidence 9999999999996
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=9.5e-29 Score=248.88 Aligned_cols=291 Identities=12% Similarity=0.175 Sum_probs=236.7
Q ss_pred EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCC-CCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~-~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
..+.+|.+.|.++.|++|+++|+|+|+||.+.|||.-+....+.+..+ .-|..++|+|.++++|+|+-|....|+++..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 578899999999999999999999999999999998888777777655 4699999999999999999999999999875
Q ss_pred CC-CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCccccccc
Q 001279 149 DE-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDG 226 (1108)
Q Consensus 149 ~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~ 226 (1108)
.+ ....+..-.+++|. +.+.|+.|-+ ++. |++++.|.+..+||+++++.+. +.||
T Consensus 129 ~d~~g~~~v~r~l~gHt------------gylScC~f~d--D~~-ilT~SGD~TCalWDie~g~~~~~f~GH-------- 185 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHT------------GYLSCCRFLD--DNH-ILTGSGDMTCALWDIETGQQTQVFHGH-------- 185 (343)
T ss_pred ccccccceeeeeecCcc------------ceeEEEEEcC--CCc-eEecCCCceEEEEEcccceEEEEecCC--------
Confidence 42 11222224477776 8899999944 554 9999999999999999997655 5567
Q ss_pred ccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC-CCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccccc
Q 001279 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1108)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~ 305 (1108)
.+.|.++.. +| +++.+++|+.|+..++||+..+...+
T Consensus 186 ----------------------~gDV~slsl-~p~~~ntFvSg~cD~~aklWD~R~~~c~q------------------- 223 (343)
T KOG0286|consen 186 ----------------------TGDVMSLSL-SPSDGNTFVSGGCDKSAKLWDVRSGQCVQ------------------- 223 (343)
T ss_pred ----------------------cccEEEEec-CCCCCCeEEecccccceeeeeccCcceeE-------------------
Confidence 788999995 47 99999999999999999997541000
Q ss_pred CCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCC
Q 001279 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1108)
Q Consensus 306 ~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~ 385 (1108)
T Consensus 224 -------------------------------------------------------------------------------- 223 (343)
T KOG0286|consen 224 -------------------------------------------------------------------------------- 223 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhcccc
Q 001279 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1108)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1108)
T Consensus 224 -------------------------------------------------------------------------------- 223 (343)
T KOG0286|consen 224 -------------------------------------------------------------------------------- 223 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEE
Q 001279 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1108)
Q Consensus 466 ~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1108)
...||...++.+.|.|+|.-++||++|++.|+||+....-..+|.- ..-..+|++++||
T Consensus 224 ------------tF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---------~~~~~gitSv~FS 282 (343)
T KOG0286|consen 224 ------------TFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---------DSIICGITSVAFS 282 (343)
T ss_pred ------------eecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---------CcccCCceeEEEc
Confidence 0012223334456778888999999999999999998764444431 2233589999999
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCC
Q 001279 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1108)
Q Consensus 546 ~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG 625 (1108)
..|++|..|..|.++.+||.-... -+..+.+|...|+||..+|||.-||+|+.|.
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e-------------------------~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGE-------------------------RVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred ccccEEEeeecCCceeEeeccccc-------------------------eEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 999999999999999999976652 3466789999999999999999999999999
Q ss_pred eEEEEE
Q 001279 626 RVAVLD 631 (1108)
Q Consensus 626 ~V~vwd 631 (1108)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=3e-28 Score=245.31 Aligned_cols=215 Identities=17% Similarity=0.229 Sum_probs=179.8
Q ss_pred CCCccccccceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC-cceEEeCCCCCCEEEEEEeeCCCEEEEEe
Q 001279 17 GSLTAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISIT 95 (1108)
Q Consensus 17 ~~l~~~~~~~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~L~S~s 95 (1108)
+.+..-.+..| ...-||-+.|.++.|++|.++|++++.||++.|||.-+ ..+..+.--..+|..++|+|.|.++++++
T Consensus 38 ~~~~~i~~~~r-r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 38 ESVGRIQMRTR-RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred ccceeeeeeeE-EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC
Confidence 34444455555 33459999999999999999999999999999999843 34444445567999999999999999999
Q ss_pred CCCcEEEEEcCCC--e----eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001279 96 NDNEIQVWSLESR--S----LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1108)
Q Consensus 96 ~d~~I~vWd~~s~--~----~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1108)
-|+...||++.++ + ....+ .|.+-+.|+.|-. ..+|++|+.|.+.-+||++. +...+. +.+|.
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~--g~~~~~---f~GH~---- 186 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET--GQQTQV---FHGHT---- 186 (343)
T ss_pred cCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc--ceEEEE---ecCCc----
Confidence 9999999999876 2 22223 7889999999987 67789999999999999886 455533 77887
Q ss_pred cCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCC
Q 001279 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1108)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1108)
+-|.++.+.|+ +++.+++|+-|+..+|||++++..+. +.||
T Consensus 187 --------gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh----------------------------- 228 (343)
T KOG0286|consen 187 --------GDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH----------------------------- 228 (343)
T ss_pred --------ccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeeccc-----------------------------
Confidence 88999999997 67779999999999999999997654 5677
Q ss_pred CCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+..|.+++|+ |+|.-+++|+.|++.++||+...
T Consensus 229 -esDINsv~ff-P~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 229 -ESDINSVRFF-PSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred -ccccceEEEc-cCCCeeeecCCCceeEEEeecCC
Confidence 8899999999 99999999999999999999643
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.1e-28 Score=260.91 Aligned_cols=334 Identities=19% Similarity=0.263 Sum_probs=256.4
Q ss_pred eeeCCCCCceEEEEcCCCC-EEEEEECCCcEEEEecCC------cceEEeC---------CCCCCEEEEEEeeCCCEEEE
Q 001279 30 VHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDG------IEGLLIS---------PSQLPYKNLEFLQNQGFLIS 93 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~-~LA~Gs~dG~I~iw~~~~------~~~~~~~---------~h~~~V~~l~fs~d~~~L~S 93 (1108)
.--+|.+.|.+.+|+|-.. +||+|+.|-..++|++.. .+..+.+ +.+..|++|+|+.+|..|++
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 3345889999999999777 999999999999999853 1111111 12347999999999999999
Q ss_pred EeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001279 94 ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 94 ~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1108)
++.||.+++|+...........|.++|.++.|+..+.||++++.||++-+||.-. ++..+. ++-|.
T Consensus 253 G~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~--g~~~q~---f~~~s--------- 318 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT--GTVKQQ---FEFHS--------- 318 (524)
T ss_pred eecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC--ceEEEe---eeecc---------
Confidence 9999999999998777777779999999999999999999999999999999654 444432 33333
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCce
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 252 (1108)
.+-..|.|.- +.. +++.+.||.|+|+-+...+. ..+.|| .++|
T Consensus 319 ---~~~lDVdW~~--~~~-F~ts~td~~i~V~kv~~~~P~~t~~GH------------------------------~g~V 362 (524)
T KOG0273|consen 319 ---APALDVDWQS--NDE-FATSSTDGCIHVCKVGEDRPVKTFIGH------------------------------HGEV 362 (524)
T ss_pred ---CCccceEEec--Cce-EeecCCCceEEEEEecCCCcceeeecc------------------------------cCce
Confidence 3336677743 444 99999999999999988866 456677 8899
Q ss_pred eEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEE
Q 001279 253 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVY 332 (1108)
Q Consensus 253 tsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~ 332 (1108)
.++-|. |.|..|++++.|+++++|++....... .+...+ ..
T Consensus 363 ~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~~-----------~l~~Hs----ke----------------------- 403 (524)
T KOG0273|consen 363 NALKWN-PTGSLLASCSDDGTLKIWSMGQSNSVH-----------DLQAHS----KE----------------------- 403 (524)
T ss_pred EEEEEC-CCCceEEEecCCCeeEeeecCCCcchh-----------hhhhhc----cc-----------------------
Confidence 999997 999999999999999999986431100 000000 00
Q ss_pred eCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeec
Q 001279 333 GGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 412 (1108)
Q Consensus 333 gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~ 412 (1108)
|..+.++|..
T Consensus 404 --------------------------------------i~t~~wsp~g-------------------------------- 413 (524)
T KOG0273|consen 404 --------------------------------------IYTIKWSPTG-------------------------------- 413 (524)
T ss_pred --------------------------------------eeeEeecCCC--------------------------------
Confidence 1111111110
Q ss_pred cccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccC
Q 001279 413 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCH 492 (1108)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s 492 (1108)
|.+ ...
T Consensus 414 ----------------------------------------------------------------~v~----------~n~ 419 (524)
T KOG0273|consen 414 ----------------------------------------------------------------PVT----------SNP 419 (524)
T ss_pred ----------------------------------------------------------------Ccc----------CCC
Confidence 000 112
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCc
Q 001279 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1108)
Q Consensus 493 ~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~ 572 (1108)
..+..+++++.|++|++||+..+.+. ..+-.|..+|.+|+|+|+|+|||+|+.||.|.+|......
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~gv~i-----------~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~--- 485 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESGVPI-----------HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK--- 485 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCCcee-----------EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh---
Confidence 23347999999999999999998866 4466899999999999999999999999999999988762
Q ss_pred cccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001279 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1108)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~ 633 (1108)
++..+ .-.+.|..|+|+-+|.+|+....||.+++.|++
T Consensus 486 ----------------------l~~s~-~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 486 ----------------------LVKSY-QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ----------------------eeEee-cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 23333 345669999999999999999999999999985
No 21
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-26 Score=262.98 Aligned_cols=512 Identities=16% Similarity=0.197 Sum_probs=331.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-ee-
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SL- 110 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~- 110 (1108)
.+|..|+|+|-+.+.-+.|.| ..|.+|-......-+..+|.+.|..+.-. |.+|+++..++.|.||+..+. +.
T Consensus 74 ~lp~~I~alas~~~~vy~A~g---~~i~~~~rgk~i~~~~~~~~a~v~~l~~f--Ge~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASG---NKIYAYARGKHIRHTTLLHGAKVHLLLPF--GEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecC---cEEEEEEccceEEEEeccccceEEEEeee--cceEEEEEccCcEEEEEeccccccc
Confidence 588999999887555555444 45999988877777888888888887544 567999999999999999884 21
Q ss_pred ---eeeecCCC-CeeEEEEecCC--CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 111 ---ACCLKWES-NITAFSVISGS--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 111 ---~~~~~~~~-~Itsl~~~~~~--~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
+..+.... .|+++. +|.. +-+++|++.|.+.+|++.+ ++++ |.++++. ..|+++..
T Consensus 149 ~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt--~K~v---~~f~~~~------------s~IT~ieq 210 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRT--GKVV---YTFQEFF------------SRITAIEQ 210 (910)
T ss_pred cccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEecc--CcEE---EEecccc------------cceeEecc
Confidence 12223232 288774 3443 7899999999999999986 5666 6677765 77999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS- 263 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~- 263 (1108)
+|. -..+++|..+|.|.++|++.++++..+.| ..++|+++.|. .||.
T Consensus 211 sPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~-----------------------------d~g~VtslSFr-tDG~p 258 (910)
T KOG1539|consen 211 SPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQ-----------------------------DWGRVTSLSFR-TDGNP 258 (910)
T ss_pred CCc--ceEEEEeccCceEEEEEcccCcEEEEEEc-----------------------------cccceeEEEec-cCCCe
Confidence 995 44699999999999999999999888766 04899999975 8886
Q ss_pred EEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceE
Q 001279 264 ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVL 343 (1108)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~l 343 (1108)
.|++|+..|.+.+||++.......... .|..+.....+-....++++.|.|.
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~n----------------------ah~~sv~~~~fl~~epVl~ta~~Dn------ 310 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRN----------------------AHYGSVTGATFLPGEPVLVTAGADN------ 310 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeec----------------------cccCCcccceecCCCceEeeccCCC------
Confidence 567777889999999986532211000 1111111112334455666666664
Q ss_pred EEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCC--CCC
Q 001279 344 TVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKK--PSV 421 (1108)
Q Consensus 344 tvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~--~~~ 421 (1108)
-+++|-..-.....+.-|..-+...|...+.+.-..+ ..+.....+..+..|+...... ..+-+. ...
T Consensus 311 -Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g-------~~ilsa~~Drt~r~fs~~~e~~--~~~l~~~~~~~ 380 (910)
T KOG1539|consen 311 -SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG-------HFILSAKQDRTLRSFSVISESQ--SQELGQLHNKK 380 (910)
T ss_pred -ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc-------EEEEecccCcchhhhhhhHHHH--hHhhccccccc
Confidence 3333321100111111112122222332222221110 0111112222222222111000 000000 000
Q ss_pred C--CccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCccccc----ccCC----------cccC
Q 001279 422 C--PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWP----LSGG----------VPSP 485 (1108)
Q Consensus 422 ~--~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp----~~gg----------~~~~ 485 (1108)
. ....-....+..++|+..++.. .....|..+....+... ....|. ..|. ....
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~-----~RE~~W~Nv~~~h~~~~-----~~~tW~~~n~~~G~~~L~~~~~~~~~~~ 450 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFEN-----AREKEWDNVITAHKGKR-----SAYTWNFRNKTSGRHVLDPKRFKKDDIN 450 (910)
T ss_pred ccccccccchhhhcCCcceeeeccc-----chhhhhcceeEEecCcc-----eEEEEeccCcccccEEecCccccccCcc
Confidence 0 0011112223445565555421 11123444433322211 011111 0111 1123
Q ss_pred CCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEe
Q 001279 486 VPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNL 565 (1108)
Q Consensus 486 ~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l 565 (1108)
+.+++.++.|++.+.|+..|+|.++|++.+..+..|. .-..|..+|+.|+.+.-++.+++++.+|.+++|++
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG--------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc--------cCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 3455889999999999999999999999998763331 12478999999999999999999999999999999
Q ss_pred cCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCC
Q 001279 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1108)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~ 645 (1108)
.... ++..+ .....++++.++....++|++.+|=.|+++|+.+.+++ +.+.
T Consensus 523 ~~k~-------------------------l~~~l-~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv---R~f~ 573 (910)
T KOG1539|consen 523 KKKV-------------------------LKKSL-RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV---REFW 573 (910)
T ss_pred CCcc-------------------------eeeee-ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh---HHhh
Confidence 8862 12222 34677899999998889999999999999999999988 7889
Q ss_pred CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceec
Q 001279 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1108)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~ 706 (1108)
||...|+++.|+ |++.+|++++.|++|++||..||.+|-
T Consensus 574 gh~nritd~~FS----------------------~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 574 GHGNRITDMTFS----------------------PDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred ccccceeeeEeC----------------------CCCcEEEEeecCCcEEEEeccCcceee
Confidence 999999999999 779999999999999999999988874
No 22
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=2.6e-26 Score=246.19 Aligned_cols=408 Identities=17% Similarity=0.214 Sum_probs=279.5
Q ss_pred eeee-CCCCCceEEEEcCCCCEEEEEECCCc--------EEEEecCCcceEE-eCCCCCCEEEEEEee-C-CCEEEEEeC
Q 001279 29 AVHY-GIPATASILAFDHIQRLLAIATLDGR--------IKVIGGDGIEGLL-ISPSQLPYKNLEFLQ-N-QGFLISITN 96 (1108)
Q Consensus 29 ~~~~-G~~~~is~la~sp~~~~LA~Gs~dG~--------I~iw~~~~~~~~~-~~~h~~~V~~l~fs~-d-~~~L~S~s~ 96 (1108)
..|| ||...|.|++.+|+.-++|+|-..|+ ++|||-.....+. +......|++++|++ + |.+|.....
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecC
Confidence 4455 99999999999999999999877764 9999975554442 224556899999998 3 445555543
Q ss_pred --CCcEEEEEcCCCeeeeeec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001279 97 --DNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 97 --d~~I~vWd~~s~~~~~~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1108)
+..+.|||++.+..+.... ....|....|+|...-+.+....|.+++|.+.. +.+.+..-.+..+++
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~--~~l~k~~~~fek~ek-------- 246 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG--GSLVKRQGIFEKREK-------- 246 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC--CceEEEeeccccccc--------
Confidence 5569999999987765553 456788899999998888888889999997664 445443222222221
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCce
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 252 (1108)
..|.||+|.+ +|+ +++|.++|.|.||+..+.++.. ...| ++.|
T Consensus 247 ---k~Vl~v~F~e--ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH------------------------------~ggv 290 (626)
T KOG2106|consen 247 ---KFVLCVTFLE--NGD-VITGDSGGNILIWSKGTNRISKQVHAH------------------------------DGGV 290 (626)
T ss_pred ---eEEEEEEEcC--CCC-EEeecCCceEEEEeCCCceEEeEeeec------------------------------CCce
Confidence 5699999976 777 9999999999999998877643 2344 8899
Q ss_pred eEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEE
Q 001279 253 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVY 332 (1108)
Q Consensus 253 tsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~ 332 (1108)
.++|-. .+|. |++|+.|..|..||- ... +...+.+.. ...++..+ ....+. ++.
T Consensus 291 ~~L~~l-r~Gt-llSGgKDRki~~Wd~-~y~-----------k~r~~elPe--~~G~iRtv---------~e~~~d-i~v 344 (626)
T KOG2106|consen 291 FSLCML-RDGT-LLSGGKDRKIILWDD-NYR-----------KLRETELPE--QFGPIRTV---------AEGKGD-ILV 344 (626)
T ss_pred EEEEEe-cCcc-EeecCccceEEeccc-ccc-----------ccccccCch--hcCCeeEE---------ecCCCc-EEE
Confidence 999965 7776 566999999999992 211 111111111 11122222 111111 222
Q ss_pred eCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeec
Q 001279 333 GGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 412 (1108)
Q Consensus 333 gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~ 412 (1108)
|... +.++.-.....
T Consensus 345 GTtr-------------------------------------------------------------N~iL~Gt~~~~---- 359 (626)
T KOG2106|consen 345 GTTR-------------------------------------------------------------NFILQGTLENG---- 359 (626)
T ss_pred eecc-------------------------------------------------------------ceEEEeeecCC----
Confidence 2111 11111000000
Q ss_pred cccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccC
Q 001279 413 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCH 492 (1108)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s 492 (1108)
.+ +..-||..+..-++.+
T Consensus 360 ------------------------f~--------------------------------------~~v~gh~delwgla~h 377 (626)
T KOG2106|consen 360 ------------------------FT--------------------------------------LTVQGHGDELWGLATH 377 (626)
T ss_pred ------------------------ce--------------------------------------EEEEecccceeeEEcC
Confidence 00 0111222233445788
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCc
Q 001279 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1108)
Q Consensus 493 ~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~ 572 (1108)
|+.++|+|+++|+.|++|+ ...+. .. ..+ ..++.|++|+|.| .+|.|...|...|.|..+.
T Consensus 378 ps~~q~~T~gqdk~v~lW~--~~k~~--wt-------~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---- 438 (626)
T KOG2106|consen 378 PSKNQLLTCGQDKHVRLWN--DHKLE--WT-------KII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---- 438 (626)
T ss_pred CChhheeeccCcceEEEcc--CCcee--EE-------EEe---cCceeEeeccCcc-eEEEeeccceEEEEecccc----
Confidence 9999999999999999999 22222 11 111 2379999999999 9999999999999998774
Q ss_pred cccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEEeecCCCCCCce
Q 001279 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS-VLFFTDDISGSSSPI 651 (1108)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~-~~~~~~~~~~h~~~V 651 (1108)
-..+...-+.++++|+|+|+|.+||+|+.|+.|+||-+.... ..-..... |-++|
T Consensus 439 ----------------------~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~i 494 (626)
T KOG2106|consen 439 ----------------------DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPI 494 (626)
T ss_pred ----------------------eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCcee
Confidence 123344448999999999999999999999999999986543 33223332 33999
Q ss_pred EEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
+.|.|+ +++++|.+-+-|-.|..|...
T Consensus 495 thLDwS----------------------~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 495 THLDWS----------------------SDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEeeec----------------------CCCceEEeccCceEEEEEccc
Confidence 999999 568899999999999999543
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=235.44 Aligned_cols=298 Identities=13% Similarity=0.145 Sum_probs=234.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeecCC-CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001279 89 GFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~~~~~~~~~~-~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1108)
-+|+|++.|.+|++|...+|.+..+++|. +.|..+.+.|++++|++++.- .|+++|+........ ..+.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv---~t~e~h~--- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPV---ATFEGHT--- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCce---eEEeccC---
Confidence 57999999999999999999999999886 689999999999999988754 489999876543333 2356665
Q ss_pred ccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCC
Q 001279 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1108)
..|++|.|+- +|..+++|+.||+++|||++.-.+...+.|
T Consensus 84 ---------kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR~~~~----------------------------- 123 (311)
T KOG0315|consen 84 ---------KNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQRNYQH----------------------------- 123 (311)
T ss_pred ---------CceEEEEEee--cCeEEEecCCCceEEEEeccCcccchhccC-----------------------------
Confidence 6799999965 899999999999999999999766666666
Q ss_pred CCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCc
Q 001279 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDG 327 (1108)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~ 327 (1108)
..+|++++-+ |+...|++|..+|.|++||+....... .+ .+++.
T Consensus 124 -~spVn~vvlh-pnQteLis~dqsg~irvWDl~~~~c~~-------------~l---------------------iPe~~ 167 (311)
T KOG0315|consen 124 -NSPVNTVVLH-PNQTELISGDQSGNIRVWDLGENSCTH-------------EL---------------------IPEDD 167 (311)
T ss_pred -CCCcceEEec-CCcceEEeecCCCcEEEEEccCCcccc-------------cc---------------------CCCCC
Confidence 7789999965 999999999999999999996431000 00 00000
Q ss_pred eEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccc
Q 001279 328 RLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNAS 407 (1108)
Q Consensus 328 ~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~ 407 (1108)
T Consensus 168 -------------------------------------------------------------------------------- 167 (311)
T KOG0315|consen 168 -------------------------------------------------------------------------------- 167 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCC
Q 001279 408 LTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVP 487 (1108)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~ 487 (1108)
..+.
T Consensus 168 ----------------------------------------------------------------------------~~i~ 171 (311)
T KOG0315|consen 168 ----------------------------------------------------------------------------TSIQ 171 (311)
T ss_pred ----------------------------------------------------------------------------ccee
Confidence 0001
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecC
Q 001279 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 488 ~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
.+.+.+||..++.+..-|+.++|++-+....-.+. ++ ..+..|..-|..+-||||+++||+++.|.+|+||+.+.
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~---P~--~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE---PV--HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccce---Eh--hheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 12466788899999999999999987643221000 00 23678999999999999999999999999999999877
Q ss_pred CCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCC
Q 001279 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 647 (1108)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h 647 (1108)
. +..-..+.+|+.-|+..+||.||++|++|+.|+++++||+..++.+ ..+.+|
T Consensus 247 ~------------------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v---~qy~gh 299 (311)
T KOG0315|consen 247 F------------------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV---RQYQGH 299 (311)
T ss_pred c------------------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee---eecCCc
Confidence 4 1244677899999999999999999999999999999999999877 455678
Q ss_pred CCceEEEEee
Q 001279 648 SSPIISMTWT 657 (1108)
Q Consensus 648 ~~~V~~l~fs 657 (1108)
..+-.+++..
T Consensus 300 ~K~~vc~~ln 309 (311)
T KOG0315|consen 300 HKAAVCVALN 309 (311)
T ss_pred ccccEEEEee
Confidence 7776666543
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1e-27 Score=236.00 Aligned_cols=185 Identities=19% Similarity=0.285 Sum_probs=149.4
Q ss_pred CCEEEEEECCCcEEEEecCCcceEEeCCC-CCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCee--eeee-cCCCCeeE
Q 001279 47 QRLLAIATLDGRIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL--ACCL-KWESNITA 122 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h-~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~--~~~~-~~~~~Its 122 (1108)
.-+||+++.|-+||+|...+..+.....| .+.|..|+..|+++.|++++ ...|++||+.+... +.++ .|...|++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 45899999999999999976666655555 56899999999998888887 67899999998864 5555 67799999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeE
Q 001279 123 FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALV 202 (1108)
Q Consensus 123 l~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V 202 (1108)
+.|..++++|++|++||+++||++... . .+..|..+ .+|++|..||. ...|+++..+|.|
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~--~-~qR~~~~~---------------spVn~vvlhpn--QteLis~dqsg~i 148 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSL--S-CQRNYQHN---------------SPVNTVVLHPN--QTELISGDQSGNI 148 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCc--c-cchhccCC---------------CCcceEEecCC--cceEEeecCCCcE
Confidence 999999999999999999999998752 1 11113333 77999999994 4559999999999
Q ss_pred EEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 203 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 203 ~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
++||+.+..+....-. +....|+++.-. |||++|+.+-..|..++|++..
T Consensus 149 rvWDl~~~~c~~~liP----------------------------e~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIP----------------------------EDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred EEEEccCCccccccCC----------------------------CCCcceeeEEEc-CCCcEEEEecCCccEEEEEccC
Confidence 9999998754332211 125678999955 9999999999999999999864
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-27 Score=238.50 Aligned_cols=204 Identities=18% Similarity=0.222 Sum_probs=175.4
Q ss_pred eCCCCCceEEEEcCC-CCEEEEEECCCcEEEEecCCc------ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001279 32 YGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 32 ~G~~~~is~la~sp~-~~~LA~Gs~dG~I~iw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd 104 (1108)
.||++.|+.++..+. ...|..++.|..|.+|++... -+..+.+|..-|+.+..++||.+.+|++.|+++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 489999999999987 568899999999999998543 2346778999999999999999999999999999999
Q ss_pred cCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 105 LESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 105 ~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
+.+++....+ .|...|++++|+++...+++|+.|.+|++|+.-. .+. |++..+. +.++|.||.
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g---~ck---~t~~~~~----------~~~WVscvr 155 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG---VCK---YTIHEDS----------HREWVSCVR 155 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc---cEE---EEEecCC----------CcCcEEEEE
Confidence 9999777666 8999999999999999999999999999999753 232 5565442 028999999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
|+|......+++++.|++|++||+.+-++.. +.|| .+-|+.+. +||||
T Consensus 156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh------------------------------~~~v~t~~-vSpDG 204 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH------------------------------SGYVNTVT-VSPDG 204 (315)
T ss_pred EcCCCCCcEEEEccCCceEEEEccCCcchhhccccc------------------------------cccEEEEE-ECCCC
Confidence 9998666779999999999999999987754 5566 77788888 47999
Q ss_pred CEEEEEEccCcEEEEecCCC
Q 001279 263 SILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...++|+.||.+.+||+..+
T Consensus 205 slcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 205 SLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CEEecCCCCceEEEEEccCC
Confidence 99999999999999999754
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-26 Score=251.47 Aligned_cols=200 Identities=14% Similarity=0.258 Sum_probs=173.0
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~ 113 (1108)
...|.++.|+|...++.++-.+|.|.|||.++...+ ...-...||++..|......++++++|..|+|+|..+.+.++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE
Confidence 456899999999999999999999999999876654 4444667999999999999999999999999999999998888
Q ss_pred e-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 114 L-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 114 ~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
+ .|..-|.|++++|..+++++++.|-+|++|+++.. -.+. ..+.+|. ..|++|+|+|.+ .+.
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~---qtfeGH~------------HyVMqv~fnPkD-~nt 155 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACE---QTFEGHE------------HYVMQVAFNPKD-PNT 155 (794)
T ss_pred eeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeee---eEEcCcc------------eEEEEEEecCCC-ccc
Confidence 7 78899999999999999999999999999999853 2233 4477887 779999999985 445
Q ss_pred EEEEECCCeEEEEEccCCeE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC--CEEEEEE
Q 001279 193 VLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG--SILAVGY 269 (1108)
Q Consensus 193 ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg--~~l~sg~ 269 (1108)
+++++-|++|+||.+.+... .++.+| ++.|.|+++. +-| .+|++|+
T Consensus 156 FaS~sLDrTVKVWslgs~~~nfTl~gH------------------------------ekGVN~Vdyy-~~gdkpylIsga 204 (794)
T KOG0276|consen 156 FASASLDRTVKVWSLGSPHPNFTLEGH------------------------------EKGVNCVDYY-TGGDKPYLISGA 204 (794)
T ss_pred eeeeeccccEEEEEcCCCCCceeeecc------------------------------ccCcceEEec-cCCCcceEEecC
Confidence 99999999999999988765 445677 8899999987 444 4999999
Q ss_pred ccCcEEEEecCCC
Q 001279 270 IDGDILLWNTSTT 282 (1108)
Q Consensus 270 ~DG~I~lWd~~~~ 282 (1108)
.|.+|++||..+.
T Consensus 205 DD~tiKvWDyQtk 217 (794)
T KOG0276|consen 205 DDLTIKVWDYQTK 217 (794)
T ss_pred CCceEEEeecchH
Confidence 9999999999653
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=7.8e-27 Score=241.99 Aligned_cols=338 Identities=15% Similarity=0.201 Sum_probs=254.7
Q ss_pred ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEE
Q 001279 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1108)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~ 146 (1108)
.+..+..|..+|-+++.+|+...+++++.|..-.+|++.++..+..+ .|...|+++.|+.++.+||+|+-+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 44567789999999999999999999999999999999999877666 89999999999999999999999999999998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC-eEEEEeCCCcccccc
Q 001279 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKD 225 (1108)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~-~~~~~~~~~~~~~~~ 225 (1108)
... ... +.+...- ..+.=+.||| .+..|+.|+.||.+-.|.+.++ .+..+.||
T Consensus 136 stg--~~~---~~~~~e~------------~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh------- 189 (399)
T KOG0296|consen 136 STG--GEQ---WKLDQEV------------EDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGH------- 189 (399)
T ss_pred ccC--ceE---EEeeccc------------CceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCC-------
Confidence 763 332 1232111 5588999999 5777999999999999999984 55566677
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccccc
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~ 305 (1108)
..++++-++. |+|+.+++++.||+|++||..+++ ++.++...
T Consensus 190 -----------------------~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~-----------p~~~~~~~--- 231 (399)
T KOG0296|consen 190 -----------------------NSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQ-----------PLHKITQA--- 231 (399)
T ss_pred -----------------------CCCccccccc-CCCceEEEEecCceEEEEecCCCc-----------eeEEeccc---
Confidence 6778888865 999999999999999999998762 22211100
Q ss_pred CCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCC
Q 001279 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1108)
Q Consensus 306 ~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~ 385 (1108)
++
T Consensus 232 ------------------------------e~------------------------------------------------ 233 (399)
T KOG0296|consen 232 ------------------------------EG------------------------------------------------ 233 (399)
T ss_pred ------------------------------cc------------------------------------------------
Confidence 00
Q ss_pred CCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhcccc
Q 001279 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1108)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1108)
T Consensus 234 -------------------------------------------------------------------------------- 233 (399)
T KOG0296|consen 234 -------------------------------------------------------------------------------- 233 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEE---
Q 001279 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTL--- 542 (1108)
Q Consensus 466 ~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l--- 542 (1108)
.+..++.++..+..+++|+.++.+++-+..+++.. ...++.+. .....+...+.|+
T Consensus 234 ------------------~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv--~~~n~~~~-~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 234 ------------------LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV--NCNNGTVP-ELKPSQEELDESVESI 292 (399)
T ss_pred ------------------CcCCccccccccceeEeccCCccEEEEccccceEE--EecCCCCc-cccccchhhhhhhhhc
Confidence 00001122333335666666666666665555533 22221111 1122333444444
Q ss_pred EEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEe
Q 001279 543 SFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1108)
Q Consensus 543 afs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs 622 (1108)
.||..=.+.|+|+-||+|.|||+...+ +.....|..+|+.+.|-+ ..+|++++
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~--------------------------~R~~c~he~~V~~l~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAAST--------------------------LRHICEHEDGVTKLKWLN-TDYLLTAC 345 (399)
T ss_pred ccccccchhhcccccceEEEEecccch--------------------------hheeccCCCceEEEEEcC-cchheeec
Confidence 455555678999999999999998752 233456889999999999 67899999
Q ss_pred CCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 623 ~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
.+|.|+.||.+++.+++ .+.||..+|..+.++ |+++++++++.|+...|++..
T Consensus 346 ~~g~v~~wDaRtG~l~~---~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKF---TYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCceEEeeeccccceEE---EEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEecC
Confidence 99999999999999985 567899999999999 558899999999999999853
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=245.22 Aligned_cols=297 Identities=15% Similarity=0.214 Sum_probs=250.1
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-e
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-S 109 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~ 109 (1108)
.|+-..|+.+-|+|+-.++|++++|++|++||..+.+.. .+.+|...|..+.|+..|.+|++++.|-.+++||.++. +
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR 184 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH
Confidence 588899999999999999999999999999999766654 67789999999999999999999999999999999874 3
Q ss_pred eee-eecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 110 LAC-CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 110 ~~~-~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
++. ..+|...|.++.|-|.+.++++++.|.+|+.|++++ +-.. |.+++|. .+|..+.. ..
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g~cv---~t~~~h~------------ewvr~v~v--~~ 245 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT--GYCV---KTFPGHS------------EWVRMVRV--NQ 245 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc--ceeE---EeccCch------------HhEEEEEe--cC
Confidence 443 347888999999999999999999999999999986 3444 5688876 78998888 55
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEE-EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1108)
||..+++++.|.+|++|-+.++.+. ..++| +-+|.|+.|. |... ++
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~h------------------------------Eh~vEci~wa-p~~~--~~ 292 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAELREH------------------------------EHPVECIAWA-PESS--YP 292 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhhhcc------------------------------ccceEEEEec-cccc--Cc
Confidence 9999999999999999999998653 34555 6678888887 5332 00
Q ss_pred EEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEe
Q 001279 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1108)
Q Consensus 268 g~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~ 347 (1108)
++. . .+|
T Consensus 293 ----------~i~------------------------------------------~--------at~------------- 299 (406)
T KOG0295|consen 293 ----------SIS------------------------------------------E--------ATG------------- 299 (406)
T ss_pred ----------chh------------------------------------------h--------ccC-------------
Confidence 000 0 000
Q ss_pred ccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCC
Q 001279 348 LEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP 427 (1108)
Q Consensus 348 l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 427 (1108)
T Consensus 300 -------------------------------------------------------------------------------- 299 (406)
T KOG0295|consen 300 -------------------------------------------------------------------------------- 299 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcE
Q 001279 428 GVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSV 507 (1108)
Q Consensus 428 ~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtV 507 (1108)
-...++++.+|+.|++|
T Consensus 300 ---------------------------------------------------------------~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 300 ---------------------------------------------------------------STNGGQVLGSGSRDKTI 316 (406)
T ss_pred ---------------------------------------------------------------CCCCccEEEeecccceE
Confidence 00022378999999999
Q ss_pred EEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeec
Q 001279 508 RIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHAL 587 (1108)
Q Consensus 508 riWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~ 587 (1108)
|+||++++.|. .++.+|..-|..++|+|.|+||+++.+|+++++|++...
T Consensus 317 k~wdv~tg~cL-----------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~------------------- 366 (406)
T KOG0295|consen 317 KIWDVSTGMCL-----------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL------------------- 366 (406)
T ss_pred EEEeccCCeEE-----------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-------------------
Confidence 99999999877 678899999999999999999999999999999999987
Q ss_pred ccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001279 588 PEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1108)
Q Consensus 588 ~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~ 632 (1108)
+|..++..|..-|+++.|..+..++++|+-|.++++|.-
T Consensus 367 ------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 ------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 577888899999999999999999999999999999963
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.5e-27 Score=270.61 Aligned_cols=296 Identities=21% Similarity=0.305 Sum_probs=221.0
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001279 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~ 155 (1108)
...++|..|++|+..||.+-.|..|++|.+...++. .+.....+ ..+-+++.|-.+...|.+ .....
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~l---------~~~d~~sad~~~~~~D~~--~~~~~- 444 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-KLKDASDL---------SNIDTESADVDVDMLDDD--SSGTS- 444 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhc-cccchhhh---------ccccccccchhhhhcccc--CCcee-
Confidence 447999999999998888889999999998865322 22111110 111123333333333322 22222
Q ss_pred eceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCCcccccccccCCCCCC
Q 001279 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEG 234 (1108)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 234 (1108)
..+-+|. ++|.++.|+| +.+.|++++.|++||+|.+.+... +.+.||
T Consensus 445 --~~L~GH~------------GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~y~GH---------------- 492 (707)
T KOG0263|consen 445 --RTLYGHS------------GPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH---------------- 492 (707)
T ss_pred --EEeecCC------------Cceeeeeecc--cccceeeccCCcceeeeecccceeEEEecCC----------------
Confidence 2255666 9999999999 677899999999999999999865 556677
Q ss_pred CCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEE
Q 001279 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLH 314 (1108)
Q Consensus 235 ~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~ 314 (1108)
..+|..+.| +|.|-+++|++.|++.++|....... . .
T Consensus 493 --------------~~PVwdV~F-~P~GyYFatas~D~tArLWs~d~~~P-----------l--------------R--- 529 (707)
T KOG0263|consen 493 --------------LAPVWDVQF-APRGYYFATASHDQTARLWSTDHNKP-----------L--------------R--- 529 (707)
T ss_pred --------------CcceeeEEe-cCCceEEEecCCCceeeeeecccCCc-----------h--------------h---
Confidence 678888996 59999999999999999998753200 0 0
Q ss_pred eecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEE
Q 001279 315 WSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVL 394 (1108)
Q Consensus 315 ~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl 394 (1108)
T Consensus 530 -------------------------------------------------------------------------------- 529 (707)
T KOG0263|consen 530 -------------------------------------------------------------------------------- 529 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcc
Q 001279 395 TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHI 474 (1108)
Q Consensus 395 ~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1108)
T Consensus 530 -------------------------------------------------------------------------------- 529 (707)
T KOG0263|consen 530 -------------------------------------------------------------------------------- 529 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEE
Q 001279 475 KWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVG 554 (1108)
Q Consensus 475 ~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg 554 (1108)
+.-||-+.+.|+.|+|+..+++||+.|.+||+||+.++... ..+.||..+|++|+|||+|++|++|
T Consensus 530 ---ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-----------RiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 530 ---IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-----------RIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred ---hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-----------EEecCCCCceEEEEEcCCCceEeec
Confidence 00112222334578899999999999999999999998865 3467999999999999999999999
Q ss_pred ecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001279 555 NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1108)
Q Consensus 555 ~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~ 634 (1108)
+.||.|+|||+.... ++..+.+|.+.|.+|.||.+|..||+|+.|.+|++||+..
T Consensus 596 ~ed~~I~iWDl~~~~-------------------------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGS-------------------------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCc-------------------------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999998862 4567789999999999999999999999999999999865
Q ss_pred ceEE---------------------EEeecCCCCCCceEEEEeee
Q 001279 635 LSVL---------------------FFTDDISGSSSPIISMTWTE 658 (1108)
Q Consensus 635 ~~~~---------------------~~~~~~~~h~~~V~~l~fs~ 658 (1108)
.... +.+..+..-..+|..|.|+.
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 651 VIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred hcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEec
Confidence 3322 01223334456888888884
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-25 Score=252.59 Aligned_cols=223 Identities=13% Similarity=0.202 Sum_probs=168.3
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~ 113 (1108)
.+.|..++|+|...++.++-.+|.|++||..-..++ ...+|.+||+.++|+|.+.+++|+++|..|+||+..+++++.+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 345778999999999999999999999999765554 5668999999999999999999999999999999999988866
Q ss_pred e-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 114 L-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 114 ~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
+ +|-.-|..+.|++.-+|+++++.|.+|+||++.. ++++.. +.+|. ..|+|..|||+ ...
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs--r~~iav---ltGHn------------HYVMcAqFhpt--EDl 149 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS--RKCIAV---LTGHN------------HYVMCAQFHPT--EDL 149 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccC--CceEEE---EecCc------------eEEEeeccCCc--cce
Confidence 5 8999999999999999999999999999999986 344432 67776 77999999996 445
Q ss_pred EEEEECCCeEEEEEccCCeEEEEeCC-CcccccccccCCCCCCCCCcccCcC--CCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 193 VLIAYENALVILWDVSEAQIIFVGGG-KDLQLKDGVVDSPSEGDSTFLEGIS--EHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 193 ll~~~~dg~V~lWdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
+++++-|-+|||||++.-+....... -+.++..+-. .....+..+.+- ..+.++..|.-++|+ |.-..|++|+
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~---~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~ 225 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG---NSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGA 225 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhcccc---chhhcCCcCeeeeeeecccccccceEEec-CCcceEEecC
Confidence 99999999999999987543221110 0000000000 000000001111 112247778888876 7777888888
Q ss_pred ccCcEEEEecC
Q 001279 270 IDGDILLWNTS 280 (1108)
Q Consensus 270 ~DG~I~lWd~~ 280 (1108)
.|..|++|.+.
T Consensus 226 DDRqVKlWrmn 236 (1202)
T KOG0292|consen 226 DDRQVKLWRMN 236 (1202)
T ss_pred CcceeeEEEec
Confidence 88888888875
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.3e-27 Score=271.24 Aligned_cols=151 Identities=21% Similarity=0.284 Sum_probs=135.2
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCC
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~ 569 (1108)
.|+|.|-++|||+.|++-|+|........ ..+.+|-+.|.|+.|+|++.|+++|+.|.+||+|+..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~~~Pl-----------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G- 567 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDHNKPL-----------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG- 567 (707)
T ss_pred EecCCceEEEecCCCceeeeeecccCCch-----------hhhcccccccceEEECCcccccccCCCCceEEEEEcCCC-
Confidence 45566669999999999999998765433 236799999999999999999999999999999999887
Q ss_pred CCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCC
Q 001279 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1108)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~ 649 (1108)
..+..|.+|.++|++|+|||+|++||+|++||.|.+||+.+++++ ..+.+|.+
T Consensus 568 ------------------------~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v---~~l~~Ht~ 620 (707)
T KOG0263|consen 568 ------------------------NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV---KQLKGHTG 620 (707)
T ss_pred ------------------------cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch---hhhhcccC
Confidence 257889999999999999999999999999999999999999888 46678999
Q ss_pred ceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
.|.+|.|+ .++.+|++|+.|.+|.+||...
T Consensus 621 ti~SlsFS----------------------~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 621 TIYSLSFS----------------------RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ceeEEEEe----------------------cCCCEEEecCCCCeEEEEEchh
Confidence 99999999 5699999999999999999753
No 32
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=3e-26 Score=229.81 Aligned_cols=293 Identities=17% Similarity=0.206 Sum_probs=223.0
Q ss_pred cCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 115 KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.|++.|+.++..+. .+.++.++.|.++.+|++..++...-.....+.+|. ..|..+..++ +|++.
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs------------H~v~dv~~s~--dg~~a 78 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS------------HFVSDVVLSS--DGNFA 78 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc------------eEecceEEcc--CCceE
Confidence 78899999999987 468889999999999999875433322123466765 6688888877 89999
Q ss_pred EEEECCCeEEEEEccCCeE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC
Q 001279 194 LIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG 272 (1108)
++++.|+++++||+.+++. ..+.|| ...|.++++ ++|.+.|++|+.|.
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~GH------------------------------~~dVlsva~-s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVGH------------------------------TKDVLSVAF-STDNRQIVSGSRDK 127 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEec------------------------------CCceEEEEe-cCCCceeecCCCcc
Confidence 9999999999999999865 556677 788999995 59999999999999
Q ss_pred cEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccc
Q 001279 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1108)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1108)
+|++||..... + ++-+++.
T Consensus 128 Tiklwnt~g~c--------------k--------------------------------~t~~~~~--------------- 146 (315)
T KOG0279|consen 128 TIKLWNTLGVC--------------K--------------------------------YTIHEDS--------------- 146 (315)
T ss_pred eeeeeeecccE--------------E--------------------------------EEEecCC---------------
Confidence 99999985330 0 0000000
Q ss_pred cccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccC
Q 001279 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1108)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1108)
....+..+.|+|.
T Consensus 147 --------------~~~WVscvrfsP~----------------------------------------------------- 159 (315)
T KOG0279|consen 147 --------------HREWVSCVRFSPN----------------------------------------------------- 159 (315)
T ss_pred --------------CcCcEEEEEEcCC-----------------------------------------------------
Confidence 0001111122221
Q ss_pred CCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeC
Q 001279 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1108)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~ 512 (1108)
++..+|++++.|++||+||+
T Consensus 160 ------------------------------------------------------------~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 160 ------------------------------------------------------------ESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred ------------------------------------------------------------CCCcEEEEccCCceEEEEcc
Confidence 01338999999999999999
Q ss_pred CCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCc
Q 001279 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1108)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 592 (1108)
.+..+. ..+.+|+..|+.+++||||..+++|+.||.+.+||+....+
T Consensus 180 ~~~~l~-----------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~---------------------- 226 (315)
T KOG0279|consen 180 RNCQLR-----------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN---------------------- 226 (315)
T ss_pred CCcchh-----------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce----------------------
Confidence 988766 45779999999999999999999999999999999988732
Q ss_pred ceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeec-CCCC---CCce--EEEEeeecccCcccc
Q 001279 593 SLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD-ISGS---SSPI--ISMTWTEFKNTHSLA 666 (1108)
Q Consensus 593 ~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~-~~~h---~~~V--~~l~fs~~~~~~~~~ 666 (1108)
.....|...|.+++|+|+--.|+.+...+ |+|||+.++.++..... ..+. .+.+ .+|+|+
T Consensus 227 ----lysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws--------- 292 (315)
T KOG0279|consen 227 ----LYSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS--------- 292 (315)
T ss_pred ----eEeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEc---------
Confidence 22347889999999999998888888766 99999999988754322 1111 1233 355666
Q ss_pred CCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 667 KNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 667 ~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
+++..|++|-.|+-|.+|...
T Consensus 293 -------------~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 293 -------------ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -------------CCCcEEEeeecCCcEEEEEee
Confidence 568889999999999999753
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=9.9e-27 Score=239.62 Aligned_cols=200 Identities=18% Similarity=0.277 Sum_probs=175.5
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCee
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~ 110 (1108)
-||.+-|.|++++|...++|+|+.|++|+|||+.+... +.+.+|-..|..++||+-..||++++.|+.|+.||++.+++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 58999999999999999999999999999999976655 46777999999999999999999999999999999999998
Q ss_pred eeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 111 ~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
+..+ +|-+.|.|++..|.-..|++|+.|.+++|||+.+.... +.+.+|. .+|.+|.++|. +
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V-----~~l~GH~------------~~V~~V~~~~~-d 289 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV-----HVLSGHT------------NPVASVMCQPT-D 289 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE-----EEecCCC------------CcceeEEeecC-C
Confidence 8776 78899999999999999999999999999999863222 4477887 88999999986 5
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
+. +++|+.|++|++||+..++... ...| .+.|.++|-+ |+...++++
T Consensus 290 pq-vit~S~D~tvrlWDl~agkt~~tlt~h------------------------------kksvral~lh-P~e~~fASa 337 (460)
T KOG0285|consen 290 PQ-VITGSHDSTVRLWDLRAGKTMITLTHH------------------------------KKSVRALCLH-PKENLFASA 337 (460)
T ss_pred Cc-eEEecCCceEEEeeeccCceeEeeecc------------------------------cceeeEEecC-Cchhhhhcc
Confidence 65 9999999999999999997644 4444 7889999965 988888988
Q ss_pred EccCcEEEEecCCC
Q 001279 269 YIDGDILLWNTSTT 282 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1108)
+.|. |+.|++..+
T Consensus 338 s~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 338 SPDN-IKQWKLPEG 350 (460)
T ss_pred CCcc-ceeccCCcc
Confidence 8875 889988755
No 34
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-23 Score=234.26 Aligned_cols=521 Identities=13% Similarity=0.162 Sum_probs=308.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
=.|++|+||||+.+.+.||++-.||.|.||++... +..+..+....|..|+|++ +++|+|++.+|.|.-||+.+.+
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence 35899999999999999999999999999999543 4445555567999999995 4799999999999999999999
Q ss_pred eeeeec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 110 LACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 110 ~~~~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
....+. ..+.|.+++.+|.+..+++|++||.+ .+++...+.+. |+..-. +++ +.|.++.|+|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl--~~~s~~p~~I~---~~r~l~-rq~---------sRvLslsw~~-- 164 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVL--YDFSIGPDKIT---YKRSLM-RQK---------SRVLSLSWNP-- 164 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceE--EEEecCCceEE---EEeecc-ccc---------ceEEEEEecC--
Confidence 988885 45789999999999999999999955 44554445555 322110 111 6799999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
++.+++.|+.||.|++||+..+..+.+... ...+ +. ..+.--|.++.+. .+ ..|++|
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--~~d~--l~-----------------k~~~~iVWSv~~L-rd-~tI~sg 221 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITM--QLDR--LS-----------------KREPTIVWSVLFL-RD-STIASG 221 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeee--cccc--cc-----------------cCCceEEEEEEEe-ec-CcEEEe
Confidence 688899999999999999999866552211 0000 00 0013356777766 44 569999
Q ss_pred EccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEec
Q 001279 269 YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSL 348 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l 348 (1108)
.+.|+|.+||...+...+.... ....+.. ++...++..++++|-+. .++.+
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~---------------h~adVl~--------Lav~~~~d~vfsaGvd~------~ii~~ 272 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSC---------------HDADVLA--------LAVADNEDRVFSAGVDP------KIIQY 272 (691)
T ss_pred cCCceEEEEcccCcchhhhhhh---------------hhcceeE--------EEEcCCCCeEEEccCCC------ceEEE
Confidence 9999999999987754442110 0111111 22344444444444443 14443
Q ss_pred cccccccccceeeeeecCC-CCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCC
Q 001279 349 EWSSGMENLRCVSRVDITL-TGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP 427 (1108)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~-~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 427 (1108)
........ ++....... ...+..|+..+. .++....++.+++-........... .....|
T Consensus 273 ~~~~~~~~--wv~~~~r~~h~hdvrs~av~~~----------~l~sgG~d~~l~i~~s~~~~~~~h~-------~~~~~p 333 (691)
T KOG2048|consen 273 SLTTNKSE--WVINSRRDLHAHDVRSMAVIEN----------ALISGGRDFTLAICSSREFKNMDHR-------QKNLFP 333 (691)
T ss_pred EecCCccc--eeeeccccCCcccceeeeeecc----------eEEecceeeEEEEccccccCchhhh-------cccccc
Confidence 32221110 111111111 124444444443 2222233333332111110000000 000000
Q ss_pred ccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcE
Q 001279 428 GVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSV 507 (1108)
Q Consensus 428 ~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtV 507 (1108)
..-.....+.......-.... ...|. +.+. ..+++. .....--+.--....+++.+++|+|++|+.+.- ..+
T Consensus 334 ~~~~v~~a~~~~L~~~w~~h~---v~lwr-lGS~-~~~g~~--~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~ 405 (691)
T KOG2048|consen 334 ASDRVSVAPENRLLVLWKAHG---VDLWR-LGSV-ILQGEY--NYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRT 405 (691)
T ss_pred ccceeecCccceEEEEecccc---cccee-ccCc-cccccc--ChhhheeeecCCccceeeeccCCCCCEEEEeec-cce
Confidence 000000000000000000000 00000 0000 000000 000000011122345567799999999998753 246
Q ss_pred EEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEe-cCceEEEEEecCCCCCccccccccCccceee
Q 001279 508 RIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN-EFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1108)
Q Consensus 508 riWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~-~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1108)
+||.++.........++ .......+++.+.|+-|+..++..+ .+..+.++++...... +...
T Consensus 406 ~iy~L~~~~~vk~~~v~------~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k-----------el~~ 468 (691)
T KOG2048|consen 406 KIYRLQPDPNVKVINVD------DVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK-----------ELKS 468 (691)
T ss_pred EEEEeccCcceeEEEec------cchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh-----------hhhc
Confidence 77776643322111111 1122234688899999998888777 6788888887765321 1111
Q ss_pred cccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCcccc
Q 001279 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLA 666 (1108)
Q Consensus 587 ~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~ 666 (1108)
++ -+.-..+|+.|+.||+|++||+.+.+|.|.+|++++.+..+.. ......|+.+.|.+.
T Consensus 469 ~~----------~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~---~rln~~vTa~~~~~~------- 528 (691)
T KOG2048|consen 469 IQ----------SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK---VRLNIDVTAAAFSPF------- 528 (691)
T ss_pred cc----------cccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch---hccCcceeeeecccc-------
Confidence 11 1234578999999999999999999999999999998776322 245688999999954
Q ss_pred CCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 667 KNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 667 ~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
..+.|++++.|++|+-+|.+.
T Consensus 529 --------------~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 529 --------------VRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred --------------ccCcEEEEecCCeEEEEecch
Confidence 345699999999999999854
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.6e-25 Score=218.79 Aligned_cols=205 Identities=14% Similarity=0.212 Sum_probs=166.8
Q ss_pred eeeeCCCCCceEEEEcCC-CCEEEEEECCCcEEEEecCC---cceE--EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 001279 29 AVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDG---IEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~-~~~LA~Gs~dG~I~iw~~~~---~~~~--~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1108)
..+-||++.+-.+|++|- |.+||+|+.|..||||+... ..+. +--.|+..|+.++|+|.|++|+++|.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 345689999999999998 88999999999999999873 2222 22369999999999999999999999999999
Q ss_pred EEcCCCe--eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 103 WSLESRS--LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 103 Wd~~s~~--~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
|.=..++ ++..+ +|+.+|.|++|+++++|||+++.|.+|.||..+.+ ....-. --+..|. .-|
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded-dEfec~-aVL~~Ht------------qDV 153 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED-DEFECI-AVLQEHT------------QDV 153 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC-CcEEEE-eeecccc------------ccc
Confidence 9877664 44555 79999999999999999999999999999998843 222111 1245554 679
Q ss_pred EEEecccCCCCCEEEEEECCCeEEEEEcc-CC--e-EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEE
Q 001279 180 VGVLPHPNSSGNRVLIAYENALVILWDVS-EA--Q-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~lWdl~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1108)
-.+.|||+ ..+|++++.|.+|++|+-. .. . +..+.+| ...|.++
T Consensus 154 K~V~WHPt--~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~------------------------------~~TVW~~ 201 (312)
T KOG0645|consen 154 KHVIWHPT--EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH------------------------------ENTVWSL 201 (312)
T ss_pred cEEEEcCC--cceeEEeccCCeEEEEeecCCCCeeEEEEecCc------------------------------cceEEEE
Confidence 99999995 4469999999999999866 33 2 2344455 6789999
Q ss_pred EeecCCCCEEEEEEccCcEEEEecC
Q 001279 256 CWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 256 ~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
.|. +.|..|++++.|+++++|..-
T Consensus 202 ~F~-~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 202 AFD-NIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred Eec-CCCceEEEecCCcceEeeeec
Confidence 975 999999999999999999853
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3e-26 Score=240.08 Aligned_cols=200 Identities=15% Similarity=0.196 Sum_probs=165.8
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecC-Ccc---eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~-~~~---~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
..|...|=-+.||++|++||+|+.|.+..||... ... .....+|..+|..+.||||.++|++|+.|..+.+||+.+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 3567778889999999999999999999999873 222 336678999999999999999999999999999999999
Q ss_pred CeeeeeecCC--CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 108 RSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 108 ~~~~~~~~~~--~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
+.+.+.+.+. -.+++++|.|++..+++|+.|+++..|++|. .+. +...+-. ...|.+++..
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg---n~~---~~W~gvr-----------~~~v~dlait 363 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG---NIL---GNWEGVR-----------DPKVHDLAIT 363 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc---chh---hcccccc-----------cceeEEEEEc
Confidence 9999888655 6899999999999999999999999999984 332 1122211 1458899986
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE
Q 001279 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1108)
+ ||+.+++.+.|..|++++.++....... .++.+|++.+ .|.||+++
T Consensus 364 ~--Dgk~vl~v~~d~~i~l~~~e~~~dr~li------------------------------se~~~its~~-iS~d~k~~ 410 (519)
T KOG0293|consen 364 Y--DGKYVLLVTVDKKIRLYNREARVDRGLI------------------------------SEEQPITSFS-ISKDGKLA 410 (519)
T ss_pred C--CCcEEEEEecccceeeechhhhhhhccc------------------------------cccCceeEEE-EcCCCcEE
Confidence 6 8999999999999999998775433221 1267899999 56999999
Q ss_pred EEEEccCcEEEEecCC
Q 001279 266 AVGYIDGDILLWNTST 281 (1108)
Q Consensus 266 ~sg~~DG~I~lWd~~~ 281 (1108)
++.-.+..+++||+..
T Consensus 411 LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEE 426 (519)
T ss_pred EEEcccCeeEEeecch
Confidence 9999999999999974
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=2.6e-25 Score=281.54 Aligned_cols=321 Identities=14% Similarity=0.202 Sum_probs=229.0
Q ss_pred CCcEEEEecCCcceEE------eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC----e----eeeeecCCCCee
Q 001279 56 DGRIKVIGGDGIEGLL------ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR----S----LACCLKWESNIT 121 (1108)
Q Consensus 56 dG~I~iw~~~~~~~~~------~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~----~----~~~~~~~~~~It 121 (1108)
+|.+++|+........ +..|...|.+++|+|++.+|++++.|+.|+|||+.+. . ....+.+...|.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 6778888887554431 2348899999999999999999999999999998642 1 122334557899
Q ss_pred EEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC
Q 001279 122 AFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1108)
Q Consensus 122 sl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1108)
+++|++. +.++++++.||+|++|++.. ++... .+.+|. ..|+++.|+|. ++.+|++|+.||
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~---~~~~H~------------~~V~~l~~~p~-~~~~L~Sgs~Dg 598 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVT---EMKEHE------------KRVWSIDYSSA-DPTLLASGSDDG 598 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEE---EecCCC------------CCEEEEEEcCC-CCCEEEEEcCCC
Confidence 9999874 68999999999999999864 33332 255665 78999999985 577799999999
Q ss_pred eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 201 ~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
+|++||+.++..+....+ ...|.++.|.+++|.+|++|+.||.|++||+.
T Consensus 599 ~v~iWd~~~~~~~~~~~~------------------------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKT------------------------------KANICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred EEEEEECCCCcEEEEEec------------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 999999998876554433 45688999876789999999999999999986
Q ss_pred CCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccccccccccee
Q 001279 281 TTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1108)
Q Consensus 281 ~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~ 360 (1108)
+... ++..+ .+
T Consensus 649 ~~~~------------------------~~~~~-------------------~~-------------------------- 659 (793)
T PLN00181 649 NPKL------------------------PLCTM-------------------IG-------------------------- 659 (793)
T ss_pred CCCc------------------------cceEe-------------------cC--------------------------
Confidence 4310 00000 00
Q ss_pred eeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEE
Q 001279 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVA 440 (1108)
Q Consensus 361 ~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 440 (1108)
|...|+++
T Consensus 660 ------------------------------------------------------------------------h~~~V~~v 667 (793)
T PLN00181 660 ------------------------------------------------------------------------HSKTVSYV 667 (793)
T ss_pred ------------------------------------------------------------------------CCCCEEEE
Confidence 00011111
Q ss_pred EEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeE
Q 001279 441 EFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLI 520 (1108)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~ 520 (1108)
. +. ++..|+||+.|++|+|||+..+....
T Consensus 668 ~-------------------------------------------------f~-~~~~lvs~s~D~~ikiWd~~~~~~~~- 696 (793)
T PLN00181 668 R-------------------------------------------------FV-DSSTLVSSSTDNTLKLWDLSMSISGI- 696 (793)
T ss_pred E-------------------------------------------------Ee-CCCEEEEEECCCEEEEEeCCCCcccc-
Confidence 1 11 23378999999999999987432000
Q ss_pred eeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEe
Q 001279 521 CALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS 600 (1108)
Q Consensus 521 ~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 600 (1108)
..... ..+.+|...+.+++|++++++|++|+.||.|+||+...........+. . .. ...-....
T Consensus 697 ---~~~~l-~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~--~---------~~-~~~~~~~~ 760 (793)
T PLN00181 697 ---NETPL-HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK--T---------ID-PVSGLEVD 760 (793)
T ss_pred ---CCcce-EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc--c---------CC-cccccccC
Confidence 00000 236789999999999999999999999999999997643110000000 0 00 00001123
Q ss_pred ecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001279 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1108)
Q Consensus 601 ~h~~~Vtslafspdg~~LavGs~dG~V~vwd~ 632 (1108)
.|...|.+++|+|++..|++|+.||+|+|||+
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 46678999999999999999999999999996
No 38
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=6.8e-25 Score=248.73 Aligned_cols=466 Identities=12% Similarity=0.126 Sum_probs=315.2
Q ss_pred ceEEEEcCC--CCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 38 ASILAFDHI--QRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 38 is~la~sp~--~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
|+++. +|. -.-+.+|+.+|+++||++....++ ...++...|+++.=+|--..++.+..+|+|.++|+...+.+.++
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 55543 443 345789999999999999766555 66677889999999997778888999999999999999999999
Q ss_pred cCC-CCeeEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 115 KWE-SNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 115 ~~~-~~Itsl~~~~~~~-~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
.+. ++|++++|..||+ .|++|+..|.+.+||++. .++... ....|. +.|....|.| ....
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~--kkl~~v--~~nah~------------~sv~~~~fl~--~epV 302 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK--KKLINV--TRNAHY------------GSVTGATFLP--GEPV 302 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCC--Ceeeee--eecccc------------CCcccceecC--CCce
Confidence 886 9999999999885 788888899999999985 333321 122444 7788999977 3456
Q ss_pred EEEEECCCeEEEEEccCCeE----EE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE
Q 001279 193 VLIAYENALVILWDVSEAQI----IF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1108)
Q Consensus 193 ll~~~~dg~V~lWdl~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1108)
+++++.|..+++|=.+++.. +. ..|| ..+..|+.|....|.++.+
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH------------------------------s~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGH------------------------------SAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCC------------------------------CCCchheeeeccCcEEEEe
Confidence 89999999999887665432 22 2344 6778889988789999999
Q ss_pred EEccCcEEEEecCCCCCCCCccC-CCCCceeeeecc--cccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEE
Q 001279 268 GYIDGDILLWNTSTTASTKGQQT-GSRNNVVKLELS--SAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1108)
Q Consensus 268 g~~DG~I~lWd~~~~~~~~~~~~-~~~~~~~kl~~~--~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~lt 344 (1108)
++.|++++.+++......+.... .......++... ......|+..+...... .......+...-.+.
T Consensus 353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R---E~~W~Nv~~~h~~~~------- 422 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR---EKEWDNVITAHKGKR------- 422 (910)
T ss_pred cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch---hhhhcceeEEecCcc-------
Confidence 99999999988754432221000 000111111111 11112244444222211 222233333333222
Q ss_pred EEeccccccccccceeeeeecC------CCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCC
Q 001279 345 VLSLEWSSGMENLRCVSRVDIT------LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKK 418 (1108)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~------~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~ 418 (1108)
....|..... ..++..+. ....+..++.++-+ +..++.+++|.+-.|+..+....-...
T Consensus 423 ~~~tW~~~n~----~~G~~~L~~~~~~~~~~~~~av~vs~CG--------NF~~IG~S~G~Id~fNmQSGi~r~sf~--- 487 (910)
T KOG1539|consen 423 SAYTWNFRNK----TSGRHVLDPKRFKKDDINATAVCVSFCG--------NFVFIGYSKGTIDRFNMQSGIHRKSFG--- 487 (910)
T ss_pred eEEEEeccCc----ccccEEecCccccccCcceEEEEEeccC--------ceEEEeccCCeEEEEEcccCeeecccc---
Confidence 2233322110 01112222 22344454444432 245556777777777643321111110
Q ss_pred CCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEE
Q 001279 419 PSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVY 498 (1108)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~ll 498 (1108)
.-+.|..++ .-++...-++.+
T Consensus 488 ----------~~~ah~~~V-------------------------------------------------~gla~D~~n~~~ 508 (910)
T KOG1539|consen 488 ----------DSPAHKGEV-------------------------------------------------TGLAVDGTNRLL 508 (910)
T ss_pred ----------cCccccCce-------------------------------------------------eEEEecCCCceE
Confidence 001122222 222445556689
Q ss_pred EEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccc
Q 001279 499 LAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVL 578 (1108)
Q Consensus 499 atgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~ 578 (1108)
++++.||.+++||.....+... ..+ ..+++++..+.....|+.+..|-.|+++|..+..
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~---------l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k--------- 567 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKS---------LRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK--------- 567 (910)
T ss_pred EEccCcceEEEEecCCcceeee---------ecc---CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh---------
Confidence 9999999999999998875411 111 2478999999999999999999999999988752
Q ss_pred cCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeee
Q 001279 579 ETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 658 (1108)
Q Consensus 579 ~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~ 658 (1108)
.+..|.+|...|++++|||||++|++++.|++|++||+.++.++=.. ....+.+++.|+
T Consensus 568 ----------------vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~----~vd~~~~sls~S- 626 (910)
T KOG1539|consen 568 ----------------VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL----LVDSPCTSLSFS- 626 (910)
T ss_pred ----------------hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE----ecCCcceeeEEC-
Confidence 34567899999999999999999999999999999999999887222 257889999999
Q ss_pred cccCccccCCCCCCCCCCCCCCCccEEEEEcCC-ccEEEEeC
Q 001279 659 FKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD-AKISIVGG 699 (1108)
Q Consensus 659 ~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~D-g~v~v~d~ 699 (1108)
|.+++|++...| .-|++|--
T Consensus 627 ---------------------PngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 627 ---------------------PNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ---------------------CCCCEEEEEEecCceEEEEEc
Confidence 668999999999 67999964
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-24 Score=236.94 Aligned_cols=282 Identities=17% Similarity=0.297 Sum_probs=229.2
Q ss_pred CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC-CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCC
Q 001279 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1108)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~-~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~ 151 (1108)
..|...|+++.|+|-...++++-..|+|.|||.+++..+.++.- ..+|.+..|.+..+|+++|+.|+.|+|++|.+.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e- 88 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE- 88 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce-
Confidence 34788999999999999999999999999999999999998854 5689999999999999999999999999998642
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC-eE-EEEeCCCcccccccccC
Q 001279 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QI-IFVGGGKDLQLKDGVVD 229 (1108)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~-~~-~~~~~~~~~~~~~~~~~ 229 (1108)
-+. .+.+|. +.|.+++-||. .-.+++++.|-+|++||.+.. .+ ..+.||
T Consensus 89 -kV~---~FeAH~------------DyIR~iavHPt--~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH----------- 139 (794)
T KOG0276|consen 89 -KVK---TFEAHS------------DYIRSIAVHPT--LPYVLTSSDDMTIKLWDWENEWACEQTFEGH----------- 139 (794)
T ss_pred -eeE---Eeeccc------------cceeeeeecCC--CCeEEecCCccEEEEeeccCceeeeeEEcCc-----------
Confidence 222 277776 88999999996 345999999999999999987 33 456677
Q ss_pred CCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCcc
Q 001279 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 309 (1108)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~ 309 (1108)
..-|.++|+...|.+.+++++-|++|++|++.+.. +..
T Consensus 140 -------------------~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----------~nf------------ 177 (794)
T KOG0276|consen 140 -------------------EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----------PNF------------ 177 (794)
T ss_pred -------------------ceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----------Cce------------
Confidence 66788899886677899999999999999985320 000
Q ss_pred EEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcc
Q 001279 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKA 389 (1108)
Q Consensus 310 i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~ 389 (1108)
.+
T Consensus 178 --Tl---------------------------------------------------------------------------- 179 (794)
T KOG0276|consen 178 --TL---------------------------------------------------------------------------- 179 (794)
T ss_pred --ee----------------------------------------------------------------------------
Confidence 00
Q ss_pred eEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCC
Q 001279 390 DLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHT 469 (1108)
Q Consensus 390 ~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1108)
.-|+..|+|..++..
T Consensus 180 -----------------------------------------~gHekGVN~Vdyy~~------------------------ 194 (794)
T KOG0276|consen 180 -----------------------------------------EGHEKGVNCVDYYTG------------------------ 194 (794)
T ss_pred -----------------------------------------eccccCcceEEeccC------------------------
Confidence 003344555555421
Q ss_pred ccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCC
Q 001279 470 QAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1108)
Q Consensus 470 ~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~ 549 (1108)
.|..+++||++|.+|+|||.++..|. .++.||..-|.++.|+|.=.
T Consensus 195 -----------------------gdkpylIsgaDD~tiKvWDyQtk~CV-----------~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 195 -----------------------GDKPYLISGADDLTIKVWDYQTKSCV-----------QTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred -----------------------CCcceEEecCCCceEEEeecchHHHH-----------HHhhcccccceEEEecCCCc
Confidence 12238999999999999999999887 56899999999999999999
Q ss_pred eEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEE
Q 001279 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1108)
Q Consensus 550 ~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~ 628 (1108)
.+++|+.||+||||+-.+...+ .++..--+.|+|++-.+.++.+++|++.|.|.
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE-------------------------~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLE-------------------------KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EEEEecCCccEEEecCcceehh-------------------------hhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999999999999997775433 34455678899999999999999999999753
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-24 Score=247.22 Aligned_cols=313 Identities=14% Similarity=0.233 Sum_probs=239.2
Q ss_pred CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001279 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l 153 (1108)
....|+.|+|+|....++++-..|.|++||.+=+.++..+ .|.++|..++|+|..+++++|+.|-.|+||+|... ++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rc 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RC 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--ee
Confidence 4568999999999999999999999999999999999887 79999999999999999999999999999999863 33
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCC
Q 001279 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPS 232 (1108)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~ 232 (1108)
. |++.+|. +.|..+.||+ ..-.+++++.|-+|+|||..+.+++. ..||
T Consensus 86 l---ftL~GHl------------DYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltGH-------------- 134 (1202)
T KOG0292|consen 86 L---FTLLGHL------------DYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTGH-------------- 134 (1202)
T ss_pred h---hhhcccc------------ceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEecC--------------
Confidence 3 6688886 8899999998 56679999999999999999987755 5677
Q ss_pred CCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEE
Q 001279 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~ 312 (1108)
.--|.|+.|+ |....+++++-|.+|++||+.........+. +-.. ....
T Consensus 135 ----------------nHYVMcAqFh-ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~-------------~~~~ 183 (1202)
T KOG0292|consen 135 ----------------NHYVMCAQFH-PTEDLIVSASLDQTVRVWDISGLRKKNKAPG-SLED-------------QMRG 183 (1202)
T ss_pred ----------------ceEEEeeccC-CccceEEEecccceEEEEeecchhccCCCCC-Cchh-------------hhhc
Confidence 5567788876 9899999999999999999975421110000 0000 0000
Q ss_pred EEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEE
Q 001279 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1108)
Q Consensus 313 ~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~ 392 (1108)
. ..++. +.|+.|. ++
T Consensus 184 ~----------~~~~d--Lfg~~Da-------VV---------------------------------------------- 198 (1202)
T KOG0292|consen 184 Q----------QGNSD--LFGQTDA-------VV---------------------------------------------- 198 (1202)
T ss_pred c----------ccchh--hcCCcCe-------ee----------------------------------------------
Confidence 0 00000 0000000 00
Q ss_pred EEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccC
Q 001279 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1108)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1108)
++
T Consensus 199 ------------------------------------------------K~------------------------------ 200 (1202)
T KOG0292|consen 199 ------------------------------------------------KH------------------------------ 200 (1202)
T ss_pred ------------------------------------------------ee------------------------------
Confidence 00
Q ss_pred cccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEE
Q 001279 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1108)
Q Consensus 473 ~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~La 552 (1108)
+..||.--++-++|+|.-.+|++|++|..|++|.++...-= .+ -...+|...|+++-|+|...+++
T Consensus 201 -----VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW---Ev------DtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 201 -----VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW---EV------DTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred -----eecccccccceEEecCCcceEEecCCcceeeEEEeccccce---ee------hhhhcccCCcceEEecCccceeE
Confidence 11233333344578888889999999999999998744311 00 13679999999999999999999
Q ss_pred EEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001279 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1108)
Q Consensus 553 sg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~ 632 (1108)
+.+.|++++|||+...+ ++.+|+.-+..-+.++-+|..+++|.|-+.| +-|+-+
T Consensus 267 SnsEDksirVwDm~kRt-------------------------~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFkl 320 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKRT-------------------------SVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFKL 320 (1202)
T ss_pred ecCCCccEEEEeccccc-------------------------ceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEEE
Confidence 99999999999999873 5678888899999999999999999998888 566666
Q ss_pred cC
Q 001279 633 NL 634 (1108)
Q Consensus 633 ~~ 634 (1108)
+.
T Consensus 321 eR 322 (1202)
T KOG0292|consen 321 ER 322 (1202)
T ss_pred cc
Confidence 53
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=8.4e-27 Score=244.52 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=119.8
Q ss_pred cEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCcccc
Q 001279 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1108)
Q Consensus 496 ~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~ 575 (1108)
.+|++|+.|..|++||..++.|. .++.+|...|.++.|++++++|++++.|..++|||++.-..
T Consensus 235 gLiasgskDnlVKlWDprSg~cl-----------~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE----- 298 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCL-----------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE----- 298 (464)
T ss_pred ceeEEccCCceeEeecCCCcchh-----------hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH-----
Confidence 36777777777777777777655 45778899999999999999999999999999999984321
Q ss_pred ccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCC-CCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEE
Q 001279 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1108)
Q Consensus 576 ~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspd-g~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l 654 (1108)
+.++++|...|++++|+|- ..+|++|+.||.|..|.+.....+. ..-.+|...|.+|
T Consensus 299 --------------------l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~--~i~~AHd~~iwsl 356 (464)
T KOG0284|consen 299 --------------------LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG--EIPPAHDGEIWSL 356 (464)
T ss_pred --------------------HHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc--CCCcccccceeee
Confidence 4567899999999999994 4789999999999999998444442 1235799999999
Q ss_pred EeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 655 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 655 ~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
+|.|. +.+|++|++|.++++|...
T Consensus 357 ~~hPl----------------------Ghil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 357 AYHPL----------------------GHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ecccc----------------------ceeEeecCCCcceeeeccC
Confidence 99954 8889999999999999854
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.5e-24 Score=274.52 Aligned_cols=198 Identities=17% Similarity=0.267 Sum_probs=160.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc--------ceEEeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEE
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVW 103 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vW 103 (1108)
+|...|++++|+|++.+||+|+.||.|+||+.... .......+...|.+++|++ ++.+|++++.|++|++|
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 47888999999999999999999999999997431 1122233456899999987 46899999999999999
Q ss_pred EcCCCeeeeee-cCCCCeeEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001279 104 SLESRSLACCL-KWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 104 d~~s~~~~~~~-~~~~~Itsl~~~~-~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
|+.+++.+..+ .|.+.|++++|+| ++.+|++|+.||.|++|++.. +.... .+..+ ..|.+
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~~~---~~~~~-------------~~v~~ 622 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ--GVSIG---TIKTK-------------ANICC 622 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC--CcEEE---EEecC-------------CCeEE
Confidence 99998887766 6889999999997 678999999999999999864 23322 12221 45899
Q ss_pred EecccCCCCCEEEEEECCCeEEEEEccCCeE--EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeec
Q 001279 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1108)
+.|++. ++..|++|+.||.|++||+...+. ....+| ...|+++.|.
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h------------------------------~~~V~~v~f~- 670 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH------------------------------SKTVSYVRFV- 670 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCC------------------------------CCCEEEEEEe-
Confidence 999664 688899999999999999987642 334455 7789999984
Q ss_pred CCCCEEEEEEccCcEEEEecCC
Q 001279 260 SSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
++..|++++.||+|++||+..
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCC
Confidence 688999999999999999863
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=6.1e-25 Score=222.53 Aligned_cols=202 Identities=13% Similarity=0.202 Sum_probs=168.0
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc--eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~ 106 (1108)
-...||++.|..+.|+|+|.++|+|+.|..|.||+..+.+ .-...+|.++|..|.|..|+..|+|++.|.+|++||++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 4567999999999999999999999999999999974433 34667999999999999999999999999999999999
Q ss_pred CCeeeeee-cCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 107 SRSLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 107 s~~~~~~~-~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
+++....+ .|..-|.++....-+ .++.+|+.||++++||.... ...++ ++.. -.++++.|
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k--~~~~t---~~~k-------------yqltAv~f 182 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK--EAIKT---FENK-------------YQLTAVGF 182 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc--chhhc---cccc-------------eeEEEEEe
Confidence 99999888 566778888755545 46668889999999998742 22211 2111 35899999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1108)
.+.+..+.+|.-|+.|++||++.+.... ..|| ...|+.+. .+++|.
T Consensus 183 --~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh------------------------------~DtIt~ls-ls~~gs 229 (338)
T KOG0265|consen 183 --KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH------------------------------ADTITGLS-LSRYGS 229 (338)
T ss_pred --cccccceeeccccCceeeeccccCcceEEeecc------------------------------cCceeeEE-eccCCC
Confidence 5577789999999999999998887754 5677 77889998 569999
Q ss_pred EEEEEEccCcEEEEecCC
Q 001279 264 ILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~ 281 (1108)
++.+-+.|.++++||+..
T Consensus 230 ~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ccccccccceEEEEEecc
Confidence 999999999999999863
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=230.54 Aligned_cols=309 Identities=13% Similarity=0.186 Sum_probs=228.9
Q ss_pred CCEEEEEECCCcEEE---EecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeE
Q 001279 47 QRLLAIATLDGRIKV---IGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITA 122 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~i---w~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Its 122 (1108)
+.-|+-|.--|.++. |--..-+...+.+|..+|+.+-|.|+-..+++++.|.+|++||..++++...+ +|...+..
T Consensus 76 ~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~d 155 (406)
T KOG0295|consen 76 GDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFD 155 (406)
T ss_pred ccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeE
Confidence 334444443344433 33333444456668999999999999888899999999999999999998877 78888999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeE
Q 001279 123 FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALV 202 (1108)
Q Consensus 123 l~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V 202 (1108)
++|+..++++++++.|-.+++|+++....++. ...+|+ ..|.++.|-|. |.++++++.|.+|
T Consensus 156 i~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k----s~~gh~------------h~vS~V~f~P~--gd~ilS~srD~ti 217 (406)
T KOG0295|consen 156 ISFDASGKYLATCSSDLSAKLWDFDTFFRCIK----SLIGHE------------HGVSSVFFLPL--GDHILSCSRDNTI 217 (406)
T ss_pred EEEecCccEEEecCCccchhheeHHHHHHHHH----HhcCcc------------cceeeEEEEec--CCeeeecccccce
Confidence 99999999999999999999999985211111 123333 45777777663 4556666666666
Q ss_pred EEEEccCCeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 203 ILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 203 ~lWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
+.|+++++-++..+ +| ..-|..+.
T Consensus 218 k~We~~tg~cv~t~~~h------------------------------~ewvr~v~------------------------- 242 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGH------------------------------SEWVRMVR------------------------- 242 (406)
T ss_pred eEEecccceeEEeccCc------------------------------hHhEEEEE-------------------------
Confidence 66666666544332 22 11111122
Q ss_pred CCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceee
Q 001279 282 TASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVS 361 (1108)
Q Consensus 282 ~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~ 361 (1108)
T Consensus 243 -------------------------------------------------------------------------------- 242 (406)
T KOG0295|consen 243 -------------------------------------------------------------------------------- 242 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEE
Q 001279 362 RVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAE 441 (1108)
Q Consensus 362 ~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~ 441 (1108)
T Consensus 243 -------------------------------------------------------------------------------- 242 (406)
T KOG0295|consen 243 -------------------------------------------------------------------------------- 242 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEe
Q 001279 442 FMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLIC 521 (1108)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~ 521 (1108)
.+.||.++++++.|.+|++|-+.+..+.
T Consensus 243 -------------------------------------------------v~~DGti~As~s~dqtl~vW~~~t~~~k--- 270 (406)
T KOG0295|consen 243 -------------------------------------------------VNQDGTIIASCSNDQTLRVWVVATKQCK--- 270 (406)
T ss_pred -------------------------------------------------ecCCeeEEEecCCCceEEEEEeccchhh---
Confidence 2233446666666666666666666544
Q ss_pred eeccccceeeccCCCCCeEEEEEEeC---------------CCeEEEEecCceEEEEEecCCCCCccccccccCccceee
Q 001279 522 ALDAEVQGIEVAGSRAPVSTLSFCFI---------------NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1108)
Q Consensus 522 ~l~~~~~~~~l~~h~~~Vt~lafs~d---------------~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1108)
..+.+|..+|-|++|.|. +.+|++++.|++|++|+++..
T Consensus 271 --------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg------------------ 324 (406)
T KOG0295|consen 271 --------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG------------------ 324 (406)
T ss_pred --------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC------------------
Confidence 345566666666666542 358999999999999999986
Q ss_pred cccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCcccc
Q 001279 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLA 666 (1108)
Q Consensus 587 ~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~ 666 (1108)
.|+.++.+|..-|..++|+|-|+||+++.+|+++++||+.+.++. ..+..|..-|+++.|..
T Consensus 325 -------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm---k~~~ah~hfvt~lDfh~-------- 386 (406)
T KOG0295|consen 325 -------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM---KTLEAHEHFVTSLDFHK-------- 386 (406)
T ss_pred -------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee---eccCCCcceeEEEecCC--------
Confidence 589999999999999999999999999999999999999999888 46677999999999993
Q ss_pred CCCCCCCCCCCCCCCccEEEEEcCCccEEEEe
Q 001279 667 KNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1108)
Q Consensus 667 ~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d 698 (1108)
+..++++|+-|-++.||.
T Consensus 387 --------------~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 --------------TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --------------CCceEEeccccceeeeee
Confidence 355899999999999996
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=216.21 Aligned_cols=293 Identities=15% Similarity=0.235 Sum_probs=223.5
Q ss_pred EEeCCCCCCEEEEEEeeC-CCEEEEEeCCCcEEEEEcCCC---eeeeee--cCCCCeeEEEEecCCCEEEEEeCCCcEEE
Q 001279 70 LLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLESR---SLACCL--KWESNITAFSVISGSHFMYIGDENGLMSV 143 (1108)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWd~~s~---~~~~~~--~~~~~Itsl~~~~~~~~l~vg~~dg~V~v 143 (1108)
..+.+|.+.|..++|+|. |..|+|++.|+.|++|+..++ .+.+.+ .|+..|.+++|+|.+++|++|+-|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 456789999999999998 778999999999999999853 233333 68889999999999999999999999999
Q ss_pred EEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe---EEE-EeCCC
Q 001279 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---IIF-VGGGK 219 (1108)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~---~~~-~~~~~ 219 (1108)
|.-...+-... -.+.+|+ ..|-|++|++ +|.+|+++++|..|-||.+.++. +.. +.+|
T Consensus 88 w~k~~~efecv---~~lEGHE------------nEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H- 149 (312)
T KOG0645|consen 88 WKKEDGEFECV---ATLEGHE------------NEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH- 149 (312)
T ss_pred eecCCCceeEE---eeeeccc------------cceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-
Confidence 98554333343 3478887 8899999977 79999999999999999988653 222 2333
Q ss_pred cccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeee
Q 001279 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKL 299 (1108)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl 299 (1108)
...|.-+.|+ |....|++++.|.+|++|+-..+.
T Consensus 150 -----------------------------tqDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dd---------------- 183 (312)
T KOG0645|consen 150 -----------------------------TQDVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDD---------------- 183 (312)
T ss_pred -----------------------------cccccEEEEc-CCcceeEEeccCCeEEEEeecCCC----------------
Confidence 7789999998 989999999999999999865210
Q ss_pred ecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecC
Q 001279 300 ELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSS 379 (1108)
Q Consensus 300 ~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~ 379 (1108)
.|.+.. .+
T Consensus 184 --------------dW~c~~-------------------------tl--------------------------------- 191 (312)
T KOG0645|consen 184 --------------DWECVQ-------------------------TL--------------------------------- 191 (312)
T ss_pred --------------CeeEEE-------------------------Ee---------------------------------
Confidence 111100 00
Q ss_pred CCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHH
Q 001279 380 AGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIA 459 (1108)
Q Consensus 380 ~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~ 459 (1108)
T Consensus 192 -------------------------------------------------------------------------------- 191 (312)
T KOG0645|consen 192 -------------------------------------------------------------------------------- 191 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCe
Q 001279 460 TFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPV 539 (1108)
Q Consensus 460 ~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~V 539 (1108)
+|+...+.+++|.+.|..++++++|++|+||-.-+.. -.-|+.++
T Consensus 192 --------------------~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------------~~~~sr~~ 236 (312)
T KOG0645|consen 192 --------------------DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------------SGMHSRAL 236 (312)
T ss_pred --------------------cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---------------chhcccce
Confidence 0011111223577778899999999999999865333 22567789
Q ss_pred EEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCC-CCEE
Q 001279 540 STLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKL 618 (1108)
Q Consensus 540 t~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspd-g~~L 618 (1108)
..++|. +..|++++.|+.++||.-+..+.+.+...+ ...-..|...|.+++|.|. ..+|
T Consensus 237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~------------------~~~~~aHe~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL------------------AKKEGAHEVDVNSVQWNPKVSNRL 296 (312)
T ss_pred Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH------------------HhhhcccccccceEEEcCCCCCce
Confidence 999999 679999999999999998865443221110 1123468889999999994 6799
Q ss_pred EEEeCCCeEEEEEcc
Q 001279 619 AVGFECGRVAVLDMN 633 (1108)
Q Consensus 619 avGs~dG~V~vwd~~ 633 (1108)
++|++||.|++|.+.
T Consensus 297 ~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 297 ASGGDDGIVNFWELE 311 (312)
T ss_pred eecCCCceEEEEEec
Confidence 999999999999874
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6.8e-25 Score=258.12 Aligned_cols=200 Identities=18% Similarity=0.367 Sum_probs=171.0
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc---eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc-CCCee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL-ESRSL 110 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~---~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~-~s~~~ 110 (1108)
...|+|+.|+|+|+++|.++.|+.|++|+..... .....+|...|..++|+|++.+|++++.|++|+|||+ ..+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 7889999999999999999999999999995544 2344689999999999999999999999999999999 44466
Q ss_pred eeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 111 ~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
+..+ .|...|++++|+|+++++++|+.|++|+||++.. +++... +.+|. +.|++++|+| +
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~~~---l~~hs------------~~is~~~f~~--d 299 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--GECVRK---LKGHS------------DGISGLAFSP--D 299 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--CeEEEe---eeccC------------CceEEEEECC--C
Confidence 6666 8999999999999999999999999999999886 566544 77777 8899999987 7
Q ss_pred CCEEEEEECCCeEEEEEccCCeEE--E-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQII--F-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1108)
+..|++++.|+.|+|||+.++... . ..++ .... .+++++| +|+|.+|+
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~-~~~~~~f-sp~~~~ll 350 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGA---------------------------ENSA-PVTSVQF-SPNGKYLL 350 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCC---------------------------CCCC-ceeEEEE-CCCCcEEE
Confidence 888999999999999999999843 2 2222 0002 6888886 59999999
Q ss_pred EEEccCcEEEEecCCC
Q 001279 267 VGYIDGDILLWNTSTT 282 (1108)
Q Consensus 267 sg~~DG~I~lWd~~~~ 282 (1108)
+++.|+.+++||+..+
T Consensus 351 ~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 351 SASLDRTLKLWDLRSG 366 (456)
T ss_pred EecCCCeEEEEEccCC
Confidence 9999999999999754
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=6.1e-25 Score=226.51 Aligned_cols=288 Identities=14% Similarity=0.225 Sum_probs=224.9
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~ 149 (1108)
.+.+|.++|+++++.|...++++++.|++|+|||+.++++..++ +|-..|..++|++...||+++++|+.|+.||++.
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~- 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY- 224 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh-
Confidence 45569999999999999899999999999999999999998887 5899999999999999999999999999999875
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCCccccccccc
Q 001279 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVV 228 (1108)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~ 228 (1108)
.++++. ..+|- ..|.|+..||. -.+|++|+.|.+++|||+++... ..+.||
T Consensus 225 -nkvIR~---YhGHl------------S~V~~L~lhPT--ldvl~t~grDst~RvWDiRtr~~V~~l~GH---------- 276 (460)
T KOG0285|consen 225 -NKVIRH---YHGHL------------SGVYCLDLHPT--LDVLVTGGRDSTIRVWDIRTRASVHVLSGH---------- 276 (460)
T ss_pred -hhhHHH---hcccc------------ceeEEEecccc--ceeEEecCCcceEEEeeecccceEEEecCC----------
Confidence 344432 33443 78999999996 44599999999999999999855 456677
Q ss_pred CCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCc
Q 001279 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRL 308 (1108)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~ 308 (1108)
..+|+++.+. |-...+++|+.|++|++||+..+...
T Consensus 277 --------------------~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agkt~----------------------- 312 (460)
T KOG0285|consen 277 --------------------TNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGKTM----------------------- 312 (460)
T ss_pred --------------------CCcceeEEee-cCCCceEEecCCceEEEeeeccCcee-----------------------
Confidence 7889998865 55667999999999999999654100
Q ss_pred cEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCc
Q 001279 309 PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHK 388 (1108)
Q Consensus 309 ~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~ 388 (1108)
++...-. -.+
T Consensus 313 ----------------------~tlt~hk-------------------------------ksv----------------- 322 (460)
T KOG0285|consen 313 ----------------------ITLTHHK-------------------------------KSV----------------- 322 (460)
T ss_pred ----------------------Eeeeccc-------------------------------cee-----------------
Confidence 0000000 000
Q ss_pred ceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCC
Q 001279 389 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSH 468 (1108)
Q Consensus 389 ~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1108)
T Consensus 323 -------------------------------------------------------------------------------- 322 (460)
T KOG0285|consen 323 -------------------------------------------------------------------------------- 322 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC
Q 001279 469 TQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN 548 (1108)
Q Consensus 469 ~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~ 548 (1108)
-+++.+|....+|+++.|. |+-|++..+.+. ..+.+|+.-|.+|+...|+
T Consensus 323 ------------------ral~lhP~e~~fASas~dn-ik~w~~p~g~f~-----------~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 323 ------------------RALCLHPKENLFASASPDN-IKQWKLPEGEFL-----------QNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred ------------------eEEecCCchhhhhccCCcc-ceeccCCccchh-----------hccccccceeeeeeeccCc
Confidence 0113445555788888775 899999888755 3578999999999998776
Q ss_pred CeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEE-----eecCcCEEEEEEcCCCCEEEEEeC
Q 001279 549 SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-----SLVNSPVRALQFTSSGAKLAVGFE 623 (1108)
Q Consensus 549 ~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~h~~~Vtslafspdg~~LavGs~ 623 (1108)
++++|++.|.+..|++....+- |-..+. ......|.+.+|...|..|++|..
T Consensus 373 -v~~~G~dng~~~fwdwksg~ny----------------------Q~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea 429 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKSGHNY----------------------QRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA 429 (460)
T ss_pred -eEEEcCCceEEEEEecCcCccc----------------------ccccccccCCccccccceeEEeecccCceEEeccC
Confidence 7788999999999999886331 111111 123467999999999999999999
Q ss_pred CCeEEEEEccC
Q 001279 624 CGRVAVLDMNL 634 (1108)
Q Consensus 624 dG~V~vwd~~~ 634 (1108)
|.+|++|.-..
T Consensus 430 dKtIk~~keDe 440 (460)
T KOG0285|consen 430 DKTIKMYKEDE 440 (460)
T ss_pred CcceEEEeccc
Confidence 99999997643
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=4.7e-24 Score=235.82 Aligned_cols=283 Identities=19% Similarity=0.322 Sum_probs=220.6
Q ss_pred eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001279 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1108)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~ 150 (1108)
+.+|..+|++++|+|++.+|++++.++.|.+||+.+++....+ .+...+.++.|.++++++++++.+|.|++|++...
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~- 83 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG- 83 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-
Confidence 3479999999999999999999999999999999988766555 56778899999999999999999999999998752
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe-CCCcccccccccC
Q 001279 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVD 229 (1108)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~-~~~~~~~~~~~~~ 229 (1108)
... ..+..+. ..|.++.|+| ++..+++++.+|.|.+||+.+++..... .|
T Consensus 84 -~~~---~~~~~~~------------~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------- 134 (289)
T cd00200 84 -ECV---RTLTGHT------------SYVSSVAFSP--DGRILSSSSRDKTIKVWDVETGKCLTTLRGH----------- 134 (289)
T ss_pred -cce---EEEeccC------------CcEEEEEEcC--CCCEEEEecCCCeEEEEECCCcEEEEEeccC-----------
Confidence 222 2233443 5799999988 4665666666999999999977665433 23
Q ss_pred CCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCcc
Q 001279 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 309 (1108)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~ 309 (1108)
...|++++|. |++.++++++.||.|++||+.+.....
T Consensus 135 -------------------~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~----------------------- 171 (289)
T cd00200 135 -------------------TDWVNSVAFS-PDGTFVASSSQDGTIKLWDLRTGKCVA----------------------- 171 (289)
T ss_pred -------------------CCcEEEEEEc-CcCCEEEEEcCCCcEEEEEccccccce-----------------------
Confidence 6689999986 889999988889999999986331000
Q ss_pred EEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcc
Q 001279 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKA 389 (1108)
Q Consensus 310 i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~ 389 (1108)
.+ . .
T Consensus 172 --~~---------------------------------~-------------------~---------------------- 175 (289)
T cd00200 172 --TL---------------------------------T-------------------G---------------------- 175 (289)
T ss_pred --eE---------------------------------e-------------------c----------------------
Confidence 00 0 0
Q ss_pred eEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCC
Q 001279 390 DLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHT 469 (1108)
Q Consensus 390 ~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1108)
+..
T Consensus 176 -------------------------------------------~~~---------------------------------- 178 (289)
T cd00200 176 -------------------------------------------HTG---------------------------------- 178 (289)
T ss_pred -------------------------------------------Ccc----------------------------------
Confidence 000
Q ss_pred ccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCC
Q 001279 470 QAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1108)
Q Consensus 470 ~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~ 549 (1108)
.+..+.++++++.+++++.||.|++||+..+... ..+..|...|.+++|++++.
T Consensus 179 ---------------~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 179 ---------------EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL-----------GTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred ---------------ccceEEECCCcCEEEEecCCCcEEEEECCCCcee-----------cchhhcCCceEEEEEcCCCc
Confidence 0011134556667888888999999999876543 23447778999999999988
Q ss_pred eEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q 001279 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1108)
Q Consensus 550 ~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~v 629 (1108)
++++++.+|.|++|++... .+...+..|...|++++|+|++++|++++.||.|++
T Consensus 233 ~~~~~~~~~~i~i~~~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTG-------------------------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred EEEEEcCCCcEEEEEcCCc-------------------------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 8988888999999998764 234556688899999999999999999999999999
Q ss_pred EE
Q 001279 630 LD 631 (1108)
Q Consensus 630 wd 631 (1108)
|+
T Consensus 288 w~ 289 (289)
T cd00200 288 WD 289 (289)
T ss_pred cC
Confidence 96
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=1.6e-24 Score=219.50 Aligned_cols=284 Identities=16% Similarity=0.254 Sum_probs=221.1
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|++.|..+.|+|++.++++|+.|..|.+|+...+.... ..+.+|. ++|+.+.|.+ ++..++
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~----~~lkgHs------------gAVM~l~~~~--d~s~i~ 106 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF----WVLKGHS------------GAVMELHGMR--DGSHIL 106 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce----eeecccc------------ceeEeeeecc--CCCEEE
Confidence 688999999999999999999999999999965432222 2356776 8999999966 899999
Q ss_pred EEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC-CEEEEEEccC
Q 001279 195 IAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDG 272 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~DG 272 (1108)
+++.|.+|+.||+++++.+. +.+| .+-|.+++ .+..| ..+.+|+.||
T Consensus 107 S~gtDk~v~~wD~~tG~~~rk~k~h------------------------------~~~vNs~~-p~rrg~~lv~SgsdD~ 155 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIRKHKGH------------------------------TSFVNSLD-PSRRGPQLVCSGSDDG 155 (338)
T ss_pred EecCCceEEEEecccceeeehhccc------------------------------cceeeecC-ccccCCeEEEecCCCc
Confidence 99999999999999998754 5555 44455555 33334 4677888999
Q ss_pred cEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccc
Q 001279 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1108)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1108)
++++||+......+.. . .+.++.
T Consensus 156 t~kl~D~R~k~~~~t~-----------~-----~kyqlt----------------------------------------- 178 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKTF-----------E-----NKYQLT----------------------------------------- 178 (338)
T ss_pred eEEEEeecccchhhcc-----------c-----cceeEE-----------------------------------------
Confidence 9999999754221100 0 000000
Q ss_pred cccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccC
Q 001279 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1108)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1108)
T Consensus 179 -------------------------------------------------------------------------------- 178 (338)
T KOG0265|consen 179 -------------------------------------------------------------------------------- 178 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeC
Q 001279 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1108)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~ 512 (1108)
.+++...+..+++|+-|+.|++||+
T Consensus 179 -------------------------------------------------------Av~f~d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 179 -------------------------------------------------------AVGFKDTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred -------------------------------------------------------EEEecccccceeeccccCceeeecc
Confidence 0012223336788999999999999
Q ss_pred CCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCc
Q 001279 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1108)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 592 (1108)
..+... ..+.+|..+|+.|..+++|.++.+-+.|.++++|++... -++
T Consensus 204 r~~d~~-----------~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~---------------------~p~ 251 (338)
T KOG0265|consen 204 RKNDGL-----------YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF---------------------APS 251 (338)
T ss_pred ccCcce-----------EEeecccCceeeEEeccCCCccccccccceEEEEEeccc---------------------CCC
Confidence 877655 357899999999999999999999999999999999875 223
Q ss_pred ceEEEEEeecCc----CEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCC
Q 001279 593 SLCRAVFSLVNS----PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKN 668 (1108)
Q Consensus 593 ~~~~~~~~~h~~----~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~ 668 (1108)
..|+..+.+|.. ....++|||++..+..|+.|..|++||.....++| .++||.+.|..++|.
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly---klpGh~gsvn~~~Fh----------- 317 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY---KLPGHYGSVNEVDFH----------- 317 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE---EcCCcceeEEEeeec-----------
Confidence 357777777533 34567899999999999999999999999988886 568999999999999
Q ss_pred CCCCCCCCCCCCCccEEEEEcCCccEEE
Q 001279 669 PNHSEREVPVNPAEEVIIVLFKDAKISI 696 (1108)
Q Consensus 669 p~~~~~~~~~~p~~~~L~s~s~Dg~v~v 696 (1108)
|...+|.+++.|.+|++
T Consensus 318 -----------p~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 318 -----------PTEPIILSCSSDKTIYL 334 (338)
T ss_pred -----------CCCcEEEEeccCceeEe
Confidence 55889999999999876
No 50
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=9.2e-23 Score=227.24 Aligned_cols=597 Identities=14% Similarity=0.147 Sum_probs=361.3
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc-ceEEeCCCCCCEEEEEEeeCCC---EEEEEeCCCcEEEEEcC
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQG---FLISITNDNEIQVWSLE 106 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~---~L~S~s~d~~I~vWd~~ 106 (1108)
+-|........++.| +..+|.|. ...|.+||-... ....+.+|.++|+|++|.|... +++|++.|+.|++|.++
T Consensus 10 ~Vgc~R~~~v~sw~~-~~~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~ 87 (764)
T KOG1063|consen 10 SVGCNRVPKVSSWGP-GGLVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLR 87 (764)
T ss_pred eeccccccccccccc-cceEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEe
Confidence 344444444444533 45666775 477999998665 5568889999999999999876 89999999999999999
Q ss_pred CCeeeeeecCC-CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 107 SRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 107 s~~~~~~~~~~-~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
.....+.+..+ ..+.++++......+.+...|+.+++|+...++--+.. ..++.... --..|+++.
T Consensus 88 ~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~-~~rf~~k~------------~ipLcL~~~ 154 (764)
T KOG1063|consen 88 DEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLA-VLRFEIKE------------AIPLCLAAL 154 (764)
T ss_pred ehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeeh-heehhhhh------------HhhHHHhhh
Confidence 66555554333 35666777666666666679999999998432211111 12222110 224566666
Q ss_pred cCCCCC-EEEEEECCCeEEEEEccCC---eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC
Q 001279 186 PNSSGN-RVLIAYENALVILWDVSEA---QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1108)
Q Consensus 186 P~~~~~-~ll~~~~dg~V~lWdl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1108)
|. .+. .+++|+.+..|.++.-..+ ++..+.|| ...|.++.|.-+.
T Consensus 155 ~~-~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH------------------------------~DWIrsl~f~~~~ 203 (764)
T KOG1063|consen 155 KN-NKTFLLACGGSKFVVDLYSSSADSFARVAELEGH------------------------------TDWIRSLAFARLG 203 (764)
T ss_pred cc-CCcEEEEecCcceEEEEeccCCcceeEEEEeecc------------------------------chhhhhhhhhccC
Confidence 63 343 3556777788888876654 34567788 5566667765333
Q ss_pred C--CEEEEEEccCcEEEEecCCCCCCCC------ccCCCCCceeee----e------cccccCCccEEEEEeeccccccc
Q 001279 262 G--SILAVGYIDGDILLWNTSTTASTKG------QQTGSRNNVVKL----E------LSSAERRLPVIVLHWSTNKESRS 323 (1108)
Q Consensus 262 g--~~l~sg~~DG~I~lWd~~~~~~~~~------~~~~~~~~~~kl----~------~~~~~~~~~i~~~~~~~~~s~~~ 323 (1108)
+ -+|++++.|..|++|++.-...... ....++.+.... . ..-..+..=+..++|+.
T Consensus 204 ~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p------ 277 (764)
T KOG1063|consen 204 GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP------ 277 (764)
T ss_pred CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc------
Confidence 3 4789999999999999864432211 111111111110 0 00001112233444433
Q ss_pred CCCceEEEEeCCCCCCcceEEEEeccccccccccc-eeeeeec--CCCCccceEEEecCCCCCCCCCcceEEEEcCCCeE
Q 001279 324 NIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLR-CVSRVDI--TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQL 400 (1108)
Q Consensus 324 ~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~-~~~~~~l--~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l 400 (1108)
.+..|++++.|. .+.+|.......+. +..++.- +..+.+++..+.|++. .++.-...|.+
T Consensus 278 --~~~~LLSASaDk-------smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~--------~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 278 --EGLDLLSASADK-------SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN--------VIIAHGRTGGF 340 (764)
T ss_pred --chhhheecccCc-------ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC--------EEEEecccCcE
Confidence 344556666665 55666554332221 1112111 1233577777877732 34444666777
Q ss_pred EEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccc---c
Q 001279 401 HFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKW---P 477 (1108)
Q Consensus 401 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w---p 477 (1108)
+.|.... +..| |
T Consensus 341 hlWkt~d-----------------------------------------------------------------~~~w~~~~ 355 (764)
T KOG1063|consen 341 HLWKTKD-----------------------------------------------------------------KTFWTQEP 355 (764)
T ss_pred EEEeccC-----------------------------------------------------------------ccceeecc
Confidence 7765211 1112 4
Q ss_pred ccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC
Q 001279 478 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 557 (1108)
Q Consensus 478 ~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d 557 (1108)
..+||...+.-++..|.|++|+|.+.|-|-|++-.-+.... .. ++. ...-|...++|++|-+....+++|...
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-wH----Eia--RPQiHGyDl~c~~~vn~~~~FVSgAdE 428 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-WH----EIA--RPQIHGYDLTCLSFVNEDLQFVSGADE 428 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccc-ee----eec--ccccccccceeeehccCCceeeecccc
Confidence 55666666666789999999999999999999865422211 11 111 123466689999999877778888889
Q ss_pred ceEEEEEecCCC-----------CCc----------------cccccc-c--Cccc---------------eeecccCC-
Q 001279 558 GLVYIYNLNGSL-----------DAK----------------NFLFVL-E--TKSE---------------VHALPEGK- 591 (1108)
Q Consensus 558 G~V~lw~l~~~~-----------~~~----------------~~~~~~-~--~~~~---------------~~~~~~~~- 591 (1108)
..+|+|+....- +.. +..+.+ + +.++ ...-+..+
T Consensus 429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence 999999875430 000 011111 0 0000 00000000
Q ss_pred -----cceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCC-----eEEEEEccCceEEEEeecCCCCCCceEEEEeeeccc
Q 001279 592 -----ISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG-----RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKN 661 (1108)
Q Consensus 592 -----g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG-----~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~ 661 (1108)
-+.-+..+.+|.-.|.+++.+|+++++|++.... -|++|+..+-..+ ..+.+|+-.|+.|+|+
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---~~L~~HsLTVT~l~FS---- 581 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---QELEGHSLTVTRLAFS---- 581 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---heecccceEEEEEEEC----
Confidence 0111234568999999999999999999998654 5899999987766 3577899999999999
Q ss_pred CccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCCccccccchh
Q 001279 662 THSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIAEPVCGFPIEKQAEQSA 741 (1108)
Q Consensus 662 ~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1108)
|++.+|++.+.|.++.+|....+.......-..+ +=.-.+||.+
T Consensus 582 ------------------pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k----~HtRIIWdcs-------------- 625 (764)
T KOG1063|consen 582 ------------------PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK----AHTRIIWDCS-------------- 625 (764)
T ss_pred ------------------CCCcEEEEeecCceEEeeeeecccchhhhhcccc----ccceEEEEcc--------------
Confidence 7799999999999999998632221110000011 1112234333
Q ss_pred hhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC-eeEEEecccccccccceeee-ecCC-Ccc-
Q 001279 742 EENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQK-VKHK-NRC- 817 (1108)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~-~~~v~sl~~~~~g~~~~~~k-~~~~-~~~- 817 (1108)
|.+. +.++++||.| .|+||.++..- -+.+.+ ..+. ..|
T Consensus 626 ---------------------------------W~pd--e~~FaTaSRDK~VkVW~~~~~~---d~~i~~~a~~~~~~aV 667 (764)
T KOG1063|consen 626 ---------------------------------WSPD--EKYFATASRDKKVKVWEEPDLR---DKYISRFACLKFSLAV 667 (764)
T ss_pred ---------------------------------cCcc--cceeEEecCCceEEEEeccCch---hhhhhhhchhccCCce
Confidence 3333 6689999998 99999998821 133333 2222 223
Q ss_pred ---eeeeeeecCCceeEEEEEeecCcEEEeecCCcc
Q 001279 818 ---CWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLE 850 (1108)
Q Consensus 818 ---~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~ 850 (1108)
.|.+++.. ++..+++++...|.|.++..+..+
T Consensus 668 TAv~~~~~~~~-e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 668 TAVAYLPVDHN-EKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred eeEEeeccccc-cccceEEEEecccEEEEEeccccc
Confidence 23333333 455689999999999999988433
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=5.1e-24 Score=235.56 Aligned_cols=199 Identities=22% Similarity=0.334 Sum_probs=165.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
||++.|++++|+|++++|++|+.||.|++|+..... ......|..++..+.|++++.+|++++.++.|.+||+.+++.+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 789999999999999999999999999999997554 3456678889999999999999999999999999999987666
Q ss_pred eee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 112 ~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
..+ .+...|+++.++++++++++++.+|.|++|++.. +... +.+..|. ..|.++.|+| ++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~---~~~~~~~------------~~i~~~~~~~--~~ 147 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKCL---TTLRGHT------------DWVNSVAFSP--DG 147 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--cEEE---EEeccCC------------CcEEEEEEcC--cC
Confidence 655 5667899999999999999998899999999873 2333 2244443 6799999988 46
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 191 NRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 191 ~~ll~~~~dg~V~lWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
.++++++.+|.|++||+.+++..... .| ...|++++|. |++..+++++
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------------------------------~~~i~~~~~~-~~~~~l~~~~ 196 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGH------------------------------TGEVNSVAFS-PDGEKLLSSS 196 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecC------------------------------ccccceEEEC-CCcCEEEEec
Confidence 66666666999999999877654432 22 5689999986 9999999999
Q ss_pred ccCcEEEEecCC
Q 001279 270 IDGDILLWNTST 281 (1108)
Q Consensus 270 ~DG~I~lWd~~~ 281 (1108)
.||.|++||+..
T Consensus 197 ~~~~i~i~d~~~ 208 (289)
T cd00200 197 SDGTIKLWDLST 208 (289)
T ss_pred CCCcEEEEECCC
Confidence 999999999864
No 52
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=7.9e-26 Score=237.27 Aligned_cols=198 Identities=14% Similarity=0.270 Sum_probs=167.4
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc-ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~ 112 (1108)
....|..+.+.|+|+.|.+|+..|.+.||+.... -.+.+..|..+|+++.|++++.+++|++.+|.|++|+..-..+..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 3456888999999999999999999999998432 223567899999999999999999999999999999987776665
Q ss_pred eecCC-CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 113 CLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 113 ~~~~~-~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
...|. ..|++++|+|....++++++||+|+||++.......+ +.+|. --|.++.|||. ..
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v-----L~GHg------------wdVksvdWHP~--kg 235 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV-----LRGHG------------WDVKSVDWHPT--KG 235 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe-----eccCC------------CCcceeccCCc--cc
Confidence 55555 8899999999999999999999999999864322222 45654 56999999995 44
Q ss_pred EEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001279 192 RVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1108)
Q Consensus 192 ~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1108)
++++++.|..|++||.+++.++. +-+| ...|..+.|. +++.+|++++.
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~H------------------------------KntVl~~~f~-~n~N~Llt~sk 284 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGH------------------------------KNTVLAVKFN-PNGNWLLTGSK 284 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhc------------------------------cceEEEEEEc-CCCCeeEEccC
Confidence 59999999999999999998764 4445 7889999986 99999999999
Q ss_pred cCcEEEEecCC
Q 001279 271 DGDILLWNTST 281 (1108)
Q Consensus 271 DG~I~lWd~~~ 281 (1108)
|..++++|+.+
T Consensus 285 D~~~kv~DiR~ 295 (464)
T KOG0284|consen 285 DQSCKVFDIRT 295 (464)
T ss_pred CceEEEEehhH
Confidence 99999999963
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=1.6e-25 Score=240.17 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=170.4
Q ss_pred eeeCCCCCceEEEEcC-CCCEEEEEECCCcEEEEec--CCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001279 30 VHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGG--DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp-~~~~LA~Gs~dG~I~iw~~--~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~ 106 (1108)
.-.||+..|+++.|-| .+.+|++|+.|+.|+||++ ++..+....+|..+|+.++|+++|..++|++-|+.|++||++
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence 3369999999999999 8999999999999999998 345556888999999999999999999999999999999999
Q ss_pred CCeeeeeecCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 107 SRSLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 107 s~~~~~~~~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
+|+++..+.....++|+.|.|++ +.+++|..|+.|+.||... +++++. +..|- ++|..+.|-
T Consensus 289 TG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvqe---Yd~hL------------g~i~~i~F~ 351 (503)
T KOG0282|consen 289 TGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQE---YDRHL------------GAILDITFV 351 (503)
T ss_pred cceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccc--hHHHHH---HHhhh------------hheeeeEEc
Confidence 99999999999999999999998 8899999999999998765 566543 33332 789999996
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE
Q 001279 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1108)
| ++.++++++.|+.|+||+....-.+...... +.-...|+.- .|++.++
T Consensus 352 ~--~g~rFissSDdks~riWe~~~~v~ik~i~~~----------------------------~~hsmP~~~~-~P~~~~~ 400 (503)
T KOG0282|consen 352 D--EGRRFISSSDDKSVRIWENRIPVPIKNIADP----------------------------EMHTMPCLTL-HPNGKWF 400 (503)
T ss_pred c--CCceEeeeccCccEEEEEcCCCccchhhcch----------------------------hhccCcceec-CCCCCee
Confidence 6 8999999999999999999887554332110 0223344553 4999999
Q ss_pred EEEEccCcEEEEecC
Q 001279 266 AVGYIDGDILLWNTS 280 (1108)
Q Consensus 266 ~sg~~DG~I~lWd~~ 280 (1108)
++-+.|+.|.++...
T Consensus 401 ~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 401 AAQSMDNYIAIFSTV 415 (503)
T ss_pred hhhccCceEEEEecc
Confidence 999999999998864
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6.3e-24 Score=249.93 Aligned_cols=291 Identities=18% Similarity=0.313 Sum_probs=230.7
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe--eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~--~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
+...|...|+++.|+++|.+|++++.++.|++|+..+.. .+..+ .|...|..++|+|++.++++|+.|++|+||++
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~- 232 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL- 232 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec-
Confidence 334457789999999999999999999999999997777 55554 78889999999999999999999999999999
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCccccccc
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDG 226 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~ 226 (1108)
..++...+ .+.+|. ..|++++|+| +++++++|+.|++|+|||+.+++++. +.+|
T Consensus 233 ~~~~~~~~---~l~gH~------------~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-------- 287 (456)
T KOG0266|consen 233 KDDGRNLK---TLKGHS------------TYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-------- 287 (456)
T ss_pred cCCCeEEE---EecCCC------------CceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeecc--------
Confidence 33345553 377887 8899999999 56889999999999999999987765 4445
Q ss_pred ccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccC
Q 001279 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1108)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~ 306 (1108)
...|+++++ +++|..|++++.||.|++||+.++... ..
T Consensus 288 ----------------------s~~is~~~f-~~d~~~l~s~s~d~~i~vwd~~~~~~~----------~~--------- 325 (456)
T KOG0266|consen 288 ----------------------SDGISGLAF-SPDGNLLVSASYDGTIRVWDLETGSKL----------CL--------- 325 (456)
T ss_pred ----------------------CCceEEEEE-CCCCCEEEEcCCCccEEEEECCCCcee----------ee---------
Confidence 778999995 599999999999999999999765200 00
Q ss_pred CccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCC
Q 001279 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1108)
Q Consensus 307 ~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~ 386 (1108)
..+ .+..
T Consensus 326 ----~~~-------------------~~~~-------------------------------------------------- 332 (456)
T KOG0266|consen 326 ----KLL-------------------SGAE-------------------------------------------------- 332 (456)
T ss_pred ----ecc-------------------cCCC--------------------------------------------------
Confidence 000 0000
Q ss_pred CcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccC
Q 001279 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1108)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1108)
.+
T Consensus 333 -----------------------------------------------~~------------------------------- 334 (456)
T KOG0266|consen 333 -----------------------------------------------NS------------------------------- 334 (456)
T ss_pred -----------------------------------------------CC-------------------------------
Confidence 00
Q ss_pred CCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCC---CeEEEE
Q 001279 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA---PVSTLS 543 (1108)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~---~Vt~la 543 (1108)
. .+..+.++|++.++++++.|+++++||+..+.+. ....+|.. .+.+..
T Consensus 335 ----------------~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-----------~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 335 ----------------A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-----------GTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ----------------C-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-----------eeecccCCcceeEeccc
Confidence 0 0112367788889999999999999999988765 23445544 344455
Q ss_pred EEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeec-CcCEEEEEEcCCCCEEEEEe
Q 001279 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NSPVRALQFTSSGAKLAVGF 622 (1108)
Q Consensus 544 fs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-~~~Vtslafspdg~~LavGs 622 (1108)
+++.+.++++|+.|+.|.+|++.... .+..+.+| ...|..++++|..+++++++
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~-------------------------~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGG-------------------------ILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccc-------------------------hhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 67899999999999999999998742 24556788 89999999999999999998
Q ss_pred --CCCeEEEEEcc
Q 001279 623 --ECGRVAVLDMN 633 (1108)
Q Consensus 623 --~dG~V~vwd~~ 633 (1108)
.|+.+++|...
T Consensus 442 ~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLIRLWKYD 454 (456)
T ss_pred cCCCceEEEecCC
Confidence 78999999764
No 55
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.2e-23 Score=229.88 Aligned_cols=496 Identities=13% Similarity=0.157 Sum_probs=296.3
Q ss_pred CCCCceEEEEcCCCCEEEE-EECC-CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001279 34 IPATASILAFDHIQRLLAI-ATLD-GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~-Gs~d-G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
|...++|+||+|.++|+++ |+.. -.|.+|+-......---.-...|+.++|+.|+.|.++++ ..+|++|.++.+...
T Consensus 121 HKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~Ky 199 (1080)
T KOG1408|consen 121 HKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKY 199 (1080)
T ss_pred ccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccc
Confidence 7789999999999999985 4433 445677653322221122245799999999999999987 789999999766411
Q ss_pred -------------eeecCC------------------------------------------CCeeEEEEecCCCEEEEEe
Q 001279 112 -------------CCLKWE------------------------------------------SNITAFSVISGSHFMYIGD 136 (1108)
Q Consensus 112 -------------~~~~~~------------------------------------------~~Itsl~~~~~~~~l~vg~ 136 (1108)
..+... ..-.|+++ ..+++++|+
T Consensus 200 kdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgC 277 (1080)
T KOG1408|consen 200 KDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACGC 277 (1080)
T ss_pred cCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEEee
Confidence 000000 01122333 467999999
Q ss_pred CCCcEEEEEEecCC--Ceeeeeceeecccc--c-c-cc--cCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEcc
Q 001279 137 ENGLMSVIKYDADE--GKLFQLPYNISADA--L-S-EK--AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1108)
Q Consensus 137 ~dg~V~vw~~d~~~--~~l~~~~~~i~~~~--~-~-~~--~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~ 208 (1108)
.+|.|++++-.+.+ +++... ..+..+. . + +. .+.....-.-..++.|.|. ...|.+.|.|..+.|||++
T Consensus 278 a~g~vrlFnp~tL~y~~Tlpr~-halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet--~~klscVYndhSlYvWDvr 354 (1080)
T KOG1408|consen 278 AKGMVRLFNPETLDYAGTLPRS-HALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET--TDKLSCVYNDHSLYVWDVR 354 (1080)
T ss_pred ccceeeecCcchhhhccccccc-cccccchhhcccccccccccCcccCCceeEEEecCC--CceEEEEEcCceEEEEecc
Confidence 99999998865421 122110 0010000 0 0 00 0011111123567889774 5559999999999999997
Q ss_pred CC----eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCC
Q 001279 209 EA----QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 284 (1108)
Q Consensus 209 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~ 284 (1108)
.- ++....-|..-.|.-+.. ..+-..-++.| . |.+ .+++++.||+|++|++.....
T Consensus 355 D~~kvgk~~s~lyHS~ciW~Ve~~-----------------p~nv~~~~~ac-l-p~~-cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 355 DVNKVGKCSSMLYHSACIWDVENL-----------------PCNVHSPTAAC-L-PRG-CFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred ccccccceeeeeeccceeeeeccc-----------------cccccCccccc-C-Ccc-ceeEecCCCcEEEeecccccc
Confidence 63 333333343222221110 00122234455 3 544 489999999999999976321
Q ss_pred CCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeee
Q 001279 285 TKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVD 364 (1108)
Q Consensus 285 ~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~ 364 (1108)
+.+.+-+..+... ..|.. ..+. ..++.-.+... .. ....-.
T Consensus 415 ---------n~vyrRNils~~l-~ki~y---------~d~~-~q~~~d~~~~~----------------fd---ka~~s~ 455 (1080)
T KOG1408|consen 415 ---------NQVYRRNILSANL-SKIPY---------EDST-QQIMHDASAGI----------------FD---KALVST 455 (1080)
T ss_pred ---------cceeecccchhhh-hcCcc---------ccCc-hhhhhhccCCc----------------cc---ccchhh
Confidence 1111111111100 00000 0000 00000000000 00 000011
Q ss_pred cCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEe
Q 001279 365 ITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFML 444 (1108)
Q Consensus 365 l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~ 444 (1108)
+.....+..++.+|+.. .|+..-..|.+.+|+...+.... .+..|++.|.|..|..
T Consensus 456 ~d~r~G~R~~~vSp~gq--------hLAsGDr~GnlrVy~Lq~l~~~~----------------~~eAHesEilcLeyS~ 511 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQ--------HLASGDRGGNLRVYDLQELEYTC----------------FMEAHESEILCLEYSF 511 (1080)
T ss_pred cCcccceEEEEECCCcc--------eecccCccCceEEEEehhhhhhh----------------heecccceeEEEeecC
Confidence 12223567778888744 45555556889998866554333 2334888888888753
Q ss_pred ccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeec
Q 001279 445 LPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALD 524 (1108)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~ 524 (1108)
|..+ .++||+|+.|..|.|+|+......
T Consensus 512 --------------------------------p~~~--------------~kLLASasrdRlIHV~Dv~rny~l------ 539 (1080)
T KOG1408|consen 512 --------------------------------PVLT--------------NKLLASASRDRLIHVYDVKRNYDL------ 539 (1080)
T ss_pred --------------------------------chhh--------------hHhhhhccCCceEEEEecccccch------
Confidence 1111 138999999999999999865522
Q ss_pred cccceeeccCCCCCeEEEEEEeCC--CeEEEEecCceEEEEEecCCCCCccccccc--cC--c-----------------
Q 001279 525 AEVQGIEVAGSRAPVSTLSFCFIN--SSLAVGNEFGLVYIYNLNGSLDAKNFLFVL--ET--K----------------- 581 (1108)
Q Consensus 525 ~~~~~~~l~~h~~~Vt~lafs~d~--~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~--~~--~----------------- 581 (1108)
..++.+|+..||++.|.-.| ..+++++.|..+.+-...+ ...++. |+. .+ +
T Consensus 540 ----~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk-~~~g~~-f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 540 ----VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK-ASSGRL-FPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred ----hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcc-ccCcee-ccccccccccceEEEeeeCCCcceEEE
Confidence 03588999999999998877 6788888887654332221 111111 110 00 0
Q ss_pred ----c--ceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEE
Q 001279 582 ----S--EVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMT 655 (1108)
Q Consensus 582 ----~--~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~ 655 (1108)
+ .+.++..++-.....-...|.+..--|...|.|-|||+...|.++.++|+-+++++ ..+.||+..|+.+.
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv---A~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV---AQMTGHSEAVTGVK 690 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh---hhhcCcchheeeee
Confidence 0 13344444433333334457788889999999999999999999999999999998 46688999999999
Q ss_pred eeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 656 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 656 fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
|.+.|.+ |++.+.||.|+||-...
T Consensus 691 F~nDCkH----------------------lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 691 FLNDCKH----------------------LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ecccchh----------------------heeecCCceEEEEECch
Confidence 9977665 99999999999999765
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=2.1e-25 Score=228.50 Aligned_cols=153 Identities=13% Similarity=0.207 Sum_probs=116.4
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
.+|.|+.|+ ...+++|..|.+|+|||.+..+++ .+.+|++.|-||+|.. +.++|+|+|.+|+|||+++++.+..+
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHH
Confidence 458899986 567889999999999999887765 7889999999999975 48999999999999999999999887
Q ss_pred -cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 115 -~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.|...|..+.|+ ..+|++++.|.++.||+++.... ... ...+-+|. .+|..|.| +.+++
T Consensus 274 ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~-it~-rrVLvGHr------------AaVNvVdf----d~kyI 333 (499)
T KOG0281|consen 274 IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD-ITL-RRVLVGHR------------AAVNVVDF----DDKYI 333 (499)
T ss_pred hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH-HHH-HHHHhhhh------------hheeeecc----ccceE
Confidence 677889999886 67999999999999999986321 100 01133443 56666766 33455
Q ss_pred EEEECCCeEEEEEccCCeE
Q 001279 194 LIAYENALVILWDVSEAQI 212 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~ 212 (1108)
++++.|.+|++|+..+.+.
T Consensus 334 VsASgDRTikvW~~st~ef 352 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEF 352 (499)
T ss_pred EEecCCceEEEEeccceee
Confidence 5555555555555555443
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=3.7e-25 Score=237.40 Aligned_cols=295 Identities=13% Similarity=0.193 Sum_probs=230.2
Q ss_pred CCcceEEeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEEcCC-Ceeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcE
Q 001279 65 DGIEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES-RSLACCL-KWESNITAFSVISGSHFMYIGDENGLM 141 (1108)
Q Consensus 65 ~~~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd~~s-~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V 141 (1108)
+........+|+..|+++.|.| .+.+|+|++.|+.|+|||+.. +.++.++ .|..+|..++|++++..+++++-|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 3445567889999999999999 778889999999999999876 7777776 788999999999999999999999999
Q ss_pred EEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcc
Q 001279 142 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDL 221 (1108)
Q Consensus 142 ~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~ 221 (1108)
++||.++ |+..+. +... ..++|+.|||.+ .+.+++|..|+.|+.||+++++++..+++
T Consensus 283 KlwDtET--G~~~~~---f~~~-------------~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~--- 340 (503)
T KOG0282|consen 283 KLWDTET--GQVLSR---FHLD-------------KVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDR--- 340 (503)
T ss_pred eeecccc--ceEEEE---EecC-------------CCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHh---
Confidence 9999775 566532 3321 568999999973 57799999999999999999998765443
Q ss_pred cccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeec
Q 001279 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLEL 301 (1108)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~ 301 (1108)
+-+.|..+.|+ ++|+.+++.+.|+++++|+....-..+
T Consensus 341 --------------------------hLg~i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik--------------- 378 (503)
T KOG0282|consen 341 --------------------------HLGAILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIK--------------- 378 (503)
T ss_pred --------------------------hhhheeeeEEc-cCCceEeeeccCccEEEEEcCCCccch---------------
Confidence 16688999988 999999999999999999986431000
Q ss_pred ccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCC
Q 001279 302 SSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1108)
Q Consensus 302 ~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~ 381 (1108)
.. +. .
T Consensus 379 ----------~i--------------------------------~~----~----------------------------- 383 (503)
T KOG0282|consen 379 ----------NI--------------------------------AD----P----------------------------- 383 (503)
T ss_pred ----------hh--------------------------------cc----h-----------------------------
Confidence 00 00 0
Q ss_pred CCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhh
Q 001279 382 ATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATF 461 (1108)
Q Consensus 382 ~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~ 461 (1108)
T Consensus 384 -------------------------------------------------------------------------------- 383 (503)
T KOG0282|consen 384 -------------------------------------------------------------------------------- 383 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCC--Ce
Q 001279 462 TKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA--PV 539 (1108)
Q Consensus 462 ~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~--~V 539 (1108)
....+.++..+|++.+++.-+.|+.|.++.+..... ++.+ ..+.+|.. --
T Consensus 384 --------------------~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-----~nkk---K~feGh~vaGys 435 (503)
T KOG0282|consen 384 --------------------EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-----LNKK---KRFEGHSVAGYS 435 (503)
T ss_pred --------------------hhccCcceecCCCCCeehhhccCceEEEEecccccc-----cCHh---hhhcceeccCce
Confidence 000012335677888888889999999987543321 1110 12556643 34
Q ss_pred EEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCC-CCEE
Q 001279 540 STLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKL 618 (1108)
Q Consensus 540 t~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspd-g~~L 618 (1108)
..+.|||||++|++|+.||.|.+|++.+.. .+..++.|.++++.+.|+|- ...+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k-------------------------l~~~lkah~~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTK-------------------------LVSKLKAHDQPCIGVDWHPVEPSKV 490 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhh-------------------------hhhccccCCcceEEEEecCCCccee
Confidence 668999999999999999999999998862 35667899999999999994 4679
Q ss_pred EEEeCCCeEEEEE
Q 001279 619 AVGFECGRVAVLD 631 (1108)
Q Consensus 619 avGs~dG~V~vwd 631 (1108)
|+++.||.|++||
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999997
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.3e-24 Score=214.04 Aligned_cols=204 Identities=18% Similarity=0.223 Sum_probs=172.6
Q ss_pred eeeeCCCCCceEEEEc---CCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001279 29 AVHYGIPATASILAFD---HIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 29 ~~~~G~~~~is~la~s---p~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd 104 (1108)
..-+||...|..++|| |+|-+|.+++.||.=-+-+.++..-+ ...+|.+.|...+...|..+-++++.|-+-+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4567999999999998 57889999999998888888766655 6778999999999999988999999999999999
Q ss_pred cCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 105 LESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 105 ~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
.-++..++++.|...|.+++|+.+.++|++|+.+..++|++++..+..+ -.+.+|. +.|..+.|
T Consensus 88 a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App----~E~~ght------------g~Ir~v~w 151 (334)
T KOG0278|consen 88 AVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP----KEISGHT------------GGIRTVLW 151 (334)
T ss_pred hhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc----hhhcCCC------------CcceeEEE
Confidence 9999999999999999999999999999999999999999987543222 3355555 88999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
.. ..+.++++..|++||+||..++..+..... ...|+++-. +++|++
T Consensus 152 c~--eD~~iLSSadd~tVRLWD~rTgt~v~sL~~------------------------------~s~VtSlEv-s~dG~i 198 (334)
T KOG0278|consen 152 CH--EDKCILSSADDKTVRLWDHRTGTEVQSLEF------------------------------NSPVTSLEV-SQDGRI 198 (334)
T ss_pred ec--cCceEEeeccCCceEEEEeccCcEEEEEec------------------------------CCCCcceee-ccCCCE
Confidence 54 555699999999999999999988776544 667888885 599987
Q ss_pred EEEEEccCcEEEEecCCC
Q 001279 265 LAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~~~ 282 (1108)
|.+++ .+.|.+||..+-
T Consensus 199 lTia~-gssV~Fwdaksf 215 (334)
T KOG0278|consen 199 LTIAY-GSSVKFWDAKSF 215 (334)
T ss_pred EEEec-CceeEEeccccc
Confidence 66654 567999998643
No 59
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=7.7e-22 Score=212.08 Aligned_cols=460 Identities=14% Similarity=0.104 Sum_probs=308.8
Q ss_pred CCCCCceEEEEcCC--CCEEEEE--ECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 33 GIPATASILAFDHI--QRLLAIA--TLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 33 G~~~~is~la~sp~--~~~LA~G--s~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
+....|+|+||++. |.+|+.- +.+..+-+||-+..... -....+..|....|+|-...|+..+..+++.+|+++.
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 46778999999973 4455443 33466788998655444 2333556788999999777777777799999999999
Q ss_pred Ceeeeeec-----CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 108 RSLACCLK-----WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 108 ~~~~~~~~-----~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
+.+..... ...-|.|++|.++++ +++|+++|+|.||.-+. .++.+. ...|. +.|.++
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~--~~~~k~---~~aH~------------ggv~~L 293 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT--NRISKQ---VHAHD------------GGVFSL 293 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC--ceEEeE---eeecC------------CceEEE
Confidence 97776552 235799999999887 67999999999999754 344432 33665 889999
Q ss_pred ecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
+. ..+|+ |++|..|..|..||-.-.+.... +++ ++.+.|..+. +.+
T Consensus 294 ~~--lr~Gt-llSGgKDRki~~Wd~~y~k~r~~----------elP------------------e~~G~iRtv~---e~~ 339 (626)
T KOG2106|consen 294 CM--LRDGT-LLSGGKDRKIILWDDNYRKLRET----------ELP------------------EQFGPIRTVA---EGK 339 (626)
T ss_pred EE--ecCcc-EeecCccceEEeccccccccccc----------cCc------------------hhcCCeeEEe---cCC
Confidence 98 55898 88899999999999222222111 010 1145666666 333
Q ss_pred CEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcce
Q 001279 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1108)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ 342 (1108)
.-|+.|...+.|..=++.++-. .+...|-...+.++..++..+|++.|++.
T Consensus 340 ~di~vGTtrN~iL~Gt~~~~f~------------------------~~v~gh~delwgla~hps~~q~~T~gqdk----- 390 (626)
T KOG2106|consen 340 GDILVGTTRNFILQGTLENGFT------------------------LTVQGHGDELWGLATHPSKNQLLTCGQDK----- 390 (626)
T ss_pred CcEEEeeccceEEEeeecCCce------------------------EEEEecccceeeEEcCCChhheeeccCcc-----
Confidence 3388888888887766654311 11112222223345666778899999998
Q ss_pred EEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCC
Q 001279 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1108)
Q Consensus 343 ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 422 (1108)
.+.+|... +.. ...-...++....|.|. ..+++.+..|...+.|......
T Consensus 391 --~v~lW~~~--k~~-----wt~~~~d~~~~~~fhps---------g~va~Gt~~G~w~V~d~e~~~l------------ 440 (626)
T KOG2106|consen 391 --HVRLWNDH--KLE-----WTKIIEDPAECADFHPS---------GVVAVGTATGRWFVLDTETQDL------------ 440 (626)
T ss_pred --eEEEccCC--cee-----EEEEecCceeEeeccCc---------ceEEEeeccceEEEEeccccee------------
Confidence 88888722 111 22223335555556555 2566777888888877322100
Q ss_pred CccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEe
Q 001279 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1108)
Q Consensus 423 ~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs 502 (1108)
... .+. .+++++++++|+|.+||.|+
T Consensus 441 --------------------v~~--------------------------------~~d--~~~ls~v~ysp~G~~lAvgs 466 (626)
T KOG2106|consen 441 --------------------VTI--------------------------------HTD--NEQLSVVRYSPDGAFLAVGS 466 (626)
T ss_pred --------------------EEE--------------------------------Eec--CCceEEEEEcCCCCEEEEec
Confidence 000 001 34556778999999999999
Q ss_pred cCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCcc
Q 001279 503 HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKS 582 (1108)
Q Consensus 503 ~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~ 582 (1108)
.|+.|+||.++......... -+.|..+|+.|+||+|+++|.+-+-|-.+..|.-..-..-.+
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~---------~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts--------- 528 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRV---------GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS--------- 528 (626)
T ss_pred CCCeEEEEEECCCCcEEEEe---------eeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce---------
Confidence 99999999988665331110 123347999999999999999999999999994332211111
Q ss_pred ceeecccCCcceEEEEE----eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeee
Q 001279 583 EVHALPEGKISLCRAVF----SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 658 (1108)
Q Consensus 583 ~~~~~~~~~g~~~~~~~----~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~ 658 (1108)
+.++.-. .+.|..-| ..+..-|.+++-+...+++|+|.+.|+|++|...-.+.....+.+.+|++-|++++|.-
T Consensus 529 -~kDvkW~-t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~ 606 (626)
T KOG2106|consen 529 -VKDVKWA-TYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC 606 (626)
T ss_pred -ecceeee-eeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEee
Confidence 1111100 01122211 34677788999999999999999999999999876555544567788999999999993
Q ss_pred cccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 659 FKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 659 ~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
. ...|.+.+.|.+|..|+.
T Consensus 607 ~----------------------d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 607 K----------------------DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred C----------------------CceEEecCCCceEEEEEe
Confidence 2 455777779999999985
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.5e-24 Score=222.71 Aligned_cols=289 Identities=15% Similarity=0.199 Sum_probs=221.7
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|..+|.-+.|+++|+|||+++.|.+.-||.+..+.. .....++.+|. .+|..+.|+| |..+|+
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~------------~~V~yi~wSP--DdryLl 285 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHS------------QPVSYIMWSP--DDRYLL 285 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeeccc------------CceEEEEECC--CCCeEE
Confidence 6788999999999999999999999999999876543 22235567776 8899999999 566688
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcE
Q 001279 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I 274 (1108)
+++.+..+.+||+.++.....+.+. ....++|++|. |||..+++|+.|+.+
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~----------------------------~~~S~~sc~W~-pDg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSG----------------------------LGFSVSSCAWC-PDGFRFVTGSPDRTI 336 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccC----------------------------cCCCcceeEEc-cCCceeEecCCCCcE
Confidence 8888888999999999887766541 04578999997 999999999999999
Q ss_pred EEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccc
Q 001279 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1108)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1108)
..||..... . ..|.+.. .
T Consensus 337 ~~wdlDgn~-------------~---------------~~W~gvr---~------------------------------- 354 (519)
T KOG0293|consen 337 IMWDLDGNI-------------L---------------GNWEGVR---D------------------------------- 354 (519)
T ss_pred EEecCCcch-------------h---------------hcccccc---c-------------------------------
Confidence 999986431 0 0111110 0
Q ss_pred cccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCC
Q 001279 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1108)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1108)
..+.
T Consensus 355 --------------~~v~-------------------------------------------------------------- 358 (519)
T KOG0293|consen 355 --------------PKVH-------------------------------------------------------------- 358 (519)
T ss_pred --------------ceeE--------------------------------------------------------------
Confidence 0011
Q ss_pred CcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001279 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1108)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~ 514 (1108)
.+++++||+.+++-..|..|++++..+
T Consensus 359 -----------------------------------------------------dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 359 -----------------------------------------------------DLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred -----------------------------------------------------EEEEcCCCcEEEEEecccceeeechhh
Confidence 124566777777778999999999887
Q ss_pred CceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcce
Q 001279 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1108)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 594 (1108)
...+. +-....+|++++.|.|++++.+--.+..+.+||+..+.
T Consensus 386 ~~dr~------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~------------------------- 428 (519)
T KOG0293|consen 386 RVDRG------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK------------------------- 428 (519)
T ss_pred hhhhc------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh-------------------------
Confidence 66441 11223489999999999999999999999999998541
Q ss_pred EEEEEeecCcC--EEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCC
Q 001279 595 CRAVFSLVNSP--VRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNH 671 (1108)
Q Consensus 595 ~~~~~~~h~~~--Vtslafsp-dg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~ 671 (1108)
.+..+.+|... |-.-+|-- +..++|+|++|+.|+||+..++.++ ..++||...|.+++|+|.
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll---~~LsGHs~~vNcVswNP~------------ 493 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL---AVLSGHSKTVNCVSWNPA------------ 493 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee---EeecCCcceeeEEecCCC------------
Confidence 23445565443 33334543 5589999999999999999999988 578999999999999964
Q ss_pred CCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 672 SEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 672 ~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
+..++++++.||+|++|...
T Consensus 494 ---------~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 494 ---------DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ---------CHHHhhccCCCCeEEEecCC
Confidence 24579999999999999764
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=7.1e-25 Score=224.68 Aligned_cols=276 Identities=13% Similarity=0.234 Sum_probs=212.6
Q ss_pred CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE
Q 001279 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1108)
Q Consensus 118 ~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~ 197 (1108)
..|.|+.+ +...+++|..|.+|+|||.... .+. |.+.+|. +.|.|+.| +...+++|+
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~--~c~---~~L~GHt------------GSVLCLqy----d~rviisGS 254 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL--ECL---KILTGHT------------GSVLCLQY----DERVIVSGS 254 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccH--HHH---HhhhcCC------------CcEEeeec----cceEEEecC
Confidence 46888877 4667999999999999997642 222 5577887 99999999 555789999
Q ss_pred CCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEE
Q 001279 198 ENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 276 (1108)
Q Consensus 198 ~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~l 276 (1108)
+|.+|+|||+.+++++. +++| ...|..+.|. ..++++++.|.++.+
T Consensus 255 SDsTvrvWDv~tge~l~tlihH------------------------------ceaVLhlrf~---ng~mvtcSkDrsiaV 301 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHH------------------------------CEAVLHLRFS---NGYMVTCSKDRSIAV 301 (499)
T ss_pred CCceEEEEeccCCchhhHHhhh------------------------------cceeEEEEEe---CCEEEEecCCceeEE
Confidence 99999999999998865 4555 5567778853 458999999999999
Q ss_pred EecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccc
Q 001279 277 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 356 (1108)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~ 356 (1108)
||+....... +. . ++.
T Consensus 302 Wdm~sps~it---------~r-----------r-----------------------------------VLv--------- 317 (499)
T KOG0281|consen 302 WDMASPTDIT---------LR-----------R-----------------------------------VLV--------- 317 (499)
T ss_pred EeccCchHHH---------HH-----------H-----------------------------------HHh---------
Confidence 9996431000 00 0 000
Q ss_pred cceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCc
Q 001279 357 LRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPI 436 (1108)
Q Consensus 357 ~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1108)
|
T Consensus 318 -----------------------------------------G-------------------------------------- 318 (499)
T KOG0281|consen 318 -----------------------------------------G-------------------------------------- 318 (499)
T ss_pred -----------------------------------------h--------------------------------------
Confidence 0
Q ss_pred ceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCc
Q 001279 437 MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV 516 (1108)
Q Consensus 437 it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~ 516 (1108)
|-..++. ..-+.+++++++.|.+|++|++.+..
T Consensus 319 ---------------------------------------------HrAaVNv--Vdfd~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 319 ---------------------------------------------HRAAVNV--VDFDDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred ---------------------------------------------hhhheee--eccccceEEEecCCceEEEEecccee
Confidence 0000000 11223389999999999999999988
Q ss_pred eeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEE
Q 001279 517 FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCR 596 (1108)
Q Consensus 517 l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 596 (1108)
+. ..+.+|...|.|+.+ .++++++|+.|.+|++|++..+ .|+
T Consensus 352 fv-----------Rtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-------------------------~cL 393 (499)
T KOG0281|consen 352 FV-----------RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-------------------------ACL 393 (499)
T ss_pred ee-----------hhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-------------------------HHH
Confidence 76 568899999999998 4899999999999999999886 367
Q ss_pred EEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE------EEeecCCCCCCceEEEEeeecccCccccCCCC
Q 001279 597 AVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL------FFTDDISGSSSPIISMTWTEFKNTHSLAKNPN 670 (1108)
Q Consensus 597 ~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~------~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~ 670 (1108)
..+.+|..-|.|+.|. .+.+++|.-||+|+|||+..+.-- +....+..|++.|..|+|.
T Consensus 394 RvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------- 458 (499)
T KOG0281|consen 394 RVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------- 458 (499)
T ss_pred HHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-------------
Confidence 7889999999999996 557999999999999999764211 1123456799999999999
Q ss_pred CCCCCCCCCCCccEEEEEcCCccEEEEeCCCcc
Q 001279 671 HSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 671 ~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1108)
...+++.+.|.+|.|||...|-
T Consensus 459 -----------~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 459 -----------EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred -----------ceEEEeccCCCeEEEEEcCCCC
Confidence 6679999999999999976543
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.2e-23 Score=220.06 Aligned_cols=281 Identities=18% Similarity=0.288 Sum_probs=216.9
Q ss_pred CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001279 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l 153 (1108)
...+|++|+|+|...+=+.++..-.+.+++..+......+ .+...|.++.|-.||.+++.|++.|.|+|+|+.. ..+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHH
Confidence 3468999999997666666666788999999999888765 6888999999999999999999999999999543 223
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEE-EEeCCCcccccccccCCCC
Q 001279 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPS 232 (1108)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (1108)
... +.+|. .+|..+.|+|. +++.+++|+.|+.+++||+++..++ .+.+|
T Consensus 103 LR~---~~ah~------------apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h-------------- 152 (487)
T KOG0310|consen 103 LRQ---LYAHQ------------APVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAELSGH-------------- 152 (487)
T ss_pred HHH---Hhhcc------------CceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEEecCC--------------
Confidence 322 55665 78999999997 6677889999999999999999764 46667
Q ss_pred CCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEE
Q 001279 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~ 312 (1108)
+.-|.|..|.+.++..+++|+.||.|++||..... .++
T Consensus 153 ----------------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------------------------~~v-- 190 (487)
T KOG0310|consen 153 ----------------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------------------------SRV-- 190 (487)
T ss_pred ----------------cceeEeeccccCCCeEEEecCCCceEEEEEeccCC------------------------cee--
Confidence 67788899886777899999999999999986431 000
Q ss_pred EEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEE
Q 001279 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1108)
Q Consensus 313 ~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~ 392 (1108)
+.+....++.++++.|.
T Consensus 191 --------------------------------------------------~elnhg~pVe~vl~lps------------- 207 (487)
T KOG0310|consen 191 --------------------------------------------------VELNHGCPVESVLALPS------------- 207 (487)
T ss_pred --------------------------------------------------EEecCCCceeeEEEcCC-------------
Confidence 22222233434333333
Q ss_pred EEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccC
Q 001279 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1108)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1108)
T Consensus 208 -------------------------------------------------------------------------------- 207 (487)
T KOG0310|consen 208 -------------------------------------------------------------------------------- 207 (487)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEE
Q 001279 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1108)
Q Consensus 473 ~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~La 552 (1108)
|.++|+++. ..||+||+.++.... .....|...||||++..+++.|+
T Consensus 208 ----------------------gs~iasAgG-n~vkVWDl~~G~qll----------~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 208 ----------------------GSLIASAGG-NSVKVWDLTTGGQLL----------TSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred ----------------------CCEEEEcCC-CeEEEEEecCCceeh----------hhhhcccceEEEEEeecCCceEe
Confidence 336777664 469999998665220 23456889999999999999999
Q ss_pred EEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001279 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1108)
Q Consensus 553 sg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd 631 (1108)
+|+-||.|++|++... +.+..+ ..+++|.+++.+|+++.+++|-.||.+.+-+
T Consensus 255 S~sLD~~VKVfd~t~~-------------------------Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNY-------------------------KVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred ecccccceEEEEccce-------------------------EEEEee-ecccceeeEEecCCCceEEEecccceeeeeh
Confidence 9999999999997664 223333 4689999999999999999999999876663
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=218.54 Aligned_cols=312 Identities=15% Similarity=0.233 Sum_probs=226.6
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.+...|++++++|.|-++++|+-|-.|++||+...+..+.. |+.- .......|.+++|+| .+..++
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~--fr~l----------~P~E~h~i~sl~ys~--Tg~~iL 230 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS--FRQL----------QPCETHQINSLQYSV--TGDQIL 230 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchh--hhcc----------CcccccccceeeecC--CCCeEE
Confidence 44568999999999999999999999999999864444331 1110 011125699999998 577899
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcE
Q 001279 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I 274 (1108)
+.+.....+|+|-+...+..+........ ...+...+...++|.||+.-+...+++++.||++
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~-----------------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIR-----------------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhhh-----------------hhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 99999999999998887765543211111 1112223467899999994445678999999999
Q ss_pred EEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccc
Q 001279 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1108)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1108)
++|++...... +.|++--
T Consensus 294 RiWdv~~~k~q---------------------------------------------------------~qVik~k----- 311 (641)
T KOG0772|consen 294 RIWDVNNTKSQ---------------------------------------------------------LQVIKTK----- 311 (641)
T ss_pred EEEecCCchhh---------------------------------------------------------eeEEeec-----
Confidence 99999743210 0011100
Q ss_pred cccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCC
Q 001279 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1108)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1108)
T Consensus 312 -------------------------------------------------------------------------------- 311 (641)
T KOG0772|consen 312 -------------------------------------------------------------------------------- 311 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001279 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1108)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~ 514 (1108)
..||.......+++++++.+||+|..||+|.+|+...
T Consensus 312 -------------------------------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~ 348 (641)
T KOG0772|consen 312 -------------------------------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS 348 (641)
T ss_pred -------------------------------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence 0000011112337889999999999999999999876
Q ss_pred CceeeEeeeccccceeeccCCCC--CeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCc
Q 001279 515 PVFKLICALDAEVQGIEVAGSRA--PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1108)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~--~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 592 (1108)
...++.+.++ +.|.. .|+||.||+||++|++-+.|++++||++.....
T Consensus 349 ~~v~p~~~vk--------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk---------------------- 398 (641)
T KOG0772|consen 349 RTVRPVMKVK--------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK---------------------- 398 (641)
T ss_pred cccccceEee--------eccCCCCceeEEEeccccchhhhccCCCceeeeecccccc----------------------
Confidence 6655444332 35555 899999999999999999999999999987532
Q ss_pred ceEEEEEeec--CcCEEEEEEcCCCCEEEEEeC------CCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCcc
Q 001279 593 SLCRAVFSLV--NSPVRALQFTSSGAKLAVGFE------CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHS 664 (1108)
Q Consensus 593 ~~~~~~~~~h--~~~Vtslafspdg~~LavGs~------dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~ 664 (1108)
++.++.+. .-+-|.++|||+.++|++|+. .|++.+||..+...++.+.. ....|..+.|.|.
T Consensus 399 --pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aSvv~~~Whpk----- 468 (641)
T KOG0772|consen 399 --PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STASVVRCLWHPK----- 468 (641)
T ss_pred --chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC---CCceEEEEeecch-----
Confidence 33333343 345789999999999999873 57899999999999987765 5788999999954
Q ss_pred ccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 665 ~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
-+.|++|+.||.+.|+=-
T Consensus 469 -----------------LNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 469 -----------------LNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred -----------------hhheeeecCCCceEEEEC
Confidence 566999999999988743
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.3e-23 Score=213.24 Aligned_cols=206 Identities=13% Similarity=0.151 Sum_probs=169.0
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE---------EeCCCCCCEEEEEEeeCCCEEEEEeCCCc
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---------LISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~---------~~~~h~~~V~~l~fs~d~~~L~S~s~d~~ 99 (1108)
...||-.+-+.|..|+|||++|++|+.||.|.+||..+..+. ..--+..+|.|++|+.|...|++++.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 456899999999999999999999999999999998654332 11226789999999999999999999999
Q ss_pred EEEEEcCCCeeeeee--cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001279 100 IQVWSLESRSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1108)
Q Consensus 100 I~vWd~~s~~~~~~~--~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1108)
|+||.+++|.++..+ .|...|+|+.|+.++..+++++-|.+++|.-+.. |++.+. +.+|. .
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS--GK~LKE---frGHs------------S 349 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS--GKCLKE---FRGHS------------S 349 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc--chhHHH---hcCcc------------c
Confidence 999999999999888 5889999999999999999999999999988764 565543 66766 7
Q ss_pred CeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEe
Q 001279 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1108)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1108)
.|+...|.+ +|.+++++++||+|+||+.++.++...+.. . ..+-+|.++.-
T Consensus 350 yvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------------~--------------~~d~~vnsv~~ 400 (508)
T KOG0275|consen 350 YVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKP-------------L--------------GTDYPVNSVIL 400 (508)
T ss_pred cccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccC-------------C--------------CCcccceeEEE
Confidence 799999965 899999999999999999999988665432 0 01456777665
Q ss_pred ecCCCCEEEEEEccCcEEEEecC
Q 001279 258 ASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
+..+...++++-..+++.+-++.
T Consensus 401 ~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 401 LPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred cCCCCceEEEEcCCCeEEEEecc
Confidence 54455677777777777776664
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=3.6e-22 Score=208.36 Aligned_cols=312 Identities=18% Similarity=0.261 Sum_probs=222.8
Q ss_pred eeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC-
Q 001279 109 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN- 187 (1108)
Q Consensus 109 ~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~- 187 (1108)
+++..+.|+.-|.++... ++++++|+.||.++||+.. |+... .+.+|. ++|.+++|.-.
T Consensus 97 ~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~---Gk~~~---~~~Ght------------~~ik~v~~v~~n 156 (423)
T KOG0313|consen 97 KPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK---GKSIK---TIVGHT------------GPIKSVAWVIKN 156 (423)
T ss_pred Cccccccchhhhhhhccc--CceEEEeecCCeeEEEecC---CceEE---EEecCC------------cceeeeEEEecC
Confidence 445555666667766665 8899999999999999987 55553 377777 78887777532
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEE-----EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 188 SSGNRVLIAYENALVILWDVSEAQII-----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 188 ~~~~~ll~~~~dg~V~lWdl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
....+|++++.|.++++|-++.+... ...|| ...|.++.- .++|
T Consensus 157 ~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH------------------------------k~~V~sVsv-~~sg 205 (423)
T KOG0313|consen 157 SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH------------------------------KRSVDSVSV-DSSG 205 (423)
T ss_pred CccceEEEecCCceEEEEEecCchhhhhHHhHhccc------------------------------ccceeEEEe-cCCC
Confidence 22346999999999999998876542 12355 788999994 5999
Q ss_pred CEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecc--cccCCccEEEEEeecccccccCCCceEEEEeCCCCCCc
Q 001279 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELS--SAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSE 340 (1108)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~--~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~ 340 (1108)
..+++|+.|..|.+|+..+...... ...++. -.+.... ....+.|+
T Consensus 206 tr~~SgS~D~~lkiWs~~~~~~~~~-E~~s~~-rrk~~~~~~~~~~r~P~------------------------------ 253 (423)
T KOG0313|consen 206 TRFCSGSWDTMLKIWSVETDEEDEL-ESSSNR-RRKKQKREKEGGTRTPL------------------------------ 253 (423)
T ss_pred CeEEeecccceeeecccCCCccccc-cccchh-hhhhhhhhhcccccCce------------------------------
Confidence 9999999999999999432211000 000000 0000000 00000000
Q ss_pred ceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCC
Q 001279 341 EVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPS 420 (1108)
Q Consensus 341 ~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~ 420 (1108)
T Consensus 254 -------------------------------------------------------------------------------- 253 (423)
T KOG0313|consen 254 -------------------------------------------------------------------------------- 253 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEE
Q 001279 421 VCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLA 500 (1108)
Q Consensus 421 ~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llat 500 (1108)
...+||...++.+.+++ ...+.+
T Consensus 254 --------------------------------------------------------vtl~GHt~~Vs~V~w~d-~~v~yS 276 (423)
T KOG0313|consen 254 --------------------------------------------------------VTLEGHTEPVSSVVWSD-ATVIYS 276 (423)
T ss_pred --------------------------------------------------------EEecccccceeeEEEcC-CCceEe
Confidence 01223333333333444 558899
Q ss_pred EecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccC
Q 001279 501 GYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLET 580 (1108)
Q Consensus 501 gs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~ 580 (1108)
++.|.+|+.||+.++.+... + --+.++.|++++|...+|++|+.|..++|||.....
T Consensus 277 ~SwDHTIk~WDletg~~~~~-----------~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~----------- 333 (423)
T KOG0313|consen 277 VSWDHTIKVWDLETGGLKST-----------L-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD----------- 333 (423)
T ss_pred ecccceEEEEEeecccceee-----------e-ecCcceeEeecccccceeeecCCCCceeecCCCCCC-----------
Confidence 99999999999998886511 1 123479999999999999999999999999988752
Q ss_pred ccceeecccCCcceEEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEccCce-EEEEeecCCCCCCceEEEEeee
Q 001279 581 KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLS-VLFFTDDISGSSSPIISMTWTE 658 (1108)
Q Consensus 581 ~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg-~~LavGs~dG~V~vwd~~~~~-~~~~~~~~~~h~~~V~~l~fs~ 658 (1108)
|-.....|.+|+.-|.++.|+|.. .+|++|+-|+++++||+++.. .+|. +.+|...|.++.|..
T Consensus 334 -----------gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd---I~~h~DKvl~vdW~~ 399 (423)
T KOG0313|consen 334 -----------GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD---IAGHNDKVLSVDWNE 399 (423)
T ss_pred -----------CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee---eccCCceEEEEeccC
Confidence 223567889999999999999965 678999999999999999887 6764 456999999999992
Q ss_pred cccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 659 FKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 659 ~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
+.++++|+.|.+|+++...
T Consensus 400 -----------------------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 400 -----------------------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -----------------------CceEEeccCcceEEEeccc
Confidence 5689999999999998753
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=5.4e-22 Score=207.01 Aligned_cols=212 Identities=16% Similarity=0.237 Sum_probs=162.7
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEee-CC--CEEEEEeCCCcEEEEEcCCC
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQ-NQ--GFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~-d~--~~L~S~s~d~~I~vWd~~s~ 108 (1108)
+-|+.-|+++... ++++.+|+.||.++||+..+.......+|.++|..+++.- |. ..+++++.|.++++|.++.+
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 3455556666666 7999999999999999999999999999999999888854 32 36999999999999999887
Q ss_pred eee-----eeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc--c-----cccCCC----
Q 001279 109 SLA-----CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL--S-----EKAGFP---- 172 (1108)
Q Consensus 109 ~~~-----~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~--~-----~~~~~~---- 172 (1108)
... ...+|...|-++++.+++..+++|+.|.++.||+...+...-.. .+....+ + .....|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E---~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELE---SSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccc---ccchhhhhhhhhhhcccccCceEEe
Confidence 543 22378999999999999999999999999999994331111000 0000000 0 000111
Q ss_pred CCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCce
Q 001279 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1108)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 252 (1108)
.+|.++|.+|.|.+ ...+++++.|.+|+.||+.++..+...-. .+.+
T Consensus 257 ~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~------------------------------~ksl 303 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT------------------------------NKSL 303 (423)
T ss_pred cccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec------------------------------Ccce
Confidence 34568999999965 44599999999999999999987654322 6778
Q ss_pred eEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 253 SALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 253 tsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+|+.+. |....|++|+.|..|++||..++
T Consensus 304 ~~i~~~-~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 304 NCISYS-PLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred eEeecc-cccceeeecCCCCceeecCCCCC
Confidence 899965 89999999999999999998754
No 67
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.2e-23 Score=215.80 Aligned_cols=200 Identities=12% Similarity=0.147 Sum_probs=159.1
Q ss_pred eeeeCCCCCceEEEEcCCC-CEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001279 29 AVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~-~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~ 106 (1108)
....||..+|.|||=+|.+ ..+|+|+.||.|+|||+...+++ .+..|.+.|+.|++.. ..++++++|.+|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 3447999999999999998 89999999999999999766554 7788999999999998 569999999999999987
Q ss_pred CCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 107 SRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 107 s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
.. .++++...+.++.+.-+.....+++++++ |.|||...+ ...+. +... . +.|.++.|+|
T Consensus 138 ~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~--~Pv~s-mswG--~------------Dti~svkfNp 197 (433)
T KOG0268|consen 138 GP-PLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD--NPVSS-MSWG--A------------DSISSVKFNP 197 (433)
T ss_pred CC-cceeeeccccccccccccccccccccCce--eeecccccC--Cccce-eecC--C------------CceeEEecCC
Confidence 64 66777677778888888788888888765 578998643 22211 2222 1 5699999999
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE
Q 001279 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1108)
Q Consensus 187 ~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1108)
. +...|+++.+|+.|.|||++++.++.-.-- .-.-..+||. |.+-.++
T Consensus 198 v-ETsILas~~sDrsIvLyD~R~~~Pl~KVi~------------------------------~mRTN~Iswn-PeafnF~ 245 (433)
T KOG0268|consen 198 V-ETSILASCASDRSIVLYDLRQASPLKKVIL------------------------------TMRTNTICWN-PEAFNFV 245 (433)
T ss_pred C-cchheeeeccCCceEEEecccCCccceeee------------------------------eccccceecC-cccccee
Confidence 7 455588888999999999999876532211 2234569997 8999999
Q ss_pred EEEccCcEEEEecCCC
Q 001279 267 VGYIDGDILLWNTSTT 282 (1108)
Q Consensus 267 sg~~DG~I~lWd~~~~ 282 (1108)
+|..|..|+.+|+...
T Consensus 246 ~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 246 AANEDHNLYTYDMRNL 261 (433)
T ss_pred eccccccceehhhhhh
Confidence 9999999999998643
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=4.1e-23 Score=209.76 Aligned_cols=279 Identities=16% Similarity=0.174 Sum_probs=207.7
Q ss_pred ccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC
Q 001279 478 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 557 (1108)
Q Consensus 478 ~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d 557 (1108)
+.-|..+...++.|+||++++++|+-||.|.+||..++.++.-.+...+ -.+--+..+|.|++||.|+.+||+|+.|
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---d~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---DNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---cceeecccceEEEeecccHHHhhccCcC
Confidence 4445556667779999999999999999999999999987622222111 1133466799999999999999999999
Q ss_pred ceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEe-ecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCce
Q 001279 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS-LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS 636 (1108)
Q Consensus 558 G~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~ 636 (1108)
|.|+||.+.++ +|+..|. .|...|+|+.||.|+..+.+++-|-+|+|--+.+++
T Consensus 285 GkIKvWri~tG-------------------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 285 GKIKVWRIETG-------------------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred CcEEEEEEecc-------------------------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence 99999999987 4666665 799999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccc
Q 001279 637 VLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKV 716 (1108)
Q Consensus 637 ~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~ 716 (1108)
++ ..+.||++-|....|+ +++..+++++.||+|.||+..+++++.+. +|....
T Consensus 340 ~L---KEfrGHsSyvn~a~ft----------------------~dG~~iisaSsDgtvkvW~~KtteC~~Tf--k~~~~d 392 (508)
T KOG0275|consen 340 CL---KEFRGHSSYVNEATFT----------------------DDGHHIISASSDGTVKVWHGKTTECLSTF--KPLGTD 392 (508)
T ss_pred hH---HHhcCccccccceEEc----------------------CCCCeEEEecCCccEEEecCcchhhhhhc--cCCCCc
Confidence 88 6788999999999999 56888999999999999999999998776 333322
Q ss_pred -eeeEEEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC-eeEE
Q 001279 717 -IAISMEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRL 794 (1108)
Q Consensus 717 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~-~~~v 794 (1108)
.+....++.-+ ..++++|... .+++
T Consensus 393 ~~vnsv~~~PKn-----------------------------------------------------peh~iVCNrsntv~i 419 (508)
T KOG0275|consen 393 YPVNSVILLPKN-----------------------------------------------------PEHFIVCNRSNTVYI 419 (508)
T ss_pred ccceeEEEcCCC-----------------------------------------------------CceEEEEcCCCeEEE
Confidence 22222222100 2267777755 7777
Q ss_pred EecccccccccceeeeecCCC-------cceeeeeeecCCceeEEEEEeecCcEEEeecCCc--cccc---cccccceee
Q 001279 795 YSRKSVIQGNNKTVQKVKHKN-------RCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDL--ELVM---ESSLMSILR 862 (1108)
Q Consensus 795 ~sl~~~~~g~~~~~~k~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l--~~~~---~~~~~~~~~ 862 (1108)
..+..+ +++...-.+ .||.+ |++-|.-|+..||.+..|+.-+= |-.+ |. ...-+.
T Consensus 420 mn~qGQ------vVrsfsSGkREgGdFi~~~lS------pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk-dvIGl~ 486 (508)
T KOG0275|consen 420 MNMQGQ------VVRSFSSGKREGGDFINAILS------PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK-DVIGLT 486 (508)
T ss_pred Eeccce------EEeeeccCCccCCceEEEEec------CCCcEEEEEccCcEEEEEEeecCceeeeeecccc-cccccc
Confidence 766653 222211111 12322 67889999999999999987653 3222 33 334466
Q ss_pred ceecCccccccccC-CCc
Q 001279 863 WNFKANMDKTISAD-NGQ 879 (1108)
Q Consensus 863 ~~~~~~~~~~~~~s-~Gq 879 (1108)
++||.|-+.+ +| ||-
T Consensus 487 HHPHqNllAs--YsEDgl 502 (508)
T KOG0275|consen 487 HHPHQNLLAS--YSEDGL 502 (508)
T ss_pred cCcccchhhh--hcccch
Confidence 7888887653 66 774
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-21 Score=190.79 Aligned_cols=202 Identities=10% Similarity=0.114 Sum_probs=174.0
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEec-CCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~ 108 (1108)
..-++.+.|.++.|+-+|.|+.+++.|.+|++|+. .+..+..-.+|...|..++.+.|...+++++.|..|.+||+.+|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 34577889999999999999999999999999998 45555678889999999999999999999999999999999999
Q ss_pred eeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC
Q 001279 109 SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1108)
Q Consensus 109 ~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1108)
+....+ .|.+.|+++.|+.....+++|+-|.++++||-....-+.+|. +.... +.|.+|..
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi---ldea~------------D~V~Si~v--- 153 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI---LDEAK------------DGVSSIDV--- 153 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch---hhhhc------------CceeEEEe---
Confidence 999988 688999999999999999999999999999987655555543 33222 67888888
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE
Q 001279 188 SSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1108)
Q Consensus 188 ~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1108)
.+..++.|+.||+++.||++.+.... ++ ..+|+|+++ ++||++.+
T Consensus 154 -~~heIvaGS~DGtvRtydiR~G~l~sDy~--------------------------------g~pit~vs~-s~d~nc~L 199 (307)
T KOG0316|consen 154 -AEHEIVAGSVDGTVRTYDIRKGTLSSDYF--------------------------------GHPITSVSF-SKDGNCSL 199 (307)
T ss_pred -cccEEEeeccCCcEEEEEeecceeehhhc--------------------------------CCcceeEEe-cCCCCEEE
Confidence 34459999999999999999987642 44 347999996 59999999
Q ss_pred EEEccCcEEEEecCCCC
Q 001279 267 VGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 267 sg~~DG~I~lWd~~~~~ 283 (1108)
.++.|++|++-|-.+++
T Consensus 200 a~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETGK 216 (307)
T ss_pred EeeccceeeecccchhH
Confidence 99999999999987764
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=6.8e-22 Score=213.00 Aligned_cols=185 Identities=14% Similarity=0.199 Sum_probs=137.1
Q ss_pred CCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe----eeeeec--CCCCeeEEEEecCCCEEEEEeCC
Q 001279 65 DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS----LACCLK--WESNITAFSVISGSHFMYIGDEN 138 (1108)
Q Consensus 65 ~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~----~~~~~~--~~~~Itsl~~~~~~~~l~vg~~d 138 (1108)
+....+.+.+|+..|++|++.|.|-+|+|++-|.+|++||+.... ....+. ....|.++.|++.+..+++.+..
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 333445666788899999999999999999999999999997542 222232 22579999999999999999888
Q ss_pred CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeC
Q 001279 139 GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGG 217 (1108)
Q Consensus 139 g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~ 217 (1108)
...+|+|.|. -.+. -.+.++.....+....+|...++|.+|||...+. +++++.||++||||+...+- ..++.
T Consensus 236 aqakl~DRdG--~~~~---e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~-FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 236 AQAKLLDRDG--FEIV---EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEE-FLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred cceeEEccCC--ceee---eeeccchhhhhhhccCCceeeeeccccccCcccc-eEEecCCCcEEEEecCCchhheeEEe
Confidence 8888888663 1222 1234443334444556667889999999985454 99999999999999877542 33333
Q ss_pred CCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 218 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
++.... .+-.++++.|. +||..|++|+.||+|.+|+..
T Consensus 310 ~k~~~g------------------------~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 310 TKPAGG------------------------KRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKG 347 (641)
T ss_pred eccCCC------------------------cccCceeeecC-CCcchhhhcccCCceeeeecC
Confidence 311111 15678999986 999999999999999999974
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.8e-21 Score=189.16 Aligned_cols=271 Identities=14% Similarity=0.164 Sum_probs=200.6
Q ss_pred CCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEE
Q 001279 65 DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSV 143 (1108)
Q Consensus 65 ~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~v 143 (1108)
++.+...+..|+++|..+.|.-+|.|.++++.|.+|++||.-.+.+++.+ .|..+|..++.+.++..+++|+.|..|.+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 34455567789999999999999999999999999999999999999998 67789999999999999999999999999
Q ss_pred EEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccc
Q 001279 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQL 223 (1108)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~ 223 (1108)
||+.+ |+..+ ++.+|. +.|..|.|
T Consensus 86 wDV~T--Gkv~R---r~rgH~------------aqVNtV~f--------------------------------------- 109 (307)
T KOG0316|consen 86 WDVNT--GKVDR---RFRGHL------------AQVNTVRF--------------------------------------- 109 (307)
T ss_pred EEccc--Ceeee---eccccc------------ceeeEEEe---------------------------------------
Confidence 99875 45543 244544 44555555
Q ss_pred cccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccc
Q 001279 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1108)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~ 303 (1108)
. .+...+++|+.|.++++||..+.. ..
T Consensus 110 ----------------------------------N-eesSVv~SgsfD~s~r~wDCRS~s---------~e--------- 136 (307)
T KOG0316|consen 110 ----------------------------------N-EESSVVASGSFDSSVRLWDCRSRS---------FE--------- 136 (307)
T ss_pred ----------------------------------c-CcceEEEeccccceeEEEEcccCC---------CC---------
Confidence 2 445677777788888888875431 01
Q ss_pred ccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCC
Q 001279 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1108)
Q Consensus 304 ~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~ 383 (1108)
||-.+ +... |. +..
T Consensus 137 -----PiQil--------dea~----------D~-------V~S------------------------------------ 150 (307)
T KOG0316|consen 137 -----PIQIL--------DEAK----------DG-------VSS------------------------------------ 150 (307)
T ss_pred -----ccchh--------hhhc----------Cc-------eeE------------------------------------
Confidence 11100 0000 00 000
Q ss_pred CCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhcc
Q 001279 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1108)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1108)
.+
T Consensus 151 -------------------i~----------------------------------------------------------- 152 (307)
T KOG0316|consen 151 -------------------ID----------------------------------------------------------- 152 (307)
T ss_pred -------------------EE-----------------------------------------------------------
Confidence 00
Q ss_pred ccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEE
Q 001279 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1108)
Q Consensus 464 ~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~la 543 (1108)
-.+..|++|+-||++|.||+..+.+. .+.-..||+|+.
T Consensus 153 -----------------------------v~~heIvaGS~DGtvRtydiR~G~l~-------------sDy~g~pit~vs 190 (307)
T KOG0316|consen 153 -----------------------------VAEHEIVAGSVDGTVRTYDIRKGTLS-------------SDYFGHPITSVS 190 (307)
T ss_pred -----------------------------ecccEEEeeccCCcEEEEEeecceee-------------hhhcCCcceeEE
Confidence 00116899999999999999988855 223334999999
Q ss_pred EEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcC--EEEEEEcCCCCEEEEE
Q 001279 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP--VRALQFTSSGAKLAVG 621 (1108)
Q Consensus 544 fs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~--Vtslafspdg~~LavG 621 (1108)
|++|++.+..++.|+++++.|-.+. .++..+++|... =...+++....++++|
T Consensus 191 ~s~d~nc~La~~l~stlrLlDk~tG-------------------------klL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 191 FSKDGNCSLASSLDSTLRLLDKETG-------------------------KLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred ecCCCCEEEEeeccceeeecccchh-------------------------HHHHHhcccccceeeeeeeecccceeEEec
Confidence 9999999999999999999987765 245566777554 3455677777899999
Q ss_pred eCCCeEEEEEccCceEEEEeecCCCCCCc-eEEEEeee
Q 001279 622 FECGRVAVLDMNLLSVLFFTDDISGSSSP-IISMTWTE 658 (1108)
Q Consensus 622 s~dG~V~vwd~~~~~~~~~~~~~~~h~~~-V~~l~fs~ 658 (1108)
++||.|.+||+....++.. ++-+... |+++.|.|
T Consensus 246 SEDG~Vy~wdLvd~~~~sk---~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISK---LSVVSTVIVTDLSCHP 280 (307)
T ss_pred cCCceEEEEEeccceeeee---eccCCceeEEeeeccc
Confidence 9999999999999988843 3436666 78888884
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=1e-20 Score=188.77 Aligned_cols=162 Identities=17% Similarity=0.315 Sum_probs=132.5
Q ss_pred EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
+.+.+|+.|++.+.|..+|.+|+||+.|.++.||-..+|+.+-.+ +|.+.|.|+.++.+.++|++|+.|.++++|++..
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 567789999999999999999999999999999999999988887 8999999999999999999999999999999876
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-----CCeEEEEEccCCe--------EEEE
Q 001279 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-----NALVILWDVSEAQ--------IIFV 215 (1108)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-----dg~V~lWdl~~~~--------~~~~ 215 (1108)
|+.... ++.+ .+|..+.|++ .|++++.... .+.|.++|++... ...+
T Consensus 84 --Gk~la~-~k~~---------------~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 84 --GKQLAT-WKTN---------------SPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred --CcEEEE-eecC---------------CeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 454422 3333 6799999987 6774444433 2478889887432 1112
Q ss_pred eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
..+ +..++++.|. |-+++|++|+.||.|..||..++
T Consensus 144 ~t~------------------------------~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 144 PTP------------------------------DSKITSALWG-PLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred cCC------------------------------ccceeeeeec-ccCCEEEEecCCCcEEEEEcccC
Confidence 111 6789999996 99999999999999999999765
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=8.8e-21 Score=188.77 Aligned_cols=265 Identities=15% Similarity=0.237 Sum_probs=200.1
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|...|.+++|+.++..|+.|+.|++++||+++.. .+.. .....+|. +.|..++|+|. ...+|+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~~~-~~~~~gh~------------~svdql~w~~~-~~d~~a 81 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RFRK-ELVYRGHT------------DSVDQLCWDPK-HPDLFA 81 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecch--hhhh-hhcccCCC------------cchhhheeCCC-CCcceE
Confidence 46678999999999999999999999999999864 2221 11222333 78999999998 455699
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcE
Q 001279 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I 274 (1108)
+++.|.+|++||++.+++...... .++=.-++|. |+|.+++.+..|..|
T Consensus 82 tas~dk~ir~wd~r~~k~~~~i~~------------------------------~~eni~i~ws-p~g~~~~~~~kdD~i 130 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCTARIET------------------------------KGENINITWS-PDGEYIAVGNKDDRI 130 (313)
T ss_pred EecCCceEEEEEeccCcEEEEeec------------------------------cCcceEEEEc-CCCCEEEEecCcccE
Confidence 999999999999999987655432 2222346674 999999999999999
Q ss_pred EEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccc
Q 001279 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1108)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1108)
.+.|..+.+.... .. +. .
T Consensus 131 t~id~r~~~~~~~---------------~~------------------~~----~------------------------- 148 (313)
T KOG1407|consen 131 TFIDARTYKIVNE---------------EQ------------------FK----F------------------------- 148 (313)
T ss_pred EEEEecccceeeh---------------hc------------------cc----c-------------------------
Confidence 9998864311000 00 00 0
Q ss_pred cccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCC
Q 001279 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1108)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1108)
.+ .+
T Consensus 149 ---------------e~--------------------------ne----------------------------------- 152 (313)
T KOG1407|consen 149 ---------------EV--------------------------NE----------------------------------- 152 (313)
T ss_pred ---------------ee--------------------------ee-----------------------------------
Confidence 00 00
Q ss_pred CcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001279 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1108)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~ 514 (1108)
+..+.++.+++.-...|+|.|....
T Consensus 153 ------------------------------------------------------~~w~~~nd~Fflt~GlG~v~ILsyp- 177 (313)
T KOG1407|consen 153 ------------------------------------------------------ISWNNSNDLFFLTNGLGCVEILSYP- 177 (313)
T ss_pred ------------------------------------------------------eeecCCCCEEEEecCCceEEEEecc-
Confidence 0111222244444556888887655
Q ss_pred CceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcce
Q 001279 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1108)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 594 (1108)
.++++ .++..|....-||.|+|+|++||+|+.|..|-|||++.- .
T Consensus 178 -sLkpv---------~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-------------------------i 222 (313)
T KOG1407|consen 178 -SLKPV---------QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-------------------------I 222 (313)
T ss_pred -ccccc---------cccccCCcceEEEEECCCCceEeeccccceeeccChhHh-------------------------h
Confidence 33332 246689889999999999999999999999999998875 4
Q ss_pred EEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeee
Q 001279 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 658 (1108)
Q Consensus 595 ~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~ 658 (1108)
|...+..+.-+|+.|.||.||++||+|++|-.|-|=++++|.-+++++ +.++-..++|.|
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~~~t~tVAWHP 282 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CEGPTFTVAWHP 282 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----ccCCceeEEecC
Confidence 778889999999999999999999999999999999999999998776 688899999994
No 74
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=6.9e-21 Score=203.68 Aligned_cols=290 Identities=17% Similarity=0.248 Sum_probs=214.3
Q ss_pred ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee----ee---------------ecCCCCeeEEEEecC
Q 001279 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA----CC---------------LKWESNITAFSVISG 128 (1108)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~----~~---------------~~~~~~Itsl~~~~~ 128 (1108)
+......|..+|.+++++|+..++++++.+++|.=|++.+++.. .. ..|...|.+++++++
T Consensus 134 ~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 134 DFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred cceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 34567789999999999999999999999999999999888632 11 134467999999999
Q ss_pred CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEcc
Q 001279 129 SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1108)
Q Consensus 129 ~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~ 208 (1108)
++||++|..|..|.||+.++. ..+ +.+.+|. +.|.+++|.- ....|++++.|..|++|+++
T Consensus 214 gkylatgg~d~~v~Iw~~~t~--ehv---~~~~ghr------------~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTL--EHV---KVFKGHR------------GAVSSLAFRK--GTSELYSASADRSVKVWSID 274 (479)
T ss_pred CcEEEecCCCceEEEecCccc--chh---hcccccc------------cceeeeeeec--CccceeeeecCCceEEEehh
Confidence 999999999999999998853 222 3367776 8899999954 55569999999999999998
Q ss_pred CCeEE-EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCC
Q 001279 209 EAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKG 287 (1108)
Q Consensus 209 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~ 287 (1108)
....+ .++|| ...|.++. ....++.+.+|+.|.++++|++...
T Consensus 275 ~~s~vetlyGH------------------------------qd~v~~Id-aL~reR~vtVGgrDrT~rlwKi~ee----- 318 (479)
T KOG0299|consen 275 QLSYVETLYGH------------------------------QDGVLGID-ALSRERCVTVGGRDRTVRLWKIPEE----- 318 (479)
T ss_pred HhHHHHHHhCC------------------------------ccceeeec-hhcccceEEeccccceeEEEecccc-----
Confidence 87554 46788 56677766 3356777777789999999998432
Q ss_pred ccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCC
Q 001279 288 QQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITL 367 (1108)
Q Consensus 288 ~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~ 367 (1108)
.+++..++
T Consensus 319 ---------------------------------------sqlifrg~--------------------------------- 326 (479)
T KOG0299|consen 319 ---------------------------------------SQLIFRGG--------------------------------- 326 (479)
T ss_pred ---------------------------------------ceeeeeCC---------------------------------
Confidence 11111111
Q ss_pred CCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccC
Q 001279 368 TGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPF 447 (1108)
Q Consensus 368 ~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~ 447 (1108)
...+.|++++.
T Consensus 327 ------------------------------------------------------------------~~sidcv~~In--- 337 (479)
T KOG0299|consen 327 ------------------------------------------------------------------EGSIDCVAFIN--- 337 (479)
T ss_pred ------------------------------------------------------------------CCCeeeEEEec---
Confidence 11122333321
Q ss_pred CCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeecccc
Q 001279 448 GGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEV 527 (1108)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~ 527 (1108)
..-++||+.||.|.+|++....+...+.+...+
T Consensus 338 -----------------------------------------------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 338 -----------------------------------------------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred -----------------------------------------------ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 115899999999999999877754444443333
Q ss_pred cee-eccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCE
Q 001279 528 QGI-EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV 606 (1108)
Q Consensus 528 ~~~-~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~V 606 (1108)
... ....+..-|++|+..|...++|+|+.+|.|+||.+..+.... .++..+ ...+-|
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i---------------------~~l~~l-s~~GfV 428 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI---------------------NLLYSL-SLVGFV 428 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc---------------------ceeeec-ccccEE
Confidence 321 123444589999999999999999999999999998873321 123333 267889
Q ss_pred EEEEEcCCCCEEEEEe
Q 001279 607 RALQFTSSGAKLAVGF 622 (1108)
Q Consensus 607 tslafspdg~~LavGs 622 (1108)
++|+|+++|+++++|-
T Consensus 429 Nsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 429 NSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEEccCCCEEEEec
Confidence 9999999999888774
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.6e-21 Score=197.72 Aligned_cols=209 Identities=15% Similarity=0.211 Sum_probs=169.0
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc-------------------ceEEeCCCCCCEEEEEEeeCCCE
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-------------------EGLLISPSQLPYKNLEFLQNQGF 90 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-------------------~~~~~~~h~~~V~~l~fs~d~~~ 90 (1108)
....|.+...+.+|+|||.++|+|+.|..|+|+|.+.. .+..+..|..+|.+|.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 33467888899999999999999999999999997521 11245568899999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCee---eeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001279 91 LISITNDNEIQVWSLESRSL---ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1108)
Q Consensus 91 L~S~s~d~~I~vWd~~s~~~---~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1108)
|+|++.|++|+++|+..-.. ...++...+|.+++|+|.|.+|++|.+..+++++++.+.+.-+. ..|.
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs----anPd----- 257 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS----ANPD----- 257 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee----cCcc-----
Confidence 99999999999999976533 33446668999999999999999999999999999875321111 0121
Q ss_pred ccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCC
Q 001279 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1108)
..+.+.|++|.+++ .+.+.++|+.||.|+|||--+++++..++. .+
T Consensus 258 -----~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--------AH------------------- 303 (430)
T KOG0640|consen 258 -----DQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGN--------AH------------------- 303 (430)
T ss_pred -----cccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHh--------hc-------------------
Confidence 22348899999987 688899999999999999888888766543 11
Q ss_pred CCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...+|+++.|. .+|++|++.+.|..+++|.+.++
T Consensus 304 ~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 304 GGSEVCSAVFT-KNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred CCceeeeEEEc-cCCeEEeecCCcceeeeeeecCC
Confidence 15679999975 99999999999999999999876
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=4.5e-21 Score=191.28 Aligned_cols=208 Identities=15% Similarity=0.184 Sum_probs=172.4
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~ 108 (1108)
..-||...++-+.|+.+|.+|.+++.|..+.+|=..+.+.+ ...+|++.|.++....+..+|++++.|+++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 34589999999999999999999999999999987555554 78899999999999999999999999999999999999
Q ss_pred eeeeeecCCCCeeEEEEecCCCEEEEEeCC-----CcEEEEEEecCCCee-eeec-eeecccccccccCCCCCCCCCeEE
Q 001279 109 SLACCLKWESNITAFSVISGSHFMYIGDEN-----GLMSVIKYDADEGKL-FQLP-YNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 109 ~~~~~~~~~~~Itsl~~~~~~~~l~vg~~d-----g~V~vw~~d~~~~~l-~~~~-~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
+.+..+.....|..+.|++++++++....+ +.|.++++......+ ...| ++|+.++ ..++.
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~------------skit~ 152 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD------------SKITS 152 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc------------cceee
Confidence 999999999999999999999988877653 567777765322111 1111 3455444 67999
Q ss_pred EecccCCCCCEEEEEECCCeEEEEEccCCeE-EEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeec
Q 001279 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1108)
+.|.| .++.++.|..||.|.+||+++++. +.. ..| ...|+.+++ +
T Consensus 153 a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h------------------------------~~~Ind~q~-s 199 (327)
T KOG0643|consen 153 ALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEH------------------------------SSKINDLQF-S 199 (327)
T ss_pred eeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhh------------------------------ccccccccc-c
Confidence 99998 477799999999999999999854 322 222 678999995 5
Q ss_pred CCCCEEEEEEccCcEEEEecCCC
Q 001279 260 SSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+|..++++++.|.+-++||..+.
T Consensus 200 ~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 200 RDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred CCcceEEecccCccceeeeccce
Confidence 99999999999999999999765
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=1.2e-21 Score=193.25 Aligned_cols=286 Identities=18% Similarity=0.209 Sum_probs=219.6
Q ss_pred EEeCCCCCCEEEEEEee---CCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEE
Q 001279 70 LLISPSQLPYKNLEFLQ---NQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIK 145 (1108)
Q Consensus 70 ~~~~~h~~~V~~l~fs~---d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~ 145 (1108)
+.-++|..||..|+||| +|-+|+|+|.|+.--+-+-+++.-+.++ .|.+.|.+.+.+.+....+++..|-+-+||+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 46678999999999985 8899999999999989899999888776 8999999999998888999999999999999
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe--EEEEeCCCcccc
Q 001279 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQL 223 (1108)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~--~~~~~~~~~~~~ 223 (1108)
--+. .... .+ .|. .-|.+++|+- +.++|++|+.+..+||||+...+ ...+.+|
T Consensus 88 a~tg--delh---sf-~hk------------hivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~gh----- 142 (334)
T KOG0278|consen 88 AVTG--DELH---SF-EHK------------HIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH----- 142 (334)
T ss_pred hhhh--hhhh---hh-hhh------------heeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCC-----
Confidence 5432 1111 01 121 4489999954 77889999999999999988754 3445566
Q ss_pred cccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccc
Q 001279 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1108)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~ 303 (1108)
.+.|..+.|. ...+.|++...|++|++||..++.. +..|...
T Consensus 143 -------------------------tg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~-----------v~sL~~~- 184 (334)
T KOG0278|consen 143 -------------------------TGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTE-----------VQSLEFN- 184 (334)
T ss_pred -------------------------CCcceeEEEe-ccCceEEeeccCCceEEEEeccCcE-----------EEEEecC-
Confidence 7889999986 6778888889999999999976521 0000000
Q ss_pred ccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCC
Q 001279 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1108)
Q Consensus 304 ~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~ 383 (1108)
T Consensus 185 -------------------------------------------------------------------------------- 184 (334)
T KOG0278|consen 185 -------------------------------------------------------------------------------- 184 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhcc
Q 001279 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1108)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1108)
T Consensus 185 -------------------------------------------------------------------------------- 184 (334)
T KOG0278|consen 185 -------------------------------------------------------------------------------- 184 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEE
Q 001279 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1108)
Q Consensus 464 ~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~la 543 (1108)
..+..+.+++++++|.++. .++|.+||+..-.+...+.+ ...|.+-.
T Consensus 185 --------------------s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~------------P~nV~SAS 231 (334)
T KOG0278|consen 185 --------------------SPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM------------PCNVESAS 231 (334)
T ss_pred --------------------CCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC------------cccccccc
Confidence 0001224556666665554 46799999987664433322 23688889
Q ss_pred EEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEE-EeecCcCEEEEEEcCCCCEEEEEe
Q 001279 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAV-FSLVNSPVRALQFTSSGAKLAVGF 622 (1108)
Q Consensus 544 fs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~h~~~Vtslafspdg~~LavGs 622 (1108)
++|+...++.|+.|+.++.||+.+... +.. .++|.++|+||.|+|+|.+-|+|+
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeE-------------------------i~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEE-------------------------IGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCce-------------------------eeecccCCCCceEEEEECCCCceeeccC
Confidence 999999999999999999999988632 222 378999999999999999999999
Q ss_pred CCCeEEEEEccCce
Q 001279 623 ECGRVAVLDMNLLS 636 (1108)
Q Consensus 623 ~dG~V~vwd~~~~~ 636 (1108)
+||+|+||.+.-+.
T Consensus 287 EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGK 300 (334)
T ss_pred CCceEEEEEecCCC
Confidence 99999999986543
No 78
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.2e-18 Score=190.47 Aligned_cols=160 Identities=16% Similarity=0.317 Sum_probs=126.2
Q ss_pred CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee---cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCC
Q 001279 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~---~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~ 151 (1108)
...+|++|+|+...+.||.+-.+|.|.+||+...-++... .....|.+++|. .+..|++.+.+|+|.-||+-..
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l-- 100 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL-- 100 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC--
Confidence 4578999999999999999999999999999987554433 334689999999 5667888889999999998642
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCC
Q 001279 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1108)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1108)
+.. |.+.... ++|.+++-+| .++.+++|+.||.+..++...+++....-. -
T Consensus 101 k~~---~~~d~~g------------g~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r~l---~--------- 151 (691)
T KOG2048|consen 101 KQK---YNIDSNG------------GAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKRSL---M--------- 151 (691)
T ss_pred cee---EEecCCC------------cceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEeec---c---------
Confidence 222 4444333 7899999999 467799999999877777777776543311 0
Q ss_pred CCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
-..++|.++.|. |++..|++|+.||.|++||...+
T Consensus 152 ---------------rq~sRvLslsw~-~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 152 ---------------RQKSRVLSLSWN-PTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred ---------------cccceEEEEEec-CCccEEEecccCceEEEEEcCCC
Confidence 016789999997 99999999999999999999765
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=206.69 Aligned_cols=285 Identities=15% Similarity=0.202 Sum_probs=211.6
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|.+.+..+.|.++...|++|+.|..|++|+...+...+... +.+.. ++|+++.|.+ ++.+++
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t---LaGs~------------g~it~~d~d~--~~~~~i 235 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST---LAGSL------------GNITSIDFDS--DNKHVI 235 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh---hhccC------------CCcceeeecC--CCceEE
Confidence 577899999999999999999999999999987644333322 22222 7799999966 788899
Q ss_pred EEECCCeEEEEEccCCeEE-EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCc
Q 001279 195 IAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~ 273 (1108)
.++.|+.+++|++...+.. ++.|| ...|+++-+. .....+++|+.|.+
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGH------------------------------tdkVt~ak~~-~~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGH------------------------------TDKVTAAKFK-LSHSRVVSGSADRT 284 (459)
T ss_pred eecCCCceeeeeccchhhhhhhccc------------------------------ccceeeehhh-ccccceeeccccch
Confidence 9999999999999998774 45667 7788998865 44445999999999
Q ss_pred EEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccccc
Q 001279 274 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1108)
Q Consensus 274 I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~ 353 (1108)
|++||+....... . +..+..
T Consensus 285 iK~WDl~k~~C~k--------------------------------t----------~l~~S~------------------ 304 (459)
T KOG0288|consen 285 IKLWDLQKAYCSK--------------------------------T----------VLPGSQ------------------ 304 (459)
T ss_pred hhhhhhhhhheec--------------------------------c----------cccccc------------------
Confidence 9999996431000 0 000000
Q ss_pred ccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCC
Q 001279 354 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 433 (1108)
Q Consensus 354 ~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1108)
+ ..+..
T Consensus 305 -----------------c--------------------------nDI~~------------------------------- 310 (459)
T KOG0288|consen 305 -----------------C--------------------------NDIVC------------------------------- 310 (459)
T ss_pred -----------------c--------------------------cceEe-------------------------------
Confidence 0 00000
Q ss_pred CCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCC
Q 001279 434 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 513 (1108)
Q Consensus 434 ~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~ 513 (1108)
....+++|+.|+.||+||+.
T Consensus 311 ------------------------------------------------------------~~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 311 ------------------------------------------------------------SISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred ------------------------------------------------------------cceeeeecccccceEEEecc
Confidence 01268899999999999998
Q ss_pred CCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcc
Q 001279 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1108)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 593 (1108)
+..+. .....+. .|++|..++++..|.+.+.|.++.+.++.+... ......+||
T Consensus 331 s~~~~-----------~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI--------------~~~~sA~g~ 384 (459)
T KOG0288|consen 331 SADKT-----------RSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI--------------RQTFSAEGF 384 (459)
T ss_pred CCcee-----------eEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE--------------EEEeecccc
Confidence 88765 2233333 899999999999999999999999999987621 111111111
Q ss_pred eEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCC
Q 001279 594 LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSE 673 (1108)
Q Consensus 594 ~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~ 673 (1108)
. .+| -.+.+.|||++.|+|.|+.||.|+||++.++++...... .+....|+++.|++
T Consensus 385 k-----~as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~~aI~s~~W~~--------------- 441 (459)
T KOG0288|consen 385 K-----CAS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSNAAITSLSWNP--------------- 441 (459)
T ss_pred c-----ccc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CCCCcceEEEEEcC---------------
Confidence 1 122 389999999999999999999999999999998865543 33344799999994
Q ss_pred CCCCCCCCccEEEEEcCCccEEEE
Q 001279 674 REVPVNPAEEVIIVLFKDAKISIV 697 (1108)
Q Consensus 674 ~~~~~~p~~~~L~s~s~Dg~v~v~ 697 (1108)
.+..|+++++++.+++|
T Consensus 442 -------sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 442 -------SGSGLLSADKQKAVTLW 458 (459)
T ss_pred -------CCchhhcccCCcceEec
Confidence 46679999999999998
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.3e-20 Score=199.64 Aligned_cols=205 Identities=15% Similarity=0.224 Sum_probs=164.4
Q ss_pred ceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-e--EE--------------e--CCCCCCEEEEEEee
Q 001279 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-G--LL--------------I--SPSQLPYKNLEFLQ 86 (1108)
Q Consensus 26 ~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~--~~--------------~--~~h~~~V~~l~fs~ 86 (1108)
.++..+-.|..+++|++++|+.++..+++.||.|.=|+..... . +. . ..|...|.+++.++
T Consensus 133 ~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 133 SDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 3456667889999999999999999999999999999873221 1 11 1 15667899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc
Q 001279 87 NQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL 165 (1108)
Q Consensus 87 d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~ 165 (1108)
|+.||++++.|+.|.|||.++++.+..+ .|.+.|.+++|--....|++++.|.+|++|+++.. .... .+-+|.
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--s~ve---tlyGHq- 286 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--SYVE---TLYGHQ- 286 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--HHHH---HHhCCc-
Confidence 9999999999999999999999999885 78899999999999999999999999999998842 1111 233444
Q ss_pred ccccCCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCC
Q 001279 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1108)
Q Consensus 166 ~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1108)
+.|.+|.- .+... +++.+ .|.++++|++.......+.++
T Consensus 287 -----------d~v~~Ida--L~reR-~vtVGgrDrT~rlwKi~eesqlifrg~-------------------------- 326 (479)
T KOG0299|consen 287 -----------DGVLGIDA--LSRER-CVTVGGRDRTVRLWKIPEESQLIFRGG-------------------------- 326 (479)
T ss_pred -----------cceeeech--hcccc-eEEeccccceeEEEeccccceeeeeCC--------------------------
Confidence 77888876 32344 55554 999999999976655555655
Q ss_pred CCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 245 HQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 245 ~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.+.+.|+|+. +...+++|+.||.|.+|++...
T Consensus 327 ----~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 327 ----EGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred ----CCCeeeEEEe--cccceeeccCCceEEEeeeccc
Confidence 6789999976 5678999999999999998643
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.2e-20 Score=185.15 Aligned_cols=147 Identities=14% Similarity=0.180 Sum_probs=121.2
Q ss_pred CcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe-CCCeEEEEecCceEEEEEecCCCCCcc
Q 001279 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAKN 573 (1108)
Q Consensus 495 ~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~-d~~~Lasg~~dG~V~lw~l~~~~~~~~ 573 (1108)
++++++++.||+.||||+..+... +.+..|...|.|+.|+. +.+.|++|+.|+.|+.||+..-..
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~-----------~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--- 225 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKF-----------MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--- 225 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCce-----------eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc---
Confidence 448999999999999998866533 23667888999999998 556789999999999999987532
Q ss_pred ccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceE
Q 001279 574 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 652 (1108)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg-~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~ 652 (1108)
++..+.+|.-+|+.|+|||.. .+||+++-|-+++|||...+.-.. .....|+.-|.
T Consensus 226 ---------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--e~~~~HtEFv~ 282 (311)
T KOG0277|consen 226 ---------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--ETVDHHTEFVC 282 (311)
T ss_pred ---------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh--hhhhccceEEe
Confidence 466778999999999999964 789999999999999998554331 23345899999
Q ss_pred EEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 653 ~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
.+.|+.. +..++++.+-|+.++||+.
T Consensus 283 g~Dws~~---------------------~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 283 GLDWSLF---------------------DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccc---------------------cCceeeecccccceeeecc
Confidence 9999954 3568999999999999985
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=7.8e-20 Score=214.12 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=162.3
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc-ceEE-eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
+...+.|..+. ..++++|+.|++|++|+.... .+.. ..+|.+.|.+++|...+..|++++.|.+++|||..++++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 67788888888 789999999999999999554 4445 7899999999999988899999999999999999999999
Q ss_pred eee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 112 ~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
+++ .|.+.|.++.. ...++++|+.|.+|+||+++. +..+.+ +.+|. ++|.+|.. ++
T Consensus 285 ~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n--~~~l~l---~~~h~------------~~V~~v~~----~~ 341 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTN--GACLNL---LRGHT------------GPVNCVQL----DE 341 (537)
T ss_pred EEecCCCceEEEEEc--cCceEeeccCCceEEEEeccC--cceEEE---ecccc------------ccEEEEEe----cC
Confidence 998 58888888766 456778889999999999984 455543 44465 88999999 46
Q ss_pred CEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 191 NRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 191 ~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
..+++|+.||+|+|||+.+++++. +.+| ..+|+++.+. .. ..+++|+
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH------------------------------~~~V~sl~~~-~~-~~~~Sgs 389 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGH------------------------------TGRVYSLIVD-SE-NRLLSGS 389 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeecCC------------------------------cceEEEEEec-Cc-ceEEeee
Confidence 779999999999999999998865 4566 7889999733 22 8999999
Q ss_pred ccCcEEEEecCCC
Q 001279 270 IDGDILLWNTSTT 282 (1108)
Q Consensus 270 ~DG~I~lWd~~~~ 282 (1108)
.|++|++||+.+.
T Consensus 390 ~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 390 LDTTIKVWDLRTK 402 (537)
T ss_pred eccceEeecCCch
Confidence 9999999999754
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.2e-20 Score=217.05 Aligned_cols=296 Identities=14% Similarity=0.154 Sum_probs=197.4
Q ss_pred CCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cC----------CCCeeEEEEec---CCC--EEEEEeC
Q 001279 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KW----------ESNITAFSVIS---GSH--FMYIGDE 137 (1108)
Q Consensus 74 ~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~----------~~~Itsl~~~~---~~~--~l~vg~~ 137 (1108)
+|.+.|.++.||+||.|||+++.|+.|+||.+...+..... .. .+.+..+..+. .++ ..-.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999999999999999999999999998764331111 00 01111111111 000 0111111
Q ss_pred CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeC
Q 001279 138 NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 138 dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~ 217 (1108)
...+.+ |-+.+.. ..+.+..-.+|.+.|..+.|+- ..+||+++.|.+|+||++....++..+.
T Consensus 345 s~~~~~-------------p~~~f~f-~ekP~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 345 SPCVLL-------------PLKAFVF-SEKPFCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred CccccC-------------CCccccc-cccchhhhhccchhheeccccc---CCeeEeccccccEEeecCCCcceeeEEe
Confidence 111000 0000000 0011111234458899999954 4569999999999999999999999998
Q ss_pred CCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCcee
Q 001279 218 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVV 297 (1108)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~ 297 (1108)
| ..-|||+.|+.-|.+++++|+-||.|+||++...+
T Consensus 408 H------------------------------ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-------------- 443 (712)
T KOG0283|consen 408 H------------------------------NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-------------- 443 (712)
T ss_pred c------------------------------CCeeEEEEecccCCCcEeecccccceEEeecCcCe--------------
Confidence 8 77899999987788999999999999999996431
Q ss_pred eeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEe
Q 001279 298 KLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILL 377 (1108)
Q Consensus 298 kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~ 377 (1108)
.+.|....
T Consensus 444 --------------Vv~W~Dl~---------------------------------------------------------- 451 (712)
T KOG0283|consen 444 --------------VVDWNDLR---------------------------------------------------------- 451 (712)
T ss_pred --------------eEeehhhh----------------------------------------------------------
Confidence 01111100
Q ss_pred cCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhH
Q 001279 378 SSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSE 457 (1108)
Q Consensus 378 p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~ 457 (1108)
T Consensus 452 -------------------------------------------------------------------------------- 451 (712)
T KOG0283|consen 452 -------------------------------------------------------------------------------- 451 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCC
Q 001279 458 IATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA 537 (1108)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~ 537 (1108)
..++.++++|+|+..+.|+-+|.++||+.....+..-..+..... ....|.
T Consensus 452 --------------------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~--Kk~~~~- 502 (712)
T KOG0283|consen 452 --------------------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK--KKKQGK- 502 (712)
T ss_pred --------------------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC--ccccCc-
Confidence 011233788999999999999999999999888764443332111 122344
Q ss_pred CeEEEEEEeCCC-eEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeec--CcCEEEEEEcCC
Q 001279 538 PVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV--NSPVRALQFTSS 614 (1108)
Q Consensus 538 ~Vt~lafs~d~~-~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h--~~~Vtslafspd 614 (1108)
.||.+.|.|... .+++.+.|..||||+..... ++..|+++ ...=+.-.|+.|
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-------------------------lv~KfKG~~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-------------------------LVHKFKGFRNTSSQISASFSSD 557 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchh-------------------------hhhhhcccccCCcceeeeEccC
Confidence 899999998544 47778889999999996541 23334442 122355679999
Q ss_pred CCEEEEEeCCCeEEEEEccCce
Q 001279 615 GAKLAVGFECGRVAVLDMNLLS 636 (1108)
Q Consensus 615 g~~LavGs~dG~V~vwd~~~~~ 636 (1108)
|++|++|++|..|+||++....
T Consensus 558 gk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCEEEEeecCceEEEEeCCCCc
Confidence 9999999999999999986554
No 84
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=1.2e-18 Score=204.34 Aligned_cols=293 Identities=15% Similarity=0.107 Sum_probs=194.9
Q ss_pred CccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeecc--ccc--eeeccCCCCCeEEEEEEe-CCCeEEEEecCceEE
Q 001279 487 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDA--EVQ--GIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVY 561 (1108)
Q Consensus 487 ~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~--~~~--~~~l~~h~~~Vt~lafs~-d~~~Lasg~~dG~V~ 561 (1108)
.....++++..+++++.+..+..|+..++... +.+.. ... ...+.+|..+|++++|+| ++++|++|+.||+|+
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v--~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAV--LKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEE--eeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 34456778778899999998899998776522 22211 111 123679999999999999 889999999999999
Q ss_pred EEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEE
Q 001279 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFF 640 (1108)
Q Consensus 562 lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg-~~LavGs~dG~V~vwd~~~~~~~~~ 640 (1108)
||++....... ....++..+.+|...|.+|+|+|++ ++|++|+.|++|+|||+.++..+.
T Consensus 102 IWdi~~~~~~~------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~- 162 (493)
T PTZ00421 102 GWGIPEEGLTQ------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE- 162 (493)
T ss_pred EEecCCCcccc------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE-
Confidence 99997642100 0012456778999999999999985 799999999999999999988763
Q ss_pred eecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccceeeE
Q 001279 641 TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAIS 720 (1108)
Q Consensus 641 ~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~~~~~ 720 (1108)
.+.+|...|.++.|+ |++.+|++++.|+.|.+||..+|+.+.....+.. . ...
T Consensus 163 --~l~~h~~~V~sla~s----------------------pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~--~-~~~ 215 (493)
T PTZ00421 163 --VIKCHSDQITSLEWN----------------------LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS--A-KSQ 215 (493)
T ss_pred --EEcCCCCceEEEEEE----------------------CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC--C-cce
Confidence 456799999999999 5588999999999999999998876643211100 0 000
Q ss_pred EEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEe-----cCeeEEE
Q 001279 721 MEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCC-----EDSVRLY 795 (1108)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-----e~~~~v~ 795 (1108)
. ..|.+. ...+++++ +..+++|
T Consensus 216 ~---------------------------------------------------~~w~~~--~~~ivt~G~s~s~Dr~VklW 242 (493)
T PTZ00421 216 R---------------------------------------------------CLWAKR--KDLIITLGCSKSQQRQIMLW 242 (493)
T ss_pred E---------------------------------------------------EEEcCC--CCeEEEEecCCCCCCeEEEE
Confidence 0 111111 33555543 3489999
Q ss_pred ecccccccccceeeeecCCCcc-eeeeeeecCCceeEEEEEe-ecCcEEEeecCCccccccccccceeeceec-Cccccc
Q 001279 796 SRKSVIQGNNKTVQKVKHKNRC-CWASTIEKDEKVCGLLLLF-QTGAVQIRSLPDLELVMESSLMSILRWNFK-ANMDKT 872 (1108)
Q Consensus 796 sl~~~~~g~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~G~i~i~slp~l~~~~~~~~~~~~~~~~~-~~~~~~ 872 (1108)
.+... ..+++...+...+ .+...|. +.+..|++.. .||.|++|++.+-+++... .|. ....+.
T Consensus 243 Dlr~~----~~p~~~~~~d~~~~~~~~~~d--~d~~~L~lggkgDg~Iriwdl~~~~~~~~~--------~~~s~~~~~g 308 (493)
T PTZ00421 243 DTRKM----ASPYSTVDLDQSSALFIPFFD--EDTNLLYIGSKGEGNIRCFELMNERLTFCS--------SYSSVEPHKG 308 (493)
T ss_pred eCCCC----CCceeEeccCCCCceEEEEEc--CCCCEEEEEEeCCCeEEEEEeeCCceEEEe--------eccCCCCCcc
Confidence 98762 3444444444333 3333333 3344566555 4999999999987654432 222 233455
Q ss_pred cccCCCcEEE-EcCceeEEEEeec
Q 001279 873 ISADNGQITL-ANGSEVAFVNLLA 895 (1108)
Q Consensus 873 ~~~s~Gq~~l-~~~~e~~~~~~~~ 895 (1108)
+|+. =...+ |.-+|++++--+.
T Consensus 309 ~~~~-pk~~~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 309 LCMM-PKWSLDTRKCEIARFYALT 331 (493)
T ss_pred eEec-ccccccccceeeeEEEEec
Confidence 6654 11112 3447777765444
No 85
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=1.2e-18 Score=191.40 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=123.6
Q ss_pred cCCCCcEEEE--EecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe-CCCeEEEEecCceEEEEEecC
Q 001279 491 CHSVDRVYLA--GYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 491 ~s~~~~llat--gs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~-d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
++.+...++. ++..|.|-|++++.+.-.+=-.+..- -....|+.++|.| |...||++++||.|+||.+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-------~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-------FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-------ccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 3444444443 35678999999886652211111111 1234799999999 678899999999999999987
Q ss_pred CCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCC-CCEEEEEeCCCeEEEEEccCceEEEEeecCCC
Q 001279 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1108)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspd-g~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~ 646 (1108)
+.-.-+. ..+-..+..|...|+++.|+|- ...||+++.|-+|++||+.+.+.. ..+.+
T Consensus 660 ~gl~e~~------------------~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~---~~l~g 718 (1012)
T KOG1445|consen 660 NGLPENE------------------MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY---SRLVG 718 (1012)
T ss_pred CCCCccc------------------CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh---heecc
Confidence 6322110 0133567899999999999994 578999999999999999998766 35678
Q ss_pred CCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcc
Q 001279 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1108)
|.+.|.+++|+ |++..+++.++||+|+|+...+++
T Consensus 719 HtdqIf~~AWS----------------------pdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 719 HTDQIFGIAWS----------------------PDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred CcCceeEEEEC----------------------CCCcceeeeecCceEEEeCCCCCC
Confidence 99999999999 568899999999999999987655
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.7e-20 Score=205.76 Aligned_cols=275 Identities=13% Similarity=0.209 Sum_probs=205.2
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC-CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeece
Q 001279 80 KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPY 158 (1108)
Q Consensus 80 ~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~-~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~ 158 (1108)
.-+.|+..+ ++.++.+..|.+|+..++.+...... ...||++.|++++.+|++|..+|.|.|||.......-
T Consensus 181 nlldWss~n--~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~----- 253 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR----- 253 (484)
T ss_pred hHhhcccCC--eEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-----
Confidence 445566432 66666688999999999987665544 7899999999999999999999999999976532111
Q ss_pred eecc-cccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEE-E-EeCCCcccccccccCCCCCCC
Q 001279 159 NISA-DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-F-VGGGKDLQLKDGVVDSPSEGD 235 (1108)
Q Consensus 159 ~i~~-~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 235 (1108)
.+.+ |. ..|-+++|. ...+.+|+.++.|..+|++..+.. . ..+|
T Consensus 254 ~~~~~h~------------~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H----------------- 300 (484)
T KOG0305|consen 254 TLRGSHA------------SRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGH----------------- 300 (484)
T ss_pred cccCCcC------------ceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcc-----------------
Confidence 1333 33 779999994 556999999999999999886532 2 3334
Q ss_pred CCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEe
Q 001279 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHW 315 (1108)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~ 315 (1108)
..+|+.+.|. +|+.++++|+.|+.+.+||.... .+..+++...
T Consensus 301 -------------~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~-----------~p~~~~~~H~------------ 343 (484)
T KOG0305|consen 301 -------------RQEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSP-----------EPKFTFTEHT------------ 343 (484)
T ss_pred -------------cceeeeeEEC-CCCCeeccCCCccceEeccCCCc-----------cccEEEeccc------------
Confidence 8899999995 99999999999999999998322 1111111100
Q ss_pred ecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEc
Q 001279 316 STNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLT 395 (1108)
Q Consensus 316 ~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~ 395 (1108)
..+..+.+.|-
T Consensus 344 -----------------------------------------------------aAVKA~awcP~---------------- 354 (484)
T KOG0305|consen 344 -----------------------------------------------------AAVKALAWCPW---------------- 354 (484)
T ss_pred -----------------------------------------------------eeeeEeeeCCC----------------
Confidence 00111111111
Q ss_pred CCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCccc
Q 001279 396 SPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIK 475 (1108)
Q Consensus 396 ~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1108)
T Consensus 355 -------------------------------------------------------------------------------- 354 (484)
T KOG0305|consen 355 -------------------------------------------------------------------------------- 354 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccCCCccccCCCCcEEEEE--ecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEE
Q 001279 476 WPLSGGVPSPVPITKCHSVDRVYLAG--YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1108)
Q Consensus 476 wp~~gg~~~~~~~~~~s~~~~llatg--s~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Las 553 (1108)
...+||+| +.|++|+|||..++.+. ..-.-...|+.|.|++..+.|++
T Consensus 355 ------------------q~~lLAsGGGs~D~~i~fwn~~~g~~i------------~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 355 ------------------QSGLLATGGGSADRCIKFWNTNTGARI------------DSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred ------------------ccCceEEcCCCcccEEEEEEcCCCcEe------------cccccCCceeeEEEcCCCCEEEE
Confidence 11267776 67999999999988754 12234468999999999987776
Q ss_pred Ee--cCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001279 554 GN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1108)
Q Consensus 554 g~--~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd 631 (1108)
+. .+..|.||++... ..+..+.+|...|..+++||||..+++|+.|.++++|+
T Consensus 405 thG~s~n~i~lw~~ps~-------------------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSM-------------------------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ecCCCCCcEEEEecccc-------------------------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 44 4689999999874 24577899999999999999999999999999999999
Q ss_pred ccCc
Q 001279 632 MNLL 635 (1108)
Q Consensus 632 ~~~~ 635 (1108)
+-+.
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8764
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=7.8e-20 Score=214.13 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=121.2
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccc
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1108)
++++|+.||+|++||+.+..+. ..+.+|...|+++.+... ..+++|+.|++|++|++....
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~cl-----------~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~------- 403 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKCL-----------KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR------- 403 (537)
T ss_pred EEEEEecCceEEEEEhhhceee-----------eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-------
Confidence 6777777777777777766655 457789999999988766 899999999999999998851
Q ss_pred cccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCC-CCCceEEEE
Q 001279 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG-SSSPIISMT 655 (1108)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~-h~~~V~~l~ 655 (1108)
+|+.++.+|..-|+.+.+. +++|++++.||+|++||...+.++. .+.+ |...|..++
T Consensus 404 -----------------~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~---~~~~~~~~~v~~l~ 461 (537)
T KOG0274|consen 404 -----------------KCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEGECLR---TLEGRHVGGVSALA 461 (537)
T ss_pred -----------------hhhhhhcCCcccccccccc--cceeEeccccccEEEeecccCceee---eeccCCcccEEEee
Confidence 3788899999999777664 6689999999999999999999884 4455 678888888
Q ss_pred eeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecC
Q 001279 656 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 707 (1108)
Q Consensus 656 fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~ 707 (1108)
+. ...+++++.||++.+||..+|.++..
T Consensus 462 ~~------------------------~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 462 LG------------------------KEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred cC------------------------cceEEEEecCCeeEEEecccCchhhh
Confidence 76 35699999999999999999887754
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.5e-20 Score=183.74 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=204.9
Q ss_pred EEEEEeeC-CCEEEEEe-------CCCcEEEEEcCCC---eeeeeecCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEe
Q 001279 80 KNLEFLQN-QGFLISIT-------NDNEIQVWSLESR---SLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 80 ~~l~fs~d-~~~L~S~s-------~d~~I~vWd~~s~---~~~~~~~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d 147 (1108)
.+++|||- ..+|+.+. ..|.+.|.++... +...++.....+..++|++.. +.+++++.||++++|+..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46778872 23344333 2678999999633 344566778889999999865 688999999999999954
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCCccccccc
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDG 226 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~ 226 (1108)
.... .+ ..+..|. ..|.++-|++. .+..+++++-|++|++|+..-... .++.||
T Consensus 92 ~~s~-Pi---~~~kEH~------------~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh-------- 146 (311)
T KOG0277|consen 92 MPSK-PI---HKFKEHK------------REVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH-------- 146 (311)
T ss_pred CCCc-ch---hHHHhhh------------hheEEeccccc-cceeEEeeccCCceEeecCCCCcceEeecCC--------
Confidence 3322 22 1244554 67999999997 455588889999999999877654 456666
Q ss_pred ccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccC
Q 001279 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1108)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~ 306 (1108)
..-|..+.|....+..+++++.||++++||+..... ++
T Consensus 147 ----------------------~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----------~~---------- 184 (311)
T KOG0277|consen 147 ----------------------NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----------FM---------- 184 (311)
T ss_pred ----------------------ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----------ee----------
Confidence 677888998766788999999999999999853200 00
Q ss_pred CccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCC
Q 001279 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1108)
Q Consensus 307 ~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~ 386 (1108)
+|
T Consensus 185 --------------------------------------~i---------------------------------------- 186 (311)
T KOG0277|consen 185 --------------------------------------SI---------------------------------------- 186 (311)
T ss_pred --------------------------------------EE----------------------------------------
Confidence 00
Q ss_pred CcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccC
Q 001279 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1108)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1108)
+.|...|.|+.+
T Consensus 187 --------------------------------------------~ah~~Eil~cdw------------------------ 198 (311)
T KOG0277|consen 187 --------------------------------------------EAHNSEILCCDW------------------------ 198 (311)
T ss_pred --------------------------------------------EeccceeEeecc------------------------
Confidence 001111111111
Q ss_pred CCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe
Q 001279 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1108)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~ 546 (1108)
..-+.++++||+.|+.||.||+..-. .++ ..+.+|..+|+.+.|||
T Consensus 199 ------------------------~ky~~~vl~Tg~vd~~vr~wDir~~r-~pl---------~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 199 ------------------------SKYNHNVLATGGVDNLVRGWDIRNLR-TPL---------FELNGHGLAVRKVKFSP 244 (311)
T ss_pred ------------------------cccCCcEEEecCCCceEEEEehhhcc-ccc---------eeecCCceEEEEEecCc
Confidence 11233489999999999999987544 112 23679999999999999
Q ss_pred CC-CeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcC-CCCEEEEEeCC
Q 001279 547 IN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFEC 624 (1108)
Q Consensus 547 d~-~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafsp-dg~~LavGs~d 624 (1108)
.. ..||+++.|-++|||++..... ++.+...|+.=|..+.||+ +..++|..+.|
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds------------------------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDS------------------------AIETVDHHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred chhhHhhhccccceEEecccccchh------------------------hhhhhhccceEEeccccccccCceeeecccc
Confidence 65 5799999999999999986532 3455678999999999998 56799999999
Q ss_pred CeEEEEEc
Q 001279 625 GRVAVLDM 632 (1108)
Q Consensus 625 G~V~vwd~ 632 (1108)
+.+.||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999985
No 89
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-18 Score=200.85 Aligned_cols=547 Identities=18% Similarity=0.204 Sum_probs=320.8
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCC---CEEEEEeCCCcEEEEEcC
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQ---GFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~---~~L~S~s~d~~I~vWd~~ 106 (1108)
.-|....-..-.|++|+++|...+ +..|.||...+.+++ .+..|..+++.+.+.|.. .++++++.||+|++||+.
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 344444445567999999998776 578999999776665 677899999999998854 478899999999999999
Q ss_pred CCeeeeeecCCCCeeEEEEecC----CCEEEEEeCCCcEEEEEEecCCCeeeeecee--ecccccccccCCCCCCCCCeE
Q 001279 107 SRSLACCLKWESNITAFSVISG----SHFMYIGDENGLMSVIKYDADEGKLFQLPYN--ISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 107 s~~~~~~~~~~~~Itsl~~~~~----~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~--i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
.+.++..+.-..++.++.+.|. .-.++++.++-.+ ...-. .++....++ +.... .....+-.. .....
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~--~~~~s--~~~~~q~~~~~~~t~~-~~~~d~~~~-~~~~~ 164 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI--LTTFS--KKLSKQSSRFVLATFD-SAKGDFLKE-HQEPK 164 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeeccccee--eeecc--cccccceeeeEeeecc-ccchhhhhh-hcCCc
Confidence 9999999977777777666432 1123333333221 11000 111100011 11000 000000000 11246
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
+|.+++ .|. +.....+..+.+|++.++. .....+ +.. ..+...+++..+ +|
T Consensus 165 ~I~~~~--~ge-~~~i~~~~~~~~~~v~~~~-~~~~~~-~~~-----------------------~~Htf~~t~~~~-sp 215 (792)
T KOG1963|consen 165 SIVDNN--SGE-FKGIVHMCKIHIYFVPKHT-KHTSSR-DIT-----------------------VHHTFNITCVAL-SP 215 (792)
T ss_pred cEEEcC--Cce-EEEEEEeeeEEEEEecccc-eeeccc-hhh-----------------------hhhcccceeEEe-cc
Confidence 677766 465 4444455556888887765 222222 100 111445888885 59
Q ss_pred CCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeec--ccccccCCCceEEEEeCCCCC
Q 001279 261 SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWST--NKESRSNIDGRLFVYGGDEIG 338 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~--~~s~~~~~~~~llv~gg~~~~ 338 (1108)
+++++++|..||.|++|.--.. .........+||+. ..++.++.+|.++++||.++
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~---------------------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~- 273 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGS---------------------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG- 273 (792)
T ss_pred ccceEEEeccCCcEEEEecccc---------------------ccccccceEEEecccccceeEEecCCceEeecccce-
Confidence 9999999999999999975321 12445667889994 55678999999999999997
Q ss_pred CcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCC
Q 001279 339 SEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKK 418 (1108)
Q Consensus 339 ~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~ 418 (1108)
++.+|...--+ +++--.+.+++.++.++|++. ...+.++++++++.....+........-.
T Consensus 274 ------VLv~Wq~~T~~-----kqfLPRLgs~I~~i~vS~ds~--------~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 274 ------VLVLWQLETGK-----KQFLPRLGSPILHIVVSPDSD--------LYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred ------EEEEEeecCCC-----cccccccCCeeEEEEEcCCCC--------eEEEEecCceEEEEeccchhhhhhccCcc
Confidence 77777543111 123345677999999998854 56677889999988766655444333211
Q ss_pred CCCCC-ccCCccccC---CCCcceEEEEEeccCCCCchhhhhHHHhh-ccccCCCCccCcccccccCC--cccCCCcccc
Q 001279 419 PSVCP-VEFPGVIPI---SDPIMTVAEFMLLPFGGHSSKGLSEIATF-TKLHSSHTQAGHIKWPLSGG--VPSPVPITKC 491 (1108)
Q Consensus 419 ~~~~~-~~~~~~~~~---~~~~it~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wp~~gg--~~~~~~~~~~ 491 (1108)
+..+. ...+..+.. .++......+..-+.. -.|..+... .-++. +....+ +..|- +.-.+..++.
T Consensus 335 ~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~----vQ~ydl~td~~i~~~---~v~~~n-~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH----VQFYDLYTDSTIYKL---QVCDEN-YSDGDVNIQVGITAVAR 406 (792)
T ss_pred CCCccccccccccceeEEEcCCCCceeecCCCce----EEEEeccccceeeeE---EEEeec-ccCCcceeEEeeeeehh
Confidence 11110 111111110 0010111111000000 000000000 00000 000000 01111 1112223355
Q ss_pred CCCCcEEEEE--------ecCCc--EEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeC-CC-eEEEEecCce
Q 001279 492 HSVDRVYLAG--------YHDGS--VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NS-SLAVGNEFGL 559 (1108)
Q Consensus 492 s~~~~llatg--------s~DGt--VriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d-~~-~Lasg~~dG~ 559 (1108)
+-.+++++|+ ..||. +|+|-.....- .+.|++.+. ..|...+.+.+|.+. .. .+++++.||.
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k--t~~L~T~I~----~PH~~~~vat~~~~~~rs~~~vta~~dg~ 480 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK--TFILNTKIN----NPHGNAFVATIFLNPTRSVRCVTASVDGD 480 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc--eeEEEEEEe----cCCCceeEEEEEecCcccceeEEeccCCe
Confidence 5568888887 45554 78998776553 345554433 257666666666553 33 7999999999
Q ss_pred EEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE
Q 001279 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLF 639 (1108)
Q Consensus 560 V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~ 639 (1108)
++||-+....+ ..+...++.|...-..|..++++++|+.||.+||+|.+ ++|.+||..+...+.
T Consensus 481 ~KiW~~~~~~n---------------~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~-~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 481 FKIWVFTDDSN---------------IYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFD-DTITIWDYDTKNELL 544 (792)
T ss_pred EEEEEEecccc---------------cCcCccceEEeeeeccccCcccchhhcCCCcEEEEecC-CEEEEecCCChhhhh
Confidence 99999976532 12235567777766679999999999999998888875 569999999953332
Q ss_pred EeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceec
Q 001279 640 FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1108)
Q Consensus 640 ~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~ 706 (1108)
. ....-..++..+.|..... ....++...-.++.+|+.-++.++-
T Consensus 545 ~--~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 545 C--TEGSRNWPIAELLFTAQTQ--------------------NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred c--cccccccchHhHhhhcccc--------------------cccceeeccCceEehHhhhhhheec
Confidence 1 1112344555666653211 2335666777889999987766664
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=4.7e-21 Score=202.00 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=158.5
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc--e-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--G-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~--~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
-|-+.+..+.|-++...||+|+.|..|++|+..+.. . -.+.+..++|+.+.|.+++.++++.+.|+.+++||+.+.+
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh
Confidence 456678889999999999999999999999986554 2 2566677899999999999999999999999999999999
Q ss_pred eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 110 LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 110 ~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
+.+++ .|...|+++.|......+++|+.|.+|+.|++.. ....+. .+++. .+..|...+
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k--~~C~kt--~l~~S--------------~cnDI~~~~-- 312 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK--AYCSKT--VLPGS--------------QCNDIVCSI-- 312 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhh--hheecc--ccccc--------------cccceEecc--
Confidence 88887 7999999999998888899999999999999875 222221 12221 233333322
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
..+++|-.|+.|++||+.+......... .+.|+++. .+++|..|.+.
T Consensus 313 --~~~~SgH~DkkvRfwD~Rs~~~~~sv~~------------------------------gg~vtSl~-ls~~g~~lLss 359 (459)
T KOG0288|consen 313 --SDVISGHFDKKVRFWDIRSADKTRSVPL------------------------------GGRVTSLD-LSMDGLELLSS 359 (459)
T ss_pred --eeeeecccccceEEEeccCCceeeEeec------------------------------CcceeeEe-eccCCeEEeee
Confidence 2388899999999999998876554322 56899999 46999999999
Q ss_pred EccCcEEEEecCCC
Q 001279 269 YIDGDILLWNTSTT 282 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1108)
+.|.++.+.|+.+.
T Consensus 360 sRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTK 373 (459)
T ss_pred cCCCceeeeecccc
Confidence 99999999998643
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.9e-19 Score=182.94 Aligned_cols=199 Identities=13% Similarity=0.164 Sum_probs=154.1
Q ss_pred CCCCceEEEEcC-CCCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 34 IPATASILAFDH-IQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 34 ~~~~is~la~sp-~~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
-..+|++|+||| ...+++.|+-||+||+|++... .......|++||-+++|+.||..+++++.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 346799999999 5556779999999999999653 223456799999999999999999999999999999999999
Q ss_pred eeeeecCCCCeeEEEEecCCC--EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC
Q 001279 110 LACCLKWESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1108)
Q Consensus 110 ~~~~~~~~~~Itsl~~~~~~~--~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1108)
....-.|.++|.++.|.+... .|++|+.|.+|+.||......-.. ..+| +.|+++..
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t---~~LP---------------eRvYa~Dv--- 164 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT---LQLP---------------ERVYAADV--- 164 (347)
T ss_pred eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee---eecc---------------ceeeehhc---
Confidence 988889999999999998776 899999999999999764221111 2233 44666544
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE
Q 001279 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1108)
Q Consensus 188 ~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1108)
....++++..+..|.+|+++.+....-. + ...+ .-.+.|++.+ .|.+..+.
T Consensus 165 -~~pm~vVata~r~i~vynL~n~~te~k~-~-~SpL-------------------------k~Q~R~va~f-~d~~~~al 215 (347)
T KOG0647|consen 165 -LYPMAVVATAERHIAVYNLENPPTEFKR-I-ESPL-------------------------KWQTRCVACF-QDKDGFAL 215 (347)
T ss_pred -cCceeEEEecCCcEEEEEcCCCcchhhh-h-cCcc-------------------------cceeeEEEEE-ecCCceEe
Confidence 3345888999999999999876432211 1 0000 4457787767 77887899
Q ss_pred EEccCcEEEEecCCC
Q 001279 268 GYIDGDILLWNTSTT 282 (1108)
Q Consensus 268 g~~DG~I~lWd~~~~ 282 (1108)
|+..|.+.+-.+...
T Consensus 216 GsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDP 230 (347)
T ss_pred eeecceEEEEecCCC
Confidence 999999999888654
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=9.6e-20 Score=214.48 Aligned_cols=176 Identities=16% Similarity=0.236 Sum_probs=134.1
Q ss_pred eeeeeCCCCCceEEEEcCCCCEEEEEE--CCCcEEEEecCCc-------------ceEEeCCCCCCEEEEEEeeCCCEEE
Q 001279 28 IAVHYGIPATASILAFDHIQRLLAIAT--LDGRIKVIGGDGI-------------EGLLISPSQLPYKNLEFLQNQGFLI 92 (1108)
Q Consensus 28 ~~~~~G~~~~is~la~sp~~~~LA~Gs--~dG~I~iw~~~~~-------------~~~~~~~h~~~V~~l~fs~d~~~L~ 92 (1108)
.+.|.+-. |.+++.+|++..+|+|+ .||.++||+.+.. .+.....|.+.|.|+.|++||.+||
T Consensus 8 wv~H~~~~--IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 8 WVNHNEKS--IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred ccccCCee--EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 34444433 89999999999999999 9999999986432 2235566999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCC--cEEEEEEecCCCeeeeeceeecccccccccC
Q 001279 93 SITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG--LMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1108)
Q Consensus 93 S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg--~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1108)
++|+|+.|.||+.... .... +.|+..| .+-=|+.- +.+.+|.
T Consensus 86 sGSDD~~v~iW~~~~~-~~~~-------------------~fgs~g~~~~vE~wk~~----------~~l~~H~------ 129 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEI-GSGT-------------------VFGSTGGAKNVESWKVV----------SILRGHD------ 129 (942)
T ss_pred eccCcceEEEeeeccc-CCcc-------------------cccccccccccceeeEE----------EEEecCC------
Confidence 9999999999997641 0000 1122122 12223311 2355665
Q ss_pred CCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCC
Q 001279 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1108)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1108)
..|..+.|+| ++.+|++++-|++|.|||..+.+.+. +.+| .
T Consensus 130 ------~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H------------------------------~ 171 (942)
T KOG0973|consen 130 ------SDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH------------------------------Q 171 (942)
T ss_pred ------CccceeccCC--CccEEEEecccceEEEEccccceeeeeeecc------------------------------c
Confidence 7799999999 78889999999999999999986654 5666 7
Q ss_pred CceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 250 KEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
..|..+.|. |-|++|++-+.|++|++|+..
T Consensus 172 s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 172 SLVKGVSWD-PIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred ccccceEEC-CccCeeeeecCCceEEEEEcc
Confidence 778889997 999999999999999999964
No 93
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8.9e-20 Score=196.82 Aligned_cols=200 Identities=14% Similarity=0.142 Sum_probs=162.6
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
-.++.|+.++|+|...+=.+-+..-++.||+..+.++. .++.....|.+++|-.||..|+.|...|.|+|+|..++..+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 45678999999998775333344578999999877665 46667889999999999999999999999999998887777
Q ss_pred eee-cCCCCeeEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 112 CCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 112 ~~~-~~~~~Itsl~~~~~~~-~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
..+ .|+.+|..+.|+|+.+ .+++|+.|+.+++|+++.. .. .+.+.+|+ +.|.|..|+|. .
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--~v---~~~l~~ht------------DYVR~g~~~~~-~ 165 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--YV---QAELSGHT------------DYVRCGDISPA-N 165 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--EE---EEEecCCc------------ceeEeeccccC-C
Confidence 766 7889999999998765 6677888899999998853 32 26688887 89999999997 4
Q ss_pred CCEEEEEECCCeEEEEEccCC-eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 190 GNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
+..+++|+.||.|++||.+.. ..+..+.| ..+|.++++. |.|+.|+++
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~~~v~elnh------------------------------g~pVe~vl~l-psgs~iasA 214 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLTSRVVELNH------------------------------GCPVESVLAL-PSGSLIASA 214 (487)
T ss_pred CeEEEecCCCceEEEEEeccCCceeEEecC------------------------------CCceeeEEEc-CCCCEEEEc
Confidence 556999999999999998876 44445555 7789999987 889988887
Q ss_pred EccCcEEEEecCCC
Q 001279 269 YIDGDILLWNTSTT 282 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1108)
+. ..+++||+.++
T Consensus 215 gG-n~vkVWDl~~G 227 (487)
T KOG0310|consen 215 GG-NSVKVWDLTTG 227 (487)
T ss_pred CC-CeEEEEEecCC
Confidence 65 57999998644
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=1.1e-19 Score=213.87 Aligned_cols=325 Identities=16% Similarity=0.199 Sum_probs=215.7
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 117 ESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 117 ~~~Itsl~~~~~~~~l~vg~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
...|.+++++|++..+++|+ .||.+.||+.+.-..+... .. ..+.+....-..+.+.|.|+.|+| +|.+|+
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----~~-~~l~k~l~~m~~h~~sv~CVR~S~--dG~~lA 85 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----KN-ENLPKHLCTMDDHDGSVNCVRFSP--DGSYLA 85 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhh----hh-cccchhheeeccccCceeEEEECC--CCCeEe
Confidence 35699999999999999999 8999999997641111000 00 001111111233448999999988 899999
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcE
Q 001279 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I 274 (1108)
+|+.|+.|.||.....-....++-+..+. ....-.....-..++..|..++|. |++.+|++++.|++|
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~-----------~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAK-----------NVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSV 153 (942)
T ss_pred eccCcceEEEeeecccCCccccccccccc-----------ccceeeEEEEEecCCCccceeccC-CCccEEEEecccceE
Confidence 99999999999987411111111000000 000000011112248899999996 999999999999999
Q ss_pred EEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccc
Q 001279 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1108)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1108)
.+||..+.+.. ++++
T Consensus 154 iiwn~~tF~~~----------------------------------------------------------~vl~------- 168 (942)
T KOG0973|consen 154 IIWNAKTFELL----------------------------------------------------------KVLR------- 168 (942)
T ss_pred EEEccccceee----------------------------------------------------------eeee-------
Confidence 99998643100 0110
Q ss_pred cccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCC
Q 001279 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1108)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1108)
T Consensus 169 -------------------------------------------------------------------------------- 168 (942)
T KOG0973|consen 169 -------------------------------------------------------------------------------- 168 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001279 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1108)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~ 514 (1108)
||...+--+.+.|-|+++|+-+.|++|+||+...
T Consensus 169 ----------------------------------------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 169 ----------------------------------------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred ----------------------------------------------cccccccceEECCccCeeeeecCCceEEEEEccc
Confidence 0000000114567788999999999999999776
Q ss_pred CceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC----ceEEEEEecCCCCCccccccccCccceeecccC
Q 001279 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF----GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1108)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d----G~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1108)
..+..... .+..+. .-..-+..+.|||||.+|++...- -++.|.+-
T Consensus 203 w~i~k~It--~pf~~~---~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR------------------------- 252 (942)
T KOG0973|consen 203 WGIEKSIT--KPFEES---PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER------------------------- 252 (942)
T ss_pred ceeeEeec--cchhhC---CCcceeeecccCCCcCeecchhhccCCcceeEEEec-------------------------
Confidence 55442211 111111 122358899999999999987642 22333322
Q ss_pred CcceEEEEEeecCcCEEEEEEcCC-----CC------------EEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEE
Q 001279 591 KISLCRAVFSLVNSPVRALQFTSS-----GA------------KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIIS 653 (1108)
Q Consensus 591 ~g~~~~~~~~~h~~~Vtslafspd-----g~------------~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~ 653 (1108)
+++.+-..|.+|.+++++++|+|. .+ .+|+|+.|++|.||....++.++..+.+ ....|..
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~D 330 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVD 330 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh--hcCceee
Confidence 334455778899999999999983 12 7899999999999999988888655543 4568999
Q ss_pred EEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC---ccee
Q 001279 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS---ENMI 705 (1108)
Q Consensus 654 l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~---g~~l 705 (1108)
+.|+ |+|..|++++.||+|.++..+- |++|
T Consensus 331 msWs----------------------pdG~~LfacS~DGtV~~i~Fee~ElG~~l 363 (942)
T KOG0973|consen 331 MSWS----------------------PDGFSLFACSLDGTVALIHFEEKELGVAL 363 (942)
T ss_pred eeEc----------------------CCCCeEEEEecCCeEEEEEcchHHhCccc
Confidence 9999 6688899999999999999653 5554
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=9.5e-20 Score=184.90 Aligned_cols=169 Identities=17% Similarity=0.348 Sum_probs=134.1
Q ss_pred ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC------------C------eee-eeecCCCCeeEEEEecC
Q 001279 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES------------R------SLA-CCLKWESNITAFSVISG 128 (1108)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s------------~------~~~-~~~~~~~~Itsl~~~~~ 128 (1108)
|...+..|.+++++-+|++||.++++++.|-.|++.|++. + -++ +.+.|..+|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4456778999999999999999999999999999999961 1 122 23367889999999999
Q ss_pred CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEcc
Q 001279 129 SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1108)
Q Consensus 129 ~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~ 208 (1108)
...|++|+.|++|+++|+.... .+..+++-.+. .+|.++.||| .|.+|++|...-++++||+.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~s---aKrA~K~~qd~------------~~vrsiSfHP--sGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTS---AKRAFKVFQDT------------EPVRSISFHP--SGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred hheEEeccCCCeEEEEecccHH---HHHHHHHhhcc------------ceeeeEeecC--CCceEEEecCCCceeEEecc
Confidence 9999999999999999987421 11112222221 6799999999 58889999999999999999
Q ss_pred CCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 209 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
+.++...-.. +..+...|+++-+. +.|+..++|+.||.|++||--
T Consensus 247 T~QcfvsanP--------------------------d~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 247 TYQCFVSANP--------------------------DDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred ceeEeeecCc--------------------------ccccccceeEEEec-CCccEEEEeccCCcEEeeccc
Confidence 9876432111 11237889999974 999999999999999999964
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=5.2e-19 Score=187.57 Aligned_cols=284 Identities=16% Similarity=0.205 Sum_probs=221.4
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 156 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~ 156 (1108)
.++.+...+....+++++.|.++.++|..+.+.+..+ +|...|+.+.++++...+++++.|-.|+||..........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~-- 298 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS-- 298 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--
Confidence 6888888887788999999999999999999998888 7889999999999999999999999999999764332211
Q ss_pred ceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCC
Q 001279 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1108)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1108)
+..|+ .+|+.+..|| .|.+|++++.||+..+.|++++..+....+.
T Consensus 299 ---~~~h~------------~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~----------------- 344 (506)
T KOG0289|consen 299 ---SRPHE------------EPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDE----------------- 344 (506)
T ss_pred ---ccccc------------ccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeec-----------------
Confidence 33343 8899999999 5888999999999999999999877654330
Q ss_pred CcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEee
Q 001279 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWS 316 (1108)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~ 316 (1108)
...-.++++.|+ |||-.+.+|..||.|++||++++.. +.
T Consensus 345 ----------~s~v~~ts~~fH-pDgLifgtgt~d~~vkiwdlks~~~-----------~a------------------- 383 (506)
T KOG0289|consen 345 ----------TSDVEYTSAAFH-PDGLIFGTGTPDGVVKIWDLKSQTN-----------VA------------------- 383 (506)
T ss_pred ----------cccceeEEeeEc-CCceEEeccCCCceEEEEEcCCccc-----------cc-------------------
Confidence 004468999987 9999999999999999999975410 00
Q ss_pred cccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcC
Q 001279 317 TNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTS 396 (1108)
Q Consensus 317 ~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~ 396 (1108)
T Consensus 384 -------------------------------------------------------------------------------- 383 (506)
T KOG0289|consen 384 -------------------------------------------------------------------------------- 383 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccc
Q 001279 397 PGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKW 476 (1108)
Q Consensus 397 ~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 476 (1108)
T Consensus 384 -------------------------------------------------------------------------------- 383 (506)
T KOG0289|consen 384 -------------------------------------------------------------------------------- 383 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEec
Q 001279 477 PLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE 556 (1108)
Q Consensus 477 p~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~ 556 (1108)
-.+||.+++..+.|+.+|.+++++.+|+.|++||+..-..-..+.+ ....+|.+++|+..|.+|+.++.
T Consensus 384 -~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l----------~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 384 -KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL----------DEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred -cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec----------cccccceeEEEcCCCCeEEeecc
Confidence 0011222233336777888999999999999999986553222211 12236999999999999999976
Q ss_pred CceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001279 557 FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1108)
Q Consensus 557 dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~ 632 (1108)
| |+||.+... ...|.++..+..|.+..+++.|....+++++|+.|..++++-+
T Consensus 453 ~--l~Vy~~~k~---------------------~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 453 D--LQVYICKKK---------------------TKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred e--eEEEEEecc---------------------cccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 5 555555543 1234567778889999999999999999999999999888754
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.2e-18 Score=178.20 Aligned_cols=195 Identities=13% Similarity=0.143 Sum_probs=160.6
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
...|+.+.|+|....|.+++-||.+++|+.+..+......|+.|+.+++|.++ ...++++.||.|+.+|+.++......
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec
Confidence 45699999999999999999999999999999999999999999999999986 68999999999999999999998888
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|...|.|+...+....+++|+.|++|++||.... .. ....+ ....|.++.- .+++|+
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~--~~------~~~~d----------~~kkVy~~~v----~g~~Lv 149 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK--VV------VGTFD----------QGKKVYCMDV----SGNRLV 149 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEecccc--cc------ccccc----------cCceEEEEec----cCCEEE
Confidence 99999999999999999999999999999996531 11 11110 0145888877 677899
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcE
Q 001279 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I 274 (1108)
+|+.+..|.+||++.-.......- ..+ .-.+.|++.+ |++.-.++++.||.+
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~re--S~l-------------------------kyqtR~v~~~-pn~eGy~~sSieGRV 201 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRE--SSL-------------------------KYQTRCVALV-PNGEGYVVSSIEGRV 201 (323)
T ss_pred EeecCceEEEEEcccccchhhhcc--ccc-------------------------eeEEEEEEEe-cCCCceEEEeecceE
Confidence 999999999999988654321110 000 3467889988 888889999999999
Q ss_pred EEEecC
Q 001279 275 LLWNTS 280 (1108)
Q Consensus 275 ~lWd~~ 280 (1108)
.+=.++
T Consensus 202 avE~~d 207 (323)
T KOG1036|consen 202 AVEYFD 207 (323)
T ss_pred EEEccC
Confidence 875554
No 98
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=207.62 Aligned_cols=249 Identities=16% Similarity=0.166 Sum_probs=186.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC----------------------------c-c---------------
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDG----------------------------I-E--------------- 68 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~----------------------------~-~--------------- 68 (1108)
.|.+.|-++.||+||+|||+|+.||.|+||.+.. . +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6889999999999999999999999999997643 0 0
Q ss_pred --e---------------EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEec-CCC
Q 001279 69 --G---------------LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVIS-GSH 130 (1108)
Q Consensus 69 --~---------------~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~-~~~ 130 (1108)
. ....+|.+.|-.|.||.+ ++|+|.|.|.+|++|++....+++.+.|..-|||++|+| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence 0 012248899999999999 799999999999999999999999999999999999999 568
Q ss_pred EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 131 FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 131 ~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
|+++|+-||.|+||.+.. .++. +...-+ +-|++++|.| +|+..++|+-+|.+++|+....
T Consensus 424 yFiSGSLD~KvRiWsI~d--~~Vv---~W~Dl~-------------~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISD--KKVV---DWNDLR-------------DLITAVCYSP--DGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cEeecccccceEEeecCc--CeeE---eehhhh-------------hhheeEEecc--CCceEEEEEeccEEEEEEccCC
Confidence 999999999999999763 2333 111111 5599999999 7998999999999999999988
Q ss_pred eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccC
Q 001279 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQT 290 (1108)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~ 290 (1108)
+...-..- ..+.+.. ...+.||.+-++.-+-..|++.+.|..|+|+|..+.....
T Consensus 484 k~~~~~~I-~~~~~Kk--------------------~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~---- 538 (712)
T KOG0283|consen 484 KLVSDFHI-RLHNKKK--------------------KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH---- 538 (712)
T ss_pred eEEEeeeE-eeccCcc--------------------ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh----
Confidence 76543211 0000000 0133799999874455578889999999999996553222
Q ss_pred CCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccc
Q 001279 291 GSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 351 (1108)
Q Consensus 291 ~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~ 351 (1108)
++.-... ...++. ..+..||..+|++++|. -+.+|..
T Consensus 539 -------KfKG~~n-~~SQ~~---------Asfs~Dgk~IVs~seDs-------~VYiW~~ 575 (712)
T KOG0283|consen 539 -------KFKGFRN-TSSQIS---------ASFSSDGKHIVSASEDS-------WVYIWKN 575 (712)
T ss_pred -------hhccccc-CCccee---------eeEccCCCEEEEeecCc-------eEEEEeC
Confidence 1110000 011111 22667999999999887 7777764
No 99
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=7.3e-19 Score=206.02 Aligned_cols=205 Identities=15% Similarity=0.148 Sum_probs=157.6
Q ss_pred eeCCCCCceEEEEcC-CCCEEEEEECCCcEEEEecCCc--------ceEEeCCCCCCEEEEEEeeCC-CEEEEEeCCCcE
Q 001279 31 HYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEI 100 (1108)
Q Consensus 31 ~~G~~~~is~la~sp-~~~~LA~Gs~dG~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I 100 (1108)
..||.+.|.+++|+| ++.+||+|+.||.|+||++... ....+.+|...|.+|+|+|++ .+|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 458999999999999 8899999999999999998543 234567899999999999975 689999999999
Q ss_pred EEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 101 QVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 101 ~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
+|||+++++.+..+ .|...|++++|+|++.+|++|+.||.|+|||+.. +... +.+.+|.- ..+
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs--g~~v---~tl~~H~~-----------~~~ 214 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD--GTIV---SSVEAHAS-----------AKS 214 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC--CcEE---EEEecCCC-----------Ccc
Confidence 99999999887776 5788999999999999999999999999999864 3333 23555530 234
Q ss_pred EEEecccCCCCCEEEEEE----CCCeEEEEEccCCe-EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeE
Q 001279 180 VGVLPHPNSSGNRVLIAY----ENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~----~dg~V~lWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vts 254 (1108)
..+.|.|. +..+++++ .|+.|++||++... ....... . ......
T Consensus 215 ~~~~w~~~--~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~---------d--------------------~~~~~~ 263 (493)
T PTZ00421 215 QRCLWAKR--KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL---------D--------------------QSSALF 263 (493)
T ss_pred eEEEEcCC--CCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc---------C--------------------CCCceE
Confidence 56778773 44455443 47899999998643 2222211 0 222333
Q ss_pred EEeecCCCCEEEEEE-ccCcEEEEecCCC
Q 001279 255 LCWASSSGSILAVGY-IDGDILLWNTSTT 282 (1108)
Q Consensus 255 l~w~spdg~~l~sg~-~DG~I~lWd~~~~ 282 (1108)
+.++++++..|++++ .||.|++||+.++
T Consensus 264 ~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 264 IPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 344469999999887 4999999999865
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5e-19 Score=189.28 Aligned_cols=195 Identities=21% Similarity=0.343 Sum_probs=154.0
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce---EEeCCCCCCEEEEEEeeCCC-EEEEEeCCCcEEEEEcCCCee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG---LLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~---~~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~vWd~~s~~~ 110 (1108)
.+.|+++.|+|...+|.||+.||+++||.+++..- ..+.-...||.+.+|.|+|. .+++++.-..+..||++++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 36799999999999999999999999999976532 23333567999999999998 888888899999999999977
Q ss_pred eeeec---C-CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 111 ACCLK---W-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 111 ~~~~~---~-~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
..... + ...+..|.+++++++|++.+..|.|.+.- ...+.+.. .++++ +.|..++|+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh--akT~eli~-s~Kie---------------G~v~~~~fs- 353 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH--AKTKELIT-SFKIE---------------GVVSDFTFS- 353 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh--hhhhhhhh-eeeec---------------cEEeeEEEe-
Confidence 65442 2 24688999999999999999999776644 33344443 25565 669999996
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCce--eEEEeecCCCCE
Q 001279 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI--SALCWASSSGSI 264 (1108)
Q Consensus 187 ~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--tsl~w~spdg~~ 264 (1108)
.+++.|++.+.+|.|.+||+....++..+.- ++.| +++| .+++|++
T Consensus 354 -Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D------------------------------~G~v~gts~~-~S~ng~y 401 (514)
T KOG2055|consen 354 -SDSKELLASGGTGEVYVWNLRQNSCLHRFVD------------------------------DGSVHGTSLC-ISLNGSY 401 (514)
T ss_pred -cCCcEEEEEcCCceEEEEecCCcceEEEEee------------------------------cCccceeeee-ecCCCce
Confidence 4889999999999999999999977765532 2222 4566 4588889
Q ss_pred EEEEEccCcEEEEecC
Q 001279 265 LAVGYIDGDILLWNTS 280 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~ 280 (1108)
|++|+..|.|.+||..
T Consensus 402 lA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 402 LATGSDSGIVNIYDGN 417 (514)
T ss_pred EEeccCcceEEEeccc
Confidence 9999888888888864
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2e-19 Score=199.42 Aligned_cols=212 Identities=15% Similarity=0.209 Sum_probs=164.5
Q ss_pred eCCCCCce---EEEEc-CCCCEEEEEECCCcEEEEecCCcc-------eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcE
Q 001279 32 YGIPATAS---ILAFD-HIQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1108)
Q Consensus 32 ~G~~~~is---~la~s-p~~~~LA~Gs~dG~I~iw~~~~~~-------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I 100 (1108)
+.+-..+. ++..| |.+++|.+|++||.|++|+.+... ...+..|..+|..+....++.-|+|+|.|-+|
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 33344455 56666 567789999999999999984322 23556699999999999999999999999999
Q ss_pred EEEEcCCCe--eeeee-cCCCCeeEEEE-ecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001279 101 QVWSLESRS--LACCL-KWESNITAFSV-ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1108)
Q Consensus 101 ~vWd~~s~~--~~~~~-~~~~~Itsl~~-~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1108)
++|+...+. +...+ .|..-|.|+++ .++...+|+|+-|+.|++|++.....++...--.++... ...++.
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s------l~sG~k 171 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS------LGSGPK 171 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc------CCCCCc
Confidence 999998874 33344 68899999999 778889999999999999999864333321100111111 112445
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCC-eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEE
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1108)
.+|++++.+| .|..++.|+..+.+++||.++. ++..+.|| ...|..+
T Consensus 172 ~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGH------------------------------TdNVr~l 219 (735)
T KOG0308|consen 172 DSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH------------------------------TDNVRVL 219 (735)
T ss_pred cceeeeecCC--cceEEEecCcccceEEeccccccceeeeecc------------------------------ccceEEE
Confidence 7899999987 5788999999999999999887 56778888 6778888
Q ss_pred EeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 256 CWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 256 ~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
. .++||..++++++||+|++||+...
T Consensus 220 l-~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 220 L-VNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred E-EcCCCCeEeecCCCceEEeeecccc
Confidence 8 4599999999999999999999754
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=178.07 Aligned_cols=170 Identities=14% Similarity=0.225 Sum_probs=114.8
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee--eee---cCCCCeeEEEEecCCCEEEEEeCC-CcEEEE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA--CCL---KWESNITAFSVISGSHFMYIGDEN-GLMSVI 144 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~--~~~---~~~~~Itsl~~~~~~~~l~vg~~d-g~V~vw 144 (1108)
.+.+|...|++++|+.||.+|++++.|+.|++|+++.-... ..+ -.-+..|.+.|.|+..-+++.... .+++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 46689999999999999999999999999999998753110 111 112367899999998866666554 467777
Q ss_pred EEec-CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccc
Q 001279 145 KYDA-DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQL 223 (1108)
Q Consensus 145 ~~d~-~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~ 223 (1108)
.++. .+|........+..+. ++..+...+..+-. .+.+.++++++.|..|.||+++ |+.+....-+.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~------f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--- 228 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLE------FERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--- 228 (420)
T ss_pred EeeecccCCCCcccccccccc------cchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccc---
Confidence 7654 2233322111122222 33344455655555 5578889999999999999999 55554432210
Q ss_pred cccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEec
Q 001279 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1108)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1108)
. .-+-++ .||+|++|++++..-.+++|.+
T Consensus 229 -------------------------~-~n~~aa-vSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 229 -------------------------S-SNYDAA-VSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred -------------------------c-ccccee-eCCCCcEEEEecCCCCceEEEE
Confidence 0 111122 4799999999999999999986
No 103
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.9e-18 Score=174.24 Aligned_cols=201 Identities=14% Similarity=0.127 Sum_probs=160.1
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecC-CcceEEeCCCCCCEEEEEEeeCCCEEEEEeC--CCcEEEEEcCCCee
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITN--DNEIQVWSLESRSL 110 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~--d~~I~vWd~~s~~~ 110 (1108)
..+.|.++.|+++|.+|++++.|..|+|||.. +..+..+..+.-.|..++|......++.++. |.+|+..++.+.++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 46789999999999999999999999999984 5555567777788999999988888888887 89999999999999
Q ss_pred eeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 111 ~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
+.-+ +|...|++++++|.+..+++++.|.+|++||+......-. +.. ..-..++|.| +
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-----l~~--------------~~~pi~AfDp--~ 151 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-----LNL--------------SGRPIAAFDP--E 151 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----Eec--------------CCCcceeECC--C
Confidence 9887 7999999999999999999999999999999985322211 111 2234567877 7
Q ss_pred CCEEEEEECCCeEEEEEccCCe--EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1108)
|-.++++...+.|++||++.-. ....+.. ......+.+.+.| ||||++|+.
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i--------------------------~~~~~~ew~~l~F-S~dGK~iLl 204 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSI--------------------------TDNDEAEWTDLEF-SPDGKSILL 204 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEcc--------------------------CCCCccceeeeEE-cCCCCEEEE
Confidence 8888888888899999988642 1111111 0112667888885 699999999
Q ss_pred EEccCcEEEEecCCC
Q 001279 268 GYIDGDILLWNTSTT 282 (1108)
Q Consensus 268 g~~DG~I~lWd~~~~ 282 (1108)
+...+.+++.|.-++
T Consensus 205 sT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 205 STNASFIYLLDAFDG 219 (311)
T ss_pred EeCCCcEEEEEccCC
Confidence 999999998887544
No 104
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=2.6e-18 Score=201.95 Aligned_cols=179 Identities=13% Similarity=0.180 Sum_probs=136.7
Q ss_pred EECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeC-CCEEEEEeCCCcEEEEEcCCCe--------eeeee-cCCCCee
Q 001279 53 ATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLESRS--------LACCL-KWESNIT 121 (1108)
Q Consensus 53 Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWd~~s~~--------~~~~~-~~~~~It 121 (1108)
|+.+|.|++|+..... +..+.+|.++|.+++|+|+ +.+|++++.|++|+|||+.++. .+..+ .|...|+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 5667899999875443 4467789999999999996 7899999999999999997642 12233 6788999
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC
Q 001279 122 AFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1108)
Q Consensus 122 sl~~~~~~~~-l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1108)
+++|+|++.. +++|+.||+|+||++... ... +.+. +. ..|.++.|+| +|.+|++++.|+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg--~~~---~~i~-~~------------~~V~Slswsp--dG~lLat~s~D~ 189 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENE--KRA---FQIN-MP------------KKLSSLKWNI--KGNLLSGTCVGK 189 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCC--cEE---EEEe-cC------------CcEEEEEECC--CCCEEEEEecCC
Confidence 9999998875 578999999999998753 222 2232 22 5699999998 788899999999
Q ss_pred eEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE-e---ecCCCCEEEEEEccC---
Q 001279 201 LVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC-W---ASSSGSILAVGYIDG--- 272 (1108)
Q Consensus 201 ~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~-w---~spdg~~l~sg~~DG--- 272 (1108)
.|+|||+++++.+. +.+| .+.+.+.+ | +++++.+|++++.|+
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH------------------------------~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIH------------------------------DGGKNTKNIWIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred EEEEEECCCCcEEEEEecc------------------------------cCCceeEEEEeeeEcCCCCEEEEEEcCCCCc
Confidence 99999999987654 4455 23222221 2 247889999988775
Q ss_pred -cEEEEecCC
Q 001279 273 -DILLWNTST 281 (1108)
Q Consensus 273 -~I~lWd~~~ 281 (1108)
.|++||+..
T Consensus 240 R~VkLWDlr~ 249 (568)
T PTZ00420 240 REMKLWDLKN 249 (568)
T ss_pred cEEEEEECCC
Confidence 799999864
No 105
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7e-18 Score=173.72 Aligned_cols=285 Identities=14% Similarity=0.156 Sum_probs=207.6
Q ss_pred CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec-CCCCeeEEEEecCCCEEEEEeC--CCcEEEEEEecCCC
Q 001279 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEG 151 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~-~~~~Itsl~~~~~~~~l~vg~~--dg~V~vw~~d~~~~ 151 (1108)
-.+.|.+|.|+.+|.+|++++.|..|++||..++..+.++. ..-.|..+.|....+.+.-++. |.+|+..++.. .
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d--N 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD--N 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec--C
Confidence 46789999999999999999999999999999999988874 4456777788777777766665 77888877654 4
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCC
Q 001279 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1108)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1108)
+.++. +++|. ..|+++..+|. +..+++++.|++|++||++..++.-+...
T Consensus 91 kylRY---F~GH~------------~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------- 140 (311)
T KOG1446|consen 91 KYLRY---FPGHK------------KRVNSLSVSPK--DDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------- 140 (311)
T ss_pred ceEEE---cCCCC------------ceEEEEEecCC--CCeEEecccCCeEEeeEecCCCCceEEec-------------
Confidence 55532 88887 88999999996 35699999999999999997765433311
Q ss_pred CCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEE
Q 001279 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVI 311 (1108)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~ 311 (1108)
..-..++| .|.|-++|++...+.|++||++.-. +.|..
T Consensus 141 ------------------~~~pi~Af-Dp~GLifA~~~~~~~IkLyD~Rs~d-----------------------kgPF~ 178 (311)
T KOG1446|consen 141 ------------------SGRPIAAF-DPEGLIFALANGSELIKLYDLRSFD-----------------------KGPFT 178 (311)
T ss_pred ------------------CCCcceeE-CCCCcEEEEecCCCeEEEEEecccC-----------------------CCCce
Confidence 01112343 5999999999988899999986431 11111
Q ss_pred EEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceE
Q 001279 312 VLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1108)
Q Consensus 312 ~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l 391 (1108)
.+ .+..
T Consensus 179 tf---------------------------------~i~~----------------------------------------- 184 (311)
T KOG1446|consen 179 TF---------------------------------SITD----------------------------------------- 184 (311)
T ss_pred eE---------------------------------ccCC-----------------------------------------
Confidence 11 0000
Q ss_pred EEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCcc
Q 001279 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1108)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1108)
+.
T Consensus 185 ------~~------------------------------------------------------------------------ 186 (311)
T KOG1446|consen 185 ------ND------------------------------------------------------------------------ 186 (311)
T ss_pred ------CC------------------------------------------------------------------------
Confidence 00
Q ss_pred CcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeE
Q 001279 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL 551 (1108)
Q Consensus 472 ~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~L 551 (1108)
+..| .-+.+++||+.++.+..++.+++.|+-.+.+...+........ .+ -..+|+||++++
T Consensus 187 -~~ew----------~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~-------~~-~~a~ftPds~Fv 247 (311)
T KOG1446|consen 187 -EAEW----------TDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN-------LP-LSATFTPDSKFV 247 (311)
T ss_pred -ccce----------eeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC-------cc-eeEEECCCCcEE
Confidence 0000 1226889999999999999999999998886644443322111 12 456899999999
Q ss_pred EEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEee-cCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001279 552 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVL 630 (1108)
Q Consensus 552 asg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vtslafspdg~~LavGs~dG~V~vw 630 (1108)
++|+.||+|.+|++.... .+..+.+ +.++++++.|+|....+|+++. .+.+|
T Consensus 248 l~gs~dg~i~vw~~~tg~-------------------------~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETGK-------------------------KVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred EEecCCCcEEEEEcCCCc-------------------------EeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence 999999999999996651 3455666 7999999999999888888766 45555
Q ss_pred E
Q 001279 631 D 631 (1108)
Q Consensus 631 d 631 (1108)
=
T Consensus 301 ~ 301 (311)
T KOG1446|consen 301 L 301 (311)
T ss_pred e
Confidence 3
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.9e-19 Score=190.81 Aligned_cols=139 Identities=16% Similarity=0.240 Sum_probs=106.9
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccc
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1108)
.++|++.|.++|+||++.+.+.....++ .++.+++.+|-.+.+.+|+.+|.|.+.++...+.+....
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLlti~fp------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v- 256 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLLTITFP------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV- 256 (476)
T ss_pred eEEEecCCceEEEEEeccceeeEEEecC------------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc-
Confidence 7999999999999999999866433322 479999999999999999999999999887654211100
Q ss_pred cccCccceeecccCCcceEEEEEeecCc--CEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEE
Q 001279 577 VLETKSEVHALPEGKISLCRAVFSLVNS--PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1108)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~--~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l 654 (1108)
. .++-+ .++ .-+..+.+|.+ +||||++|-||.+|++|+.||.|+|||+.+..++ +.+....++|+.+
T Consensus 257 -~--~k~~~----~~~-t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i---Rtl~~~kgpVtnL 325 (476)
T KOG0646|consen 257 -N--QKGRH----EEN-TQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI---RTLQTSKGPVTNL 325 (476)
T ss_pred -c--ccccc----ccc-ceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH---HHHhhhcccccee
Confidence 0 00000 000 12456788988 9999999999999999999999999999998887 4444477899999
Q ss_pred Eeeec
Q 001279 655 TWTEF 659 (1108)
Q Consensus 655 ~fs~~ 659 (1108)
.+.+.
T Consensus 326 ~i~~~ 330 (476)
T KOG0646|consen 326 QINPL 330 (476)
T ss_pred Eeecc
Confidence 99754
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.3e-18 Score=175.02 Aligned_cols=179 Identities=17% Similarity=0.264 Sum_probs=137.5
Q ss_pred EEEEEECCCcEEEEecCCcc-------------eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-
Q 001279 49 LLAIATLDGRIKVIGGDGIE-------------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL- 114 (1108)
Q Consensus 49 ~LA~Gs~dG~I~iw~~~~~~-------------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~- 114 (1108)
.+++|+....|.=+.++-.. .+....|.++|++|+.+ +.+++|+|.|.+|+|||.+++..+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 36678877776666552111 22345699999999886 689999999999999999999776555
Q ss_pred cCCCCeeEEEEecCCC--EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 115 KWESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~--~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
.|.+.|+++.|.+... +|++|++||.|.+|+.+. -.+.. .+.+|. +.|+.++.|| .+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~---slK~H~------------~~Vt~lsiHP--S~KL 141 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLK---SLKAHK------------GQVTDLSIHP--SGKL 141 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--eEEee---eecccc------------cccceeEecC--CCce
Confidence 8899999999998765 999999999999999764 23332 255665 6799999999 4887
Q ss_pred EEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC
Q 001279 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1108)
Q Consensus 193 ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG 272 (1108)
-++.+.|+.+++||+-.++......- ...-+.+.|. |.|.+++.+..++
T Consensus 142 ALsVg~D~~lr~WNLV~Gr~a~v~~L------------------------------~~~at~v~w~-~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 142 ALSVGGDQVLRTWNLVRGRVAFVLNL------------------------------KNKATLVSWS-PQGDHFVVSGRNK 190 (362)
T ss_pred EEEEcCCceeeeehhhcCccceeecc------------------------------CCcceeeEEc-CCCCEEEEEeccE
Confidence 88999999999999999887554322 2334458886 9999888877664
Q ss_pred cEEEEecC
Q 001279 273 DILLWNTS 280 (1108)
Q Consensus 273 ~I~lWd~~ 280 (1108)
|-+|.+.
T Consensus 191 -i~i~q~d 197 (362)
T KOG0294|consen 191 -IDIYQLD 197 (362)
T ss_pred -EEEEecc
Confidence 6777664
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-19 Score=201.32 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=123.6
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCC
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~ 569 (1108)
+..+.+.++++|+..+.+|+||..+..-. +.+.+|+.-|.+|-.++||+.+++++.||+|+||++...
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~ki-----------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ- 245 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKI-----------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ- 245 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccce-----------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-
Confidence 45566668999999999999998877744 568899999999999999999999999999999999876
Q ss_pred CCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCC
Q 001279 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1108)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~ 649 (1108)
.|+.++..|...|+++..+|+-.++.+|+.||.|..=|+++....- .+..-..
T Consensus 246 ------------------------rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~t---lick~da 298 (735)
T KOG0308|consen 246 ------------------------RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKST---LICKEDA 298 (735)
T ss_pred ------------------------ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhhe---EeecCCC
Confidence 5889999999999999999999999999999999999998853221 2222445
Q ss_pred ceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
||..+..... .+-+.+++.|++|.-|-.+
T Consensus 299 Pv~~l~~~~~----------------------~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 299 PVLKLHLHEH----------------------DNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred chhhhhhccc----------------------cCCceeeeccccceecCCc
Confidence 6666665522 2235899999999999764
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.83 E-value=9.8e-19 Score=195.60 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=96.9
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE---EeCCCCCCEEE-EEEee-CCCEEEEEeCCCcEEEEE
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKN-LEFLQ-NQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~---~~~~h~~~V~~-l~fs~-d~~~L~S~s~d~~I~vWd 104 (1108)
...||..+|..+++.+. ..++.|++||++++|...+.+.+ ....|.+-|.. ++|.+ ++.+|++++.|.+|.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 44699999999887654 47889999999999998665554 34556676666 88875 667899999999999999
Q ss_pred cCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 105 LESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 105 ~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
..+...+..+ +|+..|+|++...++. |++|+.|.+++||...
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~ 130 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG 130 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch
Confidence 9999988777 7999999999887777 9999999999999876
No 110
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-17 Score=162.70 Aligned_cols=305 Identities=15% Similarity=0.178 Sum_probs=215.6
Q ss_pred ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc------CCCe--------ee--eeecCCCCeeEEEEecCCCE
Q 001279 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL------ESRS--------LA--CCLKWESNITAFSVISGSHF 131 (1108)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~------~s~~--------~~--~~~~~~~~Itsl~~~~~~~~ 131 (1108)
+.+...+....|++++|.|+|+..+.++...+++|--. +.+. ++ ....|.+.|.|.+|+|++.+
T Consensus 24 ~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred EEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 34455566778999999999999999999999887643 2211 11 12246789999999999999
Q ss_pred EEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc--cCCCCCEEEEEEC--CCeEEEEEc
Q 001279 132 MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH--PNSSGNRVLIAYE--NALVILWDV 207 (1108)
Q Consensus 132 l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~--P~~~~~~ll~~~~--dg~V~lWdl 207 (1108)
+++|+.|.+|++..++.+..........+.-|+ +.|..++|- |...+. +++... |..|.+-|-
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhd------------gtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHD------------GTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDC 170 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecC------------CceeeeEEecCCCcCce-EEEecCCCcceEEEeec
Confidence 999999999999998876544432222233333 779999983 443344 554444 445555565
Q ss_pred cCCeE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCC
Q 001279 208 SEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1108)
Q Consensus 208 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~ 286 (1108)
..++. ..+.|| .+.|.++- +=+|-.+++|+.|.+|++||+.-..
T Consensus 171 ~~g~~~~a~sgh------------------------------tghilaly--swn~~m~~sgsqdktirfwdlrv~~--- 215 (350)
T KOG0641|consen 171 GRGQGFHALSGH------------------------------TGHILALY--SWNGAMFASGSQDKTIRFWDLRVNS--- 215 (350)
T ss_pred CCCCcceeecCC------------------------------cccEEEEE--EecCcEEEccCCCceEEEEeeeccc---
Confidence 55544 345566 66677765 2358899999999999999985320
Q ss_pred CccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecC
Q 001279 287 GQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT 366 (1108)
Q Consensus 287 ~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~ 366 (1108)
+.+ ++.-.+..
T Consensus 216 ------~v~-------------------------------------------------~l~~~~~~-------------- 226 (350)
T KOG0641|consen 216 ------CVN-------------------------------------------------TLDNDFHD-------------- 226 (350)
T ss_pred ------eee-------------------------------------------------eccCcccC--------------
Confidence 000 00000000
Q ss_pred CCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEecc
Q 001279 367 LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLP 446 (1108)
Q Consensus 367 ~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~ 446 (1108)
|
T Consensus 227 -------------------------------~------------------------------------------------ 227 (350)
T KOG0641|consen 227 -------------------------------G------------------------------------------------ 227 (350)
T ss_pred -------------------------------C------------------------------------------------
Confidence 0
Q ss_pred CCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccc
Q 001279 447 FGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAE 526 (1108)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~ 526 (1108)
|-....+..++..|.+++|++|+.|.+.-+||+.++.+.
T Consensus 228 ---------------------------------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i-------- 266 (350)
T KOG0641|consen 228 ---------------------------------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI-------- 266 (350)
T ss_pred ---------------------------------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee--------
Confidence 000001112256788889999999999999999999866
Q ss_pred cceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCE
Q 001279 527 VQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV 606 (1108)
Q Consensus 527 ~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~V 606 (1108)
..+..|...|.|+.|+|...||.+++.|..|++-++...-.. . .++.+.-.|...+
T Consensus 267 ---q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~--------------e-------l~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 267 ---QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH--------------E-------LPIMVVAEHKDKA 322 (350)
T ss_pred ---eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh--------------c-------CceEEEEeccCce
Confidence 457789999999999999999999999999999998764210 0 1345567899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001279 607 RALQFTSSGAKLAVGFECGRVAVLDMN 633 (1108)
Q Consensus 607 tslafspdg~~LavGs~dG~V~vwd~~ 633 (1108)
-.+.|.|..--+.+.+.|.++.+|-+.
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCccceeeeccCcceEEEeccC
Confidence 999999998888999999999999764
No 111
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=1.9e-18 Score=203.05 Aligned_cols=207 Identities=13% Similarity=0.117 Sum_probs=157.3
Q ss_pred eeeeCCCCCceEEEEcCC-CCEEEEEECCCcEEEEecCCcc---------eEEeCCCCCCEEEEEEeeCCCE-EEEEeCC
Q 001279 29 AVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIE---------GLLISPSQLPYKNLEFLQNQGF-LISITND 97 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~-~~~LA~Gs~dG~I~iw~~~~~~---------~~~~~~h~~~V~~l~fs~d~~~-L~S~s~d 97 (1108)
....||.+.|.+++|+|+ +.+||+|+.||.|+||++.... ...+.+|...|.+++|+|++.. |++++.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 344689999999999997 7899999999999999985321 1245679999999999998765 5788999
Q ss_pred CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001279 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1108)
Q Consensus 98 ~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1108)
++|+|||+++++....+.+...|++++|++++.+|++++.|+.|+||++.. +.... .+.+|. +
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs--g~~i~---tl~gH~------------g 210 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK--QEIAS---SFHIHD------------G 210 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC--CcEEE---EEeccc------------C
Confidence 999999999998877777778899999999999999999999999999864 34432 355554 3
Q ss_pred Ce-----EEEecccCCCCCEEEEEECCC----eEEEEEccC-CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCC
Q 001279 178 PV-----VGVLPHPNSSGNRVLIAYENA----LVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1108)
Q Consensus 178 ~V-----~~v~f~P~~~~~~ll~~~~dg----~V~lWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1108)
.+ ....|+| ++.+|++++.++ .|+|||++. ++.+....+..
T Consensus 211 ~~~s~~v~~~~fs~--d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--------------------------- 261 (568)
T PTZ00420 211 GKNTKNIWIDGLGG--DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--------------------------- 261 (568)
T ss_pred CceeEEEEeeeEcC--CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---------------------------
Confidence 22 2234445 566788877664 799999985 44444332200
Q ss_pred CCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
..+.+. -.|..++|.++++|..|++|++|++..+
T Consensus 262 ~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 262 ASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CccceE-EeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 012222 2345567999999999999999999754
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.8e-18 Score=175.84 Aligned_cols=330 Identities=14% Similarity=0.195 Sum_probs=234.1
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~ 149 (1108)
...+|...|..++....+..+.+++.|.+-++|.++++.++..+ +|.+.|+++.|++.+.++++++.|++-.||.+...
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~ 222 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN 222 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence 45679999999999888889999999999999999999998887 79999999999999999999999999999997542
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEE--EECCC-eEEEEEccCCeEEEEeCCCccccccc
Q 001279 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI--AYENA-LVILWDVSEAQIIFVGGGKDLQLKDG 226 (1108)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~--~~~dg-~V~lWdl~~~~~~~~~~~~~~~~~~~ 226 (1108)
+.+|...... ..+....+.+- +....... -..|| +|++ .+..+.+|
T Consensus 223 --------~~vP~~~a~~----~hSsEeE~e~s-----De~~~d~d~~~~sD~~tiRv------Pl~~ltgH-------- 271 (481)
T KOG0300|consen 223 --------WEVPSNNAPS----DHSSEEEEEHS-----DEHNRDTDSSEKSDGHTIRV------PLMRLTGH-------- 271 (481)
T ss_pred --------CcCCCCCCCC----CCCchhhhhcc-----cccccccccccccCCceeee------eeeeeecc--------
Confidence 1111110000 00000001000 00110111 01122 2222 12234455
Q ss_pred ccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccC
Q 001279 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1108)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~ 306 (1108)
...|.+..|. ..|+.+++++-|.+..+||+++++...
T Consensus 272 ----------------------~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~-------------------- 308 (481)
T KOG0300|consen 272 ----------------------RAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVN-------------------- 308 (481)
T ss_pred ----------------------ccceEehhhh-cCcceeeeeeccccceeeeeccCceec--------------------
Confidence 6778888898 789999999999999999998652110
Q ss_pred CccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCC
Q 001279 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1108)
Q Consensus 307 ~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~ 386 (1108)
T Consensus 309 -------------------------------------------------------------------------------- 308 (481)
T KOG0300|consen 309 -------------------------------------------------------------------------------- 308 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccC
Q 001279 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1108)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1108)
T Consensus 309 -------------------------------------------------------------------------------- 308 (481)
T KOG0300|consen 309 -------------------------------------------------------------------------------- 308 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe
Q 001279 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1108)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~ 546 (1108)
+++| |..+..-+..+|..++++|.+.|.+.|+||+.. .+... ..+.+|...|+++.|..
T Consensus 309 ----------~LtG-Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-aI~sV---------~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 309 ----------ILTG-HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-AIQSV---------AVFQGHTDTVTSVVFNT 367 (481)
T ss_pred ----------cccC-cchhccccccCCcceEEEEeccCceeEeccchh-hccee---------eeecccccceeEEEEec
Confidence 0111 111111225677788999999999999999883 22211 12679999999999998
Q ss_pred CCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCe
Q 001279 547 INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR 626 (1108)
Q Consensus 547 d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~ 626 (1108)
|. .+++|++|.+|+||++..... ++.++ ....++.-+++|-.+..+|.--++..
T Consensus 368 dd-~vVSgSDDrTvKvWdLrNMRs------------------------plATI-RtdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 368 DD-RVVSGSDDRTVKVWDLRNMRS------------------------PLATI-RTDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred CC-ceeecCCCceEEEeeeccccC------------------------cceee-ecCCccceeEeecCCceEEeccCCce
Confidence 76 567899999999999987532 23333 45778999999999999999999999
Q ss_pred EEEEEccCceEEEEee-cCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 627 VAVLDMNLLSVLFFTD-DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 627 V~vwd~~~~~~~~~~~-~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
|++||+.+.++--..+ .-.+|..-|.+++|... +.-.-|++++-|..+.-|...+
T Consensus 422 vRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee--------------------hp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 422 VRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE--------------------HPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred EEEEecCCCccccCCcccccccceeeeeeecccc--------------------CcccccccccccceeeeeEecc
Confidence 9999999987652111 11369999999999832 2245699999999999998754
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=3.6e-18 Score=173.81 Aligned_cols=273 Identities=16% Similarity=0.240 Sum_probs=193.7
Q ss_pred cCCCCeeEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 115 KWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 115 ~~~~~Itsl~~~~-~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.....|.+++|+| ...+++.|+.||+||+|++... +.+.. -....| .++|.+++| .++|+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~--ka~~~~------------~~PvL~v~W--sddgskV 87 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVP--KAQQSH------------DGPVLDVCW--SDDGSKV 87 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecC-Ccccc--hhhhcc------------CCCeEEEEE--ccCCceE
Confidence 3456899999999 4566779999999999999864 33331 111222 389999999 5589999
Q ss_pred EEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC--CEEEEEEcc
Q 001279 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG--SILAVGYID 271 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg--~~l~sg~~D 271 (1108)
++|+.|+.+++||+.++++..+-.| ..+|.++.|+ +.. ..|++|+-|
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~H------------------------------d~pvkt~~wv-~~~~~~cl~TGSWD 136 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAAH------------------------------DAPVKTCHWV-PGMNYQCLVTGSWD 136 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeeec------------------------------ccceeEEEEe-cCCCcceeEecccc
Confidence 9999999999999999998888766 8899999998 434 489999999
Q ss_pred CcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccc
Q 001279 272 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 351 (1108)
Q Consensus 272 G~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~ 351 (1108)
.+|++||.... .++..+.+.
T Consensus 137 KTlKfWD~R~~-----------~pv~t~~LP------------------------------------------------- 156 (347)
T KOG0647|consen 137 KTLKFWDTRSS-----------NPVATLQLP------------------------------------------------- 156 (347)
T ss_pred cceeecccCCC-----------Ceeeeeecc-------------------------------------------------
Confidence 99999999743 222222221
Q ss_pred ccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCcccc
Q 001279 352 SGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIP 431 (1108)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (1108)
+++|.-|.
T Consensus 157 ----------------------------------------------eRvYa~Dv-------------------------- 164 (347)
T KOG0647|consen 157 ----------------------------------------------ERVYAADV-------------------------- 164 (347)
T ss_pred ----------------------------------------------ceeeehhc--------------------------
Confidence 12221110
Q ss_pred CCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEe
Q 001279 432 ISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWD 511 (1108)
Q Consensus 432 ~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd 511 (1108)
-..+++.+..+..|.+++
T Consensus 165 --------------------------------------------------------------~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 165 --------------------------------------------------------------LYPMAVVATAERHIAVYN 182 (347)
T ss_pred --------------------------------------------------------------cCceeEEEecCCcEEEEE
Confidence 001566677788889999
Q ss_pred CCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCC
Q 001279 512 ATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGK 591 (1108)
Q Consensus 512 ~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1108)
++++.-. ++ ..-..-.-.++||+...|....+.|+-.|.|.|..++......++.
T Consensus 183 L~n~~te--~k-------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt---------------- 237 (347)
T KOG0647|consen 183 LENPPTE--FK-------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT---------------- 237 (347)
T ss_pred cCCCcch--hh-------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee----------------
Confidence 8766522 00 0011223368999999999888999999999999998742222211
Q ss_pred cceEEEEEe---ecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeee
Q 001279 592 ISLCRAVFS---LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 658 (1108)
Q Consensus 592 g~~~~~~~~---~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~ 658 (1108)
|.|...-. ..--+|.+++|+|....|++.+.||++.+||-....-+. ....|..+|++..|+.
T Consensus 238 -FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk---~s~~~~qpItcc~fn~ 303 (347)
T KOG0647|consen 238 -FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK---TSETHPQPITCCSFNR 303 (347)
T ss_pred -EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh---ccCcCCCccceeEecC
Confidence 12222100 012368899999999999999999999999988765552 3455999999999994
No 114
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=4.5e-18 Score=169.62 Aligned_cols=275 Identities=15% Similarity=0.178 Sum_probs=206.8
Q ss_pred eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee---cCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEe
Q 001279 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISG-SHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~---~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d 147 (1108)
..+|...|.+++|.-+|.+|++++.|+++.||+++..+.+... +|.+.|-.++|+|. .+.+++++.|.+|++|+..
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 4468889999999999999999999999999999988666544 67778899999975 4799999999999999987
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccc
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGV 227 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~ 227 (1108)
. ++.... +... ..=.-+.|+| +|.+++.+..|..|...|.++.++......
T Consensus 96 ~--~k~~~~---i~~~-------------~eni~i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~--------- 146 (313)
T KOG1407|consen 96 S--GKCTAR---IETK-------------GENINITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF--------- 146 (313)
T ss_pred c--CcEEEE---eecc-------------CcceEEEEcC--CCCEEEEecCcccEEEEEecccceeehhcc---------
Confidence 5 343321 3221 2335678888 688899999999999999999887655433
Q ss_pred cCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCC
Q 001279 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 307 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ 307 (1108)
...+.-++|. .++.+++.....|+|.+-.....+. +.
T Consensus 147 ---------------------~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsLkp-----------v~---------- 183 (313)
T KOG1407|consen 147 ---------------------KFEVNEISWN-NSNDLFFLTNGLGCVEILSYPSLKP-----------VQ---------- 183 (313)
T ss_pred ---------------------cceeeeeeec-CCCCEEEEecCCceEEEEecccccc-----------cc----------
Confidence 5567778886 5566655555567766655542210 00
Q ss_pred ccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCC
Q 001279 308 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH 387 (1108)
Q Consensus 308 ~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~ 387 (1108)
.+ .
T Consensus 184 ----si-------------------------------------------------------------~------------ 186 (313)
T KOG1407|consen 184 ----SI-------------------------------------------------------------K------------ 186 (313)
T ss_pred ----cc-------------------------------------------------------------c------------
Confidence 00 0
Q ss_pred cceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCC
Q 001279 388 KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS 467 (1108)
Q Consensus 388 ~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1108)
T Consensus 187 -------------------------------------------------------------------------------- 186 (313)
T KOG1407|consen 187 -------------------------------------------------------------------------------- 186 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeC
Q 001279 468 HTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI 547 (1108)
Q Consensus 468 ~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d 547 (1108)
.|+...-++.+.|+|+++|+|+.|..|.+||++.-.|. ..+..+.-+|+.|.||.|
T Consensus 187 -------------AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~-----------R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 187 -------------AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE-----------RCISRLDWPVRTLSFSHD 242 (313)
T ss_pred -------------cCCcceEEEEECCCCceEeeccccceeeccChhHhhhh-----------eeeccccCceEEEEeccC
Confidence 01111123367899999999999999999999866555 345667789999999999
Q ss_pred CCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCC
Q 001279 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1108)
Q Consensus 548 ~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG 625 (1108)
|++||+|+.|.-|-|-...++.. ..-..+.++-..|+|+|...+||-+.+|.
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~--------------------------~~eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDR--------------------------VWEIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cceeeccCccceEEeEecccCCe--------------------------EEEeeccCCceeEEecCCCceeeEEecCC
Confidence 99999999999999998877632 11246788999999999999999887653
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=4.1e-18 Score=174.37 Aligned_cols=158 Identities=15% Similarity=0.222 Sum_probs=129.0
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~ 150 (1108)
+..+-+..|+.|.|+|.+..|+.++-||++++||+....+...+.+..++++++|.+ ...+++|+.||.|+.+|+.+..
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 344456789999999998999999999999999999998888899999999999987 5678999999999999988643
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCC
Q 001279 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1108)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 230 (1108)
... +..|. .+|.||.+.+. .+ .+++|+.|++|++||.+.......+..
T Consensus 87 ~~~------igth~------------~~i~ci~~~~~-~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~------------ 134 (323)
T KOG1036|consen 87 EDQ------IGTHD------------EGIRCIEYSYE-VG-CVISGSWDKTIKFWDPRNKVVVGTFDQ------------ 134 (323)
T ss_pred cee------eccCC------------CceEEEEeecc-CC-eEEEcccCccEEEEecccccccccccc------------
Confidence 222 45555 88999999874 34 499999999999999987443322211
Q ss_pred CCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.+.|.++. -.|..|++|+.|..+.+||+.+.
T Consensus 135 ------------------~kkVy~~~---v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 135 ------------------GKKVYCMD---VSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred ------------------CceEEEEe---ccCCEEEEeecCceEEEEEcccc
Confidence 45777776 45889999999999999999765
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.1e-18 Score=194.29 Aligned_cols=190 Identities=18% Similarity=0.291 Sum_probs=152.9
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCcceEEeCC-CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-c-CC
Q 001279 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-K-WE 117 (1108)
Q Consensus 41 la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~-~~ 117 (1108)
+.++ ....||+|. +..|++|+.....+..+.. +...|+++.|+++|.+|+.+..+|.|.|||+.+.+.+..+ . |.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 5566 567899997 4579999997766553333 3889999999999999999999999999999988887777 3 68
Q ss_pred CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE
Q 001279 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1108)
Q Consensus 118 ~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~ 197 (1108)
..|.+++|. ...+.+|+.+|.|.++++........ .+.+|. ..|+.+.|++ ++.++++|+
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~------------qeVCgLkws~--d~~~lASGg 320 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS----TLQGHR------------QEVCGLKWSP--DGNQLASGG 320 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----hhhccc------------ceeeeeEECC--CCCeeccCC
Confidence 899999998 78899999999999998875322221 144554 7799999977 899999999
Q ss_pred CCCeEEEEEccCCeE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE--ccCcE
Q 001279 198 ENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY--IDGDI 274 (1108)
Q Consensus 198 ~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~--~DG~I 274 (1108)
.|+.+.|||...... ..+.+| ...|.+++|..-....||+|+ .|+.|
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H------------------------------~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEH------------------------------TAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred CccceEeccCCCccccEEEecc------------------------------ceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 999999999966544 556666 889999999633456788874 69999
Q ss_pred EEEecCCC
Q 001279 275 LLWNTSTT 282 (1108)
Q Consensus 275 ~lWd~~~~ 282 (1108)
++||..++
T Consensus 371 ~fwn~~~g 378 (484)
T KOG0305|consen 371 KFWNTNTG 378 (484)
T ss_pred EEEEcCCC
Confidence 99999765
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2e-18 Score=175.62 Aligned_cols=215 Identities=15% Similarity=0.275 Sum_probs=176.3
Q ss_pred CCCccccccceeeeee-CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEE
Q 001279 17 GSLTAADLNLRIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISI 94 (1108)
Q Consensus 17 ~~l~~~~~~~~~~~~~-G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~ 94 (1108)
...+...+..+++..| ||..+|-.++.+..+.+|++++.|.+-+||.+....++ .-.+|.+.|.++.|++.+.+++++
T Consensus 129 ssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTa 208 (481)
T KOG0300|consen 129 SSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTA 208 (481)
T ss_pred eeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEc
Confidence 4555666778888776 89999999999999999999999999999999766554 677899999999999999999999
Q ss_pred eCCCcEEEEEc------CC----------------------------------Ceeeeee-cCCCCeeEEEEecCCCEEE
Q 001279 95 TNDNEIQVWSL------ES----------------------------------RSLACCL-KWESNITAFSVISGSHFMY 133 (1108)
Q Consensus 95 s~d~~I~vWd~------~s----------------------------------~~~~~~~-~~~~~Itsl~~~~~~~~l~ 133 (1108)
+.|++-.||.. .+ +..+..+ +|.+.|.+..|...++.++
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v 288 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV 288 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee
Confidence 99999999972 11 0112222 5667888899999999999
Q ss_pred EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC--e
Q 001279 134 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--Q 211 (1108)
Q Consensus 134 vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~--~ 211 (1108)
+++.|.+-.+||++. +.+++. +.+|+ ...+.++-|| ...++++++.|.+.++||++.. .
T Consensus 289 TaSWDRTAnlwDVEt--ge~v~~---LtGHd------------~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 289 TASWDRTANLWDVET--GEVVNI---LTGHD------------SELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred eeeccccceeeeecc--Cceecc---ccCcc------------hhccccccCC--cceEEEEeccCceeEeccchhhcce
Confidence 999999999999876 566654 77776 6788889999 4667889999999999999865 2
Q ss_pred EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 212 IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+..+.|| ...|+++.|. .+..+++|+.|.+|++||+.+.
T Consensus 350 V~VFQGH------------------------------tdtVTS~vF~--~dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 350 VAVFQGH------------------------------TDTVTSVVFN--TDDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred eeeeccc------------------------------ccceeEEEEe--cCCceeecCCCceEEEeeeccc
Confidence 2334566 7789999964 5677999999999999999754
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.9e-17 Score=159.71 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=119.7
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccC---CCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCcc
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAG---SRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 573 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~---h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~ 573 (1108)
++++|++|.+||+||+.-+.+.. .+. .++.+ .+.+|.+++..|.|++|++|-.|....+|++..+
T Consensus 196 m~~sgsqdktirfwdlrv~~~v~--~l~-----~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~----- 263 (350)
T KOG0641|consen 196 MFASGSQDKTIRFWDLRVNSCVN--TLD-----NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG----- 263 (350)
T ss_pred EEEccCCCceEEEEeeeccceee--ecc-----CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-----
Confidence 89999999999999998776541 111 11111 2368999999999999999999999999999987
Q ss_pred ccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE-EEeecCCCCCCceE
Q 001279 574 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL-FFTDDISGSSSPII 652 (1108)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~-~~~~~~~~h~~~V~ 652 (1108)
..+..|..|+..|.|+.|||...++.+|+-|..|++-|+++.-.. +.......|...+.
T Consensus 264 --------------------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i 323 (350)
T KOG0641|consen 264 --------------------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAI 323 (350)
T ss_pred --------------------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceE
Confidence 357888999999999999999999999999999999999874211 00012245999999
Q ss_pred EEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 653 ~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
.+.|.+. ..-+++.+.|.++.+|-.
T Consensus 324 ~~rwh~~----------------------d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 324 QCRWHPQ----------------------DFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEecCc----------------------cceeeeccCcceEEEecc
Confidence 9999954 444899999999999964
No 119
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.81 E-value=4.5e-18 Score=192.76 Aligned_cols=320 Identities=19% Similarity=0.217 Sum_probs=179.6
Q ss_pred CeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccc--------c---cc-ccCccceeeccc------CCcceEEEEE
Q 001279 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF--------L---FV-LETKSEVHALPE------GKISLCRAVF 599 (1108)
Q Consensus 538 ~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~--------~---~~-~~~~~~~~~~~~------~~g~~~~~~~ 599 (1108)
.|+++.|+++...|++|..+|.|.||+|..+....+. . +. .+..+++.++.. .+||.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 6999999999999999999999999999876433200 0 10 112334444433 4588988888
Q ss_pred eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCC-----CCCCceEEEEeeecccCccccCCCCCCCC
Q 001279 600 SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-----GSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1108)
Q Consensus 600 ~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~-----~h~~~V~~l~fs~~~~~~~~~~~p~~~~~ 674 (1108)
....++|++++.|.-| ++|+|+++|.+.|.|++++.++|+.+.-. .....|++++|+-..+..
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~----------- 150 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG----------- 150 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT-----------
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC-----------
Confidence 8889999999999666 99999999999999999999999865533 245679999999664431
Q ss_pred CCCCCCCccEEEEEcCCccEEEEeCC--C-cceecCCC-CcccccceeeEEEEecCCCC-CCCccccccchhhhhccCCC
Q 001279 675 EVPVNPAEEVIIVLFKDAKISIVGGS--S-ENMISSSP-WHLKKKVIAISMEVIAEPVC-GFPIEKQAEQSAEENAAKNK 749 (1108)
Q Consensus 675 ~~~~~p~~~~L~s~s~Dg~v~v~d~~--~-g~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 749 (1108)
..+...+|++|++.|.+.+|... . |...-... ......+.++.+..++.... +....
T Consensus 151 ---D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At--------------- 212 (395)
T PF08596_consen 151 ---DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALAT--------------- 212 (395)
T ss_dssp ---SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-B---------------
T ss_pred ---CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCc---------------
Confidence 12345789999999999999642 1 21111100 11133345555555532211 00000
Q ss_pred CCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecCeeEEEecccccccccceeeeecCCC-cceeeeeeec---
Q 001279 750 PTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKN-RCCWASTIEK--- 825 (1108)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~~~~v~sl~~~~~g~~~~~~k~~~~~-~~~~~~~~~~--- 825 (1108)
....+.. ..+...+.++++|++..+|||++++ .+..+|.. .. .+|.+..|..
T Consensus 213 -----------------~~~~~~l-~~g~~i~g~vVvvSe~~irv~~~~~-----~k~~~K~~-~~~~~~~~~~vv~~~~ 268 (395)
T PF08596_consen 213 -----------------ISAMQGL-SKGISIPGYVVVVSESDIRVFKPPK-----SKGAHKSF-DDPFLCSSASVVPTIS 268 (395)
T ss_dssp -----------------HHHHHGG-GGT----EEEEEE-SSEEEEE-TT--------EEEEE--SS-EEEEEEEEEEEE-
T ss_pred -----------------hhHhhcc-ccCCCcCcEEEEEcccceEEEeCCC-----Ccccceee-ccccccceEEEEeecc
Confidence 0000000 0111226699999999999999998 35566655 43 3455444421
Q ss_pred CCceeEEEEEeecCcEEEeecCCccccccccccceeeceecCccccccccC-CCcEEEEcC-ceeEEEEeecCCCc--ee
Q 001279 826 DEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFVNLLAGENE--FS 901 (1108)
Q Consensus 826 ~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Gq~~l~~~-~e~~~~~~~~~~~~--~~ 901 (1108)
..++.+|+|++.+|.|++||||+|+.+.+.++.. ..+...++..+++ +|++++..+ .|++++++..+... .+
T Consensus 269 ~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~----~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~~~~~ 344 (395)
T PF08596_consen 269 RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP----PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGEGRTGSSL 344 (395)
T ss_dssp EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-------HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES--------
T ss_pred cCCceEEEEEECCCcEEEEECCCchHhhcccCCC----ccccccccccEECCCCCEEEEeCcccEEEEEEEccCCccccc
Confidence 1468999999999999999999999999987753 2234446777889 999665555 99999988876555 44
Q ss_pred ccCCCCcchhhhhH
Q 001279 902 ILESSPCLHDKVLE 915 (1108)
Q Consensus 902 ~~~~~~~l~~~~~~ 915 (1108)
.......||.+...
T Consensus 345 ~~~~~d~L~np~~~ 358 (395)
T PF08596_consen 345 LAPPTDTLYNPNLI 358 (395)
T ss_dssp ------B---TT--
T ss_pred cCCCCCeEECCCCC
Confidence 55667788988653
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=9.3e-18 Score=169.59 Aligned_cols=226 Identities=17% Similarity=0.246 Sum_probs=178.5
Q ss_pred cccceeeeeeCCCCCceEEEEcC-CCCEEEEEECCCcEEEEecCCcc------------eE----EeCCCCCCEEEEEEe
Q 001279 23 DLNLRIAVHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIE------------GL----LISPSQLPYKNLEFL 85 (1108)
Q Consensus 23 ~~~~~~~~~~G~~~~is~la~sp-~~~~LA~Gs~dG~I~iw~~~~~~------------~~----~~~~h~~~V~~l~fs 85 (1108)
+++++.-+...|.+.|.+|.+++ .|+++.+|+.||.|.+||+.+.. ++ -...|.-.|+.+.|-
T Consensus 31 ~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 31 QLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred eccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe
Confidence 45666666667779999999998 68999999999999999995532 11 122366789999999
Q ss_pred e-CCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCC---CEEEEEeCCCcEEEEEEecCCCeeeeeceeec
Q 001279 86 Q-NQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS---HFMYIGDENGLMSVIKYDADEGKLFQLPYNIS 161 (1108)
Q Consensus 86 ~-d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~---~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~ 161 (1108)
| |.+.+.+++-|.+++|||..+-+....+..++.|.+-+++|-. .++|+|..+-.|++.|+.. |.... .+.
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S--Gs~sH---~Ls 185 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS--GSFSH---TLS 185 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC--Cccee---eec
Confidence 8 6678889999999999999999999999999999999999864 5889999999999998875 45553 377
Q ss_pred ccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC--eEEEEeCCCcccccccccCCCCCCCCCcc
Q 001279 162 ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1108)
Q Consensus 162 ~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1108)
+|. +.|.+|.|+|..+-- |++|+.||.|++||++.. ....+-.|+.- .+|.
T Consensus 186 GHr------------~~vlaV~Wsp~~e~v-LatgsaDg~irlWDiRrasgcf~~lD~hn~k-------~~p~------- 238 (397)
T KOG4283|consen 186 GHR------------DGVLAVEWSPSSEWV-LATGSADGAIRLWDIRRASGCFRVLDQHNTK-------RPPI------- 238 (397)
T ss_pred ccc------------CceEEEEeccCceeE-EEecCCCceEEEEEeecccceeEEeecccCc-------cCcc-------
Confidence 877 889999999986554 899999999999999764 44444444210 0001
Q ss_pred cCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 240 EGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 240 ~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
+.....+.+.|.++||. .+|.++++.+.|..+++|+...+.
T Consensus 239 --~~~n~ah~gkvngla~t-Sd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 239 --LKTNTAHYGKVNGLAWT-SDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred --ccccccccceeeeeeec-ccchhhhhccCccceEEeecccCc
Confidence 01122347899999997 899999999999999999998763
No 121
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.81 E-value=1.2e-17 Score=177.45 Aligned_cols=199 Identities=18% Similarity=0.258 Sum_probs=162.3
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee-e
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA-C 112 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~-~ 112 (1108)
..++.++...|....+.+|+.|..+.+||.+..+.+ +..+|+-.|+.+.|+++...+++++.|..|+||.+...... .
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 345777777777789999999999999999876665 77789999999999999999999999999999998766543 3
Q ss_pred eecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 113 CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 113 ~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
...|.++|+.+..+|.+.|++.++.||..-+-++... ..+.+ .. ++ ...-.+++.+||| ||..
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g-~~lt~----vs-~~---------~s~v~~ts~~fHp--DgLi 361 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG-SQLTV----VS-DE---------TSDVEYTSAAFHP--DGLI 361 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCC-cEEEE----Ee-ec---------cccceeEEeeEcC--CceE
Confidence 4478999999999999999999999998666555532 12221 11 11 0114599999999 8998
Q ss_pred EEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc
Q 001279 193 VLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1108)
Q Consensus 193 ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D 271 (1108)
|.+|..||.|+|||++++..+. +-+| .++|+++.| +.+|-+|++++.|
T Consensus 362 fgtgt~d~~vkiwdlks~~~~a~Fpgh------------------------------t~~vk~i~F-sENGY~Lat~add 410 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTNVAKFPGH------------------------------TGPVKAISF-SENGYWLATAADD 410 (506)
T ss_pred EeccCCCceEEEEEcCCccccccCCCC------------------------------CCceeEEEe-ccCceEEEEEecC
Confidence 9999999999999999986543 4445 889999996 5999999999999
Q ss_pred CcEEEEecCC
Q 001279 272 GDILLWNTST 281 (1108)
Q Consensus 272 G~I~lWd~~~ 281 (1108)
+.|++||+..
T Consensus 411 ~~V~lwDLRK 420 (506)
T KOG0289|consen 411 GSVKLWDLRK 420 (506)
T ss_pred CeEEEEEehh
Confidence 9999999964
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.6e-18 Score=181.31 Aligned_cols=296 Identities=16% Similarity=0.225 Sum_probs=215.5
Q ss_pred CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC-EEEE
Q 001279 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLI 195 (1108)
Q Consensus 117 ~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~-~ll~ 195 (1108)
.+.|+++.|+|..+.+++++.||+++|+.+|.....+++. ..+. . .+|.+.+|+| +|. ++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS-~~l~--~------------fPi~~a~f~p--~G~~~i~~ 275 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS-IHLE--K------------FPIQKAEFAP--NGHSVIFT 275 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee-eeec--c------------CccceeeecC--CCceEEEe
Confidence 4689999999999999999999999999999766665543 1122 1 6799999999 566 7889
Q ss_pred EECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEE
Q 001279 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 275 (1108)
Q Consensus 196 ~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~ 275 (1108)
++....+..||+.+.++..+.... + .+++.+.... .++++++|+..+..|.|.
T Consensus 276 s~rrky~ysyDle~ak~~k~~~~~-----------------g---------~e~~~~e~Fe-VShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVTKLKPPY-----------------G---------VEEKSMERFE-VSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred cccceEEEEeeccccccccccCCC-----------------C---------cccchhheeE-ecCCCCeEEEcccCceEE
Confidence 999999999999998876542110 0 0133344444 469999999999999999
Q ss_pred EEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccccccc
Q 001279 276 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 355 (1108)
Q Consensus 276 lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~ 355 (1108)
+-...+++... .++
T Consensus 329 lLhakT~eli~----------------------------------------------------------s~K-------- 342 (514)
T KOG2055|consen 329 LLHAKTKELIT----------------------------------------------------------SFK-------- 342 (514)
T ss_pred eehhhhhhhhh----------------------------------------------------------eee--------
Confidence 87765542111 000
Q ss_pred ccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCC
Q 001279 356 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 435 (1108)
Q Consensus 356 ~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (1108)
..+.+.++
T Consensus 343 -----------ieG~v~~~------------------------------------------------------------- 350 (514)
T KOG2055|consen 343 -----------IEGVVSDF------------------------------------------------------------- 350 (514)
T ss_pred -----------eccEEeeE-------------------------------------------------------------
Confidence 00011111
Q ss_pred cceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCC
Q 001279 436 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 515 (1108)
Q Consensus 436 ~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~ 515 (1108)
+++.+++.|+..+.+|.|.+||+...
T Consensus 351 ------------------------------------------------------~fsSdsk~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 351 ------------------------------------------------------TFSSDSKELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred ------------------------------------------------------EEecCCcEEEEEcCCceEEEEecCCc
Confidence 23344456777778899999999988
Q ss_pred ceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceE
Q 001279 516 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 595 (1108)
Q Consensus 516 ~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 595 (1108)
.+...++-.+. ..=+.++.++++.|||+|+..|.|-||+....-. ...+++
T Consensus 377 ~~~~rf~D~G~----------v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~-------------------s~~PkP 427 (514)
T KOG2055|consen 377 SCLHRFVDDGS----------VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA-------------------STNPKP 427 (514)
T ss_pred ceEEEEeecCc----------cceeeeeecCCCceEEeccCcceEEEeccchhhc-------------------cCCCCc
Confidence 76644433221 1236678889999999999999999999776422 222456
Q ss_pred EEEEeecCcCEEEEEEcCCCCEEEEEeC--CCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCC
Q 001279 596 RAVFSLVNSPVRALQFTSSGAKLAVGFE--CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSE 673 (1108)
Q Consensus 596 ~~~~~~h~~~Vtslafspdg~~LavGs~--dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~ 673 (1108)
+..+......|++|+|+||+++||.+|. +..+++..+.+.++.-.......--+.|++|+|+
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS---------------- 491 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS---------------- 491 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec----------------
Confidence 7777888899999999999999998874 5679999999888773333323345678999999
Q ss_pred CCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 674 REVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 674 ~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
|.+.+|++|.++|.|.+|-.
T Consensus 492 ------P~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 492 ------PNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ------CCCceEEeecCCCceeeEee
Confidence 55889999999999999965
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1e-18 Score=172.57 Aligned_cols=125 Identities=12% Similarity=0.117 Sum_probs=103.6
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe---eeeee-cCCCCeeEEEEec--CCCEEEEEeCCCcEEEE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS---LACCL-KWESNITAFSVIS--GSHFMYIGDENGLMSVI 144 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~---~~~~~-~~~~~Itsl~~~~--~~~~l~vg~~dg~V~vw 144 (1108)
....|+..|..++..--|.+|+++|+|++|+|+.++... ++..+ +|.++|.-++|.. .+.+||+++-||.|-||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 345688888888888889999999999999999998764 33444 8999999999986 78999999999999999
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
+... +...+. |....|. ..|++|+|.|..-|-.|+++++||.|.|.+.++.
T Consensus 86 ke~~--g~w~k~-~e~~~h~------------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 86 KEEN--GRWTKA-YEHAAHS------------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred ecCC--Cchhhh-hhhhhhc------------ccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 9775 344442 5555565 7899999999888888999999999999887664
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=8.3e-18 Score=172.10 Aligned_cols=241 Identities=15% Similarity=0.165 Sum_probs=184.3
Q ss_pred eeee-CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC-cceEEeCCCCCCEEEEEEeeCCC--EEEEEeCCCcEEEEE
Q 001279 29 AVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQG--FLISITNDNEIQVWS 104 (1108)
Q Consensus 29 ~~~~-G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~-~~~~~~~~h~~~V~~l~fs~d~~--~L~S~s~d~~I~vWd 104 (1108)
.++| .|.+.|+|+|.+ ++++|+|+.|-+|+|||... .+.-.+..|.+.|++|.|.++.. +|+|++.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 4444 788999999996 89999999999999999964 45557888999999999999764 999999999999999
Q ss_pred cCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 105 LESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 105 ~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
..+..++.++ .|.+.|+.++++|.+++-++.+.|+.++.|++-..++.... ++. ...+.|.
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~---~L~---------------~~at~v~ 175 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL---NLK---------------NKATLVS 175 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee---ccC---------------CcceeeE
Confidence 9999999888 68889999999999999999999999999998754333321 121 2245599
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC
Q 001279 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1108)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1108)
|+| .|.+++++..++. -+|.++...+...... +.++.|+-|. ++.
T Consensus 176 w~~--~Gd~F~v~~~~~i-~i~q~d~A~v~~~i~~------------------------------~~r~l~~~~l--~~~ 220 (362)
T KOG0294|consen 176 WSP--QGDHFVVSGRNKI-DIYQLDNASVFREIEN------------------------------PKRILCATFL--DGS 220 (362)
T ss_pred EcC--CCCEEEEEeccEE-EEEecccHhHhhhhhc------------------------------cccceeeeec--CCc
Confidence 988 6888888888775 7888887765433322 4567788864 788
Q ss_pred EEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceE
Q 001279 264 ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVL 343 (1108)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~l 343 (1108)
.|++|..|+.|.+||..+... ...+..... +-..+..+ ..+++.++++.+.|+
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~-----------~~~~~AH~~-RVK~i~~~---------~~~~~~~lvTaSSDG------ 273 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTP-----------LTEFLAHEN-RVKDIASY---------TNPEHEYLVTASSDG------ 273 (362)
T ss_pred eEEEecCCceEEEeccCCCcc-----------ceeeecchh-heeeeEEE---------ecCCceEEEEeccCc------
Confidence 999999999999999986421 111111111 11111112 445678999999998
Q ss_pred EEEeccccc
Q 001279 344 TVLSLEWSS 352 (1108)
Q Consensus 344 tvl~l~~~~ 352 (1108)
.|++|...
T Consensus 274 -~I~vWd~~ 281 (362)
T KOG0294|consen 274 -FIKVWDID 281 (362)
T ss_pred -eEEEEEcc
Confidence 88888654
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=6.2e-19 Score=183.07 Aligned_cols=284 Identities=14% Similarity=0.158 Sum_probs=200.6
Q ss_pred eCCCCCCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001279 72 ISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 72 ~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~ 149 (1108)
+.+|...|.+|+=.|+. ..++|++.||.|++||+.++.++..+ .|.+.|..+++.. ..++++++|.+|+.|.++..
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence 36799999999999987 67899999999999999999988877 6888999999987 66778888999999999852
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccC
Q 001279 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 229 (1108)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~ 229 (1108)
... .+.+. ..+..+.-+- ....+++++. .|-|||..-...+..+. ++
T Consensus 140 ---p~~---tilg~-------------s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~sms-----wG----- 186 (433)
T KOG0268|consen 140 ---PLH---TILGK-------------SVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMS-----WG----- 186 (433)
T ss_pred ---cce---eeecc-------------cccccccccc--ccccccccCc--eeeecccccCCccceee-----cC-----
Confidence 221 12221 2345554432 2332444433 46799987665543321 11
Q ss_pred CCCCCCCCcccCcCCCCCCCCceeEEEeecCCC-CEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCc
Q 001279 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRL 308 (1108)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~ 308 (1108)
...|.++.|. |.. ..|+++.+|+.|.+||+.... |+.++.+
T Consensus 187 -------------------~Dti~svkfN-pvETsILas~~sDrsIvLyD~R~~~-----------Pl~KVi~------- 228 (433)
T KOG0268|consen 187 -------------------ADSISSVKFN-PVETSILASCASDRSIVLYDLRQAS-----------PLKKVIL------- 228 (433)
T ss_pred -------------------CCceeEEecC-CCcchheeeeccCCceEEEecccCC-----------ccceeee-------
Confidence 4568888865 554 567777799999999997542 1111100
Q ss_pred cEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCc
Q 001279 309 PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHK 388 (1108)
Q Consensus 309 ~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~ 388 (1108)
+...
T Consensus 229 ------------------------~mRT---------------------------------------------------- 232 (433)
T KOG0268|consen 229 ------------------------TMRT---------------------------------------------------- 232 (433)
T ss_pred ------------------------eccc----------------------------------------------------
Confidence 0000
Q ss_pred ceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCC
Q 001279 389 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSH 468 (1108)
Q Consensus 389 ~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1108)
T Consensus 233 -------------------------------------------------------------------------------- 232 (433)
T KOG0268|consen 233 -------------------------------------------------------------------------------- 232 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC
Q 001279 469 TQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN 548 (1108)
Q Consensus 469 ~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~ 548 (1108)
+.++++|.+-.+++|++|..++.+|+..-.-. + ....+|..+|..++|||.|
T Consensus 233 ------------------N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p-~---------~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 233 ------------------NTICWNPEAFNFVAANEDHNLYTYDMRNLSRP-L---------NVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred ------------------cceecCccccceeeccccccceehhhhhhccc-c---------hhhcccceeEEEeccCCCc
Confidence 01133444447888999999999997743311 0 1256899999999999999
Q ss_pred CeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEE
Q 001279 549 SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1108)
Q Consensus 549 ~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~ 628 (1108)
+-+++|+.|.+|+||.......- + .-...-...|.||.||.|.+++.+||+|++|+
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SR-----------d-------------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSR-----------D-------------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred chhccccccceEEEeecCCCcch-----------h-------------hhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 99999999999999998765210 0 00122356799999999999999999999999
Q ss_pred EEEccCce
Q 001279 629 VLDMNLLS 636 (1108)
Q Consensus 629 vwd~~~~~ 636 (1108)
+|.....+
T Consensus 341 lWka~Ase 348 (433)
T KOG0268|consen 341 LWKAKASE 348 (433)
T ss_pred eeecchhh
Confidence 99876543
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.6e-18 Score=169.75 Aligned_cols=207 Identities=18% Similarity=0.254 Sum_probs=163.7
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc----ceEEeCCCCCCEEEEEEee--CCCEEEEEeCCCcEEE
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI----EGLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQV 102 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~----~~~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~v 102 (1108)
...-+|...|..+..+-.|++||+++.|+.||||..... ....+.+|.+||..+.|.. -|.+|+|++.|+.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 444577788888889999999999999999999998432 2346789999999999976 7899999999999999
Q ss_pred EEcCCCeeeeee---cCCCCeeEEEEecCC--CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001279 103 WSLESRSLACCL---KWESNITAFSVISGS--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1108)
Q Consensus 103 Wd~~s~~~~~~~---~~~~~Itsl~~~~~~--~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1108)
|.-++++-...+ .|...|++++|.|.. -.|+++++||.|+|..++.+.+-... --...|. -
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~--ki~~aH~------------~ 150 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS--KIVFAHE------------I 150 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch--hhhhccc------------c
Confidence 999998654444 577899999999874 68999999999999999876333221 1123443 6
Q ss_pred CeEEEecccCCC-C-----------CEEEEEECCCeEEEEEccCCeE---EEEeCCCcccccccccCCCCCCCCCcccCc
Q 001279 178 PVVGVLPHPNSS-G-----------NRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1108)
Q Consensus 178 ~V~~v~f~P~~~-~-----------~~ll~~~~dg~V~lWdl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1108)
.|++|+|.|... | ++|++|+.|..|+||+...+.- ..+.+|
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H------------------------ 206 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH------------------------ 206 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc------------------------
Confidence 699999988532 2 5699999999999999998732 124455
Q ss_pred CCCCCCCCceeEEEeecCCC----CEEEEEEccCcEEEEecC
Q 001279 243 SEHQPEEKEISALCWASSSG----SILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 243 ~~~~~~~~~Vtsl~w~spdg----~~l~sg~~DG~I~lWd~~ 280 (1108)
..-|..++|. |.- .+|++++.||++.+|...
T Consensus 207 ------~dwVRDVAwa-P~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 207 ------KDWVRDVAWA-PSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ------chhhhhhhhc-cccCCCceeeEEecCCCcEEEEEec
Confidence 5556667886 543 589999999999999876
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=2.5e-18 Score=194.45 Aligned_cols=145 Identities=16% Similarity=0.188 Sum_probs=115.4
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccc
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1108)
.++++++.|.+++||+..+..- ...+..|.++|.|+.|+|++.+||+|++|++|+||++.+....
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~----------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~----- 255 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRC----------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK----- 255 (839)
T ss_pred eEEEecCCceEEEeeccCchhH----------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-----
Confidence 7899999999999999876522 0347799999999999999999999999999999999865221
Q ss_pred cccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCC-CEEEEEe--CCCeEEEEEccCceEEEEeecCCCCCCceEE
Q 001279 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGF--ECGRVAVLDMNLLSVLFFTDDISGSSSPIIS 653 (1108)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg-~~LavGs--~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~ 653 (1108)
...+ ..-..+|..|+|-|+. .+||+++ .|-.|+|||++.+.+-+ ..+..|...|+.
T Consensus 256 ------------------~~~t-InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~--~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 256 ------------------PKHT-INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY--ATFLEHTDSVTG 314 (839)
T ss_pred ------------------ceeE-EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc--eeeeccCccccc
Confidence 1111 2335789999999975 4677765 57789999999987764 456779999999
Q ss_pred EEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEe
Q 001279 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1108)
Q Consensus 654 l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d 698 (1108)
++|.. -+..+|.++++||+|+---
T Consensus 315 i~W~~---------------------~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 315 IAWDS---------------------GDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred eeccC---------------------CCceeeEeecCccHHHHhh
Confidence 99994 2356799999999986544
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.79 E-value=2.6e-17 Score=184.29 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=111.0
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccc
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1108)
.++||+.|.+||+|.-.+.. ..+.+|...|+.|++-+++ .+++++.||.|++|++...
T Consensus 153 ~~vTgsaDKtIklWk~~~~l-------------~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge-------- 210 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGGTLL-------------KTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE-------- 210 (745)
T ss_pred cEEeccCcceeeeccCCchh-------------hhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc--------
Confidence 79999999999999874322 3588999999999999765 5677999999999999775
Q ss_pred cccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEe
Q 001279 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTW 656 (1108)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~f 656 (1108)
++....+|..-|.+++..+++..++++++|++++||+.. .+...... ....|+++.+
T Consensus 211 ------------------~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~ 267 (745)
T KOG0301|consen 211 ------------------VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL---PTTSIWSAKV 267 (745)
T ss_pred ------------------eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec---CccceEEEEE
Confidence 778889999999999988888999999999999999988 33322211 2337888877
Q ss_pred eecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 657 TEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 657 s~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
-+. .-+++|+.||.|+||-.+
T Consensus 268 L~N-----------------------gDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 268 LLN-----------------------GDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeC-----------------------CCEEEeccCceEEEEEec
Confidence 643 228999999999999865
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=179.36 Aligned_cols=190 Identities=17% Similarity=0.178 Sum_probs=148.4
Q ss_pred CEEEEEEC-CCcEEEEecCCcceEE-eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEE
Q 001279 48 RLLAIATL-DGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFS 124 (1108)
Q Consensus 48 ~~LA~Gs~-dG~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~ 124 (1108)
.+++++.. ...|.+|.+....... ..--.++|.+|+-+|+|.+|+.++..+.|.+|.+.+|.++..+ .|-..|||+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 35555543 3678899885543332 2234678999999999999999999999999999999998877 6788999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEEec----CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC
Q 001279 125 VISGSHFMYIGDENGLMSVIKYDA----DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1108)
Q Consensus 125 ~~~~~~~l~vg~~dg~V~vw~~d~----~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1108)
|+.++.++++|+.||.|.+|.+-. .+..-...-+.+..|. -+|+.+...+.....+|++++.|.
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht------------lsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT------------LSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc------------ceeEEEEecCCCccceEEEecCCc
Confidence 999999999999999999999742 1111111114455555 578888876654556799999999
Q ss_pred eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 201 ~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
++++||++.+.++...-. +..+++++- .|-+..+++|..+|.|.+.++.
T Consensus 199 t~k~wdlS~g~LLlti~f------------------------------p~si~av~l-Dpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITF------------------------------PSSIKAVAL-DPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eEEEEEeccceeeEEEec------------------------------CCcceeEEE-cccccEEEecCCcceEEeeehh
Confidence 999999999988765533 778888884 5999999999999999987774
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=3.8e-16 Score=175.29 Aligned_cols=185 Identities=18% Similarity=0.254 Sum_probs=133.6
Q ss_pred CCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEE-EEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEE
Q 001279 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFL-ISITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L-~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~ 125 (1108)
+.++++++.||.|++||..+.+.+....+...+..++|+|++..| ++++.++.|.+||..+++.+..+.....+..+++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 467889999999999999766554333333456789999999877 4566789999999999988776654455678899
Q ss_pred ecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC-eEE
Q 001279 126 ISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVI 203 (1108)
Q Consensus 126 ~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-~V~ 203 (1108)
+|+++.+++++ .++.|++|++.. ..... .++.. ..+.+++|+| ++..++++..++ .+.
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~---~~~~~-------------~~~~~~~~~~--dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET--RKVLA---EIPVG-------------VEPEGMAVSP--DGKIVVNTSETTNMAH 140 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC--CeEEe---EeeCC-------------CCcceEEECC--CCCEEEEEecCCCeEE
Confidence 99999887664 589999998864 23321 12211 2367899988 788788887765 567
Q ss_pred EEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE-EccCcEEEEecCCC
Q 001279 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTSTT 282 (1108)
Q Consensus 204 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg-~~DG~I~lWd~~~~ 282 (1108)
+||..+++....... ...+.+++|. ++|+.|+++ ..+|.|.+||+.++
T Consensus 141 ~~d~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV------------------------------DQRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred EEeCCCCeEEEEEEc------------------------------CCCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcc
Confidence 789888766443211 2234567874 999988655 46999999999754
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5e-17 Score=166.09 Aligned_cols=198 Identities=16% Similarity=0.253 Sum_probs=145.1
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-----E---EeCCCCCCEEEEEEeeCC-CEEEEEeCCCc
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-----L---LISPSQLPYKNLEFLQNQ-GFLISITNDNE 99 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-----~---~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~ 99 (1108)
...-||...|++++|+.||+.||+++.|+.|+||+.+.-+. + .... .-+.+.|+||- ..++++-..++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEEEEccCCE
Confidence 34469999999999999999999999999999999853211 1 2222 35788999985 46677777888
Q ss_pred EEEEEcCCCee----eeee---------cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001279 100 IQVWSLESRSL----ACCL---------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1108)
Q Consensus 100 I~vWd~~s~~~----~~~~---------~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1108)
|++|....++- .+.. .|.-.|..+-....+.++++++.|..|.+|++. |.+.+. |....
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk---Gq~L~~---idtnq-- 228 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK---GQLLQS---IDTNQ-- 228 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC---Cceeee---ecccc--
Confidence 99999865431 1111 133456677777788999999999999999987 555543 44332
Q ss_pred cccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC---------eEEEEeCCCcccccccccCCCCCCCCC
Q 001279 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA---------QIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1108)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1108)
..-+..+.+| +|..++++.-.--|+||.+--+ ++..+.||
T Consensus 229 ----------~~n~~aavSP--~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH------------------- 277 (420)
T KOG2096|consen 229 ----------SSNYDAAVSP--DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH------------------- 277 (420)
T ss_pred ----------ccccceeeCC--CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-------------------
Confidence 2234445666 7887887777778899985322 12234444
Q ss_pred cccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 238 FLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 238 ~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
...|+++|| +++...+++.+.||++++||..
T Consensus 278 -----------~saV~~~aF-sn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 278 -----------QSAVLAAAF-SNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred -----------hhheeeeee-CCCcceeEEEecCCcEEEeecc
Confidence 788999996 5999999999999999999985
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.3e-17 Score=179.25 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=115.2
Q ss_pred CCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCC
Q 001279 492 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 571 (1108)
Q Consensus 492 s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~ 571 (1108)
+|....++.+++ ..|||||+....+. ..+..-..-|..|+.+|.|-.|+.|+.|+.+..||++.++.
T Consensus 575 HPs~p~lfVaTq-~~vRiYdL~kqelv-----------KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk- 641 (733)
T KOG0650|consen 575 HPSKPYLFVATQ-RSVRIYDLSKQELV-----------KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK- 641 (733)
T ss_pred cCCCceEEEEec-cceEEEehhHHHHH-----------HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-
Confidence 333334444443 57999998876543 12333334689999999999999999999999999987632
Q ss_pred ccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE------ccCceEEEEeecCC
Q 001279 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD------MNLLSVLFFTDDIS 645 (1108)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd------~~~~~~~~~~~~~~ 645 (1108)
+..++..|...|++|+|++...++|+|++||++.|+. +-..-++..+..+.
T Consensus 642 -----------------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 642 -----------------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred -----------------------hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 4566789999999999999999999999999999984 43444555667788
Q ss_pred CCCCc----eEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEE
Q 001279 646 GSSSP----IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1108)
Q Consensus 646 ~h~~~----V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~ 697 (1108)
+|... |....|. |...+|++++.||+|.+|
T Consensus 699 gH~~~~~~gVLd~~wH----------------------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWH----------------------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceeecccceEeeccc----------------------CCCceEEecCCCceEEee
Confidence 88765 8888888 557789999999999998
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.3e-17 Score=186.31 Aligned_cols=213 Identities=15% Similarity=0.276 Sum_probs=167.4
Q ss_pred eeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc-ce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001279 27 RIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 27 ~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd 104 (1108)
|+..+|+|..+-+.++|+|+|.+|.+++.||.|++|+.... +. -.+--+...|.+++-. +.+|++++.+++|.++.
T Consensus 5 r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 5 RLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYK 82 (933)
T ss_pred cccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEee
Confidence 45677999999999999999999999999999999987544 21 1222266667776554 45899999999999999
Q ss_pred cCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 105 LESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 105 ~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
+.+++.-..+ .+.-++.+++|+.+|++++.|++|-.|++.+.+....... +.+|+ ++|.+|.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-----lrgh~------------apVl~l~ 145 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-----LRGHD------------APVLQLS 145 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-----ecccC------------Cceeeee
Confidence 9998765444 6777899999999999999999999999999875433333 55666 8999999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC
Q 001279 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1108)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1108)
|+| .+++|++.+.||.|.+||+.++.+.......... .+....+.++.++|. |+|.
T Consensus 146 ~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~---------------------n~~~~s~i~~~~aW~-Pk~g 201 (933)
T KOG1274|consen 146 YDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD---------------------NEFILSRICTRLAWH-PKGG 201 (933)
T ss_pred EcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCcc---------------------ccccccceeeeeeec-CCCC
Confidence 999 7899999999999999999998776544320000 000114456678897 9999
Q ss_pred EEEEEEccCcEEEEecCCC
Q 001279 264 ILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~~ 282 (1108)
.++..+.|++|.+|+..+.
T Consensus 202 ~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 202 TLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eEEeeccCCeEEEEccCCc
Confidence 9999999999999988644
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=5.4e-16 Score=174.06 Aligned_cols=141 Identities=15% Similarity=0.205 Sum_probs=102.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEE-EEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001279 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~-vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1108)
..+++.+.|+.|.+||+.+++.+..+.....+.+++|+|++.+++ ++..++.|++|+.+. +++... ++.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~---~~~~---- 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT--GEVIGT---LPSG---- 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC--CcEEEe---ccCC----
Confidence 467888999999999999998888776666678899999998774 567789999998764 333321 2221
Q ss_pred ccCCCCCCCCCeEEEecccCCCCCEEEEE-ECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCC
Q 001279 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1108)
..+..+.|+| ++..++++ ..++.|++||+.+.+.+....+
T Consensus 73 ---------~~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---------------------------- 113 (300)
T TIGR03866 73 ---------PDPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV---------------------------- 113 (300)
T ss_pred ---------CCccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----------------------------
Confidence 2256788988 56666655 4689999999998776554432
Q ss_pred CCCCceeEEEeecCCCCEEEEEEccCc-EEEEecC
Q 001279 247 PEEKEISALCWASSSGSILAVGYIDGD-ILLWNTS 280 (1108)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~DG~-I~lWd~~ 280 (1108)
...+.+++|. |+|..++++..++. +.+||..
T Consensus 114 --~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 114 --GVEPEGMAVS-PDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred --CCCcceEEEC-CCCCEEEEEecCCCeEEEEeCC
Confidence 2235678875 99999998887654 5556654
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=2.4e-17 Score=177.25 Aligned_cols=283 Identities=12% Similarity=0.184 Sum_probs=214.1
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC---eee---eeecCCCCeeEEEEecCCCEEEEEeCCCcEEEE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR---SLA---CCLKWESNITAFSVISGSHFMYIGDENGLMSVI 144 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~---~~~---~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw 144 (1108)
....|..-|.++.+|...+++++++ .+-|+|||+... ..+ ..+....-|.++-..|+++.|++|++-.++.||
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 4456888888999998888888887 788999999654 222 233445678999999999999999999999999
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccc
Q 001279 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQL 223 (1108)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~ 223 (1108)
|+....-++.. .++... ....+++.+| |.+..++++.||.|+|||+....++. +.||
T Consensus 493 DLAapTprika---eltssa------------paCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~VrqfqGh----- 550 (705)
T KOG0639|consen 493 DLAAPTPRIKA---ELTSSA------------PACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH----- 550 (705)
T ss_pred eccCCCcchhh---hcCCcc------------hhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeecccCC-----
Confidence 99864333221 122111 3467788888 78888999999999999999986654 5666
Q ss_pred cccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccc
Q 001279 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1108)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~ 303 (1108)
...+.|+. .++||..|-+|+-|++|+.||+..+.....
T Consensus 551 -------------------------tDGascId-is~dGtklWTGGlDntvRcWDlregrqlqq---------------- 588 (705)
T KOG0639|consen 551 -------------------------TDGASCID-ISKDGTKLWTGGLDNTVRCWDLREGRQLQQ---------------- 588 (705)
T ss_pred -------------------------CCCceeEE-ecCCCceeecCCCccceeehhhhhhhhhhh----------------
Confidence 66678888 569999999999999999999976521110
Q ss_pred ccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCC
Q 001279 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1108)
Q Consensus 304 ~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~ 383 (1108)
. ++. +
T Consensus 589 h-----------------dF~---------------------------S------------------------------- 593 (705)
T KOG0639|consen 589 H-----------------DFS---------------------------S------------------------------- 593 (705)
T ss_pred h-----------------hhh---------------------------h-------------------------------
Confidence 0 000 0
Q ss_pred CCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhcc
Q 001279 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1108)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1108)
T Consensus 594 -------------------------------------------------------------------------------- 593 (705)
T KOG0639|consen 594 -------------------------------------------------------------------------------- 593 (705)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEE
Q 001279 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1108)
Q Consensus 464 ~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~la 543 (1108)
.+..+..+|.+..++.|..++.|.|-......-. .+.-|..-|.+|.
T Consensus 594 ---------------------QIfSLg~cP~~dWlavGMens~vevlh~skp~ky------------qlhlheScVLSlK 640 (705)
T KOG0639|consen 594 ---------------------QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY------------QLHLHESCVLSLK 640 (705)
T ss_pred ---------------------hheecccCCCccceeeecccCcEEEEecCCccce------------eecccccEEEEEE
Confidence 0011145577778999999999988887766532 2567888999999
Q ss_pred EEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeC
Q 001279 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE 623 (1108)
Q Consensus 544 fs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~ 623 (1108)
|.+-|+++++.+.|..+-.|...-+.. ..-..-..+|+++.+|.|.+++++|+.
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPyGas--------------------------iFqskE~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPYGAS--------------------------IFQSKESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ecccCceeeecCchhhhhhccCccccc--------------------------eeeccccCcceeeeeccCceEEEecCC
Confidence 999999999999999999998765521 111235788999999999999999999
Q ss_pred CCeEEEEEc
Q 001279 624 CGRVAVLDM 632 (1108)
Q Consensus 624 dG~V~vwd~ 632 (1108)
|..-.||.+
T Consensus 695 dkkATVYeV 703 (705)
T KOG0639|consen 695 DKKATVYEV 703 (705)
T ss_pred CcceEEEEE
Confidence 988888865
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=1.1e-16 Score=177.57 Aligned_cols=232 Identities=16% Similarity=0.203 Sum_probs=158.5
Q ss_pred eeeeCCCCCceEEEEcC---CCCEEEEEECCCcEEEEecCCcc-------eEEeCCCCCCEEEEEEeeCCCEEEEEeCCC
Q 001279 29 AVHYGIPATASILAFDH---IQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp---~~~~LA~Gs~dG~I~iw~~~~~~-------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~ 98 (1108)
+.+.|+|-+..+..|++ ...+||++.+||.|.+||..... ......|...|-.+.|.|...+|++++.|.
T Consensus 43 ~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDs 122 (720)
T KOG0321|consen 43 YANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDS 122 (720)
T ss_pred cccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCc
Confidence 45567777776666654 45689999999999999974332 245667999999999999888999999999
Q ss_pred cEEEEEcCCCeeeee---ecCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeee----e---ceee-cccc--
Q 001279 99 EIQVWSLESRSLACC---LKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQ----L---PYNI-SADA-- 164 (1108)
Q Consensus 99 ~I~vWd~~s~~~~~~---~~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~----~---~~~i-~~~~-- 164 (1108)
++++||+.+.++... ++|.+.|-+++|.+.. ..+++|+.||.|.|||.....-.... . .++- +.+.
T Consensus 123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 999999999987754 4899999999999977 47889999999999998653200000 0 0000 0000
Q ss_pred cccccCCCC----CCCCCeEEEecccCCCCCEEEEEEC-CCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcc
Q 001279 165 LSEKAGFPL----LSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1108)
Q Consensus 165 ~~~~~~~~~----~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1108)
+.+.+.-.. .-...|+.+.| . |...|++++. |+.|+|||++........+. .+. .
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~f--k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep-------------~~~----~ 262 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLF--K-DESTLASAGAADSTIKVWDLRKNYTAYRQEP-------------RGS----D 262 (720)
T ss_pred hhccccccccccCceeeeeEEEEE--e-ccceeeeccCCCcceEEEeecccccccccCC-------------Ccc----c
Confidence 001110011 11245788888 5 3445888777 99999999998765433221 000 0
Q ss_pred cCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 240 EGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 240 ~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
... ......-.+++++-. ..|.+|++.+.|+.|++||+.+.
T Consensus 263 ~~~-t~skrs~G~~nL~lD-ssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 263 KYP-THSKRSVGQVNLILD-SSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred Ccc-CcccceeeeEEEEec-CCCCeEEEEecCCcEEEEecccc
Confidence 000 001114467888854 77899999999999999999754
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.7e-16 Score=160.57 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=97.6
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|..-|++++|++.|++|++++.|++|+||+++.++++...+ -....|. +.|..|.|-+...|..++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T-s~Wrah~------------~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT-SSWRAHD------------GSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe-eeEEecC------------CcEEEEEecCccccceEE
Confidence 456779999999999999999999999999987777766532 2233343 889999997777899999
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC--CCEEEEEEccC
Q 001279 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGYIDG 272 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd--g~~l~sg~~DG 272 (1108)
+++.|++++||.-..... ..| ..++. ........+..|+.++|. |. |-.|++++.||
T Consensus 78 ~cS~Drtv~iWEE~~~~~---~~~-~~~Wv----------------~~ttl~DsrssV~DV~Fa-P~hlGLklA~~~aDG 136 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSE---EAH-GRRWV----------------RRTTLVDSRSSVTDVKFA-PKHLGLKLAAASADG 136 (361)
T ss_pred EEecCCceeeeeeccccc---ccc-cceeE----------------EEEEeecCCcceeEEEec-chhcceEEEEeccCc
Confidence 999999999997532111 000 00000 000011227789999975 64 66899999999
Q ss_pred cEEEEecCCCC
Q 001279 273 DILLWNTSTTA 283 (1108)
Q Consensus 273 ~I~lWd~~~~~ 283 (1108)
.|++|+..+..
T Consensus 137 ~lRIYEA~dp~ 147 (361)
T KOG2445|consen 137 ILRIYEAPDPM 147 (361)
T ss_pred EEEEEecCCcc
Confidence 99999987653
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.1e-16 Score=161.41 Aligned_cols=206 Identities=15% Similarity=0.178 Sum_probs=156.0
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
+--++. +.|+.|++.|.+||+|..||+|-|||+.+... ..+..|..||++|+||+||+.|+++|.|..|.+||+..+.
T Consensus 20 tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 20 TLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred eccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 334455 89999999999999999999999999976554 4788899999999999999999999999999999999999
Q ss_pred eeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 110 LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 110 ~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
+++.+.+.++|+...|+|.....++++ -+-.-.+.+++....++ ++.+.- ... .....+..|++
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~------Lp~d~d-~dl------n~sas~~~fdr-- 163 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV------LPKDDD-GDL------NSSASHGVFDR-- 163 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee------ccCCCc-ccc------ccccccccccC--
Confidence 999999999999999999765443332 23334555555321111 121110 000 01122336766
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
.|+++++|...|-+.++|.++.+++..+..+. ...|..+-+ +..|++|+.-
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits----------------------------~~~IK~I~~-s~~g~~liiN 214 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLECVASFRITS----------------------------VQAIKQIIV-SRKGRFLIIN 214 (405)
T ss_pred CCCEEEEecCcceEEEEecchheeeeeeeech----------------------------heeeeEEEE-eccCcEEEEe
Confidence 68999999999999999999988765442200 356777775 5899999999
Q ss_pred EccCcEEEEecCC
Q 001279 269 YIDGDILLWNTST 281 (1108)
Q Consensus 269 ~~DG~I~lWd~~~ 281 (1108)
+.|..|+.|++..
T Consensus 215 tsDRvIR~ye~~d 227 (405)
T KOG1273|consen 215 TSDRVIRTYEISD 227 (405)
T ss_pred cCCceEEEEehhh
Confidence 9999999999863
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.75 E-value=4e-17 Score=175.51 Aligned_cols=149 Identities=18% Similarity=0.152 Sum_probs=120.7
Q ss_pred CccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEec
Q 001279 487 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1108)
Q Consensus 487 ~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~ 566 (1108)
+++.+++||..|-||+-|++||.||...+...+ -......|-+|.+||++.+|++|-.++.|.|-..+
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlq------------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ------------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhh------------hhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 344677888899999999999999998766221 11224579999999999999999999998887765
Q ss_pred CCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCC
Q 001279 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1108)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~ 646 (1108)
... ...+..|..-|.+|.|++.|+++++.+.|..+-.|.+.-+.-+|+..
T Consensus 623 kp~--------------------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---- 672 (705)
T KOG0639|consen 623 KPE--------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---- 672 (705)
T ss_pred Ccc--------------------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----
Confidence 531 23346789999999999999999999999999999999888887655
Q ss_pred CCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
-.++|.++..+ .+..++++|+.|..-.||..
T Consensus 673 E~SsVlsCDIS----------------------~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 ESSSVLSCDIS----------------------FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCcceeeeec----------------------cCceEEEecCCCcceEEEEE
Confidence 46789998888 45889999999988777753
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.73 E-value=6.1e-16 Score=171.79 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=112.3
Q ss_pred CCCcEEEEEec-CCcEEEEeCCCCceeeEeeeccccceeeccCC---CCCeEEEEEEeCCCeEEEEecCceEEEEEecCC
Q 001279 493 SVDRVYLAGYH-DGSVRIWDATYPVFKLICALDAEVQGIEVAGS---RAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1108)
Q Consensus 493 ~~~~llatgs~-DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h---~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~ 568 (1108)
.|...||+++. |+.|+|||+...... +....... ..+..| ...+++|..+..|.+|...+.|+.|++|++...
T Consensus 227 kDe~tlaSaga~D~~iKVWDLRk~~~~--~r~ep~~~-~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 227 KDESTLASAGAADSTIKVWDLRKNYTA--YRQEPRGS-DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred eccceeeeccCCCcceEEEeecccccc--cccCCCcc-cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 45557888877 999999999877633 22111000 012223 446888888888899888888999999999876
Q ss_pred CCCccccccccCccceeecccCCcceEEEEEeecCcC-E-EEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCC
Q 001279 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP-V-RALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1108)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~-V-tslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~ 646 (1108)
... ++..+.++... + -.-..+|++.+|++|+.|...++|.+.....- .-.+.|
T Consensus 304 s~s-----------------------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~--~~~l~G 358 (720)
T KOG0321|consen 304 SIS-----------------------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP--PALLLG 358 (720)
T ss_pred CcC-----------------------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC--hhhhhC
Confidence 321 22222222111 1 11236899999999999999999999887543 235679
Q ss_pred CCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCc
Q 001279 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1108)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g 702 (1108)
|.-.|++++|.+.... . +++++.|..+.+|+...|
T Consensus 359 ht~eVt~V~w~pS~~t--------------------~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATT--------------------P-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceEEEEEeeccccCC--------------------C-ceeeccCcceEEEeccCc
Confidence 9999999999976433 2 677799999999998654
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.5e-15 Score=175.49 Aligned_cols=160 Identities=15% Similarity=0.291 Sum_probs=126.6
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-eeeeeec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~~~~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
+...|+...+.|+|.|+|.+|++|+.|+.|++|+..+- +.-.++. +...|++++.. ++++++|+.+++|.++.++.
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 34578899999999999999999999999999997665 2222222 56667777664 55999999999999999876
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCCcccccccc
Q 001279 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGV 227 (1108)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~ 227 (1108)
.+..-..++|++| +.+++|+ .+|+.++.|+.|-.|++-++..... ...++|
T Consensus 86 ~~~~~iL~Rftlp-----------------~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh--------- 137 (933)
T KOG1274|consen 86 GEEDTILARFTLP-----------------IRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH--------- 137 (933)
T ss_pred CCccceeeeeecc-----------------ceEEEEe--cCCcEEEeecCceeEEEEeccccchheeeccc---------
Confidence 4333222234443 7888884 4788899999999999999877644 556777
Q ss_pred cCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+.+|.++.++ |++.+||+.+.||.|++|++.++
T Consensus 138 ---------------------~apVl~l~~~-p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 138 ---------------------DAPVLQLSYD-PKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred ---------------------CCceeeeeEc-CCCCEEEEEecCceEEEEEcccc
Confidence 8899999986 99999999999999999999755
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=9.1e-18 Score=188.44 Aligned_cols=167 Identities=17% Similarity=0.276 Sum_probs=151.0
Q ss_pred CcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceE
Q 001279 481 GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLV 560 (1108)
Q Consensus 481 g~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V 560 (1108)
||...+.++.++....+|++|+.||+|++||+...... ..|.+|...+..|+|+|.+.|.|+|+.|+.+
T Consensus 68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v-----------rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~ 136 (825)
T KOG0267|consen 68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV-----------RTLTGHLLNITSVDFHPYGEFFASGSTDTDL 136 (825)
T ss_pred ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh-----------hhhhccccCcceeeeccceEEeccccccccc
Confidence 56677778899999999999999999999999866533 3578999999999999999999999999999
Q ss_pred EEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEE
Q 001279 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFF 640 (1108)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~ 640 (1108)
++||.... -|...+.+|...|..++|+|+|+++++|++|.+|+|||...++++
T Consensus 137 ~iwD~Rk~-------------------------Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-- 189 (825)
T KOG0267|consen 137 KIWDIRKK-------------------------GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-- 189 (825)
T ss_pred eehhhhcc-------------------------CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc--
Confidence 99999854 277888999999999999999999999999999999999999998
Q ss_pred eecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 641 TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 641 ~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
+.+.+|...|.++.|.+. +.+|..|+.|++|.+||+++-++|.+.
T Consensus 190 -~ef~~~e~~v~sle~hp~----------------------e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 190 -KEFKSHEGKVQSLEFHPL----------------------EVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred -cccccccccccccccCch----------------------hhhhccCCCCceeeeeccceeEEeecc
Confidence 577889999999999954 677999999999999999999998776
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=8e-16 Score=164.95 Aligned_cols=200 Identities=19% Similarity=0.250 Sum_probs=157.9
Q ss_pred CCCCCceEEEEcCCC--CEEEEEECCCcEEEEecCC-----cceEEeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEE
Q 001279 33 GIPATASILAFDHIQ--RLLAIATLDGRIKVIGGDG-----IEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 33 G~~~~is~la~sp~~--~~LA~Gs~dG~I~iw~~~~-----~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd 104 (1108)
-+++.|++++|+|.. +++|+|...|+|-+||+.+ ..+.+..+|.++|++|.|+| |-.++++.|.||+|++=|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 468899999999965 5899999999999999953 34568889999999999999 457899999999999999
Q ss_pred cCCCeeeeeec---CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001279 105 LESRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 105 ~~s~~~~~~~~---~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
++....-..+. -...+..+.|+....-++.|+.-|...+||+.....+.- .+.-|. ..|++
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~----~~~lh~------------kKI~s 327 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE----NLRLHK------------KKITS 327 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch----hhhhhh------------cccce
Confidence 98875433332 234577888888888889998888889999876543322 123333 46999
Q ss_pred EecccCCCCCEEEEEECCCeEEEEEccCCe-----EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQ-----IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
|+++|.. ...|++++.|++.+|||++.-. .+....| ...|.+++
T Consensus 328 v~~NP~~-p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H------------------------------rrsV~sAy 376 (498)
T KOG4328|consen 328 VALNPVC-PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH------------------------------RRSVNSAY 376 (498)
T ss_pred eecCCCC-chheeecccCcceeeeehhhhcCCCCcceecccc------------------------------cceeeeeE
Confidence 9999984 4459999999999999987632 1233333 78899999
Q ss_pred eecCCCCEEEEEEccCcEEEEecC
Q 001279 257 WASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
| ||.|-.|++.+.|..|++||..
T Consensus 377 F-SPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 377 F-SPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred E-cCCCCceEeeccCCceEEeecc
Confidence 6 6988889999999999999974
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=2.4e-15 Score=152.33 Aligned_cols=161 Identities=17% Similarity=0.281 Sum_probs=123.7
Q ss_pred EeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEEcCCCe------e----eeee------cCCCCeeEEEEecCC-CEE
Q 001279 71 LISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRS------L----ACCL------KWESNITAFSVISGS-HFM 132 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd~~s~~------~----~~~~------~~~~~Itsl~~~~~~-~~l 132 (1108)
+...|.+.|..|+..+ .|++++|++.||.|.|||++... + .+.. .|.-.|+.+.|-|-. ..+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4567899999999987 67899999999999999997642 1 1211 234579999998855 566
Q ss_pred EEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC-CCEEEEEECCCeEEEEEccCCe
Q 001279 133 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS-GNRVLIAYENALVILWDVSEAQ 211 (1108)
Q Consensus 133 ~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~-~~~ll~~~~dg~V~lWdl~~~~ 211 (1108)
.+++-|.+++|||..+.+... .|+++ +.|++-+++|-.. ..++++|+.+-.|++-|+.+|.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~---~F~me---------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV---DFKME---------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ecccccceEEEeecccceeeE---EeecC---------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 778889999999987532111 14444 5688888888544 5567788888899999999997
Q ss_pred EE-EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEEEEEccCcEEEEecC
Q 001279 212 II-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 212 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~DG~I~lWd~~ 280 (1108)
.. .+.|| ...|.++.|. |... .|++|+.||.|++||+.
T Consensus 180 ~sH~LsGH------------------------------r~~vlaV~Ws-p~~e~vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 180 FSHTLSGH------------------------------RDGVLAVEWS-PSSEWVLATGSADGAIRLWDIR 219 (397)
T ss_pred ceeeeccc------------------------------cCceEEEEec-cCceeEEEecCCCceEEEEEee
Confidence 74 45677 8889999996 6555 57899999999999985
No 145
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=6.7e-16 Score=166.16 Aligned_cols=275 Identities=15% Similarity=0.197 Sum_probs=198.0
Q ss_pred CCCccccccceeeeeeCCCCCceEEEEcCCC-CEEEEEECCCcEEEEecCCcc-----------eEEeCCCCCCEEEEEE
Q 001279 17 GSLTAADLNLRIAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIE-----------GLLISPSQLPYKNLEF 84 (1108)
Q Consensus 17 ~~l~~~~~~~~~~~~~G~~~~is~la~sp~~-~~LA~Gs~dG~I~iw~~~~~~-----------~~~~~~h~~~V~~l~f 84 (1108)
+++-+...++++...+-|++.|..+.|=|+. .++|+++.+|.|+|||..... -+.+.+|+..=..|+|
T Consensus 106 ~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsW 185 (422)
T KOG0264|consen 106 GGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSW 185 (422)
T ss_pred CCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccc
Confidence 3444566677888889999999999999965 578889999999999984321 1256678776667999
Q ss_pred eeC-CCEEEEEeCCCcEEEEEcCCCee-------e-eeecCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeee
Q 001279 85 LQN-QGFLISITNDNEIQVWSLESRSL-------A-CCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLF 154 (1108)
Q Consensus 85 s~d-~~~L~S~s~d~~I~vWd~~s~~~-------~-~~~~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~ 154 (1108)
++. ..+|++++.|++|.+||+..... . ....|...|..++|++.. ..+++++.|+.+.|||......+..
T Consensus 186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence 874 57899999999999999965432 1 222688899999999865 5778888999999999874222222
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe--EEEEeCCCcccccccccCCCC
Q 001279 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPS 232 (1108)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~--~~~~~~~~~~~~~~~~~~~~~ 232 (1108)
....+|. ..|.|++|+|. ++..|++|+.|++|.|||++.-. +..+.+|
T Consensus 266 ---~~~~ah~------------~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-------------- 315 (422)
T KOG0264|consen 266 ---HSVKAHS------------AEVNCVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGH-------------- 315 (422)
T ss_pred ---ccccccC------------CceeEEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCC--------------
Confidence 2255555 88999999998 46679999999999999998753 3445555
Q ss_pred CCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEE
Q 001279 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~ 312 (1108)
...|.++.|.......|++++.|+.+.+||+......+........+ ..+....+.+...|..
T Consensus 316 ----------------~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgp-pEllF~HgGH~~kV~D 378 (422)
T KOG0264|consen 316 ----------------EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGP-PELLFIHGGHTAKVSD 378 (422)
T ss_pred ----------------CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCC-cceeEEecCccccccc
Confidence 88999999974455688999999999999997554332200011111 1112223334555666
Q ss_pred EEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccc
Q 001279 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1108)
Q Consensus 313 ~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1108)
++|+. .....+++...++ ++.+|...
T Consensus 379 fsWnp-------~ePW~I~SvaeDN-------~LqIW~~s 404 (422)
T KOG0264|consen 379 FSWNP-------NEPWTIASVAEDN-------ILQIWQMA 404 (422)
T ss_pred ccCCC-------CCCeEEEEecCCc-------eEEEeecc
Confidence 66644 4577888888886 77777655
No 146
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=2.8e-16 Score=169.08 Aligned_cols=217 Identities=12% Similarity=0.157 Sum_probs=161.2
Q ss_pred CCCCCceEEEEcCCC-CEEEEEECCCcEEEEecCCcc--------eEEeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEE
Q 001279 33 GIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIE--------GLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQV 102 (1108)
Q Consensus 33 G~~~~is~la~sp~~-~~LA~Gs~dG~I~iw~~~~~~--------~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~v 102 (1108)
||...-..|+|++.. ..|++|+.|+.|++||+.... ......|+..|..++|++ +...+.+++.|+.+.|
T Consensus 175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 445556678999855 479999999999999984322 236778999999999998 5577899999999999
Q ss_pred EEcCCC--eeeeee-cCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001279 103 WSLESR--SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1108)
Q Consensus 103 Wd~~s~--~~~~~~-~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1108)
||+++. +..... .|.++|.|++|+|-+ ..||+|+.|++|.+||+.. |.+.++.+.+|. +.
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn----L~~~lh~~e~H~------------de 318 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN----LNKPLHTFEGHE------------DE 318 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh----cccCceeccCCC------------cc
Confidence 999963 333333 688999999999965 6789999999999999874 444457788887 88
Q ss_pred eEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEee
Q 001279 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1108)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1108)
|.+|.|+|. ..+.|++++.|+.+.|||+..-.-...- ...-.+..+.+-.+..+...|..+.|.
T Consensus 319 v~~V~WSPh-~etvLASSg~D~rl~vWDls~ig~eq~~---------------eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 319 VFQVEWSPH-NETVLASSGTDRRLNVWDLSRIGEEQSP---------------EDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred eEEEEeCCC-CCceeEecccCCcEEEEeccccccccCh---------------hhhccCCcceeEEecCcccccccccCC
Confidence 999999997 4556999999999999998753111000 000001111112222337789999997
Q ss_pred cCCCCEEEEEEccCcEEEEecCC
Q 001279 259 SSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
..+...|++.+.|+.+.||.+..
T Consensus 383 p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCeEEEEecCCceEEEeeccc
Confidence 44456788899999999999863
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.4e-15 Score=151.89 Aligned_cols=159 Identities=11% Similarity=0.162 Sum_probs=112.2
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCC
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~ 569 (1108)
.+.+.|+++++|...|.+-++|+.+-.+...+.... ...|..+.|+..|+.|++-+.|..||.|++..-.
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeech----------heeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 356777899999999999999999888774444321 1468899999999999999999999999987432
Q ss_pred CCccccccccCccceeecccCCcceEEEEEee--cCcCEEEEEEcCCCCEEEEEe-CCCeEEEEEccCceEEEEeecCCC
Q 001279 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSL--VNSPVRALQFTSSGAKLAVGF-ECGRVAVLDMNLLSVLFFTDDISG 646 (1108)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--h~~~Vtslafspdg~~LavGs-~dG~V~vwd~~~~~~~~~~~~~~~ 646 (1108)
.++.. +++. +...++. ....=.+++||.+|.+++.|+ ....++||.-..|.++ ..+.|
T Consensus 230 ~~~r~-------~e~e---------~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV---KILhG 290 (405)
T KOG1273|consen 230 DEGRD-------GEVE---------PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV---KILHG 290 (405)
T ss_pred ccCcc-------CCcC---------hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee---eeecC
Confidence 21110 0000 0000000 112234689999999998886 4557999999999988 56666
Q ss_pred CC-CceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 647 SS-SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 647 h~-~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
.. .....+.|.+. ...+++- ..|.|++|...
T Consensus 291 ~kgE~l~DV~whp~----------------------rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 291 TKGEELLDVNWHPV----------------------RPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred Cchhheeecccccc----------------------eeeeeec-cCCceEEEEee
Confidence 66 56677888844 4556666 88999999864
No 148
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.1e-15 Score=156.41 Aligned_cols=191 Identities=14% Similarity=0.202 Sum_probs=146.7
Q ss_pred CCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEee--CCCEEEEEeCCCcEEEEEcCCCeeeeeec---CC-CC
Q 001279 47 QRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLESRSLACCLK---WE-SN 119 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWd~~s~~~~~~~~---~~-~~ 119 (1108)
+..+|++-..|.|+|||..+...+ ....+...+..+.|.. ...-+.+++.||+|++||+++........ ++ .+
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 367999999999999999775554 5667888899999977 34568899999999999999986655543 23 46
Q ss_pred eeEEEEecCCCEEEEEeC----CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEE
Q 001279 120 ITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1108)
Q Consensus 120 Itsl~~~~~~~~l~vg~~----dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1108)
-+|++.....+.+++|.+ +-.|.+||+...+..+.+ .+..|. +-|++|.|||. +.+.|++
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~---~~eSH~------------DDVT~lrFHP~-~pnlLlS 183 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ---LNESHN------------DDVTQLRFHPS-DPNLLLS 183 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh---hhhhcc------------CcceeEEecCC-CCCeEEe
Confidence 778888778889999974 667888988654322322 134444 78999999998 6777999
Q ss_pred EECCCeEEEEEccCCeE----EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc
Q 001279 196 AYENALVILWDVSEAQI----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1108)
Q Consensus 196 ~~~dg~V~lWdl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D 271 (1108)
|+.||.|.|||+....- ..++.+ ...|.++.|.++.-+.|.+-+..
T Consensus 184 GSvDGLvnlfD~~~d~EeDaL~~viN~------------------------------~sSI~~igw~~~~ykrI~clTH~ 233 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDNEEDALLHVINH------------------------------GSSIHLIGWLSKKYKRIMCLTHM 233 (376)
T ss_pred ecccceEEeeecCCCcchhhHHHhhcc------------------------------cceeeeeeeecCCcceEEEEEcc
Confidence 99999999999876521 222222 55689999996655779999999
Q ss_pred CcEEEEecCCCC
Q 001279 272 GDILLWNTSTTA 283 (1108)
Q Consensus 272 G~I~lWd~~~~~ 283 (1108)
+++.+|+++.+.
T Consensus 234 Etf~~~ele~~~ 245 (376)
T KOG1188|consen 234 ETFAIYELEDGS 245 (376)
T ss_pred CceeEEEccCCC
Confidence 999999998774
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.8e-17 Score=182.07 Aligned_cols=195 Identities=19% Similarity=0.295 Sum_probs=166.4
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC-cceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
.-.+||.+.|.++.|++...+||.|+.+|.|++||+.. ..+..+.+|...+..|.|+|-+.|.++++.|..+++||++.
T Consensus 64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK 143 (825)
T ss_pred heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence 34589999999999999999999999999999999964 45568889999999999999999999999999999999997
Q ss_pred Ceeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 108 ~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
..+.+.+ +|...|.++.|+|+|.|++.|.+|.+++||+... |++... |+.|+ +.|.++.|||
T Consensus 144 ~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a--gk~~~e---f~~~e------------~~v~sle~hp 206 (825)
T KOG0267|consen 144 KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA--GKLSKE---FKSHE------------GKVQSLEFHP 206 (825)
T ss_pred cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc--cccccc---ccccc------------ccccccccCc
Confidence 7777776 5888899999999999999999999999999764 566643 66666 7899999999
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE
Q 001279 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1108)
Q Consensus 187 ~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1108)
. .-++..|+.|++|++||+++..++-..+. +...|.|+.|. |+|..++
T Consensus 207 ~--e~Lla~Gs~d~tv~f~dletfe~I~s~~~-----------------------------~~~~v~~~~fn-~~~~~~~ 254 (825)
T KOG0267|consen 207 L--EVLLAPGSSDRTVRFWDLETFEVISSGKP-----------------------------ETDGVRSLAFN-PDGKIVL 254 (825)
T ss_pred h--hhhhccCCCCceeeeeccceeEEeeccCC-----------------------------ccCCceeeeec-CCceeee
Confidence 4 44588999999999999998776643322 15578889965 9999999
Q ss_pred EEEccC
Q 001279 267 VGYIDG 272 (1108)
Q Consensus 267 sg~~DG 272 (1108)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 887654
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=1e-12 Score=153.83 Aligned_cols=370 Identities=21% Similarity=0.349 Sum_probs=256.0
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc--eEEeCCCC-CCEEEEEE-eeCCC-EEEEEeC-CCcEEEE
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLISPSQ-LPYKNLEF-LQNQG-FLISITN-DNEIQVW 103 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~--~~~~~~h~-~~V~~l~f-s~d~~-~L~S~s~-d~~I~vW 103 (1108)
...++...+.++.|++.+..++.++.|+.+.+|+..... ......+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456888999999999999999999999999999997663 44444433 47888888 77777 5555555 8999999
Q ss_pred EcCC-Ceee-eeecCCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 104 SLES-RSLA-CCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 104 d~~s-~~~~-~~~~~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
|+.. .... ....|...|.+++|++++.++++++. ++.+++|+... +.... .+.+|. ..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~------------~~v~ 202 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPLS---TLAGHT------------DPVS 202 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceEE---eeccCC------------CceE
Confidence 9998 4444 44578899999999999999888886 99999999874 22322 244444 7799
Q ss_pred EEecccCCCCC-EEEEEECCCeEEEEEccCCeEEE--EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEe
Q 001279 181 GVLPHPNSSGN-RVLIAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1108)
Q Consensus 181 ~v~f~P~~~~~-~ll~~~~dg~V~lWdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1108)
++.|+| ++. .+++++.|+.|++||...+.... ..+| ...+ -.+|
T Consensus 203 ~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~------------------------------~~~~-~~~~ 249 (466)
T COG2319 203 SLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH------------------------------SDSV-VSSF 249 (466)
T ss_pred EEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCC------------------------------Ccce-eEeE
Confidence 999997 454 44555899999999988666554 3333 2222 1154
Q ss_pred ecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCC
Q 001279 258 ASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEI 337 (1108)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~ 337 (1108)
++++..+++++.|+.+++|+...... .+....+..
T Consensus 250 -~~~~~~~~~~~~d~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~- 284 (466)
T COG2319 250 -SPDGSLLASGSSDGTIRLWDLRSSSS-------------------------------------------LLRTLSGHS- 284 (466)
T ss_pred -CCCCCEEEEecCCCcEEEeeecCCCc-------------------------------------------EEEEEecCC-
Confidence 58888999999999999999864310 000000000
Q ss_pred CCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCC
Q 001279 338 GSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEK 417 (1108)
Q Consensus 338 ~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~ 417 (1108)
T Consensus 285 -------------------------------------------------------------------------------- 284 (466)
T COG2319 285 -------------------------------------------------------------------------------- 284 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcE
Q 001279 418 KPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRV 497 (1108)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~l 497 (1108)
..+.+ +.+.|++..
T Consensus 285 -----------------~~v~~-------------------------------------------------~~~~~~~~~ 298 (466)
T COG2319 285 -----------------SSVLS-------------------------------------------------VAFSPDGKL 298 (466)
T ss_pred -----------------ccEEE-------------------------------------------------EEECCCCCE
Confidence 00000 022234446
Q ss_pred EEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEE-ecCceEEEEEecCCCCCccccc
Q 001279 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVG-NEFGLVYIYNLNGSLDAKNFLF 576 (1108)
Q Consensus 498 latgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg-~~dG~V~lw~l~~~~~~~~~~~ 576 (1108)
+++++.|+.+++||........... ...|...|..+.|.+++..++.+ ..|+.+.+|++.....
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------ 363 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKLLSSLT---------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP------ 363 (466)
T ss_pred EEEeeCCCcEEEEEcCCCceEEEee---------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce------
Confidence 6778888999999888776441111 23666689999994232455555 6789999999877620
Q ss_pred cccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEE-EeCCCeEEEEEccCceEEEEeecCCCCCCceEEEE
Q 001279 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAV-GFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMT 655 (1108)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~Lav-Gs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~ 655 (1108)
.... .....+..+.+++ ...... +..++.+.+|+............ +...+....
T Consensus 364 -------------------~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 419 (466)
T COG2319 364 -------------------LKTL-EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG---HTSRVTSLD 419 (466)
T ss_pred -------------------eEEe-cCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC---CCCcEEEEE
Confidence 1111 1112288999998 533333 68999999999999887743322 226777777
Q ss_pred eeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 656 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 656 fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
+. +++..+++++.++.+.+|+..+
T Consensus 420 ~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 420 FS----------------------PDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EC----------------------CCCcEEEEecCCCcEEEEeccC
Confidence 77 4477788899999999999876
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=8.7e-15 Score=161.35 Aligned_cols=203 Identities=15% Similarity=0.182 Sum_probs=143.6
Q ss_pred eeeeee-CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCC-EEEEEeCCCcEEEEE
Q 001279 27 RIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWS 104 (1108)
Q Consensus 27 ~~~~~~-G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~vWd 104 (1108)
+..+-| ||.+.|.||..+|.|.+||+|+.||+|+||.+.+..++....-.+.|.+++|+|.+. -++.++.+..+-|-|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 344444 999999999999999999999999999999998887776666677899999999653 233333333344333
Q ss_pred cCCC--------------------------------------eeeeeecCCCCeeEEEEecCCCEEEEEeCC---CcEEE
Q 001279 105 LESR--------------------------------------SLACCLKWESNITAFSVISGSHFMYIGDEN---GLMSV 143 (1108)
Q Consensus 105 ~~s~--------------------------------------~~~~~~~~~~~Itsl~~~~~~~~l~vg~~d---g~V~v 143 (1108)
..-| .+...+.|...|..+.|+..|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2111 112334567789999999999999988754 34445
Q ss_pred EEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCccc
Q 001279 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQ 222 (1108)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~ 222 (1108)
..+.. ...|.||+.. .+.|.++.|||. ..+|++++.. .|+|||+....++. +...
T Consensus 551 HQLSK---~~sQ~PF~ks--------------kG~vq~v~FHPs--~p~lfVaTq~-~vRiYdL~kqelvKkL~tg---- 606 (733)
T KOG0650|consen 551 HQLSK---RKSQSPFRKS--------------KGLVQRVKFHPS--KPYLFVATQR-SVRIYDLSKQELVKKLLTG---- 606 (733)
T ss_pred Eeccc---ccccCchhhc--------------CCceeEEEecCC--CceEEEEecc-ceEEEehhHHHHHHHHhcC----
Confidence 55442 3333445332 166999999995 4446666554 56999998865432 1111
Q ss_pred ccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
.+.|.+++- .|.|..|+.|+.|+.+..+|+.
T Consensus 607 --------------------------~kwiS~msi-hp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 607 --------------------------SKWISSMSI-HPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred --------------------------Ceeeeeeee-cCCCCeEEEecCCCeeEEEEcc
Confidence 456777774 4999999999999999999985
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=2.7e-14 Score=158.45 Aligned_cols=148 Identities=16% Similarity=0.246 Sum_probs=118.5
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 156 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~ 156 (1108)
.|..++|-|||..|+.+. ++.+.++|...|.++..+ .|...|.|++++.+|+++++|+.|..|-||.-.. +|.+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee--
Confidence 799999999999988775 778999999999988877 7899999999999999999999999999998543 24443
Q ss_pred ceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCC
Q 001279 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1108)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1108)
| .|. +.|.|+.|+|. ..+|++++-+.. -+|..+...+..+..
T Consensus 90 -Y---SH~------------D~IQCMsFNP~--~h~LasCsLsdF-glWS~~qK~V~K~ks------------------- 131 (1081)
T KOG1538|consen 90 -Y---SHN------------DAIQCMSFNPI--THQLASCSLSDF-GLWSPEQKSVSKHKS------------------- 131 (1081)
T ss_pred -e---ccC------------CeeeEeecCch--HHHhhhcchhhc-cccChhhhhHHhhhh-------------------
Confidence 2 222 78999999995 444777665554 689877655443321
Q ss_pred CcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
..+|.+++|. .||++++.|..||+|.+-+..
T Consensus 132 ------------s~R~~~CsWt-nDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 132 ------------SSRIICCSWT-NDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred ------------heeEEEeeec-CCCcEEEEeccCceEEeecCC
Confidence 4578889998 999999999999999987543
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.67 E-value=3.6e-15 Score=160.64 Aligned_cols=125 Identities=16% Similarity=0.213 Sum_probs=99.1
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC-CeEEEEecCceEEEEEecCCCCCcccc
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~-~~Lasg~~dG~V~lw~l~~~~~~~~~~ 575 (1108)
+|.+++.+|+|.+||+.+.... + .-.+.|.+|...|+|||.+ .+|++.+.|..|.+||.......
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~--~--------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~---- 244 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPI--F--------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST---- 244 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcc--c--------chhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc----
Confidence 7888999999999999977643 1 1146899999999999965 56788999999999999864221
Q ss_pred ccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEE
Q 001279 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMT 655 (1108)
Q Consensus 576 ~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~ 655 (1108)
.. -....+.++|+|+++|.+||.|+..|.|..||++..+.-. ..+..|...|++++
T Consensus 245 ---------------------~~-l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv--~v~sah~~sVt~va 300 (673)
T KOG4378|consen 245 ---------------------DR-LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV--AVRSAHDASVTRVA 300 (673)
T ss_pred ---------------------ce-eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc--eEeeecccceeEEE
Confidence 11 1236689999999999999999999999999998754221 23455999999999
Q ss_pred eeec
Q 001279 656 WTEF 659 (1108)
Q Consensus 656 fs~~ 659 (1108)
|-+.
T Consensus 301 fq~s 304 (673)
T KOG4378|consen 301 FQPS 304 (673)
T ss_pred eeec
Confidence 9854
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.6e-14 Score=144.40 Aligned_cols=285 Identities=15% Similarity=0.222 Sum_probs=188.9
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc----e-EEeCCCCCCEEEEEEee--CCCEEEEEeCCCcEEE
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE----G-LLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQV 102 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~----~-~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~v 102 (1108)
+..||..=|.|+.|++.|+.+|+|+.|++|+|||.+... + -....|.+.|..+.|.+ -|+.++++|.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 445777889999999999999999999999999963321 1 24557999999999965 5789999999999999
Q ss_pred EEcCCC---------eeeeee-cCCCCeeEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccC
Q 001279 103 WSLESR---------SLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1108)
Q Consensus 103 Wd~~s~---------~~~~~~-~~~~~Itsl~~~~~--~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1108)
|.=... ...+++ ...+.|+.+.|.|. |-.|++++.||.+||+..-. -..+.+ +.+. |+.+..+-
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d-p~nLs~--W~Lq-~Ei~~~~~ 163 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD-PMNLSQ--WTLQ-HEIQNVID 163 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC-cccccc--chhh-hhhhhccC
Confidence 985221 122333 45578999999986 56899999999999987431 122221 2221 22222222
Q ss_pred CCCCCCCCeEEEecccCCCCCE-EEEEECC-----CeEEEEEccCCe--EE---EEeCCCcccccccccCCCCCCCCCcc
Q 001279 171 FPLLSHQPVVGVLPHPNSSGNR-VLIAYEN-----ALVILWDVSEAQ--II---FVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1108)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~-ll~~~~d-----g~V~lWdl~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1108)
.+..+..+..||.|+|+..... |++|+.+ +.++||...++. .. .+.+|
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~--------------------- 222 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH--------------------- 222 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC---------------------
Confidence 2233456789999998654443 5555554 377888765542 22 12222
Q ss_pred cCcCCCCCCCCceeEEEeecCC-C---CEEEEEEccCcEEEEecCCCCCCCC-ccCCCCC-----ceeeeecccccCCcc
Q 001279 240 EGISEHQPEEKEISALCWASSS-G---SILAVGYIDGDILLWNTSTTASTKG-QQTGSRN-----NVVKLELSSAERRLP 309 (1108)
Q Consensus 240 ~~~~~~~~~~~~Vtsl~w~spd-g---~~l~sg~~DG~I~lWd~~~~~~~~~-~~~~~~~-----~~~kl~~~~~~~~~~ 309 (1108)
..+|+.++|. |+ | ..|++++.|| |++|++........ ....... ++.++.. ...+..+
T Consensus 223 ---------~dpI~di~wA-Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~-~~~H~~~ 290 (361)
T KOG2445|consen 223 ---------TDPIRDISWA-PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE-LDDHNGE 290 (361)
T ss_pred ---------CCcceeeeec-cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee-ccCCCCc
Confidence 7789999998 54 3 4799999999 99999985432211 0011111 1222221 2224456
Q ss_pred EEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecC
Q 001279 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT 366 (1108)
Q Consensus 310 i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~ 366 (1108)
+..+.|.- .|..|.+.|+|+ .+++|..+.....+|...+...
T Consensus 291 VWrv~wNm--------tGtiLsStGdDG-------~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 291 VWRVRWNM--------TGTILSSTGDDG-------CVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred eEEEEEee--------eeeEEeecCCCc-------eeeehhhhhhhhheeeeEEecc
Confidence 77776654 467888999998 9999988876666665554443
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=3.6e-14 Score=156.60 Aligned_cols=153 Identities=13% Similarity=0.191 Sum_probs=110.2
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEec-----CCcceEEeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEEc
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGG-----DGIEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~-----~~~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd~ 105 (1108)
-||.+...-|||+-++. .|.+-|..+ +...+-.+..|...|+.+.|+| +...|+++|.|..|+||.+
T Consensus 37 n~I~aS~~flAFn~e~~-------G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~l 109 (1012)
T KOG1445|consen 37 NGIHASADFLAFNIEGE-------GGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKL 109 (1012)
T ss_pred CCcccccceEEEeecCC-------CceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEec
Confidence 35666666677764431 234444443 2334457888999999999999 4578999999999999999
Q ss_pred CCCe--ee----eeecCC-CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001279 106 ESRS--LA----CCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1108)
Q Consensus 106 ~s~~--~~----~~~~~~-~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1108)
..+- .+ ..+++. -.|.|+.|+|...-|+.....|+++|||+.+.. -. +.+.+|. +-
T Consensus 110 p~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk--~~---~el~~h~------------d~ 172 (1012)
T KOG1445|consen 110 PRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQK--TA---VELSGHT------------DK 172 (1012)
T ss_pred CCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCc--ee---ecccCCc------------hh
Confidence 8442 11 111222 368999999988767777788999999987632 21 3355665 77
Q ss_pred eEEEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
|.+..| +.||.+|++++.|..|+|||.+..
T Consensus 173 vQSa~W--seDG~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 173 VQSADW--SEDGKLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred hhcccc--ccCCceEeeecCCcceEEeCCccC
Confidence 999999 459999999999999999998765
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=1e-14 Score=156.16 Aligned_cols=168 Identities=14% Similarity=0.183 Sum_probs=111.0
Q ss_pred EEEeeCCCEEEEEeCC---CcEEEEEcCCCe---ee-eeecCCCCeeEEEEec-------CCCEEEEEeCCCcEEEEEEe
Q 001279 82 LEFLQNQGFLISITND---NEIQVWSLESRS---LA-CCLKWESNITAFSVIS-------GSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 82 l~fs~d~~~L~S~s~d---~~I~vWd~~s~~---~~-~~~~~~~~Itsl~~~~-------~~~~l~vg~~dg~V~vw~~d 147 (1108)
+..-|....++++-.+ ..+.||=.+... ++ +-+-.+....|+.|.. .++|+|+|+-+-.|-||++|
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLD 210 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLD 210 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccc
Confidence 4445543445544432 335555443332 11 1122334455666653 35899999999999999998
Q ss_pred cCCCeeeeeceeecc--ccc----ccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcc
Q 001279 148 ADEGKLFQLPYNISA--DAL----SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDL 221 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~--~~~----~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~ 221 (1108)
..+.-+.. +.+.. ... ++.......|.++|.+++|+-. ..+.|++|+.|.+|++||+.++++...+.|
T Consensus 211 I~d~v~P~--~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~--- 284 (463)
T KOG0270|consen 211 IVDAVLPC--VTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKLWDVDTGKPKSSITH--- 284 (463)
T ss_pred cccccccc--eeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEEEEcCCCCcceehhh---
Confidence 75432221 11110 000 1111223456688999999765 455699999999999999999998776654
Q ss_pred cccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
+.+.|.++.|+.....+|++|+.||++.+.|+..
T Consensus 285 --------------------------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 285 --------------------------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred --------------------------cCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 1789999999988889999999999999999864
No 157
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=1.1e-15 Score=173.48 Aligned_cols=205 Identities=16% Similarity=0.203 Sum_probs=160.7
Q ss_pred eeCCCCCceEEEEcCCC-CEEEEEECCCcEEEEecCC-cceEEeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEEcCC
Q 001279 31 HYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~-~~LA~Gs~dG~I~iw~~~~-~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd~~s 107 (1108)
.--|..+|.++.|++.. .+|.+|+.||.|++||+.. ....+.......|+.++|+| .+..++++.+.|.+++||++.
T Consensus 129 f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq 208 (839)
T KOG0269|consen 129 FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ 208 (839)
T ss_pred hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccC
Confidence 34688899999999854 5899999999999999954 34445555677899999999 467889999999999999987
Q ss_pred Cee--eeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 108 RSL--ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 108 ~~~--~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
-.. .....|.++|.|+.|+|++.|||+|+.|+.|+||++........ .+|.. ..+|.+|.|.
T Consensus 209 p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~---~tInT-------------iapv~rVkWR 272 (839)
T KOG0269|consen 209 PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK---HTINT-------------IAPVGRVKWR 272 (839)
T ss_pred chhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce---eEEee-------------cceeeeeeec
Confidence 543 23448999999999999999999999999999999985333332 12321 1679999999
Q ss_pred cCCCCCEEEEEEC--CCeEEEEEccCCeE--EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC
Q 001279 186 PNSSGNRVLIAYE--NALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1108)
Q Consensus 186 P~~~~~~ll~~~~--dg~V~lWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1108)
|... .+|++++. |-.|.|||+...-+ ..+..| ...++.++|.+.|
T Consensus 273 P~~~-~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH------------------------------~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 273 PARS-YHLATCSMVVDTSVHVWDVRRPYIPYATFLEH------------------------------TDSVTGIAWDSGD 321 (839)
T ss_pred cCcc-chhhhhhccccceEEEEeeccccccceeeecc------------------------------CccccceeccCCC
Confidence 9744 45777665 56899999988644 334444 7788999998877
Q ss_pred CCEEEEEEccCcEEEEecCCC
Q 001279 262 GSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~ 282 (1108)
-..+.+++.||+|..-..++.
T Consensus 322 ~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeEeecCccHHHHhhhhcc
Confidence 889999999999887666554
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=5.8e-15 Score=158.09 Aligned_cols=203 Identities=15% Similarity=0.232 Sum_probs=157.5
Q ss_pred CCCCCceEEEEc-------CCCCEEEEEECCCcEEEEecCCc---ceEE-------------------eCCCCCCEEEEE
Q 001279 33 GIPATASILAFD-------HIQRLLAIATLDGRIKVIGGDGI---EGLL-------------------ISPSQLPYKNLE 83 (1108)
Q Consensus 33 G~~~~is~la~s-------p~~~~LA~Gs~dG~I~iw~~~~~---~~~~-------------------~~~h~~~V~~l~ 83 (1108)
=+|.-+-|+++- -.|.++|+|+-|..|.|||++-. ...+ ..+|+..|-+|.
T Consensus 171 ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls 250 (463)
T KOG0270|consen 171 ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS 250 (463)
T ss_pred eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence 456666676663 23679999999999999998532 1111 124888899999
Q ss_pred EeeC-CCEEEEEeCCCcEEEEEcCCCeeeeeec-CCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceee
Q 001279 84 FLQN-QGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNI 160 (1108)
Q Consensus 84 fs~d-~~~L~S~s~d~~I~vWd~~s~~~~~~~~-~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i 160 (1108)
|..+ ...|+|+|.|.+|++||+.++++..++. |.++|.++.|+|.. .+|++|+.|++|.+.|.... ..... .+++
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-~~s~~-~wk~ 328 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-SNSGK-EWKF 328 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc-cccCc-eEEe
Confidence 9874 4689999999999999999999999986 77899999999875 68999999999999886531 11111 1344
Q ss_pred cccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC-eEEEEeCCCcccccccccCCCCCCCCCcc
Q 001279 161 SADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1108)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1108)
. +.|-.++|+|.... .++++..||+|+-+|++.. +.++.. ++|
T Consensus 329 ~---------------g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~vwt~---------~AH----------- 372 (463)
T KOG0270|consen 329 D---------------GEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPVWTL---------KAH----------- 372 (463)
T ss_pred c---------------cceEEEEecCCCce-eEEEecCCceEEeeecCCCCCceeEE---------Eec-----------
Confidence 4 56999999997544 4899999999999999876 555432 222
Q ss_pred cCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 240 EGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 240 ~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
..+|+++|++.....++++++.|+.+++|++...
T Consensus 373 ---------d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 373 ---------DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred ---------cCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 8899999987666678999999999999999754
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.64 E-value=6e-15 Score=154.54 Aligned_cols=232 Identities=15% Similarity=0.194 Sum_probs=161.0
Q ss_pred Cccccccceeeeee-CCCCCceEEEEcCC-CCEEEEEECCCcEEEEecCCcce----EEeCCCCCCEEEEEEeeC-CCEE
Q 001279 19 LTAADLNLRIAVHY-GIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEG----LLISPSQLPYKNLEFLQN-QGFL 91 (1108)
Q Consensus 19 l~~~~~~~~~~~~~-G~~~~is~la~sp~-~~~LA~Gs~dG~I~iw~~~~~~~----~~~~~h~~~V~~l~fs~d-~~~L 91 (1108)
+...+-..|..+.+ ||...-..|+|||. -..|++|..-+.|++|......- .-+.+|+..|..|+|||. .+.+
T Consensus 194 ~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vf 273 (440)
T KOG0302|consen 194 LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVF 273 (440)
T ss_pred ccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceE
Confidence 33334445555544 88888999999993 34588999999999998754322 234459999999999995 4789
Q ss_pred EEEeCCCcEEEEEcCCC---eeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCe-eeeeceeeccccccc
Q 001279 92 ISITNDNEIQVWSLESR---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK-LFQLPYNISADALSE 167 (1108)
Q Consensus 92 ~S~s~d~~I~vWd~~s~---~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~-l~~~~~~i~~~~~~~ 167 (1108)
+|||.|++|+|||++++ ..+....|.+.|+.++|+..-.+|++|+.||+++||++..-... .+ -.+..|.
T Consensus 274 aScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV---A~fk~Hk--- 347 (440)
T KOG0302|consen 274 ASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV---ATFKYHK--- 347 (440)
T ss_pred EeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc---eeEEecc---
Confidence 99999999999999998 34555688999999999999899999999999999998753322 21 1244444
Q ss_pred ccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCC
Q 001279 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1108)
.+|++|.|||..+.. |++++.|..|.|||+.-..-..-......+. +-.....+-.-+.
T Consensus 348 ---------~pItsieW~p~e~s~-iaasg~D~QitiWDlsvE~D~ee~~~~a~~~-----------L~dlPpQLLFVHq 406 (440)
T KOG0302|consen 348 ---------APITSIEWHPHEDSV-IAASGEDNQITIWDLSVEADEEEIDQEAAEG-----------LQDLPPQLLFVHQ 406 (440)
T ss_pred ---------CCeeEEEeccccCce-EEeccCCCcEEEEEeeccCChhhhccccccc-----------hhcCCceeEEEec
Confidence 889999999986555 9999999999999986532110000000000 0000000000001
Q ss_pred CCCceeEEEeecCCCCEEEEEEccCcEEEEe
Q 001279 248 EEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1108)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd 278 (1108)
-.+.|.-+.|+.....+|++.+.|| +.+|.
T Consensus 407 GQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 407 GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 1667888889855567889998898 45543
No 160
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.1e-12 Score=146.18 Aligned_cols=337 Identities=12% Similarity=0.100 Sum_probs=195.7
Q ss_pred CCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEe
Q 001279 486 VPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNL 565 (1108)
Q Consensus 486 ~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l 565 (1108)
+.+.+++|+++++++|..||.|.+|.-...... .-....+.-|...|++++|+++|.+|.+|+..|.+-+|.+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~-------~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDD-------SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccc-------cccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 455688999999999999999999975442100 0011236788899999999999999999999999999999
Q ss_pred cCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCC
Q 001279 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1108)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~ 645 (1108)
.++.. ..+-...++|..+.+|||+.+.++...|..|.+....+......++-+.
T Consensus 281 ~T~~k--------------------------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 281 ETGKK--------------------------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred cCCCc--------------------------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 88732 2234568899999999999999999999999999887665542222211
Q ss_pred CC--------CCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccce
Q 001279 646 GS--------SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVI 717 (1108)
Q Consensus 646 ~h--------~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~~ 717 (1108)
.. .+-.+.+.++ |.-+.++-.+..|+|..||.-+-..|..
T Consensus 335 ~~~~~~k~~~~~l~t~~~id----------------------pr~~~~vln~~~g~vQ~ydl~td~~i~~---------- 382 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSID----------------------PRTNSLVLNGHPGHVQFYDLYTDSTIYK---------- 382 (792)
T ss_pred CCCccccccccccceeEEEc----------------------CCCCceeecCCCceEEEEeccccceeee----------
Confidence 11 1222333333 3345577788889999998765444422
Q ss_pred eeEEEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcc--cccccccccccCCCCCCCcEEEEEecCeeEEE
Q 001279 718 AISMEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHE--TEHLFSSENACSGESSNDALVLLCCEDSVRLY 795 (1108)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~e~~~~v~ 795 (1108)
|++.+.+.........-.. ....++ .+=-++. +++. +-..-.-.|-+||.|
T Consensus 383 ---~~v~~~n~~~~~~n~~v~i------------------tav~~~~~gs~maT~-E~~~-----d~~~~~~~e~~LKFW 435 (792)
T KOG1963|consen 383 ---LQVCDENYSDGDVNIQVGI------------------TAVARSRFGSWMATL-EARI-----DKFNFFDGEVSLKFW 435 (792)
T ss_pred ---EEEEeecccCCcceeEEee------------------eeehhhccceEEEEe-eeee-----hhhhccCceEEEEEE
Confidence 2222222110000000000 000000 0000000 0000 000001114588999
Q ss_pred ecccccccccceeeeecCC-CcceeeeeeecCCceeEEEEEeecCcEEEeecCCccc-cccccccceeec-eecCccccc
Q 001279 796 SRKSVIQGNNKTVQKVKHK-NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLEL-VMESSLMSILRW-NFKANMDKT 872 (1108)
Q Consensus 796 sl~~~~~g~~~~~~k~~~~-~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~-~~~~~~~~~~~~-~~~~~~~~~ 872 (1108)
.-+...++-.. -.++..+ .-|.-+..+..-+..-..+..-.||.++||.+-+-+= ..+.+.-.|... +||--.+.+
T Consensus 436 ~~n~~~kt~~L-~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a 514 (792)
T KOG1963|consen 436 QYNPNSKTFIL-NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITA 514 (792)
T ss_pred EEcCCcceeEE-EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccc
Confidence 77764333222 2234444 4454455555534443677777899999999944332 233333222221 244445778
Q ss_pred cccC-CCcEEEEcCceeEEEEeecCCCceeccCCCCcchhhhhHHHHHhh
Q 001279 873 ISAD-NGQITLANGSEVAFVNLLAGENEFSILESSPCLHDKVLEAAAAAA 921 (1108)
Q Consensus 873 ~~~s-~Gq~~l~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 921 (1108)
.||| ||-++-++-++...+.-+. + ++.|-|+....+.+.++-.
T Consensus 515 ~~fs~dGslla~s~~~~Itiwd~~--~----~~~l~~~~~~~~~~~~~~~ 558 (792)
T KOG1963|consen 515 LCFSQDGSLLAVSFDDTITIWDYD--T----KNELLCTEGSRNWPIAELL 558 (792)
T ss_pred hhhcCCCcEEEEecCCEEEEecCC--C----hhhhhccccccccchHhHh
Confidence 8999 9976666667655542222 1 1556667766666665543
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.62 E-value=6.5e-14 Score=144.51 Aligned_cols=168 Identities=17% Similarity=0.273 Sum_probs=128.4
Q ss_pred EeCCCCCCEEEEEEee----CCCEEEEEeCCCcEEEEEcCCC---eeeeee---cCCCCeeEEEEecC----CCEEEEEe
Q 001279 71 LISPSQLPYKNLEFLQ----NQGFLISITNDNEIQVWSLESR---SLACCL---KWESNITAFSVISG----SHFMYIGD 136 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~----d~~~L~S~s~d~~I~vWd~~s~---~~~~~~---~~~~~Itsl~~~~~----~~~l~vg~ 136 (1108)
+.-.|+.+|-.++|.+ +...+++....+.+.+++.... +++.++ .++..-..++|.-+ ..++++|+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 3445778999999975 3345666666888999987654 344444 24556666777643 46899999
Q ss_pred CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 137 ~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
.-|.|+|.++.. +++... +-+|. .+|..+.|+|. ..+++++++.|..|++||+++..++.++
T Consensus 113 ~~GvIrVid~~~--~~~~~~---~~ghG------------~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 113 YLGVIRVIDVVS--GQCSKN---YRGHG------------GSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred ceeEEEEEecch--hhhccc---eeccC------------ccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 999999999875 344322 44554 78999999997 6778999999999999999999998887
Q ss_pred CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 217 GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
|.-+ .+..+|.++.|. ++|.+|++++.|.+|++|+++..+
T Consensus 175 GG~e--------------------------gHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 175 GGVE--------------------------GHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred cccc--------------------------cccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhH
Confidence 6511 127899999985 999999999999999999998543
No 162
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=7.3e-14 Score=165.68 Aligned_cols=183 Identities=14% Similarity=0.204 Sum_probs=135.1
Q ss_pred EecCCcceEEeCCCCCCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCCe-------eeeeec-CCCCeeEEEEecCCCEE
Q 001279 62 IGGDGIEGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRS-------LACCLK-WESNITAFSVISGSHFM 132 (1108)
Q Consensus 62 w~~~~~~~~~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I~vWd~~s~~-------~~~~~~-~~~~Itsl~~~~~~~~l 132 (1108)
|+..+..+..+.+|...|..++.++.. .+++|+|.||+|++||...-. ...++. ..++++++.+.+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 888888888899999999999998755 999999999999999986431 122233 45789999999999999
Q ss_pred EEEeCCCcEEEEEEecCC-CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC-EEEEEECCCeEEEEEccCC
Q 001279 133 YIGDENGLMSVIKYDADE-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 133 ~vg~~dg~V~vw~~d~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~-~ll~~~~dg~V~lWdl~~~ 210 (1108)
|+|+.||.|.+.+++... .+.....-+++... ..+.|+++.-.-...+. .|+.+...+.|+.||+...
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~----------~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK----------KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeeccccc----------CCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999988621 11111111222211 12445555332223444 6778888899999999887
Q ss_pred eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...+...+ ..+.+.|+++| .+|.+.+++.|...|.+.+||+.-.
T Consensus 1184 ~~~w~lk~---------------------------~~~hG~vTSi~-idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1184 HDAWRLKN---------------------------QLRHGLVTSIV-IDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhHHhhhc---------------------------CccccceeEEE-ecCCceEEEEecCCceEEEEEeecC
Confidence 66655443 12278899999 5699999999999999999999765
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.5e-14 Score=148.60 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=134.5
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc--------ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1108)
.||.+-|.+|.|+.++++||+|+.|-.+++|+.+.. ..+...+|...|-+|+|.....+|+++..+++|..-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 477888999999999999999999999999997532 123455677899999999888999999999999999
Q ss_pred EcCCCeeeeeecCCC---CeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 104 SLESRSLACCLKWES---NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 104 d~~s~~~~~~~~~~~---~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
|+++.+.+....+.. .|..+..+|..+.+++.+.+|.|.+|+......... ++ +++.. .....
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~--~~-~~AN~-----------~~~F~ 198 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS--LV-LPANS-----------GKNFY 198 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--ee-eecCC-----------Cccce
Confidence 999999998887664 899999999999999999999999999754321211 11 22221 15688
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
.+.|+|. ...+|++++..+-+-|||.+..
T Consensus 199 t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 199 TAEFHPE-TPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeeecCC-CceeEEeccccCCCCceeeccc
Confidence 9999997 5667899999999999998765
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.61 E-value=5.3e-14 Score=151.16 Aligned_cols=153 Identities=15% Similarity=0.056 Sum_probs=103.4
Q ss_pred CcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccc
Q 001279 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1108)
Q Consensus 495 ~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1108)
..++|||+.|++++|||+..-.-+... -+....|+.+|.+..|||++..|++.+.|..|+||+-+--....
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp-------~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~-- 405 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASP-------FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD-- 405 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCc-------ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC--
Confidence 347999999999999998743322110 02356899999999999999999999999999999975110000
Q ss_pred cccccCccceeecccCCcceEEEEEeecC----c--CEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCC
Q 001279 575 LFVLETKSEVHALPEGKISLCRAVFSLVN----S--PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 648 (1108)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~h~----~--~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~ 648 (1108)
.+..+ ..|+ . ..-..+|.|+..++++|-.-..|-|+|-.+++++++.+- ...
T Consensus 406 -------------------~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~--P~~ 463 (498)
T KOG4328|consen 406 -------------------EPLGT-IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD--PES 463 (498)
T ss_pred -------------------Cccce-eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC--ccc
Confidence 00111 1111 1 123457999999999999989999999999997754332 122
Q ss_pred CceEEE-EeeecccCccccCCCCCCCCCCCCCCCcc-EEEEEcCCccEEEEeCC
Q 001279 649 SPIISM-TWTEFKNTHSLAKNPNHSEREVPVNPAEE-VIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 649 ~~V~~l-~fs~~~~~~~~~~~p~~~~~~~~~~p~~~-~L~s~s~Dg~v~v~d~~ 700 (1108)
..|.++ .|. |-+. +++.++.-|.|+||--+
T Consensus 464 ~tI~~vn~~H----------------------P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 464 STIPSVNEFH----------------------PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccceeec----------------------ccccceeccCCccceEEEEecC
Confidence 344444 455 3355 45555566889988654
No 165
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=7.2e-15 Score=153.96 Aligned_cols=160 Identities=18% Similarity=0.256 Sum_probs=124.6
Q ss_pred cccCCCC-cEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeC-CCeEEEEecCceEEEEEec
Q 001279 489 TKCHSVD-RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NSSLAVGNEFGLVYIYNLN 566 (1108)
Q Consensus 489 ~~~s~~~-~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d-~~~Lasg~~dG~V~lw~l~ 566 (1108)
++++|-. ..++||---+.|++|...++.-. +.+..+.+|..+|-.|+|||. ...|++|+.||+|+|||++
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~--------vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR 288 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK--------VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR 288 (440)
T ss_pred eecccccccccccCccccceEeeeeccCcee--------ecCccccccccchhhhccCCccCceEEeeecCceEEEEEec
Confidence 3455522 13677766678999998877643 122346789999999999995 5689999999999999999
Q ss_pred CCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCC
Q 001279 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1108)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~ 646 (1108)
..+.. .|+. .+.|.+-|..+.|+-.-.+||+|++||+++|||+++-+.-..+..+.-
T Consensus 289 s~~~~----------------------~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 289 SGPKK----------------------AAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY 345 (440)
T ss_pred CCCcc----------------------ceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe
Confidence 87432 1333 389999999999999888999999999999999986433222234556
Q ss_pred CCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
|..+|+++.|+|.. ...+++++.|.+|++||..
T Consensus 346 Hk~pItsieW~p~e---------------------~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 346 HKAPITSIEWHPHE---------------------DSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ccCCeeEEEecccc---------------------CceEEeccCCCcEEEEEee
Confidence 99999999999752 4579999999999999975
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.59 E-value=5.6e-11 Score=139.10 Aligned_cols=354 Identities=19% Similarity=0.360 Sum_probs=237.8
Q ss_pred EEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe-eeeeecC-C-CCeeEEEE-
Q 001279 50 LAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCLKW-E-SNITAFSV- 125 (1108)
Q Consensus 50 LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~-~~~~~~~-~-~~Itsl~~- 125 (1108)
......+..+.++.... .....|...+..+.|.+++..++..+.|+.+.+|+..... .+..+.. . ..+..+.+
T Consensus 42 ~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (466)
T COG2319 42 LLALLSDSLVSLPDLSS---LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118 (466)
T ss_pred EEeecccccccccccch---heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE
Confidence 33333444444444333 4566788999999999999999999999999999999886 4444432 3 36777777
Q ss_pred ecCCC-EEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-CCeE
Q 001279 126 ISGSH-FMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALV 202 (1108)
Q Consensus 126 ~~~~~-~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V 202 (1108)
.+++. +++..+. ++.+++|++... .... ..+..|. ..|..+.|+| ++..++.+.. ++.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~---~~~~~~~------------~~v~~~~~~~--~~~~~~~~~~~~~~~ 180 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTP-GKLI---RTLEGHS------------ESVTSLAFSP--DGKLLASGSSLDGTI 180 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCC-CeEE---EEEecCc------------ccEEEEEECC--CCCEEEecCCCCCce
Confidence 77777 4454444 899999998741 1222 2244444 6788999998 4556777775 9999
Q ss_pred EEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEEEEEccCcEEEEecC
Q 001279 203 ILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 203 ~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~DG~I~lWd~~ 280 (1108)
++|++..++.+. ..+| ...|+++.|. |++. .+++++.|+.|++||..
T Consensus 181 ~~~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 181 KLWDLRTGKPLSTLAGH------------------------------TDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred EEEEcCCCceEEeeccC------------------------------CCceEEEEEc-CCcceEEEEecCCCcEEEEECC
Confidence 999999865543 3333 7789999987 9998 55555999999999664
Q ss_pred CCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccccccccccee
Q 001279 281 TTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1108)
Q Consensus 281 ~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~ 360 (1108)
.+. .... .+ .+..
T Consensus 230 ~~~------------~~~~------------~~-------------------~~~~------------------------ 242 (466)
T COG2319 230 TGK------------LLRS------------TL-------------------SGHS------------------------ 242 (466)
T ss_pred CCc------------EEee------------ec-------------------CCCC------------------------
Confidence 210 0000 00 0000
Q ss_pred eeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEE
Q 001279 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVA 440 (1108)
Q Consensus 361 ~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 440 (1108)
...
T Consensus 243 -------------------------------------~~~---------------------------------------- 245 (466)
T COG2319 243 -------------------------------------DSV---------------------------------------- 245 (466)
T ss_pred -------------------------------------cce----------------------------------------
Confidence 000
Q ss_pred EEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeE
Q 001279 441 EFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLI 520 (1108)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~ 520 (1108)
...+++++.++++++.|+.+++||....... +
T Consensus 246 -----------------------------------------------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~ 277 (466)
T COG2319 246 -----------------------------------------------VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-L 277 (466)
T ss_pred -----------------------------------------------eEeECCCCCEEEEecCCCcEEEeeecCCCcE-E
Confidence 0013334457789999999999999866631 1
Q ss_pred eeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEE--
Q 001279 521 CALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAV-- 598 (1108)
Q Consensus 521 ~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-- 598 (1108)
. . ..+|...|.++.|+|++..+++++.|+.+++|++..... ...
T Consensus 278 ~--------~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------------------~~~~~ 323 (466)
T COG2319 278 R--------T-LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-------------------------LSSLT 323 (466)
T ss_pred E--------E-EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-------------------------EEEee
Confidence 1 1 246788999999999999998898899999997766521 112
Q ss_pred EeecCcCEEEEEEcCCCCEEEEE-eCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCC
Q 001279 599 FSLVNSPVRALQFTSSGAKLAVG-FECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVP 677 (1108)
Q Consensus 599 ~~~h~~~Vtslafspdg~~LavG-s~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~ 677 (1108)
...|...|..+.|++++..++++ ..|+.+.+|++......... . ....+..+.|.+ . .
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~-~-~--------------- 382 (466)
T COG2319 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL---E-GHSNVLSVSFSP-D-G--------------- 382 (466)
T ss_pred ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEe---c-CCceEEEEEECC-C-C---------------
Confidence 23677789999994343556666 68899999999888722211 1 122278888884 3 2
Q ss_pred CCCCccEEE-EEcCCccEEEEeCCCcceecCC
Q 001279 678 VNPAEEVII-VLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 678 ~~p~~~~L~-s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
..+ .+..++.+.+||...+..+...
T Consensus 383 ------~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 383 ------RVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred ------CEEEEecCCCceEEEecccCeeeeec
Confidence 233 4789999999999876665443
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.1e-13 Score=157.85 Aligned_cols=156 Identities=14% Similarity=0.145 Sum_probs=115.8
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCC--eEEEEEEeCCC-eEEEEecCceEEEEEecCCC
Q 001279 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP--VSTLSFCFINS-SLAVGNEFGLVYIYNLNGSL 569 (1108)
Q Consensus 493 ~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~--Vt~lafs~d~~-~Lasg~~dG~V~lw~l~~~~ 569 (1108)
..++++++|..||+||+||.......... ...+.|+.. |..+.+-+.|- .|++|+.+|.|++||+....
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v--------~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLV--------CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccc--------eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 34679999999999999998765533111 125567666 99999998765 49999999999999998853
Q ss_pred CCccccccccCccceeecccCCcceEEEEEeecC--c-CEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE---EEeec
Q 001279 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN--S-PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL---FFTDD 643 (1108)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~--~-~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~---~~~~~ 643 (1108)
.+. ..+...|- + .+|+|..++....+|+|+. +.|+||++.+..+- +....
T Consensus 1291 ~e~-----------------------~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1291 KET-----------------------FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF 1346 (1387)
T ss_pred ccc-----------------------cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc
Confidence 221 12223332 4 5999999999999999999 99999999876432 22222
Q ss_pred CCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCc
Q 001279 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1108)
Q Consensus 644 ~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g 702 (1108)
+..-.+.+.+|.|.|. ..+|++|..|..|.||..+.+
T Consensus 1347 ~~q~~gs~scL~FHP~----------------------~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPH----------------------RLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCcCCCcceeeecch----------------------hHhhhhccCCceEEEeecCCc
Confidence 2234567899999965 667999999999999987643
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.58 E-value=2.2e-12 Score=143.48 Aligned_cols=274 Identities=15% Similarity=0.145 Sum_probs=186.5
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEec-CCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~ 115 (1108)
.|..+||-|||..|.++. +.++.|||. ++.....+.+|...|.+++|+.||.+++|++.|..|.+|+-.- +-+-.++
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeec
Confidence 688999999999988886 578999999 5666668999999999999999999999999999999999643 3345668
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEE
Q 001279 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1108)
Q Consensus 116 ~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1108)
|...|.|++|+|-...|++++-+. .-+|.-+. ..+. .|++. ..|.+.+| ..||++++.
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsd-FglWS~~q--K~V~--K~kss---------------~R~~~CsW--tnDGqylal 149 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQ--KSVS--KHKSS---------------SRIICCSW--TNDGQYLAL 149 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhh-ccccChhh--hhHH--hhhhh---------------eeEEEeee--cCCCcEEEE
Confidence 999999999999999999887543 23566442 1222 13332 56899999 559999999
Q ss_pred EECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC----CEEEEEEcc
Q 001279 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG----SILAVGYID 271 (1108)
Q Consensus 196 ~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg----~~l~sg~~D 271 (1108)
|-.||+|.+-+-.+...+.+.. |+++ ..+|.++||.+..| ..+++..-.
T Consensus 150 G~~nGTIsiRNk~gEek~~I~R-------------pgg~--------------Nspiwsi~~~p~sg~G~~di~aV~DW~ 202 (1081)
T KOG1538|consen 150 GMFNGTISIRNKNGEEKVKIER-------------PGGS--------------NSPIWSICWNPSSGEGRNDILAVADWG 202 (1081)
T ss_pred eccCceEEeecCCCCcceEEeC-------------CCCC--------------CCCceEEEecCCCCCCccceEEEEecc
Confidence 9999999888754433222211 0111 67899999963333 467777777
Q ss_pred CcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccc
Q 001279 272 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 351 (1108)
Q Consensus 272 G~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~ 351 (1108)
.++.++.+....-.+. ....+..+|. ....+|.+++.||.++ .+++-..
T Consensus 203 qTLSFy~LsG~~Igk~---------------------r~L~FdP~Ci---sYf~NGEy~LiGGsdk-------~L~~fTR 251 (1081)
T KOG1538|consen 203 QTLSFYQLSGKQIGKD---------------------RALNFDPCCI---SYFTNGEYILLGGSDK-------QLSLFTR 251 (1081)
T ss_pred ceeEEEEecceeeccc---------------------ccCCCCchhh---eeccCCcEEEEccCCC-------ceEEEee
Confidence 7888877754311100 0000111222 2556788999999886 4444333
Q ss_pred ccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEec
Q 001279 352 SGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDN 405 (1108)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~ 405 (1108)
.+...- ..-..+..+|.+...|.+. .+.+.+.+|.+..|..
T Consensus 252 ~GvrLG-----Tvg~~D~WIWtV~~~PNsQ--------~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 252 DGVRLG-----TVGEQDSWIWTVQAKPNSQ--------YVVVGCQDGTIACYNL 292 (1081)
T ss_pred cCeEEe-----eccccceeEEEEEEccCCc--------eEEEEEccCeeehhhh
Confidence 331110 1112455899999998865 4566667777766553
No 169
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.2e-13 Score=150.10 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=137.4
Q ss_pred CCCCceEEEEcC------------CCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeC---C-CEEEEEeC
Q 001279 34 IPATASILAFDH------------IQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQN---Q-GFLISITN 96 (1108)
Q Consensus 34 ~~~~is~la~sp------------~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d---~-~~L~S~s~ 96 (1108)
|++.|+.+.|.| .+-+||++...|+|.|||.....+. .+.+|..+|..++|.+. . ..|+....
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ 133 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG 133 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence 345556666643 3458899999999999999665554 55667789999999874 2 57888899
Q ss_pred CCcEEEEEcCCCeeeeeecCCCC-eeEEEEecC-CCEEEEEeCCCcEEEEEEecC-----CCeeeeeceeeccc--cc--
Q 001279 97 DNEIQVWSLESRSLACCLKWESN-ITAFSVISG-SHFMYIGDENGLMSVIKYDAD-----EGKLFQLPYNISAD--AL-- 165 (1108)
Q Consensus 97 d~~I~vWd~~s~~~~~~~~~~~~-Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~-----~~~l~~~~~~i~~~--~~-- 165 (1108)
.++|.+||..+|+.+..+..... ..|+.++|- .+++.+-+..|.|.+.++-.. .++.. .|... ++
T Consensus 134 ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~----qI~sd~Sdl~~ 209 (1062)
T KOG1912|consen 134 SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF----QITSDHSDLAH 209 (1062)
T ss_pred CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE----EEecCccchhh
Confidence 99999999999999999876654 556999984 456666666776666654321 12222 23222 11
Q ss_pred ---ccccCCCCC-CCCC------eEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCC
Q 001279 166 ---SEKAGFPLL-SHQP------VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1108)
Q Consensus 166 ---~~~~~~~~~-~~~~------V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1108)
..+.+.... .+.. ...++|+|.. .+.+++.+..+. .|+|++-...+....-
T Consensus 210 lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prel-lv~dle~~~~l~vvpi----------------- 270 (1062)
T KOG1912|consen 210 LERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPREL-LVFDLEYECCLAVVPI----------------- 270 (1062)
T ss_pred hhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccce-EEEcchhhceeEEEEe-----------------
Confidence 111121111 1111 2245678874 445888888886 6889887765543311
Q ss_pred CCcccCcCCCCCCCCceeEEEeecCCC--CEEEEEEccCcEEEEecCC
Q 001279 236 STFLEGISEHQPEEKEISALCWASSSG--SILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~spdg--~~l~sg~~DG~I~lWd~~~ 281 (1108)
+.+.+.=+.|. |++ ..|++++.||.+.+|-.+.
T Consensus 271 ------------er~~akfv~vl-P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 271 ------------ERGGAKFVDVL-PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ------------ccCCcceeEec-cCCCcceEEEEecCCeEEEEEeec
Confidence 02333334554 554 5799999999999998764
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.57 E-value=2.5e-13 Score=140.23 Aligned_cols=300 Identities=15% Similarity=0.177 Sum_probs=195.8
Q ss_pred CCcEEEEEecCCcEEEEeCCCCc-eeeEeeeccccceeeccCCCCCeEEEEEEeCC----CeEEEEecCceEEEEEecCC
Q 001279 494 VDRVYLAGYHDGSVRIWDATYPV-FKLICALDAEVQGIEVAGSRAPVSTLSFCFIN----SSLAVGNEFGLVYIYNLNGS 568 (1108)
Q Consensus 494 ~~~llatgs~DGtVriWd~~~~~-l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~----~~Lasg~~dG~V~lw~l~~~ 568 (1108)
..++++|.+.+ +|.++...... .+.+.... -.+|......++|+-|. .+||.|+.-|.|+|.|+...
T Consensus 54 e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~-------D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~ 125 (385)
T KOG1034|consen 54 EPQVFATVGGN-RVTIYECPGDGGIRLLQSYA-------DEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG 125 (385)
T ss_pred CCceEEEeCCc-EEEEEEECCccceeeeeecc-------CCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh
Confidence 34467776654 57777765433 11111110 11466667777887643 47999999999999999886
Q ss_pred CCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEEeecCCCC
Q 001279 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 647 (1108)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg-~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h 647 (1108)
++...+.+|...|..+.|.|+. ++|++|+.|-+|++||+++..++.-..-+.||
T Consensus 126 -------------------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH 180 (385)
T KOG1034|consen 126 -------------------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH 180 (385)
T ss_pred -------------------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc
Confidence 3567788999999999999965 89999999999999999999999777777899
Q ss_pred CCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCccee----cCCCCcccccceeeEEEE
Q 001279 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI----SSSPWHLKKKVIAISMEV 723 (1108)
Q Consensus 648 ~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l----~~~~~~~~~~~~~~~~~~ 723 (1108)
...|.++.|+ +++..+++++.|.+|.+|+...-++- .+.++.|++..
T Consensus 181 rdeVLSvD~~----------------------~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~------- 231 (385)
T KOG1034|consen 181 RDEVLSVDFS----------------------LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT------- 231 (385)
T ss_pred cCcEEEEEEc----------------------CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc-------
Confidence 9999999999 55788999999999999998754322 11112222111
Q ss_pred ecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecCeeEEEecccc---
Q 001279 724 IAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSV--- 800 (1108)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~~~~v~sl~~~--- 800 (1108)
-|.+..+. . + |+.+ ..+-|.+-|.=++|-. +-.+--.||+++-.|---.+
T Consensus 232 -----~pfpt~~~--~-f----------p~fs------t~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~ 284 (385)
T KOG1034|consen 232 -----RPFPTPKT--H-F----------PDFS------TTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEES 284 (385)
T ss_pred -----CcCCcccc--c-c----------cccc------ccccccchHHHHHHHh---hheeecccCceEEEEecchhhhh
Confidence 00110000 0 0 0000 0111555554444432 22333455778888843111
Q ss_pred c------ccccceeeeecCCCcc-eeeeeeecCCceeEEEEEeecCcEEEeecCCccccccccccceeeceecCcccccc
Q 001279 801 I------QGNNKTVQKVKHKNRC-CWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTI 873 (1108)
Q Consensus 801 ~------~g~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1108)
| .+..+.+...++ +.| .|-.-|..|+.+-+||++.|.|.|++|.|.+-++...+.+. ++--..-++.+
T Consensus 285 ~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~----~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 285 IHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT----HSKSGSTVRQT 359 (385)
T ss_pred hhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE----eccccceeeee
Confidence 0 111222322332 344 78888888999999999999999999999999987544332 12223348889
Q ss_pred ccC-CCc-EEEEcCce
Q 001279 874 SAD-NGQ-ITLANGSE 887 (1108)
Q Consensus 874 ~~s-~Gq-~~l~~~~e 887 (1108)
||| ||. ++||+.+.
T Consensus 360 sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDG 375 (385)
T ss_pred eecccCcEEEEEeCCC
Confidence 999 998 55566654
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=1.5e-13 Score=137.78 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=64.2
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec--CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~--~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
.+.+|.+.|+++.|-.+ .+|+++...|.|++|++++.+.+..+. +...|+.+...|+ ..+.+-..|+.+.+|+++-
T Consensus 9 vLRp~~~~v~s~~fqa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccc-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 44589999999999888 469999999999999999998777664 5567999988887 5677888999999999874
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=7.2e-14 Score=140.04 Aligned_cols=154 Identities=26% Similarity=0.306 Sum_probs=121.2
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeecc--ccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccc
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDA--EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~--~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1108)
++++|.++|.|-+||++.+.. +..++. ++. .....|..+|.++.|.+.-..=++|+.+..+.+|.+.......
T Consensus 167 lllaGyEsghvv~wd~S~~~~--~~~~~~~~kv~-~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl-- 241 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDK--IIQLPQSSKVE-SPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL-- 241 (323)
T ss_pred EEEEeccCCeEEEEEccCCce--eeccccccccc-cchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc--
Confidence 788999999999999998742 222222 111 1356889999999999876667888989999999988753211
Q ss_pred cccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEE
Q 001279 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1108)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l 654 (1108)
+........+-.|..+.+-||++.+|+++.||.||||..++...+ ..+.-|+..|.++
T Consensus 242 -------------------q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL---AVLkyHsagvn~v 299 (323)
T KOG0322|consen 242 -------------------QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL---AVLKYHSAGVNAV 299 (323)
T ss_pred -------------------cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch---hhhhhhhcceeEE
Confidence 112233344566899999999999999999999999999998887 4566799999999
Q ss_pred EeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 655 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 655 ~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
+|+ |+-++++++++|+.|.+|+.
T Consensus 300 Afs----------------------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFS----------------------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeC----------------------CCCchhhhccCCceEEeeec
Confidence 999 55678999999999999984
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=4.4e-13 Score=156.57 Aligned_cols=166 Identities=19% Similarity=0.326 Sum_probs=112.9
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec----CCCCeeEEEEec--CCCEEEEEeCCCcEEEEE-Eec--
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK----WESNITAFSVIS--GSHFMYIGDENGLMSVIK-YDA-- 148 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~----~~~~Itsl~~~~--~~~~l~vg~~dg~V~vw~-~d~-- 148 (1108)
+-+.+.|+|-...++++.....|+|||++.++.+..+. ....|+.+.+.. +..++++|+.||.|+||+ |..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 45678888887889998878889999999999887773 346799998875 346899999999999998 332
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCccccccccc
Q 001279 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVV 228 (1108)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~ 228 (1108)
..-+++..-..+.+.. +...... .-+.|+-. .| +|++++.-..|+|||.+...+..-.-.
T Consensus 1146 ~~~eLVTaw~~Ls~~~-------~~~r~~~-~v~dWqQ~-~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~---------- 1205 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQL-------PGARGTG-LVVDWQQQ-SG-HLLVTGDVRSIRIWDAHKEQVVADIPY---------- 1205 (1387)
T ss_pred CCceeEEeeccccccC-------ccCCCCC-eeeehhhh-CC-eEEecCCeeEEEEEecccceeEeeccc----------
Confidence 1223332101111110 1111112 44567543 34 488888888999999988766533211
Q ss_pred CCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
+ ...-||++.-....|+.|++|..||.|++||...
T Consensus 1206 ----~--------------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1206 ----G--------------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred ----C--------------CCccceeecccccCCceEEEeecCCceEEeeccc
Confidence 0 1455777764446689999999999999999864
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.56 E-value=7e-13 Score=136.51 Aligned_cols=200 Identities=12% Similarity=0.138 Sum_probs=145.0
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCcc-------eEEeC-------CCCCCEEEEEEe-------eCCCEEEEEeCCC
Q 001279 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIE-------GLLIS-------PSQLPYKNLEFL-------QNQGFLISITNDN 98 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-------~~~~~-------~h~~~V~~l~fs-------~d~~~L~S~s~d~ 98 (1108)
.+.|+|||..|.+-+.|..+.+|+++... ..... .....|..-+|- |+..++++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 46799999999999999999999984321 11111 123356666664 4556788888899
Q ss_pred cEEEEEcCCCeeeeeec---CCC---CeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001279 99 EIQVWSLESRSLACCLK---WES---NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1108)
Q Consensus 99 ~I~vWd~~s~~~~~~~~---~~~---~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1108)
-|++||.-++++.+++. |.. .-.+++|+|++.+|+.|.. ..|+|++.......... |....+..
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~v--y~t~~~~k------- 203 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPV--YTTVTKGK------- 203 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcc--hhhhhccc-------
Confidence 99999999999887773 333 3568999999999998865 45899887543333322 21111100
Q ss_pred CCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCc
Q 001279 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1108)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1108)
....+-+.+++|+|. +.+.+++++....+-|+.-...+...+ .|| .+.
T Consensus 204 ~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh------------------------------~gG 252 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH------------------------------GGG 252 (406)
T ss_pred ccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeeccc------------------------------CCC
Confidence 001156889999998 454599999999999999888876554 455 788
Q ss_pred eeEEEeecCCCCEEEEEEc-cCcEEEEecCC
Q 001279 252 ISALCWASSSGSILAVGYI-DGDILLWNTST 281 (1108)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~-DG~I~lWd~~~ 281 (1108)
||.++|. ++|+.|++|.. |-.|..||+..
T Consensus 253 vThL~~~-edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 253 VTHLQWC-EDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeEEec-cCcCeecccccCCCeEEEEeehh
Confidence 9999996 99999999985 77899999963
No 175
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.54 E-value=9.4e-14 Score=149.83 Aligned_cols=202 Identities=10% Similarity=0.177 Sum_probs=163.4
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~ 115 (1108)
...|++......++++|+..|.|+|||+....+ .++..|+..|+++.+.....||++++..|.|.|-.+.++.....+.
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 556777777779999999999999999975544 3788899999999999988999999999999999999999888887
Q ss_pred CC-C-CeeEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 116 WE-S-NITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 116 ~~-~-~Itsl~~~~~~~-~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
+. + .|.-+.+++..+ +|.+++.+|.|.+||.......+. ....| ..+..+|+|+|. +..+
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~----~~~~H------------sAP~~gicfsps-ne~l 223 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH----ASEAH------------SAPCRGICFSPS-NEAL 223 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc----hhhhc------------cCCcCcceecCC-ccce
Confidence 66 3 455889998876 556788999999999874321111 11222 277889999998 5666
Q ss_pred EEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC
Q 001279 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1108)
Q Consensus 193 ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG 272 (1108)
|++.+.|..|.+||....+......+ ..+.++++| +++|.+|+.|...|
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y------------------------------~~Plstvaf-~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTY------------------------------SHPLSTVAF-SECGTYLCAGNSKG 272 (673)
T ss_pred EEEecccceEEEeecccccccceeee------------------------------cCCcceeee-cCCceEEEeecCCc
Confidence 89999999999999998766544433 567888996 59999999999999
Q ss_pred cEEEEecCCCCCCC
Q 001279 273 DILLWNTSTTASTK 286 (1108)
Q Consensus 273 ~I~lWd~~~~~~~~ 286 (1108)
.|..||+.....+.
T Consensus 273 ~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 273 ELIAYDMRSTKAPV 286 (673)
T ss_pred eEEEEecccCCCCc
Confidence 99999998776554
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=3.1e-12 Score=135.99 Aligned_cols=164 Identities=14% Similarity=0.218 Sum_probs=124.0
Q ss_pred CCCEEEEEEeeCCC-EEEEEeCCCcEEEEEcCCCe---------eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEE
Q 001279 76 QLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRS---------LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVI 144 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~-~L~S~s~d~~I~vWd~~s~~---------~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw 144 (1108)
..||..+.|.++.. +|+|++.|..|++|-+.... ++..+ .|...|+++.|+|++..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35899999999876 99999999999999886542 23344 688899999999999999999999999999
Q ss_pred EEecCC-----Ceeeeec--eeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe-
Q 001279 145 KYDADE-----GKLFQLP--YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG- 216 (1108)
Q Consensus 145 ~~d~~~-----~~l~~~~--~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~- 216 (1108)
...... ....+.+ |... ..-..+...|+.++|.| ++..+.+++.|..+++||+..+.+....
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~--------k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVK--------KVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred EecCcCCccccchhhhCccceEEE--------EEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEeecc
Confidence 976210 0000000 0000 00112337799999988 7888999999999999999999887653
Q ss_pred CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 217 GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
+| ..-|..++|. |-++++++-+.|...+.+.+.
T Consensus 163 dh------------------------------~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 163 DH------------------------------EHYVQGVAWD-PLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cc------------------------------ccccceeecc-hhhhhhhhhccCcccceeeee
Confidence 34 6678889997 999999999888866655554
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.6e-13 Score=151.40 Aligned_cols=133 Identities=18% Similarity=0.251 Sum_probs=98.8
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC--------eeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--------SLACCL-KWESNITAFSVISGSHFMYIGDENGLM 141 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~--------~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V 141 (1108)
.+..|...|+.++|.+-...|++++.|++|++|+++.. +.+.++ .|.++|.|+++.+.+.++++|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 44457888999999999999999999999999999432 233444 799999999999999999999999999
Q ss_pred EEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE
Q 001279 142 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1108)
Q Consensus 142 ~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~ 212 (1108)
+.|++... . .||.... .....+.-.++.+.|..+++|+. ..+|++++.||+|++|+......
T Consensus 369 ~~w~~p~n-~----dp~ds~d--p~vl~~~l~Ghtdavw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 369 RCWNLPPN-Q----DPDDSYD--PSVLSGTLLGHTDAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeccCCC-C----CcccccC--cchhccceeccccceeeeeeccc--ccceeeecCCceEEeeccCCcCc
Confidence 99976421 1 0111110 00000111233488999999884 55699999999999999877654
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.51 E-value=3.1e-12 Score=131.82 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=122.2
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCCce-eeEeeeccccceeeccCCCCCeEEEEEEeCC-CeEEEEecCceEEEEEe
Q 001279 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVF-KLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNL 565 (1108)
Q Consensus 488 ~~~~s~~~~llatgs~DGtVriWd~~~~~l-~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~-~~Lasg~~dG~V~lw~l 565 (1108)
+++|+|||..|++|. ..+||++|+..+.. -..+....+ .-.+-.+-|.|++|+|-. ..+++|+....+-||..
T Consensus 163 sL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~----~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 163 SLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK----GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred eEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc----ccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 348999999999876 56899999954432 111111100 011334578999999954 59999999999999998
Q ss_pred cCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeC-CCeEEEEEccCc-eEEEEeec
Q 001279 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE-CGRVAVLDMNLL-SVLFFTDD 643 (1108)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~-dG~V~vwd~~~~-~~~~~~~~ 643 (1108)
... .++..+-+|.+.||.|+|+++|+.|.+|.. |-.|-.||++.. .+++ .
T Consensus 238 ~~~-------------------------~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~---~ 289 (406)
T KOG2919|consen 238 DGR-------------------------RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY---A 289 (406)
T ss_pred CCC-------------------------CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh---h
Confidence 775 245667799999999999999999999974 667999999864 3343 3
Q ss_pred CCCCCC-ceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC-cc
Q 001279 644 ISGSSS-PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS-EN 703 (1108)
Q Consensus 644 ~~~h~~-~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~-g~ 703 (1108)
+.+|.. .=.++.|.- +|.+++|++|+.||.|.+||... |+
T Consensus 290 L~rhv~~TNQRI~FDl--------------------d~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDL--------------------DPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhccCccceEEEec--------------------CCCCceeeccCCCccEEEEecCCCCC
Confidence 445665 566788883 37799999999999999999876 55
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.51 E-value=1.8e-12 Score=151.10 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=82.5
Q ss_pred CccccCCCCcEEEEEecCCcEEEEeCC-CCceeeEeeeccccceeeccCCCCCeEEEEEEeCC-CeEEEEecCceEEEEE
Q 001279 487 PITKCHSVDRVYLAGYHDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYN 564 (1108)
Q Consensus 487 ~~~~~s~~~~llatgs~DGtVriWd~~-~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~-~~Lasg~~dG~V~lw~ 564 (1108)
.++.++|-...++..+.|.+||||.-. ..... ..+..+...|++++|||.. ..+++++.||.+.|||
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl-----------~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL-----------LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcc-----------hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 333445544444444449999999866 22211 2244555679999999965 5678888899999999
Q ss_pred ecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001279 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1108)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~ 634 (1108)
+.....+ ++.....+....+.+.|++.|++|++|+..|++.+|++..
T Consensus 471 Ll~~~~~-----------------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 471 LLQDDEE-----------------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhccccC-----------------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9876432 2333344467778889999999999999999999999964
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.1e-13 Score=164.37 Aligned_cols=132 Identities=20% Similarity=0.319 Sum_probs=95.2
Q ss_pred eeeeecCCCCeeEEEEecCCCE----EEEEeCCCcEEEEEEecC--CCeeeeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 110 LACCLKWESNITAFSVISGSHF----MYIGDENGLMSVIKYDAD--EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 110 ~~~~~~~~~~Itsl~~~~~~~~----l~vg~~dg~V~vw~~d~~--~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
.+.+++-..+-+.++|.+.+.. ++.|.+||+|-+|+-+.. .... +.+.--..|.+.|.++.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~-------------~~la~~~~h~G~V~gLD 123 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE-------------EVLATKSKHTGPVLGLD 123 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcch-------------HHHhhhcccCCceeeee
Confidence 3445555567788888877654 899999999999987641 1111 11111233458999999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC
Q 001279 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1108)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1108)
|+|. .++.|++|..||.|.|||+..-+.-...+. ......|.++.|.-...+
T Consensus 124 fN~~-q~nlLASGa~~geI~iWDlnn~~tP~~~~~---------------------------~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 124 FNPF-QGNLLASGADDGEILIWDLNKPETPFTPGS---------------------------QAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred cccc-CCceeeccCCCCcEEEeccCCcCCCCCCCC---------------------------CCCcccceEeccchhhhH
Confidence 9996 566899999999999999987443222211 111678999999866677
Q ss_pred EEEEEEccCcEEEEecCCC
Q 001279 264 ILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~~ 282 (1108)
.|++++.+|...+||++..
T Consensus 176 ILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred HhhccCCCCCceeccccCC
Confidence 8999999999999999743
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.50 E-value=1.5e-12 Score=138.30 Aligned_cols=183 Identities=15% Similarity=0.126 Sum_probs=134.1
Q ss_pred CCccccCCCCc-EEEEEecCCcEEEEeCCCCceeeEeeecccc-ceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEE
Q 001279 486 VPITKCHSVDR-VYLAGYHDGSVRIWDATYPVFKLICALDAEV-QGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIY 563 (1108)
Q Consensus 486 ~~~~~~s~~~~-llatgs~DGtVriWd~~~~~l~~~~~l~~~~-~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw 563 (1108)
+..+.++++.. .++||+.|..||||-+.......-- ..+ ....+..|..+|+++.|+|+|..||+|+++|.|.+|
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 33445666655 9999999999999987654422100 000 012478999999999999999999999999999999
Q ss_pred EecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeec
Q 001279 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1108)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~ 643 (1108)
....... +..++ + .-...+.+.....+.+|...|..++|+|+++++++|+.|..+++||+..+.++ ..
T Consensus 93 k~~~~~~-----~~~d~--e--~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~---~~ 160 (434)
T KOG1009|consen 93 KQGDVRI-----FDADT--E--ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL---AI 160 (434)
T ss_pred EecCcCC-----ccccc--h--hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE---ee
Confidence 9874211 00000 0 00012234455677889999999999999999999999999999999999988 45
Q ss_pred CCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCccee
Q 001279 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 705 (1108)
Q Consensus 644 ~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l 705 (1108)
+.+|..-|..++|.+. ..++++-+.|....+++...-.++
T Consensus 161 ~~dh~~yvqgvawDpl----------------------~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPL----------------------NQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred ccccccccceeecchh----------------------hhhhhhhccCcccceeeeeeeeee
Confidence 6779999999999965 566788888877666665543333
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=5.4e-11 Score=135.55 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=94.2
Q ss_pred EEeCCCcEEEEEcCC-Ce--eeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001279 93 SITNDNEIQVWSLES-RS--LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1108)
Q Consensus 93 S~s~d~~I~vWd~~s-~~--~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1108)
+...++.|.+||+.+ ++ .+..+...+....++++|++++|++++ .++.|.+|+++ .++.+... ..++.
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~-~~~~~------ 78 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFA-AESPL------ 78 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEe-eeecC------
Confidence 335689999999964 33 445555567788899999999998875 47889999987 34554321 11110
Q ss_pred cCCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEccCCe-EEEEeCCCcccccccccCCCCCCCCCcccCcCCCC
Q 001279 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1108)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1108)
.+.+..++|+| ++++|+++. .++.|.+||+.+.. ....... + .
T Consensus 79 -------~~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--------~----~-------------- 123 (330)
T PRK11028 79 -------PGSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVAPIQI--------I----E-------------- 123 (330)
T ss_pred -------CCCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCCceee--------c----c--------------
Confidence 03467899988 677666654 58899999997432 1111000 0 0
Q ss_pred CCCCceeEEEeecCCCCEEEEE-EccCcEEEEecCC
Q 001279 247 PEEKEISALCWASSSGSILAVG-YIDGDILLWNTST 281 (1108)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg-~~DG~I~lWd~~~ 281 (1108)
......++++ +|+|++++++ ..++.|.+||+.+
T Consensus 124 -~~~~~~~~~~-~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 124 -GLEGCHSANI-DPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred -CCCcccEeEe-CCCCCEEEEeeCCCCEEEEEEECC
Confidence 0123455665 5999988554 4569999999864
No 183
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=8.3e-14 Score=165.52 Aligned_cols=207 Identities=22% Similarity=0.313 Sum_probs=156.5
Q ss_pred CCCCceEEEEcCCCCE----EEEEECCCcEEEEecCCc------c-eEEeCCCCCCEEEEEEeeCCC-EEEEEeCCCcEE
Q 001279 34 IPATASILAFDHIQRL----LAIATLDGRIKVIGGDGI------E-GLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQ 101 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~----LA~Gs~dG~I~iw~~~~~------~-~~~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~ 101 (1108)
....=..|+|.+.+.. ||.|.+||.|-+|+.+.. + +.....|+++|..|.|++.++ .|+||++||+|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3444567999887765 999999999999998542 1 125667999999999999776 999999999999
Q ss_pred EEEcCCCeeeeee---cCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001279 102 VWSLESRSLACCL---KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1108)
Q Consensus 102 vWd~~s~~~~~~~---~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1108)
|||+..-+.-... ...+.|.+++|+..- ..|++|+.+|.+.|||+.... .++. +..+. ...
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~----ls~~~----------~~~ 207 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIK----LSDTP----------GRM 207 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccc----cccCC----------Ccc
Confidence 9999874332222 356789999999765 567888999999999998641 2222 22111 014
Q ss_pred CeEEEecccCCCCCEEEEEECCC---eEEEEEccCCeE-E-EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCce
Q 001279 178 PVVGVLPHPNSSGNRVLIAYENA---LVILWDVSEAQI-I-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1108)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg---~V~lWdl~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 252 (1108)
.+..++|||. .-++|++++.|. .|.+||++.... + .+.+| .+.|
T Consensus 208 ~~S~l~WhP~-~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H------------------------------~~Gi 256 (1049)
T KOG0307|consen 208 HCSVLAWHPD-HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH------------------------------QRGI 256 (1049)
T ss_pred ceeeeeeCCC-CceeeeeecCCCCCceeEeecccccCCchhhhccc------------------------------ccce
Confidence 4889999997 556688888775 889999876532 2 23455 8889
Q ss_pred eEEEeecCCCCEEEEEEccCcEEEEecCCCCCCC
Q 001279 253 SALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1108)
Q Consensus 253 tsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~ 286 (1108)
.++.|...|.++|++++.|+.|.+||.++++...
T Consensus 257 lslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 257 LSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 9999976666999999999999999999875443
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=5.2e-12 Score=132.52 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=124.5
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC------eeeeee--cCCCCeeEEEEecCCCEEEEEeCCCcEE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR------SLACCL--KWESNITAFSVISGSHFMYIGDENGLMS 142 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~------~~~~~~--~~~~~Itsl~~~~~~~~l~vg~~dg~V~ 142 (1108)
-+.+|.+-|.+|+|+.++++|++++.|..+.||+++.. +.+..+ .|.+.|.|++|+....++++|..+|+|-
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 35579999999999999999999999999999998643 444444 4558999999999999999999999987
Q ss_pred EEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe-EEEEeCCCcc
Q 001279 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDL 221 (1108)
Q Consensus 143 vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~-~~~~~~~~~~ 221 (1108)
..++++.+ ++ | +.+|.- +.+.|+.+.-||. +. .|++.+.+|.|.+||.+... .+..+..
T Consensus 131 ~HDiEt~q-si----~-V~~~~~---------~~~~VY~m~~~P~-DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--- 190 (609)
T KOG4227|consen 131 KHDIETKQ-SI----Y-VANENN---------NRGDVYHMDQHPT-DN-TLIVVTRAKLVSFIDNRDRQNPISLVLP--- 190 (609)
T ss_pred eeecccce-ee----e-eecccC---------cccceeecccCCC-Cc-eEEEEecCceEEEEeccCCCCCCceeee---
Confidence 77776521 11 2 222320 1168999999997 44 49999999999999987754 1111100
Q ss_pred cccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+ .-.+...++.|.......|++.+..|-+-+||....
T Consensus 191 ----------A--------------N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 191 ----------A--------------NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ----------c--------------CCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 0 014556677776445578888999999999998754
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=1.9e-13 Score=155.85 Aligned_cols=161 Identities=13% Similarity=0.220 Sum_probs=124.1
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~ 149 (1108)
.+.+|-.+|.|..|...|.+++++++|..++||..++..++.+. +|.+.|+.++++..+-+++.++.|..|+||.+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~- 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD- 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-
Confidence 34568899999999999999999999999999999999888777 7999999999999999999999999999999864
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccC
Q 001279 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVD 229 (1108)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~ 229 (1108)
+.++.. +.+|+ ++|++++|+|. .+.+.||++++||.+-.-.+.
T Consensus 264 -~~pvsv---Lrght------------gavtaiafsP~------~sss~dgt~~~wd~r~~~~~y--------------- 306 (1113)
T KOG0644|consen 264 -GAPVSV---LRGHT------------GAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIY--------------- 306 (1113)
T ss_pred -CchHHH---Hhccc------------cceeeeccCcc------ccCCCCCceEecccccccccc---------------
Confidence 333322 55666 99999999994 477899999999988211111
Q ss_pred CCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
++.++...+ ..-+.++- ++.++..+++|+.|+.-..|.+.
T Consensus 307 -~prp~~~~~---------~~~~~s~~-~~~~~~~f~Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 307 -VPRPLKFTE---------KDLVDSIL-FENNGDRFLTGSRDGEARNHEFE 346 (1113)
T ss_pred -CCCCCCccc---------ccceeeee-ccccccccccccCCcccccchhh
Confidence 133333333 33444555 34677778888888877766653
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=7.9e-13 Score=141.71 Aligned_cols=198 Identities=16% Similarity=0.174 Sum_probs=149.7
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEecCCc-ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC-
Q 001279 39 SILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW- 116 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~dG~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~- 116 (1108)
-++||+.+++.||+|..||.+|||+.+.. ..+.+..|...|.+|.|+|||.+|++.+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 68999999999999999999999997554 455788899999999999999999999999 999999999966655532
Q ss_pred --CCCeeEEEEecCC---C--EEEEEeCCCcEEEEEEecCCC-eeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 117 --ESNITAFSVISGS---H--FMYIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 117 --~~~Itsl~~~~~~---~--~l~vg~~dg~V~vw~~d~~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
+.....+.|+.+. . ..+.-...+.|+.|++..-.+ ...+....+. ....|.++.-++
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-------------~~~siSsl~VS~-- 291 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-------------RFKSISSLAVSD-- 291 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-------------ccCcceeEEEcC--
Confidence 2346666676655 2 222333456677766554222 1111000111 125699999966
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
+|++++.|+.||.|.|++..+-+.+.+..+ +| ...||.+.| +||.+++++.
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq~~~~vk~--------aH--------------------~~~VT~ltF-~Pdsr~~~sv 342 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQRLQYVKE--------AH--------------------LGFVTGLTF-SPDSRYLASV 342 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceeeeeEeehh--------hh--------------------eeeeeeEEE-cCCcCccccc
Confidence 899999999999999999998877766533 22 678999996 5999999999
Q ss_pred EccCcEEEEecCC
Q 001279 269 YIDGDILLWNTST 281 (1108)
Q Consensus 269 ~~DG~I~lWd~~~ 281 (1108)
+.|....+..+.-
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 9999999888764
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.44 E-value=3.6e-12 Score=129.37 Aligned_cols=224 Identities=13% Similarity=0.138 Sum_probs=154.5
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcce----E---EeCCCCCCEEEEEEee--CCCEEEEEeCCCcEEEEEcC
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG----L---LISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~----~---~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWd~~ 106 (1108)
+.|.|+.|.|++..||.-. |..|.+|+++.... + ...+|....++-+|+| |+..+++. .|+++..||++
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~R 201 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLR 201 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEcc
Confidence 3789999999999998776 88999999965432 1 2223566788889998 55555555 59999999999
Q ss_pred CCeeeeee--cCCCCeeEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 107 SRSLACCL--KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 107 s~~~~~~~--~~~~~Itsl~~~~~~~-~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
+.....++ .|...|..+.|+|..+ +|++++.||.|+|||.......+ +.+++|. .+|.+|.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv----~el~~Hs------------HWvW~VR 265 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV----QELPGHS------------HWVWAVR 265 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc----cccCCCc------------eEEEEEE
Confidence 98777666 5777899999999875 67888999999999976422111 3466666 8999999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCe--EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC
Q 001279 184 PHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1108)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~lWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1108)
|+|..+. +++++++|..|.+|...+-. ....+++...... -..+......-..+.+..-.+++..|.+++|.+.|
T Consensus 266 fn~~hdq-LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e--~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 266 FNPEHDQ-LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE--DEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred ecCccce-EEEecCCCceeEEEeccccccccccccccccccCc--chhhHHhcccccccccccccccccceEEEeeccCC
Confidence 9997544 58999999999999865432 1111222110000 00000000000011111222347899999999999
Q ss_pred CCEEEEEEccCcEEEEecC
Q 001279 262 GSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~ 280 (1108)
.-.+++-+.||.+.+=+++
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 9999999999999886654
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.44 E-value=2.9e-11 Score=122.89 Aligned_cols=150 Identities=14% Similarity=0.114 Sum_probs=112.8
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCC-eEEEEecCceEEEEEecCCCCC
Q 001279 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDA 571 (1108)
Q Consensus 493 ~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~-~Lasg~~dG~V~lw~l~~~~~~ 571 (1108)
++++.++|. .|++++.||+.+.... +.+ -..|...|..|+|.|+-+ +|+++++||.|+|||....+.
T Consensus 182 Hdgnqv~tt-~d~tl~~~D~RT~~~~--~sI--------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~- 249 (370)
T KOG1007|consen 182 HDGNQVATT-SDSTLQFWDLRTMKKN--NSI--------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF- 249 (370)
T ss_pred CccceEEEe-CCCcEEEEEccchhhh--cch--------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-
Confidence 455566664 4899999999865533 111 346777899999999876 588999999999999987533
Q ss_pred ccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEccCce--------------
Q 001279 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLS-------------- 636 (1108)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg-~~LavGs~dG~V~vwd~~~~~-------------- 636 (1108)
++..+..|..-|++|.|+|.. +++.+|+.|..|.+|-...-+
T Consensus 250 -----------------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~ 306 (370)
T KOG1007|consen 250 -----------------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES 306 (370)
T ss_pred -----------------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccC
Confidence 467778999999999999965 788999999999999653211
Q ss_pred ----------EE--EEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEe
Q 001279 637 ----------VL--FFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1108)
Q Consensus 637 ----------~~--~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d 698 (1108)
.+ -+...+..|...|.+++|++. +.-++++.+.||.|.|=.
T Consensus 307 e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa---------------------dPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 307 EDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA---------------------DPWIFASLSYDGRVIISS 359 (370)
T ss_pred cchhhHHhcccccccccccccccccceEEEeeccC---------------------CCeeEEEeccCceEEeec
Confidence 01 012356679999999999953 234678999999986644
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.8e-12 Score=143.14 Aligned_cols=217 Identities=18% Similarity=0.206 Sum_probs=161.9
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC---------cceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~---------~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1108)
-|...|.+++|.|....|++|+.||.|++|++.. ..+..+.+|.+||-|+++..++.++++++.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 4567789999999999999999999999999822 1334677899999999999999999999999999999
Q ss_pred EcCCC----------eee-eeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec--e------eecccc
Q 001279 104 SLESR----------SLA-CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP--Y------NISADA 164 (1108)
Q Consensus 104 d~~s~----------~~~-~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~--~------~i~~~~ 164 (1108)
++... .+. +..+|.+.|..+++++...+|++++.||+++.|+.....-.....+ + .+....
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR 451 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch
Confidence 76422 122 2337889999999999999999999999999999754322100000 0 000000
Q ss_pred ----c---------------c--cccCCC--CCC---CCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-eC
Q 001279 165 ----L---------------S--EKAGFP--LLS---HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GG 217 (1108)
Q Consensus 165 ----~---------------~--~~~~~~--~~~---~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~ 217 (1108)
+ . ..+..+ .+. ...+.-|.+||. ..+.+++..|+.|+++|..+++++.- ..
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~--~~~~~~~hed~~Ir~~dn~~~~~l~s~~a 529 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT--ADITFTAHEDRSIRFFDNKTGKILHSMVA 529 (577)
T ss_pred hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC--CCeeEecccCCceecccccccccchheee
Confidence 0 0 000000 111 244778888884 56689999999999999999887643 22
Q ss_pred CCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 218 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
| ...|++++.. |+|-+|++|+.||.+++|++...
T Consensus 530 ~------------------------------~~svtslai~-~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 530 H------------------------------KDSVTSLAID-PNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred c------------------------------cceecceeec-CCCceEEeecCCceeehhhccch
Confidence 3 6679999965 99999999999999999998644
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.43 E-value=1e-10 Score=121.00 Aligned_cols=222 Identities=13% Similarity=0.137 Sum_probs=164.4
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc----eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc-CCC
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL-ESR 108 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~----~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~-~s~ 108 (1108)
....|+|.||++|...+|++.....|.||...+.. ...+..|...|+.++|+|...++++|+.|..-.||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 57789999999999999999999999999886554 3467789999999999999999999999999999998 444
Q ss_pred e---eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 109 S---LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 109 ~---~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
+ .+..+.+....+++.|+|..+.+++|+....|.||-|+.++.=.+ .-|. . .+....|+++.||
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV------sKhi-----k--kPirStv~sldWh 155 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV------SKHI-----K--KPIRSTVTSLDWH 155 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh------hhhh-----C--Cccccceeeeecc
Confidence 3 344558889999999999999999999999999999987543211 1111 0 1112569999999
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE
Q 001279 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1108)
| ++-+|+.|+.|+..+||..=-+.+-..-.. +|=+..-.+|.....-....+-|..++| +|+|..|
T Consensus 156 p--nnVLlaaGs~D~k~rVfSayIK~Vdekpap-----------~pWgsk~PFG~lm~E~~~~ggwvh~v~f-s~sG~~l 221 (361)
T KOG1523|consen 156 P--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAP-----------TPWGSKMPFGQLMSEASSSGGWVHGVLF-SPSGNRL 221 (361)
T ss_pred C--CcceecccccCcceeEEEEeeeccccCCCC-----------CCCccCCcHHHHHHhhccCCCceeeeEe-CCCCCEe
Confidence 9 677789999999999997311111000000 0011111222222222233678999997 4999999
Q ss_pred EEEEccCcEEEEecCCC
Q 001279 266 AVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 266 ~sg~~DG~I~lWd~~~~ 282 (1108)
+=.+.|+.+.+=|....
T Consensus 222 awv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eEecCCCceEEeecCCC
Confidence 99999999999887644
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.42 E-value=1.4e-11 Score=125.34 Aligned_cols=206 Identities=13% Similarity=0.210 Sum_probs=156.6
Q ss_pred eeeCCCCCceEEEEcCCC-----CEEEEEECCCcEEEEecCC--cceE--------EeCCCCCCEEEEEEee-CCCEEEE
Q 001279 30 VHYGIPATASILAFDHIQ-----RLLAIATLDGRIKVIGGDG--IEGL--------LISPSQLPYKNLEFLQ-NQGFLIS 93 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~-----~~LA~Gs~dG~I~iw~~~~--~~~~--------~~~~h~~~V~~l~fs~-d~~~L~S 93 (1108)
..|-||..++.+.|.|++ .+||+.+ ..+|||.... ..+. ....+.+|+++..|.. +-.++.+
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt 168 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT 168 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence 347899999999999988 3777654 6799998853 2221 2334678999999986 6678888
Q ss_pred EeCCCcEEEEEcCCCee----eeeecCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001279 94 ITNDNEIQVWSLESRSL----ACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1108)
Q Consensus 94 ~s~d~~I~vWd~~s~~~----~~~~~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1108)
.|-|-+..|||++++.. ...+.|..+|..++|..++ +.+++.+.||+|+++|+...+..-+ -|.-+..
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI--IYE~p~~----- 241 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI--IYEDPSP----- 241 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE--EecCCCC-----
Confidence 88899999999999733 3444899999999999865 6888999999999999875332222 1333321
Q ss_pred cCCCCCCCCCeEEEecccCCCCCEEEEEECCC-eEEEEEccCCe--EEEEeCCCcccccccccCCCCCCCCCcccCcCCC
Q 001279 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1108)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-~V~lWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1108)
..+...++|++. +.+++++-..|+ .|.|.|++-.. +..+.+|
T Consensus 242 -------~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H--------------------------- 286 (364)
T KOG0290|consen 242 -------STPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNH--------------------------- 286 (364)
T ss_pred -------CCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcC---------------------------
Confidence 267899999886 566677655554 78888987653 3556666
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...|..++|.......|.+++.|....+||+...
T Consensus 287 ---~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 287 ---QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ---cccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 8889999999667789999999999999999754
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.42 E-value=3e-11 Score=140.90 Aligned_cols=193 Identities=12% Similarity=0.075 Sum_probs=127.5
Q ss_pred CcEEEEecCCc-ceEEeCCCCCCEEEEEEeeC-CCEEEEEeCCCcEEEEEcCCCee--e-----eeecCCCCeeEEEEec
Q 001279 57 GRIKVIGGDGI-EGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLESRSL--A-----CCLKWESNITAFSVIS 127 (1108)
Q Consensus 57 G~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWd~~s~~~--~-----~~~~~~~~Itsl~~~~ 127 (1108)
+.+.||++... ..-....-..+|+++.|+|. ..+|+.++.+|.|.+||++.+.. . ....|...++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 57999999544 44455556789999999994 55677777899999999988765 2 2226778999999986
Q ss_pred CCC--EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEE
Q 001279 128 GSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1108)
Q Consensus 128 ~~~--~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lW 205 (1108)
+-. -+++++.||.|..|+.+........ ..... ....+........++++.|.|. +..++++|+..|.|.--
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~----~~~~~-~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEG----LLLES-KKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKG 375 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhh----ccccc-ccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEE
Confidence 543 4899999999999987642110000 00000 0111122233467999999998 56669999999987653
Q ss_pred EccCCeE---EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 206 DVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 206 dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
+-...+. ..+.+|... ..+.+.|.++.+. |-+..++..+.|.++++|...
T Consensus 376 ~r~g~~~~~~~~~~~~~~~------------------------~~h~g~v~~v~~n-PF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTF------------------------ITHIGPVYAVSRN-PFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred eccCCcccccccccccccc------------------------cccCcceEeeecC-CCccceeeeeccceeEecccc
Confidence 3333221 111111000 1127889999975 888766666669999999875
No 193
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.40 E-value=2e-11 Score=129.08 Aligned_cols=133 Identities=16% Similarity=0.221 Sum_probs=114.9
Q ss_pred ccCCCCCeEEEEEEe-CCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEE
Q 001279 532 VAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ 610 (1108)
Q Consensus 532 l~~h~~~Vt~lafs~-d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtsla 610 (1108)
+.+|+++|..++|+| ++..+|+|+.|.+|.||.+..+.-.. +-..++..+.+|...|--|+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~------------------~ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR------------------DLTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc------------------CcccceEEEeecceeEEEEe
Confidence 679999999999999 56789999999999999997753211 11136788999999999999
Q ss_pred EcCCC-CEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEc
Q 001279 611 FTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 689 (1108)
Q Consensus 611 fspdg-~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s 689 (1108)
|+|.. +.|++.+.|.+|.|||+.+++.++.. . |+.-|.++.|+ .++.+|++.+
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l---~-hpd~i~S~sfn----------------------~dGs~l~Ttc 192 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITL---D-HPDMVYSMSFN----------------------RDGSLLCTTC 192 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeec---C-CCCeEEEEEec----------------------cCCceeeeec
Confidence 99964 78899999999999999999887543 2 99999999999 5689999999
Q ss_pred CCccEEEEeCCCcceecCC
Q 001279 690 KDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 690 ~Dg~v~v~d~~~g~~l~~~ 708 (1108)
+|..|+|||..+|+++..+
T Consensus 193 kDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred ccceeEEEcCCCCcEeeec
Confidence 9999999999999999776
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.39 E-value=1.7e-10 Score=117.65 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=71.6
Q ss_pred EEEEEecCC-cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC-CeEEEEecCceEEEEEecCCCCCccc
Q 001279 497 VYLAGYHDG-SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1108)
Q Consensus 497 llatgs~DG-tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~-~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1108)
++||-..|. .|.|.|+..++... ..+.+|.+.|.+++|.|.+ ..|+++++|..+.||++.....+
T Consensus 257 ymATf~~dS~~V~iLDiR~P~tpv----------a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~--- 323 (364)
T KOG0290|consen 257 YMATFAMDSNKVVILDIRVPCTPV----------ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE--- 323 (364)
T ss_pred HHhhhhcCCceEEEEEecCCCcce----------ehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc---
Confidence 455544443 47888888766320 3588999999999999965 57999999999999999876431
Q ss_pred cccccCccceeecccCCcceEEEEEeecCcCEEEEEEcC-CCCEEEEEeCCC
Q 001279 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECG 625 (1108)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafsp-dg~~LavGs~dG 625 (1108)
.+..++..+. ..+.|..++|++ ...++++++...
T Consensus 324 ----------------~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 324 ----------------NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred ----------------CCCCchhhhh-ccceeeeeeecccCCCEEEEEecCe
Confidence 1122444444 578899999996 567888887643
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.39 E-value=2.1e-10 Score=118.60 Aligned_cols=138 Identities=15% Similarity=0.244 Sum_probs=100.5
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeeeeec-CC
Q 001279 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLK-WE 117 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~~~~-~~ 117 (1108)
-..|||+|+++|+.++- ++-|=|..+.++.-+..--..|..+.|..|.-+++.+- .++.|.+|++..-+..+.+. .+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 36799999999999865 77777776665542222234688999999887776664 58899999999998888884 55
Q ss_pred CCeeEEEEecCCCEEEE-EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEE
Q 001279 118 SNITAFSVISGSHFMYI-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1108)
Q Consensus 118 ~~Itsl~~~~~~~~l~v-g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~ 196 (1108)
..+.+.+|+|+++.++. ..-+-.|.||.+.+..+.+. +... ..+..++|+| +|+..+++
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~------~~pK------------~~~kg~~f~~--dg~f~ai~ 151 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL------PHPK------------TNVKGYAFHP--DGQFCAIL 151 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe------cccc------------cCceeEEECC--CCceeeee
Confidence 78999999999976654 44577899999987544443 2111 3467778877 67765555
Q ss_pred EC
Q 001279 197 YE 198 (1108)
Q Consensus 197 ~~ 198 (1108)
++
T Consensus 152 sR 153 (447)
T KOG4497|consen 152 SR 153 (447)
T ss_pred ec
Confidence 54
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.38 E-value=1.3e-11 Score=130.48 Aligned_cols=211 Identities=13% Similarity=0.129 Sum_probs=151.7
Q ss_pred cceeeeeeCCCCCceEEEEcC-CCCEEEEEECCCcEEEEecCCc--------ceEEeCCCCCCEEEEEEeeC-CCEEEEE
Q 001279 25 NLRIAVHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQN-QGFLISI 94 (1108)
Q Consensus 25 ~~~~~~~~G~~~~is~la~sp-~~~~LA~Gs~dG~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d-~~~L~S~ 94 (1108)
|.+.-.-.||.+.+-.++|+| +...||+|++|.+|.||.++.. -+..+.+|+..|-.++|+|- ...|+|+
T Consensus 71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 334444569999999999999 5678999999999999998432 24567789999999999994 4689999
Q ss_pred eCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001279 95 TNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 95 s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
+.|++|.+||+.+++.+-.+.|+..|.+++|+.++.++++.+.|..|+||+-. .+++... -.+|.-
T Consensus 151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr--~~~~v~e---~~~heG--------- 216 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR--RGTVVSE---GVAHEG--------- 216 (472)
T ss_pred cCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCC--CCcEeee---cccccC---------
Confidence 99999999999999988888999999999999999999999999999999855 3566542 233430
Q ss_pred CCCCeEEEecccCCCCCEEEEEEC---CCeEEEEEccCCe-EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCC
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~---dg~V~lWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1108)
.....+.| ..++..+-+|++ +..+.|||...-. .+..... .. ..
T Consensus 217 --~k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el---Dt-------------------------Sn 264 (472)
T KOG0303|consen 217 --AKPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL---DT-------------------------SN 264 (472)
T ss_pred --CCcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEe---cc-------------------------CC
Confidence 22344455 336774445553 4588899865432 1111100 00 11
Q ss_pred ceeEEEeecCCCCEEE-EEEccCcEEEEecCCC
Q 001279 251 EISALCWASSSGSILA-VGYIDGDILLWNTSTT 282 (1108)
Q Consensus 251 ~Vtsl~w~spdg~~l~-sg~~DG~I~lWd~~~~ 282 (1108)
.|.==- ..+|.+.|+ +|-.||.|+.|.+.+.
T Consensus 265 Gvl~PF-yD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 265 GVLLPF-YDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceEEee-ecCCCCEEEEEecCCcceEEEEecCC
Confidence 222222 347777665 4557999999998755
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=5.1e-11 Score=130.69 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=101.9
Q ss_pred CeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCE
Q 001279 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1108)
Q Consensus 538 ~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~ 617 (1108)
+|...+|+|||++||+.+.||.+|||++.... ++...+.--+...||+|||||++
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-------------------------Llg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-------------------------LLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHH-------------------------HHHHHHhhccceEEEEEcCCccE
Confidence 67889999999999999999999999998751 22333445678999999999999
Q ss_pred EEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccc---------cCCC-------CCCCCCC-----
Q 001279 618 LAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSL---------AKNP-------NHSEREV----- 676 (1108)
Q Consensus 618 LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~---------~~~p-------~~~~~~~----- 676 (1108)
||+|++|-.|.||.+...+++.+- .||.++|..++|+|+.....- ..++ +.....+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARG---qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~ 423 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARG---QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCP 423 (636)
T ss_pred EEecCCcceEEEEEeccceEEEec---cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCc
Confidence 999999999999999999999544 469999999999975222110 0000 0000000
Q ss_pred -----CCCCCccEEEEEcCCccEEEEeCCCcc
Q 001279 677 -----PVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 677 -----~~~p~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1108)
-.+.....+-+.+.|-.+|+||..--.
T Consensus 424 ~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 424 LSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccccccccceEEEeecccccceEEEEecchhh
Confidence 001124468899999999999986433
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=6.3e-11 Score=117.68 Aligned_cols=257 Identities=15% Similarity=0.187 Sum_probs=157.1
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCC----------c-ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDG----------I-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~----------~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~ 105 (1108)
+|.+-|++|.+++|++|..+|.|.++.+.. . .++.+..|.+||..+.|.. .+|++++ ||.|+=|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 455678999999999999999999997632 1 2334578999999999984 4677776 589998887
Q ss_pred CCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 106 ~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
+.-... .+.-++|.+.. ||...... ...|.++...
T Consensus 89 ~E~~es--------------------------~~~K~lwe~~~--------P~~~~~~e-----------vPeINam~ld 123 (325)
T KOG0649|consen 89 NEEEES--------------------------LATKRLWEVKI--------PMQVDAVE-----------VPEINAMWLD 123 (325)
T ss_pred hhhhhh--------------------------ccchhhhhhcC--------ccccCccc-----------CCccceeEec
Confidence 543110 12224555432 22222111 1458888888
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 186 PNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
|. .+. ++.+..|+.+.-||++++++.. ++|| ..-|.+++--+. ...
T Consensus 124 P~-enS-i~~AgGD~~~y~~dlE~G~i~r~~rGH------------------------------tDYvH~vv~R~~-~~q 170 (325)
T KOG0649|consen 124 PS-ENS-ILFAGGDGVIYQVDLEDGRIQREYRGH------------------------------TDYVHSVVGRNA-NGQ 170 (325)
T ss_pred cC-CCc-EEEecCCeEEEEEEecCCEEEEEEcCC------------------------------cceeeeeeeccc-Ccc
Confidence 86 455 6777799999999999999854 6778 555666663323 446
Q ss_pred EEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEE
Q 001279 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~lt 344 (1108)
|++|+.||++++||.++++..............|-. ...|.+. ...+...+++||.+
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~-----------~g~wiga----la~~edWlvCGgGp-------- 227 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD-----------WGKWIGA----LAVNEDWLVCGGGP-------- 227 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcc-----------cCceeEE----EeccCceEEecCCC--------
Confidence 899999999999999987543321111111111100 1133332 23345677788777
Q ss_pred EEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeec
Q 001279 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 412 (1108)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~ 412 (1108)
.+.+|.-...+.. ..++...++.++.|..+ .+++..+...+..|..+.+....
T Consensus 228 ~lslwhLrsse~t-----~vfpipa~v~~v~F~~d----------~vl~~G~g~~v~~~~l~Gvl~a~ 280 (325)
T KOG0649|consen 228 KLSLWHLRSSEST-----CVFPIPARVHLVDFVDD----------CVLIGGEGNHVQSYTLNGVLQAN 280 (325)
T ss_pred ceeEEeccCCCce-----EEEecccceeEeeeecc----------eEEEeccccceeeeeeccEEEEe
Confidence 3444433322221 34445555555555544 34444545566666655544433
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.2e-12 Score=136.20 Aligned_cols=176 Identities=19% Similarity=0.223 Sum_probs=125.4
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecC
Q 001279 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 488 ~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
++++..++..++||+.||++|+|+....... .....|...|.+|+|+|||++|++-+.| ..+||+...
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-----------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-----------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhh-----------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 4589999999999999999999997655433 2355788899999999999999999999 999999887
Q ss_pred CC-------CCc-----cccccccCccceeec----ccCCcce-EE------------EEEeecCcCEEEEEEcCCCCEE
Q 001279 568 SL-------DAK-----NFLFVLETKSEVHAL----PEGKISL-CR------------AVFSLVNSPVRALQFTSSGAKL 618 (1108)
Q Consensus 568 ~~-------~~~-----~~~~~~~~~~~~~~~----~~~~g~~-~~------------~~~~~h~~~Vtslafspdg~~L 618 (1108)
.. .+. .+.|.....++..-+ ..+++.. |. .....-...|++|+.|++|+++
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 61 111 122222221121100 0011111 10 1111124579999999999999
Q ss_pred EEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEe
Q 001279 619 AVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1108)
Q Consensus 619 avGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d 698 (1108)
|+|+.||.|.|++....+.++..+ ..|..-|+.|.|+ |+.+++.+.+.|....|.-
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~----------------------Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFS----------------------PDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeeh--hhheeeeeeEEEc----------------------CCcCcccccccCCceeEEE
Confidence 999999999999999988875443 3599999999999 5566677777776666654
Q ss_pred C
Q 001279 699 G 699 (1108)
Q Consensus 699 ~ 699 (1108)
.
T Consensus 353 l 353 (398)
T KOG0771|consen 353 L 353 (398)
T ss_pred E
Confidence 3
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.36 E-value=2.3e-10 Score=118.37 Aligned_cols=139 Identities=11% Similarity=0.114 Sum_probs=101.6
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEE-eCCCcEEEEEEecCCCeeeeecee
Q 001279 81 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYN 159 (1108)
Q Consensus 81 ~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg-~~dg~V~vw~~d~~~~~l~~~~~~ 159 (1108)
..+|||+|+++++++ +..+.|-|.++-++.+.+..-..|..+-|..+..+++++ ..++.|.+|++...+-.. +
T Consensus 13 ~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c-----k 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC-----K 86 (447)
T ss_pred ceeECCCCCeeeeee-eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE-----E
Confidence 568999999999998 458999999988877666555677788888888776655 578899999987532221 2
Q ss_pred ecccccccccCCCCCCCCCeEEEecccCCCCCE-EEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCc
Q 001279 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR-VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1108)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~-ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1108)
|.... .++.+++|+| +|.+ |.+..-+-.|.||.+.+.+...+.-.
T Consensus 87 Ideg~------------agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~~~p-------------------- 132 (447)
T KOG4497|consen 87 IDEGQ------------AGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLLPHP-------------------- 132 (447)
T ss_pred eccCC------------CcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEeccc--------------------
Confidence 43322 7799999999 5643 55666688999999999877654311
Q ss_pred ccCcCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001279 239 LEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1108)
Q Consensus 239 ~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1108)
...+..++|. |||++.+..+.
T Consensus 133 ----------K~~~kg~~f~-~dg~f~ai~sR 153 (447)
T KOG4497|consen 133 ----------KTNVKGYAFH-PDGQFCAILSR 153 (447)
T ss_pred ----------ccCceeEEEC-CCCceeeeeec
Confidence 3345667765 99998776654
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.36 E-value=1.2e-10 Score=127.35 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=130.1
Q ss_pred CCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEe
Q 001279 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVI 126 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~ 126 (1108)
...+++++.||++.|.+..+.-......|.++|.+-.|+|||.-|++++.||.|++|.-...-.....+....|.|++|.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC
Confidence 35788999999999999887777788899999999999999999999999999999986433333334777899999999
Q ss_pred cCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEE
Q 001279 127 SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 206 (1108)
Q Consensus 127 ~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWd 206 (1108)
|+++-++-+- .+.++|--+... .++ .+..+|+ +-|.++.|+| ..+.+++|+.|-..+|||
T Consensus 155 p~S~~vl~c~-g~h~~IKpL~~n-~k~----i~WkAHD------------GiiL~~~W~~--~s~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 155 PNSNSIVFCQ-GGHISIKPLAAN-SKI----IRWRAHD------------GLVLSLSWST--QSNIIASGGEDFRFKIWD 214 (737)
T ss_pred CCCCceEEec-CCeEEEeecccc-cce----eEEeccC------------cEEEEeecCc--cccceeecCCceeEEeec
Confidence 9986544433 344555444432 122 2355666 7899999988 566799999999999999
Q ss_pred ccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEE
Q 001279 207 VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 275 (1108)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~ 275 (1108)
--...+.....| +-+||+++|. |+ ..++.++. ++++
T Consensus 215 ~~G~~Lf~S~~~------------------------------ey~ITSva~n-pd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 215 AQGANLFTSAAE------------------------------EYAITSVAFN-PE-KDYLLWSY-NTAR 250 (737)
T ss_pred ccCcccccCChh------------------------------ccceeeeeec-cc-cceeeeee-eeee
Confidence 765443332222 7789999997 88 44444433 3444
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.35 E-value=2.9e-12 Score=146.40 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=127.2
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCee
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~ 110 (1108)
.||-..|.|.+|+-.|+++.+|+.|..++||..++..++ ...+|.+.|+.++.+.+..+++++|.|..|+||-+..+.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 367778999999999999999999999999998776655 6778999999999999989999999999999999999999
Q ss_pred eeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 111 ~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
+..+ +|++.||+++|+|.. +.+.||++++|++.-+.......|.++.+. .-+.++.| ...
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~-------------~~~~s~~~--~~~ 327 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK-------------DLVDSILF--ENN 327 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccc-------------cceeeeec--ccc
Confidence 9887 899999999999976 677899999999873222222112222221 45788888 446
Q ss_pred CCEEEEEECCCeEEEEEc
Q 001279 190 GNRVLIAYENALVILWDV 207 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl 207 (1108)
+..+++++.|+.-..|..
T Consensus 328 ~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred ccccccccCCcccccchh
Confidence 777899999987666653
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=7.8e-11 Score=138.68 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=123.3
Q ss_pred CCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC---CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEE
Q 001279 56 DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 132 (1108)
Q Consensus 56 dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l 132 (1108)
+..|++||.++.....+..|...+...+|+|||.+|+.++.+ ..|.+||+.+++........+...+.+|+|++++|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 468999999887777777888899999999999999988754 36999999988654333344455678999999988
Q ss_pred EEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEccCC
Q 001279 133 YIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEA 210 (1108)
Q Consensus 133 ~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~~~ 210 (1108)
+++. .+|.+.||.++...+.+.+ +..+. ..+....|+| +|..|+.++ .+|...||++...
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~------------~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTPSQ----LTSGA------------GNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCeEe----eccCC------------CCcCCEEECC--CCCEEEEEECCCCCceEEEEECC
Confidence 8764 6888888888866555543 33332 4477889988 687666555 5788888886542
Q ss_pred -eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 211 -QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
......++ .. .+..| +|||+.|+..+.++ +.+||+.+
T Consensus 325 ~~~~~~l~~------------------------------~~--~~~~~-SpDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 325 GGGASLVGG------------------------------RG--YSAQI-SADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred CCCeEEecC------------------------------CC--CCccC-CCCCCEEEEEcCCC-EEEEECCC
Confidence 11122122 11 23556 59999998887754 55577654
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1e-10 Score=128.14 Aligned_cols=236 Identities=13% Similarity=0.123 Sum_probs=153.6
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce--EEeCCCCCCEEEEEEee--CCCEEEEEeCCCcEEEEEcC
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~--~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWd~~ 106 (1108)
..||.+-|.||+|+.+|.+||+|++|-+|.|||.-.... ..-.+|.+-|-++.|.| +...++|+..|..|+++|+.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 459999999999999999999999999999999853333 36678999999999998 45789999999999999998
Q ss_pred CC----------eeeeee-cCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001279 107 SR----------SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 107 s~----------~~~~~~-~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
.. ..+... -|...|.-++..|++ +.+.++++||+|+-+|+......-.. -..+ ...... ..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~--~~~~--~~l~ny---~~ 198 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD--EDCP--SILVNY---NP 198 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc--cccc--HHHHHh---ch
Confidence 52 112222 466788889999998 67889999999998887531110000 0000 000000 00
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEE-EEeCCCcccccccccCCCCCCCC-----CcccCcCCCCC-
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDS-----TFLEGISEHQP- 247 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~- 247 (1108)
..-...|+..+|+ +...|++|.+|-..++||.+..... .--+. ... ++.... ...+.+...+.
T Consensus 199 ~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~---~~~------~pp~~~~cv~yf~p~hlkn~~gn 268 (758)
T KOG1310|consen 199 QLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGT---MNT------CPPKDCRCVRYFSPGHLKNSQGN 268 (758)
T ss_pred hhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCcc---ccC------CCCcccchhheecCccccCcccc
Confidence 0134678888997 5667999999999999995332110 00000 000 000000 01111111111
Q ss_pred CCCceeEEEe--ecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 248 EEKEISALCW--ASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 248 ~~~~Vtsl~w--~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
....++++.+ ++|+|.-|++....-.|+++|+...+
T Consensus 269 ~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 269 LDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred cccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 2445554432 36999988888888889999987655
No 205
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=3.4e-11 Score=125.55 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=118.3
Q ss_pred CcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCC-CCeEEEEEEeCCCeEEEEec----CceEEEEEecCCC
Q 001279 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR-APVSTLSFCFINSSLAVGNE----FGLVYIYNLNGSL 569 (1108)
Q Consensus 495 ~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~-~~Vt~lafs~d~~~Lasg~~----dG~V~lw~l~~~~ 569 (1108)
...+.+|+.||+||+||+....-. ..+.+.+|. .+..|++..-.++.+++|.. +..|.+||++...
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~---------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAES---------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhh---------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence 447999999999999999866532 223345554 57778887778888888764 6789999998874
Q ss_pred CCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCC-CCEEEEEeCCCeEEEEEccCce---EEEEeecCC
Q 001279 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLS---VLFFTDDIS 645 (1108)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspd-g~~LavGs~dG~V~vwd~~~~~---~~~~~~~~~ 645 (1108)
.. +......|..-||+|+|+|. -++|++|+.||.|.|+|+.... .++ ...
T Consensus 155 q~-----------------------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~---~vi 208 (376)
T KOG1188|consen 155 QL-----------------------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL---HVI 208 (376)
T ss_pred ch-----------------------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH---Hhh
Confidence 31 12234679999999999995 4899999999999999997652 111 112
Q ss_pred CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceec
Q 001279 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1108)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~ 706 (1108)
.|.+.|..+.|....+ ..|++.+...+..+|+.+.|....
T Consensus 209 N~~sSI~~igw~~~~y---------------------krI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 209 NHGSSIHLIGWLSKKY---------------------KRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred cccceeeeeeeecCCc---------------------ceEEEEEccCceeEEEccCCChhh
Confidence 4778899999996533 249999999999999999887543
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=2.3e-09 Score=113.27 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=93.3
Q ss_pred cccCCCccccCCCCcEEEEEecCCc-EEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceE
Q 001279 482 VPSPVPITKCHSVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLV 560 (1108)
Q Consensus 482 ~~~~~~~~~~s~~~~llatgs~DGt-VriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V 560 (1108)
|.+.+.+++++++|.+|||+++.|+ ||++.+..+... +.+.-.... ..|.+|+|+||+.+|++.+..++|
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl--~eFRRG~~~-------~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL--YEFRRGTYP-------VSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe--eeeeCCcee-------eEEEEEEECCCCCeEEEecCCCeE
Confidence 3344556688999999999999998 899999888743 444432222 368999999999999999999999
Q ss_pred EEEEecCCCCCccccccccCc--------------cceee-cccCCcceEEEEEeecCc---CEEEEEEcCCCCEEEEEe
Q 001279 561 YIYNLNGSLDAKNFLFVLETK--------------SEVHA-LPEGKISLCRAVFSLVNS---PVRALQFTSSGAKLAVGF 622 (1108)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~g~~~~~~~~~h~~---~Vtslafspdg~~LavGs 622 (1108)
.||++.....+.......... ..+.. +.+...| .+.+...+ .+..+.=.+....+-+++
T Consensus 243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~F---At~~l~~s~~~~~~~l~~~~~~~~v~vas 319 (391)
T KOG2110|consen 243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKF---ATAKLPESGRKNICSLSSIQKIPRVLVAS 319 (391)
T ss_pred EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccce---eEEEccCCCccceEEeeccCCCCEEEEEE
Confidence 999998765332220000000 00111 1112212 12222222 344444345778999999
Q ss_pred CCCeEEEEEcc---CceEE
Q 001279 623 ECGRVAVLDMN---LLSVL 638 (1108)
Q Consensus 623 ~dG~V~vwd~~---~~~~~ 638 (1108)
.||.++.|.+. ++.+.
T Consensus 320 ~dG~~y~y~l~~~~gGec~ 338 (391)
T KOG2110|consen 320 YDGHLYSYRLPPKEGGECA 338 (391)
T ss_pred cCCeEEEEEcCCCCCceeE
Confidence 99999999874 45554
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.32 E-value=1.6e-09 Score=123.38 Aligned_cols=216 Identities=12% Similarity=0.071 Sum_probs=141.0
Q ss_pred eeeeeCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEecCCc-ce--EEeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEE
Q 001279 28 IAVHYGIPATASILAFDHIQRLLAIAT-LDGRIKVIGGDGI-EG--LLISPSQLPYKNLEFLQNQGFLISITN-DNEIQV 102 (1108)
Q Consensus 28 ~~~~~G~~~~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~~-~~--~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~v 102 (1108)
........+.+..++++|++++|++++ .++.|.+|+++.. .. .......+....++|+|++++|++++. ++.|.+
T Consensus 27 ~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v 106 (330)
T PRK11028 27 LLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSV 106 (330)
T ss_pred eeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEE
Confidence 334444567788899999999987775 4799999998632 22 222233445789999999999998875 889999
Q ss_pred EEcCCCe----eeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeee---ceeecccccccccCCCCC
Q 001279 103 WSLESRS----LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQL---PYNISADALSEKAGFPLL 174 (1108)
Q Consensus 103 Wd~~s~~----~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~---~~~i~~~~~~~~~~~~~~ 174 (1108)
||+++.. .+..........+++++|+++++++++ .++.|++|+++. .+.+... ...++.
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~-~g~l~~~~~~~~~~~~------------ 173 (330)
T PRK11028 107 SPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD-DGHLVAQEPAEVTTVE------------ 173 (330)
T ss_pred EEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC-CCcccccCCCceecCC------------
Confidence 9997432 222233334567889999999987666 468999999975 3333210 011111
Q ss_pred CCCCeEEEecccCCCCCEEEEEEC-CCeEEEEEccC--CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCc
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSE--AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~lWdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1108)
...+..+.|+| ++++++++.. ++.|.+||++. ++....... . ..+....+ ...
T Consensus 174 -g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~---------~---~~p~~~~~---------~~~ 229 (330)
T PRK11028 174 -GAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL---------D---MMPADFSD---------TRW 229 (330)
T ss_pred -CCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE---------e---cCCCcCCC---------Ccc
Confidence 13467899988 7888888876 89999999974 333111100 0 00000000 112
Q ss_pred eeEEEeecCCCCEEEEEEc-cCcEEEEecCC
Q 001279 252 ISALCWASSSGSILAVGYI-DGDILLWNTST 281 (1108)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~-DG~I~lWd~~~ 281 (1108)
...+.+ +|+|++++++.. ++.|.+|++..
T Consensus 230 ~~~i~~-~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 230 AADIHI-TPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred ceeEEE-CCCCCEEEEecCCCCeEEEEEEeC
Confidence 234564 599999999854 78999999864
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=4.5e-09 Score=109.09 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=78.5
Q ss_pred ccCCCCcEEEEEecCCc-EEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCC
Q 001279 490 KCHSVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGt-VriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~ 568 (1108)
+.+.+|.++||++..|| |||||..++.+. ..+.-. ...+.|.||+|||++.+||++++.|++.||.+...
T Consensus 188 ~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l--~E~RRG-------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 188 ALNLQGTLVATASTKGTLIRIFDTEDGTLL--QELRRG-------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEcCCccEEEEeccCcEEEEEEEcCCCcEe--eeeecC-------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 34456669999999999 899999999854 222211 22357999999999999999999999999999875
Q ss_pred CCCccccccccCccceeeccc-CCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEE
Q 001279 569 LDAKNFLFVLETKSEVHALPE-GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1108)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~ 628 (1108)
....... .+-+... ..++. -..-..+..++...++..-++|..+.+-++.-+.||+.+
T Consensus 259 ~~~~~~~-SSl~~~~-~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 259 ENTEDES-SSLSFKR-LVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred CCCcccc-ccccccc-cccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence 4221100 0000000 00000 000012344555567777777877744444444567544
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.29 E-value=5.7e-10 Score=133.37 Aligned_cols=208 Identities=17% Similarity=0.221 Sum_probs=140.6
Q ss_pred eeCCCCCceEEEEcCCC-CEEEEEECCCcEEEEecCCcc--------eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEE
Q 001279 31 HYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIE--------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~-~~LA~Gs~dG~I~iw~~~~~~--------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~ 101 (1108)
.|-|...+..+|.++.. .++++|+.||+||+|+....+ .+.......++.++.+.+++..+|.++.||.|+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 36677777788877655 999999999999999984322 223444677999999999999999999999999
Q ss_pred EEEcCCC--e-eeee--e----cCCCCeeEE-EEec--CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001279 102 VWSLESR--S-LACC--L----KWESNITAF-SVIS--GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1108)
Q Consensus 102 vWd~~s~--~-~~~~--~----~~~~~Itsl-~~~~--~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1108)
+.+++-- . .... . ...+.+..+ ++.. ....++.+...+.|-.||......- +++...
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-----w~lk~~------ 1192 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-----WRLKNQ------ 1192 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-----HhhhcC------
Confidence 9998762 1 1111 1 122333333 3332 2346778888888888886532111 112211
Q ss_pred CCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCC
Q 001279 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1108)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1108)
...+.|++++-.| .+..+++|.+.|.+.+||++-+..+....|- . .
T Consensus 1193 ----~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P------------~----------------~ 1238 (1431)
T KOG1240|consen 1193 ----LRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP------------A----------------R 1238 (1431)
T ss_pred ----ccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCc------------c----------------c
Confidence 1237899999988 5778999999999999999988776655440 0 2
Q ss_pred CceeE--EEeecCCCCEEEEEE--ccCcEEEEecCCCC
Q 001279 250 KEISA--LCWASSSGSILAVGY--IDGDILLWNTSTTA 283 (1108)
Q Consensus 250 ~~Vts--l~w~spdg~~l~sg~--~DG~I~lWd~~~~~ 283 (1108)
.++.. +|...+.....++++ ..+.|.+|++.++.
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 33433 343334445555554 47889999999884
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.9e-10 Score=135.44 Aligned_cols=195 Identities=10% Similarity=0.032 Sum_probs=137.2
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECC---CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEE--EEc
Q 001279 32 YGIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQV--WSL 105 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~d---G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~v--Wd~ 105 (1108)
.++...+...+|+|||+.||..+.+ ..|++||+.+.+...+....+....++|+|||.+|+.++ .++.+.| ||+
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 3456678999999999999998754 469999997655433333334455789999999888775 5776555 577
Q ss_pred CCCeeeeeecCCCCeeEEEEecCCCEEEEE-eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 106 ESRSLACCLKWESNITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 106 ~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
.++.......+...+++.+|+|++++|+.. +.+|...||.++...+.... + .+. . ....|
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----l-~~~------------~--~~~~~ 340 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----V-GGR------------G--YSAQI 340 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----e-cCC------------C--CCccC
Confidence 777665555666778899999999977655 46788999998865443321 2 111 1 34678
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
+| +|+.|+.++.++. .+||+.+++....... ....+..| +|||+.
T Consensus 341 Sp--DG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~-------------------------------~~~~~~~~-sPdG~~ 385 (429)
T PRK01742 341 SA--DGKTLVMINGDNV-VKQDLTSGSTEVLSST-------------------------------FLDESPSI-SPNGIM 385 (429)
T ss_pred CC--CCCEEEEEcCCCE-EEEECCCCCeEEecCC-------------------------------CCCCCceE-CCCCCE
Confidence 88 7887888777665 5599988865433211 01123566 499999
Q ss_pred EEEEEccCcEEEEecC
Q 001279 265 LAVGYIDGDILLWNTS 280 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~ 280 (1108)
|+.++.+|...+|.+.
T Consensus 386 i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 386 IIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEEcCCCceEEEEE
Confidence 9999999998888763
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=4.5e-10 Score=118.60 Aligned_cols=174 Identities=13% Similarity=0.142 Sum_probs=128.0
Q ss_pred EEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec----CCCCeeEEEEecCCCEEEE
Q 001279 59 IKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK----WESNITAFSVISGSHFMYI 134 (1108)
Q Consensus 59 I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~----~~~~Itsl~~~~~~~~l~v 134 (1108)
+++++......+...-...+|-++.+..+ +|+.+=.+ .|.|+|+.+.++++++. +...+.+++++..+.|++.
T Consensus 70 Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAy 146 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAY 146 (391)
T ss_pred EEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEe
Confidence 55555554444444444456666666554 56666544 49999999999998873 3456889999888888885
Q ss_pred Ee--CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCe-EEEEEccCCe
Q 001279 135 GD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL-VILWDVSEAQ 211 (1108)
Q Consensus 135 g~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~-V~lWdl~~~~ 211 (1108)
=+ ..|.|.||+.... .. .-.|..|. +++-+++|+| +|++|++|+..|+ ||||.+.+++
T Consensus 147 p~s~t~GdV~l~d~~nl----~~-v~~I~aH~------------~~lAalafs~--~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINL----QP-VNTINAHK------------GPLAALAFSP--DGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred cCCCCCceEEEEEcccc----ee-eeEEEecC------------CceeEEEECC--CCCEEEEeccCceEEEEEEcCCcc
Confidence 43 4789999997642 21 13377887 8999999988 8999999999995 6899999986
Q ss_pred EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 212 IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.+..+... . ....|.+++| +|++++|.+.+..++|+++.++..
T Consensus 208 kl~eFRRG-------~--------------------~~~~IySL~F-s~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 208 KLYEFRRG-------T--------------------YPVSIYSLSF-SPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EeeeeeCC-------c--------------------eeeEEEEEEE-CCCCCeEEEecCCCeEEEEEeccc
Confidence 65433210 0 0457889996 599999999999999999999754
No 212
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=7.1e-07 Score=106.53 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=149.0
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCE-----EEEEEeeCCCEEEEEeCCCcEEEEEcCCC-eeeeee
Q 001279 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPY-----KNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCL 114 (1108)
Q Consensus 41 la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V-----~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~~~~~ 114 (1108)
..+.-..+.+|+++.+..+-||+......+....+.... .-+.++++.-++++++.-+.|.+|+..-- ......
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 445567789999999999999999887777777666532 33345667778999999999999997632 344566
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|.+.|.++.++-++.++++.++|.++++|.++..+ .. +-..-+|. ..|..+.|+|. +++
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~--~~--~~~~fgHs------------aRvw~~~~~~n----~i~ 232 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE--VL--GCTGFGHS------------ARVWACCFLPN----RII 232 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeeccccc--cc--Cccccccc------------ceeEEEEeccc----eeE
Confidence 899999999999999999999999999999998632 11 11122343 78999999873 699
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcE
Q 001279 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I 274 (1108)
+++.|.+.++|+........+.+|. .+.|..+.. .++...+++++.||.+
T Consensus 233 t~gedctcrvW~~~~~~l~~y~~h~-----------------------------g~~iw~~~~-~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQLEVYDEHS-----------------------------GKGIWKIAV-PIGVIIKVTGGNDSTL 282 (967)
T ss_pred EeccceEEEEEecccceehhhhhhh-----------------------------hcceeEEEE-cCCceEEEeeccCcch
Confidence 9999999999987776665555551 345666664 4777788999999999
Q ss_pred EEEecCCCC
Q 001279 275 LLWNTSTTA 283 (1108)
Q Consensus 275 ~lWd~~~~~ 283 (1108)
++|+.....
T Consensus 283 k~~~l~~r~ 291 (967)
T KOG0974|consen 283 KLWDLNGRG 291 (967)
T ss_pred hhhhhhccc
Confidence 999987553
No 213
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=7.9e-10 Score=109.98 Aligned_cols=176 Identities=13% Similarity=0.140 Sum_probs=122.1
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCC
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~ 569 (1108)
+++|.++++++|+.+|+|-|..+..-.-.. ..-+.+..-+...+|..+|..|+|. ..+|++|+. |.|+=|.|....
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~s-a~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGS-AEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccc-cCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 688999999999999999999866322110 0111111112346899999999998 567777774 999999998652
Q ss_pred CCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCC
Q 001279 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1108)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~ 649 (1108)
....+ ++...+. . +..+-...--.|.+|...|..+-+..++.|+.++-||++++++. ..+.||++
T Consensus 93 es~~~-------K~lwe~~--~---P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~---r~~rGHtD 157 (325)
T KOG0649|consen 93 ESLAT-------KRLWEVK--I---PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ---REYRGHTD 157 (325)
T ss_pred hhccc-------hhhhhhc--C---ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE---EEEcCCcc
Confidence 21000 0000000 0 00100112345899999997777777779999999999999987 57789999
Q ss_pred ceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceec
Q 001279 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1108)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~ 706 (1108)
-|.++.-... ...+++|++||++++||..|++.+.
T Consensus 158 YvH~vv~R~~----------------------~~qilsG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 158 YVHSVVGRNA----------------------NGQILSGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred eeeeeeeccc----------------------CcceeecCCCccEEEEeccccceeE
Confidence 9999987522 4459999999999999999887553
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.23 E-value=9.4e-10 Score=113.99 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=126.1
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe---eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCC
Q 001279 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS---LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~---~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~ 151 (1108)
..||+|.+|++|+..++.+...++|.|+.....+ ..+.+ .|...|+++.|+|..+.|++++.|.+-+||... .++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~-~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP-SGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC-CCC
Confidence 4699999999999999999999999999987775 44555 688999999999999999999999999999873 223
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCC
Q 001279 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1108)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1108)
+..+. ..+-.+. ..+++|.|+| ..+.+++|+....|.||-++...--++..|....
T Consensus 89 ~Wkpt-lvLlRiN------------rAAt~V~WsP--~enkFAVgSgar~isVcy~E~ENdWWVsKhikkP--------- 144 (361)
T KOG1523|consen 89 TWKPT-LVLLRIN------------RAATCVKWSP--KENKFAVGSGARLISVCYYEQENDWWVSKHIKKP--------- 144 (361)
T ss_pred eeccc-eeEEEec------------cceeeEeecC--cCceEEeccCccEEEEEEEecccceehhhhhCCc---------
Confidence 33322 1122222 6699999999 4666999999999999887765443333331101
Q ss_pred CCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEec
Q 001279 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1108)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1108)
-+..|+++.|+ |++-.|++|+.|+..+++..
T Consensus 145 ----------------irStv~sldWh-pnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 145 ----------------IRSTVTSLDWH-PNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred ----------------cccceeeeecc-CCcceecccccCcceeEEEE
Confidence 16789999998 99999999999999999875
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.2e-10 Score=126.50 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=84.9
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee--cCCCCeeEEEEecC--CCEEEEEeCCCcEEEEEE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISG--SHFMYIGDENGLMSVIKY 146 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~--~~~~~Itsl~~~~~--~~~l~vg~~dg~V~vw~~ 146 (1108)
.+.+|.+.|..|.|...|..|+|+|+|..|.+|||.++.....+ +|...|..-.|.|. ..-+++.+.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 45679999999999999999999999999999999999877666 56666766667764 367888899999887665
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
.... .... +-.+..|. ++|.-++.-|.. ...|++++.|+.+.-+|++.+
T Consensus 217 ~~t~-~~e~-t~rl~~h~------------g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 217 LETG-YVEN-TKRLAPHE------------GPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred cccc-ceec-ceeccccc------------CccceeeecCCC-CCcccccccccceeeeeeccC
Confidence 4321 1110 01122222 556666655542 223666666666655555443
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=9e-10 Score=121.89 Aligned_cols=281 Identities=14% Similarity=0.198 Sum_probs=177.9
Q ss_pred eeeeeCCCCCceEEEEcCCCCE-EEEEECCCcEEEEecCCcceEEeCCCCCC-EEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001279 28 IAVHYGIPATASILAFDHIQRL-LAIATLDGRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 28 ~~~~~G~~~~is~la~sp~~~~-LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~L~S~s~d~~I~vWd~ 105 (1108)
+...+++|..-+.|..+|||+| ||+|.....|++||+....+.+...-.+. |...-.+.|-..++-...|.+|.+-.-
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 4566899999999999999997 79999999999999999888777765554 444444555555666677877776543
Q ss_pred CCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 106 ~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
-.......+ +..-..++++.-+.-|++++....| +.+..++|.+.. ||.+.. +.+.+|..+
T Consensus 124 ~G~hy~~RI--P~~GRDm~y~~~scDly~~gsg~ev--YRlNLEqGrfL~-P~~~~~--------------~~lN~v~in 184 (703)
T KOG2321|consen 124 YGRHYRTRI--PKFGRDMKYHKPSCDLYLVGSGSEV--YRLNLEQGRFLN-PFETDS--------------GELNVVSIN 184 (703)
T ss_pred cCeeeeeec--CcCCccccccCCCccEEEeecCcce--EEEEcccccccc-cccccc--------------ccceeeeec
Confidence 322222222 2222234444323334444444445 455555577665 455543 568888887
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE
Q 001279 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1108)
| ...+|++|..+|.|-.||.+....+........ + ...+.. .....|+++.|. .+|-.+
T Consensus 185 ~--~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-----v----~s~pg~---------~~~~svTal~F~-d~gL~~ 243 (703)
T KOG2321|consen 185 E--EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-----V----NSHPGG---------DAAPSVTALKFR-DDGLHV 243 (703)
T ss_pred C--ccceEEecccCceEEEecchhhhhheeeecccc-----c----CCCccc---------cccCcceEEEec-CCceeE
Confidence 7 455688888899999999988754433221000 0 001111 115679999964 779999
Q ss_pred EEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEE
Q 001279 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1108)
Q Consensus 266 ~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltv 345 (1108)
++|..+|.+.+||+.... |+. ........||..++|.-. .++..+++.... +
T Consensus 244 aVGts~G~v~iyDLRa~~-----------pl~---~kdh~~e~pi~~l~~~~~------~~q~~v~S~Dk~--------~ 295 (703)
T KOG2321|consen 244 AVGTSTGSVLIYDLRASK-----------PLL---VKDHGYELPIKKLDWQDT------DQQNKVVSMDKR--------I 295 (703)
T ss_pred EeeccCCcEEEEEcccCC-----------cee---ecccCCccceeeeccccc------CCCceEEecchH--------H
Confidence 999999999999998653 221 122334567777877542 233445554443 7
Q ss_pred EeccccccccccceeeeeecCCCCccceEEEecCCC
Q 001279 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1108)
Q Consensus 346 l~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~ 381 (1108)
+++|....-... ........+.++++.|+++
T Consensus 296 ~kiWd~~~Gk~~-----asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 296 LKIWDECTGKPM-----ASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred hhhcccccCCce-----eeccccCCcCceeeecCCc
Confidence 888876532222 4445556788999999854
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2.8e-10 Score=123.70 Aligned_cols=218 Identities=16% Similarity=0.135 Sum_probs=152.1
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc--eEEeCCCCCCEEEEEEeeC--CCEEEEEeCCCcEEEEEcCC
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQN--QGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~d--~~~L~S~s~d~~I~vWd~~s 107 (1108)
-+|++.|..+-|...|.+|++|+.|-+|.+||-.... ..+..+|...|-.-.|.|. ..-+++++.|+.+++=.+..
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 4789999999999999999999999999999985443 3478889888877788884 35789999999999988644
Q ss_pred C-eee---eeecCCCCeeEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 108 R-SLA---CCLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 108 ~-~~~---~~~~~~~~Itsl~~~~~~~-~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
. .+. ....|.++|.-+++.|+.. -++++++|+.+.-+++....-.... +.-..+. .+ .-....+
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~--~cr~~~~-~~--------~v~L~~I 287 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF--VCREADE-KE--------RVGLYTI 287 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee--eeeccCC-cc--------ceeeeeE
Confidence 3 332 2337899999999999875 5778899998877776543211110 1111111 00 1246788
Q ss_pred ecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
+.+|...+ .++++..|-.+++||...-......+. + .....+.+.. ...-.|++++|. .++
T Consensus 288 a~~P~nt~-~faVgG~dqf~RvYD~R~~~~e~~n~~----~-----------~~f~p~hl~~--d~~v~ITgl~Ys-h~~ 348 (559)
T KOG1334|consen 288 AVDPRNTN-EFAVGGSDQFARVYDQRRIDKEENNGV----L-----------DKFCPHHLVE--DDPVNITGLVYS-HDG 348 (559)
T ss_pred ecCCCCcc-ccccCChhhhhhhhcccchhhccccch----h-----------hhcCCccccc--cCcccceeEEec-CCc
Confidence 89997444 599999999999999765432211110 0 0000011111 226689999974 788
Q ss_pred CEEEEEEccCcEEEEec
Q 001279 263 SILAVGYIDGDILLWNT 279 (1108)
Q Consensus 263 ~~l~sg~~DG~I~lWd~ 279 (1108)
.-|++.+.|-.|++++-
T Consensus 349 sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 349 SELLASYNDEDIYLFNK 365 (559)
T ss_pred cceeeeecccceEEecc
Confidence 88999999999999954
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=9e-09 Score=120.97 Aligned_cols=175 Identities=11% Similarity=0.119 Sum_probs=116.5
Q ss_pred CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC---CCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEE
Q 001279 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1108)
Q Consensus 57 G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~---d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~ 133 (1108)
..|.+||.++.....+..+...+...+|+|||.+|+.++. +..|.+||+.+++........+.+.+..|+|++++|+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 3799999988766656667789999999999999987753 3569999999887655445556667889999999887
Q ss_pred EE-eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC-CeEEEE--EccC
Q 001279 134 IG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-ALVILW--DVSE 209 (1108)
Q Consensus 134 vg-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d-g~V~lW--dl~~ 209 (1108)
.. +.+|...||.++...+.+.+ +..+. ..+....|+| +|+.|+.++.+ +...|| |+.+
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~----lt~~~------------~~~~~~~wSP--DG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQ----VTDGR------------SNNTEPTWFP--DSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEE----ccCCC------------CCcCceEECC--CCCEEEEEeCCCCCceEEEEECCC
Confidence 65 55665445555554455543 22221 3467889988 78878776654 444444 6666
Q ss_pred CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC---cEEEEecC
Q 001279 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTS 280 (1108)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG---~I~lWd~~ 280 (1108)
+....+... .....+.+| +|||++|+..+.++ .|.+||+.
T Consensus 321 g~~~~lt~~------------------------------~~~~~~~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 321 GAPQRITWE------------------------------GSQNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred CCeEEeecC------------------------------CCCccCEEE-CCCCCEEEEEEccCCCceEEEEECC
Confidence 654433211 223345666 49999887765432 35555554
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.18 E-value=4.9e-08 Score=111.33 Aligned_cols=192 Identities=16% Similarity=0.222 Sum_probs=119.8
Q ss_pred CEEEE-EECCCcEEEEecCCcceEEeCCCCCCE-EEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEE
Q 001279 48 RLLAI-ATLDGRIKVIGGDGIEGLLISPSQLPY-KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1108)
Q Consensus 48 ~~LA~-Gs~dG~I~iw~~~~~~~~~~~~h~~~V-~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~ 125 (1108)
.++++ -..+|.|.+.|..+.+++...+....+ ..+.|++||++++.++.|+.|.++|+.+++.+...........+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence 34444 445799999999888777554433343 4578999999999999999999999999999999988888899999
Q ss_pred ecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-CCeEE
Q 001279 126 ISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVI 203 (1108)
Q Consensus 126 ~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~ 203 (1108)
+++++++++++ ..+.+.|+|.. +.++.+. ++....... .....+.+|..+| ....++..-. .+.|.
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~--tle~v~~---I~~~~~~~~-----~~~~Rv~aIv~s~--~~~~fVv~lkd~~~I~ 153 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAE--TLEPVKT---IPTGGMPVD-----GPESRVAAIVASP--GRPEFVVNLKDTGEIW 153 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETT--T--EEEE---EE--EE-TT-----TS---EEEEEE-S--SSSEEEEEETTTTEEE
T ss_pred cCCCCEEEEEecCCCceeEeccc--cccceee---ccccccccc-----ccCCCceeEEecC--CCCEEEEEEccCCeEE
Confidence 99999999887 57888777644 3444432 443221000 0124577787766 3443555544 47776
Q ss_pred EEEccCCeEE--EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE-EccCcEEEEecC
Q 001279 204 LWDVSEAQII--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTS 280 (1108)
Q Consensus 204 lWdl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg-~~DG~I~lWd~~ 280 (1108)
+-|....+.. ..... ........|. |+|++++++ ..++.|.++|..
T Consensus 154 vVdy~d~~~~~~~~i~~------------------------------g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKV------------------------------GRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp EEETTTSSCEEEEEEE--------------------------------TTEEEEEE--TTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEeccccccceeeecc------------------------------cccccccccC-cccceeeecccccceeEEEeec
Confidence 6676654322 22211 2334456664 999987665 456788889876
Q ss_pred CC
Q 001279 281 TT 282 (1108)
Q Consensus 281 ~~ 282 (1108)
+.
T Consensus 203 ~~ 204 (369)
T PF02239_consen 203 TG 204 (369)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=5.5e-09 Score=122.75 Aligned_cols=197 Identities=14% Similarity=0.054 Sum_probs=137.8
Q ss_pred CCCCceEEEEcCCCCEEEEEEC---CCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-CCC--cEEEEEcCC
Q 001279 34 IPATASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDN--EIQVWSLES 107 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~---dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~--~I~vWd~~s 107 (1108)
.+..+...+|||||+.||..+. +..|++|++.+.+...+....+.+..+.|+|||.+|+... .++ .|.+||+.+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3567889999999999997653 3579999997766555444455566789999999888663 344 599999999
Q ss_pred CeeeeeecCCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 108 RSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 108 ~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
++..........++...|+|++++|+..+. +|...||.++...+...+ +.... .......|+|
T Consensus 277 g~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~----lt~~~------------~~~~~~~~Sp 340 (429)
T PRK03629 277 GQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR----ITWEG------------SQNQDADVSS 340 (429)
T ss_pred CCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE----eecCC------------CCccCEEECC
Confidence 877665555667889999999998866554 567788887765555443 22111 2355678888
Q ss_pred CCCCCEEEEEECC---CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC
Q 001279 187 NSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1108)
Q Consensus 187 ~~~~~~ll~~~~d---g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1108)
+|+.++....+ ..|.+||+.++....+... ....+..|. |||+
T Consensus 341 --DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-------------------------------~~~~~p~~S-pDG~ 386 (429)
T PRK03629 341 --DGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-------------------------------FLDETPSIA-PNGT 386 (429)
T ss_pred --CCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-------------------------------CCCCCceEC-CCCC
Confidence 78877766544 3578899988865443211 011235664 9999
Q ss_pred EEEEEEccCc---EEEEecC
Q 001279 264 ILAVGYIDGD---ILLWNTS 280 (1108)
Q Consensus 264 ~l~sg~~DG~---I~lWd~~ 280 (1108)
.|+..+.+|. |.+|++.
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEEEEEcCCCceEEEEEECC
Confidence 9999988775 6666664
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.14 E-value=2.8e-10 Score=123.00 Aligned_cols=150 Identities=17% Similarity=0.245 Sum_probs=108.7
Q ss_pred cccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCC
Q 001279 489 TKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1108)
Q Consensus 489 ~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~ 568 (1108)
+.-.|...++-+|+.+|+|.+|.-+..... +.+--|.++|.+|++.++|+|+|+.+.|..|+|||+...
T Consensus 257 m~qNP~NaVih~GhsnGtVSlWSP~skePL-----------vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 257 MKQNPYNAVIHLGHSNGTVSLWSPNSKEPL-----------VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred hhcCCccceEEEcCCCceEEecCCCCcchH-----------HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc
Confidence 355666779999999999999998776644 457789999999999999999999999999999999875
Q ss_pred CCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE-ccC----ceEEEEeec
Q 001279 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD-MNL----LSVLFFTDD 643 (1108)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd-~~~----~~~~~~~~~ 643 (1108)
.. + .++.. .-+...++||..| +||.|..+- |.||. ... ....|..+.
T Consensus 326 ~q------------------------l-~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~-v~iw~d~~~~s~~~~~pYm~H~ 377 (545)
T KOG1272|consen 326 YQ------------------------L-HTYRT-PHPASNLSLSQKG-LLALSYGDH-VQIWKDALKGSGHGETPYMNHR 377 (545)
T ss_pred cc------------------------c-ceeec-CCCcccccccccc-ceeeecCCe-eeeehhhhcCCCCCCcchhhhc
Confidence 21 1 22222 5678889999888 677776654 89994 322 222333333
Q ss_pred CCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCc
Q 001279 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1108)
Q Consensus 644 ~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g 702 (1108)
..++|..|.|.|. .++|-+|..-|.-.++-.-.|
T Consensus 378 ---~~~~V~~l~FcP~----------------------EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 378 ---CGGPVEDLRFCPY----------------------EDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred ---cCcccccceeccH----------------------HHeeeccccCCceeEeccCCC
Confidence 3459999999965 666777766665444443333
No 222
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=6.4e-09 Score=118.75 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=108.1
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCC------------CEEEEEeCCCcEEEE
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGS------------HFMYIGDENGLMSVI 144 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~------------~~l~vg~~dg~V~vw 144 (1108)
.-.++.|+|.| |+..+..+.|.|-|..+-+.+.++ .|+..|+.+.|.|.. -++|+++-.|.|-+|
T Consensus 17 N~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36678889987 777777899999999999998888 466889999998632 367888999999999
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC--CEEEEEECCCeEEEEEccCCeEEEEeCCCccc
Q 001279 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG--NRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1108)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~--~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~ 222 (1108)
|+... ..+ ..+..+. +++..++|-|..+. ..|+.-....++.+||..+|...+-+.+.
T Consensus 95 d~~~~--s~~---~~l~~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys--- 154 (1062)
T KOG1912|consen 95 DFVLA--SVI---NWLSHSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS--- 154 (1062)
T ss_pred Eehhh--hhh---hhhcCCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC---
Confidence 98642 111 1233332 56777787664332 45777788889999999999877655431
Q ss_pred ccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
.....|+.+..-|.+.+..-+..|.+.+-+.-
T Consensus 155 --------------------------~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 155 --------------------------HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred --------------------------CcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 22334455443345666666677777766654
No 223
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=5.2e-06 Score=105.04 Aligned_cols=475 Identities=16% Similarity=0.167 Sum_probs=257.4
Q ss_pred CCceEEEEcCCCCE--EEEEECCC--cEEEEecC--C-cceEEeC------CCCCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 001279 36 ATASILAFDHIQRL--LAIATLDG--RIKVIGGD--G-IEGLLIS------PSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1108)
Q Consensus 36 ~~is~la~sp~~~~--LA~Gs~dG--~I~iw~~~--~-~~~~~~~------~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1108)
..+...+|++.... ++++.... .|.+.... . .+.+... ...+.|.+++|.++...|+.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35667777776554 44443333 23333322 1 1122111 23468999999999999999999999999
Q ss_pred E----EcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC----------C-C--eeeeece-----ee
Q 001279 103 W----SLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD----------E-G--KLFQLPY-----NI 160 (1108)
Q Consensus 103 W----d~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~----------~-~--~l~~~~~-----~i 160 (1108)
. |..+...-..-.....|.|++|+||...|++.+.+|++-+..-+-+ + + +.+...+ .|
T Consensus 102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF 181 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF 181 (928)
T ss_pred EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence 9 6666655554567789999999999999999999998866543210 0 0 0000000 01
Q ss_pred ccccccccc-------CCC------CCCCCCeEEEecccCCCCCEEEEEEC---C---CeEEEEEccCCeEEEEeCCCcc
Q 001279 161 SADALSEKA-------GFP------LLSHQPVVGVLPHPNSSGNRVLIAYE---N---ALVILWDVSEAQIIFVGGGKDL 221 (1108)
Q Consensus 161 ~~~~~~~~~-------~~~------~~~~~~V~~v~f~P~~~~~~ll~~~~---d---g~V~lWdl~~~~~~~~~~~~~~ 221 (1108)
.|.. .|.. ..+ ....+.-..|+| +.||.++++.+- . ..++||+-+ |.+......
T Consensus 182 ~Gs~-gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~--- 254 (928)
T PF04762_consen 182 HGSA-GKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP--- 254 (928)
T ss_pred Ccch-hhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc---
Confidence 1110 0100 000 002345678899 669998888775 3 478899876 444332211
Q ss_pred cccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc---cCcEEEEecCCCCCCCCccCCCCCceee
Q 001279 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI---DGDILLWNTSTTASTKGQQTGSRNNVVK 298 (1108)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~---DG~I~lWd~~~~~~~~~~~~~~~~~~~k 298 (1108)
. .+--.+++|- |.|+.|++... .-.|.+|..+... ...
T Consensus 255 -------------v-------------~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLr------------hge 295 (928)
T PF04762_consen 255 -------------V-------------DGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLR------------HGE 295 (928)
T ss_pred -------------C-------------CCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcE------------eee
Confidence 0 2223468997 99999988865 3467777654331 111
Q ss_pred eecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEec
Q 001279 299 LELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLS 378 (1108)
Q Consensus 299 l~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p 378 (1108)
+.+........+..+.|+. ++.+|+..-.+ .+.+|...+- ..+-...+.++....+..+.+.|
T Consensus 296 F~l~~~~~~~~v~~l~Wn~--------ds~iLAv~~~~--------~vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 296 FTLRFDPEEEKVIELAWNS--------DSEILAVWLED--------RVQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred EecCCCCCCceeeEEEECC--------CCCEEEEEecC--------CceEEEeeCC-EEEEEEEEEccCCCCCCceEECC
Confidence 1222222334566677766 34455554433 3566654421 11111123444444555577877
Q ss_pred CCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHH
Q 001279 379 SAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEI 458 (1108)
Q Consensus 379 ~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~ 458 (1108)
. ++..+.+++.+|++..++-.-.... ....++ ++. ....++ .+..
T Consensus 359 e-------~p~~L~v~t~~g~~~~~~~~~~v~~------s~~~~~---------~D~--g~vaVI--DG~~--------- 403 (928)
T PF04762_consen 359 E-------KPLRLHVLTSNGQYEIYDFAWDVSR------SPGSSP---------NDN--GTVAVI--DGNK--------- 403 (928)
T ss_pred C-------CCCEEEEEecCCcEEEEEEEEEEEe------cCCCCc---------cCc--eEEEEE--eCCe---------
Confidence 6 5567888888788877653211110 000000 000 001110 0000
Q ss_pred HhhccccCCCCccCcccccccC---CcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceee------Eeeecccc-c
Q 001279 459 ATFTKLHSSHTQAGHIKWPLSG---GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKL------ICALDAEV-Q 528 (1108)
Q Consensus 459 ~~~~~~~~~~~~~~~~~wp~~g---g~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~------~~~l~~~~-~ 528 (1108)
..-+++...+...|+.. ..+..+..+++++++..+++-..||+|.+|......... ...+.... .
T Consensus 404 -----lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (928)
T PF04762_consen 404 -----LLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMD 478 (928)
T ss_pred -----EEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccc
Confidence 00012222233333322 223455666888888889999999999999855433210 00000000 0
Q ss_pred eeeccCCCCCeEEEEEEeCCCeEEEEecC---ceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcC
Q 001279 529 GIEVAGSRAPVSTLSFCFINSSLAVGNEF---GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP 605 (1108)
Q Consensus 529 ~~~l~~h~~~Vt~lafs~d~~~Lasg~~d---G~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~ 605 (1108)
......-...+..++|..++..++....+ ..+.++++...... ..........+.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~~~~~~ 536 (928)
T PF04762_consen 479 ISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS----------------------ASVESSTEVDGV 536 (928)
T ss_pred ccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc----------------------eeEEEEeccCce
Confidence 00011123468899999888877766654 67777777443211 122333344667
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCc
Q 001279 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 606 Vtslafspdg~~LavGs~dG~V~vwd~~~~ 635 (1108)
+..+...++...++.=..+|.|..++..+.
T Consensus 537 ~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 537 VLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred EEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 777777777666777788998876665554
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2.6e-08 Score=117.72 Aligned_cols=176 Identities=11% Similarity=0.148 Sum_probs=126.4
Q ss_pred CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC---CCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEE
Q 001279 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1108)
Q Consensus 57 G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~---d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~ 133 (1108)
..|.+||.++.....+..|..++...+|+|||.+|+.++. +..|.+||+.+++......+.+.+.+.+|+|+++.|+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 3788999988877777788889999999999999988874 4679999999987655556677788999999998775
Q ss_pred -EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-CC--eEEEEEccC
Q 001279 134 -IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSE 209 (1108)
Q Consensus 134 -vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg--~V~lWdl~~ 209 (1108)
+.+.+|...||.++...+.+.+ +..+. .......|+| +|.+|+..+. +| .|.+||+.+
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~------------~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTTTR----LTDSP------------AIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred EEEecCCCceEEEEECCCCceEE----ccCCC------------CccCceeEcC--CCCEEEEEECCCCCCeEEEEECCC
Confidence 5566777666666655555543 33222 3356678988 7887776664 33 677888887
Q ss_pred CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC---cEEEEecCC
Q 001279 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTST 281 (1108)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG---~I~lWd~~~ 281 (1108)
+....+..+ ...+....|. |||+.|+....++ .|.+||..+
T Consensus 324 ~~~~~lt~~------------------------------~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 324 SNPRRISFG------------------------------GGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred CCeEEeecC------------------------------CCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCC
Confidence 765544322 3345567775 9999998776542 577777643
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=6.8e-09 Score=122.53 Aligned_cols=198 Identities=16% Similarity=0.125 Sum_probs=135.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEECC---CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEE-EEeCCC--cEEEEEcC
Q 001279 33 GIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDN--EIQVWSLE 106 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~d---G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~-S~s~d~--~I~vWd~~ 106 (1108)
.+...+...+|+||++.||..+.+ ..|++|++.+.+...+..+.+....+.|+|||.+|+ +.+.++ .|.+||+.
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 345668889999999999988744 469999997766655555566667899999998775 445554 59999999
Q ss_pred CCeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 107 s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
+++......+....+..+|+|++++|+.++ .+|...||.++...+...+. ...+ .......|+
T Consensus 281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l--t~~g--------------~~~~~~~~S 344 (433)
T PRK04922 281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL--TFQG--------------NYNARASVS 344 (433)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--ecCC--------------CCccCEEEC
Confidence 987655545555567889999999887665 56666677776554554432 1111 224467898
Q ss_pred cCCCCCEEEEEECCC---eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 186 PNSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg---~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
| +|+.++....++ .|.+||+.+++...+. + ........|. |||
T Consensus 345 p--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~------------------------------~~~~~~p~~s-pdG 390 (433)
T PRK04922 345 P--DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P------------------------------GSLDESPSFA-PNG 390 (433)
T ss_pred C--CCCEEEEEECCCCceeEEEEECCCCCeEECC-C------------------------------CCCCCCceEC-CCC
Confidence 8 788777665443 6899999887654332 1 1112235675 999
Q ss_pred CEEEEEEcc---CcEEEEecC
Q 001279 263 SILAVGYID---GDILLWNTS 280 (1108)
Q Consensus 263 ~~l~sg~~D---G~I~lWd~~ 280 (1108)
+.|+..+.+ +.|.+|+..
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CEEEEEEecCCceEEEEEECC
Confidence 988777653 356777764
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=2.4e-08 Score=105.11 Aligned_cols=208 Identities=14% Similarity=0.187 Sum_probs=135.7
Q ss_pred CCCceEEEEcCC-CCEEEEEECCCcEEEEecCCcce--------------EEeCCCCCCEEEEEEeeCCCEEEEEeC-CC
Q 001279 35 PATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEG--------------LLISPSQLPYKNLEFLQNQGFLISITN-DN 98 (1108)
Q Consensus 35 ~~~is~la~sp~-~~~LA~Gs~dG~I~iw~~~~~~~--------------~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~ 98 (1108)
...|+|+||-|. ++.||+|...| |.||..+.... ++..+...+|++|+|.+||..|++++- |.
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence 456899999995 56899998765 99997642211 122233369999999999999999996 67
Q ss_pred cEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001279 99 EIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1108)
Q Consensus 99 ~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1108)
.|.|||..++..+... ...+.++-+.|+|++.+++.+.-|+..++|.....-.+. ++... .+
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e---rw~lg--------------sg 281 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE---RWILG--------------SG 281 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec---ceecc--------------CC
Confidence 7999999999877665 445679999999999999999999999999754311111 11111 15
Q ss_pred CeEEEecccCCCCCEEEEEECCCeEEEEEccCC-eEEEEeCCCcccccccccCCCCCCCCCcccCcCC---CCCCCCcee
Q 001279 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE---HQPEEKEIS 253 (1108)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Vt 253 (1108)
.|..-.|+| .|.+|+.++.... +||.+.-. +.....+..+ .....+ -..-..... +...-+++.
T Consensus 282 rvqtacWsp--cGsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~-~k~~ll--------iaDL~e~ti~ag~~l~cgeaq 349 (445)
T KOG2139|consen 282 RVQTACWSP--CGSFLLFACSGSP-RLYSLTFDGEDSVFLRPQS-IKRVLL--------IADLQEVTICAGQRLCCGEAQ 349 (445)
T ss_pred ceeeeeecC--CCCEEEEEEcCCc-eEEEEeecCCCccccCccc-ceeeee--------eccchhhhhhcCcccccCccc
Confidence 799999999 6887777766655 56665432 1111100000 000000 000000000 111256889
Q ss_pred EEEeecCCCCEEEEEEccCc
Q 001279 254 ALCWASSSGSILAVGYIDGD 273 (1108)
Q Consensus 254 sl~w~spdg~~l~sg~~DG~ 273 (1108)
+++|. |.|.+|++....+.
T Consensus 350 ~lawD-psGeyLav~fKg~~ 368 (445)
T KOG2139|consen 350 CLAWD-PSGEYLAVIFKGQS 368 (445)
T ss_pred eeeEC-CCCCEEEEEEcCCc
Confidence 99997 99999999877654
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.2e-08 Score=120.49 Aligned_cols=199 Identities=10% Similarity=0.035 Sum_probs=136.4
Q ss_pred CCCCCceEEEEcCCCCEEEEEEC---CCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEE-EEeCCCc--EEEEEcC
Q 001279 33 GIPATASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNE--IQVWSLE 106 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~---dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~-S~s~d~~--I~vWd~~ 106 (1108)
.+...+...+|+|||+.||..+. +..|++|++.+.+...+..+.+.+....|+|||..|+ +.+.++. |.+||+.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 45667899999999999998764 4689999998777666666777888999999998876 4454544 8888999
Q ss_pred CCeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 107 s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
++.......+....+..+|+|++++|+..+ .+|...||.++...+...+ +.... ..+....|+
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~----lt~~~------------~~~~~~~~S 342 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR----ISFGG------------GRYSTPVWS 342 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE----eecCC------------CcccCeEEC
Confidence 887765555666677899999999887665 4565556666554444443 22111 335667898
Q ss_pred cCCCCCEEEEEECC---CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 186 PNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 186 P~~~~~~ll~~~~d---g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
| +|+.|+....+ ..|.+||+.++....+. . ...+.+..|. |||
T Consensus 343 p--dG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~------------------------------~~~~~~p~~s-pDG 388 (435)
T PRK05137 343 P--RGDLIAFTKQGGGQFSIGVMKPDGSGERILT-S------------------------------GFLVEGPTWA-PNG 388 (435)
T ss_pred C--CCCEEEEEEcCCCceEEEEEECCCCceEecc-C------------------------------CCCCCCCeEC-CCC
Confidence 8 78877766543 26778887665432221 1 1124456775 999
Q ss_pred CEEEEEEccC------cEEEEecCC
Q 001279 263 SILAVGYIDG------DILLWNTST 281 (1108)
Q Consensus 263 ~~l~sg~~DG------~I~lWd~~~ 281 (1108)
+.|+..+.++ .|.++++..
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCC
Confidence 9887765532 466666643
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.8e-08 Score=116.95 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=123.2
Q ss_pred CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC---CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEE
Q 001279 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1108)
Q Consensus 57 G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~ 133 (1108)
..|.++|.++.....+..+..++.+.+|+|||.+|+.++.+ ..|.+||+.+++........+.+.+.+|+|+++.|+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 46788888776666666778899999999999999888753 359999999987655545566778999999998886
Q ss_pred -EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-CCeEEEEEc--cC
Q 001279 134 -IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDV--SE 209 (1108)
Q Consensus 134 -vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~lWdl--~~ 209 (1108)
+.+.+|...||.++...+.+.+ +..+. ..+....|+| +|.+|+..+. +|...||.+ .+
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~------------~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLRR----LTQSS------------GIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred EEEccCCCceEEEEECCCCCcEE----CCCCC------------CCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCC
Confidence 4677888889998865554433 32221 3345678988 7887776654 455566654 44
Q ss_pred CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC---cEEEEecCCC
Q 001279 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 282 (1108)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG---~I~lWd~~~~ 282 (1108)
+....+... ........| +|||++|+..+.++ .|.+||+.++
T Consensus 318 g~~~~lt~~------------------------------g~~~~~~~~-SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 318 GAAQRVTFT------------------------------GSYNTSPRI-SPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CceEEEecC------------------------------CCCcCceEE-CCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 443322211 111234566 59999998777655 5999998765
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=120.44 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=90.9
Q ss_pred cceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEE-eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001279 25 NLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1108)
Q Consensus 25 ~~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1108)
+|....++|-. .|..++|+|||++||+-+.||.+|||+++..+++- ...--+...|++|||||+++++++.|.-|.||
T Consensus 281 NPv~~w~~~~g-~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 281 NPVARWHIGEG-SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CccceeEeccc-cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 78888888754 89999999999999999999999999999988773 33345689999999999999999999999999
Q ss_pred EcCCCeeeee-ecCCCCeeEEEEec
Q 001279 104 SLESRSLACC-LKWESNITAFSVIS 127 (1108)
Q Consensus 104 d~~s~~~~~~-~~~~~~Itsl~~~~ 127 (1108)
.+..++++.. ..|.+-|+.++|+|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999988765 58999999999997
No 230
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.03 E-value=2.4e-09 Score=117.38 Aligned_cols=182 Identities=16% Similarity=0.241 Sum_probs=135.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-eee
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLA 111 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~~ 111 (1108)
.|.+.|.|-.|+|+|.-|.+.++||.|++|...+.....+.....+|.|++|.|+..-++-|. .+++.+=-+.-. +++
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i 180 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKII 180 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeeccccccee
Confidence 366778888999999999999999999999998876666667778999999999976665553 555555554433 344
Q ss_pred eeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 112 CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 112 ~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
.-..|.+-|.+++|++.++.+++|++|-..+|||-- |... |+-..|+ -+|++|+|+| + +
T Consensus 181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~---G~~L---f~S~~~e------------y~ITSva~np--d-~ 239 (737)
T KOG1524|consen 181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ---GANL---FTSAAEE------------YAITSVAFNP--E-K 239 (737)
T ss_pred EEeccCcEEEEeecCccccceeecCCceeEEeeccc---Cccc---ccCChhc------------cceeeeeecc--c-c
Confidence 445789999999999999999999999999999843 2222 3344444 7899999998 4 3
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc
Q 001279 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1108)
Q Consensus 192 ~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D 271 (1108)
.++. |...+.+.- . ...+.|..++|. +||..+++|+..
T Consensus 240 ~~~v---------~S~nt~R~~----~----------------------------p~~GSifnlsWS-~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 240 DYLL---------WSYNTARFS----S----------------------------PRVGSIFNLSWS-ADGTQATCGTST 277 (737)
T ss_pred ceee---------eeeeeeeec----C----------------------------CCccceEEEEEc-CCCceeeccccC
Confidence 2333 332222210 0 015678999995 999999999999
Q ss_pred CcEEEEe
Q 001279 272 GDILLWN 278 (1108)
Q Consensus 272 G~I~lWd 278 (1108)
|.+.+=.
T Consensus 278 G~v~~A~ 284 (737)
T KOG1524|consen 278 GQLIVAY 284 (737)
T ss_pred ceEEEee
Confidence 9876543
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2.2e-08 Score=117.81 Aligned_cols=190 Identities=11% Similarity=0.090 Sum_probs=129.9
Q ss_pred CCCCCceEEEEcCCCCEEEEEECC---CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEE-EEeCCCcEEEE--EcC
Q 001279 33 GIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVW--SLE 106 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~d---G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~-S~s~d~~I~vW--d~~ 106 (1108)
..+..+.+.+|+||++.||..+.+ ..|++||+.+.+...+....+.+....|+|||..|+ +.+.++...|| |+.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 456678899999999999988753 459999998766655555556778999999998886 45667776665 455
Q ss_pred CCeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 107 s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
++.......+....+...|+|++++|+..+ .+|...||.++...+...+. ...+ .......|+
T Consensus 273 ~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l--t~~g--------------~~~~~~~~S 336 (427)
T PRK02889 273 GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV--TFTG--------------SYNTSPRIS 336 (427)
T ss_pred CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE--ecCC--------------CCcCceEEC
Confidence 555433334455567789999999877554 46788889887655544332 1111 123456788
Q ss_pred cCCCCCEEEEEECCC---eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 186 PNSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg---~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
| +|+.++..+.++ .|.+||+.+++...+... .......|. |||
T Consensus 337 p--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-------------------------------~~~~~p~~s-pdg 382 (427)
T PRK02889 337 P--DGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-------------------------------TRDESPSFA-PNG 382 (427)
T ss_pred C--CCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-------------------------------CCccCceEC-CCC
Confidence 8 788777666554 689999988865443211 112345775 999
Q ss_pred CEEEEEEccC
Q 001279 263 SILAVGYIDG 272 (1108)
Q Consensus 263 ~~l~sg~~DG 272 (1108)
+.|+..+.++
T Consensus 383 ~~l~~~~~~~ 392 (427)
T PRK02889 383 RYILYATQQG 392 (427)
T ss_pred CEEEEEEecC
Confidence 9988877654
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.02 E-value=5.2e-08 Score=101.37 Aligned_cols=178 Identities=14% Similarity=0.249 Sum_probs=128.9
Q ss_pred CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC-CCeeeeee---cCCCCeeEEEEecCCCEE
Q 001279 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCL---KWESNITAFSVISGSHFM 132 (1108)
Q Consensus 57 G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~-s~~~~~~~---~~~~~Itsl~~~~~~~~l 132 (1108)
..+.|||--....+.+.....+|+++.+.++. ++.+ -++.|.||... .-+.++.+ ..+...++++-.....+|
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 45778885455555666677899999999872 4444 48899999987 33555444 224445555554444455
Q ss_pred E-EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCe-EEEEEccCC
Q 001279 133 Y-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL-VILWDVSEA 210 (1108)
Q Consensus 133 ~-vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~-V~lWdl~~~ 210 (1108)
+ =|-.-|.|+|.++...... .|..|++|+ ..|.||+.+- +|+++++++..|+ |||||..++
T Consensus 152 afPg~k~GqvQi~dL~~~~~~---~p~~I~AH~------------s~Iacv~Ln~--~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN---APSIINAHD------------SDIACVALNL--QGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC---CceEEEccc------------CceeEEEEcC--CccEEEEeccCcEEEEEEEcCCC
Confidence 4 3456799999998753321 245688887 8899999954 8999999999995 689999998
Q ss_pred eEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 211 QIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 211 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
..+. ++.. .....|.+++| ||++++|++.+.-|+|+++.+....
T Consensus 215 ~~l~E~RRG----------------------------~d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 215 TLLQELRRG----------------------------VDRADIYCIAF-SPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEeeeeecC----------------------------CchheEEEEEe-CCCccEEEEEcCCCeEEEEEeecCC
Confidence 6654 3322 11678999996 6999999999999999999997643
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.99 E-value=1.3e-05 Score=91.57 Aligned_cols=149 Identities=17% Similarity=0.253 Sum_probs=94.1
Q ss_pred CcEEEEEc--CCCeee--eeecCCCCeeEEEEecCCCEEEEEeC----CCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001279 98 NEIQVWSL--ESRSLA--CCLKWESNITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1108)
Q Consensus 98 ~~I~vWd~--~s~~~~--~~~~~~~~Itsl~~~~~~~~l~vg~~----dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1108)
+.|.+|++ .++++. .........+.+++++++++|++..+ +|.|..|.++.+.+++.... .++..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~-~~~~~------ 85 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN-SVPSG------ 85 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE-EEEES------
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee-eeccC------
Confidence 67888887 555443 33345567788999999999999987 57899999987767776531 12211
Q ss_pred CCCCCCCCCeEEEecccCCCCCEEEEE-ECCCeEEEEEccC-CeEEEE---eCCCcccccccccCCCCCCCCCcccCcCC
Q 001279 170 GFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSE-AQIIFV---GGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1108)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~dg~V~lWdl~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1108)
....+.++.+| ++.+|+++ +.+|.|.++++.. +.+... ..|... + ...
T Consensus 86 ------g~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-----------------g--~~~ 138 (345)
T PF10282_consen 86 ------GSSPCHIAVDP--DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-----------------G--PNP 138 (345)
T ss_dssp ------SSCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-----------------E--SST
T ss_pred ------CCCcEEEEEec--CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-----------------C--Ccc
Confidence 15578999988 67767666 4689999999987 444322 212000 0 000
Q ss_pred CCCCCCceeEEEeecCCCCEEEEEEc-cCcEEEEecCC
Q 001279 245 HQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTST 281 (1108)
Q Consensus 245 ~~~~~~~Vtsl~w~spdg~~l~sg~~-DG~I~lWd~~~ 281 (1108)
.........++.+ +|+|+++++... ...|.+|++..
T Consensus 139 ~rq~~~h~H~v~~-~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 139 DRQEGPHPHQVVF-SPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp TTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-T
T ss_pred cccccccceeEEE-CCCCCEEEEEecCCCEEEEEEEeC
Confidence 1122455677886 499998887653 33577777653
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.97 E-value=6.8e-07 Score=102.05 Aligned_cols=107 Identities=18% Similarity=0.305 Sum_probs=74.9
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeecCCCCe-eEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001279 90 FLISITNDNEIQVWSLESRSLACCLKWESNI-TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1108)
Q Consensus 90 ~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~I-tsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1108)
++++-..++.|.|.|..+.+.+..+.....+ ..+.++++++++++.+.||.|.++|+.. .++... ++.-
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~--~~~v~~---i~~G----- 77 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT--GKVVAT---IKVG----- 77 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS--SSEEEE---EE-S-----
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc--ccEEEE---EecC-----
Confidence 3455567899999999999999988765554 4467899999999999999999988765 344432 3311
Q ss_pred cCCCCCCCCCeEEEecccCCCCCEEEEE-ECCCeEEEEEccCCeEEEEe
Q 001279 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~dg~V~lWdl~~~~~~~~~ 216 (1108)
....+++++| +|++++++ +..+.+.++|.++.+.+...
T Consensus 78 --------~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 78 --------GNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp --------SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred --------CCcceEEEcC--CCCEEEEEecCCCceeEeccccccceeec
Confidence 3478899977 78877755 57899999999998776543
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.96 E-value=6.4e-08 Score=100.19 Aligned_cols=151 Identities=12% Similarity=0.148 Sum_probs=106.6
Q ss_pred eEEEEcCCCCEEEEEEC---C-------CcEEEEec--CCcce-EEeCCCCCCEEEEEEeeCCCEEEEEe--CCCcEEEE
Q 001279 39 SILAFDHIQRLLAIATL---D-------GRIKVIGG--DGIEG-LLISPSQLPYKNLEFLQNQGFLISIT--NDNEIQVW 103 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~---d-------G~I~iw~~--~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s--~d~~I~vW 103 (1108)
..+.++|+|.+|++=.. | |...||-+ ..... .......++|.+++|+|++..++.+. .+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35788999988776544 1 44555555 33222 23444567899999999999876654 46789999
Q ss_pred EcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC---CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 104 SLESRSLACCLKWESNITAFSVISGSHFMYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 104 d~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~---dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
|++ .+.+..+. ...+..+.|+|++++|++|+. .|.|.+||.+. .+.+.. .. | ..++
T Consensus 89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~---~~-~-------------~~~t 147 (194)
T PF08662_consen 89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKIST---FE-H-------------SDAT 147 (194)
T ss_pred cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeec---cc-c-------------CcEE
Confidence 997 44444443 467789999999999999864 46799999873 233311 11 1 4489
Q ss_pred EEecccCCCCCEEEEEEC------CCeEEEEEccCCeE
Q 001279 181 GVLPHPNSSGNRVLIAYE------NALVILWDVSEAQI 212 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~------dg~V~lWdl~~~~~ 212 (1108)
.+.|+| +|.+|+++.. |..++||+.....+
T Consensus 148 ~~~WsP--dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 148 DVEWSP--DGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEEEcC--CCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 999999 7998888775 67889999975544
No 236
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=3.2e-08 Score=104.23 Aligned_cols=192 Identities=17% Similarity=0.199 Sum_probs=137.2
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee----
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA---- 111 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~---- 111 (1108)
.+.-+|+++.---+|+++.|-.|++|+....+. .+.+..+..|++|+|-|.+.--++++-.+-|.+|........
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNI 179 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccccc
Confidence 455678888666789999999999999866444 355666779999999997655555555677999987543211
Q ss_pred --------eeecCC--CCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 112 --------CCLKWE--SNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 112 --------~~~~~~--~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
..++++ ..|+++.|.+++..+++++ .+..|.||+.+...+... ++ ...+.+.
T Consensus 180 ~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL-----~~------------~glgg~s 242 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL-----IP------------KGLGGFS 242 (445)
T ss_pred ccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc-----cc------------cCCCcee
Confidence 112222 5799999999999998887 577899999887433322 11 1126789
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEE--EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEee
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQII--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1108)
-+.|+| ++..|+++.-|+..+||+....... +..+ .+.|+..||.
T Consensus 243 lLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lg-------------------------------sgrvqtacWs 289 (445)
T KOG2139|consen 243 LLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILG-------------------------------SGRVQTACWS 289 (445)
T ss_pred eEEEcC--CCCEEEEecccceeeeehhcccceecceecc-------------------------------CCceeeeeec
Confidence 999999 7888999999999999976554322 1211 5689999996
Q ss_pred cCCCCEEEEEEccCcEEEEecC
Q 001279 259 SSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
|+|++|+-.+. |.=++|.+.
T Consensus 290 -pcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 290 -PCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred -CCCCEEEEEEc-CCceEEEEe
Confidence 99998776554 444555543
No 237
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.94 E-value=3.3e-09 Score=114.86 Aligned_cols=195 Identities=14% Similarity=0.219 Sum_probs=157.8
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~ 116 (1108)
+...+.|+-+|+.|+.|+..|.|..+|-.+....++..-...|.++.|..+.. ++++.+.+.+.|||-. |.-++++..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq-~~AVAQK~y~yvYD~~-GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ-FFAVAQKKYVYVYDNN-GTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchH-HHHhhhhceEEEecCC-CcEEeehhh
Confidence 46779999999999999999999999998888888877778899999999854 5555678899999964 566677777
Q ss_pred CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEE
Q 001279 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1108)
Q Consensus 117 ~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~ 196 (1108)
...|..+.|-|...+|++++..|.++-.|+.. |+++.. +..- .+.+..+.-+|. ...+-+|
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~--GklVa~---~~t~------------~G~~~vm~qNP~--NaVih~G 269 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVST--GKLVAS---IRTG------------AGRTDVMKQNPY--NAVIHLG 269 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeech--hhhhHH---HHcc------------CCccchhhcCCc--cceEEEc
Confidence 78899999999999999999999776666554 565532 2111 156777778784 4447789
Q ss_pred ECCCeEEEEEccCCeE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEE
Q 001279 197 YENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 275 (1108)
Q Consensus 197 ~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~ 275 (1108)
..+|+|.+|....... +.+..| .++|.+++.. ++|.+++|.+.|..++
T Consensus 270 hsnGtVSlWSP~skePLvKiLcH------------------------------~g~V~siAv~-~~G~YMaTtG~Dr~~k 318 (545)
T KOG1272|consen 270 HSNGTVSLWSPNSKEPLVKILCH------------------------------RGPVSSIAVD-RGGRYMATTGLDRKVK 318 (545)
T ss_pred CCCceEEecCCCCcchHHHHHhc------------------------------CCCcceEEEC-CCCcEEeeccccccee
Confidence 9999999999888765 445556 8899999965 9999999999999999
Q ss_pred EEecCCCC
Q 001279 276 LWNTSTTA 283 (1108)
Q Consensus 276 lWd~~~~~ 283 (1108)
+||+....
T Consensus 319 IWDlR~~~ 326 (545)
T KOG1272|consen 319 IWDLRNFY 326 (545)
T ss_pred Eeeecccc
Confidence 99998654
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.93 E-value=2.4e-08 Score=103.33 Aligned_cols=110 Identities=7% Similarity=0.213 Sum_probs=90.4
Q ss_pred CCCceEEEEcCCCCEEEEE--ECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC---CcEEEEEcCCCe
Q 001279 35 PATASILAFDHIQRLLAIA--TLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRS 109 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~G--s~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWd~~s~~ 109 (1108)
.+.|.+++|+|++..+|+. ..++.|.||+.....+... +..++..+.|+|+|.+|+.++.+ |.|.+||+++.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 3459999999999987665 4568999999985444433 35678899999999999998754 569999999999
Q ss_pred eeeeecCCCCeeEEEEecCCCEEEEEeC------CCcEEEEEEe
Q 001279 110 LACCLKWESNITAFSVISGSHFMYIGDE------NGLMSVIKYD 147 (1108)
Q Consensus 110 ~~~~~~~~~~Itsl~~~~~~~~l~vg~~------dg~V~vw~~d 147 (1108)
.+....+.. ++.++|+|++++++++.. |..++||++.
T Consensus 137 ~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 137 KISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 888877665 789999999999998874 6778999987
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.4e-07 Score=111.44 Aligned_cols=175 Identities=14% Similarity=0.072 Sum_probs=119.5
Q ss_pred CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC---CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEE
Q 001279 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1108)
Q Consensus 57 G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~ 133 (1108)
..|.+||.++.....+..|..++...+|+||+.+|+.++.+ ..|.+||+.+++........+...+.+|+|++++|+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 46899999887766667778899999999999999988743 469999999887655445556667889999998776
Q ss_pred E-EeCCCc--EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-CCe--EEEEEc
Q 001279 134 I-GDENGL--MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NAL--VILWDV 207 (1108)
Q Consensus 134 v-g~~dg~--V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~--V~lWdl 207 (1108)
. .+.+|. |++|+++ .+.+.+ +..+. .......|+| +|++|+.++. +|. |.++|+
T Consensus 264 ~~~s~~g~~~Iy~~d~~--~g~~~~----lt~~~------------~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLG--SRQLTR----LTNHF------------GIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred EEEeCCCCceEEEEECC--CCCeEE----CccCC------------CCccceEECC--CCCEEEEEECCCCCceEEEEEC
Confidence 4 456665 5555544 344443 22221 2345678988 7887777664 444 566677
Q ss_pred cCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC---cEEEEecCCC
Q 001279 208 SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 282 (1108)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG---~I~lWd~~~~ 282 (1108)
.+++...+... .......+| +|||+.|+..+.++ .|.+||+.++
T Consensus 324 ~~g~~~~lt~~------------------------------g~~~~~~~~-SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 324 SGGSAERLTFQ------------------------------GNYNARASV-SPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCCCeEEeecC------------------------------CCCccCEEE-CCCCCEEEEEECCCCceeEEEEECCCC
Confidence 66654433211 122335677 49999998776543 5899998655
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=3e-08 Score=110.15 Aligned_cols=201 Identities=11% Similarity=0.194 Sum_probs=151.2
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCC-CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~ 112 (1108)
+|.--..|+|+.-..-|.+|+....|+-++++....+.-.. ..+++.++..++-.++|++++.+|.|.+||.+++..+.
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 55556678887544444444446678888887666654333 33789999999988888888889999999999987766
Q ss_pred eec-------CCC-----CeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 113 CLK-------WES-----NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 113 ~~~-------~~~-----~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
.+. +++ .||++.|+.++-.+++|+..|.|.|+|+.... |+-+..|.. .-+|.
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~------pl~~kdh~~----------e~pi~ 275 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK------PLLVKDHGY----------ELPIK 275 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC------ceeecccCC----------cccee
Confidence 553 222 49999999999999999999999999987633 233444431 15699
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
.+.|.+.++++ .++......++|||-.+++....... ...+..+|++ |
T Consensus 276 ~l~~~~~~~q~-~v~S~Dk~~~kiWd~~~Gk~~asiEp------------------------------t~~lND~C~~-p 323 (703)
T KOG2321|consen 276 KLDWQDTDQQN-KVVSMDKRILKIWDECTGKPMASIEP------------------------------TSDLNDFCFV-P 323 (703)
T ss_pred eecccccCCCc-eEEecchHHhhhcccccCCceeeccc------------------------------cCCcCceeee-c
Confidence 99999885555 55556667889999999987766544 5568889988 8
Q ss_pred CCCEEEEEEccCcEEEEecCCC
Q 001279 261 SGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
++..++++-.++.+..|-++..
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEEecCCCcceeEEcccc
Confidence 9999999999998888877654
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.91 E-value=7.6e-07 Score=98.22 Aligned_cols=161 Identities=12% Similarity=0.187 Sum_probs=110.6
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC---------------C
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---------------N 98 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---------------~ 98 (1108)
..-.+....+||.|.+||.....| |.+|+......+....|. .|..+.|+|++.+|.+=+.. +
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeecC-CceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 555677899999999999988765 999999877777666665 59999999999999986654 3
Q ss_pred cEEEEEcCCCeeeeeecCCC-C--ee-EEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001279 99 EIQVWSLESRSLACCLKWES-N--IT-AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 99 ~I~vWd~~s~~~~~~~~~~~-~--It-sl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
.+.|||+.++.++..+.... + .. -+.|+-+.+|+|-- -..+++|+++ + ..+.+.|+..-
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t--~n~~~~p~~~l------------- 171 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-T--DNIEEHPFKNL------------- 171 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-C--CccccCchhhc-------------
Confidence 49999999999998874322 2 33 56777777776644 2345677775 2 23332222111
Q ss_pred CCCCeEEEecccCCCCCEEEE-----EECCCeEEEEEccCCeEE
Q 001279 175 SHQPVVGVLPHPNSSGNRVLI-----AYENALVILWDVSEAQII 213 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~-----~~~dg~V~lWdl~~~~~~ 213 (1108)
....|...+|+|..++..|+. ....+++++|.+..++.+
T Consensus 172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 125688888888655553332 234668888888766554
No 242
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.90 E-value=2.8e-05 Score=98.52 Aligned_cols=233 Identities=13% Similarity=0.072 Sum_probs=136.5
Q ss_pred ccCCCCcEEEEEec---C---CcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEec---CceE
Q 001279 490 KCHSVDRVYLAGYH---D---GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE---FGLV 560 (1108)
Q Consensus 490 ~~s~~~~llatgs~---D---GtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~---dG~V 560 (1108)
....||+++|+.+- + ..||||+-+ +.+.... . ++. +-=.+|+|.|.|+++|+.-. .-.|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS--E-~v~--------gLe~~l~WrPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS--E-PVD--------GLEGALSWRPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc--c-cCC--------CccCCccCCCCCCEEEEEEEcCCCcEE
Confidence 45678888887753 3 359999977 4433111 0 111 12346899999999998775 3455
Q ss_pred EEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEE
Q 001279 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFF 640 (1108)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~ 640 (1108)
.+|.-+..... + ....+......|..|+|++|+..||+-..|. |.+|...+...-++
T Consensus 284 vFfErNGLrhg-------------------e---F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 284 VFFERNGLRHG-------------------E---FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred EEEecCCcEee-------------------e---EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence 55554443211 0 1111223466799999999999999988777 99999988765433
Q ss_pred eecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccceeeE
Q 001279 641 TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAIS 720 (1108)
Q Consensus 641 ~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~~~~~ 720 (1108)
-.........+..+.|++. ....|.+++.+|.+..++..--...+.+ ..+...-.
T Consensus 341 qei~~~~~~~~~~~~Wdpe---------------------~p~~L~v~t~~g~~~~~~~~~~v~~s~~----~~~~D~g~ 395 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPE---------------------KPLRLHVLTSNGQYEIYDFAWDVSRSPG----SSPNDNGT 395 (928)
T ss_pred EEEEccCCCCCCceEECCC---------------------CCCEEEEEecCCcEEEEEEEEEEEecCC----CCccCceE
Confidence 2222233444556889853 1345888888888866664321111111 11122334
Q ss_pred EEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecCeeEEEeccc
Q 001279 721 MEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKS 799 (1108)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~~~~v~sl~~ 799 (1108)
..++|+....+.+.....=|||.....-+ -.+.++.+.|.... +.++++-++..+.+|.++.
T Consensus 396 vaVIDG~~lllTpf~~a~VPPPMs~~~l~----------------~~~~v~~vaf~~~~-~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 396 VAVIDGNKLLLTPFRRAVVPPPMSSYELE----------------LPSPVNDVAFSPSN-SRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEEEeCCeEEEecccccCCCchHhceEEc----------------CCCCcEEEEEeCCC-CeEEEEECCCCEEEEEecC
Confidence 77888887756655555555554211111 22345556665441 2266677777788887544
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=3.4e-06 Score=95.99 Aligned_cols=215 Identities=19% Similarity=0.175 Sum_probs=147.2
Q ss_pred eeeCCCCCc--eEEEEcCCCCEEEEEECCCcEEEEecCCcc------e----------EEeCCCCCCEEEEEEeeCCCEE
Q 001279 30 VHYGIPATA--SILAFDHIQRLLAIATLDGRIKVIGGDGIE------G----------LLISPSQLPYKNLEFLQNQGFL 91 (1108)
Q Consensus 30 ~~~G~~~~i--s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~------~----------~~~~~h~~~V~~l~fs~d~~~L 91 (1108)
...|+|..+ .|++|+..+.++|+|+.||.+++..+++.. . ..+-+|++.|.-+.|..+.+.|
T Consensus 7 kki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 7 KKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred cccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 445777664 689999999999999999999998763221 0 1345799999999999998889
Q ss_pred EEEeCCCcEEEEEcCCCeeeeee---cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001279 92 ISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1108)
Q Consensus 92 ~S~s~d~~I~vWd~~s~~~~~~~---~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1108)
-+...+|-|.||-+-.+.-...+ ...+.|.+++|+.+|..+.+..+||.|-|=.+|.. + |-+.++..
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN--R-------IwgKeLkg- 156 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN--R-------IWGKELKG- 156 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc--e-------ecchhcch-
Confidence 88889999999999887655444 34567999999999999999999998876666532 1 11111100
Q ss_pred cCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCC
Q 001279 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1108)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1108)
.-...+.|+| |..+++.+-.+|.+.++|-...-...+ +..+++. -.+..+. .
T Consensus 157 --------~~l~hv~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl------~~~c~Vn--~tg~~s~----------~ 208 (1189)
T KOG2041|consen 157 --------QLLAHVLWSE--DLEQALFKKANGETHLYDNQGNFERKL------EKDCEVN--GTGIFSN----------F 208 (1189)
T ss_pred --------heccceeecc--cHHHHHhhhcCCcEEEecccccHHHhh------hhceEEe--eeeeecC----------C
Confidence 2256788977 666678888899999999766421100 0000000 0000000 0
Q ss_pred CCceeEEEee-------cCCCCEEEEEEccCcEEEEecCCC
Q 001279 249 EKEISALCWA-------SSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 249 ~~~Vtsl~w~-------spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...|..++|+ .||...|++++.+|...+-.-.+.
T Consensus 209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 3346777776 357788999999998887655443
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.88 E-value=4.8e-07 Score=106.84 Aligned_cols=177 Identities=14% Similarity=0.140 Sum_probs=120.9
Q ss_pred CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC---CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEE
Q 001279 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1108)
Q Consensus 57 G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~ 133 (1108)
..|.++|.++.....+..+...+....|+|||.+|+.++.+ ..|.+||+.+++......+.+.+.+++|+|+++.|+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 36888888766655566677789999999999999988754 479999999987655555666777899999998776
Q ss_pred E-EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC-C--eEEEEEccC
Q 001279 134 I-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSE 209 (1108)
Q Consensus 134 v-g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d-g--~V~lWdl~~ 209 (1108)
. .+.++...||.++...+...+ +..+. .......|+| ++.+|+..+.. + .|.++|+.+
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~~~----l~~~~------------~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQLTR----LTNGP------------GIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred EEECCCCCccEEEEECCCCCEEE----CCCCC------------CCCCCEEECC--CCCEEEEEECCCCCceEEEEECCC
Confidence 4 455565444544443344432 22221 2234567877 78777766553 3 577778877
Q ss_pred CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC---cEEEEecCCC
Q 001279 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 282 (1108)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG---~I~lWd~~~~ 282 (1108)
++...+..+ ...+....|. |+|++|+.++.++ .|.+||+.++
T Consensus 312 ~~~~~l~~~------------------------------~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 312 GEVRRLTFR------------------------------GGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCEEEeecC------------------------------CCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCC
Confidence 765443322 2344566774 9999999888776 7888887653
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.88 E-value=2e-07 Score=110.15 Aligned_cols=189 Identities=13% Similarity=0.059 Sum_probs=129.2
Q ss_pred CCCCceEEEEcCCCCEEEEEECC---CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEE-eCC--CcEEEEEcCC
Q 001279 34 IPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TND--NEIQVWSLES 107 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~d---G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~-s~d--~~I~vWd~~s 107 (1108)
....+...+|+|++++||.++.+ ..|++|++.+.....+..+.+.+..++|+||+..|+.. +.+ ..|.+||+.+
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 34457788999999999998755 47999999776655555666777889999999877654 433 3599999998
Q ss_pred CeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 108 RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 108 ~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
+.......+........|+|++++|+..+ ..|...||.++...+...+ +..+. ..+....|+|
T Consensus 268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~----l~~~~------------~~~~~~~~sp 331 (417)
T TIGR02800 268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR----LTFRG------------GYNASPSWSP 331 (417)
T ss_pred CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCC------------CCccCeEECC
Confidence 86655545555556778999999887654 4555456666554444432 22111 3466778988
Q ss_pred CCCCCEEEEEECCC---eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC
Q 001279 187 NSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1108)
Q Consensus 187 ~~~~~~ll~~~~dg---~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1108)
++++++.+..++ .|.+||+.++....+... .......| +|||+
T Consensus 332 --dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-------------------------------~~~~~p~~-spdg~ 377 (417)
T TIGR02800 332 --DGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-------------------------------GLDESPSF-APNGR 377 (417)
T ss_pred --CCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-------------------------------CCCCCceE-CCCCC
Confidence 678788887776 788999887654333211 11123455 49999
Q ss_pred EEEEEEccC
Q 001279 264 ILAVGYIDG 272 (1108)
Q Consensus 264 ~l~sg~~DG 272 (1108)
.|+..+.++
T Consensus 378 ~l~~~~~~~ 386 (417)
T TIGR02800 378 MILYATTRG 386 (417)
T ss_pred EEEEEEeCC
Confidence 988887765
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=4.2e-08 Score=104.69 Aligned_cols=165 Identities=19% Similarity=0.240 Sum_probs=132.1
Q ss_pred CCCCcEEEEEecC--CcEEEEeCCCCceeeEeeeccccceeeccCCC--CCeEEEEEEeC--CCeEEEEecCceEEEEEe
Q 001279 492 HSVDRVYLAGYHD--GSVRIWDATYPVFKLICALDAEVQGIEVAGSR--APVSTLSFCFI--NSSLAVGNEFGLVYIYNL 565 (1108)
Q Consensus 492 s~~~~llatgs~D--GtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~--~~Vt~lafs~d--~~~Lasg~~dG~V~lw~l 565 (1108)
..+..++++|+.. ..++|||+... .+++..+....+ .-+-. .-++++.|-+. ...||+++..+.||+||.
T Consensus 158 ~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD--~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt 233 (412)
T KOG3881|consen 158 DTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPND--RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDT 233 (412)
T ss_pred CCCCceEecCchhcccceeeeecccc--eeeeeccCCCCc--cccceeeeeeccceecCCCCCceEEEEecceeEEEecC
Confidence 3445578889998 78999999877 445554431111 11111 24578889887 889999999999999999
Q ss_pred cCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCC
Q 001279 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1108)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~ 645 (1108)
..... ++..|.....+|+++..-|+++++.+|..-|.+..+|++++.++- ..+.
T Consensus 234 ~~qRR------------------------PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g--~~~k 287 (412)
T KOG3881|consen 234 RHQRR------------------------PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG--CGLK 287 (412)
T ss_pred cccCc------------------------ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeec--cccC
Confidence 86533 567777788999999999999999999999999999999998872 3477
Q ss_pred CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
+..+.|.++.-. |...+|++++-|.-|+|+|..+..+|...
T Consensus 288 g~tGsirsih~h----------------------p~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 288 GITGSIRSIHCH----------------------PTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred CccCCcceEEEc----------------------CCCceEEeeccceeEEEeecccchhhhhh
Confidence 899999999888 55789999999999999999998887654
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.86 E-value=6e-08 Score=101.67 Aligned_cols=206 Identities=17% Similarity=0.235 Sum_probs=159.6
Q ss_pred eeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecC--Cc---ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEE
Q 001279 27 RIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD--GI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1108)
Q Consensus 27 ~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~--~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~ 101 (1108)
+...++-.|..++++.|.+..+.|.+|-..|.+.-|.+. .. .......|..+|..+-|+--...+++.+.|..+.
T Consensus 60 wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~ 139 (404)
T KOG1409|consen 60 WPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA 139 (404)
T ss_pred CchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE
Confidence 344556789999999999999999999999999998762 11 2234567999999999998888999999888776
Q ss_pred EEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001279 102 VWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 102 vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
---.+++..+..+.....-+++.++-. +.++|...|.|....+....-.+. +++.+|. +.+++
T Consensus 140 ~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i---~~~~~h~------------~~~~~ 202 (404)
T KOG1409|consen 140 WHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLI---TTFNGHT------------GEVTC 202 (404)
T ss_pred EEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceE---EEEcCcc------------cceEE
Confidence 555667766665554444445555444 888999999998888876544444 5677776 88999
Q ss_pred EecccCCCCCEEEEEECCCeEEEEEccCCeE--EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeec
Q 001279 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1108)
+.|.| ...+|++++.|..|.+||+-..+. ....+| ...|..+++.
T Consensus 203 l~Wd~--~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh------------------------------~~kV~~l~~~- 249 (404)
T KOG1409|consen 203 LKWDP--GQRLLFSGASDHSVIMWDIGGRKGTAYELQGH------------------------------NDKVQALSYA- 249 (404)
T ss_pred EEEcC--CCcEEEeccccCceEEEeccCCcceeeeeccc------------------------------hhhhhhhhhh-
Confidence 99977 455699999999999999876644 445666 6677778866
Q ss_pred CCCCEEEEEEccCcEEEEecCCC
Q 001279 260 SSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+--+.+.+++.||.|.+|+++..
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhheeeeeccCCCeEEEEeccce
Confidence 66788999999999999999743
No 248
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=2.4e-05 Score=89.27 Aligned_cols=122 Identities=15% Similarity=0.279 Sum_probs=88.7
Q ss_pred CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec----------eeecccccccccCCCCCCCCCeEEEeccc
Q 001279 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP----------YNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 117 ~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~----------~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
.....|+.|+....|+++|+.||.++|.+++++...+...+ .++.+ |.+.|.-+.|+-
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG------------H~~sV~vvTWNe 81 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG------------HNASVMVVTWNE 81 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc------------CcceEEEEEecc
Confidence 35678999999999999999999999999987543322211 12333 348899999954
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE
Q 001279 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1108)
Q Consensus 187 ~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1108)
....|-+...+|.|.||=+=.+.-..-.-. .-....|.+++|. .||+.|.
T Consensus 82 --~~QKLTtSDt~GlIiVWmlykgsW~EEMiN---------------------------nRnKSvV~SmsWn-~dG~kIc 131 (1189)
T KOG2041|consen 82 --NNQKLTTSDTSGLIIVWMLYKGSWCEEMIN---------------------------NRNKSVVVSMSWN-LDGTKIC 131 (1189)
T ss_pred --ccccccccCCCceEEEEeeecccHHHHHhh---------------------------CcCccEEEEEEEc-CCCcEEE
Confidence 555588888999999998655532211000 0015678999998 8999999
Q ss_pred EEEccCcEEEEecC
Q 001279 267 VGYIDGDILLWNTS 280 (1108)
Q Consensus 267 sg~~DG~I~lWd~~ 280 (1108)
..+.||.|.+=.+.
T Consensus 132 IvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 132 IVYEDGAVIVGSVD 145 (1189)
T ss_pred EEEccCCEEEEeec
Confidence 99999999886654
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=5.8e-07 Score=106.17 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=108.0
Q ss_pred CCCceEEEEcCCCCEEEEEECC---CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEE-eCCCc--EEEEEcCCC
Q 001279 35 PATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TNDNE--IQVWSLESR 108 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~d---G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~-s~d~~--I~vWd~~s~ 108 (1108)
+..+...+|+|||+.||..+.+ ..|++||+.+.+...+....+......|+|||..|+.. +.++. |.+||+.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 4556788999999999887643 35888898766554444334445678999999988754 44554 888899888
Q ss_pred eeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC
Q 001279 109 SLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1108)
Q Consensus 109 ~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1108)
+......+.......+|+|++++|+..+ .+|...||.++..+++..... ..+ .......|+|
T Consensus 297 ~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt--~~g--------------~~~~~~~~Sp- 359 (448)
T PRK04792 297 ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT--FEG--------------EQNLGGSITP- 359 (448)
T ss_pred CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe--cCC--------------CCCcCeeECC-
Confidence 7655555555677889999999876654 466777887776655554321 111 1233457888
Q ss_pred CCCCEEEEEEC-CC--eEEEEEccCCeEE
Q 001279 188 SSGNRVLIAYE-NA--LVILWDVSEAQII 213 (1108)
Q Consensus 188 ~~~~~ll~~~~-dg--~V~lWdl~~~~~~ 213 (1108)
+|+.|+.... ++ .|.++|+.+++..
T Consensus 360 -DG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 360 -DGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred -CCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 6776665544 44 4555777777654
No 250
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=7.2e-08 Score=106.38 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=124.5
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee--cCCCCeeEEEEecCC--CEEEEEeCCCcEEEEEE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGS--HFMYIGDENGLMSVIKY 146 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~--~~~~~Itsl~~~~~~--~~l~vg~~dg~V~vw~~ 146 (1108)
.+.+|++-|.+|.|+.||.+|+|+|+|-.+.|||.-..++++++ +|...|.++.|-|.. ..+++|..|..|+++++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 45689999999999999999999999999999999999998887 789999999999864 68899999999999998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe--CCCccccc
Q 001279 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLK 224 (1108)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~--~~~~~~~~ 224 (1108)
+...+.-. .|...+....-.-+...|..++.-|.. ...+.+++.||+++-+|+++...-..- .+..+..
T Consensus 125 ~~~~~~~~-------d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n- 195 (758)
T KOG1310|consen 125 DSSKEGGM-------DHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN- 195 (758)
T ss_pred cccccccc-------ccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHH-
Confidence 85211100 011111111111122667788887752 355999999999999999874221100 0000000
Q ss_pred ccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
.- ...-...|+.-...+..+|++|+.|--.++||..
T Consensus 196 -------------y~-------~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 196 -------------YN-------PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred -------------hc-------hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 00 0012344555333456789999999999999953
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=9.3e-07 Score=104.69 Aligned_cols=164 Identities=14% Similarity=0.079 Sum_probs=111.5
Q ss_pred CCCCCceEEEEcCCCCEEEEEECC---CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEE-EeCCC--cEEEEEcC
Q 001279 33 GIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLIS-ITNDN--EIQVWSLE 106 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~d---G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S-~s~d~--~I~vWd~~ 106 (1108)
.....+...+|+|||+.||..+.+ ..|++|++++.+...+....+.+....|+|||.+|+. .+.++ .|.+||+.
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 334567888999999999887644 4689999987665555555556678999999988874 44444 58899999
Q ss_pred CCeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 107 s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
++.......+....+...|+|+++.++..+ .+|...||.++...+...+. ...+ .......|+
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l--t~~~--------------~~~~~~~~S 339 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV--TFVG--------------NYNARPRLS 339 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe--ecCC--------------CCccceEEC
Confidence 887655445556677789999998776554 45666666666555554432 1111 112345787
Q ss_pred cCCCCCEEEEEECC-C--eEEEEEccCCeEEE
Q 001279 186 PNSSGNRVLIAYEN-A--LVILWDVSEAQIIF 214 (1108)
Q Consensus 186 P~~~~~~ll~~~~d-g--~V~lWdl~~~~~~~ 214 (1108)
| +++.++....+ + .|.+||+.+++...
T Consensus 340 p--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 340 A--DGKTLVMVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred C--CCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence 7 67767665543 3 57889998876543
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.77 E-value=1.7e-05 Score=95.19 Aligned_cols=152 Identities=12% Similarity=0.199 Sum_probs=118.4
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEE-----EEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAF-----SVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl-----~~~~~~~~l~vg~~dg~V~vw~~d~~~~~ 152 (1108)
+|..-.+.....+++.++.++.+-+||+..+..+...++....+-. -.++..-+++.|+.-+.|.+|+...+. .
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~ 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-K 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-C
Confidence 4444555556678999999999999999998888777776543222 223455689999999999999987322 2
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEE--EEeCCCcccccccccCC
Q 001279 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII--FVGGGKDLQLKDGVVDS 230 (1108)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~--~~~~~~~~~~~~~~~~~ 230 (1108)
. ..+.+|+ +.+.++.|+- +|.++++.+.|.++|+|++++.+.. ..++|
T Consensus 168 p----~~l~GHe------------G~iF~i~~s~--dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH------------ 217 (967)
T KOG0974|consen 168 P----IRLKGHE------------GSIFSIVTSL--DGRYIASVSDDRSIRLWPIDSREVLGCTGFGH------------ 217 (967)
T ss_pred c----ceecccC------------CceEEEEEcc--CCcEEEEEecCcceeeeecccccccCcccccc------------
Confidence 2 2366777 8999999954 8999999999999999999998764 35666
Q ss_pred CCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
..+|..+|++ |+ .+++++.|-+.++|+...
T Consensus 218 ------------------saRvw~~~~~-~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 218 ------------------SARVWACCFL-PN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred ------------------cceeEEEEec-cc--eeEEeccceEEEEEeccc
Confidence 7889999976 66 899999999999996653
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=9.5e-07 Score=103.50 Aligned_cols=197 Identities=14% Similarity=0.064 Sum_probs=125.4
Q ss_pred CceEEEEcCCCCEEE---EEECCC--cEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC-CC----cEEEEEcC
Q 001279 37 TASILAFDHIQRLLA---IATLDG--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DN----EIQVWSLE 106 (1108)
Q Consensus 37 ~is~la~sp~~~~LA---~Gs~dG--~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~----~I~vWd~~ 106 (1108)
.+..-+|+|||+.++ +...+| .|++.++++.+...+....+.....+|+|||.+|+..+. ++ .+.+||+.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 345679999997533 444444 577778877666555555666677899999999887764 22 34457876
Q ss_pred CC---eeeeeecC-CCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecC--CCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 107 SR---SLACCLKW-ESNITAFSVISGSHFMYIGD-ENGLMSVIKYDAD--EGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 107 s~---~~~~~~~~-~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~--~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
.+ ........ .+..+..+|+|++++|+..+ .+|...||.++.. .+... .+.... ..+
T Consensus 266 ~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~----~lt~~~------------~~~ 329 (428)
T PRK01029 266 TGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR----LLTKKY------------RNS 329 (428)
T ss_pred cCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE----EeccCC------------CCc
Confidence 53 32223322 23456789999999777654 5776677776542 12222 122221 346
Q ss_pred EEEecccCCCCCEEEEEECC---CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 180 VGVLPHPNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~d---g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
....|+| +|++|+....+ ..|.+||+.+++...+... ...+.+..
T Consensus 330 ~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~------------------------------~~~~~~p~ 377 (428)
T PRK01029 330 SCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS------------------------------PENKESPS 377 (428)
T ss_pred cceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC------------------------------CCCccceE
Confidence 6788988 78877765543 3689999998876544321 22345678
Q ss_pred eecCCCCEEEEEEc---cCcEEEEecCCC
Q 001279 257 WASSSGSILAVGYI---DGDILLWNTSTT 282 (1108)
Q Consensus 257 w~spdg~~l~sg~~---DG~I~lWd~~~~ 282 (1108)
|. |||+.|+.... .+.|.+||+.++
T Consensus 378 wS-pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 378 WA-IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EC-CCCCEEEEEECCCCCceEEEEECCCC
Confidence 85 99998875443 346778887654
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=1.8e-06 Score=102.28 Aligned_cols=176 Identities=11% Similarity=0.045 Sum_probs=117.7
Q ss_pred cEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC---CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEE-
Q 001279 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY- 133 (1108)
Q Consensus 58 ~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~- 133 (1108)
+|.++|.++.....+..+..++....|+|||.+|+.++.+ ..|.+||+.+++........+.+.+.+|+|++++|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 4788888877666666777899999999999999887754 369999999887655445556667899999999887
Q ss_pred EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-CC--eEEEEEccCC
Q 001279 134 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 210 (1108)
Q Consensus 134 vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg--~V~lWdl~~~ 210 (1108)
+.+.+|...||.++...+...+ +..+. .......|+| +|+.++..+. +| .|.++|+.++
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~~----lt~~~------------~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLSR----VTNHP------------AIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred EEccCCCceEEEEECCCCCeEE----cccCC------------CCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 4555665555655554455443 22221 2345567888 6777766654 33 5677788777
Q ss_pred eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc-C--cEEEEecCCC
Q 001279 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-G--DILLWNTSTT 282 (1108)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D-G--~I~lWd~~~~ 282 (1108)
+...+... ........| +|||+.|+..+.+ | .|.+||+.++
T Consensus 322 ~~~~lt~~------------------------------~~~~~~~~~-Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 322 RAERVTFV------------------------------GNYNARPRL-SADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CEEEeecC------------------------------CCCccceEE-CCCCCEEEEEEccCCceEEEEEECCCC
Confidence 65433211 111223566 4999998877653 3 4778887654
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.3e-05 Score=87.99 Aligned_cols=142 Identities=11% Similarity=0.164 Sum_probs=84.9
Q ss_pred EEEEECCCcEEEEecCC-cceEEeCCC---CCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEE
Q 001279 50 LAIATLDGRIKVIGGDG-IEGLLISPS---QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1108)
Q Consensus 50 LA~Gs~dG~I~iw~~~~-~~~~~~~~h---~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~ 125 (1108)
+|+=+. -.+.+|+... .......++ ..++...+++++| +|+..+.+..+.|.++.+...+.+.... .+.++-|
T Consensus 5 ~aVRsS-e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G-~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~f 81 (566)
T KOG2315|consen 5 YAVRSS-EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNG-RLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLF 81 (566)
T ss_pred EEEEcc-ceeEEeccCCccccccccccCCCCCcceeEEEcCCC-cEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeee
Confidence 444433 3388888754 333333333 3467778888885 5666677899999999998655444444 8999999
Q ss_pred ecCCCEEEEE-------eC---CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEE
Q 001279 126 ISGSHFMYIG-------DE---NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1108)
Q Consensus 126 ~~~~~~l~vg-------~~---dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1108)
+|.+.+|.+= .. .-.+.+|+..+ +... +.|... .... .+..|++ +.. |++
T Consensus 82 SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~---s~~q~k-----------~Q~~-W~~qfs~--dEs-l~a 141 (566)
T KOG2315|consen 82 SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GVQR---SQIQKK-----------MQNG-WVPQFSI--DES-LAA 141 (566)
T ss_pred cccccccccccccccccCCCCCCCceeeeeecc--ceeh---hheehh-----------hhcC-ccccccc--chh-hhh
Confidence 9999988542 11 12455777664 2221 112110 0011 3667755 443 444
Q ss_pred EECCCeEEEEEccCCeEEE
Q 001279 196 AYENALVILWDVSEAQIIF 214 (1108)
Q Consensus 196 ~~~dg~V~lWdl~~~~~~~ 214 (1108)
--..+.+.+|++.+.+.+.
T Consensus 142 rlv~nev~f~~~~~f~~~~ 160 (566)
T KOG2315|consen 142 RLVSNEVQFYDLGSFKTIQ 160 (566)
T ss_pred hhhcceEEEEecCCcccee
Confidence 4456678899988765443
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=4.7e-07 Score=96.88 Aligned_cols=187 Identities=14% Similarity=0.180 Sum_probs=139.7
Q ss_pred CCEEEEEECCCcEEEEecCC----cceEEeCCCCCCEEEEEEeeCCCEE-EEEeCC--CcEEEEEcCCCeeeeeecC---
Q 001279 47 QRLLAIATLDGRIKVIGGDG----IEGLLISPSQLPYKNLEFLQNQGFL-ISITND--NEIQVWSLESRSLACCLKW--- 116 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~----~~~~~~~~h~~~V~~l~fs~d~~~L-~S~s~d--~~I~vWd~~s~~~~~~~~~--- 116 (1108)
...|.+|..+|.+.+|.... .+.+....-..++..|.-++...++ ++++.. +.+++||++..+.+.+...
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn 194 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN 194 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence 45777889999999998752 2222333333567777777755544 557778 8899999998866654421
Q ss_pred -------CCCeeEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC
Q 001279 117 -------ESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1108)
Q Consensus 117 -------~~~Itsl~~~~~--~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1108)
+--++.+.|.+. ...+++++.-+.|++||....+.-+.+ +.+. + .+++++..-|
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~--fd~~--E------------~~is~~~l~p- 257 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ--FDFL--E------------NPISSTGLTP- 257 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE--eccc--c------------CcceeeeecC-
Confidence 124778889888 789999999999999887754444432 3332 2 6689998877
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEE-e-CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE
Q 001279 188 SSGNRVLIAYENALVILWDVSEAQIIFV-G-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1108)
Q Consensus 188 ~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1108)
.++.+++|...|.+..||+++++..-. + +. .+.|+++..+ |.+.++
T Consensus 258 -~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~------------------------------tGsirsih~h-p~~~~l 305 (412)
T KOG3881|consen 258 -SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI------------------------------TGSIRSIHCH-PTHPVL 305 (412)
T ss_pred -CCcEEEEecccchhheecccCceeeccccCCc------------------------------cCCcceEEEc-CCCceE
Confidence 688899999999999999999987543 2 22 6778888866 888999
Q ss_pred EEEEccCcEEEEecCCC
Q 001279 266 AVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 266 ~sg~~DG~I~lWd~~~~ 282 (1108)
++++-|..|+++|+.+.
T Consensus 306 as~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 306 ASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EeeccceeEEEeecccc
Confidence 99999999999999874
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.5e-06 Score=93.69 Aligned_cols=104 Identities=13% Similarity=0.255 Sum_probs=82.1
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC-----------CcEEEEEcCC
Q 001279 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND-----------NEIQVWSLES 107 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-----------~~I~vWd~~s 107 (1108)
+-+.|||-|.||++=-.-| |.+|+...-..+-...|++ |..+.|||+..||++-+.. ..|+|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 3478999999999987766 8999998777776777764 9999999999999998742 4599999999
Q ss_pred CeeeeeecC---C-CCeeEEEEecCCCEEEEEeCCCcEEEEE
Q 001279 108 RSLACCLKW---E-SNITAFSVISGSHFMYIGDENGLMSVIK 145 (1108)
Q Consensus 108 ~~~~~~~~~---~-~~Itsl~~~~~~~~l~vg~~dg~V~vw~ 145 (1108)
|.+..++.. + ..-.-+.|+.+.+|+|.-..++ |.|+.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyE 332 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYE 332 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEe
Confidence 988877743 1 1233578999999999776654 56655
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.71 E-value=3.4e-05 Score=89.74 Aligned_cols=213 Identities=10% Similarity=0.125 Sum_probs=122.3
Q ss_pred ceeeeeeCCCCCce------EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCc
Q 001279 26 LRIAVHYGIPATAS------ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1108)
Q Consensus 26 ~~~~~~~G~~~~is------~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~ 99 (1108)
+++..++-+...+. ..++ .+..+.+++.+|.|..+|..+.+.+....-...+.. ....++..++.++.++.
T Consensus 40 ~~~~W~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~~~~v~v~~~~g~ 116 (377)
T TIGR03300 40 VDQVWSASVGDGVGHYYLRLQPAV--AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGADGGLVFVGTEKGE 116 (377)
T ss_pred ceeeeEEEcCCCcCccccccceEE--ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEcCCEEEEEcCCCE
Confidence 45565655544431 2223 367888999999999999866555533222222211 11224678888888999
Q ss_pred EEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 100 IQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 100 I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
|..||..+++.+......+.+.+.-.. .+..+++++.+|.++.|+.. +++.. ++..... +.
T Consensus 117 l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~--tG~~~---W~~~~~~-------------~~ 177 (377)
T TIGR03300 117 VIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAA--TGERL---WTYSRVT-------------PA 177 (377)
T ss_pred EEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcC--CCcee---eEEccCC-------------Cc
Confidence 999999999998877665554432222 35678888889977666654 45554 2222111 00
Q ss_pred EEEe--cccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCcee-EEE
Q 001279 180 VGVL--PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS-ALC 256 (1108)
Q Consensus 180 ~~v~--f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt-sl~ 256 (1108)
..+. -+|...+..++.+..+|.+..+|..+++.++.... ..+..... . .....+. +..
T Consensus 178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~-------------~~~~g~~~--~----~~~~~~~~~p~ 238 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRV-------------ALPKGRTE--L----ERLVDVDGDPV 238 (377)
T ss_pred eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecc-------------ccCCCCCc--h----hhhhccCCccE
Confidence 0000 11111223578888899999999999987664321 00000000 0 0000010 111
Q ss_pred eecCCCCEEEEEEccCcEEEEecCCC
Q 001279 257 WASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
. .+..+++++.+|.+..||..++
T Consensus 239 -~--~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 239 -V--DGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred -E--ECCEEEEEEcCCEEEEEECCCC
Confidence 1 2557888888999999998765
No 259
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.70 E-value=2.9e-05 Score=90.24 Aligned_cols=108 Identities=14% Similarity=0.258 Sum_probs=73.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1108)
+.+++.++.++.|..+|..+++.+........+.+ ....++..+++++.+|.++.++ ..+|++.-. +.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~~~~v~v~~~~g~l~ald--~~tG~~~W~-~~~~------ 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGADGGLVFVGTEKGEVIALD--AEDGKELWR-AKLS------ 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEcCCEEEEEcCCCEEEEEE--CCCCcEeee-eccC------
Confidence 56888898999999999999999988766554432 1223577889999999765555 445666521 1111
Q ss_pred ccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeC
Q 001279 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~ 217 (1108)
+.+. ..|.-.+.+++++..+|.|..||.++++.++...
T Consensus 135 ---------~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 135 ---------SEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred ---------ceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 1111 1222234458888899999999999998877653
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.69 E-value=4.1e-05 Score=87.56 Aligned_cols=212 Identities=16% Similarity=0.153 Sum_probs=136.0
Q ss_pred eCCCCCceEEEEcCCCCEEEEEEC----CCcEEEEecCCc--c--eEEeCC-CCCCEEEEEEeeCCCEEEEEeC-CCcEE
Q 001279 32 YGIPATASILAFDHIQRLLAIATL----DGRIKVIGGDGI--E--GLLISP-SQLPYKNLEFLQNQGFLISITN-DNEIQ 101 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~----dG~I~iw~~~~~--~--~~~~~~-h~~~V~~l~fs~d~~~L~S~s~-d~~I~ 101 (1108)
......++-|+++|++++|.+... +|.|..|.++.. . .+.... ....-..+++++++.+|+++.. ++.|.
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence 335566778999999999999887 479999988543 2 222222 3345678999999999999985 89999
Q ss_pred EEEcCC-Ceeeee---ec-----------CCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeee-ceeecccc
Q 001279 102 VWSLES-RSLACC---LK-----------WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQL-PYNISADA 164 (1108)
Q Consensus 102 vWd~~s-~~~~~~---~~-----------~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~-~~~i~~~~ 164 (1108)
++++.. +.+... .. ......++.++|+++++++.+. ...|++++++...+.+... ...++.
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-- 190 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-- 190 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--
Confidence 999987 433322 21 1246889999999999998764 4567777777665555431 111221
Q ss_pred cccccCCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEcc--CCeEEEEeCCCcccccccccCCCCCCCCCcccC
Q 001279 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1108)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1108)
......+.|+| +++++++.. .++.|.+|++. .+......... ..+....+
T Consensus 191 -----------G~GPRh~~f~p--dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~------------~~~~~~~~-- 243 (345)
T PF10282_consen 191 -----------GSGPRHLAFSP--DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS------------TLPEGFTG-- 243 (345)
T ss_dssp -----------TSSEEEEEE-T--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE------------SCETTSCS--
T ss_pred -----------CCCCcEEEEcC--CcCEEEEecCCCCcEEEEeecccCCceeEEEEee------------eccccccc--
Confidence 15689999999 677776655 46789999988 45433221110 00000000
Q ss_pred cCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcEEEEecC
Q 001279 242 ISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTS 280 (1108)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I~lWd~~ 280 (1108)
......++ .+|||++|++.. .+++|.+|++.
T Consensus 244 -------~~~~~~i~-ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 244 -------ENAPAEIA-ISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp -------SSSEEEEE-E-TTSSEEEEEECTTTEEEEEEEC
T ss_pred -------cCCceeEE-EecCCCEEEEEeccCCEEEEEEEe
Confidence 22455566 469999988766 46679999984
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.68 E-value=7.6e-07 Score=93.60 Aligned_cols=116 Identities=20% Similarity=0.230 Sum_probs=80.8
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEE-cCCCeeeeeec--CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS-LESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd-~~s~~~~~~~~--~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
...+|...|......|...-+++++.|.+++||- .+++++-.+.. -+.+++++++.+....|++|-.+|++.-..+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 3446667777777777656699999999999995 66777766653 45789999999999999999999988766654
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCe
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~ 201 (1108)
.+=.++.. +-....| ...|..+.|+- ..+.+++.+.|..
T Consensus 99 edfnkm~~-~r~~~~h------------~~~v~~~if~~--~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 99 EDFNKMTF-LKDYLAH------------QARVSAIVFSL--THEWVLSTGKDKQ 137 (404)
T ss_pred hhhhhcch-hhhhhhh------------hcceeeEEecC--CceeEEEeccccc
Confidence 33222221 0112222 26788888843 4555777776665
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=1.7e-06 Score=102.28 Aligned_cols=176 Identities=12% Similarity=0.088 Sum_probs=115.5
Q ss_pred cEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC---CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEE
Q 001279 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1108)
Q Consensus 58 ~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~v 134 (1108)
+|.++|.++.....+..+..++....|+|||.+|+.++.+ ..|.+||+.+++........+...+.+|+|++++|+.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 6777788777666666677899999999999999887653 2599999988875444344455568899999997764
Q ss_pred -EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-CC--eEEEEEccCC
Q 001279 135 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 210 (1108)
Q Consensus 135 -g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg--~V~lWdl~~~ 210 (1108)
.+.+|...||.++...+.+.+ +..+. .......|+| +++.++..+. ++ .|.++|+.++
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~~~----lt~~~------------~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKALTR----ITRHR------------AIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred EEeCCCCeEEEEEECCCCCeEE----CccCC------------CCccceEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 567787667777665555543 22221 3356678988 6776766554 34 4666677777
Q ss_pred eEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc-cCc--EEEEecCCC
Q 001279 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGD--ILLWNTSTT 282 (1108)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~-DG~--I~lWd~~~~ 282 (1108)
+...+... .....+.+| +|||++|+..+. ++. |.++|+.++
T Consensus 341 ~~~~Lt~~------------------------------g~~~~~~~~-SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 341 KVSRLTFE------------------------------GEQNLGGSI-TPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CEEEEecC------------------------------CCCCcCeeE-CCCCCEEEEEEecCCceEEEEEECCCC
Confidence 65443211 111234566 599998877655 444 444555443
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=6.8e-07 Score=100.73 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=114.0
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeeEeeecccccee------------------------------------------
Q 001279 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGI------------------------------------------ 530 (1108)
Q Consensus 493 ~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~------------------------------------------ 530 (1108)
+...++|....||.+||||...+.++.-|.-.....+.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 34457888899999999999887765433321111000
Q ss_pred --------------eccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEE
Q 001279 531 --------------EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCR 596 (1108)
Q Consensus 531 --------------~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 596 (1108)
.-..|.+.|.++.++.+-..|-+++.|+.|..|++... +.+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-------------------------~~~ 137 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-------------------------VII 137 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-------------------------eee
Confidence 01356667777776666677777777777777776654 234
Q ss_pred EEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCC
Q 001279 597 AVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREV 676 (1108)
Q Consensus 597 ~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~ 676 (1108)
..+..-+..+.+++++|||+.|++|+. .|++||+++++++ ..+.||.++|.++.|......
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv---~~ftgh~s~v~t~~f~~~~~g-------------- 198 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLTASR--QIKVLDIETKEVV---ITFTGHGSPVRTLSFTTLIDG-------------- 198 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEeccc--eEEEEEccCceEE---EEecCCCcceEEEEEEEeccc--------------
Confidence 556777888999999999999999875 7999999999998 578899999999999965221
Q ss_pred CCCCCccEEEEEcCCccEEEEeCC
Q 001279 677 PVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 677 ~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
.-+..+|-+...+.-+.+|-.+
T Consensus 199 --~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 199 --IIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred --cccceeeeccccccceeEEEEE
Confidence 1124556666666666666543
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.61 E-value=2.4e-07 Score=99.65 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=112.7
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEecCCcc----eEE---eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001279 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIE----GLL---ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~----~~~---~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
....++|.+++||++..+.+..++++.... ... .......++.+.++.........++...+.+|.+..+...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 345678999999999999998888874332 221 2222334444444443333333445667888888888888
Q ss_pred eeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 112 CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 112 ~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
-.++|-+.++.++|+|+.+++++++.|..|+|-.|.. . +.+.. +..+|..-|..++..+ +.
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa---~-----f~Ies--------fclGH~eFVS~isl~~---~~ 206 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA---T-----FVIES--------FCLGHKEFVSTISLTD---NY 206 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc---c-----cchhh--------hccccHhheeeeeecc---Cc
Confidence 8889999999999999999999999999999988764 2 11221 1122236788888855 33
Q ss_pred EEEEEECCCeEEEEEccCCeEEEE
Q 001279 192 RVLIAYENALVILWDVSEAQIIFV 215 (1108)
Q Consensus 192 ~ll~~~~dg~V~lWdl~~~~~~~~ 215 (1108)
.|++++.|++|++||+.+++.+..
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred eeeecCCCCcEEEEecccCCcccc
Confidence 489999999999999999987643
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.57 E-value=7e-07 Score=93.70 Aligned_cols=220 Identities=17% Similarity=0.221 Sum_probs=138.1
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcc---eE---EeCCCC------------CCEEEEEEeeCC--CEEEEEeC
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GL---LISPSQ------------LPYKNLEFLQNQ--GFLISITN 96 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~---~~---~~~~h~------------~~V~~l~fs~d~--~~L~S~s~ 96 (1108)
-|+++.|+..|.+||||..+|+|-+|..+... .. ....|+ ..|..+.|.+++ ..++..+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 48999999999999999999999999874332 11 222333 257888898764 35566667
Q ss_pred CCcEEEEEcCCCeeee---------------e----------------------ecCCCCeeEEEEecCCCEEEEEeCCC
Q 001279 97 DNEIQVWSLESRSLAC---------------C----------------------LKWESNITAFSVISGSHFMYIGDENG 139 (1108)
Q Consensus 97 d~~I~vWd~~s~~~~~---------------~----------------------~~~~~~Itsl~~~~~~~~l~vg~~dg 139 (1108)
|.+|++|.+..+.... + -.|+-.|.+++++.+...+++++ |=
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ce
Confidence 9999999986542111 0 02344689999999998877765 55
Q ss_pred cEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCC
Q 001279 140 LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGK 219 (1108)
Q Consensus 140 ~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~ 219 (1108)
.|.+|+++..++..-- ..+..+...+. ..-|++-.|||. ..+.++-.++.|+|+|-|++...+-- .|+
T Consensus 186 RINLWnlei~d~sFnI--VDIKP~nmEeL-------teVITsaEFhp~-~cn~f~YSSSKGtIrLcDmR~~aLCd--~hs 253 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNI--VDIKPANMEEL-------TEVITSAEFHPH-HCNVFVYSSSKGTIRLCDMRQSALCD--AHS 253 (433)
T ss_pred eeeeccccccCCceeE--EEccccCHHHH-------HHHHhhhccCHh-HccEEEEecCCCcEEEeechhhhhhc--chh
Confidence 5889999865444321 11221111111 145889999997 45568888999999999998643210 010
Q ss_pred cccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.+.-. +.. +...+...+. -..|..+-| +++|++|++-.. -+|++||+...
T Consensus 254 KlfEe---ped-p~~rsffsei-------IsSISDvKF-s~sGryilsRDy-ltvk~wD~nme 303 (433)
T KOG1354|consen 254 KLFEE---PED-PSSRSFFSEI-------ISSISDVKF-SHSGRYILSRDY-LTVKLWDLNME 303 (433)
T ss_pred hhhcc---ccC-CcchhhHHHH-------hhhhhceEE-ccCCcEEEEecc-ceeEEEecccc
Confidence 00000 000 0001111111 335666775 599999887543 58999999654
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.55 E-value=0.00041 Score=77.61 Aligned_cols=106 Identities=10% Similarity=-0.006 Sum_probs=70.1
Q ss_pred CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC----------CCcEEEEEEecCCCeeeeeceeeccccccc
Q 001279 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1108)
Q Consensus 98 ~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~----------dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1108)
+.|.|.|..+++++..+.-...-..+ ++|++++++++.. +..|.|||..+ .+.... ..++... +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~-i~~p~~p--~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIAD-IELPEGP--R 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeE-EccCCCc--h
Confidence 88999999999999888544333344 9999999998876 67788888664 333321 1122110 0
Q ss_pred ccCCCCCCCCCeEEEecccCCCCCEEEEEE-C-CCeEEEEEccCCeEEEEe
Q 001279 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-E-NALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~-dg~V~lWdl~~~~~~~~~ 216 (1108)
. ........++++| +|++|++.. . +..|.+.|+.+++++...
T Consensus 101 ~-----~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 101 F-----LVGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred h-----hccCccceEEECC--CCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 0 0012344667777 788777665 3 678999999998876543
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.54 E-value=8.7e-07 Score=95.47 Aligned_cols=161 Identities=11% Similarity=0.060 Sum_probs=116.4
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCc--eeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecC
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPV--FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~--l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
..++.++++|.+..+....++++.... .+++-. ..-...-+++.|..+.....++..-|.+.-++.-.
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~----------~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV----------SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE----------eecccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 578889999999887776676655433 121111 11112346677777777777777666666665544
Q ss_pred CCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCC
Q 001279 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 647 (1108)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h 647 (1108)
-.. .+.....+|-..+++|+|+||++++++++.|..|||-.+....++. .-..||
T Consensus 139 ~~~-----------------------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie--sfclGH 193 (390)
T KOG3914|consen 139 ADS-----------------------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE--SFCLGH 193 (390)
T ss_pred ccc-----------------------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh--hhcccc
Confidence 210 0112335899999999999999999999999999999998877762 233589
Q ss_pred CCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 648 ~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
..-|..++..+ +..|++++.|++|++||..+|+.+..+
T Consensus 194 ~eFVS~isl~~-----------------------~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 194 KEFVSTISLTD-----------------------NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred Hhheeeeeecc-----------------------CceeeecCCCCcEEEEecccCCccccc
Confidence 99999998872 455899999999999999999988655
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.52 E-value=0.00027 Score=77.68 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=115.4
Q ss_pred CCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC-cEEEEEcCCCeeeeeecCCCCeeEEE
Q 001279 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN-EIQVWSLESRSLACCLKWESNITAFS 124 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~-~I~vWd~~s~~~~~~~~~~~~Itsl~ 124 (1108)
+|.++|.-+. |+..|.+....- ....+|.+.|+...+..+..-++.+..|+ .|.|+|..+++.-.....-+.|.++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~-~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~ 408 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGY-SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVK 408 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCe-eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEE
Confidence 6788888875 667776553332 24556778899999988877899999888 79999999998877777778999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC----
Q 001279 125 VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---- 200 (1108)
Q Consensus 125 ~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg---- 200 (1108)
+++++++++++.....+.+.+++ +++... +.-. ..+-|+...||| ++..++-++.+|
T Consensus 409 vs~dGK~~vvaNdr~el~vidid--ngnv~~----idkS-----------~~~lItdf~~~~--nsr~iAYafP~gy~tq 469 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDID--NGNVRL----IDKS-----------EYGLITDFDWHP--NSRWIAYAFPEGYYTQ 469 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEec--CCCeeE----eccc-----------ccceeEEEEEcC--CceeEEEecCcceeee
Confidence 99999999999888866554444 455442 2211 126799999999 677788888887
Q ss_pred eEEEEEccCCeEEEEe
Q 001279 201 LVILWDVSEAQIIFVG 216 (1108)
Q Consensus 201 ~V~lWdl~~~~~~~~~ 216 (1108)
.|+++|+.++++....
T Consensus 470 ~Iklydm~~~Kiy~vT 485 (668)
T COG4946 470 SIKLYDMDGGKIYDVT 485 (668)
T ss_pred eEEEEecCCCeEEEec
Confidence 6899999999886553
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.51 E-value=2.1e-07 Score=115.49 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=124.6
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCC
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~ 569 (1108)
.-+|...+|+||++||.|++|....+... +.. ...+. +.|+.+.|+.+|+-+.++..||.+.+|..+..
T Consensus 2215 ~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--~~~-------rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk- 2283 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFEWGHGQQV--VCF-------RTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK- 2283 (2439)
T ss_pred cCCCCCceEEecCCCceEEEEeccCCCeE--EEe-------eccCc-chhhhhhhcccCCceeeeccCCceeecccCCc-
Confidence 55778889999999999999998876632 222 22344 78999999999999999999999999998854
Q ss_pred CCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEE---eCCCeEEEEEccCceEEEEeecCCC
Q 001279 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG---FECGRVAVLDMNLLSVLFFTDDISG 646 (1108)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavG---s~dG~V~vwd~~~~~~~~~~~~~~~ 646 (1108)
++..++.|+...+...|-. .++++. ++++++.+||..-+.....++ ..
T Consensus 2284 -------------------------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~ 2334 (2439)
T KOG1064|consen 2284 -------------------------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC 2334 (2439)
T ss_pred -------------------------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--ee
Confidence 4567788999999999986 346654 478999999986544333333 45
Q ss_pred CCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
|.++++.++|. |.-.+|++|+++|.||+||....+++...
T Consensus 2335 H~~gaT~l~~~----------------------P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2335 HDGGATVLAYA----------------------PKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred cCCCceEEEEc----------------------CcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 99999999999 45788999999999999998766665443
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.50 E-value=0.0039 Score=68.84 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=112.2
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCc-eEEEEEecCCCCCc
Q 001279 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG-LVYIYNLNGSLDAK 572 (1108)
Q Consensus 494 ~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG-~V~lw~l~~~~~~~ 572 (1108)
+|.+++.-+. |...|.+...+... --+|...|.-..+..++.-++.|..|| .+-||+..+.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~i-------------qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---- 392 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSI-------------QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---- 392 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeE-------------EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----
Confidence 4556776664 55555554433311 126667799899999999999999999 8999998886
Q ss_pred cccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceE
Q 001279 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 652 (1108)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~ 652 (1108)
.+..+...-+.|-+|..+|+|++++++.+...++++|+.++.+..-.+. --+-|+
T Consensus 393 ----------------------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS---~~~lIt 447 (668)
T COG4946 393 ----------------------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS---EYGLIT 447 (668)
T ss_pred ----------------------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc---ccceeE
Confidence 2345567778999999999999999999999999999999987643322 456688
Q ss_pred EEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCc----cEEEEeCCCcceec
Q 001279 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDA----KISIVGGSSENMIS 706 (1108)
Q Consensus 653 ~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg----~v~v~d~~~g~~l~ 706 (1108)
...|+ |+..+++-+--+| +|.++|.++|+...
T Consensus 448 df~~~----------------------~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 448 DFDWH----------------------PNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEEEc----------------------CCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 88888 4466777777664 68899999888764
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.50 E-value=4.8e-07 Score=112.49 Aligned_cols=192 Identities=9% Similarity=0.127 Sum_probs=142.2
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCC-cce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDG-IEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~-~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
.+.++.-+|...+-.+|+.||.|++|.-.. ..+ ......+..|+.+.|+.+|+....+..||.|.+|-+..+-++.-.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~q 2289 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQ 2289 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccc
Confidence 466777789899999999999999987632 233 344455589999999999999999999999999999855444444
Q ss_pred cCCCCeeEEEEecCCCEEEEEe---CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 115 KWESNITAFSVISGSHFMYIGD---ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~---~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
-|....+.|.|.. ..+++++ .++++.+||--.....-. --..|. +.++++++-| ...
T Consensus 2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~----v~~~H~------------~gaT~l~~~P--~~q 2349 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL----VHTCHD------------GGATVLAYAP--KHQ 2349 (2439)
T ss_pred cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce----eeeecC------------CCceEEEEcC--cce
Confidence 5777778888876 4555543 478899998543221111 013333 8899999998 567
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc
Q 001279 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1108)
Q Consensus 192 ~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D 271 (1108)
.|++|+.+|.|.|||++..+...++.. |. ...++++|+..
T Consensus 2350 llisggr~G~v~l~D~rqrql~h~~~~--------------------------------------~~--~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLRHTFQA--------------------------------------LD--TREYFVTGSSE 2389 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHHHHHhhh--------------------------------------hh--hhheeeccCcc
Confidence 799999999999999998776654421 12 45689999999
Q ss_pred CcEEEEecCCCCCCCCc
Q 001279 272 GDILLWNTSTTASTKGQ 288 (1108)
Q Consensus 272 G~I~lWd~~~~~~~~~~ 288 (1108)
|.|++|++.........
T Consensus 2390 g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred cceEEEEccccchhhcC
Confidence 99999999876544443
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.49 E-value=7.6e-06 Score=86.15 Aligned_cols=118 Identities=11% Similarity=0.154 Sum_probs=76.5
Q ss_pred cEEEEEecCCcEEEEeCCCCcee----eEeeecccccee-eccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCC
Q 001279 496 RVYLAGYHDGSVRIWDATYPVFK----LICALDAEVQGI-EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1108)
Q Consensus 496 ~llatgs~DGtVriWd~~~~~l~----~~~~l~~~~~~~-~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~ 570 (1108)
++++-.+..|+||+-|+....+- .++......... -+.+--.+|..+.|+++|+|+++-+ .-+|+|||+.....
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~ 305 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAK 305 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCC
Confidence 36777788999999998844321 111111110000 1223335789999999999999654 46999999976533
Q ss_pred CccccccccCccceeecccCCcceEEEEEeec------------CcCE---EEEEEcCCCCEEEEEeCCCeEEEEEccCc
Q 001279 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLV------------NSPV---RALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h------------~~~V---tslafspdg~~LavGs~dG~V~vwd~~~~ 635 (1108)
. +.++..| +..| .-++|+.++.++.+|+-...+++++...+
T Consensus 306 p------------------------v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 306 P------------------------VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred c------------------------ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 2 1222222 1222 34789999999999999999999997766
Q ss_pred eEE
Q 001279 636 SVL 638 (1108)
Q Consensus 636 ~~~ 638 (1108)
...
T Consensus 362 sk~ 364 (433)
T KOG1354|consen 362 SKE 364 (433)
T ss_pred cce
Confidence 543
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=0.00029 Score=75.79 Aligned_cols=262 Identities=14% Similarity=0.160 Sum_probs=158.9
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECC---CcEEEEecCCc--ceEE--eCCC-CCCEEEEEEeeCCCEEEEEeC-CCcEE
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGI--EGLL--ISPS-QLPYKNLEFLQNQGFLISITN-DNEIQ 101 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~d---G~I~iw~~~~~--~~~~--~~~h-~~~V~~l~fs~d~~~L~S~s~-d~~I~ 101 (1108)
.....+.++=|+++|+++.|.++-.+ |.|.-|.++.. ...+ ...- ..+-..+++++++++|+++.. .+.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 34556778889999999988887655 88888877643 2221 1111 123389999999999999985 68899
Q ss_pred EEEcCC-Cee---eeeecCCCC----------eeEEEEecCCCEEEEEeCC-CcEEEEEEecCCCeeeee-ceeeccccc
Q 001279 102 VWSLES-RSL---ACCLKWESN----------ITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQL-PYNISADAL 165 (1108)
Q Consensus 102 vWd~~s-~~~---~~~~~~~~~----------Itsl~~~~~~~~l~vg~~d-g~V~vw~~d~~~~~l~~~-~~~i~~~~~ 165 (1108)
|+-++. |.+ +....|.+. +.+..+.|++++|++.+-. -.|.+++++ +|.+... ++.+
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~--dg~L~~~~~~~v----- 187 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD--DGKLTPADPAEV----- 187 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc--cCcccccccccc-----
Confidence 999966 433 233345444 8899999999999888642 335566655 5666531 1111
Q ss_pred ccccCCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEccC--CeEEEEeCCCcccccccccCCCCCCCCCcccCc
Q 001279 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSE--AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1108)
Q Consensus 166 ~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1108)
........|.||| +++...+.. -+++|.+|.... ++...+..+. ..+-...|
T Consensus 188 --------~~G~GPRHi~FHp--n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~------------tlP~dF~g--- 242 (346)
T COG2706 188 --------KPGAGPRHIVFHP--NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID------------TLPEDFTG--- 242 (346)
T ss_pred --------CCCCCcceEEEcC--CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec------------cCccccCC---
Confidence 1125689999999 677655544 589999999887 4443332220 11111111
Q ss_pred CCCCCCCCceeEEEeecCCCCEEEEEEc-cCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeeccccc
Q 001279 243 SEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKES 321 (1108)
Q Consensus 243 ~~~~~~~~~Vtsl~w~spdg~~l~sg~~-DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~ 321 (1108)
......+. .++||++|+++-. ...|.++.+.... ....+........ ......
T Consensus 243 ------~~~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~~~-----------g~L~~~~~~~teg--------~~PR~F 296 (346)
T COG2706 243 ------TNWAAAIH-ISPDGRFLYASNRGHDSIAVFSVDPDG-----------GKLELVGITPTEG--------QFPRDF 296 (346)
T ss_pred ------CCceeEEE-ECCCCCEEEEecCCCCeEEEEEEcCCC-----------CEEEEEEEeccCC--------cCCccc
Confidence 33344455 5699999988743 2367777765331 1111110000000 001112
Q ss_pred ccCCCceEEEEeCCCCCCcceEEEEecccccc
Q 001279 322 RSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1108)
Q Consensus 322 ~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~ 353 (1108)
...+.+++|+..+++. +.+++...+..++
T Consensus 297 ~i~~~g~~Liaa~q~s---d~i~vf~~d~~TG 325 (346)
T COG2706 297 NINPSGRFLIAANQKS---DNITVFERDKETG 325 (346)
T ss_pred eeCCCCCEEEEEccCC---CcEEEEEEcCCCc
Confidence 3567788888887764 4577777665554
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=9.8e-06 Score=91.64 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=133.9
Q ss_pred cCCCCEEEEEECCCcEEEEecCCcceEEeC----CCCCCEEEEEEe--------------------eCCCEEEEEeCCCc
Q 001279 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLIS----PSQLPYKNLEFL--------------------QNQGFLISITNDNE 99 (1108)
Q Consensus 44 sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~----~h~~~V~~l~fs--------------------~d~~~L~S~s~d~~ 99 (1108)
+|-+.++|..+.||++|||+........+. .-.+..+++.|. .|...++-+...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 466789999999999999998654443222 123334444442 12345777778999
Q ss_pred EEEEEcCCCeeeeee---cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001279 100 IQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1108)
Q Consensus 100 I~vWd~~s~~~~~~~---~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1108)
|.++++..+++...+ .|.+.|+++.++.+-..+++++.|+.+-.|+... +.+... .....
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~~~---~~~~~------------ 144 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE--KVIIRI---WKEQK------------ 144 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc--ceeeee---eccCC------------
Confidence 999999999998777 5889999999999999999999999988888754 233321 22211
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEE
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1108)
..+.+++.+| ++..+++|+ +.|++||+++++++.. .|| .++|.++
T Consensus 145 ~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh------------------------------~s~v~t~ 190 (541)
T KOG4547|consen 145 PLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGH------------------------------GSPVRTL 190 (541)
T ss_pred CccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCC------------------------------CcceEEE
Confidence 4588899988 688777765 6789999999988665 456 7788888
Q ss_pred EeecCC-----CCEEEEEE-ccCcEEEEecCC
Q 001279 256 CWASSS-----GSILAVGY-IDGDILLWNTST 281 (1108)
Q Consensus 256 ~w~spd-----g~~l~sg~-~DG~I~lWd~~~ 281 (1108)
.|. .+ |.+++++. .+..+.+|-...
T Consensus 191 ~f~-~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 191 SFT-TLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEE-EeccccccceeeeccccccceeEEEEEc
Confidence 875 44 66666554 344577776653
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.46 E-value=0.00033 Score=90.78 Aligned_cols=230 Identities=13% Similarity=0.103 Sum_probs=123.3
Q ss_pred eeeeeCCCCCceEEEEcCCCCEEEEEECCCc-----------EEEEecCC----cceE--Ee---------CCCCCCEEE
Q 001279 28 IAVHYGIPATASILAFDHIQRLLAIATLDGR-----------IKVIGGDG----IEGL--LI---------SPSQLPYKN 81 (1108)
Q Consensus 28 ~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~-----------I~iw~~~~----~~~~--~~---------~~h~~~V~~ 81 (1108)
....||+.+-.+.+-++++|++++.-..... +..|.... .... +. .+-..| ..
T Consensus 494 ~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~P-~g 572 (1057)
T PLN02919 494 LWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYYGEKKLLDSTPLPLSLEKDNDPRLLTSPLKFP-GK 572 (1057)
T ss_pred HHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhhccccccccCCCcccccccCCcccccccCCCC-ce
Confidence 3456888888999999999998865321110 11111100 0000 00 001112 45
Q ss_pred EEEeeCCC-EEEEEeCCCcEEEEEcCCCeeeeeecC---------------CCCeeEEEEecCCCEEEEEeCC-CcEEEE
Q 001279 82 LEFLQNQG-FLISITNDNEIQVWSLESRSLACCLKW---------------ESNITAFSVISGSHFMYIGDEN-GLMSVI 144 (1108)
Q Consensus 82 l~fs~d~~-~L~S~s~d~~I~vWd~~s~~~~~~~~~---------------~~~Itsl~~~~~~~~l~vg~~d-g~V~vw 144 (1108)
++++++++ ..++-+..+.|.+||..... +..... -.....++++++++.|++++.. +.|+++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 78887544 45555567889999987553 322211 1235789999999988888764 556666
Q ss_pred EEecCCCeeeeeceeecccccccc-c--CCC--CCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCC
Q 001279 145 KYDADEGKLFQLPYNISADALSEK-A--GFP--LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGK 219 (1108)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~-~--~~~--~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~ 219 (1108)
++.. +.+.. +.+...... . +.. .........|+++|. ++..+++.+.++.|++||..++.+..+.+..
T Consensus 652 d~~~--~~V~t----lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G 724 (1057)
T PLN02919 652 DFVN--ETVRT----LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRVFSGDG 724 (1057)
T ss_pred ecCC--CEEEE----EeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEEEecCC
Confidence 5543 33321 111100000 0 000 000134578999884 4554566677889999999888765443320
Q ss_pred cccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE-EEEEccCcEEEEecCCC
Q 001279 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL-AVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l-~sg~~DG~I~lWd~~~~ 282 (1108)
. .. ...+.. .....-...+.+++. |+|..| ++-+.++.|++||+.++
T Consensus 725 ~-~~------------~~~g~~--~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 725 Y-ER------------NLNGSS--GTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred c-cc------------cCCCCc--cccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCC
Confidence 0 00 000000 000012345678865 898855 45556789999998643
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=0.00012 Score=78.57 Aligned_cols=226 Identities=15% Similarity=0.223 Sum_probs=150.3
Q ss_pred CCCccccccce-----eeeeeCCCCCc-eEEEEcCCCCEEEEEECC-CcEEEEecCCc----ceEEeCCCCCC-------
Q 001279 17 GSLTAADLNLR-----IAVHYGIPATA-SILAFDHIQRLLAIATLD-GRIKVIGGDGI----EGLLISPSQLP------- 78 (1108)
Q Consensus 17 ~~l~~~~~~~~-----~~~~~G~~~~i-s~la~sp~~~~LA~Gs~d-G~I~iw~~~~~----~~~~~~~h~~~------- 78 (1108)
++..+-.+|++ +.++.-.++.. +-+++|+++++|+++... |.|.++.++.. ...-...|.++
T Consensus 64 ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~ 143 (346)
T COG2706 64 GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQE 143 (346)
T ss_pred CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcccc
Confidence 56667777763 45555555555 779999999999999876 89999988432 22233445555
Q ss_pred ---EEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCeeeeee----cCCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecC
Q 001279 79 ---YKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCL----KWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDAD 149 (1108)
Q Consensus 79 ---V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~~~~~~----~~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~ 149 (1108)
+.+..|.|++++|++++- ...|.++++..+.+.... ........+.|+|++++.++-++ +++|-+|.++..
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 899999999999999985 456999999988664332 33456789999999999998886 899999999986
Q ss_pred CCeeeeece--eecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC--eEEEEEccCC-eEEEEeCCCccccc
Q 001279 150 EGKLFQLPY--NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA--LVILWDVSEA-QIIFVGGGKDLQLK 224 (1108)
Q Consensus 150 ~~~l~~~~~--~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg--~V~lWdl~~~-~~~~~~~~~~~~~~ 224 (1108)
.+++..++. .+|.. -....+.-.|..+| +|. ++-++..| .|.+|.+... ..+.+.+....
T Consensus 224 ~g~~~~lQ~i~tlP~d---------F~g~~~~aaIhis~--dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t--- 288 (346)
T COG2706 224 VGKFEELQTIDTLPED---------FTGTNWAAAIHISP--DGR-FLYASNRGHDSIAVFSVDPDGGKLELVGITPT--- 288 (346)
T ss_pred CceEEEeeeeccCccc---------cCCCCceeEEEECC--CCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEEecc---
Confidence 666654311 12211 11225567777766 787 66666655 6777776653 22222222000
Q ss_pred ccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC-cEEEEecCC
Q 001279 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG-DILLWNTST 281 (1108)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG-~I~lWd~~~ 281 (1108)
.+..|+ ... +.+.|++|+++..++ .|.+|..+.
T Consensus 289 ------eg~~PR-----------------~F~-i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 289 ------EGQFPR-----------------DFN-INPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ------CCcCCc-----------------cce-eCCCCCEEEEEccCCCcEEEEEEcC
Confidence 011122 233 358899998887654 588887753
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.40 E-value=6.4e-05 Score=97.24 Aligned_cols=227 Identities=14% Similarity=0.106 Sum_probs=138.3
Q ss_pred CceEEEEcCCCCEEEEEEC-CCcEEEEecCCcceEEeCCC-----------------CCCEEEEEEee-CCCEEEEEeCC
Q 001279 37 TASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPS-----------------QLPYKNLEFLQ-NQGFLISITND 97 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~-dG~I~iw~~~~~~~~~~~~h-----------------~~~V~~l~fs~-d~~~L~S~s~d 97 (1108)
.+..+++++++..|.++.. +++|+++|..+..+..+.+- -..-..++|+| ++...++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 3577899999887767654 57899999876555433210 00125789999 45555666778
Q ss_pred CcEEEEEcCCCeeeeeec---------------CCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeec
Q 001279 98 NEIQVWSLESRSLACCLK---------------WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNIS 161 (1108)
Q Consensus 98 ~~I~vWd~~s~~~~~~~~---------------~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~ 161 (1108)
+.|.+||..++....... .-...+.++++|++++|++++. ++.|++|+++.....+........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 999999998875532111 0124567999999997777764 688888887643211110000000
Q ss_pred ccccccccCC-----CCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCC
Q 001279 162 ADALSEKAGF-----PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1108)
Q Consensus 162 ~~~~~~~~~~-----~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1108)
.... ..++. .........++++.| +|..+++-+.++.|++||..++.+..+.+. +....
T Consensus 785 ~~~l-~~fG~~dG~g~~~~l~~P~Gvavd~--dG~LYVADs~N~rIrviD~~tg~v~tiaG~-------------G~~G~ 848 (1057)
T PLN02919 785 SDNL-FKFGDHDGVGSEVLLQHPLGVLCAK--DGQIYVADSYNHKIKKLDPATKRVTTLAGT-------------GKAGF 848 (1057)
T ss_pred Cccc-ccccCCCCchhhhhccCCceeeEeC--CCcEEEEECCCCEEEEEECCCCeEEEEecc-------------CCcCC
Confidence 0000 00000 000113456888876 677677778889999999999887765543 10000
Q ss_pred CcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
..|.. ....-.....+++ +++|+.+++-+.++.|++||+.++.
T Consensus 849 ~dG~~---~~a~l~~P~GIav-d~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 849 KDGKA---LKAQLSEPAGLAL-GENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCcc---cccccCCceEEEE-eCCCCEEEEECCCCEEEEEECCCCc
Confidence 00100 0111345677886 4999988888899999999998763
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.39 E-value=9.3e-05 Score=82.71 Aligned_cols=202 Identities=13% Similarity=0.086 Sum_probs=129.6
Q ss_pred EcCCCCEEEEEEC----------CCcEEEEecCCcceEEeCCCC--------CCEEEEEEeeCCCEEEEEe-C-CCcEEE
Q 001279 43 FDHIQRLLAIATL----------DGRIKVIGGDGIEGLLISPSQ--------LPYKNLEFLQNQGFLISIT-N-DNEIQV 102 (1108)
Q Consensus 43 ~sp~~~~LA~Gs~----------dG~I~iw~~~~~~~~~~~~h~--------~~V~~l~fs~d~~~L~S~s-~-d~~I~v 102 (1108)
++||++.|.++.. +..|.+||..+.+.+-..+-. ..-..++++|||++|+... + ++.|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999988876 799999999887776333321 1234788999999988776 3 789999
Q ss_pred EEcCCCeeeeeecCCC--------------------------------CeeEEEE--------------ec-CCCEEEEE
Q 001279 103 WSLESRSLACCLKWES--------------------------------NITAFSV--------------IS-GSHFMYIG 135 (1108)
Q Consensus 103 Wd~~s~~~~~~~~~~~--------------------------------~Itsl~~--------------~~-~~~~l~vg 135 (1108)
.|+.+++.+....-++ .+....+ .+ ++.++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9999998775542211 0111111 12 56666666
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE----------CCCeEEEE
Q 001279 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY----------ENALVILW 205 (1108)
Q Consensus 136 ~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~----------~dg~V~lW 205 (1108)
.+ |+|++.++....-... .++.+.... +. ...-.++.+.-++++| ++++++++. ..+.|.++
T Consensus 213 ~e-G~V~~id~~~~~~~~~-~~~~~~~~~--~~--~~~wrP~g~q~ia~~~--dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFL-PAIEAFTEA--EK--ADGWRPGGWQQVAYHR--ARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred cC-CeEEEEecCCCcceec-ceeeecccc--cc--ccccCCCcceeEEEcC--CCCEEEEEecCCccccccCCCCEEEEE
Confidence 66 7777777543221111 111111100 00 0001124444589988 778788743 22479999
Q ss_pred EccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEEEEE-ccCcEEEEecCCCC
Q 001279 206 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTSTTA 283 (1108)
Q Consensus 206 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~-~DG~I~lWd~~~~~ 283 (1108)
|..+++.+....- ...+..+++ +|||+ .|++.. .++.|.+.|..+.+
T Consensus 285 D~~t~kvi~~i~v------------------------------G~~~~~iav-S~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 285 DAKTGKRLRKIEL------------------------------GHEIDSINV-SQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ECCCCeEEEEEeC------------------------------CCceeeEEE-CCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9999988765432 446777884 69999 888766 68899999998764
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.35 E-value=7.1e-05 Score=78.05 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=76.3
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCC-------CCCEEEEEEeeCC------CEEEEEeCCCcEEEEEc
Q 001279 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS-------QLPYKNLEFLQNQ------GFLISITNDNEIQVWSL 105 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h-------~~~V~~l~fs~d~------~~L~S~s~d~~I~vWd~ 105 (1108)
.-++||||+.+||.+...|.|++||+-+.+...+.+. ..+|..|.|.+.. ..|+.....|.++-+-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 4699999999999999999999999998877765553 2478888887632 36888888888888876
Q ss_pred CCC-----eeeeeec----CCCCeeEEEEecCCCEEEEEeC
Q 001279 106 ESR-----SLACCLK----WESNITAFSVISGSHFMYIGDE 137 (1108)
Q Consensus 106 ~s~-----~~~~~~~----~~~~Itsl~~~~~~~~l~vg~~ 137 (1108)
..+ +..+++. ++..|+++.++|..++|++|+.
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 432 2233332 4578999999999999888864
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.27 E-value=6.5e-06 Score=83.63 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=100.3
Q ss_pred cccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEe-----cCceEEEE
Q 001279 489 TKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN-----EFGLVYIY 563 (1108)
Q Consensus 489 ~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~-----~dG~V~lw 563 (1108)
-+.+-.++-+++|+.||.+-+.+... .++ ++.++. ..| ..--+.+++..++++.++. .-+..+.|
T Consensus 95 ~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~----~~~~i~----~~~-~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~ 164 (319)
T KOG4714|consen 95 DACTMTDNRVCIGYADGSLAVFSTDK-DLA----LMSRIP----SIH-SGSASRKICRHGNSILSGGCGNWNAQDNFYAN 164 (319)
T ss_pred ccccccCCceEecCCCceEEEEechH-HHh----hhhhcc----ccc-ccccccceeecccEEecCCcceEeeccceeee
Confidence 35566677899999999999998775 322 111100 011 1112233444444444322 11233444
Q ss_pred EecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEEee
Q 001279 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTD 642 (1108)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafsp-dg~~LavGs~dG~V~vwd~~~~~~~~~~~ 642 (1108)
++...... .........|++++-+| ..+++++|++||.|-+||.+.... ...
T Consensus 165 ~~~p~~t~-------------------------~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--p~S 217 (319)
T KOG4714|consen 165 TLDPIKTL-------------------------IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--PVS 217 (319)
T ss_pred cccccccc-------------------------cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--hHH
Confidence 44433211 00011223399999998 457889999999999999998743 345
Q ss_pred cCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceec
Q 001279 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1108)
Q Consensus 643 ~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~ 706 (1108)
.+..|..+|..+.|.|.+. .-|+++++||++.-||.++ .+|+
T Consensus 218 ~l~ahk~~i~eV~FHpk~p---------------------~~Lft~sedGslw~wdas~-~~l~ 259 (319)
T KOG4714|consen 218 LLKAHKAEIWEVHFHPKNP---------------------EHLFTCSEDGSLWHWDAST-TFLS 259 (319)
T ss_pred HHHHhhhhhhheeccCCCc---------------------hheeEecCCCcEEEEcCCC-ceEE
Confidence 6778999999999997532 3499999999999999875 4443
No 281
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=1.6e-05 Score=92.68 Aligned_cols=189 Identities=14% Similarity=0.173 Sum_probs=133.5
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~ 115 (1108)
..++|++++ .+++|.|+.+|.|++++.++.. .....|... ..+|.+++|||.||.|.|-.+-+.+..+.+.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 457888887 7999999999999999998765 333344332 5578999999999999999999999999999
Q ss_pred CCCCeeEEEEecC-----CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 116 WESNITAFSVISG-----SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 116 ~~~~Itsl~~~~~-----~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
...++.+++++|+ .+++++|+..| +.+. +. .+.. ++.+. ......++|.++.| .|
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~--er---~wlg--nk~~v--------~l~~~eG~I~~i~W----~g 170 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS--ER---NWLG--NKDSV--------VLSEGEGPIHSIKW----RG 170 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEe--hh---hhhc--Cccce--------eeecCccceEEEEe----cC
Confidence 9999999999998 46889998888 4332 21 1110 11110 11223488999999 67
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001279 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1108)
Q Consensus 191 ~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1108)
++++-+..+|+ +|||..+++.+....... ..++. +.--..++|. +...|+.|-.
T Consensus 171 ~lIAWand~Gv-~vyd~~~~~~l~~i~~p~------------~~~R~-----------e~fpphl~W~--~~~~LVIGW~ 224 (846)
T KOG2066|consen 171 NLIAWANDDGV-KVYDTPTRQRLTNIPPPS------------QSVRP-----------ELFPPHLHWQ--DEDRLVIGWG 224 (846)
T ss_pred cEEEEecCCCc-EEEeccccceeeccCCCC------------CCCCc-----------ccCCCceEec--CCCeEEEecC
Confidence 76777777775 999999988776543210 00000 2234468886 4556777776
Q ss_pred cCcEEEEecC
Q 001279 271 DGDILLWNTS 280 (1108)
Q Consensus 271 DG~I~lWd~~ 280 (1108)
| +|++..+.
T Consensus 225 d-~v~i~~I~ 233 (846)
T KOG2066|consen 225 D-SVKICSIK 233 (846)
T ss_pred C-eEEEEEEe
Confidence 5 58888776
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00016 Score=84.32 Aligned_cols=158 Identities=8% Similarity=-0.001 Sum_probs=103.3
Q ss_pred CceEEEEcCCCCE-EEEEECC---CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-CC--CcEEEEEcCCCe
Q 001279 37 TASILAFDHIQRL-LAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-ND--NEIQVWSLESRS 109 (1108)
Q Consensus 37 ~is~la~sp~~~~-LA~Gs~d---G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d--~~I~vWd~~s~~ 109 (1108)
.+....|+||++. ++..+.+ ..|+++|+.+.+...+....+.+....|+|||.+|+-.. .+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 4567899999984 7654443 568889998777666555667777889999998776543 33 468888998887
Q ss_pred eeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 110 LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 110 ~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
.............-.|+|+++.|+..+ ..|.-.||.++...+...+. .... .. ...|+|
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl----t~~g------------~~--~~~~SP-- 328 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV----VFHG------------KN--NSSVST-- 328 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC----ccCC------------Cc--CceECC--
Confidence 554444444345568999998776555 45655666666655555432 1111 11 137888
Q ss_pred CCCEEEEEECC---------CeEEEEEccCCeEEE
Q 001279 189 SGNRVLIAYEN---------ALVILWDVSEAQIIF 214 (1108)
Q Consensus 189 ~~~~ll~~~~d---------g~V~lWdl~~~~~~~ 214 (1108)
+|+.++..... ..|.+.|+.++....
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~ 363 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR 363 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE
Confidence 67777655543 256777877776543
No 283
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.24 E-value=0.0066 Score=69.92 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=83.9
Q ss_pred EEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeec
Q 001279 508 RIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHAL 587 (1108)
Q Consensus 508 riWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~ 587 (1108)
.+|++....++.+... --...+.|.|++++|+...|+.|+.||.|++|+....
T Consensus 239 ciYE~~r~klqrvsvt--------sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~------------------- 291 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVT--------SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG------------------- 291 (545)
T ss_pred EEEEeecCceeEEEEE--------EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-------------------
Confidence 4677666655533221 2245568999999999999999999999999998775
Q ss_pred ccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE-------------EeecCCCCCCceEEE
Q 001279 588 PEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLF-------------FTDDISGSSSPIISM 654 (1108)
Q Consensus 588 ~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~-------------~~~~~~~h~~~V~~l 654 (1108)
+..+....-..+.++|+|+|.++++|++.|.+.+||+.-..+.. +......++.....+
T Consensus 292 --------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~i 363 (545)
T PF11768_consen 292 --------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHI 363 (545)
T ss_pred --------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhhee
Confidence 22233455668999999999999999999999999986544332 222333455566666
Q ss_pred Eeee
Q 001279 655 TWTE 658 (1108)
Q Consensus 655 ~fs~ 658 (1108)
+|.+
T Consensus 364 qW~~ 367 (545)
T PF11768_consen 364 QWAP 367 (545)
T ss_pred Eecc
Confidence 6663
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.22 E-value=9.7e-06 Score=83.98 Aligned_cols=218 Identities=15% Similarity=0.216 Sum_probs=137.5
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcc---eEE---eCCCCC------------CEEEEEEeeCC--CEEEEEe
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GLL---ISPSQL------------PYKNLEFLQNQ--GFLISIT 95 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~---~~~---~~~h~~------------~V~~l~fs~d~--~~L~S~s 95 (1108)
..|+++.|+..|.+||+|...|+|.+|...... -.+ ...|.. .|..+.|..++ .+++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 458999999999999999999999999875432 212 223332 46777887654 3566667
Q ss_pred CCCcEEEEEcCCCee-------------------------------------eee-------ecCCCCeeEEEEecCCCE
Q 001279 96 NDNEIQVWSLESRSL-------------------------------------ACC-------LKWESNITAFSVISGSHF 131 (1108)
Q Consensus 96 ~d~~I~vWd~~s~~~-------------------------------------~~~-------~~~~~~Itsl~~~~~~~~ 131 (1108)
.|.+|++|.+..+.+ ++. -.|+-.|.+++++.+...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 799999999865410 000 012335788889888887
Q ss_pred EEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe
Q 001279 132 MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1108)
Q Consensus 132 l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~ 211 (1108)
+++++ +-.|.+|+++..++.+.- ..+..|...+. ...|++..|||. ....+.-.++.|.|++-|++...
T Consensus 187 ~lSaD-dLrINLWnl~i~D~sFnI--VDiKP~nmeeL-------teVItSaeFhp~-~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 187 LLSAD-DLRINLWNLEIIDGSFNI--VDIKPHNMEEL-------TEVITSAEFHPE-MCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeecc-ceeeeeccccccCCceEE--EeccCccHHHH-------HHHHhhcccCHh-HcceEEEecCCCcEEehhhhhhh
Confidence 77664 556889999876665442 22333322221 145888999996 45567788899999999998542
Q ss_pred EE----EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 212 II----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 212 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
+- .++.- . +. +....... +-...|..+-| +++|++|++-.. -++++||.....
T Consensus 256 lcdn~~klfe~---~----~D---~v~~~ff~-------eivsSISD~kF-s~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 256 LCDNSKKLFEL---T----ID---GVDVDFFE-------EIVSSISDFKF-SDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hccCchhhhhh---c----cC---cccchhHH-------HHhhhhcceEE-cCCCcEEEEecc-ceEEEEeccccc
Confidence 21 01100 0 00 00000000 01345666775 599998887654 589999997654
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.22 E-value=1.8e-05 Score=80.42 Aligned_cols=210 Identities=15% Similarity=0.135 Sum_probs=117.1
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCE-----EEEEEeeCCCEEEEEe-----CCCcEEEEEcCCCee
Q 001279 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPY-----KNLEFLQNQGFLISIT-----NDNEIQVWSLESRSL 110 (1108)
Q Consensus 41 la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V-----~~l~fs~d~~~L~S~s-----~d~~I~vWd~~s~~~ 110 (1108)
-+.+--+..+++|..||.+-+++.+.. +...|.-++ -+.++...+..+.+.. .-+..+.|+++....
T Consensus 95 ~~~s~~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t 171 (319)
T KOG4714|consen 95 DACTMTDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT 171 (319)
T ss_pred ccccccCCceEecCCCceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc
Confidence 334445678899999999999998762 222222221 1222233334443322 233455555544332
Q ss_pred ee-eecCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 111 AC-CLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 111 ~~-~~~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
+. .......|++++.+|.. +.+++|+++|.+-+|+.... .... -.+..|. .++.-|.|||.
T Consensus 172 ~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~--S~l~ahk------------~~i~eV~FHpk- 234 (319)
T KOG4714|consen 172 LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPV--SLLKAHK------------AEIWEVHFHPK- 234 (319)
T ss_pred ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchH--HHHHHhh------------hhhhheeccCC-
Confidence 21 11222349999999875 56778999999999998752 1110 1133343 77999999998
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
++..|++++.||.+.-||.++.-+- .+.+......++. +.+.+ ..+..+......+.++--+.--|..|++|
T Consensus 235 ~p~~Lft~sedGslw~wdas~~~l~--i~~~~s~~s~WLs---gD~v~---s~i~i~~ll~~~~~SinsfDV~g~~lVcg 306 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDASTTFLS--ISNQASVISSWLS---GDPVK---SRIEITSLLPSRSLSINSFDVLGPCLVCG 306 (319)
T ss_pred CchheeEecCCCcEEEEcCCCceEE--ecCcccccccccc---CCccc---ceEeeeccccccceeeeeeeccCceEEec
Confidence 6667999999999999998864332 1111111110110 00000 00111111122333333222458899999
Q ss_pred EccCcEEEEe
Q 001279 269 YIDGDILLWN 278 (1108)
Q Consensus 269 ~~DG~I~lWd 278 (1108)
+.-+.|++.+
T Consensus 307 td~eaIyl~~ 316 (319)
T KOG4714|consen 307 TDAEAIYLTR 316 (319)
T ss_pred cccceEEEec
Confidence 9999998875
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.20 E-value=4.7e-05 Score=77.81 Aligned_cols=151 Identities=10% Similarity=0.052 Sum_probs=110.8
Q ss_pred EEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCC--CCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCcccc
Q 001279 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR--APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1108)
Q Consensus 498 latgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~--~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~ 575 (1108)
+..++.|.++++.+++.+..+ ..-|. ..+.++++++|++++++.++...|..|.+.....-
T Consensus 131 ~~i~sndht~k~~~~~~~s~~-------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey---- 193 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNK-------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY---- 193 (344)
T ss_pred eeeccCCcceeEEEEecCccc-------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce----
Confidence 455678899999998877654 11122 24788999999999999999999999999886431
Q ss_pred ccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEE--eecCCCCCCceEE
Q 001279 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFF--TDDISGSSSPIIS 653 (1108)
Q Consensus 576 ~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~--~~~~~~h~~~V~~ 653 (1108)
............=-+..|+.....+|+++.||++.|||++....... ...-+.|.+.|..
T Consensus 194 ------------------~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 194 ------------------IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRV 255 (344)
T ss_pred ------------------eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEE
Confidence 11112233445567888999999999999999999999987654321 1223458999999
Q ss_pred EEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcc
Q 001279 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 654 l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1108)
+.|++... -++|+..-.=+.+.|.|..++.
T Consensus 256 c~Fsl~g~--------------------lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 256 CRFSLYGL--------------------LDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEecCCCc--------------------ceEEEEecCcceEEEEEcccCc
Confidence 99996422 4567766667889999988754
No 287
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.00011 Score=86.16 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=97.2
Q ss_pred CCCceEEEEcCCCCEEEEEEC-CC----cEEEEecCC---cceE-EeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEE-
Q 001279 35 PATASILAFDHIQRLLAIATL-DG----RIKVIGGDG---IEGL-LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVW- 103 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~-dG----~I~iw~~~~---~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vW- 103 (1108)
++.....+|||||+.||..+. +| .+.+|+++. .... +...+.+.....+|+|||.+|+..+. ++...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 344556789999999987663 22 344466643 2222 22223344567899999998887774 5655555
Q ss_pred -EcCC-Ceeeeee-cCCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 104 -SLES-RSLACCL-KWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 104 -d~~s-~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
++.. +.....+ .....+....|+|++++|+.... +|.-.||.++...++..+ +.... ..+
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----Lt~~~------------~~~ 373 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----LTTSP------------ENK 373 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----ccCCC------------CCc
Confidence 4432 2222222 33456778899999998876543 343334444444455443 22111 235
Q ss_pred EEEecccCCCCCEEEEEEC---CCeEEEEEccCCeEEEEe
Q 001279 180 VGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~---dg~V~lWdl~~~~~~~~~ 216 (1108)
....|+| +|..|+.... ...|.+||+.+++...+.
T Consensus 374 ~~p~wSp--DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 374 ESPSWAI--DSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 6688988 6776665443 246788899888765443
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.18 E-value=6.2e-06 Score=60.71 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=35.9
Q ss_pred eEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001279 594 LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1108)
Q Consensus 594 ~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd 631 (1108)
+++.++.+|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36788999999999999999999999999999999997
No 289
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.17 E-value=0.00028 Score=73.36 Aligned_cols=184 Identities=11% Similarity=0.133 Sum_probs=119.3
Q ss_pred CCCcEEEEecCCcceE----EeCCCCCCEEEEEEee---CCC-EEEEEeCCCcEEEEEcCCCeeeeeecC-C------CC
Q 001279 55 LDGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQ---NQG-FLISITNDNEIQVWSLESRSLACCLKW-E------SN 119 (1108)
Q Consensus 55 ~dG~I~iw~~~~~~~~----~~~~h~~~V~~l~fs~---d~~-~L~S~s~d~~I~vWd~~s~~~~~~~~~-~------~~ 119 (1108)
..|.+.+|++...+.. +...-+..+-.+.|.. ++. .|+-+...|.|.++......-...+.. . ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 3478889987443221 2223344566666653 344 466677789999998765544333311 1 12
Q ss_pred eeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC
Q 001279 120 ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1108)
Q Consensus 120 Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d 199 (1108)
-.++.|++.+.-++++..+|.+.+..... ..+.. ......|+ -......|+-. +.+.+++|+.|
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~-vq~wk~He------------~E~Wta~f~~~-~pnlvytGgDD 187 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEK-VQTWKVHE------------FEAWTAKFSDK-EPNLVYTGGDD 187 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce--eeeee-cccccccc------------eeeeeeecccC-CCceEEecCCC
Confidence 45778888899999999999988554332 22222 12344444 34555666544 45779999999
Q ss_pred CeEEEEEccC-CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEe
Q 001279 200 ALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1108)
Q Consensus 200 g~V~lWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd 278 (1108)
+.+.-||++. +..++. + .+++ ...|.|+--..|++.+|++|+.|-.|++||
T Consensus 188 ~~l~~~D~R~p~~~i~~--n------~kvH--------------------~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 188 GSLSCWDIRIPKTFIWH--N------SKVH--------------------TSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred ceEEEEEecCCcceeee--c------ceee--------------------ecceEEEecCCCCCceEEEeccccceeeee
Confidence 9999999983 333332 1 0122 667888775667889999999999999999
Q ss_pred cCCC
Q 001279 279 TSTT 282 (1108)
Q Consensus 279 ~~~~ 282 (1108)
..+.
T Consensus 240 tRnm 243 (339)
T KOG0280|consen 240 TRNM 243 (339)
T ss_pred hhcc
Confidence 9754
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.16 E-value=0.0032 Score=73.62 Aligned_cols=109 Identities=13% Similarity=0.207 Sum_probs=69.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCC--e-e-------EEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWESN--I-T-------AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~--I-t-------sl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~ 157 (1108)
+..|+..+.++.|.-+|..+++.+........ + . +-...-.+..+++++.+|.++. +|..+|++.-.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~a--ld~~tG~~~W~- 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYA--LNAEDGEVAWQ- 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEE--EECCCCCCccc-
Confidence 46788888889999999999998877754331 0 0 0001123567888989996654 55555666521
Q ss_pred eeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeC
Q 001279 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~ 217 (1108)
+.+++ .+. -.|.-.+.+++++..+|.|.-+|..+++.++...
T Consensus 146 ~~~~~---------------~~~---ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 146 TKVAG---------------EAL---SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred ccCCC---------------cee---cCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 22221 111 1122123458888999999999999999887654
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.0011 Score=77.43 Aligned_cols=138 Identities=9% Similarity=0.023 Sum_probs=88.6
Q ss_pred CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCE-EEEEeCC---CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEE
Q 001279 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGF-LISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 132 (1108)
Q Consensus 57 G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~-L~S~s~d---~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l 132 (1108)
.+|.+-|.++.......... .+....|+|||.+ ++..+.+ ..|.++|+.+++........+...+..|+|+++.+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence 35666566655444333333 7889999999985 5544443 45999999998776666667777788999999877
Q ss_pred EE-EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC-C--eEEEEEcc
Q 001279 133 YI-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVS 208 (1108)
Q Consensus 133 ~v-g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d-g--~V~lWdl~ 208 (1108)
+. .+.+|.-.||.++...+.+.+ +..+. .......|+| +|++|+..+.. | .|.+.|+.
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~------------~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYP------------GIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEEE----cccCC------------CccCccEECC--CCCEEEEEECCCCCceEEEEECC
Confidence 64 444665566777655555543 22111 1123346888 78777666543 3 56777887
Q ss_pred CCeEE
Q 001279 209 EAQII 213 (1108)
Q Consensus 209 ~~~~~ 213 (1108)
+++..
T Consensus 310 ~g~~~ 314 (419)
T PRK04043 310 SGSVE 314 (419)
T ss_pred CCCeE
Confidence 77653
No 292
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.13 E-value=3.4e-05 Score=89.07 Aligned_cols=143 Identities=20% Similarity=0.290 Sum_probs=101.4
Q ss_pred cCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEE
Q 001279 484 SPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIY 563 (1108)
Q Consensus 484 ~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw 563 (1108)
..+...++....++++.|+.-|.+++++-.++.++. ....+-...+..+..+++..++|.|+..|.|.+|
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~----------~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK----------LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhc----------ccccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence 334444778888899999999999999988777551 1122234466777889999999999999999999
Q ss_pred EecCCCCCccccccccCccceeecccCCcceEEE-EE-eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEE
Q 001279 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRA-VF-SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL-LSVLFF 640 (1108)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~-~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~-~~~~~~ 640 (1108)
.+...-.. .+... .+ ..|...|||++|+++++.|.+|...|.|..-.+.. ...+..
T Consensus 104 ql~~~~p~---------------------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~ 162 (726)
T KOG3621|consen 104 QLNKELPR---------------------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSK 162 (726)
T ss_pred hhhccCCC---------------------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccc
Confidence 98874111 11111 11 23889999999999999999999999998887776 222222
Q ss_pred eecCCCCCCceEEEEee
Q 001279 641 TDDISGSSSPIISMTWT 657 (1108)
Q Consensus 641 ~~~~~~h~~~V~~l~fs 657 (1108)
.+.+-.-.++|..|.+.
T Consensus 163 ~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 163 SQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccCcceEEeecc
Confidence 23333355667766655
No 293
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00035 Score=81.59 Aligned_cols=73 Identities=18% Similarity=0.331 Sum_probs=64.6
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
|-.+++++|+|..-+||.|-.-|.+.+|.....+.. ....|+.+|+.|.||++|+.|+++..-|.|.+|....
T Consensus 59 P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 59 PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 344677999999999999999999999999766554 6678999999999999999999999999999998763
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00011 Score=86.50 Aligned_cols=158 Identities=22% Similarity=0.279 Sum_probs=109.2
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCC-EEEEEEeeCCCEEEEEeCCCc-----EEEEEcCCC--
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITNDNE-----IQVWSLESR-- 108 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~L~S~s~d~~-----I~vWd~~s~-- 108 (1108)
.|+| +++.+..+|.|+.+|+|-+++.......-...+... |+.|....+..+|++++.|.. |+|||++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 4444 788999999999999999998877665555555555 677766666689999997654 999998654
Q ss_pred ----eee--eee-c-----CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001279 109 ----SLA--CCL-K-----WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1108)
Q Consensus 109 ----~~~--~~~-~-----~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1108)
+++ +.+ . .+.++++++++.+-+.+++|-.+|.|..+.=|..+.+-.+..|..++ .
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-------------~ 171 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-------------K 171 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-------------C
Confidence 122 111 1 24679999999999999999999988776644322111111122221 2
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~ 211 (1108)
.+|+++.+ ..+++-++-+.....|.+|.++...
T Consensus 172 ~pITgL~~--~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 172 EPITGLAL--RSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred CCceeeEE--ecCCceeEEEEecceeEEEEecCCC
Confidence 78999999 4467654555556667889888544
No 295
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.08 E-value=5.1e-05 Score=78.65 Aligned_cols=155 Identities=12% Similarity=0.141 Sum_probs=110.6
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEeeC-CCEEEEEeCCCcEEEEEcC-CCeeee
Q 001279 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLE-SRSLAC 112 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWd~~-s~~~~~ 112 (1108)
.-++.|++.+.-++++..+|.+.+-+.... .+..+.+|+.+..-..|+.. ...+.++++|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 346778899999999999999985444222 22367789999999999764 3578999999999999998 333332
Q ss_pred --eecCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 113 --CLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 113 --~~~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
...|...|.++.-+|. ..++++|+-|-.|++||...-...+ +++. ..+.|..+.++|...
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl------~~~~-----------v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL------FKAK-----------VGGGVWRIKHHPEIF 266 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc------ccCc-----------cccceEEEEecchhh
Confidence 4467888999988864 6799999999999999965321111 1111 127899999999865
Q ss_pred CCEEEEEECCCeEEEEEccCC
Q 001279 190 GNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
+. |+.++.-.-.+|-+.+.+
T Consensus 267 ~~-lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 267 HR-LLAACMHNGAKILDSSDK 286 (339)
T ss_pred hH-HHHHHHhcCceEEEeccc
Confidence 54 555555444477776654
No 296
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=0.00029 Score=79.48 Aligned_cols=195 Identities=12% Similarity=0.210 Sum_probs=124.6
Q ss_pred CCCCceEEEEcCCC--CEEEE-----EECCCcEEEEecCCcceEE----eCCCCCCEEEEEEeeCCC-EEEEEeC--C--
Q 001279 34 IPATASILAFDHIQ--RLLAI-----ATLDGRIKVIGGDGIEGLL----ISPSQLPYKNLEFLQNQG-FLISITN--D-- 97 (1108)
Q Consensus 34 ~~~~is~la~sp~~--~~LA~-----Gs~dG~I~iw~~~~~~~~~----~~~h~~~V~~l~fs~d~~-~L~S~s~--d-- 97 (1108)
+...|+.+++||.. ..+|+ ++.-+.++||........- ..=....=..+.|.+-|. .|+-++. |
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 35668889999863 45666 3445889999886221110 000112223344555443 3333222 3
Q ss_pred -------CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001279 98 -------NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1108)
Q Consensus 98 -------~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1108)
.++.+.+++.....-.+.-.++|.++.|++++.-+++.. .--.+.|++++ +.++ |.++.
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr---~~~v---~df~e------ 311 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR---GKPV---FDFPE------ 311 (566)
T ss_pred CccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC---CCEe---EeCCC------
Confidence 358888888556666667789999999999997666553 45567777766 4554 44552
Q ss_pred cCCCCCCCCCeEEEecccCCCCCEEEE-EEC--CCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCC
Q 001279 169 AGFPLLSHQPVVGVLPHPNSSGNRVLI-AYE--NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1108)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~-~~~--dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1108)
++=.++-|+| .|+.+++ |+. .|.|-|||+.+.+.+.....
T Consensus 312 --------gpRN~~~fnp--~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--------------------------- 354 (566)
T KOG2315|consen 312 --------GPRNTAFFNP--HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--------------------------- 354 (566)
T ss_pred --------CCccceEECC--CCCEEEEeecCCCCCceEEEeccchhhcccccc---------------------------
Confidence 5667889999 5665554 444 37999999998766544321
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEc------cCcEEEEecCCC
Q 001279 246 QPEEKEISALCWASSSGSILAVGYI------DGDILLWNTSTT 282 (1108)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~~------DG~I~lWd~~~~ 282 (1108)
..-+-+.|. |||++++++.. |+.++||++...
T Consensus 355 ----~~tt~~eW~-PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 ----ANTTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ----CCceEEEEc-CCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 122334585 99999999865 678999998643
No 297
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=98.03 E-value=6.8e-06 Score=73.14 Aligned_cols=49 Identities=35% Similarity=0.483 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhh
Q 001279 1053 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1101 (1108)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~ 1101 (1108)
+.-..+..+=+++.||||||+.|++||++|+..|+.|.+-|++|-++|.
T Consensus 14 ~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 14 EVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999999999999999999998873
No 298
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=5.3e-06 Score=74.02 Aligned_cols=51 Identities=29% Similarity=0.644 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001279 1053 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1107 (1108)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 1107 (1108)
++...+..+=+|..||||||..|++||+.++++|..|-.-|..|.+| .||+
T Consensus 40 eVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk----~wWk 90 (116)
T KOG0860|consen 40 EVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRK----MWWK 90 (116)
T ss_pred HHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 45688999999999999999999999999999999999999988776 4886
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=1.9e-05 Score=87.41 Aligned_cols=176 Identities=10% Similarity=0.083 Sum_probs=117.0
Q ss_pred CcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceE
Q 001279 481 GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLV 560 (1108)
Q Consensus 481 g~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V 560 (1108)
||.+.+-.++.-.+.+-+++++.|.+|++|.+....-. .++...+.+...|..+|..+.|-.+.++++++ ||-+
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~----~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE----IGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc----cccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 34333333344556678999999999999987633211 11112224567899999999999999988855 7899
Q ss_pred EEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCC--CCEE-EEEeCCCeEEEEEccCceE
Q 001279 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS--GAKL-AVGFECGRVAVLDMNLLSV 637 (1108)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspd--g~~L-avGs~dG~V~vwd~~~~~~ 637 (1108)
.+||.-...-- . ........+.++.+..-++ ..++ |.++...+|+++|.+....
T Consensus 807 HlWDPFigr~L----------------a-------q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 807 HLWDPFIGRLL----------------A-------QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW 863 (1034)
T ss_pred eeecccccchh----------------H-------hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc
Confidence 99996443110 0 0011112334444444343 3334 4448889999999998766
Q ss_pred EEEeec--CCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecC
Q 001279 638 LFFTDD--ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 707 (1108)
Q Consensus 638 ~~~~~~--~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~ 707 (1108)
....+. .++...-+.+++.. +.++.|+++-..|+|.++|..+|++|++
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa----------------------~~GN~lAa~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVA----------------------DKGNKLAAALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred eeeEEeccCCCCchheeEEEec----------------------cCcchhhHHhcCCcEEEEecCCCceecc
Confidence 544333 35555667788777 4588899999999999999999999976
No 300
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=0.016 Score=59.62 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=74.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001279 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1108)
.+++.++..+.+.--|..+|.+........+|.+-+.- -++++++|+.+|.+++.++.+ |..... |.+-+.-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t--Gs~~w~-f~~~~~v---- 95 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT--GSQIWN-FVILETV---- 95 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecc--hhheee-eeehhhh----
Confidence 56677777888888899999888777666666665544 577899999999998888765 444432 2222110
Q ss_pred cCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE
Q 001279 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1108)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~ 215 (1108)
..--.+.| ++..+.+++.|++....|..+...++.
T Consensus 96 --------k~~a~~d~----~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 96 --------KVRAQCDF----DGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred --------ccceEEcC----CCceEEEecCCCcEEEecccccceEEe
Confidence 10111223 566799999999999999998877654
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.95 E-value=0.015 Score=67.85 Aligned_cols=175 Identities=11% Similarity=0.111 Sum_probs=101.0
Q ss_pred cccceeeeeeCCCCCce------EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCC---CEE-----EEE--Eee
Q 001279 23 DLNLRIAVHYGIPATAS------ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL---PYK-----NLE--FLQ 86 (1108)
Q Consensus 23 ~~~~~~~~~~G~~~~is------~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~---~V~-----~l~--fs~ 86 (1108)
.+.++...+..+...+. ..++ .+..+.+++.+|.|.-+|..+.+.+-...-.. .+. .+. -.-
T Consensus 41 ~~~~~~~W~~~~g~g~~~~~~~~sPvv--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v 118 (394)
T PRK11138 41 QFTPTTVWSTSVGDGVGDYYSRLHPAV--AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV 118 (394)
T ss_pred cCCcceeeEEEcCCCCccceeeeccEE--ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE
Confidence 35565566655444432 1122 36677888888999999987666553322111 000 000 011
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001279 87 NQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1108)
Q Consensus 87 d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1108)
++..++.++.++.|..+|.++++.+......+.+.+--.. .+..+++++.+|.+ +-+|..+|+.. ++.+....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l--~ald~~tG~~~---W~~~~~~~- 191 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGML--QALNESDGAVK---WTVNLDVP- 191 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEE--EEEEccCCCEe---eeecCCCC-
Confidence 3467888888999999999999999888665544332111 24577888888855 55555567765 33332110
Q ss_pred cccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
.. .. ....+|.-.+..++++..+|.+..+|..+++..+..
T Consensus 192 -~~--------~~-~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 192 -SL--------TL-RGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred -cc--------cc-cCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhee
Confidence 00 00 000122212334888889999999999998876543
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=2.4e-05 Score=82.62 Aligned_cols=153 Identities=16% Similarity=0.089 Sum_probs=113.4
Q ss_pred ecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCc
Q 001279 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETK 581 (1108)
Q Consensus 502 s~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~ 581 (1108)
+.+-.|-+-|+.++.-+ .+ ...+.|-++.|...+.++..|.++|.|..+|+.....
T Consensus 231 G~sqqv~L~nvetg~~q------------sf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----------- 286 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQQ------------SF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----------- 286 (425)
T ss_pred cccceeEEEEeeccccc------------cc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-----------
Confidence 34445666677666533 12 2445788999999999999999999999999987521
Q ss_pred cceeecccCCcceEEEEEeecCcCEEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecc
Q 001279 582 SEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFK 660 (1108)
Q Consensus 582 ~~~~~~~~~~g~~~~~~~~~h~~~Vtslafsp-dg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~ 660 (1108)
+.++.. ..-.|...||+|..-. ++++|.+.+.+|+|++||.+--+....+..+.||...-..+.|.
T Consensus 287 --------G~~~~a--~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~--- 353 (425)
T KOG2695|consen 287 --------GNGWCA--QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH--- 353 (425)
T ss_pred --------CCCcce--EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccc---
Confidence 333322 2246899999999887 78899999999999999998665532335666775544444333
Q ss_pred cCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 661 NTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 661 ~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
. ++++..+++++.|.-.++|....|.++++.
T Consensus 354 v-----------------~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 354 V-----------------KEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred c-----------------ccccceEEEccCeeEEEEEecccCceeecc
Confidence 2 256788999999999999999999999876
No 303
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=2.1e-05 Score=87.05 Aligned_cols=210 Identities=15% Similarity=0.194 Sum_probs=140.5
Q ss_pred ceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecC----Cc----ceEEeCCCCCCEEEEEEeeCCCEEEEEeCC
Q 001279 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD----GI----EGLLISPSQLPYKNLEFLQNQGFLISITND 97 (1108)
Q Consensus 26 ~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~----~~----~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d 97 (1108)
+|+....||...|.+++-=.+..-.++++.|.+|++|.+. +. ....-..|+.+|..+.|..+-++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 4667778999999988665566666799999999999872 11 223566799999999999997777766 8
Q ss_pred CcEEEEEcCCCeeeeeecC---CCCeeEEEEec--CCCEEEEE-eCCCcEEEEEEecCCCeeeeeceeecccccccccCC
Q 001279 98 NEIQVWSLESRSLACCLKW---ESNITAFSVIS--GSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1108)
Q Consensus 98 ~~I~vWd~~s~~~~~~~~~---~~~Itsl~~~~--~~~~l~vg-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1108)
+-|.+||.--++++..+.+ .+.++.+..-+ +...+..| +...+|+++|-.. +.... .+++-+.
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs--ce~~~-E~kVcna-------- 872 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS--CEWTC-ELKVCNA-------- 872 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc--cccee-eEEeccC--------
Confidence 8999999877777764421 23333333333 34455555 5677888776443 22111 1222110
Q ss_pred CCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCc
Q 001279 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1108)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1108)
.....-+.+++..| .|+.++.+-++|.|.+.|.++|+++...... +-.
T Consensus 873 -~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpm-----------------------------ecd 920 (1034)
T KOG4190|consen 873 -PGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPM-----------------------------ECD 920 (1034)
T ss_pred -CCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcc-----------------------------cch
Confidence 11125578888866 6888999999999999999999987644321 111
Q ss_pred eeEEEeecCCCCEEEEEEccCcEEE-EecCCC
Q 001279 252 ISALCWASSSGSILAVGYIDGDILL-WNTSTT 282 (1108)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~DG~I~l-Wd~~~~ 282 (1108)
...++ .|..+.|+....|.++.+ |...++
T Consensus 921 llqla--apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 921 LLQLA--APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred hhhhc--CchhHHHHhhcccceeEeeehhcCC
Confidence 11222 377788888888999988 876544
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.89 E-value=0.025 Score=63.54 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=60.9
Q ss_pred CCCCCeEEEEEEeCCCeEEEEe--cCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEE
Q 001279 534 GSRAPVSTLSFCFINSSLAVGN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 611 (1108)
Q Consensus 534 ~h~~~Vt~lafs~d~~~Lasg~--~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslaf 611 (1108)
+-..+|...+|.|+++.+++.+ ....+.++++..+ ..+.....+=..+-|
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------------------------l~~~~Pe~~rNT~~f 323 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------------------------LRFYFPEQKRNTIFF 323 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc----------------------------eEEecCCcccccccc
Confidence 4456999999999998887765 4778888888876 455666777778889
Q ss_pred cCCCCEEEEEe---CCCeEEEEEccCceEE
Q 001279 612 TSSGAKLAVGF---ECGRVAVLDMNLLSVL 638 (1108)
Q Consensus 612 spdg~~LavGs---~dG~V~vwd~~~~~~~ 638 (1108)
||.++++++++ -.|+|-+||..+...+
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceEE
Confidence 99999888743 4688999999887665
No 305
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.0045 Score=69.76 Aligned_cols=113 Identities=6% Similarity=0.065 Sum_probs=76.3
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC-----------CCcEEEEEE
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-----------NGLMSVIKY 146 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~-----------dg~V~vw~~ 146 (1108)
.=+.+.|||.|.||+|.... -|.+|--.+-..++.+.|++ |.-+.|+|..+||++=+. ...+.|||+
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 45789999999999999744 48899887777777777776 778899999999987542 357889998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC
Q 001279 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
.+ |.+... |.+..... ..---+.|+. ++++++.-.. ..|.||+..+
T Consensus 290 ~t--G~lkrs-F~~~~~~~-----------~~WP~frWS~--DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 290 AT--GLLKRS-FPVIKSPY-----------LKWPIFRWSH--DDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred cc--cchhcc-eeccCCCc-----------cccceEEecc--CCceeEEecc-ceEEEEecCc
Confidence 75 444432 33321110 1122345643 7876666555 4457887655
No 306
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.0001 Score=85.20 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=89.9
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCC--CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCee-
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP--SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL- 110 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~--h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~- 110 (1108)
+|..+.--+++...++||+|+.-|.+++|+..+.+...... ..+.+..+..+++..++|.+++.+.|.|+-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34455566788899999999999999999998776654443 455677777888877777777888888888776532
Q ss_pred ----eeee--cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 111 ----ACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 111 ----~~~~--~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
+... .|...|||++|++++..+++|+..|.|....++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2222 3577899999999999999999999998888875
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00083 Score=78.62 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=87.4
Q ss_pred ceEEEEcCCCCEEEEEE----CCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001279 38 ASILAFDHIQRLLAIAT----LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs----~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~ 113 (1108)
.+-..|+|...++|+++ ..|.|.||--.+. .-.-..-...+++|||+|..-.|+++-.-|.+.||+..+.+..+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGE-Pqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGE-PQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCC-CCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 34567999999999987 4488988865443 111111223467899999977788888889999999988876554
Q ss_pred e-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001279 114 L-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 114 ~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~ 149 (1108)
. .|+.+|+.+.|+++|..|.+++.-|.|.+|.++.-
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 3 78999999999999999999999999999999953
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.80 E-value=0.084 Score=65.61 Aligned_cols=215 Identities=14% Similarity=0.175 Sum_probs=128.4
Q ss_pred CCCceEEEEcCCCCEEEEEECCCc--EEEEecCCc-ce------EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001279 35 PATASILAFDHIQRLLAIATLDGR--IKVIGGDGI-EG------LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~--I~iw~~~~~-~~------~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~ 105 (1108)
++..-++.++|.....|+++..+. +.+|..... .+ .......+.|.++.|..++..++.+..+|.|.+-|.
T Consensus 18 ~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~ 97 (1265)
T KOG1920|consen 18 PGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDP 97 (1265)
T ss_pred CCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEcc
Confidence 334556666777777777643322 233333111 11 112223458999999999999999999999999999
Q ss_pred CCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC---CCee----------eeece-----eecccc-cc
Q 001279 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD---EGKL----------FQLPY-----NISADA-LS 166 (1108)
Q Consensus 106 ~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~---~~~l----------~~~~~-----~i~~~~-~~ 166 (1108)
++...-..-.-...|.+++|+|+.++++..+..+++.+...+-+ ...+ ....| .+.+.. ++
T Consensus 98 et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~ 177 (1265)
T KOG1920|consen 98 ETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQ 177 (1265)
T ss_pred cccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhh
Confidence 88766655566788999999999999999999888877665321 0011 10000 011100 00
Q ss_pred cccC--CCC---C---CCCCeEEEecccCCCCCEEEEEE----CC-CeEEEEEccCCeEEEEeCCCcccccccccCCCCC
Q 001279 167 EKAG--FPL---L---SHQPVVGVLPHPNSSGNRVLIAY----EN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1108)
Q Consensus 167 ~~~~--~~~---~---~~~~V~~v~f~P~~~~~~ll~~~----~d-g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1108)
.... .+. . -.+.=++|.| ..+|.++++.+ .+ ..|+|||-+ +.+......
T Consensus 178 ~~~~~~~~ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~--------------- 239 (1265)
T KOG1920|consen 178 AARQKIEKEKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP--------------- 239 (1265)
T ss_pred cccccccccccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc---------------
Confidence 0000 000 0 1122356889 77998777733 23 689999977 332211110
Q ss_pred CCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE---ccCcEEEEecCCC
Q 001279 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY---IDGDILLWNTSTT 282 (1108)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~---~DG~I~lWd~~~~ 282 (1108)
..+.-.+++|- |.|..+++-. +|++|.++..+..
T Consensus 240 --------------~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 240 --------------VEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred --------------ccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCc
Confidence 03445679997 8999988864 4567888876543
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0013 Score=71.28 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=64.5
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
..|..++|+|...| ++..++.+..|.|.|+.+..++..+.. .+.+.++|
T Consensus 194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a------------------------------~~~~wSC~ 242 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIA------------------------------YNQIWSCC 242 (463)
T ss_pred hhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheec------------------------------cCCceeee
Confidence 56999999997555 488899999999999999877655432 57899999
Q ss_pred eecCCCCEEEEEEccCcEEEEecCCCCCC
Q 001279 257 WASSSGSILAVGYIDGDILLWNTSTTAST 285 (1108)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~~~~~~ 285 (1108)
|.-.+..+|++|-.+|.|.+||+...+.+
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCCch
Confidence 98666789999999999999999876543
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.77 E-value=0.0038 Score=67.24 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=114.9
Q ss_pred CCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCC----CC
Q 001279 45 HIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWE----SN 119 (1108)
Q Consensus 45 p~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~----~~ 119 (1108)
+++..+.+++.++.|+.||..+.+.+....-..++.... ..++..++.++.++.|..+|..+++.+... ... ..
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 357777788999999999996666553333233322222 334467777778899999999999998874 322 11
Q ss_pred eeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC
Q 001279 120 ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1108)
Q Consensus 120 Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d 199 (1108)
.........++.++++..+|.|.. ++..+|++.-. +.+........+. .-......+.+. ++ .++++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~--~d~~tG~~~w~-~~~~~~~~~~~~~---~~~~~~~~~~~~---~~-~v~~~~~~ 182 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVA--LDPKTGKLLWK-YPVGEPRGSSPIS---SFSDINGSPVIS---DG-RVYVSSGD 182 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEE--EETTTTEEEEE-EESSTT-SS--EE---EETTEEEEEECC---TT-EEEEECCT
T ss_pred ccccCceEecCEEEEEeccCcEEE--EecCCCcEEEE-eecCCCCCCccee---eecccccceEEE---CC-EEEEEcCC
Confidence 223333334888999998886655 55556777632 2222110000000 000011233331 34 68888888
Q ss_pred Ce-EEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEe
Q 001279 200 AL-VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1108)
Q Consensus 200 g~-V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd 278 (1108)
+. +.+ |+.+++.++... ...+..+. ..++..|++++.+|.|..||
T Consensus 183 g~~~~~-d~~tg~~~w~~~-------------------------------~~~~~~~~--~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSKP-------------------------------ISGIYSLP--SVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SSEEEE-ETTTTEEEEEEC-------------------------------SS-ECECE--ECCCTEEEEEETTTEEEEEE
T ss_pred CeEEEE-ECCCCCEEEEec-------------------------------CCCccCCc--eeeCCEEEEEeCCCEEEEEE
Confidence 84 555 999998665221 11122212 26788888888999999999
Q ss_pred cCCCC
Q 001279 279 TSTTA 283 (1108)
Q Consensus 279 ~~~~~ 283 (1108)
..+++
T Consensus 229 ~~tG~ 233 (238)
T PF13360_consen 229 LKTGK 233 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 98873
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.77 E-value=0.0025 Score=73.20 Aligned_cols=107 Identities=17% Similarity=0.358 Sum_probs=72.1
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
..|++++++| +.++|+.|+.||.|++||...+...... . .-.++.++
T Consensus 260 s~v~~ca~sp--~E~kLvlGC~DgSiiLyD~~~~~t~~~k-a------------------------------~~~P~~ia 306 (545)
T PF11768_consen 260 SQVICCARSP--SEDKLVLGCEDGSIILYDTTRGVTLLAK-A------------------------------EFIPTLIA 306 (545)
T ss_pred CcceEEecCc--ccceEEEEecCCeEEEEEcCCCeeeeee-e------------------------------cccceEEE
Confidence 6799999999 4666999999999999998877433221 1 33467899
Q ss_pred eecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccccc-CCccEEEEEeec
Q 001279 257 WASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE-RRLPVIVLHWST 317 (1108)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~-~~~~i~~~~~~~ 317 (1108)
|+ |+|..+++|+..|.|.+||+.-.............|...+++.... ....+..++|..
T Consensus 307 WH-p~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~ 367 (545)
T PF11768_consen 307 WH-PDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAP 367 (545)
T ss_pred Ec-CCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEecc
Confidence 98 9999999999999999999875432222222233333334433221 223455667763
No 312
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.76 E-value=0.0015 Score=67.11 Aligned_cols=154 Identities=11% Similarity=-0.005 Sum_probs=105.8
Q ss_pred EEEEEECCCcEEEEecCCcceEEeCCCC-CCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-eeeee-e--cCCCCeeEE
Q 001279 49 LLAIATLDGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACC-L--KWESNITAF 123 (1108)
Q Consensus 49 ~LA~Gs~dG~I~iw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~~~~-~--~~~~~Itsl 123 (1108)
-+-.++.|.++++++++........... ..+.++.+++|+.++++++....|..|.+... +++.. . .....-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 3556777888888877654433222222 35889999999999999999999999998654 33222 2 334556788
Q ss_pred EEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEE
Q 001279 124 SVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1108)
Q Consensus 124 ~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~ 203 (1108)
+|+.....+|++.+||++.|||+.....-+.. +. .. -..+.+++..+.|+|-..-.+|+..-.-+.+.
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~----~s-st-------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAE----IS-ST-------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhh----hc-cc-------CCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 89999999999999999999998643211110 10 00 01234889999999854455566666667888
Q ss_pred EEEccCCeEEE
Q 001279 204 LWDVSEAQIIF 214 (1108)
Q Consensus 204 lWdl~~~~~~~ 214 (1108)
|-|+++.+-.+
T Consensus 278 v~D~R~~~~~q 288 (344)
T KOG4532|consen 278 VVDTRNYVNHQ 288 (344)
T ss_pred EEEcccCceee
Confidence 99998875433
No 313
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.74 E-value=0.0023 Score=67.02 Aligned_cols=189 Identities=12% Similarity=0.042 Sum_probs=118.3
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC------CeEEEEecCceEEEE
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN------SSLAVGNEFGLVYIY 563 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~------~~Lasg~~dG~V~lw 563 (1108)
+.+||+.+||.+...|+|+++|+.+..+- .+++.... ...-..+|..|.|.... ..|.+-+.+|.++=|
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~lf---~I~p~~~~--~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMGSELF---VIPPAMSF--PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEecccceeE---EcCccccc--CCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 78999999999999999999999875543 33332211 11234578888887542 256777888999888
Q ss_pred EecCCCCCccccccccCccceeecccCCcceEEEEEee---cCcCEEEEEEcCCCCEEEEEeCCC-----------eEEE
Q 001279 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL---VNSPVRALQFTSSGAKLAVGFECG-----------RVAV 629 (1108)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---h~~~Vtslafspdg~~LavGs~dG-----------~V~v 629 (1108)
-++..++ .+++-..+|.. +...|+++.|+|..++|.+|+..- -+.-
T Consensus 125 ~vs~gt~--------------------q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLta 184 (282)
T PF15492_consen 125 LVSVGTN--------------------QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTA 184 (282)
T ss_pred EEEcccC--------------------CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceE
Confidence 8754321 12222333332 577999999999999998886321 1566
Q ss_pred EEccCceEEEEeecCCCCCCceE----EEEeeeccc--CccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcc
Q 001279 630 LDMNLLSVLFFTDDISGSSSPII----SMTWTEFKN--THSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 630 wd~~~~~~~~~~~~~~~h~~~V~----~l~fs~~~~--~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1108)
|.+-++..-+..-. .....+. ...|-.... .-+.-....+...+++..|++..|++..-+|.|.+|+..+-.
T Consensus 185 WRiL~~~Pyyk~v~--~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 185 WRILSDSPYYKQVT--SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEEcCCCCcEEEcc--ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 77666554433111 1222221 111111100 000113345566777888999999999999999999987644
Q ss_pred ee
Q 001279 704 MI 705 (1108)
Q Consensus 704 ~l 705 (1108)
++
T Consensus 263 ~~ 264 (282)
T PF15492_consen 263 LQ 264 (282)
T ss_pred hh
Confidence 43
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.73 E-value=6.3e-05 Score=55.26 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=32.3
Q ss_pred eccCCCCCeEEEEEEeCCCeEEEEecCceEEEEE
Q 001279 531 EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1108)
Q Consensus 531 ~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~ 564 (1108)
.+.+|..+|++|+|+|++++|++++.|+.|+||+
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4779999999999999999999999999999997
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.00015 Score=76.82 Aligned_cols=166 Identities=14% Similarity=0.187 Sum_probs=112.9
Q ss_pred eCCCCCceEEEEcCC--CCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-
Q 001279 32 YGIPATASILAFDHI--QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR- 108 (1108)
Q Consensus 32 ~G~~~~is~la~sp~--~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~- 108 (1108)
+.+|..-.| |++-+ +-..++| .+-.|-|-++.+.....+. ..+.|-+++|...+..|+.++..|.|.+.|++.+
T Consensus 209 lQi~~a~~C-awSlni~gyhfs~G-~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 209 LQIPKAWSC-AWSLNIMGYHFSVG-LSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred ecCCcchhh-hhhhccceeeeccc-ccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecc
Confidence 344555555 55522 2223344 4566777777543332222 4567999999998899999999999999999876
Q ss_pred ----eeeeeecCCCCeeEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 109 ----SLACCLKWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 109 ----~~~~~~~~~~~Itsl~~~~-~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
...+.+-|++.||++..-. +.++|.+.+-+|.|++||+.....+...+. ..+|. ..-.-+.
T Consensus 286 qG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q--YeGHv------------N~~a~l~ 351 (425)
T KOG2695|consen 286 QGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ--YEGHV------------NLSAYLP 351 (425)
T ss_pred cCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee--eeccc------------ccccccc
Confidence 4567778999999999887 788999999999999999876433222111 33442 1111111
Q ss_pred --cccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 184 --PHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 184 --f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
.+|. +|. +++++.|...|||.++.+.+....
T Consensus 352 ~~v~~e-eg~-I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 352 AHVKEE-EGS-IFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred cccccc-cce-EEEccCeeEEEEEecccCceeecc
Confidence 2222 454 888999999999999999887654
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.69 E-value=0.0012 Score=69.02 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=57.7
Q ss_pred CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeecee----ecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYN----ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 117 ~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~----i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
...|+++-|...|.|+++|+..|.|-++.-....++ .|+ +.+|++.=....+..-...|..+.|--.....+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c----eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC----EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccccc----chhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 357999999999999999999996655443322221 232 233321100000111124578888854335566
Q ss_pred EEEEECCCeEEEEEccCCeE
Q 001279 193 VLIAYENALVILWDVSEAQI 212 (1108)
Q Consensus 193 ll~~~~dg~V~lWdl~~~~~ 212 (1108)
++....|.+|++|-+-...+
T Consensus 102 FLlstNdktiKlWKiyeknl 121 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNL 121 (460)
T ss_pred EEEecCCceeeeeeeecccc
Confidence 99999999999999877644
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.67 E-value=0.025 Score=61.31 Aligned_cols=190 Identities=14% Similarity=0.133 Sum_probs=115.5
Q ss_pred eCCCCCceEEEEc-CCCCEEEEEECCCcEEEEecCCcceE--EeC---C-CCCCEEEEEEeeCCCEEEEEeCC-------
Q 001279 32 YGIPATASILAFD-HIQRLLAIATLDGRIKVIGGDGIEGL--LIS---P-SQLPYKNLEFLQNQGFLISITND------- 97 (1108)
Q Consensus 32 ~G~~~~is~la~s-p~~~~LA~Gs~dG~I~iw~~~~~~~~--~~~---~-h~~~V~~l~fs~d~~~L~S~s~d------- 97 (1108)
+..+. ...++++ ++ ..|.++..++ +.++|....++. ... . .......+++.++|.+.++....
T Consensus 37 ~~~~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 37 IDLPG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGID 113 (246)
T ss_dssp EESSS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG
T ss_pred EecCC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccc
Confidence 33444 6677888 56 4455555544 566687655433 222 1 33478899999998877776643
Q ss_pred -CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeec--eeecccccccccCCCC
Q 001279 98 -NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLP--YNISADALSEKAGFPL 173 (1108)
Q Consensus 98 -~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~--~~i~~~~~~~~~~~~~ 173 (1108)
+.|..++.. ++.......-.....++|+|+++.|++.. ..+.|+.++++.....+.... +.++...
T Consensus 114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------- 183 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP--------- 183 (246)
T ss_dssp SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---------
T ss_pred ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---------
Confidence 447777777 55444444445678999999999888765 456555555554444232110 1122110
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCcee
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 253 (1108)
+..-.+++.. +|+..++.+..+.|.++|.+ ++++....- . ...++
T Consensus 184 ---g~pDG~~vD~--~G~l~va~~~~~~I~~~~p~-G~~~~~i~~---------p--------------------~~~~t 228 (246)
T PF08450_consen 184 ---GYPDGLAVDS--DGNLWVADWGGGRIVVFDPD-GKLLREIEL---------P--------------------VPRPT 228 (246)
T ss_dssp ---CEEEEEEEBT--TS-EEEEEETTTEEEEEETT-SCEEEEEE----------S--------------------SSSEE
T ss_pred ---cCCCcceEcC--CCCEEEEEcCCCEEEEECCC-ccEEEEEcC---------C--------------------CCCEE
Confidence 3477888854 78877777789999999988 655443321 0 35789
Q ss_pred EEEeecCCCCEEEEEE
Q 001279 254 ALCWASSSGSILAVGY 269 (1108)
Q Consensus 254 sl~w~spdg~~l~sg~ 269 (1108)
++||..++...|+..+
T Consensus 229 ~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 229 NCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEESTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEe
Confidence 9998667877776654
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0031 Score=68.51 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=70.6
Q ss_pred EeCCCCCCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEec
Q 001279 71 LISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~ 148 (1108)
++..|...|+.|+|||.. +.|..++-++.|+|.|+++...+..+.....+.+++|+-+. ++++.|..+|.|.|+|+..
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 455567789999999964 47888899999999999999999888777999999999764 7999999999999999876
Q ss_pred CCCeee
Q 001279 149 DEGKLF 154 (1108)
Q Consensus 149 ~~~~l~ 154 (1108)
.++-+.
T Consensus 268 ~~~~~~ 273 (463)
T KOG1645|consen 268 PEGPLM 273 (463)
T ss_pred CCchHh
Confidence 544443
No 319
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.0063 Score=68.94 Aligned_cols=144 Identities=16% Similarity=0.235 Sum_probs=98.1
Q ss_pred CCEEEEEEC---------C-CcEEEEecCCc-----ce--EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 47 QRLLAIATL---------D-GRIKVIGGDGI-----EG--LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 47 ~~~LA~Gs~---------d-G~I~iw~~~~~-----~~--~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
..++|+|+. . |+|.+|.+... +. +......++|++|+-. + ++|+.+ .++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~-~~lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-N-GRLVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-T-TEEEEE-ETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-C-CEEEEe-ecCEEEEEEccCcc
Confidence 689999985 2 99999999763 22 3344567899999887 3 344444 36999999998888
Q ss_pred -eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 110 -LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 110 -~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
+...-.+...+...+....++++++|+....+.++.|+....++........ .-+++++.|-+.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~--------------~~~v~~~~~l~d- 183 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQ--------------PRWVTAAEFLVD- 183 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS---------------BEEEEEEEE-S-
T ss_pred cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCC--------------CccEEEEEEecC-
Confidence 6555544444444444445779999999999999999875544554211111 145888888653
Q ss_pred CCCEEEEEECCCeEEEEEccC
Q 001279 189 SGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
++.++++..+|.+.++....
T Consensus 184 -~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 184 -EDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSEEEEEETTSEEEEEEE-S
T ss_pred -CcEEEEEcCCCeEEEEEECC
Confidence 34799999999999988763
No 320
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.61 E-value=0.00031 Score=81.04 Aligned_cols=122 Identities=14% Similarity=0.186 Sum_probs=93.5
Q ss_pred eeeeeCCCCCceEEEEcCCCC-EEEEEECCCcEEEEecCCcce--EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001279 28 IAVHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEG--LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 28 ~~~~~G~~~~is~la~sp~~~-~LA~Gs~dG~I~iw~~~~~~~--~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd 104 (1108)
....+||...|+.+-|.|... +||+++.|-.+..||...... .....-...-+.+.|+.-...++..+..+.|.|||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 456789999999999999765 799999999999999865433 23333344567788887656677777899999999
Q ss_pred cCCC-eeeeee-cCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecC
Q 001279 105 LESR-SLACCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 105 ~~s~-~~~~~~-~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~ 149 (1108)
.+.+ ..++.+ .+...|..+.|..- ...+.+.+.||+|+.|+++..
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 9887 455555 56677777777643 346788899999999999863
No 321
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.57 E-value=0.14 Score=53.08 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=48.4
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
-|+++++|+.+|.+.+.+.+++...+.+.- .+.-.+...| .+++..|.+|
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----------------------------~~~vk~~a~~--d~~~glIycg 111 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----------------------------LETVKVRAQC--DFDGGLIYCG 111 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeee----------------------------hhhhccceEE--cCCCceEEEe
Confidence 366799999999999999999966554422 0122344455 4899999999
Q ss_pred EccCcEEEEecCCC
Q 001279 269 YIDGDILLWNTSTT 282 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1108)
+.||.++.-|..+.
T Consensus 112 shd~~~yalD~~~~ 125 (354)
T KOG4649|consen 112 SHDGNFYALDPKTY 125 (354)
T ss_pred cCCCcEEEeccccc
Confidence 99999999988754
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0031 Score=69.39 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=83.1
Q ss_pred EEEEEecCCcEEEEeCCCC----ceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCC-
Q 001279 497 VYLAGYHDGSVRIWDATYP----VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA- 571 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~----~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~- 571 (1108)
..++....|.|.-|..... .-...+.++.+..-..+..-....+++.|+|++..+.+-+.|..|+++.+.++.--
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 5666667789999988741 11112222221111112233456789999999999999999999999999886311
Q ss_pred ------ccccccccCccceeecccCCcceEEEEEeecC-cCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE
Q 001279 572 ------KNFLFVLETKSEVHALPEGKISLCRAVFSLVN-SPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1108)
Q Consensus 572 ------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~-~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~ 638 (1108)
...++.+...-++..+.-+.....-..+..|. ..-+...|...+++|.-|+-=| |+|+++.+++++
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 00111111111111000000000001122232 3446788999999999999988 899999999988
No 323
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.46 E-value=0.0016 Score=75.47 Aligned_cols=164 Identities=10% Similarity=0.145 Sum_probs=121.2
Q ss_pred eeeCCCCCceEEEEcCC--CCEEEEEECCCcEEEEecC----CcceEEeCCCCCCEEEEEEeeC-CCEEEEEeCCCcEEE
Q 001279 30 VHYGIPATASILAFDHI--QRLLAIATLDGRIKVIGGD----GIEGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQV 102 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~--~~~LA~Gs~dG~I~iw~~~----~~~~~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~v 102 (1108)
.|+--|-.+....++|. -.+-++.+....-.+|++. ..-.+.+++|..+|+.+-|.+. ...|++++.|..+..
T Consensus 62 l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~ 141 (1081)
T KOG0309|consen 62 LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHA 141 (1081)
T ss_pred eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccccccee
Confidence 44445556666777754 4577888888888899983 2334578899999999999985 457899999999999
Q ss_pred EEcCCC-eeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 103 WSLESR-SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 103 Wd~~s~-~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
||+++- .++.+. .+...-+.+.|+.....+.+.+....|+||+..... ... ..+.+|. ..|.
T Consensus 142 wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-~pl---~s~K~~v------------s~vn 205 (1081)
T KOG0309|consen 142 WDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-TPL---CSLKGHV------------SSVN 205 (1081)
T ss_pred eeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC-cce---EEecccc------------eeee
Confidence 999875 345444 667777889999888777888888889999976532 222 2244443 6688
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
++.|... -..++++.+.||+|+.||.+..
T Consensus 206 ~~~fnr~-~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 206 SIDFNRF-KYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hHHHhhh-hhhhhcccCCCCceeeeccccc
Confidence 8888654 3344899999999999998764
No 324
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.43 E-value=0.073 Score=57.64 Aligned_cols=192 Identities=18% Similarity=0.151 Sum_probs=121.0
Q ss_pred eEEEEcC-CCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEe-eCCCEEEEEeCCCcEEEEEcCCCeeeeeec-
Q 001279 39 SILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFL-QNQGFLISITNDNEIQVWSLESRSLACCLK- 115 (1108)
Q Consensus 39 s~la~sp-~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs-~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~- 115 (1108)
...+|++ ++.++.+-...+.|+.|+..+.......... ...+.+. ++ +.|+.+.. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEeec
Confidence 3678998 7888888878899999999877665433322 6667777 56 56666654 445566999986554432
Q ss_pred -----CCCCeeEEEEecCCCEEEEEeCCCc------EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 116 -----WESNITAFSVISGSHFMYIGDENGL------MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 116 -----~~~~Itsl~~~~~~~~l~vg~~dg~------V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
.....+.+++++++++.++...... =+||.++.. ++.... ... + .....|+|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~~--~-----------~~pNGi~~ 141 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---ADG--L-----------GFPNGIAF 141 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EEE--E-----------SSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE---ecC--c-----------ccccceEE
Confidence 2246888999999995554443311 256777765 554432 111 1 45789999
Q ss_pred ccCCCCCEEE-EEECCCeEEEEEccCCe--EEE--EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeec
Q 001279 185 HPNSSGNRVL-IAYENALVILWDVSEAQ--IIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1108)
Q Consensus 185 ~P~~~~~~ll-~~~~dg~V~lWdl~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1108)
+| +++.|+ +-+..+.|..|++.... +.. .+.. +. ...+..-.++..
T Consensus 142 s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~--------~~------------------~~~g~pDG~~vD- 192 (246)
T PF08450_consen 142 SP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID--------FP------------------GGPGYPDGLAVD- 192 (246)
T ss_dssp ET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---------S------------------SSSCEEEEEEEB-
T ss_pred CC--cchheeecccccceeEEEeccccccceeeeeeEEE--------cC------------------CCCcCCCcceEc-
Confidence 88 676665 45667788888886432 211 1100 00 001235667854
Q ss_pred CCCCEEEEEEccCcEEEEecC
Q 001279 260 SSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~ 280 (1108)
.+|...++....+.|.+++..
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT
T ss_pred CCCCEEEEEcCCCEEEEECCC
Confidence 899988888889999999976
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0083 Score=70.89 Aligned_cols=139 Identities=16% Similarity=0.227 Sum_probs=100.4
Q ss_pred CcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccc
Q 001279 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1108)
Q Consensus 495 ~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1108)
+..++-|..+|.|++.+.+... . . ...|+.. ..+|.++++|+.||.|.|-.+.+....
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~-----------~-~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~--- 106 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-K-----------T-NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI--- 106 (846)
T ss_pred cceeeeccccceEEEEecCCcc-c-----------c-ccccccc------ccCCceEEEecCCCcEEEeeccCCccc---
Confidence 4589999999999999987664 2 1 2234333 668999999999999999887765321
Q ss_pred cccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCC-----CCEEEEEeCCCeEEEEEcc---CceEEEEeecCCC
Q 001279 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-----GAKLAVGFECGRVAVLDMN---LLSVLFFTDDISG 646 (1108)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspd-----g~~LavGs~dG~V~vwd~~---~~~~~~~~~~~~~ 646 (1108)
.. .....++.+++++|+ .+.+++|+..| +.++.-. ....+ .+..
T Consensus 107 ----------------------~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----~l~~ 158 (846)
T KOG2066|consen 107 ----------------------TQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----VLSE 158 (846)
T ss_pred ----------------------ee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce----eeec
Confidence 11 234678999999998 57899999999 6666432 11111 2344
Q ss_pred CCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
-.++|.++.|. +++++-+..+| |.|+|..++..|..-
T Consensus 159 ~eG~I~~i~W~------------------------g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 159 GEGPIHSIKWR------------------------GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred CccceEEEEec------------------------CcEEEEecCCC-cEEEeccccceeecc
Confidence 67899999999 66666666665 689999988877654
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.32 E-value=0.099 Score=56.83 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=71.0
Q ss_pred CCCCceEEEEcC-CCCEEEEEECCCcE-EEEecCCcceE-EeCCCCC--CEEEEEEeeCCCEEEEEeC-----CCcEEEE
Q 001279 34 IPATASILAFDH-IQRLLAIATLDGRI-KVIGGDGIEGL-LISPSQL--PYKNLEFLQNQGFLISITN-----DNEIQVW 103 (1108)
Q Consensus 34 ~~~~is~la~sp-~~~~LA~Gs~dG~I-~iw~~~~~~~~-~~~~h~~--~V~~l~fs~d~~~L~S~s~-----d~~I~vW 103 (1108)
+|.....++.+| ....+|++-.-|+- .+||..+.+.. .+....+ =+=.-.||+||.+|++.=. .|.|.||
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 456667788999 67788889888775 66888665544 2222222 2345679999999998755 3669999
Q ss_pred EcC-CCeeeeeec-CCCCeeEEEEecCCCEEEEEe
Q 001279 104 SLE-SRSLACCLK-WESNITAFSVISGSHFMYIGD 136 (1108)
Q Consensus 104 d~~-s~~~~~~~~-~~~~Itsl~~~~~~~~l~vg~ 136 (1108)
|+. +-+.+..+. +.-...-+.+.|+++.|+++.
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 998 444555553 333455677899998888874
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0018 Score=71.21 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=137.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE----EeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCC
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLES 107 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~----~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s 107 (1108)
=|...|+.+.- .-..++.+++.||.++.|.-...+.+ ....|-+.|..|+.+.++..+.|++. |..++++|+++
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 34445554443 35689999999999999998664433 33457789999999999999999888 99999999988
Q ss_pred Ceeeeeec---CCCCeeEEEEecCC-CEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 108 RSLACCLK---WESNITAFSVISGS-HFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 108 ~~~~~~~~---~~~~Itsl~~~~~~-~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
-....-+. .++.+..+.-..+. ..++++. .+|.+.|+|--. ...+..|.-.- +..+|..+
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~---d~~q~~~fkkl------------H~sPV~~i 150 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFG---DFCQDGYFKKL------------HFSPVKKI 150 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcC---CcCccceeccc------------ccCceEEE
Confidence 76554332 33433332221111 2555555 467666655221 22111122222 23789999
Q ss_pred ecccCCCCCEEEEEECCCeEEEEEccC------CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 183 LPHPNSSGNRVLIAYENALVILWDVSE------AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~lWdl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
.+.|. +.-+++.-..|.|.-|.... .++.+-..|...-+ .-.......++++
T Consensus 151 ~y~qa--~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy--------------------~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 151 RYNQA--GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY--------------------GFPKAKTEPTSFE 208 (558)
T ss_pred Eeecc--ccceeeccccceeEeecCCCcccCccccccccccccchhh--------------------cccccccCccceE
Confidence 99885 55478888899999999884 11111111100000 0001155678899
Q ss_pred eecCCCCEEEEEEccCcEEEEecCCCCCCC
Q 001279 257 WASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1108)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~~~~~~~ 286 (1108)
+ +|+|..+.+-..|..|++++..++...+
T Consensus 209 f-sp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 209 F-SPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred E-ccccCcccccCcccEEEEEEeccchhhh
Confidence 6 5999999999999999999999886443
No 328
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.25 E-value=0.026 Score=60.67 Aligned_cols=145 Identities=13% Similarity=0.191 Sum_probs=89.9
Q ss_pred CCcEEEEecCCcceEEeCCCCCCEEEEE--EeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEE
Q 001279 56 DGRIKVIGGDGIEGLLISPSQLPYKNLE--FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1108)
Q Consensus 56 dG~I~iw~~~~~~~~~~~~h~~~V~~l~--fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~ 133 (1108)
+|.|..||..+.+.+-............ ..++++++++++.++.|..||..+++.+......+.+...- ...+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccc
Confidence 6888888886555553332211122222 34456788888999999999999999998886655433322 34566778
Q ss_pred EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEE
Q 001279 134 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 213 (1108)
Q Consensus 134 vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~ 213 (1108)
+++.++ +++.++..+|++.-..+...... ..........+ .+.+++++..++.|..+|+++++.+
T Consensus 81 v~~~~~--~l~~~d~~tG~~~W~~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 81 VGTSDG--SLYALDAKTGKVLWSIYLTSSPP---------AGVRSSSSPAV----DGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTS--EEEEEETTTSCEEEEEEE-SSCT---------CSTB--SEEEE----ETTEEEEEETCSEEEEEETTTTEEE
T ss_pred ccccee--eeEecccCCcceeeeeccccccc---------cccccccCceE----ecCEEEEEeccCcEEEEecCCCcEE
Confidence 888888 45556666677763211111000 00011122222 3667899999999999999999987
Q ss_pred EEe
Q 001279 214 FVG 216 (1108)
Q Consensus 214 ~~~ 216 (1108)
+..
T Consensus 146 w~~ 148 (238)
T PF13360_consen 146 WKY 148 (238)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.24 E-value=0.046 Score=62.93 Aligned_cols=205 Identities=14% Similarity=0.154 Sum_probs=118.7
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEec--C---C---------------------cce------------------EEe
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGG--D---G---------------------IEG------------------LLI 72 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~--~---~---------------------~~~------------------~~~ 72 (1108)
.|+.+.|+++..-||+|...|.|-||.. + + ..+ .+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4789999999999999999999999843 1 0 000 012
Q ss_pred CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec---------CCCCeeEEEEec-----CC---CEEEEE
Q 001279 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK---------WESNITAFSVIS-----GS---HFMYIG 135 (1108)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~---------~~~~Itsl~~~~-----~~---~~l~vg 135 (1108)
....++|++|+.| |-++++.+..+|.+.|-|++...++.... ....|+++.|.- ++ -.|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2246899999997 55899999999999999998888776531 123688888872 22 589999
Q ss_pred eCCCcEEEEEEec-CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC-------------------CCCEEEE
Q 001279 136 DENGLMSVIKYDA-DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-------------------SGNRVLI 195 (1108)
Q Consensus 136 ~~dg~V~vw~~d~-~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-------------------~~~~ll~ 195 (1108)
...|.+.++++.. ..+.......... ..+.++|..+..--.+ .-..+++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~-----------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGAT-----------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE-------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeecc-----------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 9999999998864 2232221111111 0011333333211000 0122677
Q ss_pred EECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEee----cCCCCEEEEEEcc
Q 001279 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA----SSSGSILAVGYID 271 (1108)
Q Consensus 196 ~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~----spdg~~l~sg~~D 271 (1108)
...+..++++...+.+.....-- . .....++++. ...+..|++-..+
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~-~----------------------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFD-D----------------------------PFLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-S-S-----------------------------EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred EEcccceEEEeCCCCcccceeec-c----------------------------ccccceEEEEeecccCCceEEEEEECC
Confidence 77788889999887765332100 0 1122334443 1356788999999
Q ss_pred CcEEEEecCCC
Q 001279 272 GDILLWNTSTT 282 (1108)
Q Consensus 272 G~I~lWd~~~~ 282 (1108)
|.++++.+...
T Consensus 282 G~i~i~SLP~L 292 (395)
T PF08596_consen 282 GSIRIYSLPSL 292 (395)
T ss_dssp SEEEEEETTT-
T ss_pred CcEEEEECCCc
Confidence 99999999865
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.00026 Score=82.97 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=110.8
Q ss_pred ccceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC-cceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC--cE
Q 001279 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITNDN--EI 100 (1108)
Q Consensus 24 ~~~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~--~I 100 (1108)
|.++.++| -+...-+|++|+-+.+.|++|+..|.|++|+... ...-....|+.+|+.+.=+.+|..+++.+.-. ..
T Consensus 1091 Fr~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 33344444 4567889999999999999999999999999964 44446678999999999999988777665433 58
Q ss_pred EEEEcCC-CeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 101 QVWSLES-RSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 101 ~vWd~~s-~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
.+|+..+ +...+++. .-.++.|+....+-++|+......|+|..+ +...++ | +.+.. +.. -.=
T Consensus 1170 aLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT--~~~l~t-y-lt~~~-----~~~----y~~ 1233 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQT--CSPLQT-Y-LTDTV-----TSS----YSN 1233 (1516)
T ss_pred HHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEeccc--CcHHHH-h-cCcch-----hhh----hhc
Confidence 8999865 23333332 234677777777777787766666777654 332221 1 11110 000 112
Q ss_pred EEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
.+..|+|+ .+++ ..|| .+||++..+.+..+
T Consensus 1234 n~a~FsP~--D~LI---lndG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1234 NLAHFSPC--DTLI---LNDG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred cccccCCC--cceE---eeCc--eeeeeccHHHHhhh
Confidence 67789995 3322 4677 48999887655443
No 331
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.13 E-value=0.12 Score=56.99 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCCCcEEEEEecCCcEEEEeCC-CCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCC
Q 001279 492 HSVDRVYLAGYHDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1108)
Q Consensus 492 s~~~~llatgs~DGtVriWd~~-~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~ 570 (1108)
...++.|+.|.++| |.+++.. ......+ .+..+|+.|...++-+.|++-+ |+.+.+|++..-..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRI-------------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeE-------------eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence 44566888899999 8999882 2222211 1122499999999888777665 49999999986532
Q ss_pred CccccccccCccceeecccCCcceEEEEEeecCcCEEEEE---EcCCCCEEEEEeCCCeEEEEEccCceE----EEEeec
Q 001279 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ---FTSSGAKLAVGFECGRVAVLDMNLLSV----LFFTDD 643 (1108)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtsla---fspdg~~LavGs~dG~V~vwd~~~~~~----~~~~~~ 643 (1108)
..........+.. ....-......+...+ -.....+|+++... .|.+|....+.. .+..-.
T Consensus 69 ~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 69 VSTSAPLAFPKSR-----------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred ccccccccccccc-----------cccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEE
Confidence 2110000000000 0000011122333333 11234566666654 789988876421 222212
Q ss_pred CCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcce
Q 001279 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1108)
Q Consensus 644 ~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~ 704 (1108)
.+..+.++.|. ++.|++|..++ ..++|.++|..
T Consensus 137 ---lp~~~~~i~~~------------------------~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 137 ---LPDPPSSIAFL------------------------GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred ---cCCCcEEEEEe------------------------CCEEEEEeCCc-eEEEecCCCCc
Confidence 55888999998 45677777555 77899887664
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.07 E-value=0.1 Score=55.85 Aligned_cols=176 Identities=15% Similarity=0.204 Sum_probs=100.0
Q ss_pred eeeCCCCCceEEEEcCCCC-EEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 30 VHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~-~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
..-|+...++.|+|+|+.. +.|+....+.|..++.++.-.. .....-+....|++..++.++++--.++.+.+.++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3358888999999999755 6777777788888888754332 2223346799999998876666554588899998833
Q ss_pred Ce----e--eeee--c----CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC--CCeeeeeceeecccccccccCCCC
Q 001279 108 RS----L--ACCL--K----WESNITAFSVISGSHFMYIGDENGLMSVIKYDAD--EGKLFQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 108 ~~----~--~~~~--~----~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~--~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1108)
.. . ...+ . ....+-.++|++.++.|+++-+..-..|+.++.. ...+... . ... ... ..
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~-~-~~~--~~~----~~ 167 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS-D-DQD--LDD----DK 167 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE-E--HH--HH-----HT
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec-c-ccc--ccc----cc
Confidence 21 1 1112 1 2245899999999999998888777777777641 1111100 0 000 000 01
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~ 215 (1108)
....-+.+++++|. .+.+++....+..|..+| ..++++..
T Consensus 168 ~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~ 207 (248)
T PF06977_consen 168 LFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSS 207 (248)
T ss_dssp --SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEE
T ss_pred ceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEE
Confidence 11234789999997 566667777788999999 55555443
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.05 E-value=0.019 Score=67.85 Aligned_cols=159 Identities=9% Similarity=0.090 Sum_probs=100.8
Q ss_pred EcCCCCEEEEE-ECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe--------------------------
Q 001279 43 FDHIQRLLAIA-TLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-------------------------- 95 (1108)
Q Consensus 43 ~sp~~~~LA~G-s~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-------------------------- 95 (1108)
++|||+.+..- -..+.+.++|.+..++.....=.+.-..++++++++++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 46677655332 333677777777665543322223445667777777776665
Q ss_pred --------------CCCcEEEEEcCC-----CeeeeeecCCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeee
Q 001279 96 --------------NDNEIQVWSLES-----RSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 96 --------------~d~~I~vWd~~s-----~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~ 155 (1108)
.++.|.|.|..+ ..++..+.-......+.++|+++++++++. +.+|.|+++.....-+..
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 235688888887 466667777788899999999999988775 889999998752210000
Q ss_pred eceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC
Q 001279 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
++.-. ......... .......+|.+ +|..+.+-+-|..|..||+..
T Consensus 360 ---~~~~~--~~vvaevev-GlGPLHTaFDg--~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 ---KIKPR--DAVVAEPEL-GLGPLHTAFDG--RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ---cCCcc--ceEEEeecc-CCCcceEEECC--CCCEEEeEeecceeEEEehHH
Confidence 00000 000000001 13356778855 677788899999999999887
No 334
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.02 E-value=0.027 Score=51.12 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=70.9
Q ss_pred ceEEEEc---CCC-CEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001279 38 ASILAFD---HIQ-RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 38 is~la~s---p~~-~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~ 113 (1108)
|++|++. -+| .-|.+|+.|..||+|..+ +.+.+......|+.|+-... .+++.+-.+|+|.||+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence 5566654 332 579999999999999876 45555566678999988877 678888889999999763 33444
Q ss_pred ecCCCCeeEEEEecC---C-CEEEEEeCCCcE
Q 001279 114 LKWESNITAFSVISG---S-HFMYIGDENGLM 141 (1108)
Q Consensus 114 ~~~~~~Itsl~~~~~---~-~~l~vg~~dg~V 141 (1108)
......++++.+..- + +-|++|-.+|.|
T Consensus 77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 444555677665532 2 478999888865
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.99 E-value=0.16 Score=59.27 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=50.8
Q ss_pred EEEcCCCCEEEEEECC----------C-cEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 41 LAFDHIQRLLAIATLD----------G-RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 41 la~sp~~~~LA~Gs~d----------G-~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
+|.+|.|..+|+-..+ . .|+||+..+.......-..+.|.++.|+.+ ..|+.+..||.++++|+....
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce
Confidence 5667777777776544 2 599999988765432222289999999886 678899999999999987444
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.95 E-value=0.048 Score=67.61 Aligned_cols=200 Identities=16% Similarity=0.220 Sum_probs=126.0
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc----CCCeee
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL----ESRSLA 111 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~----~s~~~~ 111 (1108)
..|.++.|--++.-+.+++.+|.|.+-|......-....-...|.+++|+||+..|+-++...++.+-+- -.-+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 4688888888889999999999999998877666555556779999999999999999998888766443 111111
Q ss_pred ----------eeecC-------------------------------CCCeeEEEEecCCCEEEEE-----eCCCcEEEEE
Q 001279 112 ----------CCLKW-------------------------------ESNITAFSVISGSHFMYIG-----DENGLMSVIK 145 (1108)
Q Consensus 112 ----------~~~~~-------------------------------~~~Itsl~~~~~~~~l~vg-----~~dg~V~vw~ 145 (1108)
...+| ...=++++|-.+|+++++. ..-..|+||+
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 00011 1123458899999999983 2235788888
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC---CCeEEEEEccCCeEEEEeCCCccc
Q 001279 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQIIFVGGGKDLQ 222 (1108)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~---dg~V~lWdl~~~~~~~~~~~~~~~ 222 (1108)
-+ |.+..+.- + ...--.+++|-| .|..+++-.. ++.|++|.-.+-+ |..+.
T Consensus 229 rE---g~Lns~se--~-------------~~~l~~~LsWkP--sgs~iA~iq~~~sd~~IvffErNGL~------hg~f~ 282 (1265)
T KOG1920|consen 229 RE---GALNSTSE--P-------------VEGLQHSLSWKP--SGSLIAAIQCKTSDSDIVFFERNGLR------HGEFV 282 (1265)
T ss_pred cc---chhhcccC--c-------------ccccccceeecC--CCCeEeeeeecCCCCcEEEEecCCcc------ccccc
Confidence 65 33332100 0 013346788988 5765555433 3455555432211 11111
Q ss_pred ccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE---EEccCcEEEEecCCC
Q 001279 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV---GYIDGDILLWNTSTT 282 (1108)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s---g~~DG~I~lWd~~~~ 282 (1108)
+.. .....+|..++|. .++..|++ ......|.+|-..+.
T Consensus 283 l~~--------------------p~de~~ve~L~Wn-s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 283 LPF--------------------PLDEKEVEELAWN-SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cCC--------------------cccccchheeeec-CCCCceeeeecccccceEEEEEecCe
Confidence 110 0114459999997 78888877 333444999987654
No 337
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.91 E-value=0.016 Score=69.23 Aligned_cols=181 Identities=17% Similarity=0.146 Sum_probs=120.0
Q ss_pred CCCEEEEEECCCcEEEEecCCcceEEeC-CCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEE
Q 001279 46 IQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAF 123 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~~~~~~~-~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl 123 (1108)
+...+..|+.-..|..+|+.+....... -..+.|+-++ .++++|.++...|+|.+-|..+-+.++++ .|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3456666766666777777665443222 2222455554 35678999999999999999999999988 688888877
Q ss_pred EEecCCCEEEEEeCCC---------cEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 124 SVISGSHFMYIGDENG---------LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 124 ~~~~~~~~l~vg~~dg---------~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.+ .++.|++++-.+ -|+|||+...+ .+. |..++ ....-+.|+|. -..+++
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~--PI~~~---------------~~P~flrf~Ps-l~t~~~ 282 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALS--PIQFP---------------YGPQFLRFHPS-LTTRLA 282 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhh-ccC--Ccccc---------------cCchhhhhccc-ccceEE
Confidence 66 577777776543 45566654311 111 11121 22466789997 566799
Q ss_pred EEECCCeEEEEE---ccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc
Q 001279 195 IAYENALVILWD---VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1108)
Q Consensus 195 ~~~~dg~V~lWd---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D 271 (1108)
+++..|...+-| +.....-....+ |. ...+.+++. +++|+.|+.|..+
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~~v~------------p~----------------~s~i~~fDi-Ssn~~alafgd~~ 333 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVKMVN------------PN----------------GSGISAFDI-SSNGDALAFGDHE 333 (1118)
T ss_pred EEecccceeeccccccCCCccceeEEc------------cC----------------CCcceeEEe-cCCCceEEEeccc
Confidence 999999988877 433322111111 00 334788885 6999999999999
Q ss_pred CcEEEEe
Q 001279 272 GDILLWN 278 (1108)
Q Consensus 272 G~I~lWd 278 (1108)
|.|.+|.
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999998
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0041 Score=71.58 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=76.5
Q ss_pred CCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEE-EEEEcCCC
Q 001279 537 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR-ALQFTSSG 615 (1108)
Q Consensus 537 ~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt-slafspdg 615 (1108)
..|--+.|+|.-.++|++..+|.|.+++++-. -+.++.-|...++ +++|.|||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q--------------------------Rlwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ--------------------------RLWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc--------------------------eeEeccCCCCccceeeeecCCC
Confidence 35788999999999999999999999998743 3455555777777 99999999
Q ss_pred CEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeee
Q 001279 616 AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 658 (1108)
Q Consensus 616 ~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~ 658 (1108)
++||+|..||+|++.|+..+..+... .......|..+-|.+
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 99999999999999999999877431 223556788888863
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.86 E-value=0.041 Score=60.76 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=97.9
Q ss_pred cCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee-----------
Q 001279 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC----------- 112 (1108)
Q Consensus 44 sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~----------- 112 (1108)
...++.|++|+.+| |++++...........+..+|+.|...++-+.|+..+ |+.|.++++..-....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 34689999999999 8999983322222333334599999999888888887 5999999987654433
Q ss_pred ----eecCCCCeeEEE--Eec-CCCEEEEEeCCCcEEEEEEecCCCee--eeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 113 ----CLKWESNITAFS--VIS-GSHFMYIGDENGLMSVIKYDADEGKL--FQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 113 ----~~~~~~~Itsl~--~~~-~~~~l~vg~~dg~V~vw~~d~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
.+.....+..++ -.. ...+|+++... .|.||.+....... ....+.++ +.+.+++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp---------------~~~~~i~ 145 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLP---------------DPPSSIA 145 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcC---------------CCcEEEE
Confidence 222334566666 122 33455555554 78888887632221 11123444 6689999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
|. ++.+++|+.++. .+.|+.++....+.
T Consensus 146 ~~----~~~i~v~~~~~f-~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 146 FL----GNKICVGTSKGF-YLIDLNTGSPSELL 173 (275)
T ss_pred Ee----CCEEEEEeCCce-EEEecCCCCceEEe
Confidence 94 445888887775 78899987665554
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.84 E-value=0.28 Score=56.31 Aligned_cols=101 Identities=10% Similarity=0.037 Sum_probs=69.5
Q ss_pred cCCCCEEEEEEC---------CCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 44 DHIQRLLAIATL---------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 44 sp~~~~LA~Gs~---------dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
|||++++++... .+.+.|||+...+...+......+....|||+|..++-+. ++.|.+++..++......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 688888888432 3779999998887776666678899999999999988886 789999999887544332
Q ss_pred cC------------------CCCeeEEEEecCCCEEEEEeC-CCcEEEEE
Q 001279 115 KW------------------ESNITAFSVISGSHFMYIGDE-NGLMSVIK 145 (1108)
Q Consensus 115 ~~------------------~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~ 145 (1108)
.. -+.-.++-|+|++++|+.... +..|..+.
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 11 123467889999998876643 34444443
No 341
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.84 E-value=0.13 Score=56.02 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=98.8
Q ss_pred EEEcCCCCEEEEEECC-----CcEEEEecC-CcceEEeC-CCCCCEEEEEEeeCCCEEEEEeC-----------------
Q 001279 41 LAFDHIQRLLAIATLD-----GRIKVIGGD-GIEGLLIS-PSQLPYKNLEFLQNQGFLISITN----------------- 96 (1108)
Q Consensus 41 la~sp~~~~LA~Gs~d-----G~I~iw~~~-~~~~~~~~-~h~~~V~~l~fs~d~~~L~S~s~----------------- 96 (1108)
-+|||||++|.+-..| |.|-|||.. +...+-+. .|.-.=..|.+.||+..|+.+-.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 4799999999997665 999999997 44444333 33334456778899877666532
Q ss_pred -CCcEEEEEcCCCeeeeeec-----CCCCeeEEEEecCCCEEEEEeCCCc-------EEEEEEecCCCeeeeeceeeccc
Q 001279 97 -DNEIQVWSLESRSLACCLK-----WESNITAFSVISGSHFMYIGDENGL-------MSVIKYDADEGKLFQLPYNISAD 163 (1108)
Q Consensus 97 -d~~I~vWd~~s~~~~~~~~-----~~~~Itsl~~~~~~~~l~vg~~dg~-------V~vw~~d~~~~~l~~~~~~i~~~ 163 (1108)
+..+.+-|..+++++.... +.-.|..+++.+++..++..-..|. |-+++.+ ..+.. +..+..
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~--~~~p~~ 210 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---GALRL--LPAPEE 210 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC---Cccee--ccCChH
Confidence 1246677888888876643 3346888888888765443322221 1111111 11110 111111
Q ss_pred ccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC-eEEEEEccCCeEEEE
Q 001279 164 ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFV 215 (1108)
Q Consensus 164 ~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-~V~lWdl~~~~~~~~ 215 (1108)
.. ..=.+.+-+|++++ ++..+++.+..| .+.+||..+++++..
T Consensus 211 ~~-------~~l~~Y~gSIa~~~--~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 211 QW-------RRLNGYIGSIAADR--DGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred HH-------HhhCCceEEEEEeC--CCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 00 00126799999966 677777777665 888999999988754
No 342
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.69 E-value=2.7 Score=51.87 Aligned_cols=138 Identities=8% Similarity=0.075 Sum_probs=85.6
Q ss_pred cEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee--cCCCCeeEEEEecCC------
Q 001279 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGS------ 129 (1108)
Q Consensus 58 ~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~--~~~~~Itsl~~~~~~------ 129 (1108)
.||+++-.+ ......-.+.++....+.|..+++.++.++.+...++..+.+.... ..+..|.|+.++|-+
T Consensus 471 ~iRl~ss~~--~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s 548 (1096)
T KOG1897|consen 471 SIRLVSSAG--LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKS 548 (1096)
T ss_pred cEEEEcchh--hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcc
Confidence 466666552 1222223455666666777778888888888888888777633222 355789999999752
Q ss_pred CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC
Q 001279 130 HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 130 ~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
+++++|..+..+.+.-+..+...+.. ..++.... +-.|.-..| ..+..+|+++..||.+.-|.+..
T Consensus 549 ~~~aVG~Ws~~~~~l~~~pd~~~~~~--~~l~~~~i----------PRSIl~~~~--e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 549 RLLAVGLWSDISMILTFLPDLILITH--EQLSGEII----------PRSILLTTF--EGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred eEEEEEeecceEEEEEECCCcceeee--eccCCCcc----------chheeeEEe--eccceEEEEEcCCceEEEEEEEc
Confidence 38999998887777766554322221 11221110 133555555 22467799999999887665554
Q ss_pred Ce
Q 001279 210 AQ 211 (1108)
Q Consensus 210 ~~ 211 (1108)
..
T Consensus 615 ~t 616 (1096)
T KOG1897|consen 615 NT 616 (1096)
T ss_pred cc
Confidence 43
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.68 E-value=0.091 Score=47.82 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=72.9
Q ss_pred EEEEEEee-C---CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeee
Q 001279 79 YKNLEFLQ-N---QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1108)
Q Consensus 79 V~~l~fs~-d---~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~ 154 (1108)
|++|++.. + ...|+.+|.|..|+||+=+ +++..+...+.|++++-... ..++-|..+|+|-+++-.. +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---R-- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---R-- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc---e--
Confidence 67888775 2 2689999999999999864 67788888889999988877 5688899999998876421 1
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEeccc-CCCCC-EEEEEECCCeEE
Q 001279 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHP-NSSGN-RVLIAYENALVI 203 (1108)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P-~~~~~-~ll~~~~dg~V~ 203 (1108)
-+++... ..++++.+.. ..+|. .|++|..+|.|-
T Consensus 74 --lWRiKSK-------------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 --LWRIKSK-------------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --eeeeccC-------------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1445432 3366666533 22222 488999999763
No 344
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.019 Score=70.08 Aligned_cols=93 Identities=23% Similarity=0.422 Sum_probs=68.4
Q ss_pred CeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCE
Q 001279 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1108)
Q Consensus 538 ~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~ 617 (1108)
+++.++-.-.+.+++.|+..|.|-..++..+-. +...-..-.++|++++|+.+|++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~------------------------~~~~ne~v~~~Vtsvafn~dg~~ 144 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLG------------------------PLHQNERVQGPVTSVAFNQDGSL 144 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccc------------------------hhhcCCccCCcceeeEecCCCce
Confidence 334444444567899999999999999887511 00111234789999999999999
Q ss_pred EEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEee
Q 001279 618 LAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1108)
Q Consensus 618 LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs 657 (1108)
++.|-.+|.|.+||+..++++ +.+..|..|++++-+.
T Consensus 145 l~~G~~~G~V~v~D~~~~k~l---~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 145 LLAGLGDGHVTVWDMHRAKIL---KVITEHGAPVTGVIFV 181 (1206)
T ss_pred eccccCCCcEEEEEccCCcce---eeeeecCCccceEEEE
Confidence 999999999999999998877 3444466666666555
No 345
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.62 E-value=0.0058 Score=46.49 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=37.2
Q ss_pred ceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc
Q 001279 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE 68 (1108)
Q Consensus 26 ~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~ 68 (1108)
++...+...+..|.+++|+|...+||+|+.+|.|.||.++...
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 4556677888999999999999999999999999999886543
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.62 E-value=0.006 Score=43.23 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=33.5
Q ss_pred EEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001279 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1108)
Q Consensus 595 ~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd 631 (1108)
+...+..|...|++++|++++.++++|+.||.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 347
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.62 E-value=0.022 Score=68.21 Aligned_cols=150 Identities=10% Similarity=0.151 Sum_probs=109.8
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeC---------CCcEEEEEcCC
Q 001279 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN---------DNEIQVWSLES 107 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~---------d~~I~vWd~~s 107 (1108)
|+.|.+ ++++|.+|...|.|.+-|....+.. ....|++.|+.+.. .|..|++|+. |..|+|||++.
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh
Confidence 666666 5899999999999999999776665 67789998887655 4667999885 55699999998
Q ss_pred CeeeeeecCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 108 RSLACCLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 108 ~~~~~~~~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
-+.+.-++.+....-+.|.|. ...+++.+..|...+.+-.........+.+..+. . ..+.++.+++
T Consensus 256 mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~------------s~i~~fDiSs 322 (1118)
T KOG1275|consen 256 MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-G------------SGISAFDISS 322 (1118)
T ss_pred hhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-C------------CcceeEEecC
Confidence 888777766655566777776 4688999999988887722211111111011121 1 3488888877
Q ss_pred CCCCCEEEEEECCCeEEEEE
Q 001279 187 NSSGNRVLIAYENALVILWD 206 (1108)
Q Consensus 187 ~~~~~~ll~~~~dg~V~lWd 206 (1108)
.++.++.+-.+|.|.+|.
T Consensus 323 --n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 323 --NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred --CCceEEEecccCcEeeec
Confidence 677799999999999998
No 348
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.58 E-value=1.3 Score=48.88 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=41.3
Q ss_pred eEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEc-CCccEEEEeCCCcce
Q 001279 626 RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-KDAKISIVGGSSENM 704 (1108)
Q Consensus 626 ~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s-~Dg~v~v~d~~~g~~ 704 (1108)
.|+++|+.+++.+.+... ..++.+|+.+.. +..+|++.+ .++.|.|+|..+|++
T Consensus 270 eVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd---------------------~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL----EHPIDSIAVSQD---------------------DKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEETTTTEEEEEEEE----EEEESEEEEESS---------------------SS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEEEEECCCCeEEEEEeC----CCccceEEEccC---------------------CCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 599999999998876653 345778888832 356787664 589999999999998
Q ss_pred ecC
Q 001279 705 ISS 707 (1108)
Q Consensus 705 l~~ 707 (1108)
+.+
T Consensus 325 ~~~ 327 (342)
T PF06433_consen 325 VRS 327 (342)
T ss_dssp EEE
T ss_pred Eee
Confidence 764
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.47 E-value=1.4 Score=52.91 Aligned_cols=69 Identities=10% Similarity=-0.025 Sum_probs=43.1
Q ss_pred CCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCc
Q 001279 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1108)
Q Consensus 623 ~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g 702 (1108)
.+|.|.-+|..+++++++.... .+.... .+...... .+..-.+.+|++++.||.|+.+|..+|
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~-~~~~~~---~~g~~~~~-------------~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREG-TIRDSW---NIGFPHWG-------------GSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCC-cccccc---ccCCcccC-------------cceEecCCeEEEECCCCeEEEEECCCC
Confidence 4688889999999998876542 111100 00000000 000012678999999999999999999
Q ss_pred ceecCC
Q 001279 703 NMISSS 708 (1108)
Q Consensus 703 ~~l~~~ 708 (1108)
+++-+.
T Consensus 427 ~~lW~~ 432 (488)
T cd00216 427 KELWKF 432 (488)
T ss_pred ceeeEE
Confidence 988554
No 350
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.45 E-value=2.6 Score=48.78 Aligned_cols=289 Identities=12% Similarity=0.148 Sum_probs=155.1
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEE---e--CCCeEEEEecCceEEEEEecC
Q 001279 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC---F--INSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 493 ~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs---~--d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
.+...|+.|+..|.+||++........... ..+..+ ..||-.|+.- + +...||+- .-..+.||.+..
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~l----llE~~l---~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~ 106 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDL----LLETQL---KDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSL 106 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccE----EEEEec---CCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEe
Confidence 345689999999999999986544321100 001112 2367666543 2 33456654 456888998844
Q ss_pred CCCCccccccccCccceeecccCCcceEEEEEee-cCcCEEEEEEcCC-----CCEEEEEeCCCeEEEEEccCceEEEEe
Q 001279 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSS-----GAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1108)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vtslafspd-----g~~LavGs~dG~V~vwd~~~~~~~~~~ 641 (1108)
.... ...+..+++...+.. .+.....+++-|- ..++++=+.||.+.+++-+.-......
T Consensus 107 ~~g~---------------~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l 171 (418)
T PF14727_consen 107 VDGT---------------VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL 171 (418)
T ss_pred cCCC---------------cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc
Confidence 3211 001112222222222 2344455555443 268999999999999998876543221
Q ss_pred ecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCC------------
Q 001279 642 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSP------------ 709 (1108)
Q Consensus 642 ~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~------------ 709 (1108)
.. .-+++|+ .|.+ ..+.+++++.+..|.-|.... |....
T Consensus 172 p~-~llPgPl---~Y~~----------------------~tDsfvt~sss~~l~~Yky~~---La~~s~~~~~~~~~~~~ 222 (418)
T PF14727_consen 172 PD-FLLPGPL---CYCP----------------------RTDSFVTASSSWTLECYKYQD---LASASEASSRQSGTEQD 222 (418)
T ss_pred CC-CCCCcCe---EEee----------------------cCCEEEEecCceeEEEecHHH---hhhcccccccccccccc
Confidence 11 1245543 3442 245588888888887776321 11100
Q ss_pred ----------CcccccceeeEEEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCC
Q 001279 710 ----------WHLKKKVIAISMEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESS 779 (1108)
Q Consensus 710 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1108)
+.-.-+..++.|.++ ....
T Consensus 223 ~~~~k~l~~dWs~nlGE~~l~i~v~-------------------------------------------------~~~~-- 251 (418)
T PF14727_consen 223 ISSGKKLNPDWSFNLGEQALDIQVV-------------------------------------------------RFSS-- 251 (418)
T ss_pred ccccccccceeEEECCceeEEEEEE-------------------------------------------------EcCC--
Confidence 000000011111111 0111
Q ss_pred CCcEEEEEecCeeEEEecccccccccceeeeecCCCcceeeeee--ecCCc-eeEEEEEeecCcEEEeecCCcccccccc
Q 001279 780 NDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTI--EKDEK-VCGLLLLFQTGAVQIRSLPDLELVMESS 856 (1108)
Q Consensus 780 ~~~~~~~c~e~~~~v~sl~~~~~g~~~~~~k~~~~~~~~~~~~~--~~~~~-~~~l~~~~~~G~i~i~slp~l~~~~~~~ 856 (1108)
..+.+++.+|..+.+++.+. .-+..+|......|+-.-.. ...++ ...++....+|+|+||.=-.|.
T Consensus 252 ~~~~IvvLger~Lf~l~~~G----~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~------ 321 (418)
T PF14727_consen 252 SESDIVVLGERSLFCLKDNG----SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV------ 321 (418)
T ss_pred CCceEEEEecceEEEEcCCC----eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE------
Confidence 15688888888888886654 23334444444444332222 11222 2348888899999999644443
Q ss_pred ccceeeceecCcc----cccccc-C-CCcEEEEcCceeEEEEeecCCCce
Q 001279 857 LMSILRWNFKANM----DKTISA-D-NGQITLANGSEVAFVNLLAGENEF 900 (1108)
Q Consensus 857 ~~~~~~~~~~~~~----~~~~~~-s-~Gq~~l~~~~e~~~~~~~~~~~~~ 900 (1108)
|+-+... +..-.| . +|-++..+.++..-++.+.++-..
T Consensus 322 ------WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 322 ------WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred ------EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 6654433 332222 3 788888888887778888876643
No 351
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.0018 Score=63.29 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001279 1035 KPRLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1107 (1108)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 1107 (1108)
.|...++..+|+. -+-+-+++-++=+|+.+||||||-|=++||-|++++.+|-.-++.|.++ .|||
T Consensus 121 ~p~id~lskvkaq---v~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~----mw~~ 186 (217)
T KOG0859|consen 121 HPEISKLAKVKAQ---VTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRK----MWFQ 186 (217)
T ss_pred CcchhHHHHHHHH---HHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHH----HHHh
Confidence 3556667777766 2234588999999999999999999999999999999999999888776 5886
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.012 Score=67.82 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=80.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEE-EEEEeeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYK-NLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~-~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
..|..+--+.|+|.-.++|+++.+|.|.+.-++...+....-|..+++ +++|-|||..|+.+=.||+|++-|++++..+
T Consensus 18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 456778889999999999999999999998888555545554666777 9999999999999999999999999999988
Q ss_pred ee--ecCCCCeeEEEEe
Q 001279 112 CC--LKWESNITAFSVI 126 (1108)
Q Consensus 112 ~~--~~~~~~Itsl~~~ 126 (1108)
.. +.....|+++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 87 5667788888886
No 353
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.38 Score=51.30 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=119.8
Q ss_pred CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCC--CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001279 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~--~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~ 152 (1108)
-+..|++|.|+|+.+.|+++.....-.||=-..|+++.++... ....++.+..++++.++--.+..+++..++.++..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 3445999999999999999999999999988899999888544 45567788888888888888999999999876555
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe-EEEEeCCCcccccccccCCC
Q 001279 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSP 231 (1108)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (1108)
+....++++-. ..........+++|.| ...+|+.+=...-+.||.+.... .... |.
T Consensus 164 ~~~~~~~i~L~-------~~~k~N~GfEGlA~d~--~~~~l~~aKEr~P~~I~~~~~~~~~l~~--~~------------ 220 (316)
T COG3204 164 ISAKVQKIPLG-------TTNKKNKGFEGLAWDP--VDHRLFVAKERNPIGIFEVTQSPSSLSV--HA------------ 220 (316)
T ss_pred EeccceEEecc-------ccCCCCcCceeeecCC--CCceEEEEEccCCcEEEEEecCCccccc--cc------------
Confidence 54332333311 1112235688999988 45568888888877777665332 1111 10
Q ss_pred CCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
...+....+ .--..|.++.|..+.+..|+-+..++.|.-.|...
T Consensus 221 ~~~~~~~~~------~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 221 SLDPTADRD------LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccCcccccc------eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 000000000 00345777887666778888888888888777654
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.36 E-value=0.062 Score=62.54 Aligned_cols=154 Identities=15% Similarity=0.092 Sum_probs=98.0
Q ss_pred EEEEcCCCCEEEEE---ECC-CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC-CCc--EEEEEcCCCeeee
Q 001279 40 ILAFDHIQRLLAIA---TLD-GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNE--IQVWSLESRSLAC 112 (1108)
Q Consensus 40 ~la~sp~~~~LA~G---s~d-G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~--I~vWd~~s~~~~~ 112 (1108)
.-+|+|+++.++.- ... .+|.+++++...........+.-..-+|+|||.+|+-+.. |+. |.+.|+.++....
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~ 276 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR 276 (425)
T ss_pred ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence 35678888876654 223 4688888876555444445556667889999988877664 444 7778888887544
Q ss_pred eecCCCCeeEEEEecCCCEEE-EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 113 CLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 113 ~~~~~~~Itsl~~~~~~~~l~-vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
.....+.-+.=+|+|++++++ +.+..|.-.||.++.+.+...+. +.... ... .-.|+| +|+
T Consensus 277 Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri--T~~~~-------------~~~-~p~~Sp--dG~ 338 (425)
T COG0823 277 LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL--TFSGG-------------GNS-NPVWSP--DGD 338 (425)
T ss_pred cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe--eccCC-------------CCc-CccCCC--CCC
Confidence 334444444668899998665 55678888889888776655432 22211 111 445666 788
Q ss_pred EEEEEEC-CCe--EEEEEccCCe
Q 001279 192 RVLIAYE-NAL--VILWDVSEAQ 211 (1108)
Q Consensus 192 ~ll~~~~-dg~--V~lWdl~~~~ 211 (1108)
+++.... +|. |.+.|+.++.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCC
Confidence 7776664 343 5666665554
No 355
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.085 Score=64.71 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=75.5
Q ss_pred CCCEEEEEECCCcEEEEecCCcce-EEeCC-CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCee-
Q 001279 46 IQRLLAIATLDGRIKVIGGDGIEG-LLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNIT- 121 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~-h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~It- 121 (1108)
.+.++|+|+..|.|-.+|..+.-. +.... -++||++++|+.+|.+|+.|-.+|.|.+||...+..++.+ .+..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 467899999999999988866422 22222 3569999999999999999999999999999998887766 3333333
Q ss_pred --EEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 122 --AFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 122 --sl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
.+-+..++..+++++..|. +|.+.-
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 3344455567899999995 577653
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.23 E-value=0.4 Score=51.31 Aligned_cols=175 Identities=17% Similarity=0.290 Sum_probs=96.1
Q ss_pred CCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCeeeeeecCC--CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001279 76 QLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~~~~~~~~~--~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~ 152 (1108)
...++.|.|.|+.+.|+++.. .+.|...+. +++++..+... +..-.+++..++.++++--.++.+.+..++.....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 345999999999888888876 566777776 47777777443 56888888877877776666898988888654333
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC---CeEEEEeCCCcccccccccC
Q 001279 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---AQIIFVGGGKDLQLKDGVVD 229 (1108)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~---~~~~~~~~~~~~~~~~~~~~ 229 (1108)
+.... +... ..+.+..+...+-+++|.| .+++|+++-...-..||.+.. ...........+.
T Consensus 100 ~~~~~--~~~~----~l~~~~~~N~G~EGla~D~--~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~------- 164 (248)
T PF06977_consen 100 LDRAD--VQKI----SLGFPNKGNKGFEGLAYDP--KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD------- 164 (248)
T ss_dssp --EEE--EEEE----E---S---SS--EEEEEET--TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-------
T ss_pred cchhh--ceEE----ecccccCCCcceEEEEEcC--CCCEEEEEeCCCChhhEEEccccCccceeeccccccc-------
Confidence 32110 0000 1112222335699999988 466688888887777777665 2111111000000
Q ss_pred CCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
........+.++.+....|..++-...+..|..+|..
T Consensus 165 --------------~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 165 --------------DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp ---------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred --------------cccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 0001144577888775566677777778888888843
No 357
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.21 E-value=5 Score=49.66 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=71.6
Q ss_pred CeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCC--
Q 001279 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-- 615 (1108)
Q Consensus 538 ~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg-- 615 (1108)
.++....+-+...++.++.++.+....+....- ....-......|.|+.++|-|
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l------------------------~e~~~~~~e~evaCLDisp~~d~ 544 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGL------------------------REVSHKEFEYEVACLDISPLGDA 544 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccce------------------------eeeeeheecceeEEEecccCCCC
Confidence 455555555556677777776666666555410 001112346789999999853
Q ss_pred ----CEEEEEeCCCeEEEEEccCceEEEEeecCC--CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEc
Q 001279 616 ----AKLAVGFECGRVAVLDMNLLSVLFFTDDIS--GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 689 (1108)
Q Consensus 616 ----~~LavGs~dG~V~vwd~~~~~~~~~~~~~~--~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s 689 (1108)
+++|+|..+..+.+.-......+.....+. ..+..|.-..|. -+..+|+++.
T Consensus 545 ~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e----------------------~d~~yLlval 602 (1096)
T KOG1897|consen 545 PNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFE----------------------GDIHYLLVAL 602 (1096)
T ss_pred CCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEee----------------------ccceEEEEEc
Confidence 489999998888777654433332222222 233444444444 2368899999
Q ss_pred CCccEEEE--eCCCcce
Q 001279 690 KDAKISIV--GGSSENM 704 (1108)
Q Consensus 690 ~Dg~v~v~--d~~~g~~ 704 (1108)
.||.++.+ |..+|.+
T Consensus 603 gdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 603 GDGALLYFVLDINTGQL 619 (1096)
T ss_pred CCceEEEEEEEcccceE
Confidence 99998654 4545443
No 358
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=0.0036 Score=73.89 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=98.0
Q ss_pred ccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEE
Q 001279 474 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1108)
Q Consensus 474 ~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Las 553 (1108)
..|.....+.....+++++-+.+.|+.|+-.|.|+++++.++... -....|.++||-+.=+.||.++.+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----------~s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----------ESVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----------ccccccccccccccccCCcceeee
Confidence 455555555677788899999999999999999999999998865 456789999999999999988776
Q ss_pred EecC-c-eEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001279 554 GNEF-G-LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1108)
Q Consensus 554 g~~d-G-~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd 631 (1108)
.+.. . ...+|++...- +...+| ..-.++.|+...+.-++|+....+.|||
T Consensus 1161 sss~S~PlsaLW~~~s~~------------------------~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YD 1212 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTG------------------------GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYD 1212 (1516)
T ss_pred eccccCchHHHhcccccc------------------------Cccccc----cccceeehhhhHHHHHhcccccceEEEe
Confidence 6543 3 57789887631 122333 2346788998887888888888899999
Q ss_pred ccCceEE
Q 001279 632 MNLLSVL 638 (1108)
Q Consensus 632 ~~~~~~~ 638 (1108)
++++.++
T Consensus 1213 vqT~~~l 1219 (1516)
T KOG1832|consen 1213 VQTCSPL 1219 (1516)
T ss_pred cccCcHH
Confidence 9998776
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.08 E-value=4.9 Score=48.31 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=66.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCC-------eeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeecee
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWESN-------ITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYN 159 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~-------Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~ 159 (1108)
+..++.++.++.|.-.|..+++.+........ +..--..-.+ ..+++++.+|.|+-+ |..++++.-. +.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~Al--D~~TG~~~W~-~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVAL--DAETGKQVWK-FG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEE--ECCCCCEeee-ec
Confidence 35677788889999999999998877643321 1100001123 788899999966554 4555666521 22
Q ss_pred ecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE---------CCCeEEEEEccCCeEEEEeC
Q 001279 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY---------ENALVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~---------~dg~V~lWdl~~~~~~~~~~ 217 (1108)
...+. ..-..+.-.|.-.+.++++++ .+|.|.-+|..+++.++.+.
T Consensus 138 ~~~~~------------~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 138 NNDQV------------PPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCCCc------------CcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 21110 000112222322234455554 36788999999999887653
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.99 E-value=0.0021 Score=73.78 Aligned_cols=198 Identities=14% Similarity=0.208 Sum_probs=122.4
Q ss_pred ceEEEE--cCCCCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEee-CCCEEEEEeC----CCcEEEEEcCC
Q 001279 38 ASILAF--DHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQ-NQGFLISITN----DNEIQVWSLES 107 (1108)
Q Consensus 38 is~la~--sp~~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~----d~~I~vWd~~s 107 (1108)
+.|++. +.++-++|+|..+|.|-+-..... ......+|..+.++++|.+ |...||.+-. |..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 455554 455679999999999998776332 2345667788999999988 5566666642 55699999998
Q ss_pred C--eeeeee----cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001279 108 R--SLACCL----KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 108 ~--~~~~~~----~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
+ .+.... .......+++|..+.+++.+|.....+.+.++........ .+.. ..|.+
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----svnT--------------k~vqG 200 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----SVNT--------------KYVQG 200 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----hhhh--------------hhccc
Confidence 8 222221 1223456788888888899998888888777652110000 0111 23555
Q ss_pred EecccCCCCCEEEEEECCCeEEEEEc-cCCe-EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeec
Q 001279 182 VLPHPNSSGNRVLIAYENALVILWDV-SEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~lWdl-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1108)
+...|- .+. .++.+.||.|.+||- ..-+ .+....+ .+-...+.+..++|.
T Consensus 201 ~tVdp~-~~n-Y~cs~~dg~iAiwD~~rnienpl~~i~~-------------------------~~N~~~~~l~~~ayc- 252 (783)
T KOG1008|consen 201 ITVDPF-SPN-YFCSNSDGDIAIWDTYRNIENPLQIILR-------------------------NENKKPKQLFALAYC- 252 (783)
T ss_pred ceecCC-CCC-ceeccccCceeeccchhhhccHHHHHhh-------------------------CCCCcccceeeEEec-
Confidence 555553 344 677788999999993 3221 1111111 001114568899986
Q ss_pred CCC-CEEEEEE-ccCcEEEEecCC
Q 001279 260 SSG-SILAVGY-IDGDILLWNTST 281 (1108)
Q Consensus 260 pdg-~~l~sg~-~DG~I~lWd~~~ 281 (1108)
|.. ..+++.. ..++|+++++..
T Consensus 253 Ptrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCCcchhhhhccCcceEEEecccc
Confidence 543 2344444 457899998864
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.86 E-value=0.48 Score=55.47 Aligned_cols=56 Identities=11% Similarity=0.226 Sum_probs=38.8
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 91 LISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 91 L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
|+....++.|.+||+++++.+....... |..+.|++++.+++..+.+ +++|++++.
T Consensus 119 LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 119 LLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred EEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 4444445689999999999999998765 8999999999999999866 578988875
No 362
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.24 Score=59.50 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=83.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCC-----cceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDG-----IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~-----~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
|..+++++++.+-+.+|+|-.||.|..+..+- ...........||+.|.|..++.-++-+.+-..|.++.+..+.
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 56688999999999999999999999997742 2333555667799999999988775555567889999998666
Q ss_pred e-eeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 110 L-ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 110 ~-~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
+ +..+ .+...+.|-++++....++++...+ +++++.+
T Consensus 205 p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd 243 (933)
T KOG2114|consen 205 PSLKVLDNNGISLNCSSFSDGTYQFICAGSEF-LYFYDSD 243 (933)
T ss_pred cceeeeccCCccceeeecCCCCccEEEecCce-EEEEcCC
Confidence 3 3334 3456789999998887666665554 4555444
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.71 E-value=0.38 Score=58.50 Aligned_cols=153 Identities=9% Similarity=0.114 Sum_probs=89.4
Q ss_pred CCceEEEEcCCCCEEEEEE------CCC--cEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC----------
Q 001279 36 ATASILAFDHIQRLLAIAT------LDG--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---------- 97 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs------~dG--~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---------- 97 (1108)
..++..+++|+++.+|.-. .|. .|.+++..+....+..+. ..+.-.|+|||..|.+++..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4578899999999988766 244 445545433332233332 38888999998888777643
Q ss_pred --CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec-CCCeeee-eceeecccccccccCCCC
Q 001279 98 --NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDA-DEGKLFQ-LPYNISADALSEKAGFPL 173 (1108)
Q Consensus 98 --~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~-~~~~l~~-~~~~i~~~~~~~~~~~~~ 173 (1108)
+.|.+.++..++... ...+.|+.+.|+|++.+++.-. +|.|+|--+.. ..|.... .+..+...
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~---------- 494 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG---------- 494 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc----------
Confidence 223333444443322 3456799999999999888766 46666633332 3343111 01111110
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEc
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 207 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl 207 (1108)
-...+.++.|.+ ++. |+++..++...+|.+
T Consensus 495 -l~~~~~~l~W~~--~~~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 495 -LGDTAVSLDWRT--GDS-LVVGRSDPEHPVWYV 524 (591)
T ss_pred -cCCccccceEec--CCE-EEEEecCCCCceEEE
Confidence 013468889955 666 667766654445543
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.71 E-value=0.12 Score=60.47 Aligned_cols=142 Identities=10% Similarity=0.160 Sum_probs=74.8
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
.-.+..+.++|+++++++++ ||...||......-. ..+.-....|++. +..+.....++|.|+.--+......+
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k----~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK----AFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE----EEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT---
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc----ccCceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEE
Confidence 33478899999999999965 677777773222111 1234556778884 56777777888999633233333334
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
..+..+..+-. |.+|.+.+.+ .|.+||++. ++++.. +.- .+|..|.|++ ++++++
T Consensus 106 ~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~--~~~i~~---i~v--------------~~vk~V~Ws~--~g~~va 160 (443)
T PF04053_consen 106 KLPFSVEKIFG---GNLLGVKSSD-FICFYDWET--GKLIRR---IDV--------------SAVKYVIWSD--DGELVA 160 (443)
T ss_dssp --SS-EEEEE----SSSEEEEETT-EEEEE-TTT----EEEE---ESS---------------E-EEEEE-T--TSSEEE
T ss_pred cCCcccceEEc---CcEEEEECCC-CEEEEEhhH--cceeeE---Eec--------------CCCcEEEEEC--CCCEEE
Confidence 33333443333 7777776555 677777664 555532 442 3389999977 788788
Q ss_pred EEECCCeEEEEEcc
Q 001279 195 IAYENALVILWDVS 208 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~ 208 (1108)
..+.+.. .|++..
T Consensus 161 l~t~~~i-~il~~~ 173 (443)
T PF04053_consen 161 LVTKDSI-YILKYN 173 (443)
T ss_dssp EE-S-SE-EEEEE-
T ss_pred EEeCCeE-EEEEec
Confidence 8877654 455433
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.70 E-value=0.23 Score=61.24 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=90.3
Q ss_pred eCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecC-------CCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001279 95 TNDNEIQVWSLESRSLACCLKWESNITAFSVISG-------SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1108)
Q Consensus 95 s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~-------~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1108)
...+.|.--|++.|+++........+.-..+.|+ ....++|-.+..++.||......+++.. ..+..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~----~~k~Y-- 574 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS----QSKQY-- 574 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec----ccccc--
Confidence 4567899999999999988865544434444443 2356788888888888866544444421 11110
Q ss_pred ccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCC
Q 001279 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1108)
.......|++- +.+|. |++|+.+|-||+||--..+....+ +.
T Consensus 575 ------~~~~~Fs~~aT--t~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~l---------------------------- 617 (794)
T PF08553_consen 575 ------SSKNNFSCFAT--TEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGL---------------------------- 617 (794)
T ss_pred ------ccCCCceEEEe--cCCce-EEEEeCCCcEEeecccchhhhhcCCCC----------------------------
Confidence 11144677777 44676 999999999999994332222221 11
Q ss_pred CCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 247 PEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
..+|+.++ .+.||++|++.|. -.|.+++..
T Consensus 618 --G~pI~~iD-vt~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 618 --GDPIIGID-VTADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred --CCCeeEEE-ecCCCcEEEEeec-ceEEEEEEe
Confidence 46899999 5699999887765 467777753
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.66 E-value=0.78 Score=51.86 Aligned_cols=120 Identities=13% Similarity=0.185 Sum_probs=79.8
Q ss_pred ccceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCC--CEEEEEEeeCCCEEEEEeCCCcE
Q 001279 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQL--PYKNLEFLQNQGFLISITNDNEI 100 (1108)
Q Consensus 24 ~~~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~--~V~~l~fs~d~~~L~S~s~d~~I 100 (1108)
..++....+-+++.|++++.- +..|++|. ++.|++|+++..+ ......+.. .++++... +.+++.+..-..|
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred eEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCE
Confidence 456666777788899888765 44566665 5899999997666 554444434 55555554 5588888888888
Q ss_pred EEEEcCC--Ceeeeee--cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 101 QVWSLES--RSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 101 ~vWd~~s--~~~~~~~--~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
.++.++. .++...- ..+..++++.+.++++.+++++.+|++.++.++.
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 8775543 3232222 2345689999986667999999999999999874
No 367
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.40 E-value=0.45 Score=55.46 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=79.6
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeC---C-CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEE-EEeCCCcEEEEE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITN---D-NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIK 145 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~---d-~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~-vg~~dg~V~vw~ 145 (1108)
........+..-.|+|++..++-.+- . ..|.++|+.+++....+...+.-..-+|+|++++++ +...||...||-
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 33334446666778888776655532 2 469999999998777777777777789999997665 556789888888
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-CC--eEEEEEccCCeE
Q 001279 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEAQI 212 (1108)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg--~V~lWdl~~~~~ 212 (1108)
+|...+.+.+ +.... +.-+.=.|+| +|+.++-.+. .| .|.+.|.+.+..
T Consensus 267 ~dl~~~~~~~----Lt~~~------------gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 267 MDLDGKNLPR----LTNGF------------GINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred EcCCCCccee----cccCC------------ccccCccCCC--CCCEEEEEeCCCCCcceEEECCCCCce
Confidence 8876555443 22111 1112335767 6776655444 44 556666776654
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.23 E-value=2 Score=50.11 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=29.9
Q ss_pred EEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCce
Q 001279 596 RAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS 636 (1108)
Q Consensus 596 ~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~ 636 (1108)
+..+....+.|.++.|+.+.++ ++-..||.++++|+.+..
T Consensus 73 l~~i~w~~~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 73 LSSIPWDSGRIVGMGWTDDEEL-VVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred eEEEEECCCCEEEEEECCCCeE-EEEEcCCEEEEEeCCCce
Confidence 3444444489999999987655 455689999999998665
No 369
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.19 E-value=0.052 Score=41.36 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=30.8
Q ss_pred ecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCc
Q 001279 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 601 ~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~ 635 (1108)
.....|.+++|||...+||+|+.+|.|.|+.+...
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 34667999999999999999999999999998543
No 370
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.11 E-value=0.042 Score=38.56 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=29.7
Q ss_pred eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001279 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd 104 (1108)
...|...|.+++|.+++.++++++.|+.+++||
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 346788999999999989999999999999996
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=1.4 Score=48.97 Aligned_cols=195 Identities=9% Similarity=0.024 Sum_probs=103.6
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeC--CC---CCCEEEEEEeeCCCEEEEEeC-----C--
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLIS--PS---QLPYKNLEFLQNQGFLISITN-----D-- 97 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~--~h---~~~V~~l~fs~d~~~L~S~s~-----d-- 97 (1108)
-+..|+.++++..-..+..|+++... +++++.+.... ..+. .. ...-..+...|+|.+.+.... .
T Consensus 61 ~~~~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~ 138 (307)
T COG3386 61 VFPSPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSE 138 (307)
T ss_pred EEECCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccc
Confidence 34567777776655555555555433 55555543322 2222 11 124567778888776666544 1
Q ss_pred --CcEEEEEcC-CCeeeeeecC-CCCeeEEEEecCCCEEEEEeCC-CcEEEEEEecCCCeeeee-c-eeecccccccccC
Q 001279 98 --NEIQVWSLE-SRSLACCLKW-ESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQL-P-YNISADALSEKAG 170 (1108)
Q Consensus 98 --~~I~vWd~~-s~~~~~~~~~-~~~Itsl~~~~~~~~l~vg~~d-g~V~vw~~d~~~~~l~~~-~-~~i~~~~~~~~~~ 170 (1108)
..-.||-+. .+........ -..-+.++|+|+++.|++.+.. +.|+-++++..++..... . +.+..
T Consensus 139 ~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~-------- 210 (307)
T COG3386 139 ERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE-------- 210 (307)
T ss_pred cCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC--------
Confidence 112355555 3444443322 3455689999999999999875 544444444211111100 0 00110
Q ss_pred CCCCCCCCeEEEecccCCCCCEEEEEECCC-eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCC
Q 001279 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1108)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1108)
..+..-+++. ..+|.+-+++..+| .|.+|+.+ ++.+..... + .
T Consensus 211 ----~~G~PDG~~v--DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---------P--------------------~ 254 (307)
T COG3386 211 ----EPGLPDGMAV--DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---------P--------------------V 254 (307)
T ss_pred ----CCCCCCceEE--eCCCCEEEecccCCceEEEECCC-CcEEEEEEC---------C--------------------C
Confidence 1122333333 34677443555554 88899988 554433311 1 3
Q ss_pred CceeEEEeecCCCCEEEEEEcc
Q 001279 250 KEISALCWASSSGSILAVGYID 271 (1108)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg~~D 271 (1108)
..++++||..++.+.|+..+..
T Consensus 255 ~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCCccceEeCCCcCEEEEEecC
Confidence 6789999888888877666543
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.90 E-value=2.2 Score=53.06 Aligned_cols=149 Identities=14% Similarity=0.115 Sum_probs=91.7
Q ss_pred cCCCCcEEEEE-ecCCcEEEEeCCCCceeeEeeeccccceeeccCCC-CCeEEEEEEeCC-------CeEEEEecCceEE
Q 001279 491 CHSVDRVYLAG-YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR-APVSTLSFCFIN-------SSLAVGNEFGLVY 561 (1108)
Q Consensus 491 ~s~~~~llatg-s~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~-~~Vt~lafs~d~-------~~Lasg~~dG~V~ 561 (1108)
...+.++|+.- .....|+--|+..+.... .+.-|. .+| ..|.|+. .--+.|-.+..+.
T Consensus 489 ~~~d~~mil~~~~~~~~ly~mDLe~GKVV~-----------eW~~~~~~~v--~~~~p~~K~aqlt~e~tflGls~n~lf 555 (794)
T PF08553_consen 489 HDQDRNMILLDPNNPNKLYKMDLERGKVVE-----------EWKVHDDIPV--VDIAPDSKFAQLTNEQTFLGLSDNSLF 555 (794)
T ss_pred hccccceEeecCCCCCceEEEecCCCcEEE-----------EeecCCCcce--eEecccccccccCCCceEEEECCCceE
Confidence 34455565554 345668888888888552 233332 223 4444432 2335566677788
Q ss_pred EEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEe
Q 001279 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1108)
Q Consensus 562 lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~ 641 (1108)
.||.+-..+. .+ ... ...+ ......+|++-+.+| +||+|+.+|.||+||-.+....
T Consensus 556 riDpR~~~~k----~v-----------~~~----~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AK--- 611 (794)
T PF08553_consen 556 RIDPRLSGNK----LV-----------DSQ----SKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAK--- 611 (794)
T ss_pred EeccCCCCCc----ee-----------ecc----cccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhh---
Confidence 8887754211 00 000 0011 235568888888888 8999999999999996553322
Q ss_pred ecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 642 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 642 ~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
..+++...||++|..+ .+|.+|+ ++.+..|.++|.
T Consensus 612 T~lp~lG~pI~~iDvt----------------------~DGkwil-aTc~tyLlLi~t 646 (794)
T PF08553_consen 612 TALPGLGDPIIGIDVT----------------------ADGKWIL-ATCKTYLLLIDT 646 (794)
T ss_pred hcCCCCCCCeeEEEec----------------------CCCcEEE-EeecceEEEEEE
Confidence 3467888999999999 5577765 445566677775
No 373
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=4.6 Score=46.78 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=128.4
Q ss_pred CCceEEEEcCCCCE-EEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC---CCcEEEEEcCCCeee
Q 001279 36 ATASILAFDHIQRL-LAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLA 111 (1108)
Q Consensus 36 ~~is~la~sp~~~~-LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~---d~~I~vWd~~s~~~~ 111 (1108)
.....+++++.+.. .+....++.|.+.|.....+.....-...-..+.|++++..+..+.. ++++.+-|-.++.++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 44567888988884 44555569999999765555433322225678899999888777765 688999999999888
Q ss_pred eeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 112 CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 112 ~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
....-...-..++++|+++.+++.. .++.|.+.+... ..+.+ +.... ..........+.+.| ++
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~--~~v~~-~~~~~----------~~~~~~~P~~i~v~~--~g 218 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG--NSVVR-GSVGS----------LVGVGTGPAGIAVDP--DG 218 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC--cceec-ccccc----------ccccCCCCceEEECC--CC
Confidence 7754332238999999999888887 577777777442 22221 00000 000113456777766 67
Q ss_pred CEEEEEECC---CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE
Q 001279 191 NRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1108)
Q Consensus 191 ~~ll~~~~d---g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1108)
.++.+.... +.+.+.|..++........ .+. . ....+. ..|+|..+.+
T Consensus 219 ~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~-------------~~~--------------~-~~~~v~-~~p~g~~~yv 269 (381)
T COG3391 219 NRVYVANDGSGSNNVLKIDTATGNVTATDLP-------------VGS--------------G-APRGVA-VDPAGKAAYV 269 (381)
T ss_pred CEEEEEeccCCCceEEEEeCCCceEEEeccc-------------ccc--------------C-CCCcee-ECCCCCEEEE
Confidence 755555444 4888888888877654211 000 0 122233 3599999888
Q ss_pred EEcc-CcEEEEecCCC
Q 001279 268 GYID-GDILLWNTSTT 282 (1108)
Q Consensus 268 g~~D-G~I~lWd~~~~ 282 (1108)
.... +.+.+-|..+.
T Consensus 270 ~~~~~~~V~vid~~~~ 285 (381)
T COG3391 270 ANSQGGTVSVIDGATD 285 (381)
T ss_pred EecCCCeEEEEeCCCC
Confidence 8555 77777776654
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.68 E-value=0.0094 Score=68.59 Aligned_cols=163 Identities=12% Similarity=0.181 Sum_probs=106.8
Q ss_pred CCCCCceEEEEcC-CCCEEEEEE----CCCcEEEEecCCc------ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEE
Q 001279 33 GIPATASILAFDH-IQRLLAIAT----LDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1108)
Q Consensus 33 G~~~~is~la~sp-~~~~LA~Gs----~dG~I~iw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~ 101 (1108)
|+...-+++||++ |...||.|- .|..+.|||.... ...+..+.......+||..+.+.|+++.....+.
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 4455667899987 567888884 3477999998654 2223333344667899998888999999999999
Q ss_pred EEEcCCCeeeeeecCCCCeeEEEEec-CCCEEEEEeCCCcEEEEEE-ecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 102 VWSLESRSLACCLKWESNITAFSVIS-GSHFMYIGDENGLMSVIKY-DADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 102 vWd~~s~~~~~~~~~~~~Itsl~~~~-~~~~l~vg~~dg~V~vw~~-d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
+.|++........-.+..+..+.++| ..+|++.-. +|.|-+||- -.-+.-++ +--+. +......+
T Consensus 180 ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~-----~i~~~-------~N~~~~~l 246 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQ-----IILRN-------ENKKPKQL 246 (783)
T ss_pred hhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHH-----HHhhC-------CCCcccce
Confidence 99987543333223334566778888 567766555 899999993 21111111 11111 11112459
Q ss_pred EEEecccCCCCCEEEEEECC-CeEEEEEccC
Q 001279 180 VGVLPHPNSSGNRVLIAYEN-ALVILWDVSE 209 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~d-g~V~lWdl~~ 209 (1108)
..++|.|...|. +++...| ++|+++|+..
T Consensus 247 ~~~aycPtrtgl-la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 247 FALAYCPTRTGL-LAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeEEeccCCcch-hhhhccCcceEEEecccc
Confidence 999999988776 6666555 6899999764
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.56 E-value=5.4 Score=42.72 Aligned_cols=177 Identities=11% Similarity=0.086 Sum_probs=103.5
Q ss_pred ccccceeeeeeCCCCCceE--EEEcCCCCEEEEEECCC--cEEEEecCCcceEEeCC--CCCCEEEEEEeeCCCEEEEEe
Q 001279 22 ADLNLRIAVHYGIPATASI--LAFDHIQRLLAIATLDG--RIKVIGGDGIEGLLISP--SQLPYKNLEFLQNQGFLISIT 95 (1108)
Q Consensus 22 ~~~~~~~~~~~G~~~~is~--la~sp~~~~LA~Gs~dG--~I~iw~~~~~~~~~~~~--h~~~V~~l~fs~d~~~L~S~s 95 (1108)
..+.+++...|.|+..... +.|..++.++-+.+.-| .|+.+++.+.++..... ...==..++...| .|.-.+
T Consensus 29 ~~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT 106 (264)
T PF05096_consen 29 PVYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT 106 (264)
T ss_dssp -EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE
T ss_pred ceeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE
Confidence 3456788888988888654 77877777777766665 78889998766653222 2211123333333 455444
Q ss_pred -CCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001279 96 -NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 96 -~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
.++...+||..+-+.+..+..+++=..++ .+++.|+..+....+ +-+|..+-+.... ..+.... .
T Consensus 107 Wk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L--~~~dP~~f~~~~~-i~V~~~g--~------- 172 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRL--YFLDPETFKEVRT-IQVTDNG--R------- 172 (264)
T ss_dssp SSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEE--EEE-TTT-SEEEE-EE-EETT--E-------
T ss_pred ecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccce--EEECCcccceEEE-EEEEECC--E-------
Confidence 58899999999999998888777766776 467778877666645 5555543333321 1222111 0
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeC
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~ 217 (1108)
....+.-+.|. +|...+=......|...|..+|++.....
T Consensus 173 pv~~LNELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 173 PVSNLNELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp E---EEEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred ECCCcEeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 01345556663 56656667777888899999999876553
No 376
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=7.7 Score=44.94 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=103.9
Q ss_pred CceEEEEcCCCCEEEEEECC-CcEEEEecCCcceEEeCCCC-CCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeeee
Q 001279 37 TASILAFDHIQRLLAIATLD-GRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~d-G~I~iw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~~ 113 (1108)
.+.-+++.|++..+.+.... ..+...+...........-. ..-..+.+++.+..+.... .++.|.+.|..+......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 56668888888655444322 24554444311111111111 3345677888877665555 468899999988888888
Q ss_pred ecCCCCeeEEEEecCCCEEEEEeCC-CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 114 LKWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 114 ~~~~~~Itsl~~~~~~~~l~vg~~d-g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
.........++++++++.++++... +.-.++.++...+++... ++.-. . ...+++.| +|+.
T Consensus 112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~---~~vG~------------~-P~~~a~~p--~g~~ 173 (381)
T COG3391 112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT---IPVGN------------T-PTGVAVDP--DGNK 173 (381)
T ss_pred eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE---EecCC------------C-cceEEECC--CCCe
Confidence 7665577889999999999999874 344667777766676643 33111 2 38889988 6775
Q ss_pred EEEEE-CCCeEEEEEccCCeEE
Q 001279 193 VLIAY-ENALVILWDVSEAQII 213 (1108)
Q Consensus 193 ll~~~-~dg~V~lWdl~~~~~~ 213 (1108)
++.+. .++.|.+.|.....+.
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred EEEEecCCCeEEEEeCCCccee
Confidence 55554 7889999997776655
No 377
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.41 Score=59.32 Aligned_cols=150 Identities=14% Similarity=0.118 Sum_probs=91.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCc-----------------ceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCC--c
Q 001279 40 ILAFDHIQRLLAIATLDGRIKVIGGDGI-----------------EGL-LISPSQLPYKNLEFLQNQGFLISITNDN--E 99 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs~dG~I~iw~~~~~-----------------~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~--~ 99 (1108)
.++.++.-.++.++...+.+.|++.... +.+ +..+...++..+...+|+...+.....+ .
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 4677777777777777787777754221 111 2223345777777777766665554433 7
Q ss_pred EEEEEcCCCee--------eeee----cCCCCeeEEEEecCCCE-EEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001279 100 IQVWSLESRSL--------ACCL----KWESNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1108)
Q Consensus 100 I~vWd~~s~~~--------~~~~----~~~~~Itsl~~~~~~~~-l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1108)
|.++|+++-.. ++.. ....-..++.|+|.-.. .++...|+.|+|..+......... +.+
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s--~p~------ 197 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS--FPV------ 197 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc--cCc------
Confidence 99999865421 1111 11234667788877543 456667888877665421111110 111
Q ss_pred cccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEcc
Q 001279 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1108)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~ 208 (1108)
...+++++|+| .|+++++|..+|+++-|-..
T Consensus 198 ---------t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 198 ---------TNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ---------ccceeeEEecc--ccceeeEecCCCeEEEeecc
Confidence 15689999998 69999999999998777544
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.24 E-value=2.4 Score=46.00 Aligned_cols=149 Identities=12% Similarity=0.026 Sum_probs=88.7
Q ss_pred CceEEEEcCCCCEEEEEE---CCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEE-cCCCeee-
Q 001279 37 TASILAFDHIQRLLAIAT---LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS-LESRSLA- 111 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs---~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd-~~s~~~~- 111 (1108)
.+...|++++++.+|.-. ....++++...+....... ...++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999887766 3345555555444333332 23788889999966666666666667774 3333322
Q ss_pred eeecC---CCCeeEEEEecCCCEEEEEe---CCCcEEEEEEecCCCe---eeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 112 CCLKW---ESNITAFSVISGSHFMYIGD---ENGLMSVIKYDADEGK---LFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 112 ~~~~~---~~~Itsl~~~~~~~~l~vg~---~dg~V~vw~~d~~~~~---l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
..... .+.|++|.++|++.+++.-. .++.|+|-.+..+... ....+..+.. .....++.+
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-----------~~~~~v~~v 171 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-----------PLLSDVTDV 171 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-----------cccCcceee
Confidence 11222 23899999999999887666 3566666555433222 1111122211 112579999
Q ss_pred ecccCCCCCEEEEEECCC
Q 001279 183 LPHPNSSGNRVLIAYENA 200 (1108)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg 200 (1108)
.|.+ ++.+++.+...+
T Consensus 172 ~W~~--~~~L~V~~~~~~ 187 (253)
T PF10647_consen 172 AWSD--DSTLVVLGRSAG 187 (253)
T ss_pred eecC--CCEEEEEeCCCC
Confidence 9966 566444444433
No 379
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.20 E-value=6.8 Score=47.40 Aligned_cols=111 Identities=12% Similarity=0.131 Sum_probs=67.0
Q ss_pred EEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEE-eecCcCEEEEEEcCC---C
Q 001279 540 STLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSS---G 615 (1108)
Q Consensus 540 t~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~h~~~Vtslafspd---g 615 (1108)
.+..++|+...+-.|=....|--|-+...+. ++..+ -..+..|+||..-.. .
T Consensus 31 vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPK------------------------Liwsypi~pt~iV~~~dV~~~~~~~ 86 (670)
T PF10395_consen 31 VSDDFSPDSNQIDIGISGSAISSYIIKPTPK------------------------LIWSYPISPTTIVECCDVLEKSDGK 86 (670)
T ss_pred eecccCCCCceEEEEeccchhhheecCCCcc------------------------eeEeeccCcCceEEEEEeEecCCCc
Confidence 3447788888777776666666666655422 22211 124556788776543 3
Q ss_pred CEEEEEeC-CCeEEEEEccCc-----------eE--EEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCC
Q 001279 616 AKLAVGFE-CGRVAVLDMNLL-----------SV--LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPA 681 (1108)
Q Consensus 616 ~~LavGs~-dG~V~vwd~~~~-----------~~--~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~ 681 (1108)
++.++|-. .+..++..+..+ +. .+.. ...+.|..+.|. .+
T Consensus 87 ~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~----kl~~kvv~Ik~~----------------------~~ 140 (670)
T PF10395_consen 87 KLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFEL----KLDDKVVGIKFS----------------------SD 140 (670)
T ss_pred EEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEE----EcccceEEEEEe----------------------cC
Confidence 57777744 444555555433 00 0111 135678888888 33
Q ss_pred ccEEEEEcCCccEEEEeCC
Q 001279 682 EEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 682 ~~~L~s~s~Dg~v~v~d~~ 700 (1108)
+..+++...+|.|.+||.+
T Consensus 141 ~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 141 GKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred CCEEEEEEcCCcEEEEecc
Confidence 6789999999999999983
No 380
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.10 E-value=6.1 Score=43.86 Aligned_cols=204 Identities=12% Similarity=0.063 Sum_probs=110.3
Q ss_pred EEEEcCCCCEEEEEE--CCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC-CCeeeeee--
Q 001279 40 ILAFDHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCL-- 114 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs--~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~-s~~~~~~~-- 114 (1108)
.++++.|++++.+-- -...|-|.|+....++.+.+-.+-+... =+.+ ..+.+.|.||.+.-..+. .|+.....
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iy-P~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIY-PSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEE-EEET-TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEE-ecCC-CceEEEecCCceEEEEECCCCCEeEeecc
Confidence 467888888877753 3356778888777776554433322111 1233 457888999999988887 44443222
Q ss_pred -cCC--CCe-eEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 115 -KWE--SNI-TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 115 -~~~--~~I-tsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
.+. .++ ..=++...+..++--+-+|.|+-.++..+.-++.. ++.+....-.+... .++.-.-+++|+. .
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~W----rPGG~Q~~A~~~~--~ 249 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDAEKADGW----RPGGWQLIAYHAA--S 249 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-EEESS-HHHHHTTE----EE-SSS-EEEETT--T
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-cccccCccccccCc----CCcceeeeeeccc--c
Confidence 111 222 22234445556666788898877777654333332 33332111000000 0123334566653 3
Q ss_pred CEEEEEEC--------CC--eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 191 NRVLIAYE--------NA--LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 191 ~~ll~~~~--------dg--~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
.+|++.-. |+ .|-++|+.+++.+....- +.++.++.- +.
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l------------------------------~~~~~Si~V-sq 298 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL------------------------------EHPIDSIAV-SQ 298 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE------------------------------EEEESEEEE-ES
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC------------------------------CCccceEEE-cc
Confidence 34554322 22 677888899887765432 345667774 45
Q ss_pred CCC-EEEEEE-ccCcEEEEecCCCC
Q 001279 261 SGS-ILAVGY-IDGDILLWNTSTTA 283 (1108)
Q Consensus 261 dg~-~l~sg~-~DG~I~lWd~~~~~ 283 (1108)
+.+ .|++.. .+|.|.+||..+++
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 555 565544 57899999998874
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.95 E-value=1.9 Score=52.61 Aligned_cols=185 Identities=16% Similarity=0.205 Sum_probs=95.5
Q ss_pred CCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEe------CCCc--EEEEEcCCCeeeeeecCCCCeeEEEEe
Q 001279 56 DGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISIT------NDNE--IQVWSLESRSLACCLKWESNITAFSVI 126 (1108)
Q Consensus 56 dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s------~d~~--I~vWd~~s~~~~~~~~~~~~Itsl~~~ 126 (1108)
+|.+.-.+....+.+ -..+....+...+++|||..++..- .|+. |.+++.. +....... ....+.-+|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~-g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLE-GHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceeeec-CCCCCCceEC
Confidence 777766554443322 1112223688999999999887776 2444 5555542 22222222 2348889999
Q ss_pred cCCCEEEEEeCCCc-EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEE-
Q 001279 127 SGSHFMYIGDENGL-MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVIL- 204 (1108)
Q Consensus 127 ~~~~~l~vg~~dg~-V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~l- 204 (1108)
|++.++++...... +++...+ ..+.+... .+.+..... .-...|..+.|+| ||.+++... +|.|.|
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~-~~gql~~~--~vd~ge~~~------~~~g~Issl~wSp--DG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDP-ATGQLART--PVDASAVAS------RVPGPISELQLSR--DGVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCCceEEEecCcceEEEeccC-CCceEEEE--eccCchhhh------ccCCCcCeEEECC--CCCEEEEEE-CCEEEEE
Confidence 99888877754322 2222221 12222211 121111100 0125699999988 899887765 455544
Q ss_pred --EEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 205 --WDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 205 --Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
-....+. ..+.... .+ ...-...+.++.|. .++. |+++..++.-.+|.+.
T Consensus 474 ~Vvr~~~G~-~~l~~~~--~l---------------------~~~l~~~~~~l~W~-~~~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 474 VVEQTEDGQ-YALTNPR--EV---------------------GPGLGDTAVSLDWR-TGDS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred EEEeCCCCc-eeecccE--Ee---------------------ecccCCccccceEe-cCCE-EEEEecCCCCceEEEe
Confidence 2222232 1110000 00 00002346789998 6666 5577776666667654
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.76 E-value=0.18 Score=51.67 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=69.2
Q ss_pred CCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCC-CCee
Q 001279 47 QRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWE-SNIT 121 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~-~~It 121 (1108)
.+-|++|+.+|.|++|+.... .-......+.-..-+.-..++.+..+++.++.|+.|++.-.+.+... +|. ..+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 567889999999999987621 11112222222222222334557788889999999999988877766 444 5677
Q ss_pred EEEEecCCCEEEEE--eCCCcEEEEEEec
Q 001279 122 AFSVISGSHFMYIG--DENGLMSVIKYDA 148 (1108)
Q Consensus 122 sl~~~~~~~~l~vg--~~dg~V~vw~~d~ 148 (1108)
.+.++..+.++++. +.+..++.|+++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777777777 7777778888763
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.67 E-value=0.13 Score=52.59 Aligned_cols=109 Identities=9% Similarity=0.190 Sum_probs=67.0
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001279 91 LISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1108)
Q Consensus 91 L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1108)
|...+.++.|+-.++...+..... .....- +.+...+.-+++|..+|.|++|++.... .+... +..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g-~~~d~---~~s------- 99 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEG-AHSDR---VCS------- 99 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccc-hHHHh---hhc-------
Confidence 455567888888887665433221 111111 3444456789999999999999987321 11110 110
Q ss_pred CCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCC
Q 001279 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1108)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~ 218 (1108)
....|.++... ..++....++..+|.|+.|++.-.+.+.+.++
T Consensus 100 -----~~e~i~~~Ip~-~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 100 -----GEESIDLGIPN-GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred -----ccccceecccc-ccccceeEEeccCCceeeeccccCceeeeecc
Confidence 01334444332 23556688999999999999999888777665
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.36 E-value=19 Score=42.15 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=70.6
Q ss_pred CceEEEEcCCCCEEEEEE-CCC----cEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC-----------cE
Q 001279 37 TASILAFDHIQRLLAIAT-LDG----RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN-----------EI 100 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs-~dG----~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~-----------~I 100 (1108)
.+..+++||++++||.+- .+| .|+++|+.+.+.+...-.......+.|.+++..|+....+. .|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 344688999999999873 334 49999998776553221122233499999987776665332 37
Q ss_pred EEEEcCCCeee--eee--cCCCC-eeEEEEecCCCEEEEEeCCCc--EEEEEEecCC
Q 001279 101 QVWSLESRSLA--CCL--KWESN-ITAFSVISGSHFMYIGDENGL--MSVIKYDADE 150 (1108)
Q Consensus 101 ~vWd~~s~~~~--~~~--~~~~~-Itsl~~~~~~~~l~vg~~dg~--V~vw~~d~~~ 150 (1108)
..|++.+..-- ..+ ..... ...+..+.+++++++....+. -.+|-++...
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 88888776432 222 22233 667888999999887654432 3455555543
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.24 E-value=6.2 Score=42.78 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=68.8
Q ss_pred CEEEEEEeeCCCEEEEEe---CCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeee
Q 001279 78 PYKNLEFLQNQGFLISIT---NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s---~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~ 154 (1108)
.+...++++++..++.+. ....+.++..... .........++.-+|++++...++...+...+++.... .+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~-~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA-SGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecC-CCcce
Confidence 789999999999888877 3344666655433 22222334788889999977777777666666664221 22322
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC---CCeEEEEE
Q 001279 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWD 206 (1108)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~---dg~V~lWd 206 (1108)
......+... ..|+.+.++| +|.+++.... ++.|.|=-
T Consensus 102 ~~~v~~~~~~------------~~I~~l~vSp--DG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 102 PVEVDWPGLR------------GRITALRVSP--DGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred eEEecccccC------------CceEEEEECC--CCcEEEEEEecCCCCeEEEEE
Confidence 2111122111 2699999988 8999887663 34554443
No 386
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.17 E-value=3.8 Score=38.76 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=74.0
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEecCCcc--------eEEeCCCCCCEEEEEEee----CCCEEEEEeCCCcEEEEEcC
Q 001279 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIE--------GLLISPSQLPYKNLEFLQ----NQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~--------~~~~~~h~~~V~~l~fs~----d~~~L~S~s~d~~I~vWd~~ 106 (1108)
+.-.|+....-||.++..|+|.|++..... .+....-...|++|+--+ ++.-++..++..+|-.||+.
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 455788888899999999999999864321 112222344677776543 23445666668899999998
Q ss_pred CCeeeeeecCCCCeeEEEEec----CCCEEEEEeCCCcEEEEEEecCCCeee
Q 001279 107 SRSLACCLKWESNITAFSVIS----GSHFMYIGDENGLMSVIKYDADEGKLF 154 (1108)
Q Consensus 107 s~~~~~~~~~~~~Itsl~~~~----~~~~l~vg~~dg~V~vw~~d~~~~~l~ 154 (1108)
...-+-....+..|.++.+-. ..+++++| |+..|+-+|.+...+.
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG---Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG---GNCSIQGFDYEGNEIF 130 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEEC---ceEEEEEeCCCCcEEE
Confidence 775554445556777777743 34566776 5666777776544443
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.99 E-value=6.1 Score=40.83 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=39.9
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE
Q 001279 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1108)
Q Consensus 188 ~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1108)
.+|++.++.+..|+|.-.|..+++++..+. ++ ...|+|+||..++-..+++
T Consensus 221 ~eG~L~Va~~ng~~V~~~dp~tGK~L~eik---------lP--------------------t~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 221 TEGNLYVATFNGGTVQKVDPTTGKILLEIK---------LP--------------------TPQITSCCFGGKNLDILYV 271 (310)
T ss_pred cCCcEEEEEecCcEEEEECCCCCcEEEEEE---------cC--------------------CCceEEEEecCCCccEEEE
Confidence 378877888888899999999998865442 22 6789999988666666655
Q ss_pred EE
Q 001279 268 GY 269 (1108)
Q Consensus 268 g~ 269 (1108)
.+
T Consensus 272 T~ 273 (310)
T KOG4499|consen 272 TT 273 (310)
T ss_pred Ee
Confidence 44
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.71 E-value=0.9 Score=52.30 Aligned_cols=126 Identities=16% Similarity=0.204 Sum_probs=74.5
Q ss_pred EEEEEeCCCeEEEEecCceEEE-EEe--cCCC-CCccccccccCccceeecccCCcceEEEEEeec-CcCEEEEEEc---
Q 001279 541 TLSFCFINSSLAVGNEFGLVYI-YNL--NGSL-DAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NSPVRALQFT--- 612 (1108)
Q Consensus 541 ~lafs~d~~~Lasg~~dG~V~l-w~l--~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-~~~Vtslafs--- 612 (1108)
.++.+|++.+||.+..+..|.+ ..+ .... .+...... +...+..- ...||++.+-
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~-----------------~~g~l~~~~~e~ITsi~clpl~ 68 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSIS-----------------WSGPLDDEPGECITSILCLPLS 68 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEE-----------------eeeeccCCCCCEEEEEEEEEee
Confidence 4688999999999988877766 333 2221 11110000 00111111 1456666553
Q ss_pred --------CCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccE
Q 001279 613 --------SSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEV 684 (1108)
Q Consensus 613 --------pdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~ 684 (1108)
+|...+|+|..+|.|++|.-.+. +++.-.. |..+|..+.+....... .+ +....-
T Consensus 69 s~~~s~~~~dw~~I~VG~ssG~vrfyte~G~-LL~~Q~~---h~~pV~~ik~~~~~~~~----~~---------~~~~ee 131 (415)
T PF14655_consen 69 SQKRSTGGPDWTCIAVGTSSGYVRFYTENGV-LLLSQLL---HEEPVLKIKCRSTKIPR----HP---------GDSSEE 131 (415)
T ss_pred cccccCCCCCcEEEEEEecccEEEEEeccch-HHHHHhc---CccceEEEEecccCCCC----CC---------cccccE
Confidence 44689999999999999998654 4433333 89999999988653321 00 000133
Q ss_pred EEEEcCCccEEEEeCCC
Q 001279 685 IIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 685 L~s~s~Dg~v~v~d~~~ 701 (1108)
|.+.-. +.|+++|+.+
T Consensus 132 l~ily~-~~v~~Idg~s 147 (415)
T PF14655_consen 132 LSILYP-SAVVIIDGFS 147 (415)
T ss_pred EEEEEC-CEEEEEecHH
Confidence 555555 8888998653
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.40 E-value=4 Score=43.34 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=39.4
Q ss_pred EEcCCCCEEEEEECC-----CcEEEEecCCc-ceE-EeCCCCCCEEEEEEeeCCCEEEEEe
Q 001279 42 AFDHIQRLLAIATLD-----GRIKVIGGDGI-EGL-LISPSQLPYKNLEFLQNQGFLISIT 95 (1108)
Q Consensus 42 a~sp~~~~LA~Gs~d-----G~I~iw~~~~~-~~~-~~~~h~~~V~~l~fs~d~~~L~S~s 95 (1108)
.|||||++|..-..| |.|-|||.+.. +.+ ....|.-.-..+.+.+||..|+.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 489999999776555 88999998532 222 4455666667888999988877764
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.30 E-value=14 Score=39.75 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=111.5
Q ss_pred cccceeeee--eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCC--CCCCEEEEEEeeCCCEEEEEeCCC
Q 001279 23 DLNLRIAVH--YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP--SQLPYKNLEFLQNQGFLISITNDN 98 (1108)
Q Consensus 23 ~~~~~~~~~--~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~--h~~~V~~l~fs~d~~~L~S~s~d~ 98 (1108)
.+..+.... -|+...++++.|+|+.+.|.+-+..+.-.||=-...+++..-+ .-..-..+.+..++.+.++--.++
T Consensus 71 ~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~ 150 (316)
T COG3204 71 EYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDR 150 (316)
T ss_pred CceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcc
Confidence 344444444 6889999999999999998888777766666443333332222 122345667777776666666677
Q ss_pred cEEEEEcCCCeeee-----ee-----cC-CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeec-ccccc
Q 001279 99 EIQVWSLESRSLAC-----CL-----KW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNIS-ADALS 166 (1108)
Q Consensus 99 ~I~vWd~~s~~~~~-----~~-----~~-~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~-~~~~~ 166 (1108)
.+.+.-+....-+. .+ .. ...-..++++|....++++=+..=+.|+.++.....+... +. .+...
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~---~~~~~~~~ 227 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH---ASLDPTAD 227 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc---cccCcccc
Confidence 77777765542111 11 11 3456789999999999999888777777776432222110 10 00000
Q ss_pred cccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe
Q 001279 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1108)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~ 211 (1108)
..++ ...|.++.|++. .+.+|+.+-.++.+.-.|.+..-
T Consensus 228 ~~~f-----~~DvSgl~~~~~-~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 228 RDLF-----VLDVSGLEFNAI-TNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred cceE-----eeccccceecCC-CCcEEEEecCCceEEEEecCCCe
Confidence 0000 144788999886 46667777888888888887764
No 391
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.24 E-value=6.6 Score=40.52 Aligned_cols=124 Identities=14% Similarity=0.178 Sum_probs=72.4
Q ss_pred ecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC---c---eEEEE-EecCCCCCccc
Q 001279 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF---G---LVYIY-NLNGSLDAKNF 574 (1108)
Q Consensus 502 s~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d---G---~V~lw-~l~~~~~~~~~ 574 (1108)
...+.|.+|++....+.+++.+.+ + +.|..|.++..|.||++-=.+ . .+|+| ||.....+. .
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T------v----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~-~ 103 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST------V----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN-S 103 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc------h----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC-C
Confidence 455679999999777777666652 2 368999999999999985442 2 56776 454431111 0
Q ss_pred cccccCcc-ceeecccCC-cceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceE
Q 001279 575 LFVLETKS-EVHALPEGK-ISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV 637 (1108)
Q Consensus 575 ~~~~~~~~-~~~~~~~~~-g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~ 637 (1108)
.....-.+ .+.....+. +-+.-..-...+.++++++.+|-..-|++|+.+ .+.||.+.....
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~~~ 167 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQTI 167 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEEEE
Confidence 00000000 000000000 111222223357789999999976678888875 488998765544
No 392
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.07 E-value=1.9 Score=51.65 Aligned_cols=92 Identities=7% Similarity=-0.040 Sum_probs=60.8
Q ss_pred CcEEEEecCC-----cceEEeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCee------------eeeecCCC
Q 001279 57 GRIKVIGGDG-----IEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSL------------ACCLKWES 118 (1108)
Q Consensus 57 G~I~iw~~~~-----~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~~------------~~~~~~~~ 118 (1108)
++|.++|... ..++...+-......+.++|||.+++..+. +++|.|.|+++.+. ........
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 3455555544 233333333334567889999999888875 89999999988652 23333333
Q ss_pred CeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 119 NITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 119 ~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
.....+|+++++...+-.-|..|-.|+++.
T Consensus 376 GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 455678888887656666788888888874
No 393
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.85 E-value=5.4 Score=49.69 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=55.1
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEE-----EecCC------cceE----------EeCCCCCCEEEEEEeeC---CC
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKV-----IGGDG------IEGL----------LISPSQLPYKNLEFLQN---QG 89 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~i-----w~~~~------~~~~----------~~~~h~~~V~~l~fs~d---~~ 89 (1108)
..-.|..+.++|+|++||..+..|...+ |+.++ .++. +...+...|..+.|+|. +.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3456888999999999999998775544 33211 1111 22345568999999986 58
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 001279 90 FLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 90 ~L~S~s~d~~I~vWd~~s~ 108 (1108)
+|+.-++|++|++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 9999999999999999754
No 394
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.84 E-value=6.3 Score=49.11 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=71.6
Q ss_pred cCCcEEEEeCCCCceeeEeeecc---cc-------ceee--ccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCC
Q 001279 503 HDGSVRIWDATYPVFKLICALDA---EV-------QGIE--VAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1108)
Q Consensus 503 ~DGtVriWd~~~~~l~~~~~l~~---~~-------~~~~--l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~ 570 (1108)
.|+.+.+||-....+... .+.. .. .+.. ...-...|..|.++++|++|+..|..|.+.|.--.....
T Consensus 40 ~d~~L~vWd~~e~~l~~~-nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~ 118 (717)
T PF10168_consen 40 RDGDLFVWDSSECCLLTV-NLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGK 118 (717)
T ss_pred eCCEEEEEECCCCEEEEE-eeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCc
Confidence 368899999776554211 1111 00 0000 112334689999999999999999988776665332111
Q ss_pred CccccccccCccceeecccCCcceEEEE-------EeecCcCEEEEEEcCC---CCEEEEEeCCCeEEEEEccCce
Q 001279 571 AKNFLFVLETKSEVHALPEGKISLCRAV-------FSLVNSPVRALQFTSS---GAKLAVGFECGRVAVLDMNLLS 636 (1108)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~h~~~Vtslafspd---g~~LavGs~dG~V~vwd~~~~~ 636 (1108)
.+. | ..++. ...|... ...+...|..+.|+|. +.+|++=+.|+++|+||+....
T Consensus 119 ~~~--~-~~g~~---------~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 119 NGE--F-EDGKK---------EINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ccc--c-cCCCc---------ceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 000 0 00000 0012111 1234678999999997 4899999999999999997643
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.73 E-value=8.1 Score=42.75 Aligned_cols=153 Identities=11% Similarity=0.041 Sum_probs=78.4
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecC
Q 001279 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 488 ~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
.+..++++++++.++.-....-||-....-. .........|+.|.|.|++.+.+++ ..|.|+.=+...
T Consensus 149 ~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~-----------~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 149 DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ-----------PHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEEE-TTS-EEEEETTSSEEEEE-TT-SS-E-----------EEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred eEEECCCCcEEEEECcccEEEEecCCCccce-----------EEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3356789988887765555667875543322 1122344689999999998776644 788887766222
Q ss_pred CCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCC
Q 001279 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 647 (1108)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h 647 (1108)
.... +.. .+.....-.-.+..|+|.++....|+|+. |++ +....+++-=.+.+.....
T Consensus 217 ~~~~---------------w~~-----~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~ 274 (302)
T PF14870_consen 217 DGET---------------WSE-----PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENV 274 (302)
T ss_dssp EEEE---------------E--------B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTS
T ss_pred Cccc---------------ccc-----ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCC
Confidence 1000 000 00000011223889999999988887765 433 3444444433233333456
Q ss_pred CCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEE
Q 001279 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1108)
Q Consensus 648 ~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~ 697 (1108)
++-...+.|.. .+.-++.+.||.|.-|
T Consensus 275 ~~n~~~i~f~~-----------------------~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 275 PSNLYRIVFVN-----------------------PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SS---EEEEEE-----------------------TTEEEEE-STTEEEEE
T ss_pred CCceEEEEEcC-----------------------CCceEEECCCcEEEEe
Confidence 77789999983 2457888888887655
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=13 Score=42.92 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=84.8
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCe-------EEEEecCceEEEEEecCCC
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS-------LAVGNEFGLVYIYNLNGSL 569 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~-------Lasg~~dG~V~lw~l~~~~ 569 (1108)
+|.++..-..++=-|+..+... -+++-|.. |+-+.+.|+... =++|-.+..|.=||..-..
T Consensus 348 il~~~~~~~~l~klDIE~GKIV-----------eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV-----------EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred EeeCCCCcCcceeeecccceee-----------eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence 3445555555777788877754 22333332 667777776532 2346666777777766432
Q ss_pred CCccccccccCccceeecccCCcceEEEEEeec----CcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCC
Q 001279 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLV----NSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1108)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h----~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~ 645 (1108)
.. .+..-..| ...-.|.+-..+| ++|+|+.+|.|++||-.+.... ..++
T Consensus 416 ~~-----------------------kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK---TAlP 468 (644)
T KOG2395|consen 416 KN-----------------------KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK---TALP 468 (644)
T ss_pred cc-----------------------eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh---hccc
Confidence 11 01111111 1223444444555 8999999999999998544333 4578
Q ss_pred CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
+...+|..+..+ .++.+|+ |+.+..+.++|.
T Consensus 469 gLG~~I~hVdvt----------------------adGKwil-~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 469 GLGDAIKHVDVT----------------------ADGKWIL-ATCKTYLLLIDT 499 (644)
T ss_pred ccCCceeeEEee----------------------ccCcEEE-EecccEEEEEEE
Confidence 899999999988 3455554 556677777774
No 397
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.31 E-value=6.3 Score=43.86 Aligned_cols=102 Identities=12% Similarity=0.006 Sum_probs=65.1
Q ss_pred CCCCCeEEEEEEeCCCeEEEEecC-ceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEc
Q 001279 534 GSRAPVSTLSFCFINSSLAVGNEF-GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT 612 (1108)
Q Consensus 534 ~h~~~Vt~lafs~d~~~Lasg~~d-G~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafs 612 (1108)
+|-..-..|+||||++.|..+... +.+.-|++....-.. .+......+....+.--.++..
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~------------------~~~~~~~~~~~~~G~PDG~~vD 221 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI------------------GGRRGFVDFDEEPGLPDGMAVD 221 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc------------------CCcceEEEccCCCCCCCceEEe
Confidence 333345679999999888877664 777777776311000 0001122333456777788889
Q ss_pred CCCCEEEEEeCCC-eEEEEEccCceEEEEeecCCCCCCceEEEEee
Q 001279 613 SSGAKLAVGFECG-RVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1108)
Q Consensus 613 pdg~~LavGs~dG-~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs 657 (1108)
.+|.+.+++-.+| .|.+|+.. ++.+..... ....+++++|.
T Consensus 222 adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~~t~~~Fg 263 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKRPTNPAFG 263 (307)
T ss_pred CCCCEEEecccCCceEEEECCC-CcEEEEEEC---CCCCCccceEe
Confidence 9998886555554 89999999 666544433 33778888888
No 398
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.24 E-value=42 Score=40.70 Aligned_cols=113 Identities=11% Similarity=0.136 Sum_probs=68.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCCC--CeeE---EEE-----ecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWES--NITA---FSV-----ISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~--~Its---l~~-----~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~ 157 (1108)
++.|+.++.++.|.-.|..+++.+..+.... .+.. ... .-.+..+++++.++. ++-+|..+|++.-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~--l~ALDa~TGk~~W~- 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDAR--LVALDAKTGKVVWS- 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCE--EEEEECCCCCEEee-
Confidence 4678888888999999999999988775432 1211 100 112457888888884 56677777777632
Q ss_pred eeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC------CCeEEEEEccCCeEEEEe
Q 001279 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~lWdl~~~~~~~~~ 216 (1108)
+.+..+. .-..+.-.|.-.+.+++++.. +|.|.-+|.++++.++.+
T Consensus 146 ~~~~~~~-------------~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 146 KKNGDYK-------------AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ccccccc-------------ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 1111110 001112222212334666653 689999999999988765
No 399
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.07 E-value=5.9 Score=37.51 Aligned_cols=116 Identities=15% Similarity=0.204 Sum_probs=74.7
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcCCC--------eeeeeecCCCCeeEEEEec-----CCCEEEEEeCCCcEEEEEEe
Q 001279 81 NLEFLQNQGFLISITNDNEIQVWSLESR--------SLACCLKWESNITAFSVIS-----GSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 81 ~l~fs~d~~~L~S~s~d~~I~vWd~~s~--------~~~~~~~~~~~Itsl~~~~-----~~~~l~vg~~dg~V~vw~~d 147 (1108)
.-.|......|+.++..+.|.|.+...+ ..+..+.....|++++.-+ ....|++|+... +.+++++
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~-llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTS-LLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccce-EEEEEcc
Confidence 3456555677999999999999987644 3456667778899987765 356888988776 4466655
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc-CCCCCEEEEEECCCeEEEEEccCCeEEEE
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP-NSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P-~~~~~~ll~~~~dg~V~lWdl~~~~~~~~ 215 (1108)
.....+.+ .++ +.|.++.+-- .....-+++.+.+..|.=||.+..+..+.
T Consensus 82 ~N~d~Fyk---e~~---------------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYK---EVP---------------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhh---hCc---------------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 32211111 011 5577766621 11122388888888888888888776654
No 400
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.71 E-value=3.9 Score=50.00 Aligned_cols=185 Identities=11% Similarity=0.040 Sum_probs=103.5
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceee----Eeeeccccce-------eeccCCCCCeEEEEEEe--CCCeEEEEec
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKL----ICALDAEVQG-------IEVAGSRAPVSTLSFCF--INSSLAVGNE 556 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~----~~~l~~~~~~-------~~l~~h~~~Vt~lafs~--d~~~Lasg~~ 556 (1108)
+.+. +++|+.|. .+.|.||+.......+ ...+...... .....-...|..|.... +...|+.+.+
T Consensus 45 alsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~D 122 (717)
T PF08728_consen 45 ALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTD 122 (717)
T ss_pred EEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEec
Confidence 4554 66777766 6789999976544321 1111111000 00001122566665554 3457899999
Q ss_pred CceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEc--CCCCEEEEEeCCCeEEEEEccC
Q 001279 557 FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT--SSGAKLAVGFECGRVAVLDMNL 634 (1108)
Q Consensus 557 dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafs--pdg~~LavGs~dG~V~vwd~~~ 634 (1108)
||.|.+|....--...+. ...............+...+ .....++.|++. ...++||+++....|.||-+..
T Consensus 123 dG~V~~Yyt~~I~~~i~~-----~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 123 DGDVLAYYTETIIEAIER-----FSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred CCeEEEEEHHHHHHHHHh-----hccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 999999987532100000 00000000000111222222 245689999999 8889999999999999887654
Q ss_pred ceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCcc-EEEEEcCCccEEEEeC
Q 001279 635 LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEE-VIIVLFKDAKISIVGG 699 (1108)
Q Consensus 635 ~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~-~L~s~s~Dg~v~v~d~ 699 (1108)
..-......-..|..-|-++.|-++... +.+. .|++++-.|.|.+|+.
T Consensus 197 ~~~r~~~~~s~~~~hNIP~VSFl~~~~d-----------------~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VDERFYHVPSHQHSHNIPNVSFLDDDLD-----------------PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccccccccCCCeeEeecCCCC-----------------CccceEEEEEeccCcEEEEEE
Confidence 2111000111126667889999876543 3343 6778888999999886
No 401
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=90.65 E-value=0.15 Score=37.83 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhh
Q 001279 1063 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1101 (1108)
Q Consensus 1063 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~ 1101 (1108)
+|+.+|.+||=.+-+.+.-=.++|+.+..+|++||.+|-
T Consensus 1 ekil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred ChHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478899999998888766667899999999999999973
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.41 E-value=6.7 Score=46.00 Aligned_cols=153 Identities=14% Similarity=0.216 Sum_probs=83.8
Q ss_pred CEEEEEEeeCCCEEEEEe--CCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCC-----CEEEEEeCCCcEEEEEEec--
Q 001279 78 PYKNLEFLQNQGFLISIT--NDNEIQVWSLESRSLACCLKWESNITAFSVISGS-----HFMYIGDENGLMSVIKYDA-- 148 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s--~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~-----~~l~vg~~dg~V~vw~~d~-- 148 (1108)
||..++|......+++.= ..|++++=|- ..++.-..|..++|.|-+ .+||+- -...|.||.+-.
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCc
Confidence 788888876544444432 2344433332 223444668899999863 355555 455689999863
Q ss_pred -CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC--eEEEEeCCCcccccc
Q 001279 149 -DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKD 225 (1108)
Q Consensus 149 -~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~--~~~~~~~~~~~~~~~ 225 (1108)
+.+++... +.-. ..+. ++ --..++.|||. ...|.+-.....=+++++... ++..-...
T Consensus 94 ~e~~K~l~s-QtcE---i~e~--~p----vLpQGCVWHPk--~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~------- 154 (671)
T PF15390_consen 94 TERNKLLMS-QTCE---IREP--FP----VLPQGCVWHPK--KAILTVLTARDVSVLPSVHCDSSRVKADIKT------- 154 (671)
T ss_pred cccccceee-eeee---ccCC--cc----cCCCcccccCC--CceEEEEecCceeEeeeeeeCCceEEEeccC-------
Confidence 22333211 1000 0010 11 12356789995 444555455554466776543 33221111
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc-CcEEEEecC
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNTS 280 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D-G~I~lWd~~ 280 (1108)
.+.|.|+||. .||+.|+++-.. =.-++||-.
T Consensus 155 -----------------------~G~IhCACWT-~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 155 -----------------------SGLIHCACWT-KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred -----------------------CceEEEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence 6789999998 899988776433 234678754
No 403
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.02 E-value=17 Score=44.63 Aligned_cols=158 Identities=15% Similarity=0.227 Sum_probs=99.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEE---------eC--------------CCCCCEEEEEEee--C
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL---------IS--------------PSQLPYKNLEFLQ--N 87 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~---------~~--------------~h~~~V~~l~fs~--d 87 (1108)
|.....+++.= ..+|.+|. .+.|.||+.+...... .. +-...|..|.... +
T Consensus 38 gfKNNLtalsq---~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~ 113 (717)
T PF08728_consen 38 GFKNNLTALSQ---RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGG 113 (717)
T ss_pred ccccceeEEec---CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCC
Confidence 45555555442 77888876 6899999985432211 00 0112355554433 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCC-----------e---------eeeeecCCCCeeEEEEe--cCCCEEEEEeCCCcEEEEE
Q 001279 88 QGFLISITNDNEIQVWSLESR-----------S---------LACCLKWESNITAFSVI--SGSHFMYIGDENGLMSVIK 145 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~-----------~---------~~~~~~~~~~Itsl~~~--~~~~~l~vg~~dg~V~vw~ 145 (1108)
...|+.|.+||.|.+|.+++- . +.-.+......+.+++. ...+++|+++....|.|+.
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 568899999999999976210 0 11122334578899998 8889999999999999999
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC---CC-EEEEEECCCeEEEEEcc
Q 001279 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS---GN-RVLIAYENALVILWDVS 208 (1108)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~---~~-~ll~~~~dg~V~lWdl~ 208 (1108)
+...+.+... .+.+. +...|-+|.|-+... |. .|++++-.|.+.+|++.
T Consensus 194 f~l~~~r~~~----~~s~~----------~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 194 FALVDERFYH----VPSHQ----------HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred Eecccccccc----ccccc----------cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 8763222221 11110 124588888877542 22 57788899999998873
No 404
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=4.4 Score=46.65 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=115.0
Q ss_pred CCCceEEEEc-CCCCEEEEEECC------CcEEEEec-CCcceEEeCC-------CC-CCEEEEEEeeCCC-EEEEEeCC
Q 001279 35 PATASILAFD-HIQRLLAIATLD------GRIKVIGG-DGIEGLLISP-------SQ-LPYKNLEFLQNQG-FLISITND 97 (1108)
Q Consensus 35 ~~~is~la~s-p~~~~LA~Gs~d------G~I~iw~~-~~~~~~~~~~-------h~-~~V~~l~fs~d~~-~L~S~s~d 97 (1108)
.+.|..+++. -+..+|++|... .+|-|+.- ++.++..... |. .|-..|-...+.. .|.++...
T Consensus 276 ~~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~ 355 (644)
T KOG2395|consen 276 EGGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQ 355 (644)
T ss_pred hcccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCc
Confidence 3446666665 467788888753 33333332 1222221111 11 1222333333333 34445556
Q ss_pred CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCC-------EEEEEeCCCcEEEEEEecCCC-eeeeeceeeccccccccc
Q 001279 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSH-------FMYIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKA 169 (1108)
Q Consensus 98 ~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~-------~l~vg~~dg~V~vw~~d~~~~-~l~~~~~~i~~~~~~~~~ 169 (1108)
..|.-.|++.|+++........|+-+.+.|+.+ .-++|-++..|.-||...+.. ++.. ..++.....
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~----~q~kqy~~k- 430 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV----VQSKQYSTK- 430 (644)
T ss_pred CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee----eeccccccc-
Confidence 779999999999999998887788888888764 236788888777777654332 2211 122221111
Q ss_pred CCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCCCC
Q 001279 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1108)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1108)
....|.+- +.+|. +++|+.+|-|||||--..+....+ +.
T Consensus 431 -------~nFsc~aT--T~sG~-IvvgS~~GdIRLYdri~~~AKTAlPgL------------------------------ 470 (644)
T KOG2395|consen 431 -------NNFSCFAT--TESGY-IVVGSLKGDIRLYDRIGRRAKTALPGL------------------------------ 470 (644)
T ss_pred -------cccceeee--cCCce-EEEeecCCcEEeehhhhhhhhhccccc------------------------------
Confidence 22444444 44665 999999999999996332222211 11
Q ss_pred CCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 249 EKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 249 ~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
..+|+.+. .+.||.+|++.+. ..|.+-+..
T Consensus 471 G~~I~hVd-vtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 471 GDAIKHVD-VTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred CCceeeEE-eeccCcEEEEecc-cEEEEEEEe
Confidence 44677777 4589998876654 566666653
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.21 E-value=47 Score=36.87 Aligned_cols=159 Identities=9% Similarity=0.058 Sum_probs=77.3
Q ss_pred CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-eeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCC
Q 001279 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1108)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~ 151 (1108)
.+-.+.+..+..++||.+++.++..+...-||--.. =..+...-...|.++.|.+++.+.+++ ..|.|+.=+......
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 344578999999999887777776667788885432 222333455789999999997765554 778665544111111
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCCcccccccccCC
Q 001279 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDS 230 (1108)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~ 230 (1108)
...+. .++ .....-.+..++|.| +.. +.++..+|.+ +...+.++- ......
T Consensus 220 ~w~~~--~~~----------~~~~~~~~ld~a~~~--~~~-~wa~gg~G~l-~~S~DgGktW~~~~~~------------ 271 (302)
T PF14870_consen 220 TWSEP--IIP----------IKTNGYGILDLAYRP--PNE-IWAVGGSGTL-LVSTDGGKTWQKDRVG------------ 271 (302)
T ss_dssp EE-----B-T----------TSS--S-EEEEEESS--SS--EEEEESTT-E-EEESSTTSS-EE-GGG------------
T ss_pred ccccc--cCC----------cccCceeeEEEEecC--CCC-EEEEeCCccE-EEeCCCCccceECccc------------
Confidence 11110 000 001113489999976 455 6667777763 445555542 111100
Q ss_pred CCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEE
Q 001279 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1108)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lW 277 (1108)
..-...+..+.|..+ ..-.+-+.+|.|.-|
T Consensus 272 ---------------~~~~~n~~~i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 272 ---------------ENVPSNLYRIVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp ---------------TTSSS---EEEEEET--TEEEEE-STTEEEEE
T ss_pred ---------------cCCCCceEEEEEcCC--CceEEECCCcEEEEe
Confidence 001456788887633 444556688988776
No 406
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.51 E-value=2 Score=31.84 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=27.7
Q ss_pred cCEEEEEEcCCC---CEEEEEeCCCeEEEEEccCc
Q 001279 604 SPVRALQFTSSG---AKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 604 ~~Vtslafspdg---~~LavGs~dG~V~vwd~~~~ 635 (1108)
++|+++.|||.. .+||..=..|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 579999999854 59999999999999999963
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.10 E-value=10 Score=40.45 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=44.3
Q ss_pred EEEeCCCeEEEEecC-----ceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCE
Q 001279 543 SFCFINSSLAVGNEF-----GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1108)
Q Consensus 543 afs~d~~~Lasg~~d-----G~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~ 617 (1108)
.||+||++|...-.| |.|-||+.... |+-+..+..|.-.-+.|.+.+||+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~------------------------fqrvgE~~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG------------------------FQRVGEFSTHGIGPHEVTLMADGRT 175 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc------------------------cceecccccCCcCcceeEEecCCcE
Confidence 599999998765443 88999998743 3455667778778889999999999
Q ss_pred EEEEeC
Q 001279 618 LAVGFE 623 (1108)
Q Consensus 618 LavGs~ 623 (1108)
+++...
T Consensus 176 lvvanG 181 (366)
T COG3490 176 LVVANG 181 (366)
T ss_pred EEEeCC
Confidence 888754
No 408
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.67 E-value=3.3 Score=43.69 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=46.3
Q ss_pred EeeCCCEEEEEeCCCcEEEEEcCCCeeeeee---------------cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 84 FLQNQGFLISITNDNEIQVWSLESRSLACCL---------------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 84 fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~---------------~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
+..++.+|+.++.+|.+.+||+.+++.+..- .....|+.+.+..+|.-+ +...+|..+.|+.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi-V~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI-VTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE-EEEeCCCEEEecccc
Confidence 3456789999999999999999998754222 133578888888666544 445667777777664
No 409
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.51 E-value=1e+02 Score=39.03 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=73.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCee---------EEEEe----------------cCCCEEEEEeCCCcEE
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNIT---------AFSVI----------------SGSHFMYIGDENGLMS 142 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~It---------sl~~~----------------~~~~~l~vg~~dg~V~ 142 (1108)
+..|+.++.++.|.-.|..+++.+..+.....+. .+++. .+...+++++.|+ +
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg--~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA--R 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC--e
Confidence 5678888889999999999999998875443321 12221 1345888999999 4
Q ss_pred EEEEecCCCeeeeeceeecccc---cccccCCCCCCCCCeEEEecccCCCCCEEEEEEC----------CCeEEEEEccC
Q 001279 143 VIKYDADEGKLFQLPYNISADA---LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVSE 209 (1108)
Q Consensus 143 vw~~d~~~~~l~~~~~~i~~~~---~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----------dg~V~lWdl~~ 209 (1108)
++-+|..+|+.... +..+. +.+.++... ..-..+.-.|.-.+..+++|+. +|.|+-+|+++
T Consensus 272 LiALDA~TGk~~W~---fg~~G~vdl~~~~g~~~---~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 272 LIALDADTGKLCED---FGNNGTVDLTAGMGTTP---PGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred EEEEECCCCCEEEE---ecCCCceeeecccCcCC---CcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence 57777777777632 32110 111111000 0011222233223445777753 68999999999
Q ss_pred CeEEEEeC
Q 001279 210 AQIIFVGG 217 (1108)
Q Consensus 210 ~~~~~~~~ 217 (1108)
++.++.+.
T Consensus 346 Gkl~W~~~ 353 (764)
T TIGR03074 346 GALVWAWD 353 (764)
T ss_pred CcEeeEEe
Confidence 99987653
No 410
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.19 E-value=9.7 Score=48.29 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=91.3
Q ss_pred CCEEEEEECC---------CcEEEEecCC-------------cceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001279 47 QRLLAIATLD---------GRIKVIGGDG-------------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 47 ~~~LA~Gs~d---------G~I~iw~~~~-------------~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd 104 (1108)
..+||+|+.- |+|+||++-. ...+...+-.++|+.+|=.. ++|+++. ...|.||+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~--G~l~~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVR--GHLLSSQ-GQKIIVRK 1122 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEec--cEEEEcc-CcEEEEEE
Confidence 3589999742 9999998611 13345556778999887554 4566654 66799999
Q ss_pred c-CCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEe
Q 001279 105 L-ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1108)
Q Consensus 105 ~-~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1108)
+ +...++-..-..-++.-.+..-=.++++.|+--..|++..++.+..++....-.++. -.++++.
T Consensus 1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~--------------l~v~s~E 1188 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEP--------------LNVYSTE 1188 (1366)
T ss_pred eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCch--------------hhceeee
Confidence 9 444444333233344444444457899999988899999998765555432111111 2377777
Q ss_pred cccCCCCCEEEEEECCCeEEEEEcc
Q 001279 184 PHPNSSGNRVLIAYENALVILWDVS 208 (1108)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~lWdl~ 208 (1108)
|--....-.++++..++.|++|-..
T Consensus 1189 FLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1189 FLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 7432222346788888888887543
No 411
>PHA02713 hypothetical protein; Provisional
Probab=86.15 E-value=7.6 Score=47.47 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCCCcEEEEEecCC-----cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCc
Q 001279 492 HSVDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG 558 (1108)
Q Consensus 492 s~~~~llatgs~DG-----tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG 558 (1108)
.-++.+++.|+.++ +|..||..+..-..+..+... ...| ..+ .-++...+.|+.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-----r~~~----~~~--~~~g~IYviGG~~~ 409 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-----LSSY----GMC--VLDQYIYIIGGRTE 409 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-----cccc----cEE--EECCEEEEEeCCCc
Confidence 34677899998765 378888776654422211100 1111 112 23688888888654
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.14 E-value=34 Score=41.68 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=57.1
Q ss_pred CcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCc
Q 001279 603 NSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE 682 (1108)
Q Consensus 603 ~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~ 682 (1108)
-...+-+.-|.-++..++-+....+.|||..++.+.+... + ...+.|..+.|.+. |++
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~-f-~~~~~I~dLDWtst--------------------~d~ 86 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES-F-SEDDPIRDLDWTST--------------------PDG 86 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee-e-cCCCceeeceeeec--------------------CCC
Confidence 3456666677777777776667789999999998766543 2 46889999999965 667
Q ss_pred cEEEEEcCCccEEEEeC
Q 001279 683 EVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 683 ~~L~s~s~Dg~v~v~d~ 699 (1108)
+.+++.+-.+.|.++--
T Consensus 87 qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 87 QSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CEEEEEEcCcEEEEEEc
Confidence 88888888889888864
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.13 E-value=3.3 Score=51.84 Aligned_cols=148 Identities=12% Similarity=0.051 Sum_probs=90.3
Q ss_pred CceEEEEcCCCCEEEEEECCC--cEEEEecCCcce------EEeC------CCCCCEEEEEEeeCCC-EEEEEeCCCcEE
Q 001279 37 TASILAFDHIQRLLAIATLDG--RIKVIGGDGIEG------LLIS------PSQLPYKNLEFLQNQG-FLISITNDNEIQ 101 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG--~I~iw~~~~~~~------~~~~------~h~~~V~~l~fs~d~~-~L~S~s~d~~I~ 101 (1108)
.+..++..+|+.+.++-.... .|+.||+...+. ..+. ....-..++.|.|.-. ..+.+..|..|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 355677778887766654443 778888743221 1111 1223456777777532 245556788888
Q ss_pred EEEcCCCe-eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 102 VWSLESRS-LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 102 vWd~~s~~-~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
|.-+.... .+.++......||++|+|.++.+++|..+|++.-+....+ +. ..++.. +......|.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le---ik---~~ip~P--------p~~e~yrvl 247 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE---IK---SEIPEP--------PVEENYRVL 247 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc---ee---ecccCC--------CcCCCccee
Confidence 88775443 3344567788999999999999999999998765554321 11 112211 111136799
Q ss_pred EEecccCCCCCEEEEEECCCe
Q 001279 181 GVLPHPNSSGNRVLIAYENAL 201 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~ 201 (1108)
+|+|-- ... +++.|..++
T Consensus 248 ~v~Wl~--t~e-flvvy~n~t 265 (1405)
T KOG3630|consen 248 SVTWLS--TQE-FLVVYGNVT 265 (1405)
T ss_pred EEEEec--cee-EEEEecccc
Confidence 999932 333 666666654
No 414
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.04 E-value=35 Score=39.54 Aligned_cols=147 Identities=10% Similarity=-0.040 Sum_probs=82.0
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe-----ee
Q 001279 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-----LA 111 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~-----~~ 111 (1108)
...+..++++.++++|.....++-|+--... .....+....++.+.|.+++..++.+ .+|.| +|....++ -+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccce
Confidence 3445677899999888765444445543321 22334445678999999987666544 55554 34444442 12
Q ss_pred eeecCC---CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 112 CCLKWE---SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 112 ~~~~~~---~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
...... ..++++.+.+++..+++| ..|.+.... + ...+....+ . ... -....+.+.|.+
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D-~G~tW~~~~--~-~~~----------~~~~ly~v~f~~-- 380 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D-GGKSWKRDK--G-ADN----------IAANLYSVKFFD-- 380 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C-CCcceeEcc--c-cCC----------CCcceeEEEEcC--
Confidence 222222 358889998877766555 566553332 1 111212100 0 000 014578999844
Q ss_pred CCCEEEEEECCCeEEEE
Q 001279 189 SGNRVLIAYENALVILW 205 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lW 205 (1108)
+++ .++.+.+|.|.-|
T Consensus 381 ~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CCc-eEEEeCCcEEEEe
Confidence 344 8888889987554
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.68 E-value=21 Score=41.14 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=54.5
Q ss_pred CCceEEEEcCCCCEEEEEE-----------CCC-cEEEEec---CCc--ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC
Q 001279 36 ATASILAFDHIQRLLAIAT-----------LDG-RIKVIGG---DGI--EGLLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs-----------~dG-~I~iw~~---~~~--~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~ 98 (1108)
..+..|+|+++|++.++-. ..+ +|.++.- ++. +.......-.....|+|.+++ |+.++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 5677899999999887643 234 8888754 222 222333333346889999987 44444443
Q ss_pred cEEEEEcCC-------Ce-eeeeecC-----CCCeeEEEEecCCCEE
Q 001279 99 EIQVWSLES-------RS-LACCLKW-----ESNITAFSVISGSHFM 132 (1108)
Q Consensus 99 ~I~vWd~~s-------~~-~~~~~~~-----~~~Itsl~~~~~~~~l 132 (1108)
..++.|... .+ ++..+.. ......+.+.|++.+.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LY 138 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLY 138 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEE
Confidence 333445432 12 2222322 2347789999998643
No 416
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.44 E-value=39 Score=38.16 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=73.0
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCc------EEEEecCC-----cceE-----EeC-CCCC-------CEEEEEEeeCCC
Q 001279 34 IPATASILAFDHIQRLLAIATLDGR------IKVIGGDG-----IEGL-----LIS-PSQL-------PYKNLEFLQNQG 89 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~------I~iw~~~~-----~~~~-----~~~-~h~~-------~V~~l~fs~d~~ 89 (1108)
.-+..+.|+++|++..+.+-+++|. +..+.+.. ..+. .+. +... ....|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3467899999965555555566777 66555433 1111 111 1111 345888878888
Q ss_pred EEEEEeCC------CcEEEEEcCCCeeeeee----------------cCCCCeeEEEEecCCCEEEEEeCCC--------
Q 001279 90 FLISITND------NEIQVWSLESRSLACCL----------------KWESNITAFSVISGSHFMYIGDENG-------- 139 (1108)
Q Consensus 90 ~L~S~s~d------~~I~vWd~~s~~~~~~~----------------~~~~~Itsl~~~~~~~~l~vg~~dg-------- 139 (1108)
++++.=.+ ..|...+.. ++....+ .......+++++|+++.|++..+..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877667 778888876 5443322 1224688999999999887776543
Q ss_pred ------cEEEEEEecCC
Q 001279 140 ------LMSVIKYDADE 150 (1108)
Q Consensus 140 ------~V~vw~~d~~~ 150 (1108)
.++|+.++...
T Consensus 177 ~~~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKT 193 (326)
T ss_pred ccccCceEEEEEecCCC
Confidence 26788887654
No 417
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.86 E-value=61 Score=34.92 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred cCCCCcEEEEEecCC--cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCC
Q 001279 491 CHSVDRVYLAGYHDG--SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1108)
Q Consensus 491 ~s~~~~llatgs~DG--tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~ 568 (1108)
+..++.++-+.+.-| .||.+|..++.......+....+.- .|+.+ +++...-.=.++...+||..+-
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-------Git~~----~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-------GITIL----GDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-------EEEEE----TTEEEEEESSSSEEEEEETTTT
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-------eEEEE----CCEEEEEEecCCeEEEEccccc
Confidence 335666888877766 5999999999876555555444332 22222 2333333335778888887653
Q ss_pred CCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCC
Q 001279 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 648 (1108)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~ 648 (1108)
+.+..+. ..+.=+.|+ .|++.|...+....++++|..+-+..-.+... ...
T Consensus 121 -------------------------~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g 171 (264)
T PF05096_consen 121 -------------------------KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNG 171 (264)
T ss_dssp -------------------------EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETT
T ss_pred -------------------------eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECC
Confidence 2334442 245667777 56778888888889999999877665444331 222
Q ss_pred Cc---eEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceec
Q 001279 649 SP---IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1108)
Q Consensus 649 ~~---V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~ 706 (1108)
.+ +.-|+|- ++.+.+-.=....|..+|.++|.+++
T Consensus 172 ~pv~~LNELE~i-----------------------~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 172 RPVSNLNELEYI-----------------------NGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EE---EEEEEEE-----------------------TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred EECCCcEeEEEE-----------------------cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 33 4445665 14555555567788899999999875
No 418
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=84.54 E-value=10 Score=34.42 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=46.5
Q ss_pred ceEEEEeCCCC---CCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCC-CCCCCcceEEEEcCCCeEEE
Q 001279 327 GRLFVYGGDEI---GSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGA-TVGNHKADLFVLTSPGQLHF 402 (1108)
Q Consensus 327 ~~llv~gg~~~---~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~-~~~~~~~~l~vl~~~G~l~~ 402 (1108)
.-++.+||-.. ++.++++++. ..+ ...+....++.||..+..+.. ...+++.+++++++. ++++
T Consensus 29 ~~iiFsGGmp~~~ygdr~~vTV~~-g~~----------~~~ldf~s~VIDF~~i~~~~~~~e~~~P~alvVL~e~-eLVv 96 (105)
T PF08366_consen 29 PFIIFSGGMPRASYGDRHCVTVMQ-GKT----------HVVLDFTSRVIDFFTICESPWPNEFQDPYALVVLLEE-ELVV 96 (105)
T ss_pred cEEEEeCCccccccCCCceEEEEe-CCE----------EEEEEcCCceEEEEEEcCCCCccccCCCcEEEEEEcC-cEEE
Confidence 34455666543 3457888886 222 266778889999999988755 456788889998876 6666
Q ss_pred Eec
Q 001279 403 YDN 405 (1108)
Q Consensus 403 ~d~ 405 (1108)
+|.
T Consensus 97 IDL 99 (105)
T PF08366_consen 97 IDL 99 (105)
T ss_pred EEC
Confidence 774
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=84.26 E-value=30 Score=39.28 Aligned_cols=117 Identities=11% Similarity=-0.028 Sum_probs=64.1
Q ss_pred CCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEE-eecCcCEEEEEEcCC
Q 001279 536 RAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSS 614 (1108)
Q Consensus 536 ~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~h~~~Vtslafspd 614 (1108)
...++++.+.++++.+++| ..|.+++=.-+.. ..+.....- ..-...+++++|.++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G----------------------~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL----------------------ESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCC----------------------CccccccCCccccccceeeEEEcCC
Confidence 3578999999999887765 4576542111111 111100000 001235789999998
Q ss_pred CCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccE
Q 001279 615 GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKI 694 (1108)
Q Consensus 615 g~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v 694 (1108)
+.++++|. +|.|. ....++.--.......+.+.....+.|.. ...++..+..|.|
T Consensus 271 ~~~~~~G~-~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~G~~G~i 325 (334)
T PRK13684 271 GEIWAGGG-NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-----------------------PEKGFVLGQRGVL 325 (334)
T ss_pred CCEEEEcC-CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-----------------------CCceEEECCCceE
Confidence 88777664 56543 33333322111111122334566666662 3346788899999
Q ss_pred EEEeCC
Q 001279 695 SIVGGS 700 (1108)
Q Consensus 695 ~v~d~~ 700 (1108)
..++..
T Consensus 326 l~~~~~ 331 (334)
T PRK13684 326 LRYVGS 331 (334)
T ss_pred EEecCC
Confidence 888764
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.00 E-value=2.8 Score=51.03 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=62.4
Q ss_pred CcEEEEeCC--CCceeeEeeeccccceeeccCCCCCeEEEEEEe---CCCeEEEEecCceEEEEEecCCCCCcccccccc
Q 001279 505 GSVRIWDAT--YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF---INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 579 (1108)
Q Consensus 505 GtVriWd~~--~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~---d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~ 579 (1108)
|...+||+. .+.+++-..++. ...-...+.-+.||| +.-++..+..+|.|++.+++.... ..|...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~------~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---~l~rsH 223 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTP------ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---SLFRSH 223 (1283)
T ss_pred hhhheeehHhhccccccceEEee------cCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---HHHHhc
Confidence 667889865 344332222221 111223456666665 567888888999999999987532 222222
Q ss_pred CccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001279 580 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1108)
Q Consensus 580 ~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~ 632 (1108)
+.+.+..-.-..|+..+. ..||||..+|....||.|+.|.+
T Consensus 224 s~~~~d~a~~~~g~~~l~------------~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 224 SQRVTDMAFFAEGVLKLA------------SLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred CCCcccHHHHhhchhhhe------------eeCCCCcEEEEeecCCccceeee
Confidence 222111111122222221 17999999999999999999976
No 421
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.98 E-value=22 Score=40.88 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=78.5
Q ss_pred CCCCCceEEEEcCCCCEEEEEECC------CcEEEEecCCcceEEeCCCCC----CEEEEEEeeCCCEEEEEeC------
Q 001279 33 GIPATASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISPSQL----PYKNLEFLQNQGFLISITN------ 96 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~d------G~I~iw~~~~~~~~~~~~h~~----~V~~l~fs~d~~~L~S~s~------ 96 (1108)
..|+++.|+ |+|++++++-.| |.+.++|.++.++.-.-+... --..+-+.|....++|..-
T Consensus 130 s~PHT~Hcl---p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~ 206 (461)
T PF05694_consen 130 SRPHTVHCL---PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMF 206 (461)
T ss_dssp EEEEEEEE----SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHH
T ss_pred CCCceeeec---CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhc
Confidence 445566565 478777764332 667888888766664333221 1234445666666776542
Q ss_pred --------------CCcEEEEEcCCCeeeeeecCCC---CeeEEEEe--cCCCEEEEEeCCCcEEEEEEec-CCCeeee-
Q 001279 97 --------------DNEIQVWSLESRSLACCLKWES---NITAFSVI--SGSHFMYIGDENGLMSVIKYDA-DEGKLFQ- 155 (1108)
Q Consensus 97 --------------d~~I~vWd~~s~~~~~~~~~~~---~Itsl~~~--~~~~~l~vg~~dg~V~vw~~d~-~~~~l~~- 155 (1108)
.++|.|||+.+++++.++.... ...-+.|. |...+-++|+.-.+ .||.+-. ++++...
T Consensus 207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss-~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 207 EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSS-SIWRFYKDDDGEWAAE 285 (461)
T ss_dssp TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--E-EEEEEEE-ETTEEEEE
T ss_pred ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccc-eEEEEEEcCCCCeeee
Confidence 3679999999999999986542 35555665 55677777765221 3444322 2333221
Q ss_pred eceeecccccccccCCCC------CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 156 LPYNISADALSEKAGFPL------LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~------~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
.-..++.... +....+. .-+.-|+.|..+.. +.-+.++...+|.|+.||++.-
T Consensus 286 kVi~ip~~~v-~~~~lp~ml~~~~~~P~LitDI~iSlD-DrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 286 KVIDIPAKKV-EGWILPEMLKPFGAVPPLITDILISLD-DRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEE--EE---SS---GGGGGG-EE------EEE-TT-S-EEEEEETTTTEEEEEE-SST
T ss_pred EEEECCCccc-CcccccccccccccCCCceEeEEEccC-CCEEEEEcccCCcEEEEecCCC
Confidence 1122332210 0000000 00244788888663 3333457778999999999874
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=14 Score=44.75 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=103.8
Q ss_pred CcccccccCCcccCCCccccCCCCcEEEEEecC----------CcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEE
Q 001279 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD----------GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVST 541 (1108)
Q Consensus 472 ~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~D----------GtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~ 541 (1108)
..+.||++.-. ....+..|.+.-||...++ -.|+|+++.+..+. ..+-.|. .+-.
T Consensus 24 y~~~W~l~dl~---~~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~-----------~~~w~~~-~lI~ 88 (829)
T KOG2280|consen 24 YFMKWPLTDLY---YVYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLG-----------RILWKHG-ELIG 88 (829)
T ss_pred cccCCcccccc---eeEEEecccCCceEEEecccccccccccceeEEEEeccccchH-----------HHHhcCC-Ceee
Confidence 46788874311 1222555666666666555 12777887766654 2233444 6778
Q ss_pred EEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEE
Q 001279 542 LSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG 621 (1108)
Q Consensus 542 lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavG 621 (1108)
+.|+.+. .|++...+|+|+||++.....+.+. .-+......|..+.|..+| +|+=
T Consensus 89 mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~s----------------------vg~e~~~~~I~ec~~f~~G--Vavl 143 (829)
T KOG2280|consen 89 MGWSDDE-ELICVQKDGTVHVYGLLGEFIESNS----------------------VGFESQMSDIVECRFFHNG--VAVL 143 (829)
T ss_pred ecccCCc-eEEEEeccceEEEeecchhhhcccc----------------------cccccccCceeEEEEecCc--eEEE
Confidence 9999654 5666788999999999876332110 0011122334444555555 4444
Q ss_pred eCCCeEEEEEccCceEEEEee-------------cCCCCCCceEEEEee-ec----------ccCccccCCCCCCCCCCC
Q 001279 622 FECGRVAVLDMNLLSVLFFTD-------------DISGSSSPIISMTWT-EF----------KNTHSLAKNPNHSEREVP 677 (1108)
Q Consensus 622 s~dG~V~vwd~~~~~~~~~~~-------------~~~~h~~~V~~l~fs-~~----------~~~~~~~~~p~~~~~~~~ 677 (1108)
..+|.|.+.+-.....+.... .+..|.....-+... .. .....+...|..+-.+.+
T Consensus 144 t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~ 223 (829)
T KOG2280|consen 144 TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKIS 223 (829)
T ss_pred ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEE
Confidence 444444443321111111000 111222222211111 00 001112233334455666
Q ss_pred CCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 678 VNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 678 ~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
.+|...+|+--+.+|.|.+.+.+..+.++..
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 7788999999999999999998877776654
No 423
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.86 E-value=16 Score=37.83 Aligned_cols=117 Identities=17% Similarity=0.346 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEcC--CCeeeeeecCCCCeeEEEEecCCCEEEEEeCCC------cEEEE---EEecCCCeeeeec
Q 001279 89 GFLISITNDNEIQVWSLE--SRSLACCLKWESNITAFSVISGSHFMYIGDENG------LMSVI---KYDADEGKLFQLP 157 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~--s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg------~V~vw---~~d~~~~~l~~~~ 157 (1108)
..|+.+...+.|.+|++. ..+++..+.--+.|..+.++..|+|+++=-++. .+|++ .....+.....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~-- 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR-- 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE--
Confidence 556665778889999998 335677777779999999999999999875432 34443 22211222221
Q ss_pred eeeccccccc-----------ccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE
Q 001279 158 YNISADALSE-----------KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1108)
Q Consensus 158 ~~i~~~~~~~-----------~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~ 212 (1108)
-++-+|.... .+..|. ..++.+++--|. .|+ |++|+.+.. .||.+.....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl--~~~p~ciaCC~~-tG~-LlVg~~~~l-~lf~l~~~~~ 167 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPL--SEPPLCIACCPV-TGN-LLVGCGNKL-VLFTLKYQTI 167 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecC--CCCCCEEEecCC-CCC-EEEEcCCEE-EEEEEEEEEE
Confidence 2344432111 111121 245777777775 677 777776654 7888765543
No 424
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=83.65 E-value=32 Score=41.71 Aligned_cols=123 Identities=14% Similarity=0.190 Sum_probs=74.7
Q ss_pred eeCCCCCceEEEEcCCCC---EEEEEECCCcEEEEecCCcceEEeC---C----------CC-CCE--------------
Q 001279 31 HYGIPATASILAFDHIQR---LLAIATLDGRIKVIGGDGIEGLLIS---P----------SQ-LPY-------------- 79 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~---~LA~Gs~dG~I~iw~~~~~~~~~~~---~----------h~-~~V-------------- 79 (1108)
.|..+.....+.+..+++ +|+.++.+|.+++.|..+.+.+... + .. .++
T Consensus 296 D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~ 375 (527)
T TIGR03075 296 DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGK 375 (527)
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCC
Confidence 355566666677766777 8999999999999999765553110 0 00 011
Q ss_pred --------------EEEEEeeCCCEEEEEeC---------------------------------CCcEEEEEcCCCeeee
Q 001279 80 --------------KNLEFLQNQGFLISITN---------------------------------DNEIQVWSLESRSLAC 112 (1108)
Q Consensus 80 --------------~~l~fs~d~~~L~S~s~---------------------------------d~~I~vWd~~s~~~~~ 112 (1108)
..++|.|+.++++.-.. -+.|.-||+.+++++.
T Consensus 376 ~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W 455 (527)
T TIGR03075 376 PVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVW 455 (527)
T ss_pred eeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceee
Confidence 11445554444433222 2458889999999888
Q ss_pred eecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001279 113 CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 113 ~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~ 155 (1108)
......+...-.+.-.+.++++++.+|.++.+| ..+|+.+-
T Consensus 456 ~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D--~~TGe~lw 496 (527)
T TIGR03075 456 EHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFD--AKTGEELW 496 (527)
T ss_pred EecCCCCCCCcceEECCcEEEEECCCCeEEEEE--CCCCCEeE
Confidence 775443322212223556788898899776655 55576663
No 425
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=83.39 E-value=90 Score=35.67 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=46.6
Q ss_pred CEEEEEEeeCCCEEEEEeC--CC---cEEEEEcCCCeeeeee-----cCCCCeeEEEEe-cC-CCEEEEEeCCCcEEEEE
Q 001279 78 PYKNLEFLQNQGFLISITN--DN---EIQVWSLESRSLACCL-----KWESNITAFSVI-SG-SHFMYIGDENGLMSVIK 145 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~--d~---~I~vWd~~s~~~~~~~-----~~~~~Itsl~~~-~~-~~~l~vg~~dg~V~vw~ 145 (1108)
-+..+.|++++..|+..-. +. .+.+.|..+++..... .+-..-..+.+. ++ ..++.+...+|--+|+.
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 4778889998874444332 22 2677788776443222 122333455554 44 45666777889888888
Q ss_pred EecCCCeeee
Q 001279 146 YDADEGKLFQ 155 (1108)
Q Consensus 146 ~d~~~~~l~~ 155 (1108)
++...+...+
T Consensus 265 ~~~~~~~~~~ 274 (353)
T PF00930_consen 265 YDLDGGKPRQ 274 (353)
T ss_dssp EETTSSEEEE
T ss_pred Ecccccceec
Confidence 8877666443
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.81 E-value=40 Score=35.11 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=64.2
Q ss_pred EEEEEEeCCCeEE-EEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEE
Q 001279 540 STLSFCFINSSLA-VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL 618 (1108)
Q Consensus 540 t~lafs~d~~~La-sg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~L 618 (1108)
..|+|+.+.+.+. +-+.+-+|.-|+.+-...... +++++.++.... +. -.-.--.+++..+|++.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s------nr~~i~dlrk~~---~~-----e~~~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS------NRKVIFDLRKSQ---PF-----ESLEPDGMTIDTEGNLY 226 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCccccc------CcceeEEeccCC---Cc-----CCCCCCcceEccCCcEE
Confidence 4688888776554 455577888888654322111 111111111100 00 01112235567789999
Q ss_pred EEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEee
Q 001279 619 AVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1108)
Q Consensus 619 avGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs 657 (1108)
++....|+|..+|..+++++..... ....|++++|.
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFg 262 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFG 262 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEec
Confidence 9999999999999999999987765 57889999998
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.63 E-value=1.1e+02 Score=37.37 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=49.4
Q ss_pred ecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCC
Q 001279 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNP 680 (1108)
Q Consensus 601 ~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p 680 (1108)
...+.+-.+-|+.+..+| +-..||+|.||++.+...-...--.....+.|..+.|...
T Consensus 81 w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~--------------------- 138 (829)
T KOG2280|consen 81 WKHGELIGMGWSDDEELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN--------------------- 138 (829)
T ss_pred hcCCCeeeecccCCceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEecC---------------------
Confidence 344588899999887655 4568999999999876554210011123344555655521
Q ss_pred CccEEEEEcCCccEEEEeCCC
Q 001279 681 AEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 681 ~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
| +++.+.+|.|.+.....
T Consensus 139 -G--Vavlt~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 139 -G--VAVLTVSGQVILINGVE 156 (829)
T ss_pred -c--eEEEecCCcEEEEcCCC
Confidence 2 78888889988887654
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=82.17 E-value=45 Score=37.80 Aligned_cols=154 Identities=6% Similarity=-0.009 Sum_probs=83.9
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEE-EEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCee
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIK-VIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~-iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~ 110 (1108)
+....+..++++|++.++++|.. |.|. .++-.+.... ....-...+..+.+.+++..++ ++..+.+.+=..+.+.-
T Consensus 170 ~~~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~-vg~~G~~~~~s~d~G~s 247 (334)
T PRK13684 170 DAAGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWM-LARGGQIRFNDPDDLES 247 (334)
T ss_pred CCcceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEE-EecCCEEEEccCCCCCc
Confidence 33556788999999988888764 5443 3332222222 2233445889999999876554 45567664323333332
Q ss_pred eeeecC-----CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 111 ACCLKW-----ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 111 ~~~~~~-----~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
-..... ...++++.+.+++..+++| .+|.|. ...+. ..+... ++... .-....+.+.|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~-G~tW~~----~~~~~---------~~~~~~~~~~~~ 311 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG-GKTWEK----DPVGE---------EVPSNFYKIVFL 311 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC-CCCCeE----CCcCC---------CCCcceEEEEEe
Confidence 222211 1357888888877755554 566542 22221 112111 11000 001347777774
Q ss_pred cCCCCCEEEEEECCCeEEEEEc
Q 001279 186 PNSSGNRVLIAYENALVILWDV 207 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg~V~lWdl 207 (1108)
. ++. .++.+..|.|..|+-
T Consensus 312 ~--~~~-~~~~G~~G~il~~~~ 330 (334)
T PRK13684 312 D--PEK-GFVLGQRGVLLRYVG 330 (334)
T ss_pred C--CCc-eEEECCCceEEEecC
Confidence 3 344 788888898877753
No 429
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.08 E-value=5.8 Score=48.56 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=46.6
Q ss_pred CCCCEEEEEECCCcEEEEecCC----cce---EEeCCC--------------------CCCEEEEEEee----CCCEEEE
Q 001279 45 HIQRLLAIATLDGRIKVIGGDG----IEG---LLISPS--------------------QLPYKNLEFLQ----NQGFLIS 93 (1108)
Q Consensus 45 p~~~~LA~Gs~dG~I~iw~~~~----~~~---~~~~~h--------------------~~~V~~l~fs~----d~~~L~S 93 (1108)
++...++++..||.+....... ... .....+ ...+..+.++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4788999999999998887643 111 111111 23455666655 6789999
Q ss_pred EeCCCcEEEEEcCCCeeeeeec
Q 001279 94 ITNDNEIQVWSLESRSLACCLK 115 (1108)
Q Consensus 94 ~s~d~~I~vWd~~s~~~~~~~~ 115 (1108)
.+.|+.||+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977663
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=81.97 E-value=19 Score=43.83 Aligned_cols=75 Identities=8% Similarity=0.195 Sum_probs=56.0
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeC--CCCCCEEEEEEe--eCCCEEEEEeCCCcEEEEEc
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS--PSQLPYKNLEFL--QNQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~--~h~~~V~~l~fs--~d~~~L~S~s~d~~I~vWd~ 105 (1108)
++.|+. .++.+.-+..++..++-+....+.|||......-... ...++|.+|.|. |++..+++++-.+.|.++--
T Consensus 25 ~~T~i~-~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGIS-NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCC-CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344555 4566666777888888777788999999766543322 447899999995 68899999999999988763
No 431
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.80 E-value=7.7 Score=40.93 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=47.6
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCcceEEeC---------------CCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 43 FDHIQRLLAIATLDGRIKVIGGDGIEGLLIS---------------PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 43 ~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~---------------~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
+...+.+|.+-+.+|.+++||+......+.. .....|+.+.+..+|.-|++.+ +|....||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 5567899999999999999999776554322 2445788888887776666665 46778887654
Q ss_pred C
Q 001279 108 R 108 (1108)
Q Consensus 108 ~ 108 (1108)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 432
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.61 E-value=23 Score=38.74 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=77.1
Q ss_pred cCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEe------CCCeEEE
Q 001279 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF------ECGRVAV 629 (1108)
Q Consensus 556 ~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs------~dG~V~v 629 (1108)
.+..|++|+.... ++...-....+.|++|.|..+.++++.|. ....+..
T Consensus 14 ~C~~lC~yd~~~~-------------------------qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~ 68 (281)
T PF12768_consen 14 PCPGLCLYDTDNS-------------------------QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLAT 68 (281)
T ss_pred CCCEEEEEECCCC-------------------------EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEE
Confidence 3567999998775 23333344678999999998888888886 5678999
Q ss_pred EEccCceEEEEeecC-CCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEc-C--CccEEEEeCCCccee
Q 001279 630 LDMNLLSVLFFTDDI-SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-K--DAKISIVGGSSENMI 705 (1108)
Q Consensus 630 wd~~~~~~~~~~~~~-~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s-~--Dg~v~v~d~~~g~~l 705 (1108)
||..+....-..... ...+++|..+.+..... ..+.+.|. . +..|..||...-.-+
T Consensus 69 yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~--------------------~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 69 YDFKNQTWSSLGGGSSNSIPGPVTALTFISNDG--------------------SNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EecCCCeeeecCCcccccCCCcEEEEEeeccCC--------------------ceEEEeceecCCCceEEEEcCCceEec
Confidence 999988764111111 12468899988863311 22333333 2 345788888765555
Q ss_pred cCCCCcccccceeeEEEEecC
Q 001279 706 SSSPWHLKKKVIAISMEVIAE 726 (1108)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~ 726 (1108)
...... ..+.+-.+.++..
T Consensus 129 ~~~~~~--~~t~I~~l~~~~l 147 (281)
T PF12768_consen 129 GSDILG--SGTTIRGLQVLPL 147 (281)
T ss_pred cccccC--CCCEEEEEEEEec
Confidence 542122 2455666666643
No 433
>PRK10115 protease 2; Provisional
Probab=81.30 E-value=1.6e+02 Score=37.11 Aligned_cols=110 Identities=6% Similarity=-0.006 Sum_probs=63.3
Q ss_pred CCceEEEEcCCCCEEEEEECC-----CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC------CcEEEEE
Q 001279 36 ATASILAFDHIQRLLAIATLD-----GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND------NEIQVWS 104 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~d-----G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d------~~I~vWd 104 (1108)
-.+..+.++|++++||.+... -.|++.++.+...+...-.... ..++|++|+..|+-...+ ..|..|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 446678899999999987544 4577888865443211111112 459999988766555432 3588888
Q ss_pred cCCC--eeeeeecC-CCCee-EEEEecCCCEEEEEeCC---CcEEEEEE
Q 001279 105 LESR--SLACCLKW-ESNIT-AFSVISGSHFMYIGDEN---GLMSVIKY 146 (1108)
Q Consensus 105 ~~s~--~~~~~~~~-~~~It-sl~~~~~~~~l~vg~~d---g~V~vw~~ 146 (1108)
+.++ +-...+.. ..... ....+.+++++++.+.+ +.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8887 22222321 22222 33334477776665543 34555553
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.74 E-value=94 Score=34.08 Aligned_cols=120 Identities=15% Similarity=0.256 Sum_probs=75.3
Q ss_pred CccccccceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecC-----Ccc---eEEeCC-----CCCCEEEEEEe
Q 001279 19 LTAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-----GIE---GLLISP-----SQLPYKNLEFL 85 (1108)
Q Consensus 19 l~~~~~~~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~-----~~~---~~~~~~-----h~~~V~~l~fs 85 (1108)
..+..+|+.+.+-.| |+|+|.+.+-+.....+...+|+.+ +.. ++.+.. ..+..+.+.|.
T Consensus 13 ~~A~~tDp~L~N~WG-------ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN 85 (336)
T TIGR03118 13 HAAQIVDPGLRNAWG-------LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFN 85 (336)
T ss_pred ccccccCccccccce-------eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEe
Confidence 456778888888887 8999999988888888999999986 222 222221 23456777776
Q ss_pred eCCC------------EEEEEeCCCcEEEEEcCCCee-----eeee--cCCCCe-e--EEEEecCCCEEEEEe-CCCcEE
Q 001279 86 QNQG------------FLISITNDNEIQVWSLESRSL-----ACCL--KWESNI-T--AFSVISGSHFMYIGD-ENGLMS 142 (1108)
Q Consensus 86 ~d~~------------~L~S~s~d~~I~vWd~~s~~~-----~~~~--~~~~~I-t--sl~~~~~~~~l~vg~-~dg~V~ 142 (1108)
.... .++-++.||+|.-|+-.-... ...+ +..+.| . +++-...+++|+... .++.|.
T Consensus 86 ~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~ID 165 (336)
T TIGR03118 86 GSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRID 165 (336)
T ss_pred CCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceE
Confidence 4333 357788999999998532211 1111 111222 2 333334467777665 567777
Q ss_pred EEE
Q 001279 143 VIK 145 (1108)
Q Consensus 143 vw~ 145 (1108)
|+|
T Consensus 166 VFd 168 (336)
T TIGR03118 166 VFK 168 (336)
T ss_pred Eec
Confidence 765
No 435
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.36 E-value=5.1 Score=40.59 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=27.6
Q ss_pred ceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
.|.+++|+|.+.. ...+.+|++.+.++.|.+|...
T Consensus 87 ~vv~~aWSP~Gl~----------------~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLG----------------PNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCC----------------CCCceEEEEEcCCCeEEEEecC
Confidence 6778888876544 1347899999999999999865
No 436
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.24 E-value=62 Score=35.53 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=68.8
Q ss_pred cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEe------cCceEEEEEecCCCCCcccccccc
Q 001279 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN------EFGLVYIYNLNGSLDAKNFLFVLE 579 (1108)
Q Consensus 506 tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~------~dG~V~lw~l~~~~~~~~~~~~~~ 579 (1108)
.|++||.....-.. --.+-.+.|++|.|..++++++.|. ....+..|++....-.
T Consensus 17 ~lC~yd~~~~qW~~-----------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-------- 77 (281)
T PF12768_consen 17 GLCLYDTDNSQWSS-----------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-------- 77 (281)
T ss_pred EEEEEECCCCEeec-----------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee--------
Confidence 48999988766441 0112345799999997777877775 3456777777765210
Q ss_pred CccceeecccCCcceEEEE-E-eecCcCEEEEEEcC-C-CCEEEEEe-CCCeEEEEEccCceEEEEeecCCCCCCceEEE
Q 001279 580 TKSEVHALPEGKISLCRAV-F-SLVNSPVRALQFTS-S-GAKLAVGF-ECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1108)
Q Consensus 580 ~~~~~~~~~~~~g~~~~~~-~-~~h~~~Vtslafsp-d-g~~LavGs-~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l 654 (1108)
.+.. . ...+++|+++.+.. | .++.+.|. .+|...|....+.+...-.....+....|..+
T Consensus 78 ---------------~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l 142 (281)
T PF12768_consen 78 ---------------SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGL 142 (281)
T ss_pred ---------------ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEE
Confidence 0000 0 23468899998854 2 24555554 45544444444433321111123346788999
Q ss_pred Eeeec
Q 001279 655 TWTEF 659 (1108)
Q Consensus 655 ~fs~~ 659 (1108)
++-+.
T Consensus 143 ~~~~l 147 (281)
T PF12768_consen 143 QVLPL 147 (281)
T ss_pred EEEec
Confidence 88865
No 437
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=80.07 E-value=15 Score=42.47 Aligned_cols=108 Identities=14% Similarity=0.104 Sum_probs=70.0
Q ss_pred EEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCC
Q 001279 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1108)
Q Consensus 595 ~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~ 674 (1108)
+...+......+.+++.+|+++++|+.+.-|.|.|+|+.++.++ +.++|..+. .+.|-..........++ +...
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv---rmWKGYRdA--qc~wi~~~~~~~~~~~~-~~~~ 372 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV---RMWKGYRDA--QCGWIEVPEEGDRDRSN-SNSP 372 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh---hhhccCccc--eEEEEEeeccccccccc-cccc
Confidence 45556667788999999999999999999999999999999888 567776663 23333221111000000 0011
Q ss_pred CCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 675 EVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 675 ~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
+........+++=+-.-|.|-||+..+|.-+...
T Consensus 373 ~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 373 KSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred CCCCcceEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 1111222344556777899999999988877654
No 438
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=80.06 E-value=1.2e+02 Score=34.76 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=42.1
Q ss_pred CcceEEeCCCCCCEE-----EEEEeeCCCEEEEEeC-C--CcEEEEEcCCCeeeeeecCCCC-eeEEEEecCCCEEEEEe
Q 001279 66 GIEGLLISPSQLPYK-----NLEFLQNQGFLISITN-D--NEIQVWSLESRSLACCLKWESN-ITAFSVISGSHFMYIGD 136 (1108)
Q Consensus 66 ~~~~~~~~~h~~~V~-----~l~fs~d~~~L~S~s~-d--~~I~vWd~~s~~~~~~~~~~~~-Itsl~~~~~~~~l~vg~ 136 (1108)
+.+++.+..+.+... .=+|.+||.+|+-++. | ..+.+-|+.+++........+. .....++++++.++-..
T Consensus 20 G~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 20 GHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE
T ss_pred CceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE
Confidence 344555554433322 2356778877766665 4 4588889999988877754422 22455667777765433
Q ss_pred CCCcEEEEEEecCCCeeeeeceeeccc
Q 001279 137 ENGLMSVIKYDADEGKLFQLPYNISAD 163 (1108)
Q Consensus 137 ~dg~V~vw~~d~~~~~l~~~~~~i~~~ 163 (1108)
.+..| +.++..+.+... -|.++..
T Consensus 100 ~~~~l--~~vdL~T~e~~~-vy~~p~~ 123 (386)
T PF14583_consen 100 NGRSL--RRVDLDTLEERV-VYEVPDD 123 (386)
T ss_dssp TTTEE--EEEETTT--EEE-EEE--TT
T ss_pred CCCeE--EEEECCcCcEEE-EEECCcc
Confidence 33444 555544444333 2778754
No 439
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=79.36 E-value=1.2e+02 Score=34.59 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=43.0
Q ss_pred EEcCCCCEEEEEE-CCCc--EEEEecCCcceEEeCCCCCC-EEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCC
Q 001279 42 AFDHIQRLLAIAT-LDGR--IKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE 117 (1108)
Q Consensus 42 a~sp~~~~LA~Gs-~dG~--I~iw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~ 117 (1108)
+|.++|+.|..++ .||. +++.|+.+.+..-+..+.+. .-....+++...|+-+..+..|+--|+++++....+..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 4678886655544 4555 55557777777655554422 224666788888888877888999999998766555444
Q ss_pred C
Q 001279 118 S 118 (1108)
Q Consensus 118 ~ 118 (1108)
.
T Consensus 122 ~ 122 (386)
T PF14583_consen 122 D 122 (386)
T ss_dssp T
T ss_pred c
Confidence 3
No 440
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=78.71 E-value=54 Score=41.50 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=89.1
Q ss_pred ceEEEEcC--CCCEEEEEEC-----------CCcEEEEec-CCcceE-EeC--CCCCCEEEEEEeeCCCEEEEEeCCCcE
Q 001279 38 ASILAFDH--IQRLLAIATL-----------DGRIKVIGG-DGIEGL-LIS--PSQLPYKNLEFLQNQGFLISITNDNEI 100 (1108)
Q Consensus 38 is~la~sp--~~~~LA~Gs~-----------dG~I~iw~~-~~~~~~-~~~--~h~~~V~~l~fs~d~~~L~S~s~d~~I 100 (1108)
+.+..|+. .+.++++|.. +|.++.|.+ ...+.+ +++ +-.++|- +..|.+++++++ ..+.+
T Consensus 880 v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~Lag-vG~~l 956 (1205)
T KOG1898|consen 880 VCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAG-VGRFL 956 (1205)
T ss_pred eeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEe-cccEE
Confidence 44555654 3336666652 366888876 222222 222 2233444 446666655544 57899
Q ss_pred EEEEcCCCeeeeee--cC-CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001279 101 QVWSLESRSLACCL--KW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1108)
Q Consensus 101 ~vWd~~s~~~~~~~--~~-~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1108)
+++|+-.++++... ++ +..|+.+.+ ...++++|+.--+|..+.|..++..+.. +-.+.. +-
T Consensus 957 ~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~----fadD~~----------pR 1020 (1205)
T KOG1898|consen 957 RLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV----FADDPV----------PR 1020 (1205)
T ss_pred EEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE----EeCCCc----------cc
Confidence 99999988777544 23 456766665 4678999998888999999888777774 222211 13
Q ss_pred CeEEEecccCCCCCEEEEEECCCeEEE
Q 001279 178 PVVGVLPHPNSSGNRVLIAYENALVIL 204 (1108)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~l 204 (1108)
+|+++.+ .+.++ ++.|..-|.+.+
T Consensus 1021 ~Vt~~~~--lD~~t-vagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1021 HVTALEL--LDYDT-VAGADRFGNIAV 1044 (1205)
T ss_pred eeeEEEE--ecCCc-eeeccccCcEEE
Confidence 5777766 43454 777777676533
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.51 E-value=39 Score=39.24 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=55.8
Q ss_pred CeeEEEEecCCCEEEEEeCCCcEEEEEEec--------CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC--
Q 001279 119 NITAFSVISGSHFMYIGDENGLMSVIKYDA--------DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-- 188 (1108)
Q Consensus 119 ~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~--------~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-- 188 (1108)
.|..+..++.|..++..+.+|.+ |..+.. ++|+....-.+++ +...++... ..-.+..++|||..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~-vMeLp~rwG~~s~~eDgk~~v~CRt~~---i~~~~ftss-~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLM-VMELPKRWGKNSEFEDGKSTVNCRTTP---VAERFFTSS-TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeE-EEEchhhcCccceecCCCceEEEEeec---ccceeeccC-CceeeeeccccCCccC
Confidence 46677788999999999999954 433311 2232221101111 112222222 22457788999975
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFV 215 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~ 215 (1108)
|. +|++-.+|.+|||||++..+-++.
T Consensus 180 D~-hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 180 DP-HLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred Cc-eEEEEecCcEEEEEecCCcchhhc
Confidence 44 499999999999999998765543
No 442
>PHA02713 hypothetical protein; Provisional
Probab=78.45 E-value=70 Score=39.14 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=17.2
Q ss_pred CCCCEEEEEEccC--cEEEEecCCC
Q 001279 260 SSGSILAVGYIDG--DILLWNTSTT 282 (1108)
Q Consensus 260 pdg~~l~sg~~DG--~I~lWd~~~~ 282 (1108)
-+|...++|+.|| ++..||..+.
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ECCEEEEEeeecceeehhhcCcccc
Confidence 4788889999888 6666776655
No 443
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=78.09 E-value=36 Score=41.67 Aligned_cols=110 Identities=17% Similarity=0.078 Sum_probs=59.7
Q ss_pred CCCCcEEEEEecCCc-----EEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEE-EeCCCeEEEEecCce------
Q 001279 492 HSVDRVYLAGYHDGS-----VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSF-CFINSSLAVGNEFGL------ 559 (1108)
Q Consensus 492 s~~~~llatgs~DGt-----VriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~laf-s~d~~~Lasg~~dG~------ 559 (1108)
.-++.++|.|+.||. |..||..+........ ........+. .-+|...++|+.++.
T Consensus 378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~------------m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s 445 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP------------MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS 445 (571)
T ss_pred EECCEEEEEeccccccccccEEEecCCCCcccccCC------------CCcceeeeEEEEECCEEEEEcCcCCCccccce
Confidence 346679999999986 6778877666442111 1112222222 236788888886654
Q ss_pred EEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCe-----EEEEEccC
Q 001279 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR-----VAVLDMNL 634 (1108)
Q Consensus 560 V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~-----V~vwd~~~ 634 (1108)
|..||..++.= ..+........... ...-++.+.|+|+.||. |..||..+
T Consensus 446 ve~YDP~t~~W-----------------------~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 446 VECYDPETNTW-----------------------TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEEcCCCCce-----------------------eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 45555544310 00000000000011 22235778899998873 77788887
Q ss_pred ceEE
Q 001279 635 LSVL 638 (1108)
Q Consensus 635 ~~~~ 638 (1108)
.+..
T Consensus 501 ~~W~ 504 (571)
T KOG4441|consen 501 NQWT 504 (571)
T ss_pred Ccee
Confidence 7665
No 444
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.32 E-value=52 Score=42.96 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=28.2
Q ss_pred ecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 114 ~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
++.+.....++|++...++++|...|.|+++...
T Consensus 32 ~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 32 HGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred cCCCCCCcceeeccccceEEEEEecccEEEeccc
Confidence 3455667889999999999999999999887654
No 445
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=76.59 E-value=1.1e+02 Score=36.58 Aligned_cols=151 Identities=11% Similarity=0.160 Sum_probs=85.1
Q ss_pred CCceEEEEcCCCCEEEEEE--CCCcEEEEecCCcceEEeCCCCCCEEEEEEeeC----CCEEEEEeCCCcEEEEEcC---
Q 001279 36 ATASILAFDHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQN----QGFLISITNDNEIQVWSLE--- 106 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs--~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d----~~~L~S~s~d~~I~vWd~~--- 106 (1108)
+.+.-+||.--.+++.+.- .+|.++. ....++-..+| |..|.|.|- -..|+++.....|.||-+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kf---Gds~viGqFEh---V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKF---GDSKVIGQFEH---VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCcccc---CCccEeeccce---eeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 4456678874333443331 1222221 11223333344 888999884 4578899999999999875
Q ss_pred --CCeeeeee----c--CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001279 107 --SRSLACCL----K--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1108)
Q Consensus 107 --s~~~~~~~----~--~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1108)
+.+.+.+. . .+----.+.|+|....|++=.....--+.++..+...+. ..+.+. +-
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk---aDi~~~-------------G~ 157 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK---ADIKTS-------------GL 157 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE---EeccCC-------------ce
Confidence 22333222 1 112234567888888777665433212334433333332 224332 66
Q ss_pred eEEEecccCCCCCEEEEEECCC-eEEEEEccCC
Q 001279 179 VVGVLPHPNSSGNRVLIAYENA-LVILWDVSEA 210 (1108)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg-~V~lWdl~~~ 210 (1108)
|.|-+|.+ ||.+|+++-.+. .-.+||-..+
T Consensus 158 IhCACWT~--DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 158 IHCACWTK--DGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEEecC--cCCEEEEEeCCeEEEEEecCchh
Confidence 99999955 899988877664 3468885443
No 446
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=76.05 E-value=6.3 Score=29.28 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCC---EEEEEECCCcEEEEecC
Q 001279 36 ATASILAFDHIQR---LLAIATLDGRIKVIGGD 65 (1108)
Q Consensus 36 ~~is~la~sp~~~---~LA~Gs~dG~I~iw~~~ 65 (1108)
+.+.++.|+|... +||....-|+|.|+|..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 3578999998555 99999999999999986
No 447
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.94 E-value=2.3e+02 Score=35.99 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=47.7
Q ss_pred CCEEEEEECCCcEEEEecCCcceEEeCCCCCC---------EEEEEEe----------------eCCCEEEEEeCCCcEE
Q 001279 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLP---------YKNLEFL----------------QNQGFLISITNDNEIQ 101 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~---------V~~l~fs----------------~d~~~L~S~s~d~~I~ 101 (1108)
+..|.+++.++.|.-.|..+.+.+-....+.+ .+.+.+. .++.+++..+.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56777888888888888766555533222221 1223332 1345888899999999
Q ss_pred EEEcCCCeeeeeecCCC
Q 001279 102 VWSLESRSLACCLKWES 118 (1108)
Q Consensus 102 vWd~~s~~~~~~~~~~~ 118 (1108)
-.|.++++.+..+...+
T Consensus 274 ALDA~TGk~~W~fg~~G 290 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG 290 (764)
T ss_pred EEECCCCCEEEEecCCC
Confidence 99999999987765443
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=75.58 E-value=57 Score=39.09 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=35.1
Q ss_pred CCCCcEEEEEecCC--cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCc---eEEEEEec
Q 001279 492 HSVDRVYLAGYHDG--SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG---LVYIYNLN 566 (1108)
Q Consensus 492 s~~~~llatgs~DG--tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG---~V~lw~l~ 566 (1108)
.-++.+++.|+.++ ++..||........+..+ ....... ....-+|+..++|+.++ .+..|+..
T Consensus 316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l---------~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL---------LKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred EECCEEEEECCcCCCCceEEEECCCCeEEECCCC---------CCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCC
Confidence 34677899998654 577888665543321111 1111111 12233688888888654 35566654
Q ss_pred C
Q 001279 567 G 567 (1108)
Q Consensus 567 ~ 567 (1108)
.
T Consensus 385 ~ 385 (480)
T PHA02790 385 H 385 (480)
T ss_pred C
Confidence 4
No 449
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=74.61 E-value=1.6e+02 Score=33.64 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=97.4
Q ss_pred CCCccccccceeeeeeCCCCCceEEE--Ec--CCCCE--EEEEECC----CcEEEEecCC--cceEEeCC--C-----CC
Q 001279 17 GSLTAADLNLRIAVHYGIPATASILA--FD--HIQRL--LAIATLD----GRIKVIGGDG--IEGLLISP--S-----QL 77 (1108)
Q Consensus 17 ~~l~~~~~~~~~~~~~G~~~~is~la--~s--p~~~~--LA~Gs~d----G~I~iw~~~~--~~~~~~~~--h-----~~ 77 (1108)
++|...+++-+....+. .+.+..+. +. -.++. ||+++.. ..|++|-++. ..+..... + -.
T Consensus 78 ~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~ 156 (381)
T PF02333_consen 78 GGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLS 156 (381)
T ss_dssp TEEEEEETTS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSS
T ss_pred CCEEEEcCCCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccc
Confidence 56777777777666652 12333322 21 13332 5566542 4699998753 22222221 1 12
Q ss_pred CEEEEEEee---CC-CEEEEEeCCCcEEEEEcC---CC----eeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEE
Q 001279 78 PYKNLEFLQ---NQ-GFLISITNDNEIQVWSLE---SR----SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1108)
Q Consensus 78 ~V~~l~fs~---d~-~~L~S~s~d~~I~vWd~~---s~----~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~ 146 (1108)
.+..+|+-. ++ -+++....+|.+..|-+. .+ +++..+...+.+..+.++....+|++|-++.- ||.|
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G--IW~y 234 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVG--IWRY 234 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTE--EEEE
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccE--EEEE
Confidence 366788743 23 366667788988888764 23 35677777789999999999999999999974 5877
Q ss_pred ecCC--CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE--CCCeEEEEEccCC
Q 001279 147 DADE--GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY--ENALVILWDVSEA 210 (1108)
Q Consensus 147 d~~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~--~dg~V~lWdl~~~ 210 (1108)
+.+. +.-.+.-..+.+..+ ..-|.+|+.-...+++-.++++ .+++..|||....
T Consensus 235 ~Aep~~~~~~~~v~~~~g~~l----------~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 235 DAEPEGGNDRTLVASADGDGL----------VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ESSCCC-S--EEEEEBSSSSB-----------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ecCCCCCCcceeeeccccccc----------ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 6542 111111011222111 1446677664333444333333 4668999998763
No 450
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=74.46 E-value=1.8e+02 Score=33.97 Aligned_cols=154 Identities=8% Similarity=0.040 Sum_probs=87.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCe-----eeeeecCCCCeeEEEEec-----CCCEEEEEeCCCcEEEEEEecCCCe-----
Q 001279 88 QGFLISITNDNEIQVWSLESRS-----LACCLKWESNITAFSVIS-----GSHFMYIGDENGLMSVIKYDADEGK----- 152 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~-----~~~~~~~~~~Itsl~~~~-----~~~~l~vg~~dg~V~vw~~d~~~~~----- 152 (1108)
...++.+|..|.++|++...+. ++-..+...+|..+..-. ....||+ -.-..+.|+.+....+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 4689999999999999986654 333346667887776642 2234444 55566667776433322
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCC
Q 001279 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1108)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1108)
..++. .+-.|.+++.. -..+.-.|--.....++.+-+.||.+.+|+-+.--....... . +.
T Consensus 116 ~~~L~-~~yeh~l~~~a-------~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~---~----ll---- 176 (418)
T PF14727_consen 116 QYQLE-LIYEHSLQRTA-------YNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD---F----LL---- 176 (418)
T ss_pred EEEEE-EEEEEecccce-------eEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC---C----CC----
Confidence 11100 01112121110 113333332121245688899999999998776543332211 0 00
Q ss_pred CCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
++ .++|. +.-+.+++++.+..|..|+...
T Consensus 177 ----------------Pg---Pl~Y~-~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 177 ----------------PG---PLCYC-PRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred ----------------Cc---CeEEe-ecCCEEEEecCceeEEEecHHH
Confidence 11 25543 7778899999999999998753
No 451
>PHA03098 kelch-like protein; Provisional
Probab=74.40 E-value=48 Score=40.41 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=17.5
Q ss_pred CCCcEEEEEecCC-----cEEEEeCCCCcee
Q 001279 493 SVDRVYLAGYHDG-----SVRIWDATYPVFK 518 (1108)
Q Consensus 493 ~~~~llatgs~DG-----tVriWd~~~~~l~ 518 (1108)
-++.+++.|+.++ ++..||..+....
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 3567888887663 3677887766544
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.72 E-value=48 Score=38.56 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCeEEEEEEeCCCeEEEEecCceEEEEE---ecCCCC-CccccccccCccceeecccCCcceEEEE------E-eecCcC
Q 001279 537 APVSTLSFCFINSSLAVGNEFGLVYIYN---LNGSLD-AKNFLFVLETKSEVHALPEGKISLCRAV------F-SLVNSP 605 (1108)
Q Consensus 537 ~~Vt~lafs~d~~~Lasg~~dG~V~lw~---l~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~-~~h~~~ 605 (1108)
..|..+..++.|..++-.+.+|.+.++- |..... +.... ...|..+ | ....-.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~----------------~v~CRt~~i~~~~ftss~~lt 167 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKS----------------TVNCRTTPVAERFFTSSTSLT 167 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCc----------------eEEEEeecccceeeccCCcee
Confidence 3578888999999999999999998887 333221 10000 0112211 1 112334
Q ss_pred EEEEEEcCCC---CEEEEEeCCCeEEEEEccCceEEEEeec
Q 001279 606 VRALQFTSSG---AKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1108)
Q Consensus 606 Vtslafspdg---~~LavGs~dG~V~vwd~~~~~~~~~~~~ 643 (1108)
+..++|+|++ ..|.+=+.|..|+|||+...+-+|...-
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 6778999976 6788888899999999988877765433
No 453
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=72.62 E-value=1.3e+02 Score=36.11 Aligned_cols=163 Identities=11% Similarity=0.128 Sum_probs=77.1
Q ss_pred EEEEE---ECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCe----e
Q 001279 49 LLAIA---TLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNI----T 121 (1108)
Q Consensus 49 ~LA~G---s~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~I----t 121 (1108)
+++.+ ...+.+.++|.++.-+-...........+.+.+||.+|+... +.+...|+.. +.+.....+..- .
T Consensus 117 ~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~~HH 193 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYDFHH 193 (477)
T ss_dssp EEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S
T ss_pred EEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCccccccc
Confidence 44444 345666777766654332221111111166778877666554 8899999864 454445444322 4
Q ss_pred EEEEecCCCEEEEEeC-------CC----cEEEEEEecCCCeeeeeceeecccc-cccc-------cCC---CCCCC--C
Q 001279 122 AFSVISGSHFMYIGDE-------NG----LMSVIKYDADEGKLFQLPYNISADA-LSEK-------AGF---PLLSH--Q 177 (1108)
Q Consensus 122 sl~~~~~~~~l~vg~~-------dg----~V~vw~~d~~~~~l~~~~~~i~~~~-~~~~-------~~~---~~~~~--~ 177 (1108)
.+...|+|++|+.+.. .+ .=.|..++ .+|+++.. +.+..|- .... ... ..... -
T Consensus 194 D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~-wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 194 DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWE-WDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp -EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEE-EEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEE-EehHHhCCcccccccccccccccccCCCCCCcc
Confidence 5667788888887772 10 00134444 44555542 3333321 0000 000 00111 2
Q ss_pred CeEEEecccCCCCCEEEEEECCC-eEEEEEccCCeEEEEeCC
Q 001279 178 PVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGG 218 (1108)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg-~V~lWdl~~~~~~~~~~~ 218 (1108)
.+.++.+.|. ++. |++.++.- .|...|.+++++.+..+.
T Consensus 272 H~Nsi~yd~~-dd~-iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 272 HINSIDYDPS-DDS-IIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp -EEEEEEETT-TTE-EEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred ccCccEEeCC-CCe-EEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 4889999875 344 66666655 888999999999998875
No 454
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=72.23 E-value=24 Score=37.73 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=49.5
Q ss_pred cCcCEEEEEEcC----C--C-CEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCC
Q 001279 602 VNSPVRALQFTS----S--G-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1108)
Q Consensus 602 h~~~Vtslafsp----d--g-~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~ 674 (1108)
....||||+--. + + ..|++|+++|.|.|+|.+.-.++.+... .+-||.=......
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~l---psvPv~i~~~G~~--------------- 236 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQL---PSVPVFISVSGQY--------------- 236 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEec---CCCceEEEEEeee---------------
Confidence 456678876532 1 1 5799999999999999999998877655 2233311111111
Q ss_pred CCCCCCCccEEEEEcCCccEEEE
Q 001279 675 EVPVNPAEEVIIVLFKDAKISIV 697 (1108)
Q Consensus 675 ~~~~~p~~~~L~s~s~Dg~v~v~ 697 (1108)
+..+..+++++.||.|+++
T Consensus 237 ----devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 237 ----DEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ----eccceEEEEEeCCCEEEEE
Confidence 0025569999999999876
No 455
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=71.53 E-value=2.9e+02 Score=35.19 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=61.4
Q ss_pred CCeEEEEEEe----CC---CeEEEEec----CceEEEEEecCCCCCccccccccCccceeecccCCcceEEEE-EeecCc
Q 001279 537 APVSTLSFCF----IN---SSLAVGNE----FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAV-FSLVNS 604 (1108)
Q Consensus 537 ~~Vt~lafs~----d~---~~Lasg~~----dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~h~~ 604 (1108)
..++.|.|-+ .+ ..|++.+. ...|.-|.+..........|..-+.+..........+.+... -.....
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~ 260 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK 260 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence 4678888875 11 24444433 347899998877544333333322111111111111111111 112467
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE
Q 001279 605 PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLF 639 (1108)
Q Consensus 605 ~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~ 639 (1108)
.|.+++....+.+++....||+|.++|..+-+.+.
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~ 295 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELN 295 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhc
Confidence 89999999989999999999999999998876663
No 456
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.31 E-value=5.9 Score=28.57 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=20.5
Q ss_pred EEEEEcCCccEEEEeCCCcceec
Q 001279 684 VIIVLFKDAKISIVGGSSENMIS 706 (1108)
Q Consensus 684 ~L~s~s~Dg~v~v~d~~~g~~l~ 706 (1108)
.+++++.||.|+.+|..||+++=
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEE
Confidence 47888999999999999999873
No 457
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=71.03 E-value=1.3e+02 Score=33.57 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=43.0
Q ss_pred CCCEEEEEECCCcEEEEecCCc-ceEEeCCCCCCEEEEEEeeCCCEEEEEeCC-CcEEEEEcC
Q 001279 46 IQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITND-NEIQVWSLE 106 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-~~I~vWd~~ 106 (1108)
++++|+.|+++|. .+.+.+.. .......+..+|+++...+.-+.|++.+.. ..++++|+.
T Consensus 12 ~~~~lL~GTe~Gl-y~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEGL-YVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCce-EEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 4479999999994 44446543 233344456689999999988888888743 349999983
No 458
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=70.83 E-value=2.1e+02 Score=33.32 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=66.4
Q ss_pred cccCCCCcEEEEE-ecCCc----EEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCc-----
Q 001279 489 TKCHSVDRVYLAG-YHDGS----VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG----- 558 (1108)
Q Consensus 489 ~~~s~~~~llatg-s~DGt----VriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG----- 558 (1108)
..++|+++++|-+ +..|. |++.|+.++....- . +.. ..-..+.|.+|++.|+....+.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~---------i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G---------IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E---------EEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c---------ccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 3689999988866 44454 99999998864310 0 010 0123399999988776655432
Q ss_pred ------eEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcC--EEEEEEcCCCCEEEEEeCC----Ce
Q 001279 559 ------LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP--VRALQFTSSGAKLAVGFEC----GR 626 (1108)
Q Consensus 559 ------~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~--Vtslafspdg~~LavGs~d----G~ 626 (1108)
.|..|++.+...+ -...+...... ...+..++|+++|++.... ..
T Consensus 197 ~~~~~~~v~~~~~gt~~~~-----------------------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSE-----------------------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG------------------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred cCCCCcEEEEEECCCChHh-----------------------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 2555555543221 12334443333 5678899999998865433 34
Q ss_pred EEEEEccCc
Q 001279 627 VAVLDMNLL 635 (1108)
Q Consensus 627 V~vwd~~~~ 635 (1108)
|++.|+..+
T Consensus 254 v~~~d~~~~ 262 (414)
T PF02897_consen 254 VYLLDLDDG 262 (414)
T ss_dssp EEEEECCCT
T ss_pred EEEEecccc
Confidence 788888764
No 459
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=70.76 E-value=1.7e+02 Score=32.16 Aligned_cols=162 Identities=16% Similarity=0.197 Sum_probs=89.5
Q ss_pred CCceEEEEcCCCCE------------EEEEECCCcEEEEecC--Cc----ceEEe--CCCCCCEEEEEEeeC--CCEEEE
Q 001279 36 ATASILAFDHIQRL------------LAIATLDGRIKVIGGD--GI----EGLLI--SPSQLPYKNLEFLQN--QGFLIS 93 (1108)
Q Consensus 36 ~~is~la~sp~~~~------------LA~Gs~dG~I~iw~~~--~~----~~~~~--~~h~~~V~~l~fs~d--~~~L~S 93 (1108)
+.++-+.|+..+.+ ...+++||+|.-|.-. .. ..+.. .....-++.|++-.+ +.+|..
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 45667777654444 4567899999999851 11 22222 123446788888754 567777
Q ss_pred Ee-CCCcEEEEEcCCCeeeeeecCCC----------C---------eeEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001279 94 IT-NDNEIQVWSLESRSLACCLKWES----------N---------ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1108)
Q Consensus 94 ~s-~d~~I~vWd~~s~~~~~~~~~~~----------~---------Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l 153 (1108)
+. ..++|.|+|-.-..+...-.+.. . |+--.-+++...=+.|...|.|-+++.+ +.+
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~---G~l 233 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN---GQL 233 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC---CcE
Confidence 65 37889999865554321101110 1 1111112222222334445666666655 555
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEecccCC----CCCEEEEEECCCeEEEEEccCCeEE
Q 001279 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS----SGNRVLIAYENALVILWDVSEAQII 213 (1108)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~----~~~~ll~~~~dg~V~lWdl~~~~~~ 213 (1108)
.+. +... ........|+.-|.. .+.+|+--+.||+|..||..+++.+
T Consensus 234 ~~r---~as~----------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 234 LRR---VASS----------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred EEE---eccC----------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 542 3211 111445566655543 3555556678999999999887654
No 460
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.81 E-value=2.2e+02 Score=33.07 Aligned_cols=149 Identities=7% Similarity=0.002 Sum_probs=75.2
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcCCCe-eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCC-C---eeee
Q 001279 81 NLEFLQNQGFLISITNDNEIQVWSLESRS-LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE-G---KLFQ 155 (1108)
Q Consensus 81 ~l~fs~d~~~L~S~s~d~~I~vWd~~s~~-~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~-~---~l~~ 155 (1108)
.+..++|+.+++.+...+.++-||--... ..........++++.+.+++.+++++ ..|.+. +..+... . .+..
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEE 320 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceee
Confidence 34455665555544433334445432211 11223345678999999888877766 455442 3322210 0 1111
Q ss_pred eceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCC
Q 001279 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1108)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1108)
++.. .....++++.|.+ ++. +++++.+|.+.... ..++.-..... .
T Consensus 321 ----~~~~----------~~~~~l~~v~~~~--d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~---------------~- 366 (398)
T PLN00033 321 ----ADIK----------SRGFGILDVGYRS--KKE-AWAAGGSGILLRST-DGGKSWKRDKG---------------A- 366 (398)
T ss_pred ----cccC----------CCCcceEEEEEcC--CCc-EEEEECCCcEEEeC-CCCcceeEccc---------------c-
Confidence 1100 0113488899954 566 78888888765543 33332111100 0
Q ss_pred CCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEE
Q 001279 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1108)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lW 277 (1108)
..-...+..+.|. ++ ...+..+.+|.|.-|
T Consensus 367 ----------~~~~~~ly~v~f~-~~-~~g~~~G~~G~il~~ 396 (398)
T PLN00033 367 ----------DNIAANLYSVKFF-DD-KKGFVLGNDGVLLRY 396 (398)
T ss_pred ----------CCCCcceeEEEEc-CC-CceEEEeCCcEEEEe
Confidence 0003456778865 44 445666778888766
No 461
>PHA03098 kelch-like protein; Provisional
Probab=69.78 E-value=1.3e+02 Score=36.54 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=13.9
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCe
Q 001279 87 NQGFLISITND-----NEIQVWSLESRS 109 (1108)
Q Consensus 87 d~~~L~S~s~d-----~~I~vWd~~s~~ 109 (1108)
++...+.|+.+ +.+.+||..+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 44445555543 357888887764
No 462
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=68.27 E-value=1.8e+02 Score=35.72 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=30.3
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeeeeeecCCCCeeEEEEec-CCCEEEEEeCCCcE
Q 001279 87 NQGFLISITNDN-----EIQVWSLESRSLACCLKWESNITAFSVIS-GSHFMYIGDENGLM 141 (1108)
Q Consensus 87 d~~~L~S~s~d~-----~I~vWd~~s~~~~~~~~~~~~Itsl~~~~-~~~~l~vg~~dg~V 141 (1108)
+|..-+.++.|+ +|..||..+.+-............+++.. ++...++|+.++.-
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 444556666664 48899988775433333332334443333 55566677766543
No 463
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=67.88 E-value=3.3 Score=50.50 Aligned_cols=63 Identities=6% Similarity=0.121 Sum_probs=48.5
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEE-----------EeeCCCEEEEEeCCCcEEEEEc
Q 001279 43 FDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLE-----------FLQNQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 43 ~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~-----------fs~d~~~L~S~s~d~~I~vWd~ 105 (1108)
|-++..++..|..+|.|++.+.+..+..++..|..+++.++ .||||..++..+.||.+++|-+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 44566788899999999998887766655555877766655 4688888888888888888875
No 464
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=66.76 E-value=2.3e+02 Score=32.01 Aligned_cols=119 Identities=15% Similarity=0.312 Sum_probs=65.8
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCc------EEEEEcCCC-----e--eeee--e-cCCC--------CeeEEEEecCCCE
Q 001279 76 QLPYKNLEFLQNQGFLISITNDNE------IQVWSLESR-----S--LACC--L-KWES--------NITAFSVISGSHF 131 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~------I~vWd~~s~-----~--~~~~--~-~~~~--------~Itsl~~~~~~~~ 131 (1108)
-+.++.|.+.++++.++++|+++. +...++... . .... + ...+ ..-++++.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~- 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS- 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence 357899999987788999998888 666665441 1 1111 1 1111 344788855554
Q ss_pred EEEEeCCC-----cEEEEEEecCCCeeeeeceeecccccccccC-CCCCCCCCeEEEecccCCCCCEEEEEECC
Q 001279 132 MYIGDENG-----LMSVIKYDADEGKLFQLPYNISADALSEKAG-FPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1108)
Q Consensus 132 l~vg~~dg-----~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~V~~v~f~P~~~~~~ll~~~~d 199 (1108)
++++++.+ .=+|+.++.. |++... +.+|........+ ..........+|+.+| +|..|+++...
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~-~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~~~~E~ 167 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRR-FPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLFAAMES 167 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-Ccccce-EccccccccccCccccccCCCCeEEEEECC--CCCEEEEEECc
Confidence 45555544 1267888765 555332 3334321100000 1122346789999988 67766666543
No 465
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.74 E-value=7.7 Score=26.64 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=21.2
Q ss_pred ccEEEEEcCCccEEEEeCCCccee
Q 001279 682 EEVIIVLFKDAKISIVGGSSENMI 705 (1108)
Q Consensus 682 ~~~L~s~s~Dg~v~v~d~~~g~~l 705 (1108)
+..+++++.+|.+..+|.++|+++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEE
Confidence 347999999999999999999876
No 466
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=66.25 E-value=1.5e+02 Score=34.01 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=33.9
Q ss_pred CEEEEEEeeCCCEEEEEe-----------CCC-cEEEEEcCCC--ee--eeee-cCCCCeeEEEEecCCCEEEEEeCCC
Q 001279 78 PYKNLEFLQNQGFLISIT-----------NDN-EIQVWSLESR--SL--ACCL-KWESNITAFSVISGSHFMYIGDENG 139 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s-----------~d~-~I~vWd~~s~--~~--~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg 139 (1108)
....|+|.++|..+++-. ..+ .|.+++-..+ +. ...+ ..-...+.+++.+++ |++++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 456778888876655542 122 6777765432 22 1222 222356788888888 66665553
No 467
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=62.81 E-value=2.7e+02 Score=31.49 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=36.3
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceE
Q 001279 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLV 560 (1108)
Q Consensus 494 ~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V 560 (1108)
.+.++++....+.|...++....-. .. . +..+......+..|++.|||.++++-+.+|.|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~--~~----~-~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSV--TE----E-EEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEE--EE----E-EEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCc--cc----e-EEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 4457777776666666665433210 00 0 01134555589999999999999988888876
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.12 E-value=1.6e+02 Score=34.00 Aligned_cols=155 Identities=12% Similarity=0.089 Sum_probs=86.8
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEec----CCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee---
Q 001279 39 SILAFDHIQRLLAIATLDGRIKVIGG----DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA--- 111 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~dG~I~iw~~----~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~--- 111 (1108)
+.+-||-..+.|. +...|.+.=|-. +..-..+-....++|.++.||+|.+.|+.--.+++|.+.+....+..
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 3456665555443 333455555543 22222344456679999999999999999999999999998443222
Q ss_pred -eeec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 112 -CCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 112 -~~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
...+ ....|..+.|..... +|.-...| +-++..+.+.+.+.. +..+. -.|.-..|.| +
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pekrslRl----Vks~~------------~nvnWy~yc~--e 164 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPEKRSLRL----VKSHN------------LNVNWYMYCP--E 164 (657)
T ss_pred HHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchhhhhhhh----hhhcc------------cCccEEEEcc--c
Confidence 1112 224599999987744 44444444 455666554333321 22222 3466667755 3
Q ss_pred CCE-EEEEE-CCCeEEEEEccCCeEEE
Q 001279 190 GNR-VLIAY-ENALVILWDVSEAQIIF 214 (1108)
Q Consensus 190 ~~~-ll~~~-~dg~V~lWdl~~~~~~~ 214 (1108)
... |++.+ ...++.=+-++++.+..
T Consensus 165 t~v~LL~t~~~~n~lnpf~~~~~~v~k 191 (657)
T KOG2377|consen 165 TAVILLSTTVLENVLNPFHFRAGTMSK 191 (657)
T ss_pred cceEeeeccccccccccEEEeeceeee
Confidence 332 33333 33444445566655443
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.94 E-value=85 Score=40.94 Aligned_cols=153 Identities=13% Similarity=0.192 Sum_probs=83.9
Q ss_pred ECCCcEEEEecCC-cceEEeCCCCCCEEEEE--------EeeCCCEEEEEeCCCcEEEEEcCCCee-------eeee--c
Q 001279 54 TLDGRIKVIGGDG-IEGLLISPSQLPYKNLE--------FLQNQGFLISITNDNEIQVWSLESRSL-------ACCL--K 115 (1108)
Q Consensus 54 s~dG~I~iw~~~~-~~~~~~~~h~~~V~~l~--------fs~d~~~L~S~s~d~~I~vWd~~s~~~-------~~~~--~ 115 (1108)
+-|..+.+|+.+. .+.-...+-...|..+. |-|.=++|+..++--.|.++-+.-.+. ...+ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 4588899999965 33333333333344433 334446777777777787776543321 1111 1
Q ss_pred -CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee--ceeeccccc---ccc-cCCCCCCCCCeEEEecccCC
Q 001279 116 -WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL--PYNISADAL---SEK-AGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 116 -~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~--~~~i~~~~~---~~~-~~~~~~~~~~V~~v~f~P~~ 188 (1108)
....|+|+....+|+ ++.++.||.|+=.-|...++-..+. .+.+....+ ... ...+..+.++|..+... .
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID--~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID--N 252 (1311)
T ss_pred cCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec--c
Confidence 234688888555555 5555567766555565544322110 011111000 000 01112335688888883 3
Q ss_pred CCCEEEEEECCCeEEEEEccC
Q 001279 189 SGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
....+.+-+..|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 455688899999999999987
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.78 E-value=86 Score=40.89 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=79.3
Q ss_pred ecCCcEEEEeCCCC-ceeeEeeeccccceeeccCCCCCeEEEE--------EEeCCCeEEEEecCceEEEEEecCCCCCc
Q 001279 502 YHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLS--------FCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1108)
Q Consensus 502 s~DGtVriWd~~~~-~l~~~~~l~~~~~~~~l~~h~~~Vt~la--------fs~d~~~Lasg~~dG~V~lw~l~~~~~~~ 572 (1108)
+-|+.+.+|++..+ .+.. .++-...|..+. |-|.=++|.+-..--.|.|+-+.......
T Consensus 96 TiDn~L~lWny~~~~e~~~------------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~ 163 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAE------------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTG 163 (1311)
T ss_pred EeCCeEEEEEcCCCCcccc------------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccC
Confidence 35888999999873 3331 222233444443 34444566666666678888776542211
Q ss_pred cc-cccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEEe--------
Q 001279 573 NF-LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM--NLLSVLFFT-------- 641 (1108)
Q Consensus 573 ~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~--~~~~~~~~~-------- 641 (1108)
.. .|.. ...+......|+|+....+|+.+.+| .|| .||.+ +...--+..
T Consensus 164 ~~~~f~~-----------------~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt 223 (1311)
T KOG1900|consen 164 ELSIFNT-----------------SFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLT 223 (1311)
T ss_pred ccccccc-----------------ceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCc
Confidence 10 0000 01122335678999988888766555 555 44543 211100000
Q ss_pred -----------ecCC-CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 642 -----------DDIS-GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 642 -----------~~~~-~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
..++ ++.++|..+.. |..+++|++.++.|+|.+||...
T Consensus 224 ~s~ls~lvPs~~~~~~~~~dpI~qi~I----------------------D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 224 KSVLSSLVPSLLSVPGSSKDPIRQITI----------------------DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhHHHHhhhhhhcCCCCCCCcceeeEe----------------------ccccceeeeeccCceEEEEEccC
Confidence 0011 23334444443 45689999999999999999764
No 471
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=58.57 E-value=23 Score=40.80 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=45.9
Q ss_pred CCCEEEEEECCCcEEEEecCCcceEE-eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001279 46 IQRLLAIATLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~ 105 (1108)
...++|+|+..|.||+||.-+..... +.+-...|..+..+.+|.++++.| .+.|-+-|+
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~ 631 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDV 631 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEec
Confidence 46799999999999999986665543 444566899999999999988887 445555554
No 472
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=58.13 E-value=37 Score=24.55 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=26.6
Q ss_pred eCCCEEEEEe-CCCcEEEEEcCCCeeeeeecCCCCeeEEE
Q 001279 86 QNQGFLISIT-NDNEIQVWSLESRSLACCLKWESNITAFS 124 (1108)
Q Consensus 86 ~d~~~L~S~s-~d~~I~vWd~~s~~~~~~~~~~~~Itsl~ 124 (1108)
|++++|+.+. .++.|.++|..+++.+....-......+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 4667676655 47889999999988877765443333443
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=58.06 E-value=1.4e+02 Score=36.37 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=51.3
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~ 106 (1108)
...++++.-+|.++-++.|..||.|++|+........+.....|-..|.|...| |+++++|..+--|.-.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc
Confidence 345778888999999999999999999998433322222334455667787776 8888888888888643
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=56.02 E-value=3.7e+02 Score=34.42 Aligned_cols=135 Identities=14% Similarity=0.108 Sum_probs=76.4
Q ss_pred CCCCCEEEEEEe---e---CCCEEEEEeCCCcEEEEEcCCCe---------------eeeeecC----CCCeeEEEEecC
Q 001279 74 PSQLPYKNLEFL---Q---NQGFLISITNDNEIQVWSLESRS---------------LACCLKW----ESNITAFSVISG 128 (1108)
Q Consensus 74 ~h~~~V~~l~fs---~---d~~~L~S~s~d~~I~vWd~~s~~---------------~~~~~~~----~~~Itsl~~~~~ 128 (1108)
.-..||..|+|. . ....++.+=....+.|....-.+ ++..+.+ ..+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 566799999998 2 12246666667788888732221 1222221 236778899975
Q ss_pred C-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEc
Q 001279 129 S-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 207 (1108)
Q Consensus 129 ~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl 207 (1108)
. ..+|+.+..|...||++...... ....+.+.... ...+.........-..|.|.+ +.+.|+++.... +.++|+
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~-~~~~~~~~~~~-~gsi~~d~~e~s~w~rI~W~~--~~~~lLv~~r~~-l~~~d~ 231 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKR-KSSNLRLSRNI-SGSIIFDPEELSNWKRILWVS--DSNRLLVCNRSK-LMLIDF 231 (765)
T ss_pred ccceEEEEeccCcEEEEEecccccc-CCcceeeccCC-CccccCCCcccCcceeeEecC--CCCEEEEEcCCc-eEEEEC
Confidence 4 68999999999999999321111 00011111111 111101111224556888855 455566655555 478888
Q ss_pred cCCeEE
Q 001279 208 SEAQII 213 (1108)
Q Consensus 208 ~~~~~~ 213 (1108)
++....
T Consensus 232 ~~~~~~ 237 (765)
T PF10214_consen 232 ESNWQT 237 (765)
T ss_pred CCCCcc
Confidence 887553
No 475
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=55.07 E-value=3.2e+02 Score=29.91 Aligned_cols=167 Identities=11% Similarity=0.159 Sum_probs=87.6
Q ss_pred eeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC---cceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001279 27 RIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1108)
Q Consensus 27 ~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~---~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1108)
..+-|+| ..+++++..-+-.+++.|..=-..-+|+... ...+..-.-..-+..+.|+.+ +...+..+.-++|.
T Consensus 36 ~~vghfg--~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~--yvyvad~ssGL~Iv 111 (370)
T COG5276 36 AYVGHFG--KGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEE--YVYVADWSSGLRIV 111 (370)
T ss_pred EEeeecc--CCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEeccc--EEEEEcCCCceEEE
Confidence 3445555 6777777665444554443211222344321 111222223345667777765 56666667779999
Q ss_pred EcCCCee---eeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 104 SLESRSL---ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 104 d~~s~~~---~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
|+.+-.- +..+...+- +-.|.-.+++.++++-+.-.-+.++.....-...-.|..++- .-.
T Consensus 112 DIS~P~sP~~~~~lnt~gy--aygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~--------------d~~ 175 (370)
T COG5276 112 DISTPDSPTLIGFLNTDGY--AYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG--------------DTH 175 (370)
T ss_pred eccCCCCcceeccccCCce--EEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC--------------Cce
Confidence 9876532 333333332 334444689999998443345666654322222111323221 112
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~ 217 (1108)
.++. .|++-..++.|+-+.|-|++...--.+.+
T Consensus 176 ~v~I----SGn~AYvA~~d~GL~ivDVSnp~sPvli~ 208 (370)
T COG5276 176 DVAI----SGNYAYVAWRDGGLTIVDVSNPHSPVLIG 208 (370)
T ss_pred eEEE----ecCeEEEEEeCCCeEEEEccCCCCCeEEE
Confidence 3333 46667788888888899988764333333
No 476
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.27 E-value=1.4e+02 Score=37.99 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=48.1
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCcceE----E-------eC-CCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001279 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGL----L-------IS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 41 la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~----~-------~~-~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~ 108 (1108)
+++..-|..|.+|+.||.+++|.......- . .. -+..+|..|...+...+|++.+ |+.|.+.++...
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCcc
Confidence 444556899999999999999987433111 1 11 1346788888877666666665 888888888776
Q ss_pred eee
Q 001279 109 SLA 111 (1108)
Q Consensus 109 ~~~ 111 (1108)
+..
T Consensus 99 ~~~ 101 (877)
T KOG2063|consen 99 EPV 101 (877)
T ss_pred ccc
Confidence 553
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=53.87 E-value=3.9e+02 Score=34.19 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=52.3
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-----EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCC
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1108)
...+...|+|+|.+.+ +|++....|...|||+....- ...... .. |. +-.+.++.
T Consensus 144 gg~~~aDv~FnP~~~~-q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~------------~~------gs-i~~d~~e~ 203 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQR-QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN------------IS------GS-IIFDPEEL 203 (765)
T ss_pred CCCccceEEeccCccc-eEEEEeccCcEEEEEeccccccCCcceeeccC------------CC------cc-ccCCCccc
Confidence 3457889999998555 699999999999999922211 111111 00 10 00111223
Q ss_pred CceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 250 KEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.....++|. ++-..|+.+.. ..+.++|+.+.
T Consensus 204 s~w~rI~W~-~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 204 SNWKRILWV-SDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CcceeeEec-CCCCEEEEEcC-CceEEEECCCC
Confidence 556689997 66666665544 45788888765
No 478
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=53.45 E-value=1.2e+02 Score=34.22 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=35.0
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcc--eE-Ee----CCCCCCEEEEEEeeC
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GL-LI----SPSQLPYKNLEFLQN 87 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~--~~-~~----~~h~~~V~~l~fs~d 87 (1108)
.+..|+|.|++++++ +...|+|++++.++.. .+ .. .........++|+|+
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 467899999988865 5779999999955443 22 11 224457899999994
No 479
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=53.10 E-value=26 Score=23.23 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEe
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIG 63 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~ 63 (1108)
.|.+++.. ..++|+++..+.+|||.
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 46777776 57999999999999984
No 480
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=51.29 E-value=5e+02 Score=33.15 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 249 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 249 ~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
.+.|.+++-. .-+.+++..+.||+|.+.|..+-+
T Consensus 259 ~~~V~si~~~-~~~~~v~~~~~DGsI~~~dr~t~~ 292 (753)
T PF11635_consen 259 NKRVVSITSP-ELDIVVAFAFSDGSIEFRDRNTMK 292 (753)
T ss_pred CCeEEEEEec-ccCcEEEEEEcCCeEEEEecCcch
Confidence 6788898843 667789999999999999987653
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=50.92 E-value=29 Score=42.10 Aligned_cols=136 Identities=10% Similarity=0.036 Sum_probs=74.3
Q ss_pred ceEEEEcCCCCEEEEEECC----CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCc-----EEEEEcC--
Q 001279 38 ASILAFDHIQRLLAIATLD----GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNE-----IQVWSLE-- 106 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~d----G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~-----I~vWd~~-- 106 (1108)
-..+.|--|..+.++|... ..+|+|...+..-..--+-++-=..|.|-|.|..+++...|+. |+++.-.
T Consensus 204 k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGL 283 (1243)
T COG5290 204 KKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGL 283 (1243)
T ss_pred ceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCc
Confidence 3445666666777776544 3466666554332222233334456889999999999986543 6666532
Q ss_pred -CCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 107 -SRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 107 -s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
-|+.-........++..+|+-....++++.. ..+.+|.-..-.--+.+ ...+ ..+.-|.||
T Consensus 284 rHGef~lr~~~dEk~~~~~wn~~s~vlav~~~-n~~~lwttkNyhWYLK~-e~~i----------------p~~s~vkwh 345 (1243)
T COG5290 284 RHGEFDLRVGCDEKAFLENWNLLSTVLAVAEG-NLLKLWTTKNYHWYLKV-ERQI----------------PGISYVKWH 345 (1243)
T ss_pred ccCCccccCCchhhhhhhhhhHHHHHHHHhhc-ceEEEEEccceEEEEEE-eecC----------------CCcceeeec
Confidence 2333233344455666666655555555433 34677764321111111 0112 347788999
Q ss_pred cCCCCC
Q 001279 186 PNSSGN 191 (1108)
Q Consensus 186 P~~~~~ 191 (1108)
|....+
T Consensus 346 pe~~nT 351 (1243)
T COG5290 346 PEEKNT 351 (1243)
T ss_pred cccCcE
Confidence 976665
No 482
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=50.26 E-value=4.9e+02 Score=30.66 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=79.5
Q ss_pred eeCCCEEEE-EeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCC-------EEEEEeCCCcEEEEEEec--CCCeee
Q 001279 85 LQNQGFLIS-ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSH-------FMYIGDENGLMSVIKYDA--DEGKLF 154 (1108)
Q Consensus 85 s~d~~~L~S-~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~-------~l~vg~~dg~V~vw~~d~--~~~~l~ 154 (1108)
..+...++. +...+.+.=-|++-|+++........| -+.+.|..+ .-++|-++.+| +.+|. ...++.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~sv--FrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSV--FRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccce--EEecccccCCcee
Confidence 344444443 334566777888888888877666555 566666542 34677777755 44443 223332
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCC
Q 001279 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 234 (1108)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1108)
... ... . ... ....|..- +..| ++++|+..|-|++||--..+......
T Consensus 553 v~e--sKd-Y-~tK--------n~Fss~~t--TesG-yIa~as~kGDirLyDRig~rAKtalP----------------- 600 (776)
T COG5167 553 VVE--SKD-Y-KTK--------NKFSSGMT--TESG-YIAAASRKGDIRLYDRIGKRAKTALP----------------- 600 (776)
T ss_pred eee--ehh-c-ccc--------cccccccc--ccCc-eEEEecCCCceeeehhhcchhhhcCc-----------------
Confidence 110 000 0 000 11111111 2234 59999999999999954433221110
Q ss_pred CCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 235 ~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
+. ...|..+. .+.+|.+|++.|.. .|.+-|++
T Consensus 601 --~l----------G~aIk~id-vta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 601 --GL----------GDAIKHID-VTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred --cc----------ccceeeeE-eecCCcEEEEeecc-eEEEEecc
Confidence 00 23455555 34789988887764 67776764
No 483
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=49.86 E-value=1.1e+02 Score=37.39 Aligned_cols=98 Identities=11% Similarity=-0.086 Sum_probs=49.4
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCccc--cccccCccceeecccCCcceEEEEEeecCcCEEEEEEcC----CCCEEE
Q 001279 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNF--LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS----SGAKLA 619 (1108)
Q Consensus 546 ~d~~~Lasg~~dG~V~lw~l~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafsp----dg~~La 619 (1108)
.+...|+++..||.+.............. ............+...-+.. ...-......+.++++++ +..+|+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWS-YRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT----SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcc-cccCCCCCCccceEEEecceeCCCCEEE
Confidence 47788999999999998888763211000 00000000000000000000 000112234556666666 667999
Q ss_pred EEeCCCeEEEEEccCceEEEEeecC
Q 001279 620 VGFECGRVAVLDMNLLSVLFFTDDI 644 (1108)
Q Consensus 620 vGs~dG~V~vwd~~~~~~~~~~~~~ 644 (1108)
+-+.|+++|+||+.++.++.....+
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEeCCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999999998666553
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=48.82 E-value=77 Score=36.18 Aligned_cols=161 Identities=18% Similarity=0.163 Sum_probs=92.2
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee--c-CCC----Cee-EEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--K-WES----NIT-AFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~--~-~~~----~It-sl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
..+|..+-..|||+.|...+. +++.|+++.++.+-... . .++ .|+ ++..-..+.-+.+++.||.|.-|---
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 346788888999988877764 89999999887543221 1 111 233 23333456778999999999988643
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccc
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGV 227 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~ 227 (1108)
..++.... ..+.... -...+|..+.. ....+-+++-+.+|++.++.-...+.+.....
T Consensus 299 r~~~~p~l--~h~R~f~---------l~pa~~~~l~p--e~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--------- 356 (733)
T COG4590 299 RRDGQPHL--NHIRNFK---------LAPAEVQFLLP--ETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--------- 356 (733)
T ss_pred ecCCCCcc--eeeeccc---------cCcccceeecc--ccccceEEEEcCCCceeeeecccCcceehhhh---------
Confidence 22222110 0010000 01133444444 33445578888889888776544443322110
Q ss_pred cCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
-..+.-+. +||++.++++ ...|.|+++.+++.
T Consensus 357 ---------------------~~~~~~~~-~Sp~~~~Ll~-e~~gki~~~~l~Nr 388 (733)
T COG4590 357 ---------------------YQAPQLVA-MSPNQAYLLS-EDQGKIRLAQLENR 388 (733)
T ss_pred ---------------------hcCcceee-eCcccchhee-ecCCceEEEEecCC
Confidence 11222344 4699988775 45678999988754
No 485
>PHA02790 Kelch-like protein; Provisional
Probab=48.72 E-value=5.5e+02 Score=30.76 Aligned_cols=93 Identities=10% Similarity=0.005 Sum_probs=41.7
Q ss_pred CCCEEEEEECCC-----cEEEEecCCcceEEeCCCCCC--EEEEEEeeCCCEEEEEeCC--CcEEEEEcCCCeeeeeecC
Q 001279 46 IQRLLAIATLDG-----RIKVIGGDGIEGLLISPSQLP--YKNLEFLQNQGFLISITND--NEIQVWSLESRSLACCLKW 116 (1108)
Q Consensus 46 ~~~~LA~Gs~dG-----~I~iw~~~~~~~~~~~~h~~~--V~~l~fs~d~~~L~S~s~d--~~I~vWd~~s~~~~~~~~~ 116 (1108)
++.+.++|+.++ .+..||..........+-..+ -.+++ .-++...+.++.+ ..+..||..+.+-...-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 456667777543 355666654433322221111 11122 2344444445432 4588898766543222222
Q ss_pred CCCeeEE-EEecCCCEEEEEeCCC
Q 001279 117 ESNITAF-SVISGSHFMYIGDENG 139 (1108)
Q Consensus 117 ~~~Itsl-~~~~~~~~l~vg~~dg 139 (1108)
+.+.... ...-+++..++|+.++
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~ 373 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSE 373 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCC
Confidence 2222221 2223555556666543
No 486
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.09 E-value=92 Score=35.71 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=68.5
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEE--eCCC---CCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC--
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL--ISPS---QLPYKNLEFLQNQGFLISITNDNEIQVWSLES-- 107 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~--~~~h---~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s-- 107 (1108)
.+.|.++.||+|.+.||+--.|..|.+++..+.+... ...| +..|...+|+.+ .-++-+++. -|.++-+..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhh
Confidence 4589999999999999999999999999985444332 2222 235788888876 566666643 355555433
Q ss_pred CeeeeeecCCCCeeEEEEecCCCEEEEEeC
Q 001279 108 RSLACCLKWESNITAFSVISGSHFMYIGDE 137 (1108)
Q Consensus 108 ~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~ 137 (1108)
+.+.....+...|.-..|.++.+.++.++.
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeecc
Confidence 333333356677888888888876555443
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=47.87 E-value=74 Score=32.12 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.8
Q ss_pred cCEEEEEEcCCC------CEEEEEeCCCeEEEEEccCc
Q 001279 604 SPVRALQFTSSG------AKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 604 ~~Vtslafspdg------~~LavGs~dG~V~vwd~~~~ 635 (1108)
..|.+++|||.| -+||+-+.+|.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 489999999965 57899999999999987643
No 488
>PRK13615 lipoprotein LpqB; Provisional
Probab=45.05 E-value=6.6e+02 Score=30.65 Aligned_cols=143 Identities=11% Similarity=0.014 Sum_probs=80.3
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC-Ceeeee-ec-
Q 001279 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-RSLACC-LK- 115 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s-~~~~~~-~~- 115 (1108)
.+++.++++..+|.-..++.++++...+....... ....+.=.|.+++ .+=++-.+...++..... +..... ..
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeeccc
Confidence 67899999999998888888888876643333222 2235555666665 444444433444444322 232211 12
Q ss_pred -CCCCeeEEEEecCCCEEEEEeC---CCcEEEEEEecCCCeeeeeceee-cccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 116 -WESNITAFSVISGSHFMYIGDE---NGLMSVIKYDADEGKLFQLPYNI-SADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 116 -~~~~Itsl~~~~~~~~l~vg~~---dg~V~vw~~d~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
..+.|+.+.+++++-++++-.+ .+.|+|--+....+. |+.+ ..-. ..+ .....+.++.|.. ++
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~----P~~L~~~p~---~l~---~~l~~v~sl~W~~--~~ 481 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGV----PTSLTTTPL---ELL---ASPGTPLDATWVD--EL 481 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCc----ceEeeeccE---Ecc---cCcCcceeeEEcC--CC
Confidence 2357999999999987765433 456776555543221 2223 1100 000 0114789999955 56
Q ss_pred CEEEEE
Q 001279 191 NRVLIA 196 (1108)
Q Consensus 191 ~~ll~~ 196 (1108)
++++.+
T Consensus 482 ~laVl~ 487 (557)
T PRK13615 482 DVATLT 487 (557)
T ss_pred EEEEEe
Confidence 643443
No 489
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=44.75 E-value=5.3e+02 Score=29.49 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=42.7
Q ss_pred EEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcC--CccE
Q 001279 617 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK--DAKI 694 (1108)
Q Consensus 617 ~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~--Dg~v 694 (1108)
.+..++.+|.+.-.|..++..++......+ ..+.... .. ......++.+.. ++.+
T Consensus 155 ~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-----~~~~~~~--~~----------------~~~~~~vy~~~~~~~~~~ 211 (370)
T COG1520 155 TVYVGTDDGHLYALNADTGTLKWTYETPAP-----LSLSIYG--SP----------------AIASGTVYVGSDGYDGIL 211 (370)
T ss_pred EEEEecCCCeEEEEEccCCcEEEEEecCCc-----ccccccc--Cc----------------eeecceEEEecCCCcceE
Confidence 444555789999999998888876544111 1111000 00 011456777777 7789
Q ss_pred EEEeCCCcceecCC
Q 001279 695 SIVGGSSENMISSS 708 (1108)
Q Consensus 695 ~v~d~~~g~~l~~~ 708 (1108)
..+|.++|..+-+.
T Consensus 212 ~a~~~~~G~~~w~~ 225 (370)
T COG1520 212 YALNAEDGTLKWSQ 225 (370)
T ss_pred EEEEccCCcEeeee
Confidence 99999999987553
No 490
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=42.94 E-value=31 Score=25.04 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=16.4
Q ss_pred ccEEEEEcCCccEEEEeCCC
Q 001279 682 EEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 682 ~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
+..|++++.||+|+.+|.+|
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 67899999999999999864
No 491
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=42.51 E-value=1.4e+02 Score=32.20 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=52.9
Q ss_pred CCCCEEEEEEeeC-------CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEec----CCCEEEEEeCCCcEEE
Q 001279 75 SQLPYKNLEFLQN-------QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVIS----GSHFMYIGDENGLMSV 143 (1108)
Q Consensus 75 h~~~V~~l~fs~d-------~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~----~~~~l~vg~~dg~V~v 143 (1108)
+...|+|++-... -..|+.++.++.|.|.|-+.-.++..+..++....+.... -..++++++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 3446888887542 2579999999999999999888888887776555555553 3457899999998876
Q ss_pred E
Q 001279 144 I 144 (1108)
Q Consensus 144 w 144 (1108)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 492
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=42.47 E-value=80 Score=22.52 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=20.4
Q ss_pred eecCcCEEEEEEcCCCCEEEEEeC-C--CeEEEE
Q 001279 600 SLVNSPVRALQFTSSGAKLAVGFE-C--GRVAVL 630 (1108)
Q Consensus 600 ~~h~~~Vtslafspdg~~LavGs~-d--G~V~vw 630 (1108)
....+....-+|||||+.|+..+. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345667888999999998887654 3 555444
No 493
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=40.25 E-value=5.3e+02 Score=30.16 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=17.8
Q ss_pred CCCccEEEEEcCCccEEEEeCC
Q 001279 679 NPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 679 ~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
++..++||+.+.+|+|.+||..
T Consensus 198 d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 198 DPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp ETTTTEEEEEESSE-EEEEEE-
T ss_pred cCCcCEEEEEeCCCcEEEEEEe
Confidence 3557899999999999999986
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=40.09 E-value=1.2e+02 Score=21.67 Aligned_cols=31 Identities=26% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCCCEEEEE-eCCCeEEEEEccCceEEEEeec
Q 001279 613 SSGAKLAVG-FECGRVAVLDMNLLSVLFFTDD 643 (1108)
Q Consensus 613 pdg~~LavG-s~dG~V~vwd~~~~~~~~~~~~ 643 (1108)
|++++|.+. ..+++|.++|..++.++.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 566655554 4688999999999888765544
No 495
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=39.42 E-value=8.4e+02 Score=30.26 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=53.5
Q ss_pred ceeeeeeCCCCC--ceEEEEcCC---CCEEEEEECCCc-EEEEecCCc-----------c--eEEeCCCCCCEEEEEEee
Q 001279 26 LRIAVHYGIPAT--ASILAFDHI---QRLLAIATLDGR-IKVIGGDGI-----------E--GLLISPSQLPYKNLEFLQ 86 (1108)
Q Consensus 26 ~~~~~~~G~~~~--is~la~sp~---~~~LA~Gs~dG~-I~iw~~~~~-----------~--~~~~~~h~~~V~~l~fs~ 86 (1108)
|++.+-|.+|.+ |+|+..-.. .++.++|-.+++ -++-.+... + ......-...|..+.|..
T Consensus 60 PKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~ 139 (670)
T PF10395_consen 60 PKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSS 139 (670)
T ss_pred cceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEcccceEEEEEec
Confidence 678889998877 556555322 456777755544 343322111 1 111222356899999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 001279 87 NQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 87 d~~~L~S~s~d~~I~vWd~ 105 (1108)
++..++.+-..|.|++||.
T Consensus 140 ~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 140 DGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred CCCEEEEEEcCCcEEEEec
Confidence 9999999999999999999
No 496
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=39.21 E-value=6.7 Score=44.85 Aligned_cols=110 Identities=17% Similarity=0.114 Sum_probs=79.0
Q ss_pred CCCCceEEEEcCCCCEEEE-EECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001279 34 IPATASILAFDHIQRLLAI-ATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~-Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
-|+..-.+++|-++..+|+ +-..+.|+||++..... .+..+....-..+.|++....++.+...+.+.|++-.+.+.+
T Consensus 73 ~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~i 152 (615)
T KOG2247|consen 73 PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI 152 (615)
T ss_pred CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhh
Confidence 4556667888888776555 55669999999964322 233343444455889998889999989999999999888777
Q ss_pred eeec-CCCCeeEEEEecCCCEEEEEeCCCcEEEE
Q 001279 112 CCLK-WESNITAFSVISGSHFMYIGDENGLMSVI 144 (1108)
Q Consensus 112 ~~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw 144 (1108)
..++ |..+++++++.+.+. .+.++.+..+.+-
T Consensus 153 iv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 153 IVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVT 185 (615)
T ss_pred hhhcccccceeEEEecccce-eeecCcHHHHHHh
Confidence 7776 889999999987765 4445555544443
No 497
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=38.75 E-value=3.3e+02 Score=30.28 Aligned_cols=81 Identities=15% Similarity=0.075 Sum_probs=47.0
Q ss_pred CCCeEEEEEccCceEEEEeecCCCCCCceEEEE-eeecccCccccCCCCC---CCCCCCCCCCccEEEEEcCCccEEEEe
Q 001279 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMT-WTEFKNTHSLAKNPNH---SEREVPVNPAEEVIIVLFKDAKISIVG 698 (1108)
Q Consensus 623 ~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~-fs~~~~~~~~~~~p~~---~~~~~~~~p~~~~L~s~s~Dg~v~v~d 698 (1108)
.|+.|.-.|+.+++++++-+. ..|-....... ..+..........|.+ -..+ ....++++|++.-.-.+|.++|
T Consensus 94 ~d~~~~EiDi~TgevlfeW~a-~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV-~~~~~G~yLiS~R~~~~i~~I~ 171 (299)
T PF14269_consen 94 LDDVFQEIDIETGEVLFEWSA-SDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSV-DKDDDGDYLISSRNTSTIYKID 171 (299)
T ss_pred ecceeEEeccCCCCEEEEEEh-hheecccccccccccccCCCcCCCCCCCccEeeee-eecCCccEEEEecccCEEEEEE
Confidence 356677889999999988765 33432221110 0111100001112222 2222 2234578999999999999999
Q ss_pred CCCccee
Q 001279 699 GSSENMI 705 (1108)
Q Consensus 699 ~~~g~~l 705 (1108)
..+|+++
T Consensus 172 ~~tG~I~ 178 (299)
T PF14269_consen 172 PSTGKII 178 (299)
T ss_pred CCCCcEE
Confidence 9999987
No 498
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=38.35 E-value=40 Score=30.30 Aligned_cols=57 Identities=23% Similarity=0.291 Sum_probs=40.0
Q ss_pred hhhhhcCCCCCCCCCCCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHH
Q 001279 1023 ERERLLGVPDDAKPRLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFA 1090 (1108)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~ 1090 (1108)
+-|+||.++ ..+...-.++||.| + .+..+++|++|.+++. .+-+||.++..-+++|-
T Consensus 23 ~lEevL~ss--g~~a~~e~~~lR~r---~---~~~Lk~~r~rl~~~~d---~v~~~sk~a~~~tD~yV 79 (104)
T COG4575 23 TLEEVLKSS--GSLAGDEAEELRSK---A---ESALKEARDRLGDTGD---AVVQRSKAAADATDDYV 79 (104)
T ss_pred HHHHHHHhc--ccchhhHHHHHHHH---H---HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Confidence 345666332 23455557788877 4 6788888888888874 45589999998888873
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=38.21 E-value=2.5e+02 Score=32.90 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=24.0
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
..|..+...+. ...|++...+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~--r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPS--RRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETT--TTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCC--cCEEEEEeCCCcEEEEEEeCC
Confidence 34999999774 467999999999999999753
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=38.08 E-value=1.2e+02 Score=34.67 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=90.9
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE---EeCCCCC----CEE-EEEEeeCCCEEEEEeCCCcEEEE
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQL----PYK-NLEFLQNQGFLISITNDNEIQVW 103 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~---~~~~h~~----~V~-~l~fs~d~~~L~S~s~d~~I~vW 103 (1108)
--+++++..+-.+||+++|.+-+. ..+.++++++...- +.....+ .|+ .+.....|.-|+.++.||-|.-|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 456788999999999999988775 77889988654332 1111111 222 33334456678888899999888
Q ss_pred -EcCCC-ee----eeeecCC-CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001279 104 -SLESR-SL----ACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1108)
Q Consensus 104 -d~~s~-~~----~~~~~~~-~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1108)
|++.. .. +..+... .+|..+.-....+-++.-+.+|++.++.-..+ ..+.. ..-.
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~-~~lL~-----~~~~------------ 357 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE-KLLLF-----ERAY------------ 357 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC-cceeh-----hhhh------------
Confidence 44332 11 1111222 45555555555566777777777765543221 11110 0000
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
+.+.-+.++| .+.+ +.....|.++++.+++.
T Consensus 358 ~~~~~~~~Sp--~~~~-Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 358 QAPQLVAMSP--NQAY-LLSEDQGKIRLAQLENR 388 (733)
T ss_pred cCcceeeeCc--ccch-heeecCCceEEEEecCC
Confidence 3456677887 4553 34456677788877664
Done!