Query 001279
Match_columns 1108
No_of_seqs 496 out of 3139
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 19:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oaj_A Protein SNI1; WD40 repe 100.0 3.5E-64 1.2E-68 645.4 77.7 778 21-912 3-843 (902)
2 2ymu_A WD-40 repeat protein; u 100.0 7.6E-49 2.6E-53 482.1 65.7 562 30-891 11-575 (577)
3 2ymu_A WD-40 repeat protein; u 100.0 4.7E-45 1.6E-49 448.3 62.2 525 30-845 52-577 (577)
4 1nr0_A Actin interacting prote 100.0 4.6E-44 1.6E-48 442.4 64.2 524 31-847 55-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-43 7.8E-48 473.4 55.0 620 29-891 609-1244(1249)
6 1nr0_A Actin interacting prote 100.0 1.3E-42 4.6E-47 429.3 56.5 535 35-891 18-606 (611)
7 1pgu_A Actin interacting prote 100.0 4E-40 1.4E-44 407.2 59.9 556 33-847 16-613 (615)
8 3sfz_A APAF-1, apoptotic pepti 100.0 6.4E-41 2.2E-45 449.7 53.8 558 31-848 653-1249(1249)
9 1pgu_A Actin interacting prote 100.0 1.6E-39 5.4E-44 401.9 49.0 491 29-701 57-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 6.2E-37 2.1E-41 392.8 54.8 569 30-708 53-739 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 6.5E-35 2.2E-39 373.5 45.3 443 32-708 10-467 (814)
12 1vyh_C Platelet-activating fac 100.0 4.8E-35 1.7E-39 343.1 35.5 306 29-633 102-410 (410)
13 3ow8_A WD repeat-containing pr 100.0 1.7E-33 5.8E-38 318.3 40.8 201 30-280 27-236 (321)
14 1vyh_C Platelet-activating fac 100.0 1.3E-33 4.5E-38 330.9 39.3 170 62-281 94-265 (410)
15 1got_B GT-beta; complex (GTP-b 100.0 5.8E-33 2E-37 316.8 41.5 292 68-631 47-340 (340)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-32 5.2E-37 314.0 42.2 203 31-280 11-224 (345)
17 1r5m_A SIR4-interacting protei 100.0 3E-33 1E-37 328.0 37.1 359 28-634 38-425 (425)
18 3ow8_A WD repeat-containing pr 100.0 1.8E-32 6.2E-37 309.9 40.6 285 115-699 30-319 (321)
19 2ynn_A Coatomer subunit beta'; 100.0 1.9E-32 6.6E-37 307.2 39.3 289 71-634 8-302 (304)
20 1r5m_A SIR4-interacting protei 100.0 1.2E-32 4.1E-37 322.9 39.3 355 57-700 25-424 (425)
21 3iz6_a 40S ribosomal protein R 100.0 1.9E-33 6.6E-38 326.1 31.5 311 70-636 60-377 (380)
22 4g56_B MGC81050 protein; prote 100.0 9.6E-33 3.3E-37 317.1 36.4 319 40-635 10-344 (357)
23 1got_B GT-beta; complex (GTP-b 100.0 6.7E-32 2.3E-36 308.0 42.0 200 31-281 51-257 (340)
24 4gqb_B Methylosome protein 50; 100.0 1.6E-32 5.5E-37 313.0 36.6 301 60-637 17-334 (344)
25 1gxr_A ESG1, transducin-like e 100.0 2.1E-32 7.3E-37 310.1 36.8 320 35-633 9-336 (337)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-31 5.3E-36 305.6 42.6 313 71-705 10-339 (345)
27 2pbi_B Guanine nucleotide-bind 100.0 1.1E-31 3.7E-36 308.0 40.7 293 69-631 57-354 (354)
28 2ynn_A Coatomer subunit beta'; 100.0 1.1E-31 3.8E-36 301.0 39.7 204 32-282 10-218 (304)
29 2pm9_A Protein WEB1, protein t 100.0 1.1E-33 3.8E-38 331.5 23.8 365 36-635 13-415 (416)
30 2pbi_B Guanine nucleotide-bind 100.0 1.6E-31 5.4E-36 306.7 41.1 204 30-281 59-271 (354)
31 4gqb_B Methylosome protein 50; 100.0 1.4E-32 4.9E-37 313.5 32.0 204 32-282 27-247 (344)
32 3mkq_A Coatomer beta'-subunit; 100.0 9.8E-32 3.3E-36 344.1 42.0 436 30-697 50-501 (814)
33 3frx_A Guanine nucleotide-bind 100.0 3.9E-31 1.3E-35 298.8 42.0 201 31-280 13-226 (319)
34 4g56_B MGC81050 protein; prote 100.0 3.9E-32 1.3E-36 312.1 31.4 320 80-701 9-343 (357)
35 2pm9_A Protein WEB1, protein t 100.0 4.2E-33 1.4E-37 326.5 23.7 340 77-702 13-415 (416)
36 3vl1_A 26S proteasome regulato 100.0 7.1E-32 2.4E-36 316.8 33.4 355 36-635 57-420 (420)
37 1erj_A Transcriptional repress 100.0 3.6E-31 1.2E-35 308.4 38.9 303 73-635 61-390 (393)
38 3frx_A Guanine nucleotide-bind 100.0 1.9E-30 6.6E-35 293.1 43.6 297 115-702 15-318 (319)
39 3vl1_A 26S proteasome regulato 100.0 5.1E-31 1.7E-35 309.5 39.9 353 78-701 58-419 (420)
40 2xzm_R RACK1; ribosome, transl 100.0 1.2E-30 4.1E-35 298.0 41.5 205 30-280 16-243 (343)
41 4ery_A WD repeat-containing pr 100.0 2E-30 7E-35 291.6 42.4 204 31-282 19-224 (312)
42 1gxr_A ESG1, transducin-like e 100.0 3.5E-31 1.2E-35 300.1 34.5 324 75-699 8-335 (337)
43 3iz6_a 40S ribosomal protein R 100.0 1.6E-31 5.5E-36 309.9 31.8 209 30-282 61-281 (380)
44 1erj_A Transcriptional repress 100.0 8.3E-31 2.8E-35 305.3 37.8 213 27-282 56-288 (393)
45 2hes_X YDR267CP; beta-propelle 100.0 9.2E-30 3.2E-34 289.0 41.7 202 30-281 9-230 (330)
46 2hes_X YDR267CP; beta-propelle 100.0 8E-30 2.7E-34 289.5 41.1 310 108-701 4-328 (330)
47 2xzm_R RACK1; ribosome, transl 100.0 3.1E-30 1.1E-34 294.6 37.9 302 70-635 15-341 (343)
48 4ery_A WD repeat-containing pr 100.0 6.1E-30 2.1E-34 287.7 38.7 289 69-633 16-311 (312)
49 4aow_A Guanine nucleotide-bind 100.0 8.8E-30 3E-34 289.3 40.3 214 21-282 25-247 (340)
50 2j04_B YDR362CP, TAU91; beta p 100.0 8.9E-32 3E-36 322.8 23.0 361 28-700 126-516 (524)
51 3gre_A Serine/threonine-protei 100.0 1.6E-30 5.4E-35 307.4 31.4 201 42-282 34-246 (437)
52 4aow_A Guanine nucleotide-bind 100.0 6E-29 2E-33 282.4 42.5 312 100-703 18-339 (340)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-28 5.5E-33 291.0 45.9 316 31-634 114-442 (445)
54 3zwl_B Eukaryotic translation 100.0 2.2E-28 7.4E-33 280.7 43.6 222 24-282 21-250 (369)
55 1k8k_C P40, ARP2/3 complex 41 100.0 4.8E-29 1.6E-33 287.1 37.6 164 31-209 4-173 (372)
56 3ei3_B DNA damage-binding prot 100.0 5.2E-29 1.8E-33 288.8 37.7 202 30-282 68-283 (383)
57 3v7d_B Cell division control p 100.0 2.5E-28 8.5E-33 290.9 43.5 343 70-697 115-459 (464)
58 4a11_B DNA excision repair pro 100.0 2E-28 7E-33 285.3 40.8 219 29-282 37-277 (408)
59 3i2n_A WD repeat-containing pr 100.0 5.9E-29 2E-33 284.4 35.0 206 30-280 13-242 (357)
60 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.1E-28 2.4E-32 285.5 44.8 318 70-700 112-441 (445)
61 3k26_A Polycomb protein EED; W 100.0 2.4E-29 8.1E-34 288.5 31.0 328 71-633 13-365 (366)
62 2j04_B YDR362CP, TAU91; beta p 100.0 2.7E-30 9.2E-35 310.0 23.6 192 43-282 169-387 (524)
63 1sq9_A Antiviral protein SKI8; 100.0 2.1E-28 7.1E-33 284.8 38.6 216 29-281 10-267 (397)
64 3v7d_B Cell division control p 100.0 7.8E-28 2.7E-32 286.6 44.0 219 26-282 112-342 (464)
65 4h5i_A Guanine nucleotide-exch 100.0 6.5E-29 2.2E-33 286.1 33.4 309 32-635 11-344 (365)
66 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-28 8E-33 281.3 37.1 308 116-705 7-365 (372)
67 4e54_B DNA damage-binding prot 100.0 9.8E-30 3.3E-34 300.6 26.1 206 31-282 115-328 (435)
68 3zwl_B Eukaryotic translation 100.0 5.8E-28 2E-32 277.1 39.3 304 112-705 27-350 (369)
69 3odt_A Protein DOA1; ubiquitin 100.0 5.5E-28 1.9E-32 270.8 38.3 287 69-638 11-300 (313)
70 3dm0_A Maltose-binding peripla 100.0 2.2E-28 7.5E-33 307.0 38.2 207 31-282 378-593 (694)
71 3ei3_B DNA damage-binding prot 100.0 5.1E-28 1.8E-32 280.4 36.3 164 71-282 68-237 (383)
72 3k26_A Polycomb protein EED; W 100.0 4E-28 1.4E-32 278.3 34.8 233 29-282 12-261 (366)
73 1sq9_A Antiviral protein SKI8; 100.0 1.9E-27 6.4E-32 276.7 39.2 165 490-703 193-397 (397)
74 3i2n_A WD repeat-containing pr 100.0 8.4E-28 2.9E-32 274.8 35.0 308 115-704 16-356 (357)
75 3gre_A Serine/threonine-protei 100.0 2E-28 6.8E-33 289.3 30.5 202 32-282 60-293 (437)
76 4a11_B DNA excision repair pro 100.0 7.5E-28 2.6E-32 280.5 34.3 363 56-700 22-404 (408)
77 3dm0_A Maltose-binding peripla 100.0 2.2E-27 7.5E-32 297.9 40.8 293 115-700 380-692 (694)
78 4gga_A P55CDC, cell division c 100.0 2.4E-27 8.4E-32 278.6 37.5 151 38-210 108-262 (420)
79 4e54_B DNA damage-binding prot 100.0 2.2E-28 7.5E-33 289.0 28.5 164 71-282 114-283 (435)
80 3dwl_C Actin-related protein 2 100.0 2.2E-28 7.5E-33 282.7 27.9 162 74-282 9-178 (377)
81 3dwl_C Actin-related protein 2 100.0 6.6E-29 2.2E-33 287.1 22.3 224 30-283 6-238 (377)
82 2j04_A TAU60, YPL007P, hypothe 100.0 4.1E-29 1.4E-33 291.4 19.5 193 32-282 12-212 (588)
83 4aez_A CDC20, WD repeat-contai 100.0 4.6E-27 1.6E-31 274.5 36.7 163 32-214 88-253 (401)
84 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-26 6.6E-31 258.1 36.9 196 30-282 13-215 (313)
85 2pm7_B Protein transport prote 100.0 8.7E-27 3E-31 260.2 32.2 268 115-633 7-284 (297)
86 4ggc_A P55CDC, cell division c 100.0 3.6E-26 1.2E-30 256.7 37.3 282 79-635 28-316 (318)
87 4aez_A CDC20, WD repeat-contai 100.0 2.9E-26 1E-30 267.6 37.6 291 71-708 86-387 (401)
88 1yfq_A Cell cycle arrest prote 100.0 1.3E-26 4.5E-31 263.5 32.9 289 71-631 6-321 (342)
89 4h5i_A Guanine nucleotide-exch 100.0 7.6E-26 2.6E-30 260.4 38.3 157 490-701 183-343 (365)
90 3bg1_A Protein SEC13 homolog; 100.0 6.3E-27 2.2E-31 263.8 28.5 272 115-633 11-292 (316)
91 1p22_A F-BOX/WD-repeat protein 100.0 3.5E-26 1.2E-30 270.1 36.2 114 29-148 127-242 (435)
92 3dw8_B Serine/threonine-protei 100.0 2.4E-26 8.2E-31 271.9 34.1 211 35-281 28-315 (447)
93 2pm7_B Protein transport prote 100.0 7.7E-26 2.6E-30 252.5 35.2 207 29-281 3-238 (297)
94 4ggc_A P55CDC, cell division c 100.0 8.1E-26 2.8E-30 253.9 35.1 197 38-282 28-231 (318)
95 1yfq_A Cell cycle arrest prote 100.0 3.3E-26 1.1E-30 260.1 31.3 202 32-282 8-226 (342)
96 3f3f_A Nucleoporin SEH1; struc 99.9 7.7E-26 2.6E-30 256.5 33.9 218 30-282 6-250 (351)
97 3mmy_A MRNA export factor; mRN 99.9 4.3E-26 1.5E-30 261.3 31.4 305 67-632 30-344 (368)
98 3f3f_A Nucleoporin SEH1; struc 99.9 1.1E-25 3.8E-30 255.2 32.0 181 71-280 6-200 (351)
99 3mmy_A MRNA export factor; mRN 99.9 2.6E-25 8.8E-30 254.9 35.1 299 103-698 24-343 (368)
100 3dw8_B Serine/threonine-protei 99.9 8.5E-26 2.9E-30 267.2 30.7 182 73-282 25-259 (447)
101 1p22_A F-BOX/WD-repeat protein 99.9 3.5E-25 1.2E-29 261.5 35.8 115 72-211 129-244 (435)
102 4gga_A P55CDC, cell division c 99.9 5.9E-25 2E-29 258.3 37.1 285 119-703 107-397 (420)
103 2aq5_A Coronin-1A; WD40 repeat 99.9 7.6E-25 2.6E-29 255.7 30.0 197 35-280 34-253 (402)
104 3jrp_A Fusion protein of prote 99.9 2.4E-24 8.3E-29 248.0 33.8 121 115-281 9-134 (379)
105 1k32_A Tricorn protease; prote 99.9 1.7E-22 5.8E-27 265.0 55.5 438 34-703 13-504 (1045)
106 3jrp_A Fusion protein of prote 99.9 2.5E-24 8.4E-29 248.0 32.9 166 70-281 5-191 (379)
107 3bg1_A Protein SEC13 homolog; 99.9 8.7E-25 3E-29 246.3 24.6 251 31-352 9-292 (316)
108 3vu4_A KMHSV2; beta-propeller 99.9 6.5E-24 2.2E-28 243.3 31.7 152 32-211 16-170 (355)
109 2j04_A TAU60, YPL007P, hypothe 99.9 2.4E-25 8.3E-30 259.7 19.7 284 71-633 10-296 (588)
110 2xyi_A Probable histone-bindin 99.9 1.7E-23 5.7E-28 246.7 34.2 209 28-280 38-308 (430)
111 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.5E-23 5.2E-28 248.6 33.8 160 76-282 4-230 (450)
112 1k32_A Tricorn protease; prote 99.9 3.3E-22 1.1E-26 262.3 49.3 412 30-637 47-505 (1045)
113 3vu4_A KMHSV2; beta-propeller 99.9 1.3E-23 4.4E-28 240.8 30.4 168 501-703 155-338 (355)
114 2xyi_A Probable histone-bindin 99.9 3.3E-23 1.1E-27 244.2 32.9 151 494-702 243-411 (430)
115 4gq1_A NUP37; propeller, trans 99.9 2.4E-23 8.1E-28 242.2 29.8 226 33-282 13-287 (393)
116 3bws_A Protein LP49; two-domai 99.9 3E-22 1E-26 235.7 39.5 199 34-282 59-293 (433)
117 3jro_A Fusion protein of prote 99.9 1.3E-23 4.5E-28 265.3 28.7 207 30-282 4-239 (753)
118 1l0q_A Surface layer protein; 99.9 6.8E-22 2.3E-26 229.3 39.8 185 47-282 2-190 (391)
119 2aq5_A Coronin-1A; WD40 repeat 99.9 1.9E-23 6.4E-28 243.8 26.6 156 490-704 183-345 (402)
120 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.1E-22 3.9E-27 241.0 32.5 200 36-282 5-272 (450)
121 4gq1_A NUP37; propeller, trans 99.9 1.6E-23 5.4E-28 243.7 24.4 115 125-282 97-219 (393)
122 1l0q_A Surface layer protein; 99.9 2.1E-21 7.2E-26 225.2 39.9 329 89-704 3-345 (391)
123 3jro_A Fusion protein of prote 99.9 1.2E-22 4.1E-27 256.6 30.6 121 115-281 7-132 (753)
124 3lrv_A PRE-mRNA-splicing facto 99.9 1.3E-22 4.4E-27 231.3 26.9 158 85-282 45-202 (343)
125 3bws_A Protein LP49; two-domai 99.9 1.1E-20 3.9E-25 222.2 39.6 354 35-700 27-431 (433)
126 1nir_A Nitrite reductase; hemo 99.9 4E-21 1.4E-25 232.1 34.6 205 40-282 142-356 (543)
127 3lrv_A PRE-mRNA-splicing facto 99.9 3.8E-22 1.3E-26 227.4 21.9 186 43-282 44-245 (343)
128 2w18_A PALB2, fancn, partner a 99.9 8.8E-21 3E-25 208.3 30.5 143 494-699 192-355 (356)
129 2w18_A PALB2, fancn, partner a 99.9 1.6E-20 5.4E-25 206.3 32.1 103 497-632 252-355 (356)
130 1nir_A Nitrite reductase; hemo 99.9 1.5E-20 5.2E-25 227.0 33.9 351 84-708 145-521 (543)
131 2ecf_A Dipeptidyl peptidase IV 99.9 3.7E-19 1.3E-23 224.9 37.1 223 22-282 21-322 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 99.8 5.4E-19 1.8E-23 206.8 29.4 194 37-281 64-300 (415)
133 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.1E-18 3.9E-23 204.1 30.9 299 77-661 63-410 (415)
134 2z3z_A Dipeptidyl aminopeptida 99.8 2.1E-18 7.1E-23 216.7 34.3 205 38-282 28-294 (706)
135 2ecf_A Dipeptidyl peptidase IV 99.8 3.8E-18 1.3E-22 215.6 32.8 169 76-278 36-237 (741)
136 1ri6_A Putative isomerase YBHE 99.8 1.6E-16 5.3E-21 179.9 37.2 145 90-281 6-160 (343)
137 1xfd_A DIP, dipeptidyl aminope 99.8 8.7E-18 3E-22 211.7 27.0 215 34-282 15-290 (723)
138 1ri6_A Putative isomerase YBHE 99.8 1.7E-16 5.7E-21 179.6 33.6 188 49-280 7-208 (343)
139 2z3z_A Dipeptidyl aminopeptida 99.8 1.3E-16 4.3E-21 200.5 33.4 157 489-703 263-437 (706)
140 2ojh_A Uncharacterized protein 99.8 1.1E-16 3.7E-21 176.5 27.0 176 53-279 18-202 (297)
141 1pby_B Quinohemoprotein amine 99.8 5.6E-16 1.9E-20 174.8 32.2 147 89-282 2-164 (337)
142 3u4y_A Uncharacterized protein 99.7 1.8E-15 6.2E-20 170.6 32.6 149 82-281 3-160 (331)
143 3hfq_A Uncharacterized protein 99.7 3.2E-15 1.1E-19 170.0 34.3 164 490-705 147-323 (347)
144 1xfd_A DIP, dipeptidyl aminope 99.7 5.4E-16 1.8E-20 195.3 26.6 172 77-280 17-203 (723)
145 1z68_A Fibroblast activation p 99.7 5.8E-16 2E-20 194.8 26.8 153 39-199 19-189 (719)
146 3vgz_A Uncharacterized protein 99.7 1.1E-14 3.9E-19 165.4 34.7 167 75-282 39-216 (353)
147 3vgz_A Uncharacterized protein 99.7 6.5E-15 2.2E-19 167.4 32.2 206 32-282 37-263 (353)
148 3u4y_A Uncharacterized protein 99.7 3.5E-15 1.2E-19 168.2 28.8 194 41-282 3-208 (331)
149 3o4h_A Acylamino-acid-releasin 99.7 1E-15 3.6E-20 187.5 26.3 154 76-282 21-185 (582)
150 2ojh_A Uncharacterized protein 99.7 3.6E-15 1.2E-19 164.2 26.8 202 30-282 36-259 (297)
151 3scy_A Hypothetical bacterial 99.7 1.4E-13 4.9E-18 157.3 37.2 138 490-657 217-360 (361)
152 3hfq_A Uncharacterized protein 99.7 5.3E-14 1.8E-18 159.9 33.0 145 97-280 15-170 (347)
153 1jmx_B Amine dehydrogenase; ox 99.7 1.3E-14 4.3E-19 164.6 27.2 157 40-216 4-182 (349)
154 3o4h_A Acylamino-acid-releasin 99.7 1.2E-14 4E-19 178.1 28.8 193 35-282 21-228 (582)
155 2oit_A Nucleoporin 214KDA; NH2 99.7 1.1E-15 3.8E-20 179.3 18.4 203 36-282 37-279 (434)
156 1z68_A Fibroblast activation p 99.6 8.4E-15 2.9E-19 184.2 24.2 163 81-279 20-198 (719)
157 3scy_A Hypothetical bacterial 99.6 1E-12 3.5E-17 150.2 38.5 167 490-708 161-346 (361)
158 1jof_A Carboxy-CIS,CIS-muconat 99.6 5.7E-13 2E-17 152.7 31.6 170 490-702 151-342 (365)
159 1jof_A Carboxy-CIS,CIS-muconat 99.6 8.9E-13 3E-17 151.1 32.3 191 49-280 4-223 (365)
160 1jmx_B Amine dehydrogenase; ox 99.6 3E-13 1E-17 153.2 27.3 155 81-282 4-176 (349)
161 4a5s_A Dipeptidyl peptidase 4 99.6 1.8E-12 6E-17 163.4 35.4 163 35-206 16-199 (740)
162 1pby_B Quinohemoprotein amine 99.6 4.3E-13 1.5E-17 151.0 26.1 204 37-282 35-311 (337)
163 2oit_A Nucleoporin 214KDA; NH2 99.5 2.8E-14 9.6E-19 167.4 16.1 165 32-210 89-279 (434)
164 3pe7_A Oligogalacturonate lyas 99.5 2.5E-12 8.5E-17 148.3 27.5 157 65-271 19-209 (388)
165 3pe7_A Oligogalacturonate lyas 99.5 2.2E-12 7.6E-17 148.7 25.7 196 41-282 41-274 (388)
166 3azo_A Aminopeptidase; POP fam 99.5 6.6E-12 2.3E-16 156.1 28.2 200 32-279 20-270 (662)
167 1urq_A M-tomosyn isoform; tran 99.5 4.1E-14 1.4E-18 112.3 5.0 60 1039-1101 4-63 (63)
168 3azo_A Aminopeptidase; POP fam 99.4 8.2E-12 2.8E-16 155.2 27.8 164 72-280 19-225 (662)
169 3c5m_A Oligogalacturonate lyas 99.4 3.2E-12 1.1E-16 147.6 22.1 161 38-270 38-208 (396)
170 4a5s_A Dipeptidyl peptidase 4 99.4 4.2E-11 1.4E-15 150.8 33.2 167 77-280 17-201 (740)
171 2oiz_A Aromatic amine dehydrog 99.4 5.3E-11 1.8E-15 135.9 30.9 148 87-280 14-181 (361)
172 2oiz_A Aromatic amine dehydrog 99.4 3.9E-11 1.3E-15 137.0 27.8 146 46-213 14-187 (361)
173 1qks_A Cytochrome CD1 nitrite 99.4 2.2E-09 7.4E-14 129.2 39.5 202 42-282 162-374 (567)
174 1qks_A Cytochrome CD1 nitrite 99.3 2.5E-09 8.6E-14 128.6 38.6 113 86-216 165-282 (567)
175 2gop_A Trilobed protease; beta 99.3 3.4E-10 1.2E-14 128.1 29.3 110 78-212 16-164 (347)
176 3c5m_A Oligogalacturonate lyas 99.2 1.7E-10 5.8E-15 133.0 19.9 99 101-216 13-118 (396)
177 1q7f_A NHL, brain tumor CG1071 99.2 4.1E-09 1.4E-13 115.7 29.9 198 35-280 29-237 (286)
178 2gop_A Trilobed protease; beta 99.2 2.1E-09 7.3E-14 121.5 28.2 94 37-137 16-123 (347)
179 2dg1_A DRP35, lactonase; beta 99.2 3E-09 1E-13 119.6 24.9 193 37-280 7-212 (333)
180 3fvz_A Peptidyl-glycine alpha- 99.2 5.2E-09 1.8E-13 117.7 26.8 212 35-283 23-279 (329)
181 1q7f_A NHL, brain tumor CG1071 99.1 6.1E-09 2.1E-13 114.3 25.9 198 36-282 77-281 (286)
182 2xdw_A Prolyl endopeptidase; a 99.1 7.2E-09 2.5E-13 129.7 29.5 150 45-209 81-268 (710)
183 2bkl_A Prolyl endopeptidase; m 99.1 1.4E-09 4.8E-14 135.8 22.9 156 45-217 77-269 (695)
184 3e5z_A Putative gluconolactona 99.1 1.3E-08 4.6E-13 112.3 26.7 194 35-280 27-245 (296)
185 3fvz_A Peptidyl-glycine alpha- 99.1 8.8E-09 3E-13 115.8 25.0 202 34-281 89-322 (329)
186 1xip_A Nucleoporin NUP159; bet 99.1 2E-09 6.9E-14 122.0 19.5 178 37-267 39-230 (388)
187 2z2n_A Virginiamycin B lyase; 99.1 3E-07 1E-11 100.9 36.5 194 35-279 14-211 (299)
188 2z2n_A Virginiamycin B lyase; 99.1 3.5E-07 1.2E-11 100.3 36.2 155 75-279 13-169 (299)
189 2dg1_A DRP35, lactonase; beta 99.0 7.6E-08 2.6E-12 108.0 29.8 206 33-280 42-262 (333)
190 1yr2_A Prolyl oligopeptidase; 99.0 3.8E-08 1.3E-12 123.7 29.0 148 45-210 116-304 (741)
191 2xdw_A Prolyl endopeptidase; a 99.0 1.2E-08 4E-13 127.8 22.2 200 34-281 123-368 (710)
192 3no2_A Uncharacterized protein 99.0 1.9E-08 6.4E-13 109.9 19.9 188 46-282 4-196 (276)
193 3e5z_A Putative gluconolactona 99.0 6.6E-08 2.3E-12 106.6 24.5 198 34-282 67-287 (296)
194 3sjl_D Methylamine dehydrogena 98.9 3.8E-07 1.3E-11 102.9 29.9 154 82-281 38-208 (386)
195 2qc5_A Streptogramin B lactona 98.9 2.3E-06 8E-11 93.7 35.9 193 36-279 20-216 (300)
196 1rwi_B Serine/threonine-protei 98.9 1.2E-07 4.2E-12 102.6 24.3 196 37-282 25-223 (270)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 7.4E-07 2.5E-11 98.7 29.9 213 25-282 7-257 (314)
198 2mad_H Methylamine dehydrogena 98.9 6.2E-06 2.1E-10 94.0 37.9 118 84-215 28-162 (373)
199 2bkl_A Prolyl endopeptidase; m 98.9 2.3E-08 8E-13 124.7 19.0 197 33-280 118-348 (695)
200 2qc5_A Streptogramin B lactona 98.9 3.6E-06 1.2E-10 92.2 34.2 155 75-279 18-174 (300)
201 1yr2_A Prolyl oligopeptidase; 98.8 5.2E-07 1.8E-11 113.3 29.6 152 490-703 274-443 (741)
202 1rwi_B Serine/threonine-protei 98.8 1.1E-07 3.9E-12 102.9 20.3 197 36-282 67-265 (270)
203 3dsm_A Uncharacterized protein 98.8 1.4E-06 4.8E-11 97.6 27.7 193 36-283 44-255 (328)
204 3sjl_D Methylamine dehydrogena 98.8 1.3E-06 4.4E-11 98.6 26.9 148 41-212 38-212 (386)
205 3hrp_A Uncharacterized protein 98.8 6.9E-07 2.4E-11 103.4 25.1 216 37-282 132-355 (409)
206 1xip_A Nucleoporin NUP159; bet 98.8 5.8E-08 2E-12 110.0 15.5 143 78-282 39-192 (388)
207 3g4e_A Regucalcin; six bladed 98.8 9.8E-07 3.3E-11 97.3 24.5 196 31-271 49-262 (297)
208 3q7m_A Lipoprotein YFGL, BAMB; 98.7 1.8E-05 6.3E-10 90.2 34.9 146 88-282 53-208 (376)
209 3dsm_A Uncharacterized protein 98.7 4.3E-07 1.5E-11 101.9 19.9 198 33-280 81-301 (328)
210 2mad_H Methylamine dehydrogena 98.7 3.3E-06 1.1E-10 96.2 27.3 204 40-283 70-352 (373)
211 3no2_A Uncharacterized protein 98.7 1.9E-06 6.4E-11 93.9 23.4 194 28-269 27-231 (276)
212 4a2l_A BT_4663, two-component 98.7 0.0038 1.3E-07 78.7 63.9 198 36-282 88-292 (795)
213 3hrp_A Uncharacterized protein 98.7 4.6E-06 1.6E-10 96.4 27.1 165 78-280 132-297 (409)
214 3c75_H MADH, methylamine dehyd 98.6 5.4E-06 1.8E-10 95.2 26.9 118 86-216 82-216 (426)
215 4a2l_A BT_4663, two-component 98.6 0.0034 1.2E-07 79.1 54.6 203 38-282 175-387 (795)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 4.3E-06 1.5E-10 92.5 24.4 202 34-282 69-300 (314)
217 3g4e_A Regucalcin; six bladed 98.6 6.3E-06 2.2E-10 90.8 25.1 198 38-282 15-230 (297)
218 2ghs_A AGR_C_1268P; regucalcin 98.5 1.2E-05 4.1E-10 89.8 25.5 193 32-272 86-293 (326)
219 1kb0_A Quinohemoprotein alcoho 98.5 4.1E-05 1.4E-09 94.4 31.9 111 88-216 77-206 (677)
220 2ghs_A AGR_C_1268P; regucalcin 98.5 2.5E-05 8.5E-10 87.3 27.4 192 38-280 51-259 (326)
221 3q7m_A Lipoprotein YFGL, BAMB; 98.5 7.9E-05 2.7E-09 84.8 32.0 171 24-216 26-214 (376)
222 3dr2_A Exported gluconolactona 98.5 5.5E-06 1.9E-10 91.6 20.0 191 34-275 84-301 (305)
223 3iuj_A Prolyl endopeptidase; h 98.4 2.7E-06 9.2E-11 105.8 18.5 195 34-281 127-359 (693)
224 2qe8_A Uncharacterized protein 98.4 2.5E-05 8.6E-10 87.9 24.2 227 26-281 9-278 (343)
225 3iuj_A Prolyl endopeptidase; h 98.4 5.9E-06 2E-10 102.7 20.7 120 75-210 127-269 (693)
226 1yiq_A Quinohemoprotein alcoho 98.4 0.00014 4.9E-09 89.8 31.4 112 88-216 70-199 (689)
227 3v9f_A Two-component system se 98.3 0.019 6.6E-07 72.0 57.8 206 37-282 67-288 (781)
228 3c75_H MADH, methylamine dehyd 98.3 1.1E-05 3.7E-10 92.6 19.0 206 40-283 122-404 (426)
229 1l4a_A Synaptobrevin; snare, s 98.3 2.6E-07 8.9E-12 78.2 3.7 64 1037-1107 13-76 (80)
230 3dr2_A Exported gluconolactona 98.3 3.6E-05 1.2E-09 85.0 22.4 156 35-211 44-226 (305)
231 1kb0_A Quinohemoprotein alcoho 98.3 7.3E-05 2.5E-09 92.2 26.1 188 490-708 249-514 (677)
232 1yiq_A Quinohemoprotein alcoho 98.2 0.00032 1.1E-08 86.6 30.1 209 47-283 70-340 (689)
233 1n7s_A Vesicle-associated memb 98.2 1.2E-06 4.1E-11 70.6 4.5 48 1053-1100 15-62 (63)
234 3v9f_A Two-component system se 98.2 0.041 1.4E-06 69.0 54.9 212 37-282 116-343 (781)
235 1sfc_A VAMP 2, protein (synapt 98.2 1.6E-06 5.5E-11 75.8 5.2 60 1038-1100 29-88 (96)
236 2hz6_A Endoplasmic reticulum t 98.1 3.3E-07 1.1E-11 104.6 0.0 180 46-282 8-193 (369)
237 2qe8_A Uncharacterized protein 98.1 6.6E-05 2.3E-09 84.4 19.1 199 35-277 66-317 (343)
238 2iwa_A Glutamine cyclotransfer 98.1 0.0006 2E-08 72.7 25.1 224 22-282 5-238 (266)
239 1mda_H Methylamine dehydrogena 98.1 1.7E-05 5.8E-10 89.5 12.5 68 40-107 69-158 (368)
240 3ei3_A DNA damage-binding prot 98.1 0.091 3.1E-06 68.1 65.6 125 26-150 67-217 (1158)
241 3hd7_A Vesicle-associated memb 98.0 4.5E-06 1.5E-10 72.5 5.0 48 1053-1100 16-63 (91)
242 3nol_A Glutamine cyclotransfer 98.0 0.0008 2.7E-08 70.8 23.1 214 21-270 26-244 (262)
243 2ece_A 462AA long hypothetical 98.0 0.00067 2.3E-08 77.0 23.5 164 38-208 140-351 (462)
244 3s94_A LRP-6, low-density lipo 98.0 0.077 2.6E-06 64.1 50.0 159 36-211 40-204 (619)
245 1npe_A Nidogen, entactin; glyc 97.9 0.0016 5.5E-08 69.9 25.2 157 37-212 37-201 (267)
246 2nps_A VAMP-4, vesicle-associa 97.9 1E-05 3.5E-10 67.4 5.2 63 1038-1107 7-69 (74)
247 3mbr_X Glutamine cyclotransfer 97.9 0.0031 1E-07 65.8 25.1 214 22-270 5-223 (243)
248 1mda_H Methylamine dehydrogena 97.9 0.0012 4.1E-08 74.4 23.5 75 542-642 269-354 (368)
249 3ei3_A DNA damage-binding prot 97.8 0.21 7.3E-06 64.6 47.4 116 37-155 515-643 (1158)
250 2hz6_A Endoplasmic reticulum t 97.8 2.7E-06 9.3E-11 96.9 -0.1 145 494-706 8-154 (369)
251 3hxj_A Pyrrolo-quinoline quino 97.8 0.00083 2.8E-08 74.4 20.4 100 89-215 31-131 (330)
252 2ece_A 462AA long hypothetical 97.8 0.0046 1.6E-07 70.2 25.9 208 45-282 93-353 (462)
253 2kog_A Vesicle-associated memb 97.8 1.4E-06 4.7E-11 79.5 -2.4 48 1053-1100 44-91 (119)
254 2fp8_A Strictosidine synthase; 97.7 0.013 4.4E-07 64.7 28.9 154 37-209 20-216 (322)
255 1kv9_A Type II quinohemoprotei 97.7 0.0063 2.2E-07 74.7 28.3 112 88-217 66-195 (668)
256 3b5n_A Synaptobrevin homolog 1 97.7 3.9E-05 1.3E-09 61.1 5.4 47 1054-1100 14-60 (61)
257 1kv9_A Type II quinohemoprotei 97.7 0.0045 1.5E-07 76.1 26.7 188 490-708 236-495 (668)
258 1w6s_A Methanol dehydrogenase 97.7 0.014 4.9E-07 70.1 30.3 113 88-217 62-199 (599)
259 3nok_A Glutaminyl cyclase; bet 97.7 0.0025 8.7E-08 67.0 19.6 172 26-218 43-219 (268)
260 1fwx_A Nitrous oxide reductase 97.6 0.00089 3.1E-08 78.7 17.9 214 45-281 99-361 (595)
261 4a0p_A LRP6, LRP-6, low-densit 97.6 0.23 8E-06 60.0 55.2 198 36-283 37-239 (628)
262 2ad6_A Methanol dehydrogenase 97.6 0.031 1.1E-06 67.0 31.6 112 88-217 62-193 (571)
263 3qqz_A Putative uncharacterize 97.6 0.015 5E-07 61.5 25.2 215 32-278 23-250 (255)
264 1flg_A Protein (quinoprotein e 97.6 0.094 3.2E-06 62.9 35.1 59 624-708 465-523 (582)
265 1fwx_A Nitrous oxide reductase 97.5 0.0026 8.8E-08 74.8 19.6 162 36-209 134-361 (595)
266 2ad6_A Methanol dehydrogenase 97.4 0.05 1.7E-06 65.2 29.8 60 623-708 442-501 (571)
267 1gl2_A Endobrevin; membrane pr 97.4 0.00015 5.2E-09 58.5 4.3 57 1038-1097 8-64 (65)
268 1npe_A Nidogen, entactin; glyc 97.3 0.038 1.3E-06 59.0 24.6 183 48-280 2-197 (267)
269 2xe4_A Oligopeptidase B; hydro 97.3 0.0064 2.2E-07 75.9 20.9 111 37-148 175-302 (751)
270 2fp8_A Strictosidine synthase; 97.3 0.017 5.9E-07 63.7 22.1 198 37-281 81-313 (322)
271 2p4o_A Hypothetical protein; p 97.2 0.028 9.5E-07 61.5 22.7 211 26-280 22-241 (306)
272 3nol_A Glutamine cyclotransfer 97.2 0.014 4.8E-07 61.4 18.5 166 69-283 33-203 (262)
273 3nok_A Glutaminyl cyclase; bet 97.2 0.012 4.2E-07 61.8 17.6 166 68-283 44-212 (268)
274 2iwa_A Glutamine cyclotransfer 97.1 0.026 8.9E-07 60.0 20.3 166 70-283 12-183 (266)
275 3mbr_X Glutamine cyclotransfer 97.1 0.039 1.3E-06 57.5 20.4 167 68-283 10-181 (243)
276 1ijq_A LDL receptor, low-densi 97.0 0.21 7.1E-06 54.8 27.2 200 35-282 29-239 (316)
277 1k3i_A Galactose oxidase precu 97.0 0.12 4.1E-06 63.2 27.8 32 607-638 459-501 (656)
278 3hxj_A Pyrrolo-quinoline quino 96.9 0.016 5.5E-07 63.8 16.6 175 47-279 107-282 (330)
279 3amr_A 3-phytase; beta-propell 96.9 0.23 7.8E-06 54.5 24.9 189 44-280 37-262 (355)
280 3v64_C Agrin; beta propeller, 96.9 0.29 9.9E-06 54.5 26.9 159 36-211 73-236 (349)
281 3v65_B Low-density lipoprotein 96.9 0.18 6.1E-06 57.1 25.4 199 36-282 116-319 (386)
282 3amr_A 3-phytase; beta-propell 96.8 0.063 2.1E-06 58.9 20.0 182 17-214 50-269 (355)
283 3tc9_A Hypothetical hydrolase; 96.8 0.029 9.9E-07 64.7 18.1 155 37-209 138-301 (430)
284 1k3i_A Galactose oxidase precu 96.8 0.064 2.2E-06 65.7 22.1 119 34-154 184-327 (656)
285 3p5b_L Low density lipoprotein 96.7 0.42 1.4E-05 54.3 27.2 159 35-212 111-280 (400)
286 2p4o_A Hypothetical protein; p 96.7 0.23 7.8E-06 54.1 23.9 194 32-272 68-279 (306)
287 3sov_A LRP-6, low-density lipo 96.7 0.24 8.2E-06 54.4 23.7 196 37-282 36-239 (318)
288 4hw6_A Hypothetical protein, I 96.6 0.54 1.8E-05 54.0 26.9 228 37-280 140-432 (433)
289 3v64_C Agrin; beta propeller, 96.5 0.49 1.7E-05 52.6 25.4 197 35-281 33-234 (349)
290 3qqz_A Putative uncharacterize 96.5 0.4 1.4E-05 50.5 22.6 172 76-281 26-204 (255)
291 3m0c_C LDL receptor, low-densi 96.4 0.57 1.9E-05 58.0 26.9 161 35-212 423-592 (791)
292 3pbp_A Nucleoporin NUP82; beta 96.2 0.16 5.3E-06 56.9 18.6 162 85-278 29-209 (452)
293 3v65_B Low-density lipoprotein 96.2 0.91 3.1E-05 51.2 25.8 193 37-280 78-276 (386)
294 3tc9_A Hypothetical hydrolase; 96.1 0.14 4.8E-06 58.9 18.7 158 78-280 138-300 (430)
295 2p9w_A MAL S 1 allergenic prot 96.1 0.21 7E-06 54.3 18.4 158 38-209 15-215 (334)
296 2xbg_A YCF48-like protein; pho 96.1 0.47 1.6E-05 52.2 21.9 197 34-279 120-320 (327)
297 1flg_A Protein (quinoprotein e 96.0 0.17 5.7E-06 60.8 19.2 76 39-115 249-363 (582)
298 1w6s_A Methanol dehydrogenase 95.8 0.64 2.2E-05 55.7 22.7 72 81-154 245-346 (599)
299 2nut_C Vesicle-trafficking pro 95.8 0.0016 5.5E-08 66.1 -0.1 49 1055-1107 147-195 (196)
300 3kya_A Putative phosphatase; s 95.6 1.1 3.9E-05 51.7 23.0 157 37-209 140-341 (496)
301 1ijq_A LDL receptor, low-densi 95.6 1.4 4.9E-05 48.0 23.2 183 49-281 3-195 (316)
302 2xe4_A Oligopeptidase B; hydro 95.5 0.69 2.4E-05 57.4 22.3 111 39-149 224-353 (751)
303 4b93_A Vesicle-associated memb 95.4 0.00036 1.2E-08 70.2 -6.2 48 1056-1107 139-186 (189)
304 1n7d_A LDL receptor, low-densi 94.9 0.063 2.1E-06 66.0 10.3 158 36-211 406-573 (699)
305 3kya_A Putative phosphatase; s 94.8 0.53 1.8E-05 54.5 16.9 116 79-208 141-277 (496)
306 3p5b_L Low density lipoprotein 94.8 5.8 0.0002 44.7 25.7 184 48-281 84-277 (400)
307 3m0c_C LDL receptor, low-densi 94.3 7.2 0.00025 48.1 26.8 195 36-281 385-589 (791)
308 3sov_A LRP-6, low-density lipo 94.1 3.2 0.00011 45.2 20.8 155 37-211 80-240 (318)
309 2xbg_A YCF48-like protein; pho 94.0 1.3 4.5E-05 48.5 17.6 154 32-206 159-319 (327)
310 4hw6_A Hypothetical protein, I 94.0 1.1 3.9E-05 51.3 17.5 156 79-280 141-303 (433)
311 3pbp_A Nucleoporin NUP82; beta 93.9 0.38 1.3E-05 53.8 12.5 105 37-142 67-206 (452)
312 2xzh_A Clathrin heavy chain 1; 93.9 8.5 0.00029 41.5 24.5 116 40-164 71-199 (365)
313 2p9w_A MAL S 1 allergenic prot 93.7 2.2 7.7E-05 46.2 17.8 157 494-700 24-214 (334)
314 4a0p_A LRP6, LRP-6, low-densit 93.1 19 0.00065 43.2 54.1 183 48-281 7-197 (628)
315 3sre_A PON1, serum paraoxonase 93.0 13 0.00044 40.9 25.3 157 33-209 47-252 (355)
316 2ism_A Putative oxidoreductase 92.0 6.7 0.00023 43.3 19.7 109 23-136 20-152 (352)
317 3a9g_A Putative uncharacterize 91.9 3.6 0.00012 45.5 17.2 98 36-135 29-151 (354)
318 1bpo_A Protein (clathrin); cla 91.5 21 0.00073 40.0 26.6 205 40-282 70-332 (494)
319 2g8s_A Glucose/sorbosone dehyd 90.1 3.7 0.00013 45.5 15.0 101 37-138 19-149 (353)
320 3kyq_A YKT6, synaptobrevin hom 89.8 0.023 7.9E-07 57.2 -3.1 55 1039-1096 138-192 (199)
321 1n7d_A LDL receptor, low-densi 89.5 1.3 4.5E-05 54.2 11.6 159 490-708 459-621 (699)
322 3s94_A LRP-6, low-density lipo 88.8 46 0.0016 39.7 50.9 178 55-281 16-202 (619)
323 3uc1_A DNA gyrase subunit A; D 88.4 31 0.0011 37.4 23.2 152 46-209 108-279 (327)
324 1cru_A Protein (soluble quinop 87.1 27 0.00092 39.9 20.0 60 78-137 28-99 (454)
325 3ott_A Two-component system se 85.9 72 0.0025 38.9 54.4 198 35-282 21-221 (758)
326 2xn4_A Kelch-like protein 2; s 85.8 11 0.00039 40.0 15.3 25 614-638 204-233 (302)
327 1tl2_A L10, protein (tachylect 85.6 1.9 6.5E-05 43.7 7.8 98 36-140 41-155 (236)
328 2ism_A Putative oxidoreductase 85.5 24 0.00083 38.6 18.1 60 36-95 75-153 (352)
329 3sre_A PON1, serum paraoxonase 85.2 48 0.0016 36.3 21.0 157 78-280 51-251 (355)
330 2vpj_A Kelch-like protein 12; 85.2 28 0.00095 36.8 18.1 152 46-215 62-237 (301)
331 3ott_A Two-component system se 84.6 82 0.0028 38.4 53.5 152 36-214 103-265 (758)
332 2vpj_A Kelch-like protein 12; 84.5 13 0.00046 39.4 15.1 109 494-638 112-235 (301)
333 1xi4_A Clathrin heavy chain; a 83.8 16 0.00054 47.3 16.6 105 40-147 70-187 (1630)
334 2xn4_A Kelch-like protein 2; s 83.7 27 0.00094 36.9 17.2 152 46-215 61-235 (302)
335 1cru_A Protein (soluble quinop 83.5 15 0.0005 42.1 15.4 98 37-134 28-160 (454)
336 3ii7_A Kelch-like protein 7; p 83.4 14 0.00046 39.5 14.5 25 614-638 200-229 (306)
337 3ii7_A Kelch-like protein 7; p 83.1 25 0.00087 37.3 16.6 109 46-155 55-183 (306)
338 3s25_A Hypothetical 7-bladed b 83.0 53 0.0018 35.0 19.5 142 44-215 22-182 (302)
339 2be1_A Serine/threonine-protei 82.7 8.9 0.00031 41.9 12.4 116 496-643 11-139 (339)
340 4asc_A Kelch repeat and BTB do 81.3 17 0.00059 38.9 14.4 25 614-638 196-225 (315)
341 3a9g_A Putative uncharacterize 81.3 42 0.0014 36.8 17.7 59 77-137 29-95 (354)
342 2g8s_A Glucose/sorbosone dehyd 80.2 28 0.00095 38.2 15.8 60 78-137 19-88 (353)
343 1tl2_A L10, protein (tachylect 77.8 3 0.0001 42.3 5.9 116 485-628 42-157 (236)
344 2woz_A Kelch repeat and BTB do 75.3 31 0.0011 36.9 14.1 64 494-568 109-185 (318)
345 1zgk_A Kelch-like ECH-associat 75.1 31 0.001 36.7 14.0 109 494-638 121-244 (308)
346 1zgk_A Kelch-like ECH-associat 75.1 70 0.0024 33.8 16.9 150 45-213 23-197 (308)
347 3das_A Putative oxidoreductase 73.8 54 0.0019 35.7 15.4 59 77-135 32-100 (347)
348 2be1_A Serine/threonine-protei 70.9 13 0.00046 40.4 9.6 116 89-218 11-139 (339)
349 4gq2_M Nucleoporin NUP120; bet 70.5 38 0.0013 42.8 15.0 37 78-114 237-273 (950)
350 1suu_A DNA gyrase subunit A; t 70.5 1.2E+02 0.004 32.4 24.4 202 45-281 6-231 (312)
351 3no0_A DNA gyrase subunit A; D 69.4 1.1E+02 0.0039 31.9 19.9 161 36-209 68-246 (276)
352 2woz_A Kelch repeat and BTB do 69.0 1.2E+02 0.0041 32.0 17.6 110 44-155 54-189 (318)
353 3sbq_A Nitrous-oxide reductase 67.4 18 0.00063 41.8 9.8 104 33-136 320-453 (638)
354 3das_A Putative oxidoreductase 65.1 43 0.0015 36.6 12.2 71 37-107 33-116 (347)
355 2uvk_A YJHT; unknown function, 63.6 37 0.0013 36.9 11.7 16 505-520 168-183 (357)
356 3s25_A Hypothetical 7-bladed b 63.0 1.6E+02 0.0054 31.2 20.6 102 41-149 109-215 (302)
357 4asc_A Kelch repeat and BTB do 62.9 1.6E+02 0.0053 31.1 20.4 155 42-215 41-227 (315)
358 3b7f_A Glycosyl hydrolase, BNR 61.9 1.3E+02 0.0045 33.0 16.1 156 35-200 54-254 (394)
359 1xi4_A Clathrin heavy chain; a 61.9 1.6E+02 0.0055 38.4 17.6 123 490-657 72-207 (1630)
360 1sfc_A VAMP 2, protein (synapt 60.5 11 0.00038 32.6 5.0 53 1055-1107 36-91 (96)
361 1zvt_A Topoisomerase IV subuni 59.9 1.1E+02 0.0037 31.7 13.7 149 48-209 3-163 (256)
362 2zwa_A Leucine carboxyl methyl 59.3 2.1E+02 0.0071 34.4 18.2 111 45-155 396-527 (695)
363 3b7f_A Glycosyl hydrolase, BNR 57.1 2.2E+02 0.0076 31.1 17.3 145 37-197 116-297 (394)
364 3sbq_A Nitrous-oxide reductase 56.9 60 0.002 37.7 11.5 84 539-635 325-409 (638)
365 4gq2_M Nucleoporin NUP120; bet 56.5 3.8E+02 0.013 33.5 25.2 135 80-216 114-273 (950)
366 2zwa_A Leucine carboxyl methyl 52.8 1.9E+02 0.0065 34.8 16.3 92 46-137 451-559 (695)
367 2xzh_A Clathrin heavy chain 1; 50.2 2.7E+02 0.0093 30.0 32.0 75 606-705 262-336 (365)
368 2uvk_A YJHT; unknown function, 47.3 2.9E+02 0.0099 29.5 18.0 21 494-514 19-40 (357)
369 3f7f_A Nucleoporin NUP120; nuc 46.2 50 0.0017 39.6 9.1 37 78-116 223-259 (729)
370 4fhn_B Nucleoporin NUP120; pro 46.0 48 0.0016 42.8 9.9 38 78-115 239-276 (1139)
371 2wg3_C Hedgehog-interacting pr 43.6 2.2E+02 0.0074 32.3 13.9 59 37-95 15-91 (463)
372 2l5g_B Putative uncharacterize 43.4 26 0.00088 24.7 3.5 36 1041-1079 4-39 (42)
373 1zi0_A DNA gyrase subunit A; b 40.8 3.5E+02 0.012 28.6 25.5 201 45-280 1-225 (307)
374 1sqj_A OXG-RCBH, oligoxylogluc 37.6 5.3E+02 0.018 31.3 17.2 152 35-199 14-190 (789)
375 3l6v_A GYRA, DNA gyrase subuni 37.5 4.4E+02 0.015 28.7 21.1 102 46-147 112-264 (370)
376 1wp5_A Topoisomerase IV; broke 35.4 4.3E+02 0.015 28.1 25.1 202 45-281 3-225 (323)
377 3etw_A Adhesin A; antiparallel 34.6 53 0.0018 29.4 5.1 49 1055-1103 33-83 (119)
378 3mvd_K Regulator of chromosome 34.1 5.1E+02 0.017 28.5 30.2 110 78-208 76-206 (423)
379 3l6v_A GYRA, DNA gyrase subuni 32.4 5.2E+02 0.018 28.1 25.8 151 45-209 5-180 (370)
380 2wg3_C Hedgehog-interacting pr 31.5 3.3E+02 0.011 30.8 12.9 57 79-135 16-89 (463)
381 2avr_X Adhesion A; antiparalle 27.8 93 0.0032 27.7 5.4 48 1055-1102 33-82 (119)
382 3hd7_A Vesicle-associated memb 27.5 88 0.003 26.5 5.3 52 1056-1107 12-66 (91)
383 3uc1_A DNA gyrase subunit A; D 27.1 5.9E+02 0.02 27.1 24.5 211 38-281 44-279 (327)
384 3ryc_E Stathmin-4; alpha-tubul 26.7 1.9E+02 0.0065 26.6 7.5 63 1037-1102 41-105 (143)
385 3efd_K KCSA; helix bundle, C-t 26.2 75 0.0026 20.0 3.2 20 1056-1075 7-26 (30)
386 3b5n_A Synaptobrevin homolog 1 25.2 1.2E+02 0.0041 23.4 5.3 47 1056-1102 9-55 (61)
387 4fhn_B Nucleoporin NUP120; pro 24.5 1.3E+02 0.0045 38.7 8.7 37 178-216 239-275 (1139)
388 1n7s_A Vesicle-associated memb 23.0 1.4E+02 0.0048 23.2 5.3 47 1056-1102 11-57 (63)
389 1olz_A Semaphorin 4D; developm 22.8 4.1E+02 0.014 31.6 11.8 72 604-696 397-477 (663)
390 3kci_A Probable E3 ubiquitin-p 22.0 7.7E+02 0.026 26.6 28.1 145 47-207 62-239 (389)
391 3qhy_B Beta-lactamase inhibito 21.7 6.7E+02 0.023 25.8 18.3 102 37-147 64-167 (282)
392 1gl2_A Endobrevin; membrane pr 20.7 2.1E+02 0.0072 22.4 5.9 48 1055-1102 15-62 (65)
393 1bpo_A Protein (clathrin); cla 20.6 9.3E+02 0.032 27.0 34.6 75 606-705 261-335 (494)
394 3of7_A Regulator of chromosome 20.6 9.1E+02 0.031 26.9 29.4 27 78-106 68-94 (473)
No 1
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-64 Score=645.42 Aligned_cols=778 Identities=15% Similarity=0.176 Sum_probs=534.8
Q ss_pred cccccceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcE
Q 001279 21 AADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1108)
Q Consensus 21 ~~~~~~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I 100 (1108)
++.++++...++||++.|++++|+|++++||+|+.||.|+||+....+......|..+|.+|+|+| +.+|++++.|++|
T Consensus 3 ~~~~~~~~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 3 NKIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp CTTEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEE
T ss_pred hheeeeccccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeE
Confidence 567899999999999999999999999999999999999999999888887788999999999999 6799999999999
Q ss_pred EEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 101 QVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 101 ~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
+|||+.+++.+..+.+...|++++|+|+++++++|+.||.|++|+++. +.+. +|.++... ........+.++|+
T Consensus 82 ~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~--~~~~--~~~i~~~~--~~~~~~~~h~~~V~ 155 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR--DQLS--SFKLDNLQ--KSSFFPAARLSPIV 155 (902)
T ss_dssp EEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTT--TEEE--EEEECCHH--HHHTCSSSCCCCCC
T ss_pred EEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC--Cccc--cceecccc--ccccccccCCCCeE
Confidence 999999999988888889999999999999999999999999999874 3442 34442110 00011233447899
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
+++|+|. ++..|++|+.||.| +||+++++.+..+... . +.+.+...... .....+...|++++|. |
T Consensus 156 sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~-------~---~~g~~~~~~~~-~~~~~h~~~V~~v~fs-p 221 (902)
T 2oaj_A 156 SIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYE-------L---PPFAPGGDFSE-KTNEKRTPKVIQSLYH-P 221 (902)
T ss_dssp EEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCC-------B---CTTCCCSTTCC-CTTSCBCCCEEEEEEC-T
T ss_pred EEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecc-------c---CCcCCCccccc-ccccccCCCeEEEEEc-C
Confidence 9999995 34569999999999 9999999876654320 0 01111110000 1111235679999986 9
Q ss_pred CCCEEEEEEccCcEEEEecCCCCCCCC--ccC-CCCCceeeeecccc--cCCccEEEEEeecccccccCCCceEEEEeCC
Q 001279 261 SGSILAVGYIDGDILLWNTSTTASTKG--QQT-GSRNNVVKLELSSA--ERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 335 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~~~~~~--~~~-~~~~~~~kl~~~~~--~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~ 335 (1108)
+|.+|++|+.||+|++||+.+++.... ... ....+.. ....+ ....+|..+.|+... .+.++.++++|+.
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~--~~~~~~~~~~~~V~~v~w~~~~---~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP--DYIRDSSTNAAKISKVYWMCEN---NPEYTSLLISHKS 296 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCT--TCCCCCSSCCCEEEEEEEEECS---STTEEEEEEEEEC
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCC--cCCCCCccccCCeeEEEEEecC---CCCCCEEEEeCCC
Confidence 999999999999999999987642210 000 0000000 00000 123467788786632 2333577888866
Q ss_pred CCCC-cceEEEEecccccc------------ccccceeeeeecCCCCccceEEEecCCCC--CCCCCcceEEEEcCCCeE
Q 001279 336 EIGS-EEVLTVLSLEWSSG------------MENLRCVSRVDITLTGSFADMILLSSAGA--TVGNHKADLFVLTSPGQL 400 (1108)
Q Consensus 336 ~~~~-~~~ltvl~l~~~~~------------~~~~~~~~~~~l~~~~~v~~~~~~p~~~~--~~~~~~~~l~vl~~~G~l 400 (1108)
+... ..++.++.+..+.. .....+...+.+.....+.++.+.++..+ .+.+++..+++++.+|.+
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 5322 13444444321100 00111222233345678899999885333 244566678888899999
Q ss_pred EEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccC
Q 001279 401 HFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSG 480 (1108)
Q Consensus 401 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g 480 (1108)
.+|+..... ........+..+..+.+.++++.+..... ..|....... ....|++.|
T Consensus 377 ~~~~~~~g~---------~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----~~w~~~~~~~---------~~~~~~l~G 433 (902)
T 2oaj_A 377 ETMLYPSGI---------FTDKASLFPQNLSWLRPLATTSMAASVPN-----KLWLGALSAA---------QNKDYLLKG 433 (902)
T ss_dssp EEEETTTCC---------EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----HHHHHHHHTT---------BCCCCSCCC
T ss_pred EEEECCCCC---------cccccccCCCcccccCCCeeEEEEEEcCH-----HHHHHHHhcc---------cCCCCcccC
Confidence 999853211 11112233556667888999988865432 3565544332 123467777
Q ss_pred CcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeec-----cCCCCCeEEEEEEeCCCeEEEEe
Q 001279 481 GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-----AGSRAPVSTLSFCFINSSLAVGN 555 (1108)
Q Consensus 481 g~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l-----~~h~~~Vt~lafs~d~~~Lasg~ 555 (1108)
+.... ..++++|++++|+||+.||+||+||+.++.+... ......+ .+|...|++|+|+||+++||+|+
T Consensus 434 ~~~~v-~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-----~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs 507 (902)
T 2oaj_A 434 GVRTK-RQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-----ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI 507 (902)
T ss_dssp SBCCC-CCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-----BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE
T ss_pred CcCCC-CcccccccCcEEEEecCCCcEEEEECCCccccCC-----ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe
Confidence 66544 3458999999999999999999999998764210 1111112 28999999999999999999999
Q ss_pred cCceEEEEEecCCCC----------Cccccc----cccCccceeec------ccCCcceEEEEEeecCcCEEEEEEcCCC
Q 001279 556 EFGLVYIYNLNGSLD----------AKNFLF----VLETKSEVHAL------PEGKISLCRAVFSLVNSPVRALQFTSSG 615 (1108)
Q Consensus 556 ~dG~V~lw~l~~~~~----------~~~~~~----~~~~~~~~~~~------~~~~g~~~~~~~~~h~~~Vtslafspdg 615 (1108)
.||+|+||++..... +.+..| +.........+ ....+++++..+.+|.+.|++|+|||||
T Consensus 508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG 587 (902)
T 2oaj_A 508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG 587 (902)
T ss_dssp TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS
T ss_pred cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc
Confidence 999999999986532 100111 11111111110 1133678899999999999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCceEEEEe--ecCC-CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCc
Q 001279 616 AKLAVGFECGRVAVLDMNLLSVLFFT--DDIS-GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDA 692 (1108)
Q Consensus 616 ~~LavGs~dG~V~vwd~~~~~~~~~~--~~~~-~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg 692 (1108)
+||+|+.||+|+|||+.++.+++.. ..+. +|.+.|++++|+-.... +.++++.+|++|+.|+
T Consensus 588 -~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~--------------~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 588 -FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG--------------DDGYSSILMVCGTDMG 652 (902)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT--------------TSSSEEEEEEEEETTS
T ss_pred -EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC--------------CCCCcceEEEEEecCC
Confidence 9999999999999999999887643 3454 89999999999932221 0012358999999999
Q ss_pred cEEEEeC---CCcceecCCC--CcccccceeeEEEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccc
Q 001279 693 KISIVGG---SSENMISSSP--WHLKKKVIAISMEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHL 767 (1108)
Q Consensus 693 ~v~v~d~---~~g~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1108)
+|++||. .+|+.+.... ...++...++.+..++.... .+.... +
T Consensus 653 tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~~~a~-----~------------------------- 701 (902)
T 2oaj_A 653 EVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETK-SSCLAT-----I------------------------- 701 (902)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTC-CBCBCB-----H-------------------------
T ss_pred cEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCC-CcccCC-----H-------------------------
Confidence 9999998 7888654331 11222344555555542211 000000 0
Q ss_pred cccccccCCCCCCCcEEEEEecCeeEEEecccccccccceeeeecCCCcceeeee--ee------cCCceeEEEEEeecC
Q 001279 768 FSSENACSGESSNDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWAST--IE------KDEKVCGLLLLFQTG 839 (1108)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~c~e~~~~v~sl~~~~~g~~~~~~k~~~~~~~~~~~~--~~------~~~~~~~l~~~~~~G 839 (1108)
...+ ....+...+.++|+|+|+.+|||++++ .++++|. +..+||++.+ |. ..+++++|+++++||
T Consensus 702 ~~~~-~l~~~~~~~~~~l~~~~~~ir~~~~~~-----~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g 774 (902)
T 2oaj_A 702 PKMQ-NLSKGLCIPGIVLITGFDDIRLITLGK-----SKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEING 774 (902)
T ss_dssp HHHH-GGGGTCCCCEEEEEECSSEEEEECTTC-----CCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTS
T ss_pred HHHh-ccCCCCCCCeEEEEEeccceEEEeCcc-----ccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCC
Confidence 0000 000111237799999999999999998 5788887 7777999888 55 346799999999999
Q ss_pred cEEEeecCCccccccccccceeeceecCccccccccC-CCcEE-EEcCceeEEEEeecCCCceeccCCCCcchhh
Q 001279 840 AVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQIT-LANGSEVAFVNLLAGENEFSILESSPCLHDK 912 (1108)
Q Consensus 840 ~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Gq~~-l~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~ 912 (1108)
+|+|||||+|+.+...++..+++.+ .+...||+ +|+++ ++++.|+++++++.++..++-+ ...||.+
T Consensus 775 ~i~~~s~p~l~~~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~l~~~ 843 (902)
T 2oaj_A 775 HLRVFTIPDFKEQMSEHIPFPIAAK----YITESSVLRNGDIAIRVSEFQASLFSTVKEQDTLAPV--SDTLYIN 843 (902)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCHH----HHTTCEECTTSCEEEECSSSEEEEEEEESCCCCCCCC--CCBCCCT
T ss_pred cEEEEECcchHHHhhccCCcccccc----cccceEEcCCCCEEEEeChhheEEEEEEcCCCCCCCC--CceeeCC
Confidence 9999999999999988765533332 35667899 99955 4666999999999887777644 4788987
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.6e-49 Score=482.12 Aligned_cols=562 Identities=14% Similarity=0.202 Sum_probs=418.3
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
...||.+.|+|++|+|||++||+|+.||.|+|||.++.....+.+|..+|++|+|+||+.+|++++.|++|+|||+....
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~ 90 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 90 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCE
Confidence 34699999999999999999999999999999998877777888999999999999999999999999999999975544
Q ss_pred eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 110 ~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
+.....|...|++++|+|++++|++++.|+.+++|+... ... .....+. ..|.++.++| +
T Consensus 91 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~---~~~---~~~~~~~------------~~v~~~~~~~--~ 150 (577)
T 2ymu_A 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLL---QTLTGHS------------SSVWGVAFSP--D 150 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---CEE---EEECCCS------------SCEEEEEECT--T
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccc---cee---eeccCCC------------Cceeeeeeec--C
Confidence 444447889999999999999999999999999998643 222 1233333 6799999988 6
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
+..++.++.++.+++|+...........+ ...|.+++|. |++.+|++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~ 199 (577)
T 2ymu_A 151 GQTIASASDDKTVKLWNRNGQLLQTLTGH------------------------------SSSVWGVAFS-PDGQTIASAS 199 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSCEEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEE
T ss_pred CccceecccccceeccccceeeeeeccCC------------------------------Ccceeeeeec-CCCCEEEEEc
Confidence 77799999999999999877766666555 7789999975 9999999999
Q ss_pred ccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecc
Q 001279 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1108)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~ 349 (1108)
.||.|++||.... .+..+.. ...++..+ ++.+++.++++++.++ .+++|
T Consensus 200 ~d~~v~~w~~~~~------------~~~~~~~----~~~~v~~~--------~~s~dg~~l~~~~~d~-------~i~~w 248 (577)
T 2ymu_A 200 DDKTVKLWNRNGQ------------LLQTLTG----HSSSVRGV--------AFSPDGQTIASASDDK-------TVKLW 248 (577)
T ss_dssp TTSEEEEECTTSC------------EEEEEEC----CSSCEEEE--------EECTTSSCEEEEETTS-------CEEEE
T ss_pred CCCEEEEEeCCCc------------EEEEEec----CCCCEEEE--------EECCCCCEEEEEeCCC-------EEEEE
Confidence 9999999996421 1111111 11233332 3667888899998887 77888
Q ss_pred ccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCcc
Q 001279 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1108)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1108)
...+. .+ .........+..+.+.|+.. .++..+.++.+.+|+.......
T Consensus 249 ~~~~~-~~----~~~~~~~~~v~~v~~~~d~~--------~l~~~~~d~~i~~w~~~~~~~~------------------ 297 (577)
T 2ymu_A 249 NRNGQ-LL----QTLTGHSSSVNGVAFRPDGQ--------TIASASDDKTVKLWNRNGQLLQ------------------ 297 (577)
T ss_dssp CTTSC-EE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEE------------------
T ss_pred eCCCC-EE----EEEecCCCCEEEEEEcCCCC--------EEEEEeCCCEEEEEeCCCcEEE------------------
Confidence 65431 11 11223445788888888732 5666778888888873211000
Q ss_pred ccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEE
Q 001279 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1108)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVri 509 (1108)
...++...+..++++|+++.+++++.||+|++
T Consensus 298 ------------------------------------------------~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 298 ------------------------------------------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp ------------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ------------------------------------------------EEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 00122233344578899999999999999999
Q ss_pred EeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeeccc
Q 001279 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1108)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1108)
||.....+. .+.+|...|++++|+|++++|++++.||.|++|+....
T Consensus 330 w~~~~~~~~------------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--------------------- 376 (577)
T 2ymu_A 330 WNRNGQHLQ------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------------- 376 (577)
T ss_dssp EETTSCEEE------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC---------------------
T ss_pred EeCCCCeeE------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC---------------------
Confidence 998766543 35688899999999999999999999999999996443
Q ss_pred CCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCC
Q 001279 590 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNP 669 (1108)
Q Consensus 590 ~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p 669 (1108)
++..+..|...|++++|+|++++||+|+.|+.|++||..+. .+ ..+.+|..+|.+++|+
T Consensus 377 -----~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~-~~---~~~~~~~~~v~~~~~s------------ 435 (577)
T 2ymu_A 377 -----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LL---QTLTGHSSSVWGVAFS------------ 435 (577)
T ss_dssp -----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC-EE---EEEECCSSCEEEEEEC------------
T ss_pred -----EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-EE---EEecCCCCCeEEEEEC------------
Confidence 56677899999999999999999999999999999997654 33 2456799999999999
Q ss_pred CCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCCccccccchhhhhccCCC
Q 001279 670 NHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIAEPVCGFPIEKQAEQSAEENAAKNK 749 (1108)
Q Consensus 670 ~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1108)
|++.+|++++.|++|.+||.. ++.+... ..
T Consensus 436 ----------~d~~~l~~~~~d~~v~~w~~~-~~~~~~~----------------~~----------------------- 465 (577)
T 2ymu_A 436 ----------PDDQTIASASDDKTVKLWNRN-GQLLQTL----------------TG----------------------- 465 (577)
T ss_dssp ----------TTSSEEEEEETTSEEEEEETT-SCEEEEE----------------EC-----------------------
T ss_pred ----------CCCCEEEEEcCCCEEEEEECC-CCEEEEE----------------cC-----------------------
Confidence 568899999999999999963 3433211 00
Q ss_pred CCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC-eeEEEecccccccccceeeeecCCCcceeeeeeecCCc
Q 001279 750 PTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEK 828 (1108)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~-~~~v~sl~~~~~g~~~~~~k~~~~~~~~~~~~~~~~~~ 828 (1108)
|...+....+.+. ..+++++++| .+++|++.. ..++...-....+.+..|. ++
T Consensus 466 ----------------~~~~v~~~~~spd--~~~las~~~d~~i~iw~~~~------~~~~~~~~h~~~v~~l~~s--~d 519 (577)
T 2ymu_A 466 ----------------HSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFS--PD 519 (577)
T ss_dssp ----------------CSSCEEEEEECTT--SCEEEEEETTSEEEEEETTS------CEEEEEECCSSCEEEEEEC--TT
T ss_pred ----------------CCCCEEEEEEcCC--CCEEEEEeCCCEEEEEcCCC------CEEEEEeCCCCCEEEEEEc--CC
Confidence 1111222334433 6688999888 899998643 2333322111112222222 45
Q ss_pred eeEEEEEeecCcEEEeecCCccccccccccceeeceecCccccccccC-CCcEEEEcC-ceeEEE
Q 001279 829 VCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFV 891 (1108)
Q Consensus 829 ~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Gq~~l~~~-~e~~~~ 891 (1108)
+..|++...||.|+||+++. +.+.. ..-|.+.+..++|| ||+++++++ |...++
T Consensus 520 g~~l~s~~~dg~v~lwd~~~-~~~~~--------~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNRNG-QLLQT--------LTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp SSCEEEEETTSEEEEECTTS-CEEEE--------EECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCEEEEEECcCEEEEEeCCC-CEEEE--------EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 77899999999999999754 22221 23367778999999 999888877 665443
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-45 Score=448.32 Aligned_cols=525 Identities=14% Similarity=0.220 Sum_probs=398.3
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
...||.+.|++++|+|++++||+|+.||.|+|||..+.....+..|..+|.+++|+|++.+|++++.|+.+++|+.....
T Consensus 52 ~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~ 131 (577)
T 2ymu_A 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 131 (577)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce
Confidence 34689999999999999999999999999999999887777888999999999999999999999999999999998877
Q ss_pred eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 110 ~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
......+...|.++.+++++..++.++.++.+++|..+. ... .....+. ..|.++.|+| +
T Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~------------~~v~~~~~~~--~ 191 (577)
T 2ymu_A 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLL---QTLTGHS------------SSVWGVAFSP--D 191 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---CEE---EEEECCS------------SCEEEEEECT--T
T ss_pred eeeccCCCCceeeeeeecCCccceecccccceeccccce---eee---eeccCCC------------cceeeeeecC--C
Confidence 777778889999999999999999999999998887542 222 1133333 7799999988 6
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
+.+|++++.||.|++||........+.+| ...|++++|. |+|.+|++++
T Consensus 192 ~~~l~~~~~d~~v~~w~~~~~~~~~~~~~------------------------------~~~v~~~~~s-~dg~~l~~~~ 240 (577)
T 2ymu_A 192 GQTIASASDDKTVKLWNRNGQLLQTLTGH------------------------------SSSVRGVAFS-PDGQTIASAS 240 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSCEEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEE
T ss_pred CCEEEEEcCCCEEEEEeCCCcEEEEEecC------------------------------CCCEEEEEEC-CCCCEEEEEe
Confidence 78899999999999999866655556666 7789999975 9999999999
Q ss_pred ccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecc
Q 001279 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1108)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~ 349 (1108)
.||.|++||.... .+..+.. ...++..+ .+.+++..+++++.+. .+.+|
T Consensus 241 ~d~~i~~w~~~~~------------~~~~~~~----~~~~v~~v--------~~~~d~~~l~~~~~d~-------~i~~w 289 (577)
T 2ymu_A 241 DDKTVKLWNRNGQ------------LLQTLTG----HSSSVNGV--------AFRPDGQTIASASDDK-------TVKLW 289 (577)
T ss_dssp TTSCEEEECTTSC------------EEEEECC----CSSCEEEE--------EECTTSSEEEEEETTS-------CEEEE
T ss_pred CCCEEEEEeCCCC------------EEEEEec----CCCCEEEE--------EEcCCCCEEEEEeCCC-------EEEEE
Confidence 9999999996422 1111111 12233333 3567888999998887 67777
Q ss_pred ccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCcc
Q 001279 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1108)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1108)
...+. .+ +........+.++.+.|+.. .++....+|.+.+|+........
T Consensus 290 ~~~~~-~~----~~~~~h~~~v~~~~~~~~~~--------~l~t~~~d~~i~~w~~~~~~~~~----------------- 339 (577)
T 2ymu_A 290 NRNGQ-LL----QTLTGHSSSVWGVAFSPDGQ--------TIASASDDKTVKLWNRNGQHLQT----------------- 339 (577)
T ss_dssp ETTSC-EE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEEE-----------------
T ss_pred eCCCc-EE----EEEecCCCCeEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCeeEE-----------------
Confidence 65431 11 11223455788888888742 56667788888888732211000
Q ss_pred ccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEE
Q 001279 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1108)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVri 509 (1108)
+ .++...+..++++|+++++++|+.||+|++
T Consensus 340 ------------------------------------------------~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 340 ------------------------------------------------L-TGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp ------------------------------------------------E-CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ------------------------------------------------E-eCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 0 112223334578899999999999999999
Q ss_pred EeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeeccc
Q 001279 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1108)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1108)
||.....+. .+.+|...|++++|+|++++|++++.|+.|+||+....
T Consensus 371 ~~~~~~~~~------------~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~--------------------- 417 (577)
T 2ymu_A 371 WNRNGQLLQ------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------------- 417 (577)
T ss_dssp EETTCCEEE------------EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC---------------------
T ss_pred EcCCCCEEE------------EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC---------------------
Confidence 997654322 36689999999999999999999999999999985442
Q ss_pred CCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCC
Q 001279 590 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNP 669 (1108)
Q Consensus 590 ~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p 669 (1108)
++..+..|...|++++|+|++++|++|+.|++|++||..+..+. .+.+|..+|.+++|+
T Consensus 418 -----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~----~~~~~~~~v~~~~~s------------ 476 (577)
T 2ymu_A 418 -----LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVRGVAFS------------ 476 (577)
T ss_dssp -----EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEE----EEECCSSCEEEEEEC------------
T ss_pred -----EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEE----EEcCCCCCEEEEEEc------------
Confidence 45677899999999999999999999999999999998665433 456799999999999
Q ss_pred CCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCCccccccchhhhhccCCC
Q 001279 670 NHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIAEPVCGFPIEKQAEQSAEENAAKNK 749 (1108)
Q Consensus 670 ~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1108)
|++.+|++++.|+.|++||. +|+++... .+
T Consensus 477 ----------pd~~~las~~~d~~i~iw~~-~~~~~~~~----------------~~----------------------- 506 (577)
T 2ymu_A 477 ----------PDGQTIASASDDKTVKLWNR-NGQLLQTL----------------TG----------------------- 506 (577)
T ss_dssp ----------TTSCEEEEEETTSEEEEEET-TSCEEEEE----------------EC-----------------------
T ss_pred ----------CCCCEEEEEeCCCEEEEEcC-CCCEEEEE----------------eC-----------------------
Confidence 66889999999999999995 55544322 10
Q ss_pred CCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC-eeEEEecccccccccceeeeecCCCcceeeeeeecCCc
Q 001279 750 PTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEK 828 (1108)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~-~~~v~sl~~~~~g~~~~~~k~~~~~~~~~~~~~~~~~~ 828 (1108)
|...+....|.+. ..+++++++| .|+||.++. ..++...--..-+++..|.. +
T Consensus 507 ----------------h~~~v~~l~~s~d--g~~l~s~~~dg~v~lwd~~~------~~~~~~~~h~~~v~~~~fs~--d 560 (577)
T 2ymu_A 507 ----------------HSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVWGVAFSP--D 560 (577)
T ss_dssp ----------------CSSCEEEEEECTT--SSCEEEEETTSEEEEECTTS------CEEEEEECCSSCEEEEEECT--T
T ss_pred ----------------CCCCEEEEEEcCC--CCEEEEEECcCEEEEEeCCC------CEEEEEcCCCCCEEEEEEcC--C
Confidence 1112222334443 6689999988 899998654 23333321122334444444 4
Q ss_pred eeEEEEEeecCcEEEee
Q 001279 829 VCGLLLLFQTGAVQIRS 845 (1108)
Q Consensus 829 ~~~l~~~~~~G~i~i~s 845 (1108)
+..|+++..||+|++|+
T Consensus 561 g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCEEEEeC
Confidence 66899999999999995
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.6e-44 Score=442.40 Aligned_cols=524 Identities=10% Similarity=0.116 Sum_probs=361.2
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC----cEEEE
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDN----EIQVW 103 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~----~I~vW 103 (1108)
..||...|++++|+|++++||+|+.||.|+|||.... .......|.++|.+++|+|++.+|++++.+. .|++|
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe
Confidence 3489999999999999999999999999999998532 2335678999999999999999999998753 56666
Q ss_pred EcCCCeeeeee-cCCCCeeEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001279 104 SLESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 104 d~~s~~~~~~~-~~~~~Itsl~~~~~~~-~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
| ++.....+ .|...|++++|+|+++ +|++|+.|++|++|+... +++. ..+.+|. ..|.+
T Consensus 135 d--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~--~~~~---~~l~~H~------------~~V~~ 195 (611)
T 1nr0_A 135 D--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--FKFK---STFGEHT------------KFVHS 195 (611)
T ss_dssp T--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--BEEE---EEECCCS------------SCEEE
T ss_pred e--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC--CeEe---eeecccc------------CceEE
Confidence 6 45554444 6888999999999987 699999999999998643 3443 3366666 88999
Q ss_pred EecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC
Q 001279 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1108)
++|+| ++.+|++++.|++|+|||+.+++....+.... .. ...+...|++++|. |+
T Consensus 196 v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--~~--------------------~~~h~~~V~~v~~s-pd 250 (611)
T 1nr0_A 196 VRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--LK--------------------NVAHSGSVFGLTWS-PD 250 (611)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTT--SS--------------------SCSSSSCEEEEEEC-TT
T ss_pred EEECC--CCCEEEEEECCCcEEEEECCCCcEeeeecccc--cc--------------------ccccCCCEEEEEEC-CC
Confidence 99999 78899999999999999999887765441100 00 00127789999985 99
Q ss_pred CCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcc
Q 001279 262 GSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEE 341 (1108)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~ 341 (1108)
|++|++++.||+|++||+.+++.. ..+..... .......+.| ++..
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~-----------~~~~~~~~-~~~~~~~~~~----------~~~~------------ 296 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVE-----------KTIPVGTR-IEDQQLGIIW----------TKQA------------ 296 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEE-----------EEEECCSS-GGGCEEEEEE----------CSSC------------
T ss_pred CCEEEEEeCCCeEEEEeCCCCcee-----------eeecCCCC-ccceeEEEEE----------cCCE------------
Confidence 999999999999999999765211 11110000 0000111100 1122
Q ss_pred eEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCC
Q 001279 342 VLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSV 421 (1108)
Q Consensus 342 ~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~ 421 (1108)
++....+|.+.+|+.......
T Consensus 297 -------------------------------------------------l~s~s~d~~i~~~~~~~~~~~---------- 317 (611)
T 1nr0_A 297 -------------------------------------------------LVSISANGFINFVNPELGSID---------- 317 (611)
T ss_dssp -------------------------------------------------EEEEETTCCEEEEETTTTEEE----------
T ss_pred -------------------------------------------------EEEEeCCCcEEEEeCCCCCcc----------
Confidence 333344455555552111000
Q ss_pred CCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEE
Q 001279 422 CPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAG 501 (1108)
Q Consensus 422 ~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatg 501 (1108)
....||...+..++++|++++|++|
T Consensus 318 -------------------------------------------------------~~~~gh~~~v~~l~~spdg~~l~s~ 342 (611)
T 1nr0_A 318 -------------------------------------------------------QVRYGHNKAITALSSSADGKTLFSA 342 (611)
T ss_dssp -------------------------------------------------------EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred -------------------------------------------------------eEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 0112333445556889999999999
Q ss_pred ecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCcccc------
Q 001279 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL------ 575 (1108)
Q Consensus 502 s~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~------ 575 (1108)
+.||+|++||+.++.+.. ....+|...|++++|++++ .|++++.|+.+++|+...........
T Consensus 343 s~D~~v~~Wd~~~~~~~~----------~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~ 411 (611)
T 1nr0_A 343 DAEGHINSWDISTGISNR----------VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS 411 (611)
T ss_dssp ETTSCEEEEETTTCCEEE----------CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred eCCCcEEEEECCCCceee----------ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecC
Confidence 999999999999877541 1125788999999999665 78899999999999987643221100
Q ss_pred -------ccccC-------ccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEe
Q 001279 576 -------FVLET-------KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1108)
Q Consensus 576 -------~~~~~-------~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~ 641 (1108)
|.+.. ...+..+..+ . +..+ .|...|++++|+|+|++||+|+.||+|+|||+.++.+...
T Consensus 412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~~~---~-~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~- 485 (611)
T 1nr0_A 412 SQPLGLAVSADGDIAVAACYKHIAIYSHG---K-LTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV- 485 (611)
T ss_dssp SCEEEEEECTTSSCEEEEESSEEEEEETT---E-EEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE-
T ss_pred CCCcEEEEeCCCcEEEEEeCceEEEEeCC---c-eeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee-
Confidence 00000 0011111111 1 1222 3778899999999999999999999999999988764321
Q ss_pred ecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC-cceecCCCCcccccceeeE
Q 001279 642 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS-ENMISSSPWHLKKKVIAIS 720 (1108)
Q Consensus 642 ~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~-g~~l~~~~~~~~~~~~~~~ 720 (1108)
.. .+|...|.+++|+ |++.+|++++.|++|++||..+ ++++..... .
T Consensus 486 ~~-~~h~~~v~~v~fs----------------------pdg~~las~s~d~~v~~w~~~~~~~~~~~~~~--~------- 533 (611)
T 1nr0_A 486 KT-IVHPAEITSVAFS----------------------NNGAFLVATDQSRKVIPYSVANNFELAHTNSW--T------- 533 (611)
T ss_dssp EE-EECSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEEGGGTTEESCCCCC--C-------
T ss_pred ec-cCCCCceEEEEEC----------------------CCCCEEEEEcCCCCEEEEEcCCCCceeeeeee--e-------
Confidence 22 4699999999999 6689999999999999999876 544322100 0
Q ss_pred EEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC-eeEEEeccc
Q 001279 721 MEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKS 799 (1108)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~-~~~v~sl~~ 799 (1108)
.|...+..+.|.+. ..++++++.| .||||.+..
T Consensus 534 --------------------------------------------~H~~~V~~v~fspd--g~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 534 --------------------------------------------FHTAKVACVSWSPD--NVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp --------------------------------------------CCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTC
T ss_pred --------------------------------------------ecccceeEEEECCC--CCEEEEEECCCcEEEEECCC
Confidence 02333444556655 7799999988 999999876
Q ss_pred ccccccceeeeec-CCCcceeeeeeecCCceeEEEEEeecCcEEEeecC
Q 001279 800 VIQGNNKTVQKVK-HKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLP 847 (1108)
Q Consensus 800 ~~~g~~~~~~k~~-~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp 847 (1108)
. .+..+.... +....+++..|..+ +. |++...||+|++|++|
T Consensus 568 ~---~~~~~~~~~~h~~~~v~~v~fs~d--~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 568 P---SDHPIIIKGAHAMSSVNSVIWLNE--TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp T---TSCCEEETTSSTTSCEEEEEEEET--TE-EEEEETTSCEEEEECC
T ss_pred c---ccccchhhccCcccCeeEEEEcCC--CE-EEEecCCCCEEEEecc
Confidence 2 111112111 21233444445543 44 9999999999999986
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-43 Score=473.40 Aligned_cols=620 Identities=10% Similarity=0.065 Sum_probs=429.5
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
....||...|++++|+|++++||+|+.||.|+||+....+ ......|..+|.+++|+|++.+|++++.|+.|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 3456899999999999999999999999999999996654 446778999999999999999999999999999999999
Q ss_pred Ceeeeee-cCCCCeeEEEEec--CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 108 RSLACCL-KWESNITAFSVIS--GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 108 ~~~~~~~-~~~~~Itsl~~~~--~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
++.+..+ .|...|++++|++ +..++++|+.||.|++|+++. +... ..+.+|. ..|.+++|
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~---~~~~~h~------------~~v~~~~~ 751 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--KECR---NTMFGHT------------NSVNHCRF 751 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS--SSEE---EEECCCS------------SCEEEEEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC--cchh---heecCCC------------CCEEEEEE
Confidence 9988777 6888999999999 456899999999999999865 3443 2355665 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
+| ++..|++++.||.|++||+.+++............. ... ........|.+++|. |+|..
T Consensus 752 sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~~v~~~~~s-~dg~~ 812 (1249)
T 3sfz_A 752 SP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLS-------SED---------PPEDVEVIVKCCSWS-ADGDK 812 (1249)
T ss_dssp CS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC------------------------CCCCCBCCCCBC-TTSSE
T ss_pred ec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccc-------cCC---------ccccccceEEEEEEC-CCCCE
Confidence 98 688899999999999999999876554322111110 000 000114578889975 99999
Q ss_pred EEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEE
Q 001279 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~lt 344 (1108)
+++++ +|.+.+||..++.... .+... ...++.. +++++++.++++++.++
T Consensus 813 l~~~~-~~~v~~~d~~~~~~~~-----------~~~~~---~~~~v~~--------~~~sp~~~~l~~~~~dg------- 862 (1249)
T 3sfz_A 813 IIVAA-KNKVLLFDIHTSGLLA-----------EIHTG---HHSTIQY--------CDFSPYDHLAVIALSQY------- 862 (1249)
T ss_dssp EEEEE-TTEEEEEETTTCCEEE-----------EEECS---SSSCCCE--------EEECSSTTEEEEECSSS-------
T ss_pred EEEEc-CCcEEEEEecCCCcee-----------EEcCC---CCCceEE--------EEEcCCCCEEEEEeCCC-------
Confidence 99887 7899999998663211 11111 1112222 23667888999998887
Q ss_pred EEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCc
Q 001279 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPV 424 (1108)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~ 424 (1108)
.+.+|.......+ .........+..+.+.|+.. .++..+.+|.+.+|+.......... ..
T Consensus 863 ~v~vwd~~~~~~~----~~~~~h~~~v~~v~~spdg~--------~l~s~s~dg~v~vw~~~~~~~~~~~--------~~ 922 (1249)
T 3sfz_A 863 CVELWNIDSRLKV----ADCRGHLSWVHGVMFSPDGS--------SFLTASDDQTIRVWETKKVCKNSAI--------VL 922 (1249)
T ss_dssp CEEEEETTTTEEE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEEHHHHHSCCSS--------SE
T ss_pred eEEEEEcCCCcee----eecCCCccceEEEEECCCCC--------EEEEEeCCCeEEEEEccccceeeee--------cc
Confidence 6777765432222 11123445788999988743 5777788999999985432111000 00
Q ss_pred cCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecC
Q 001279 425 EFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD 504 (1108)
Q Consensus 425 ~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~D 504 (1108)
.......+........... .... ...+. .. .. .........+.+++++|+++++++|+.|
T Consensus 923 ~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~------~~-------~~---~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 923 KQEIDVVFQENETMVLAVD---NIRG-LQLIA------GK-------TG---QIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp EEEEEEEEETTEEEEEEEE---SSSS-EEEEE------ES-------SC---CEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred cceeeEEEcCCCcEEEEec---CCcc-eEEEe------cC-------cc---eEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 0000000000100000000 0000 00000 00 00 0000112234566899999999999999
Q ss_pred CcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccce
Q 001279 505 GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1108)
Q Consensus 505 GtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~ 584 (1108)
|.|++||+..+... ..+.+|...|++++|+|++++|++++.||.|++|++....
T Consensus 983 g~i~i~d~~~~~~~-----------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~--------------- 1036 (1249)
T 3sfz_A 983 GAIKIIELPNNRVF-----------SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD--------------- 1036 (1249)
T ss_dssp SCCEEEETTTTSCE-----------EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE---------------
T ss_pred CCEEEEEcCCCcee-----------eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc---------------
Confidence 99999999987754 3467899999999999999999999999999999998751
Q ss_pred eecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCcc
Q 001279 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHS 664 (1108)
Q Consensus 585 ~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~ 664 (1108)
...+..|...|++++|+|++ .+++|+.||+|++||+.+++.+. .+.+|...|.+++|+
T Consensus 1037 -----------~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~---~~~~~~~~v~~~~~s------- 1094 (1249)
T 3sfz_A 1037 -----------YVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIER---DFTCHQGTVLSCAIS------- 1094 (1249)
T ss_dssp -----------EECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCE---EEECCSSCCCCEEEC-------
T ss_pred -----------eEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeE---EEcccCCcEEEEEEC-------
Confidence 22346899999999999977 57889999999999999988773 445699999999999
Q ss_pred ccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCCccccccchhhhh
Q 001279 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIAEPVCGFPIEKQAEQSAEEN 744 (1108)
Q Consensus 665 ~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1108)
|++.+|++++.|++|.+||..++..+.....
T Consensus 1095 ---------------~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~---------------------------------- 1125 (1249)
T 3sfz_A 1095 ---------------SDATKFSSTSADKTAKIWSFDLLSPLHELKG---------------------------------- 1125 (1249)
T ss_dssp ---------------SSSSSCEEECCSSCCCEECSSSSSCSBCCCC----------------------------------
T ss_pred ---------------CCCCEEEEEcCCCcEEEEECCCcceeeeecc----------------------------------
Confidence 5578899999999999999988776543311
Q ss_pred ccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC-eeEEEecccccccccceeeee---------cCC
Q 001279 745 AAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQKV---------KHK 814 (1108)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~-~~~v~sl~~~~~g~~~~~~k~---------~~~ 814 (1108)
|...+....|.+. ..+++++++| .+++|.+.+. ..++.. .-.
T Consensus 1126 ---------------------h~~~v~~~~~s~d--g~~lat~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~ 1177 (1249)
T 3sfz_A 1126 ---------------------HNGCVRCSAFSLD--GILLATGDDNGEIRIWNVSDG-----QLLHSCAPISVEEGTATH 1177 (1249)
T ss_dssp ---------------------CSSCEEEEEECSS--SSEEEEEETTSCCCEEESSSS-----CCCCCCCCCC-------C
T ss_pred ---------------------CCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCCC-----ceEEEecccccccccccc
Confidence 1111112333333 5689999988 8999998762 111111 000
Q ss_pred CcceeeeeeecCCceeEEEEEeecCcEEEeecCCccccccccccceeeceecCccccccccC-CCcEEEEcC-ceeEEE
Q 001279 815 NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFV 891 (1108)
Q Consensus 815 ~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Gq~~l~~~-~e~~~~ 891 (1108)
...+.+..|. +++..|++. +|.|.+|++.+-+.+... ..+...+.+++|| ||+++++++ ++...+
T Consensus 1178 ~~~v~~l~fs--~dg~~l~s~--~g~v~vwd~~~g~~~~~~--------~~~~~~i~~~~~s~dg~~l~~~~~dg~v~v 1244 (1249)
T 3sfz_A 1178 GGWVTDVCFS--PDSKTLVSA--GGYLKWWNVATGDSSQTF--------YTNGTNLKKIHVSPDFRTYVTVDNLGILYI 1244 (1249)
T ss_dssp CSCCCEEEEC--TTSSCEEEE--SSSEEEBCSSSCBCCCCC--------CCSSCCCCCCEECSSSCCEEEECTTCCEEE
T ss_pred CceEEEEEEC--CCCCEEEEC--CCeEEEEECCCCceeeee--------eccCCcccEEEECCCCCEEEEecCCcEEEE
Confidence 1112222233 445666654 599999999987765543 2345668889999 999877777 665554
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-42 Score=429.29 Aligned_cols=535 Identities=12% Similarity=0.069 Sum_probs=364.3
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecC-CcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe--ee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LA 111 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~--~~ 111 (1108)
.+.+.+++|+|+|++||+++ ++.|+||+.. ......+.+|..+|++++|+|+|.+|++++.|++|+|||+.+++ +.
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 45677899999999999998 5799999996 45555778999999999999999999999999999999997643 23
Q ss_pred eee-cCCCCeeEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 112 CCL-KWESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 112 ~~~-~~~~~Itsl~~~~~~~~l~vg~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
..+ .|.+.|++++|+|++++|++++.+ +.|++|+ . +... ..+.+|. ..|.+++|+|
T Consensus 97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~--~~~~---~~l~gh~------------~~v~~v~f~p 157 (611)
T 1nr0_A 97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--T--GTSN---GNLTGQA------------RAMNSVDFKP 157 (611)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--T--CCBC---BCCCCCS------------SCEEEEEECS
T ss_pred EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--C--CCCc---ceecCCC------------CCceEEEECC
Confidence 333 688999999999999999988765 3555554 3 2222 1255665 7899999999
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE
Q 001279 187 NSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1108)
Q Consensus 187 ~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1108)
. ...+|++++.|++|++||..+++... +.+| ...|++++|. |+|++|
T Consensus 158 ~-~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H------------------------------~~~V~~v~fs-pdg~~l 205 (611)
T 1nr0_A 158 S-RPFRIISGSDDNTVAIFEGPPFKFKSTFGEH------------------------------TKFVHSVRYN-PDGSLF 205 (611)
T ss_dssp S-SSCEEEEEETTSCEEEEETTTBEEEEEECCC------------------------------SSCEEEEEEC-TTSSEE
T ss_pred C-CCeEEEEEeCCCeEEEEECCCCeEeeeeccc------------------------------cCceEEEEEC-CCCCEE
Confidence 4 22369999999999999998887654 4455 7789999975 999999
Q ss_pred EEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEE
Q 001279 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1108)
Q Consensus 266 ~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltv 345 (1108)
++|+.||+|++||..++......... ......+..++..+ ++++++.++++++.|+ .
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~--------~~~~~~h~~~V~~v--------~~spdg~~l~s~s~D~-------~ 262 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDD--------SLKNVAHSGSVFGL--------TWSPDGTKIASASADK-------T 262 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCT--------TSSSCSSSSCEEEE--------EECTTSSEEEEEETTS-------E
T ss_pred EEEECCCcEEEEECCCCcEeeeeccc--------cccccccCCCEEEE--------EECCCCCEEEEEeCCC-------e
Confidence 99999999999998765321100000 00000122234333 3556777888888776 6
Q ss_pred EeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCcc
Q 001279 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVE 425 (1108)
Q Consensus 346 l~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 425 (1108)
+++|.....+.+ ..+. .
T Consensus 263 v~lWd~~~~~~~-------------------------------------------~~~~-----------~--------- 279 (611)
T 1nr0_A 263 IKIWNVATLKVE-------------------------------------------KTIP-----------V--------- 279 (611)
T ss_dssp EEEEETTTTEEE-------------------------------------------EEEE-----------C---------
T ss_pred EEEEeCCCCcee-------------------------------------------eeec-----------C---------
Confidence 666654310000 0000 0
Q ss_pred CCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCC
Q 001279 426 FPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 505 (1108)
Q Consensus 426 ~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DG 505 (1108)
.. .+... ......+++.+++++.||
T Consensus 280 -------~~----------------------------------------------~~~~~--~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 280 -------GT----------------------------------------------RIEDQ--QLGIIWTKQALVSISANG 304 (611)
T ss_dssp -------CS----------------------------------------------SGGGC--EEEEEECSSCEEEEETTC
T ss_pred -------CC----------------------------------------------Cccce--eEEEEEcCCEEEEEeCCC
Confidence 00 00000 000111445799999999
Q ss_pred cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCcccee
Q 001279 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVH 585 (1108)
Q Consensus 506 tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~ 585 (1108)
+|++||...+.+. ..+.+|...|++++|+||+++|++++.||+|++|++....
T Consensus 305 ~i~~~~~~~~~~~-----------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~---------------- 357 (611)
T 1nr0_A 305 FINFVNPELGSID-----------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI---------------- 357 (611)
T ss_dssp CEEEEETTTTEEE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------
T ss_pred cEEEEeCCCCCcc-----------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc----------------
Confidence 9999998876643 3367899999999999999999999999999999997752
Q ss_pred ecccCCcceEEEEE-eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEe---ecCC----------------
Q 001279 586 ALPEGKISLCRAVF-SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT---DDIS---------------- 645 (1108)
Q Consensus 586 ~~~~~~g~~~~~~~-~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~---~~~~---------------- 645 (1108)
+...+ ..|...|++++|++++ .+++++.|++|++|++.+....... ..+.
T Consensus 358 ---------~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~ 427 (611)
T 1nr0_A 358 ---------SNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 427 (611)
T ss_dssp ---------EEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred ---------eeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence 12222 4688999999999776 6778889999999997654211000 0000
Q ss_pred ------------------CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecC
Q 001279 646 ------------------GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 707 (1108)
Q Consensus 646 ------------------~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~ 707 (1108)
.|...|.+++|+ |++.+|++|+.|++|++||..++.+...
T Consensus 428 ~~~~~~v~~~~~~~~~~~~~~~~v~~va~s----------------------pdg~~lasgs~D~~v~lwd~~~~~~~~~ 485 (611)
T 1nr0_A 428 AACYKHIAIYSHGKLTEVPISYNSSCVALS----------------------NDKQFVAVGGQDSKVHVYKLSGASVSEV 485 (611)
T ss_dssp EEESSEEEEEETTEEEEEECSSCEEEEEEC----------------------TTSCEEEEEETTSEEEEEEEETTEEEEE
T ss_pred EEeCceEEEEeCCceeeeecCCCceEEEEe----------------------CCCCEEEEeCCCCeEEEEEccCCceeee
Confidence 133445555555 7799999999999999999865432110
Q ss_pred CCCcccccceeeEEEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEE
Q 001279 708 SPWHLKKKVIAISMEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLC 787 (1108)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 787 (1108)
. .. .|...+..+.|.+. ..+++++
T Consensus 486 ~--------------~~----------------------------------------~h~~~v~~v~fspd--g~~las~ 509 (611)
T 1nr0_A 486 K--------------TI----------------------------------------VHPAEITSVAFSNN--GAFLVAT 509 (611)
T ss_dssp E--------------EE----------------------------------------ECSSCEEEEEECTT--SSEEEEE
T ss_pred e--------------cc----------------------------------------CCCCceEEEEECCC--CCEEEEE
Confidence 0 00 02223333556655 6799999
Q ss_pred ecC-eeEEEecccccccccceeee--ecCCCcceeeeeeecCCceeEEEEEeecCcEEEeecCCccccc-cccccceeec
Q 001279 788 CED-SVRLYSRKSVIQGNNKTVQK--VKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVM-ESSLMSILRW 863 (1108)
Q Consensus 788 ~e~-~~~v~sl~~~~~g~~~~~~k--~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~-~~~~~~~~~~ 863 (1108)
+.| .+++|.+... ...++. ......-+++..|. |++..|++...||+|+||++..-+... .. .
T Consensus 510 s~d~~v~~w~~~~~----~~~~~~~~~~~H~~~V~~v~fs--pdg~~lasgs~D~~v~lW~~~~~~~~~~~~-------~ 576 (611)
T 1nr0_A 510 DQSRKVIPYSVANN----FELAHTNSWTFHTAKVACVSWS--PDNVRLATGSLDNSVIVWNMNKPSDHPIII-------K 576 (611)
T ss_dssp ETTSCEEEEEGGGT----TEESCCCCCCCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTCTTSCCEEE-------T
T ss_pred cCCCCEEEEEcCCC----CceeeeeeeeecccceeEEEEC--CCCCEEEEEECCCcEEEEECCCcccccchh-------h
Confidence 988 9999998751 111111 11012223333333 457799999999999999997643111 11 1
Q ss_pred eec-CccccccccC-CCcEEEEcC-ceeEEE
Q 001279 864 NFK-ANMDKTISAD-NGQITLANG-SEVAFV 891 (1108)
Q Consensus 864 ~~~-~~~~~~~~~s-~Gq~~l~~~-~e~~~~ 891 (1108)
.-| .+.+.+++|+ ||+ +++++ ++.+++
T Consensus 577 ~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~l 606 (611)
T 1nr0_A 577 GAHAMSSVNSVIWLNETT-IVSAGQDSNIKF 606 (611)
T ss_dssp TSSTTSCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred ccCcccCeeEEEEcCCCE-EEEecCCCCEEE
Confidence 234 5678899999 999 66666 766655
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4e-40 Score=407.19 Aligned_cols=556 Identities=13% Similarity=0.100 Sum_probs=380.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc-----ceEEeCCCCCC-EEEEEEee--CCCEEEEEeCCCcEEEEE
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----EGLLISPSQLP-YKNLEFLQ--NQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-----~~~~~~~h~~~-V~~l~fs~--d~~~L~S~s~d~~I~vWd 104 (1108)
++.+.|++++|+|++++||+|+ ++.|+||+.+.. ....+.+|..+ |++++|+| ++.+|++++.|+.|+|||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 6788899999999999999999 899999999754 55677889999 99999999 999999999999999999
Q ss_pred cCCC--------eeeeee-cCCCCeeEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCC
Q 001279 105 LESR--------SLACCL-KWESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1108)
Q Consensus 105 ~~s~--------~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1108)
+.++ ..+..+ .+...|++++|+|+++++++++.+ +.|++|+ . +... ..+.+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~--~~~~---~~~~~~~------- 160 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--S--GNSL---GEVSGHS------- 160 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--T--CCEE---EECCSCS-------
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--C--CCcc---eeeecCC-------
Confidence 9754 455554 578899999999999999999987 6666665 2 2333 2355555
Q ss_pred CCCCCCCeEEEecccCCCCC-EEEEEECCCeEEEEEccCCeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCCCCC
Q 001279 172 PLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1108)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~-~ll~~~~dg~V~lWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1108)
..|.++.|+| ++. ++++++.|+.|++||+.+++..... +| .
T Consensus 161 -----~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~------------------------------~ 203 (615)
T 1pgu_A 161 -----QRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH------------------------------H 203 (615)
T ss_dssp -----SCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSS------------------------------S
T ss_pred -----ccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeeccc------------------------------C
Confidence 7899999998 454 7999999999999999998776543 34 4
Q ss_pred C---ceeEEEeecCC-CCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCC
Q 001279 250 K---EISALCWASSS-GSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNI 325 (1108)
Q Consensus 250 ~---~Vtsl~w~spd-g~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~ 325 (1108)
. .|++++|. |+ +++|++++.||.|++||+.+++. +..+.........++..+. +.
T Consensus 204 ~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~--------~~- 262 (615)
T 1pgu_A 204 KQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGKSGEF-----------LKYIEDDQEPVQGGIFALS--------WL- 262 (615)
T ss_dssp CTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETTTCCE-----------EEECCBTTBCCCSCEEEEE--------ES-
T ss_pred CCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCCCE-----------eEEecccccccCCceEEEE--------Ec-
Confidence 4 89999986 99 99999999999999999976532 1111000001233444442 34
Q ss_pred CceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecC---CCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEE
Q 001279 326 DGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT---LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHF 402 (1108)
Q Consensus 326 ~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~---~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~ 402 (1108)
++.++++++.++ .+.+|.....+.+ ..+... ....+..+.+. + ...+++.+.+|.+.+
T Consensus 263 ~~~~l~~~~~d~-------~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~--------~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 263 DSQKFATVGADA-------TIRVWDVTTSKCV---QKWTLDKQQLGNQQVGVVAT-G--------NGRIISLSLDGTLNF 323 (615)
T ss_dssp SSSEEEEEETTS-------EEEEEETTTTEEE---EEEECCTTCGGGCEEEEEEE-E--------TTEEEEEETTSCEEE
T ss_pred CCCEEEEEcCCC-------cEEEEECCCCcEE---EEEcCCCCcccCceeEEEeC-C--------CCeEEEEECCCCEEE
Confidence 678899998887 7777765432221 112221 11344444443 2 125777788899999
Q ss_pred EeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCc
Q 001279 403 YDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGV 482 (1108)
Q Consensus 403 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~ 482 (1108)
|+.......... .++
T Consensus 324 ~d~~~~~~~~~~-----------------------------------------------------------------~~~ 338 (615)
T 1pgu_A 324 YELGHDEVLKTI-----------------------------------------------------------------SGH 338 (615)
T ss_dssp EETTEEEEEEEE-----------------------------------------------------------------CCC
T ss_pred EECCCCcEEEEE-----------------------------------------------------------------eCC
Confidence 985432111100 112
Q ss_pred ccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEE
Q 001279 483 PSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYI 562 (1108)
Q Consensus 483 ~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~l 562 (1108)
...+..+++ |+ +++|+.||.|++||+. . +. .+|...|++++| +++.+|++++.||.|++
T Consensus 339 ~~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~-----------~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 339 NKGITALTV-NP---LISGSYDGRIMEWSSS----S-----------MH-QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp SSCEEEEET-TT---TEEEETTSCEEETTTT----E-----------EE-CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred CCCEEEEEe-cC---cEEECCCCeEEEEEch----h-----------hc-CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 223334456 55 8888889999999887 1 22 577888899988 66788888888999999
Q ss_pred EEecCCCCCcccc---cccc-------CccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 001279 563 YNLNGSLDAKNFL---FVLE-------TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE-CGRVAVLD 631 (1108)
Q Consensus 563 w~l~~~~~~~~~~---~~~~-------~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~-dG~V~vwd 631 (1108)
|++.......... +.+. ..+.+..+....+ .++..+ .|...|++++|+ +++|++|+. ||.|++||
T Consensus 398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~ 473 (615)
T 1pgu_A 398 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG-DIIKSV-RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFK 473 (615)
T ss_dssp TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTC-CEEEEE-ECSSCEEEEEEC--SSEEEEEETTTSCEEEEE
T ss_pred EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCC-ceeeec-ccCCCceEEEEc--CCEEEEeecCCCeEEEEE
Confidence 8876542110000 0000 1111111111111 123333 488999999999 889999999 99999999
Q ss_pred ccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCc
Q 001279 632 MNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWH 711 (1108)
Q Consensus 632 ~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~ 711 (1108)
+.++.... ..+.+|..+|.+++|+ |++.+|++++.|+.|++||..+++.+.....
T Consensus 474 ~~~~~~~~--~~~~~~~~~v~~~~~s----------------------~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~- 528 (615)
T 1pgu_A 474 LSDLEVSF--DLKTPLRAKPSYISIS----------------------PSETYIAAGDVMGKILLYDLQSREVKTSRWA- 528 (615)
T ss_dssp TTEEEEEE--ECSSCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTTEEEECCSC-
T ss_pred CCCccccc--cccCCccCceEEEEEC----------------------CCCCEEEEcCCCCeEEEeeCCCCcceeEeec-
Confidence 99987653 4667899999999999 5688999999999999999999888755311
Q ss_pred ccccceeeEEEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecC-
Q 001279 712 LKKKVIAISMEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED- 790 (1108)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~- 790 (1108)
.....+..+..- .... ..........+++++++|
T Consensus 529 -~h~~~v~~~~~s-p~~~-------------------------------------------~~~~~~~~~~~l~~~~~dg 563 (615)
T 1pgu_A 529 -FRTSKINAISWK-PAEK-------------------------------------------GANEEEIEEDLVATGSLDT 563 (615)
T ss_dssp -CCSSCEEEEEEC-CCC-------------------------------------------------CCSCCEEEEEETTS
T ss_pred -CCCCceeEEEEc-Cccc-------------------------------------------cccccccCCCEEEEEcCCC
Confidence 011222222211 0000 000000015689999988
Q ss_pred eeEEEecccccccccceeeeecCCCcceeeeeeecCCceeEEEEEeecCcEEEeecC
Q 001279 791 SVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLP 847 (1108)
Q Consensus 791 ~~~v~sl~~~~~g~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp 847 (1108)
.|++|.+... ...++...-.....++..|.. ++. |++...||.|+||++.
T Consensus 564 ~i~iw~~~~~----~~~~~~~~~h~~~v~~l~~s~--~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 564 NIFIYSVKRP----MKIIKALNAHKDGVNNLLWET--PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp CEEEEESSCT----TCCEEETTSSTTCEEEEEEEE--TTE-EEEEETTSCEEEEEEC
T ss_pred cEEEEECCCC----ceechhhhcCccceEEEEEcC--CCC-eEEecCCceEEEEeee
Confidence 9999999872 233443321122233333444 355 9999999999999875
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.4e-41 Score=449.66 Aligned_cols=558 Identities=11% Similarity=0.098 Sum_probs=394.8
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEee--CCCEEEEEeCCCcEEEEEcCC
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWd~~s 107 (1108)
..||...|.+++|+|++++||+|+.||.|+|||....+. ....+|..+|.+++|+| ++.++++++.|+.|++||+.+
T Consensus 653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 732 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence 358999999999999999999999999999999965544 46678999999999999 556899999999999999999
Q ss_pred Ceeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 108 ~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
++.+..+ .|...|++++|+|+++++++|+.||.|++|++... ..... +...... ......+......|.+++|+|
T Consensus 733 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~--~~~~~-~~~~~~~-~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA--NERKS-INVKRFF-LSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT--EEEEE-EECCCCC---------CCCCCBCCCCBCT
T ss_pred cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC--cccce-ecccccc-cccCCccccccceEEEEEECC
Confidence 9887766 68899999999999999999999999999998753 22211 1111100 000001111234789999988
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEe--CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 187 NSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 187 ~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
++..+++++ ++.+.+||+.++...... +| ...|++++|. |++..
T Consensus 809 --dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~------------------------------~~~v~~~~~s-p~~~~ 854 (1249)
T 3sfz_A 809 --DGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGH------------------------------HSTIQYCDFS-PYDHL 854 (1249)
T ss_dssp --TSSEEEEEE-TTEEEEEETTTCCEEEEEECSS------------------------------SSCCCEEEEC-SSTTE
T ss_pred --CCCEEEEEc-CCcEEEEEecCCCceeEEcCCC------------------------------CCceEEEEEc-CCCCE
Confidence 788666665 789999999998765443 34 6789999975 99999
Q ss_pred EEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEE
Q 001279 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~lt 344 (1108)
+++++.||.|++||+.++.. +..+. ....++..+ .+++++..+++++.++
T Consensus 855 l~~~~~dg~v~vwd~~~~~~-----------~~~~~----~h~~~v~~v--------~~spdg~~l~s~s~dg------- 904 (1249)
T 3sfz_A 855 AVIALSQYCVELWNIDSRLK-----------VADCR----GHLSWVHGV--------MFSPDGSSFLTASDDQ------- 904 (1249)
T ss_dssp EEEECSSSCEEEEETTTTEE-----------EEEEC----CCSSCEEEE--------EECTTSSEEEEEETTS-------
T ss_pred EEEEeCCCeEEEEEcCCCce-----------eeecC----CCccceEEE--------EECCCCCEEEEEeCCC-------
Confidence 99999999999999976521 11111 122234433 3566788899998887
Q ss_pred EEecccccccccc---ce------------------------------eeeeecCCCCccceEEEecCCCCCCCCCcceE
Q 001279 345 VLSLEWSSGMENL---RC------------------------------VSRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1108)
Q Consensus 345 vl~l~~~~~~~~~---~~------------------------------~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l 391 (1108)
.+.+|........ .. ...........+..+.+.|+. ..+
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g--------~~l 976 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL--------EYV 976 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS--------SEE
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC--------CEE
Confidence 6666653311000 00 000011112234444444432 134
Q ss_pred EEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCcc
Q 001279 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1108)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1108)
++.+.+|.+.+|+.......
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~------------------------------------------------------------ 996 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVF------------------------------------------------------------ 996 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCE------------------------------------------------------------
T ss_pred EEEcCCCCEEEEEcCCCcee------------------------------------------------------------
Confidence 45555666666553211000
Q ss_pred CcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeE
Q 001279 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL 551 (1108)
Q Consensus 472 ~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~L 551 (1108)
....+|...+..++++++++++++|+.||+|++||+.++.+. .+..|...|++++|++++ .+
T Consensus 997 -----~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~v~~~~~~~~~-~l 1058 (1249)
T 3sfz_A 997 -----SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV------------FLQAHQETVKDFRLLQDS-RL 1058 (1249)
T ss_dssp -----EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE------------CCBCCSSCEEEEEECSSS-EE
T ss_pred -----eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE------------EEecCCCcEEEEEEcCCC-cE
Confidence 011234445566689999999999999999999999987744 255788999999999965 57
Q ss_pred EEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001279 552 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1108)
Q Consensus 552 asg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd 631 (1108)
++++.||.|++|++.... +...+..|.+.|++++|+|++++|++|+.||+|++||
T Consensus 1059 ~~~~~dg~v~vwd~~~~~-------------------------~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1059 LSWSFDGTVKVWNVITGR-------------------------IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp EEEESSSEEEEEETTTTC-------------------------CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred EEEECCCcEEEEECCCCc-------------------------eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 789999999999998752 3466788999999999999999999999999999999
Q ss_pred ccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCCCCc
Q 001279 632 MNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWH 711 (1108)
Q Consensus 632 ~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~~~~ 711 (1108)
+.++..+ ..+.+|..+|.+++|+ |++.+|++++.||.|++||..+|+.+... .
T Consensus 1114 ~~~~~~~---~~l~~h~~~v~~~~~s----------------------~dg~~lat~~~dg~i~vwd~~~~~~~~~~--~ 1166 (1249)
T 3sfz_A 1114 FDLLSPL---HELKGHNGCVRCSAFS----------------------LDGILLATGDDNGEIRIWNVSDGQLLHSC--A 1166 (1249)
T ss_dssp SSSSSCS---BCCCCCSSCEEEEEEC----------------------SSSSEEEEEETTSCCCEEESSSSCCCCCC--C
T ss_pred CCCccee---eeeccCCCcEEEEEEC----------------------CCCCEEEEEeCCCEEEEEECCCCceEEEe--c
Confidence 9988766 5677899999999999 56889999999999999999998876543 1
Q ss_pred ccccceeeEEEEecCCCCCCCccccccchhhhhccCCCCCCCCCCcccCCcccccccccccccCCCCCCCcEEEEEecCe
Q 001279 712 LKKKVIAISMEVIAEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDS 791 (1108)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~e~~ 791 (1108)
+.... .....|...+....|.+. ..++++++ +.
T Consensus 1167 ~~~~~--------------------------------------------~~~~~~~~~v~~l~fs~d--g~~l~s~~-g~ 1199 (1249)
T 3sfz_A 1167 PISVE--------------------------------------------EGTATHGGWVTDVCFSPD--SKTLVSAG-GY 1199 (1249)
T ss_dssp CCC---------------------------------------------------CCSCCCEEEECTT--SSCEEEES-SS
T ss_pred ccccc--------------------------------------------ccccccCceEEEEEECCC--CCEEEECC-Ce
Confidence 10000 000012333444556654 66777665 89
Q ss_pred eEEEecccccccccceeeeecCCCcceeeeeeecCCceeEEEEEeecCcEEEeecCC
Q 001279 792 VRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPD 848 (1108)
Q Consensus 792 ~~v~sl~~~~~g~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~ 848 (1108)
+++|.+.+. ..++.......-.++..|. +++..|+++..+|.|.+|++++
T Consensus 1200 v~vwd~~~g-----~~~~~~~~~~~~i~~~~~s--~dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1200 LKWWNVATG-----DSSQTFYTNGTNLKKIHVS--PDFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp EEEBCSSSC-----BCCCCCCCSSCCCCCCEEC--SSSCCEEEECTTCCEEEECCCC
T ss_pred EEEEECCCC-----ceeeeeeccCCcccEEEEC--CCCCEEEEecCCcEEEEEeecC
Confidence 999998772 2232222111111222222 4567899999999999999874
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-39 Score=401.86 Aligned_cols=491 Identities=12% Similarity=0.089 Sum_probs=345.9
Q ss_pred eeeeCCCCC-ceEEEEcC--CCCEEEEEECCCcEEEEecCC---------cceEEeCCCCCCEEEEEEeeCCCEEEEEeC
Q 001279 29 AVHYGIPAT-ASILAFDH--IQRLLAIATLDGRIKVIGGDG---------IEGLLISPSQLPYKNLEFLQNQGFLISITN 96 (1108)
Q Consensus 29 ~~~~G~~~~-is~la~sp--~~~~LA~Gs~dG~I~iw~~~~---------~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~ 96 (1108)
....||... |++++|+| ++++||+|+.||.|+||+... ........|..+|.+++|+|++.+|++++.
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 136 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence 334589999 99999999 999999999999999999952 233356679999999999999999999998
Q ss_pred C----CcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccC
Q 001279 97 D----NEIQVWSLESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1108)
Q Consensus 97 d----~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~-~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1108)
+ +.|.+|| +++.+..+ .|...|++++|+|+++ ++++|+.||.|++|++.. +++. ..+.+|.
T Consensus 137 ~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--~~~~---~~~~~~~------ 203 (615)
T 1pgu_A 137 GRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--FKFS---ASDRTHH------ 203 (615)
T ss_dssp CSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--BEEE---EEECSSS------
T ss_pred CCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--ccee---eeecccC------
Confidence 7 5788888 45555444 6888999999999998 899999999999999653 3443 2355554
Q ss_pred CCCCCCC---CeEEEecccCCC-CCEEEEEECCCeEEEEEccCCeEEEEe-----CCCcccccccccCCCCCCCCCcccC
Q 001279 171 FPLLSHQ---PVVGVLPHPNSS-GNRVLIAYENALVILWDVSEAQIIFVG-----GGKDLQLKDGVVDSPSEGDSTFLEG 241 (1108)
Q Consensus 171 ~~~~~~~---~V~~v~f~P~~~-~~~ll~~~~dg~V~lWdl~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1108)
. .|.+++|+| + +.+|++++.||.|++||+.+++.+... +|
T Consensus 204 ------~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------------------- 252 (615)
T 1pgu_A 204 ------KQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV----------------------- 252 (615)
T ss_dssp ------CTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-----------------------
T ss_pred ------CCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc-----------------------
Confidence 5 799999998 6 888999999999999999998877655 44
Q ss_pred cCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeeccccc
Q 001279 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKES 321 (1108)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~ 321 (1108)
...|++++|. ++.+|++++.||.|++||+.++.. +..+..........+..+.
T Consensus 253 -------~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~------- 305 (615)
T 1pgu_A 253 -------QGGIFALSWL--DSQKFATVGADATIRVWDVTTSKC-----------VQKWTLDKQQLGNQQVGVV------- 305 (615)
T ss_dssp -------CSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEE-----------EEEEECCTTCGGGCEEEEE-------
T ss_pred -------CCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcE-----------EEEEcCCCCcccCceeEEE-------
Confidence 7789999975 899999999999999999986531 2222221111112333332
Q ss_pred ccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeec-CCCCccceEEEecCCCCCCCCCcceEEEEcCCCeE
Q 001279 322 RSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI-TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQL 400 (1108)
Q Consensus 322 ~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l-~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l 400 (1108)
.+ ++.++++++.++ .+.+|.....+.+ ..+ .....+..+.+ |+ ++..+.+|.+
T Consensus 306 -~~-~~~~l~~~~~~g-------~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~-~~-----------l~~~~~dg~i 359 (615)
T 1pgu_A 306 -AT-GNGRIISLSLDG-------TLNFYELGHDEVL-----KTISGHNKGITALTV-NP-----------LISGSYDGRI 359 (615)
T ss_dssp -EE-ETTEEEEEETTS-------CEEEEETTEEEEE-----EEECCCSSCEEEEET-TT-----------TEEEETTSCE
T ss_pred -eC-CCCeEEEEECCC-------CEEEEECCCCcEE-----EEEeCCCCCEEEEEe-cC-----------cEEECCCCeE
Confidence 22 566788887776 5666654321111 122 23346666666 43 5666778888
Q ss_pred EEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccC------CCCchhhhhHHHhhc---------ccc
Q 001279 401 HFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPF------GGHSSKGLSEIATFT---------KLH 465 (1108)
Q Consensus 401 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~------~~~~~~~~~~~~~~~---------~~~ 465 (1108)
.+|+...+. ..|...|+++.+ .... .......|.-..... ...
T Consensus 360 ~~w~~~~~~---------------------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~ 417 (615)
T 1pgu_A 360 MEWSSSSMH---------------------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANND 417 (615)
T ss_dssp EETTTTEEE---------------------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSS
T ss_pred EEEEchhhc---------------------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCC
Confidence 888865110 113333444433 1000 000011111000000 000
Q ss_pred CCC----CccCcccccccCC-------cccCCCccccCCCCcEEEEEec-CCcEEEEeCCCCceeeEeeeccccceeecc
Q 001279 466 SSH----TQAGHIKWPLSGG-------VPSPVPITKCHSVDRVYLAGYH-DGSVRIWDATYPVFKLICALDAEVQGIEVA 533 (1108)
Q Consensus 466 ~~~----~~~~~~~wp~~gg-------~~~~~~~~~~s~~~~llatgs~-DGtVriWd~~~~~l~~~~~l~~~~~~~~l~ 533 (1108)
+.. ....-..|....+ +...+..++++ ++++++|+. ||.|++||+..+.+.. ..+.
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----------~~~~ 485 (615)
T 1pgu_A 418 GFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----------DLKT 485 (615)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----------ECSS
T ss_pred CCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----------cccC
Confidence 000 0000011111011 12233344555 789999999 9999999998765421 1356
Q ss_pred CCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEee-cCcCEEEEEEc
Q 001279 534 GSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFT 612 (1108)
Q Consensus 534 ~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vtslafs 612 (1108)
+|...|++++|+|++++|++++.||.|+||++... .++..+.. |...|++++|+
T Consensus 486 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~~~h~~~v~~~~~s 540 (615)
T 1pgu_A 486 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-------------------------EVKTSRWAFRTSKINAISWK 540 (615)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------------EEEECCSCCCSSCEEEEEEC
T ss_pred CccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-------------------------cceeEeecCCCCceeEEEEc
Confidence 88999999999999999999999999999999775 23455566 99999999999
Q ss_pred C----------CCCEEEEEeCCCeEEEEEccCc-eEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCC
Q 001279 613 S----------SGAKLAVGFECGRVAVLDMNLL-SVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPA 681 (1108)
Q Consensus 613 p----------dg~~LavGs~dG~V~vwd~~~~-~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~ 681 (1108)
| ++++||+|+.||.|++||+.++ ..+ ..+.+|..+|.+++|+ |+
T Consensus 541 p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~h~~~v~~l~~s----------------------~~ 595 (615)
T 1pgu_A 541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII---KALNAHKDGVNNLLWE----------------------TP 595 (615)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCE---EETTSSTTCEEEEEEE----------------------ET
T ss_pred CccccccccccCCCEEEEEcCCCcEEEEECCCCceec---hhhhcCccceEEEEEc----------------------CC
Confidence 9 9999999999999999999987 555 3567899999999999 45
Q ss_pred ccEEEEEcCCccEEEEeCCC
Q 001279 682 EEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 682 ~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
+. |++++.|+.|++||.++
T Consensus 596 ~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 596 ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TE-EEEEETTSCEEEEEEC-
T ss_pred CC-eEEecCCceEEEEeeec
Confidence 77 99999999999999865
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-37 Score=392.81 Aligned_cols=569 Identities=11% Similarity=0.071 Sum_probs=328.6
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
..+++...|.+++|+| +++||+|+.|+.|+|||+...+.+....|...|++++|+|++.+|++++.|++|++||+++++
T Consensus 53 ~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 53 IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 3456788999999999 889999999999999999876666444578899999999999999999999999999999987
Q ss_pred eee-----------e-ecCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc-c-----C
Q 001279 110 LAC-----------C-LKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK-A-----G 170 (1108)
Q Consensus 110 ~~~-----------~-~~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~-~-----~ 170 (1108)
+.. . ..|.+.|++++|+|+ ..++++|+.||.| +|++.. ++..+. +..|..... . .
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~--~~~~~~---~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE--NEIKQS---FIYELPPFAPGGDFSEK 205 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT--TEEEEE---ECCCBCTTCCCSTTCCC
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC--CceEEE---EecccCCcCCCcccccc
Confidence 641 1 246789999999996 4799999999999 999864 343321 332210000 0 0
Q ss_pred CCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCC
Q 001279 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1108)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1108)
....+...|.+++|+| ++.+|++++.||.|++||+.+++.+........... + .......+ ...+..
T Consensus 206 ~~~~h~~~V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~-~-----~~~~~~~~-----~~~~~~ 272 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN-V-----PQPDYIRD-----SSTNAA 272 (902)
T ss_dssp TTSCBCCCEEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT-S-----CCTTCCCC-----CSSCCC
T ss_pred cccccCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccC-C-----CCCcCCCC-----CccccC
Confidence 0012236799999999 688999999999999999999887654221100000 0 00000000 001245
Q ss_pred ceeEEEee---cCCC-CEEEEEEcc-----CcEEEEecCCCCCCCCccCCCCCc---------eeeeecccccCCccEEE
Q 001279 251 EISALCWA---SSSG-SILAVGYID-----GDILLWNTSTTASTKGQQTGSRNN---------VVKLELSSAERRLPVIV 312 (1108)
Q Consensus 251 ~Vtsl~w~---spdg-~~l~sg~~D-----G~I~lWd~~~~~~~~~~~~~~~~~---------~~kl~~~~~~~~~~i~~ 312 (1108)
.|++++|. +|++ ..|++|+.| +.+.+|++..... ....+.+. ..++... .....+..
T Consensus 273 ~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~v~~ 347 (902)
T 2oaj_A 273 KISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR---YSITSYEGMKNYYANPKQMKIFPL--PTNVPIVN 347 (902)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC---GGGCCHHHHHHHHHSCSEEEEECC--SSSSCEEE
T ss_pred CeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC---ccccchhhhhhhhcCccceEEEec--CCCCceEE
Confidence 79999995 2443 567777666 3788998531100 00000000 0111100 01122333
Q ss_pred EEeeccccc--ccCCCceEEEEeCCCCCCcceEEEEecccc-ccccccce-eeeeecCC-CCccceEEEecCC-------
Q 001279 313 LHWSTNKES--RSNIDGRLFVYGGDEIGSEEVLTVLSLEWS-SGMENLRC-VSRVDITL-TGSFADMILLSSA------- 380 (1108)
Q Consensus 313 ~~~~~~~s~--~~~~~~~llv~gg~~~~~~~~ltvl~l~~~-~~~~~~~~-~~~~~l~~-~~~v~~~~~~p~~------- 380 (1108)
+.+....+. ....+...+++++.++ .+.+|.. .+...... .....+.. +..+..+.+.+..
T Consensus 348 ~~~~~~~sp~~~g~~d~~~l~~~s~dg-------~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~ 420 (902)
T 2oaj_A 348 ILPIPRQSPYFAGCHNPGLILLILGNG-------EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420 (902)
T ss_dssp EEECCSSCSHHHHTBSCSEEEEEETTS-------CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred EEECCCCCCCcCCCCCceeEEEEcCCC-------cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence 322110000 0112343455555444 3344432 11000000 00001111 1233333332200
Q ss_pred ------C--C-CC----------CCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEE
Q 001279 381 ------G--A-TV----------GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAE 441 (1108)
Q Consensus 381 ------~--~-~~----------~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~ 441 (1108)
. . .+ ..+...++....+|.+.+||..... +. .+.+-...
T Consensus 421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~-~~---------------------~~~~~~~~ 478 (902)
T 2oaj_A 421 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD-IQ---------------------DNASFEVN 478 (902)
T ss_dssp HHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT-TT---------------------TTBCEEEE
T ss_pred HhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc-cc---------------------CCceEEee
Confidence 0 0 00 1123346666788888888854320 00 00000000
Q ss_pred EEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceee--
Q 001279 442 FMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKL-- 519 (1108)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~-- 519 (1108)
+.+ .+..++...+..++++|++++||+|+.||+|+|||+.++....
T Consensus 479 -------------l~~-------------------~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 479 -------------LSR-------------------TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp -------------HHH-------------------HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred -------------chh-------------------hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 000 0112444556677999999999999999999999987653100
Q ss_pred ------E----e-------------ee--------ccc-cceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecC
Q 001279 520 ------I----C-------------AL--------DAE-VQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 520 ------~----~-------------~l--------~~~-~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
. + .+ +.. ..-..+.+|..+|++|+||||| +||+|+.||+|+||++..
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 0 0 00 000 0012467899999999999999 999999999999999765
Q ss_pred CCCCccccccccCccceeecccCCcceEEEEEe-ecCcCEEEEEEc-----CCC---CEEEEEeCCCeEEEEEc---cCc
Q 001279 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFS-LVNSPVRALQFT-----SSG---AKLAVGFECGRVAVLDM---NLL 635 (1108)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~h~~~Vtslafs-----pdg---~~LavGs~dG~V~vwd~---~~~ 635 (1108)
...- +. ..+ ..+. +|.+.|++|+|+ ||| ++|++|+.||+|++||+ .++
T Consensus 606 ~~~~-------------~~------~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g 665 (902)
T 2oaj_A 606 PAII-------------YM------ENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGG 665 (902)
T ss_dssp TEEE-------------EE------EEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGG
T ss_pred CeEE-------------EE------eeh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCC
Confidence 4100 00 000 1122 789999999999 885 89999999999999999 666
Q ss_pred eEEEE--eecCCCCCCceEEEE-eeecccCccccCCCCC-CCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 636 SVLFF--TDDISGSSSPIISMT-WTEFKNTHSLAKNPNH-SEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 636 ~~~~~--~~~~~~h~~~V~~l~-fs~~~~~~~~~~~p~~-~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
..+.. .+....|.++|.++. |+...-.. ....+.. ........+++.+|+++ |..|++|+..+++++...
T Consensus 666 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~ 739 (902)
T 2oaj_A 666 KFDVQLMDITNVTSKGPIHKIDAFSKETKSS-CLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKG 739 (902)
T ss_dssp CEEEEEEEEEECCSSCCCCEEEEEETTTCCB-CBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEE
T ss_pred cEEEEecCceecCCCCceEEEEeEecCCCCc-ccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeE
Confidence 54422 122223468888877 66211000 0000000 00000011334444444 778999999998877543
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.5e-35 Score=373.53 Aligned_cols=443 Identities=12% Similarity=0.102 Sum_probs=323.9
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCee
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~ 110 (1108)
.||+..|++++|+|++++||+|+.||.|+||+...... .....|..+|++++|+|++.+|++++.|+.|+|||+.+++.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 58899999999999999999999999999999865544 46668999999999999999999999999999999999988
Q ss_pred eeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 111 ~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
+..+ .|...|++++|+|+++++++|+.||.|++|+++... .+.. .+.+|. ..|.+++|+|. +
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~~---~~~~~~------------~~v~~~~~~p~-~ 152 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQ---TFEGHE------------HFVMCVAFNPK-D 152 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEEE---EEECCS------------SCEEEEEEETT-E
T ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEEE---EEcCCC------------CcEEEEEEEcC-C
Confidence 8777 588999999999999999999999999999987531 3322 244554 77999999984 4
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC--CCCEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS--SGSILA 266 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp--dg~~l~ 266 (1108)
+..|++++.||.|++||+.++.... ...+ ....|.+++|. | ++.+|+
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----------------------------~~~~v~~~~~~-~~~~~~~l~ 202 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTG-----------------------------QERGVNYVDYY-PLPDKPYMI 202 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECC-----------------------------CTTCCCEEEEC-CSTTCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecC-----------------------------CCCCEEEEEEE-ECCCCCEEE
Confidence 6679999999999999998765432 2222 14678999986 7 999999
Q ss_pred EEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEE
Q 001279 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1108)
Q Consensus 267 sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl 346 (1108)
+++.||.|++||+.++.. +..+.. ...++..+ ..++++.++++++.++ .+
T Consensus 203 ~~~~dg~i~~~d~~~~~~-----------~~~~~~----~~~~v~~~--------~~~~~~~~l~~~~~dg-------~v 252 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSC-----------VATLEG----HMSNVSFA--------VFHPTLPIIISGSEDG-------TL 252 (814)
T ss_dssp EECTTSEEEEEETTTTEE-----------EEEEEC----CSSCEEEE--------EECSSSSEEEEEETTS-------CE
T ss_pred EEeCCCEEEEEECCCCcE-----------EEEEcC----CCCCEEEE--------EEcCCCCEEEEEeCCC-------eE
Confidence 999999999999976521 111111 12234333 3556778999998887 67
Q ss_pred eccccccccccceeeeeecC-CCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCcc
Q 001279 347 SLEWSSGMENLRCVSRVDIT-LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVE 425 (1108)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~-~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 425 (1108)
.+|.....+.+ ..+. ....+..+.+.|+.. ..+++...++.+..|+....
T Consensus 253 ~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----------------- 303 (814)
T 3mkq_A 253 KIWNSSTYKVE-----KTLNVGLERSWCIATHPTGR-------KNYIASGFDNGFTVLSLGND----------------- 303 (814)
T ss_dssp EEEETTTCSEE-----EEECCSSSSEEEEEECTTCG-------GGEEEEEETTEEEEEECSCC-----------------
T ss_pred EEEECCCCcEE-----EEeecCCCcEEEEEEccCCC-------ceEEEEEeCCCEEEEEcCCC-----------------
Confidence 77765432222 1222 234778888887731 22344444555555542110
Q ss_pred CCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCC
Q 001279 426 FPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 505 (1108)
Q Consensus 426 ~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DG 505 (1108)
.....+++++.++++++.+.
T Consensus 304 ------------------------------------------------------------~~~~~~~~~g~~~~~~~~~~ 323 (814)
T 3mkq_A 304 ------------------------------------------------------------EPTLSLDPVGKLVWSGGKNA 323 (814)
T ss_dssp ------------------------------------------------------------SCCEEECSSSEEEEECCTTS
T ss_pred ------------------------------------------------------------CceeEECCCCCEEEECcccc
Confidence 01124566677777766554
Q ss_pred c---EE------EEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccc
Q 001279 506 S---VR------IWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1108)
Q Consensus 506 t---Vr------iWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1108)
. +. .|++..+... ......+..|...+++++|+|+|++|++++ +|.+.+|++....
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~------- 388 (814)
T 3mkq_A 324 AASDIFTAVIRGNEEVEQDEPL-------SLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR------- 388 (814)
T ss_dssp CTTCEEEEECCSCCCCCSSSCB-------CCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE-------
T ss_pred cceeeeeeecccccccccCccc-------eeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc-------
Confidence 3 11 2333332211 011123456777899999999999999998 8999999975431
Q ss_pred cccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEe
Q 001279 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTW 656 (1108)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~f 656 (1108)
..+.+.|++++|+|+++++|+|+.+|.|++|+ .+.+|...|.++.|
T Consensus 389 -----------------------~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~-----------~~~~~~~~v~~~~~ 434 (814)
T 3mkq_A 389 -----------------------NKAFGKCQDFVWGPDSNSYALIDETGQIKYYK-----------NFKEVTSWSVPMHS 434 (814)
T ss_dssp -----------------------EEEEEECSEEEECTTSSCEEEECTTCCEEEEE-----------TTEECTTCCCCCSS
T ss_pred -----------------------ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE-----------CCCCccceEEcCCc
Confidence 23456788999999999999999999999995 33457788888888
Q ss_pred eecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 657 TEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 657 s~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
++.... ...|++++.|++|++||.++|+++...
T Consensus 435 s~dg~~-------------------~~~l~~~~~d~~v~~~d~~~~~~~~~~ 467 (814)
T 3mkq_A 435 AIDRLF-------------------SGALLGVKSDGFVYFFDWDNGTLVRRI 467 (814)
T ss_dssp CCCEEE-------------------CSSSEEEEETTEEEEECTTTCCEEEEE
T ss_pred Ccccee-------------------cceEEEEecCCEEEEEECCcCcEEEEE
Confidence 843210 147899999999999999998877543
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-35 Score=343.13 Aligned_cols=306 Identities=15% Similarity=0.237 Sum_probs=250.1
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
....||.+.|++++|+|++.+||+|+.||.|+|||....+ ...+.+|..+|.+++|+|++.+|++++.|++|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 4456999999999999999999999999999999996554 446778999999999999999999999999999999999
Q ss_pred Ceeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 108 ~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
++.+..+ .|...|++++|+|+++++++|+.|++|++|++.. +.... .+.+|. ..|.++.|+|
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~--~~~~~---~~~~h~------------~~v~~~~~~~ 244 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVK---TFTGHR------------EWVRMVRPNQ 244 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEE---EEECCS------------SCEEEEEECT
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEE---EEeCCC------------ccEEEEEECC
Confidence 9887776 6888999999999999999999999999999864 34432 255665 7899999988
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE
Q 001279 187 NSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1108)
Q Consensus 187 ~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1108)
++.+|++++.|++|++||+.+++... +.+| ...|.+++|. |++.+.
T Consensus 245 --~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h------------------------------~~~v~~~~~~-~~~~~~ 291 (410)
T 1vyh_C 245 --DGTLIASCSNDQTVRVWVVATKECKAELREH------------------------------RHVVECISWA-PESSYS 291 (410)
T ss_dssp --TSSEEEEEETTSCEEEEETTTCCEEEEECCC------------------------------SSCEEEEEEC-CSCGGG
T ss_pred --CCCEEEEEcCCCeEEEEECCCCceeeEecCC------------------------------CceEEEEEEc-Cccccc
Confidence 78889999999999999999887654 3444 6678888875 654310
Q ss_pred EEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEE
Q 001279 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1108)
Q Consensus 266 ~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltv 345 (1108)
. +. .. .+...
T Consensus 292 ~------------~~------------------------------------------~~--------~~~~~-------- 301 (410)
T 1vyh_C 292 S------------IS------------------------------------------EA--------TGSET-------- 301 (410)
T ss_dssp G------------GG------------------------------------------GC--------CSCC---------
T ss_pred c------------hh------------------------------------------hh--------ccccc--------
Confidence 0 00 00 00000
Q ss_pred EeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCcc
Q 001279 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVE 425 (1108)
Q Consensus 346 l~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 425 (1108)
T Consensus 302 -------------------------------------------------------------------------------- 301 (410)
T 1vyh_C 302 -------------------------------------------------------------------------------- 301 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCC
Q 001279 426 FPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 505 (1108)
Q Consensus 426 ~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DG 505 (1108)
......+.++++|+.||
T Consensus 302 ---------------------------------------------------------------~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 302 ---------------------------------------------------------------KKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp ---------------------------------------------------------------------CCEEEEEETTS
T ss_pred ---------------------------------------------------------------cccCCCCCEEEEEeCCC
Confidence 00112234899999999
Q ss_pred cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCcccee
Q 001279 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVH 585 (1108)
Q Consensus 506 tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~ 585 (1108)
+|++||+.++.+. ..+.+|...|++++|+|++++|++|+.||.|+||++...
T Consensus 319 ~i~iwd~~~~~~~-----------~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~----------------- 370 (410)
T 1vyh_C 319 TIKMWDVSTGMCL-----------MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK----------------- 370 (410)
T ss_dssp EEEEEETTTTEEE-----------EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-----------------
T ss_pred eEEEEECCCCceE-----------EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------
Confidence 9999999988754 346789999999999999999999999999999998764
Q ss_pred ecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001279 586 ALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1108)
Q Consensus 586 ~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~ 633 (1108)
.++..+..|...|++++|+|++.+||+|+.||+|+|||++
T Consensus 371 --------~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 371 --------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp --------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred --------ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 2456778999999999999999999999999999999863
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=318.32 Aligned_cols=201 Identities=14% Similarity=0.234 Sum_probs=163.2
Q ss_pred eeeCCCCCceEEEEcCC----CCEEEEEECCCcEEEEecCCcce---EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 001279 30 VHYGIPATASILAFDHI----QRLLAIATLDGRIKVIGGDGIEG---LLISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~----~~~LA~Gs~dG~I~iw~~~~~~~---~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1108)
...||...|.+++|+|+ +.+||+|+.||.|+||+...... ....+|..+|.+++|++++.++++++.|++|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 34589999999999985 67999999999999999865443 246789999999999999999999999999999
Q ss_pred EEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001279 103 WSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 103 Wd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
||+.+++.+..+ .+...+.+++|+|++++|++|+.+|.|++|+++.. ... +.+..+. ..|.+
T Consensus 107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~--~~~---~~~~~~~------------~~v~~ 169 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG--KKE---YSLDTRG------------KFILS 169 (321)
T ss_dssp EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC--SEE---EEEECSS------------SCEEE
T ss_pred EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC--cee---EEecCCC------------ceEEE
Confidence 999999888776 56678999999999999999999999999998653 322 3344443 67999
Q ss_pred EecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
++|+| ++++|++++.||.|++||+.+++.+.. .+| ...|++++|. |
T Consensus 170 ~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h------------------------------~~~v~~l~~s-p 216 (321)
T 3ow8_A 170 IAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGH------------------------------AMPIRSLTFS-P 216 (321)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCCCEEEEC-T
T ss_pred EEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEccc------------------------------CCceeEEEEc-C
Confidence 99998 788899999999999999998876543 333 5567777764 7
Q ss_pred CCCEEEEEEccCcEEEEecC
Q 001279 261 SGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~ 280 (1108)
++.+|++|+.||.|++||+.
T Consensus 217 d~~~l~s~s~dg~i~iwd~~ 236 (321)
T 3ow8_A 217 DSQLLVTASDDGYIKIYDVQ 236 (321)
T ss_dssp TSCEEEEECTTSCEEEEETT
T ss_pred CCCEEEEEcCCCeEEEEECC
Confidence 77777777777777777653
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-33 Score=330.88 Aligned_cols=170 Identities=15% Similarity=0.251 Sum_probs=141.9
Q ss_pred EecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCc
Q 001279 62 IGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGL 140 (1108)
Q Consensus 62 w~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~ 140 (1108)
|.........+.+|..+|++++|+|++.+|++++.|++|+|||+.+++....+ .|...|++++|+|++++|++|+.||+
T Consensus 94 ~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 94 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 43333334466789999999999999999999999999999999999888777 58899999999999999999999999
Q ss_pred EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCC
Q 001279 141 MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGK 219 (1108)
Q Consensus 141 V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~ 219 (1108)
|+||++.. +.... .+.+|. ..|.+++|+| ++.+|++|+.|++|++||+.++..+. +.+|
T Consensus 174 i~iwd~~~--~~~~~---~~~~h~------------~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h- 233 (410)
T 1vyh_C 174 IKLWDFQG--FECIR---TMHGHD------------HNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGH- 233 (410)
T ss_dssp CCEEETTS--SCEEE---CCCCCS------------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECC-
T ss_pred EEEEeCCC--CceeE---EEcCCC------------CCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-
Confidence 99999864 33432 356665 7899999999 68889999999999999999887654 4455
Q ss_pred cccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
...|.+++|. |+|.+|++|+.||+|++||+.+
T Consensus 234 -----------------------------~~~v~~~~~~-~~g~~l~s~s~D~~v~vwd~~~ 265 (410)
T 1vyh_C 234 -----------------------------REWVRMVRPN-QDGTLIASCSNDQTVRVWVVAT 265 (410)
T ss_dssp -----------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTT
T ss_pred -----------------------------CccEEEEEEC-CCCCEEEEEcCCCeEEEEECCC
Confidence 6678888864 8888888888888899888754
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.8e-33 Score=316.78 Aligned_cols=292 Identities=12% Similarity=0.186 Sum_probs=234.8
Q ss_pred ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEE
Q 001279 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1108)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~ 146 (1108)
....+.+|.++|.+++|+|++.+|++++.|++|++||+.+++.+..+ .+...|.+++|+|+++++++|+.|+.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34467789999999999999999999999999999999999887776 57788999999999999999999999999998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccc
Q 001279 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKD 225 (1108)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~ 225 (1108)
....+.... ...+.+|. +.|.++.|+| ++ .+++++.|++|++||+.+++.+.. .+|
T Consensus 127 ~~~~~~~~~-~~~~~~h~------------~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h------- 183 (340)
T 1got_B 127 KTREGNVRV-SRELAGHT------------GYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGH------- 183 (340)
T ss_dssp TTCSBSCEE-EEEEECCS------------SCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCC-------
T ss_pred ccCCCccee-EEEecCCC------------ccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCC-------
Confidence 754332221 13355555 7899999987 45 499999999999999999877544 445
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccccc
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~ 305 (1108)
...|++++|. |++.+|++|+.||.|++||+.++.. .
T Consensus 184 -----------------------~~~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~-----------~--------- 219 (340)
T 1got_B 184 -----------------------TGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMC-----------R--------- 219 (340)
T ss_dssp -----------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSE-----------E---------
T ss_pred -----------------------CCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCee-----------E---------
Confidence 7789999986 9999999999999999999864310 0
Q ss_pred CCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCC
Q 001279 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1108)
Q Consensus 306 ~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~ 385 (1108)
..+ .+
T Consensus 220 -----~~~-------------------~~--------------------------------------------------- 224 (340)
T 1got_B 220 -----QTF-------------------TG--------------------------------------------------- 224 (340)
T ss_dssp -----EEE-------------------CC---------------------------------------------------
T ss_pred -----EEE-------------------cC---------------------------------------------------
Confidence 000 00
Q ss_pred CCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhcccc
Q 001279 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1108)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1108)
|..
T Consensus 225 -----------------------------------------------h~~------------------------------ 227 (340)
T 1got_B 225 -----------------------------------------------HES------------------------------ 227 (340)
T ss_dssp -----------------------------------------------CSS------------------------------
T ss_pred -----------------------------------------------CcC------------------------------
Confidence 000
Q ss_pred CCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEE
Q 001279 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1108)
Q Consensus 466 ~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1108)
.+..++++|++++|++|+.||+|++||+........+ ....+...|++++|+
T Consensus 228 -------------------~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~---------~~~~~~~~v~~~~~s 279 (340)
T 1got_B 228 -------------------DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY---------SHDNIICGITSVSFS 279 (340)
T ss_dssp -------------------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------CCTTCCSCEEEEEEC
T ss_pred -------------------CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE---------ccCCcccceEEEEEC
Confidence 0112256677889999999999999999876643211 122344589999999
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCC
Q 001279 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1108)
Q Consensus 546 ~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG 625 (1108)
|++++|++|+.||.|+||++... .++..+.+|.++|++++|+|++++||+|+.||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~-------------------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKA-------------------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC-------------------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCCEEEEECCCCeEEEEEcccC-------------------------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 99999999999999999998764 24567789999999999999999999999999
Q ss_pred eEEEEE
Q 001279 626 RVAVLD 631 (1108)
Q Consensus 626 ~V~vwd 631 (1108)
+|+|||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999997
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=314.00 Aligned_cols=203 Identities=20% Similarity=0.243 Sum_probs=170.4
Q ss_pred eeCCCC-CceEEEEcCCCCEEEEEECCCcEEEEecCCcce----EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001279 31 HYGIPA-TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG----LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 31 ~~G~~~-~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~----~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~ 105 (1108)
..||+. .+.+++|+|++++||+|+.||.|+||+...... .+..+|..+|.+++|+|++.+|++++.|++|++||+
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 347887 899999999999999999999999999976532 244689999999999999999999999999999999
Q ss_pred CCCe--eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 106 ESRS--LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 106 ~s~~--~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
.++. .+..+ .|...|++++|+|++++|++|+.|++|++|+++....... ...+.+|. ..|.++
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~~~h~------------~~v~~~ 156 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC--VSVLNSHT------------QDVKHV 156 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE--EEEECCCC------------SCEEEE
T ss_pred cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE--EEEecCcC------------CCeEEE
Confidence 8774 34444 6889999999999999999999999999999975432111 12345554 789999
Q ss_pred ecccCCCCCEEEEEECCCeEEEEEccCCeEE---EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeec
Q 001279 183 LPHPNSSGNRVLIAYENALVILWDVSEAQII---FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1108)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1108)
+|+| ++.+|++++.|+.|++||+.++... .+.+| ...|++++|.
T Consensus 157 ~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h------------------------------~~~v~~l~~s- 203 (345)
T 3fm0_A 157 VWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGH------------------------------ESTVWSLAFD- 203 (345)
T ss_dssp EECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSCEEEEEEC-
T ss_pred EECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC------------------------------CCceEEEEEC-
Confidence 9999 6778999999999999999987543 34455 7789999985
Q ss_pred CCCCEEEEEEccCcEEEEecC
Q 001279 260 SSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~ 280 (1108)
|+|++|++|+.||+|++|+..
T Consensus 204 p~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 204 PSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEeccc
Confidence 999999999999999999863
No 17
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-33 Score=327.97 Aligned_cols=359 Identities=13% Similarity=0.127 Sum_probs=258.7
Q ss_pred eeeeeCCCCCceEEEEcCCCC-EEEEEECCCcEEEEec----CCcc-------eEEeCC----------CCCCEEEEEEe
Q 001279 28 IAVHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGG----DGIE-------GLLISP----------SQLPYKNLEFL 85 (1108)
Q Consensus 28 ~~~~~G~~~~is~la~sp~~~-~LA~Gs~dG~I~iw~~----~~~~-------~~~~~~----------h~~~V~~l~fs 85 (1108)
....+.|...|.+++|+|+++ +||+|+.||.|+||++ ...+ ...... |..+|++++|+
T Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 344567778999999999999 9999999999999999 6555 222222 67799999999
Q ss_pred eCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccc
Q 001279 86 QNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA 164 (1108)
Q Consensus 86 ~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~ 164 (1108)
|++.+|++++.|+.|++|| .+++.+..+ .|...|++++|+|++++|++++.+|.|++|++.. +..... +..+.
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~---~~~~~ 191 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS--GTVMQH---FELKE 191 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT--TEEEEE---ECCC-
T ss_pred CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC--CcEEEE---eeccc
Confidence 9999999999999999999 455555555 6889999999999999999999999999999864 344322 33222
Q ss_pred cccc---cCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCccc
Q 001279 165 LSEK---AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1108)
Q Consensus 165 ~~~~---~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1108)
.... ..........+.++.|+| ++ .+++++.+|.|++||+.+++... +.+|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~---------------------- 246 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVD--DD-KFVIPGPKGAIFVYQITEKTPTGKLIGH---------------------- 246 (425)
T ss_dssp --------------CCCBSCCEEEE--TT-EEEEECGGGCEEEEETTCSSCSEEECCC----------------------
T ss_pred cCccceeeccccCCcceeeEEEEcC--CC-EEEEEcCCCeEEEEEcCCCceeeeeccC----------------------
Confidence 0000 000001112388899987 44 49999999999999999876543 3344
Q ss_pred CcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccc
Q 001279 241 GISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKE 320 (1108)
Q Consensus 241 ~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s 320 (1108)
...|++++|. |++.+|++++.||.|++||+.+.... . .+
T Consensus 247 --------~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~--------------~~------- 285 (425)
T 1r5m_A 247 --------HGPISVLEFN-DTNKLLLSASDDGTLRIWHGGNGNSQ-----------N--------------CF------- 285 (425)
T ss_dssp --------SSCEEEEEEE-TTTTEEEEEETTSCEEEECSSSBSCS-----------E--------------EE-------
T ss_pred --------CCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCccc-----------e--------------Ee-------
Confidence 7789999986 99999999999999999998643100 0 00
Q ss_pred cccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeE
Q 001279 321 SRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQL 400 (1108)
Q Consensus 321 ~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l 400 (1108)
.+
T Consensus 286 ------------~~------------------------------------------------------------------ 287 (425)
T 1r5m_A 286 ------------YG------------------------------------------------------------------ 287 (425)
T ss_dssp ------------CC------------------------------------------------------------------
T ss_pred ------------cC------------------------------------------------------------------
Confidence 00
Q ss_pred EEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccC
Q 001279 401 HFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSG 480 (1108)
Q Consensus 401 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g 480 (1108)
+...++
T Consensus 288 --------------------------------~~~~i~------------------------------------------ 293 (425)
T 1r5m_A 288 --------------------------------HSQSIV------------------------------------------ 293 (425)
T ss_dssp --------------------------------CSSCEE------------------------------------------
T ss_pred --------------------------------CCccEE------------------------------------------
Confidence 000011
Q ss_pred CcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceE
Q 001279 481 GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLV 560 (1108)
Q Consensus 481 g~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V 560 (1108)
.+++++++ ++++++.||.|++||+..+.+. ..+..|...|++++|+|++++|++++.||.|
T Consensus 294 -------~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 294 -------SASWVGDD-KVISCSMDGSVRLWSLKQNTLL-----------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp -------EEEEETTT-EEEEEETTSEEEEEETTTTEEE-----------EEEECTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred -------EEEECCCC-EEEEEeCCCcEEEEECCCCcEe-----------EecccCCccEEEEEEcCCCCEEEEEECCCeE
Confidence 11344556 8999999999999999887754 3356788899999999999999999999999
Q ss_pred EEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCc--CEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001279 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS--PVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1108)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~--~Vtslafspdg~~LavGs~dG~V~vwd~~~ 634 (1108)
+||++......... .......+ .......++..+..|.. .|++++|+|++++|++|+.||.|++||+.+
T Consensus 355 ~i~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 355 NVYDLKKLNSKSRS--LYGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEEECHHHHC-------------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred EEEECCCCccceee--eecccccc---cCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 99999764311000 00000000 00111235677888876 999999999999999999999999999864
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=309.90 Aligned_cols=285 Identities=16% Similarity=0.192 Sum_probs=232.8
Q ss_pred cCCCCeeEEEEecC----CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 115 KWESNITAFSVISG----SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~----~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
.|.+.|++++|+++ +.+|++|+.|++|+||+++.....+ .+.+.+|. ..|.++.|+| ++
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~---~~~l~gh~------------~~v~~~~~~~--~~ 92 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL---QWSLEGHQ------------LGVVSVDISH--TL 92 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE---EEEECCCS------------SCEEEEEECS--SS
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee---eeeeccCC------------CCEEEEEECC--CC
Confidence 68899999999875 5699999999999999998532222 24567776 7899999988 67
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 191 NRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 191 ~~ll~~~~dg~V~lWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
..+++++.|++|++||+.+++.+... .+ ...+.+++|. |+|++|++|+
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~------------------------------~~~~~~~~~s-pdg~~l~~g~ 141 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDAG------------------------------PVDAWTLAFS-PDSQYLATGT 141 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECC------------------------------TTCCCCEEEC-TTSSEEEEEC
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeCC------------------------------CccEEEEEEC-CCCCEEEEEc
Confidence 78999999999999999998775543 33 5568889975 9999999999
Q ss_pred ccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecc
Q 001279 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1108)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~ 349 (1108)
.||.|++|++.++.. .. .+ .+
T Consensus 142 ~dg~v~i~~~~~~~~-----------~~--------------~~-------------------~~--------------- 162 (321)
T 3ow8_A 142 HVGKVNIFGVESGKK-----------EY--------------SL-------------------DT--------------- 162 (321)
T ss_dssp TTSEEEEEETTTCSE-----------EE--------------EE-------------------EC---------------
T ss_pred CCCcEEEEEcCCCce-----------eE--------------Ee-------------------cC---------------
Confidence 999999999864410 00 00 00
Q ss_pred ccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCcc
Q 001279 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1108)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1108)
T Consensus 163 -------------------------------------------------------------------------------- 162 (321)
T 3ow8_A 163 -------------------------------------------------------------------------------- 162 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEE
Q 001279 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1108)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVri 509 (1108)
+.. .+..++++|++++|++|+.||+|++
T Consensus 163 ---~~~-------------------------------------------------~v~~~~~spdg~~lasg~~dg~i~i 190 (321)
T 3ow8_A 163 ---RGK-------------------------------------------------FILSIAYSPDGKYLASGAIDGIINI 190 (321)
T ss_dssp ---SSS-------------------------------------------------CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ---CCc-------------------------------------------------eEEEEEECCCCCEEEEEcCCCeEEE
Confidence 000 0011256778889999999999999
Q ss_pred EeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeeccc
Q 001279 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1108)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1108)
||+.++.+. ..+.+|..+|++++|+|++++|++|+.||.|+||++...
T Consensus 191 wd~~~~~~~-----------~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--------------------- 238 (321)
T 3ow8_A 191 FDIATGKLL-----------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--------------------- 238 (321)
T ss_dssp EETTTTEEE-----------EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---------------------
T ss_pred EECCCCcEE-----------EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---------------------
Confidence 999987754 346789999999999999999999999999999998764
Q ss_pred CCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCC
Q 001279 590 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNP 669 (1108)
Q Consensus 590 ~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p 669 (1108)
.+...+.+|...|++++|+|++++|++|+.||+|+|||+.+++.+. .+.+|...|.+++|+
T Consensus 239 ----~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~---~~~~h~~~v~~v~~s------------ 299 (321)
T 3ow8_A 239 ----NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH---TFFDHQDQVWGVKYN------------ 299 (321)
T ss_dssp ----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEC------------
T ss_pred ----ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE---EEcCCCCcEEEEEEC------------
Confidence 2456788999999999999999999999999999999999998874 456799999999999
Q ss_pred CCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 670 NHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 670 ~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
|++.+|++++.|++|++||.
T Consensus 300 ----------~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 300 ----------GNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----------TTSSEEEEEETTCCEEEEEC
T ss_pred ----------CCCCEEEEEeCCCeEEEEeC
Confidence 55888999999999999996
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-32 Score=307.18 Aligned_cols=289 Identities=17% Similarity=0.299 Sum_probs=231.7
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~ 149 (1108)
.+.+|..+|.+++|+|++.+|++++.|++|++||+.++..+..+ .+...|.+++|++++++|++|+.|+.|++|++..
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~- 86 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT- 86 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-
Confidence 45679999999999999999999999999999999999888777 5778999999999999999999999999999865
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC-eEE-EEeCCCcccccccc
Q 001279 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QII-FVGGGKDLQLKDGV 227 (1108)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~-~~~-~~~~~~~~~~~~~~ 227 (1108)
+... ..+.+|. ..|.+++|+| ++.+|++|+.||+|++||+.++ ... .+.+|
T Consensus 87 -~~~~---~~~~~h~------------~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h--------- 139 (304)
T 2ynn_A 87 -GEKV---VDFEAHP------------DYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGH--------- 139 (304)
T ss_dssp -CCEE---EEEECCS------------SCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCC---------
T ss_pred -CcEE---EEEeCCC------------CcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhccc---------
Confidence 3443 2366665 7899999999 6788999999999999999887 333 34455
Q ss_pred cCCCCCCCCCcccCcCCCCCCCCceeEEEeecC-CCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccC
Q 001279 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~ 306 (1108)
...|++++|. | ++..|++|+.||+|++||+..... ..
T Consensus 140 ---------------------~~~v~~v~~~-p~~~~~l~sgs~D~~v~iwd~~~~~~-----------~~--------- 177 (304)
T 2ynn_A 140 ---------------------EHFVMCVAFN-PKDPSTFASGCLDRTVKVWSLGQSTP-----------NF--------- 177 (304)
T ss_dssp ---------------------CSCEEEEEEC-TTCTTEEEEEETTSEEEEEETTCSSC-----------SE---------
T ss_pred ---------------------CCcEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCCCc-----------cc---------
Confidence 7789999986 7 689999999999999999864310 00
Q ss_pred CccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCC
Q 001279 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1108)
Q Consensus 307 ~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~ 386 (1108)
.+ ..+..
T Consensus 178 -----~~------------------~~~~~-------------------------------------------------- 184 (304)
T 2ynn_A 178 -----TL------------------TTGQE-------------------------------------------------- 184 (304)
T ss_dssp -----EE------------------ECCCT--------------------------------------------------
T ss_pred -----ee------------------ccCCc--------------------------------------------------
Confidence 00 00000
Q ss_pred CcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccC
Q 001279 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1108)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1108)
..+....+
T Consensus 185 ------------------------------------------------~~v~~~~~------------------------ 192 (304)
T 2ynn_A 185 ------------------------------------------------RGVNYVDY------------------------ 192 (304)
T ss_dssp ------------------------------------------------TCEEEEEE------------------------
T ss_pred ------------------------------------------------CcEEEEEE------------------------
Confidence 00000000
Q ss_pred CCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe
Q 001279 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1108)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~ 546 (1108)
...+++.++++|+.||+|+|||+.++.+. ..+.+|...|++++|+|
T Consensus 193 -----------------------~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-----------~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 193 -----------------------YPLPDKPYMITASDDLTIKIWDYQTKSCV-----------ATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp -----------------------CCSTTCCEEEEEETTSEEEEEETTTTEEE-----------EEEECCSSCEEEEEECS
T ss_pred -----------------------EEcCCCCEEEEEcCCCeEEEEeCCCCccc-----------eeeCCCCCCEEEEEECC
Confidence 11235558999999999999999988755 45779999999999999
Q ss_pred CCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCC--EEEEEeCC
Q 001279 547 INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA--KLAVGFEC 624 (1108)
Q Consensus 547 d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~--~LavGs~d 624 (1108)
++.+|++|+.||+|+||++.+. .+...+..|...|++++|+|++. ++|+|++|
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTY-------------------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTC-------------------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred CCCEEEEEcCCCeEEEEECCCC-------------------------ceeeeccCCCccEEEEEECCCCCceEEEEecCC
Confidence 9999999999999999998775 35677888999999999999874 68999988
Q ss_pred CeEEEEEccC
Q 001279 625 GRVAVLDMNL 634 (1108)
Q Consensus 625 G~V~vwd~~~ 634 (1108)
| +.+|++.+
T Consensus 294 g-~~~~~~~~ 302 (304)
T 2ynn_A 294 G-FTVLSLGN 302 (304)
T ss_dssp E-EEEEECC-
T ss_pred c-eEEEEecc
Confidence 8 67887754
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=322.87 Aligned_cols=355 Identities=17% Similarity=0.203 Sum_probs=259.9
Q ss_pred CcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCC-EEEEEeCCCcEEEEEc----CCCe------eeeeec---------
Q 001279 57 GRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSL----ESRS------LACCLK--------- 115 (1108)
Q Consensus 57 G~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~vWd~----~s~~------~~~~~~--------- 115 (1108)
..+.+|+.+... .+....|..+|++++|+|++. +|++++.|+.|++||+ .+++ ....+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 445677775443 345556779999999999999 9999999999999999 8887 344443
Q ss_pred --CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 116 --WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 116 --~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
|...|++++|+|++++|++|+.+|.|++|+. ++.... .+..|. ..|.+++|+| ++.+|
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~---~~~~~~---~~~~~~------------~~v~~~~~~~--~~~~l 164 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK---TGALLN---VLNFHR------------APIVSVKWNK--DGTHI 164 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEET---TSCEEE---EECCCC------------SCEEEEEECT--TSSEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC---CCCeee---eccCCC------------ccEEEEEECC--CCCEE
Confidence 3568999999999999999999999999982 244442 255555 7899999988 68889
Q ss_pred EEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCc
Q 001279 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~ 273 (1108)
++++.||.|++||+.+++.+........... .. ...........+.+++|. ++ ..+++++.||.
T Consensus 165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~ 228 (425)
T 1r5m_A 165 ISMDVENVTILWNVISGTVMQHFELKETGGS---------SI-----NAENHSGDGSLGVDVEWV-DD-DKFVIPGPKGA 228 (425)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCC-----------------------------CCCBSCCEEE-ET-TEEEEECGGGC
T ss_pred EEEecCCeEEEEECCCCcEEEEeeccccCcc---------ce-----eeccccCCcceeeEEEEc-CC-CEEEEEcCCCe
Confidence 9999999999999999887655432000000 00 000000012338889986 66 46899999999
Q ss_pred EEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccccc
Q 001279 274 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1108)
Q Consensus 274 I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~ 353 (1108)
|++||+.+.... . .+ .+
T Consensus 229 i~~~d~~~~~~~-----------~--------------~~-------------------~~------------------- 245 (425)
T 1r5m_A 229 IFVYQITEKTPT-----------G--------------KL-------------------IG------------------- 245 (425)
T ss_dssp EEEEETTCSSCS-----------E--------------EE-------------------CC-------------------
T ss_pred EEEEEcCCCcee-----------e--------------ee-------------------cc-------------------
Confidence 999998643100 0 00 00
Q ss_pred ccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCC
Q 001279 354 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 433 (1108)
Q Consensus 354 ~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1108)
+
T Consensus 246 -------------------------------------------------------------------------------~ 246 (425)
T 1r5m_A 246 -------------------------------------------------------------------------------H 246 (425)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCC
Q 001279 434 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 513 (1108)
Q Consensus 434 ~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~ 513 (1108)
...++ .+++++++++|++|+.||.|++||+.
T Consensus 247 ~~~i~-------------------------------------------------~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 247 HGPIS-------------------------------------------------VLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp SSCEE-------------------------------------------------EEEEETTTTEEEEEETTSCEEEECSS
T ss_pred CCceE-------------------------------------------------EEEECCCCCEEEEEcCCCEEEEEECC
Confidence 00011 11345666799999999999999998
Q ss_pred CCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcc
Q 001279 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1108)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 593 (1108)
.+.+. ..+.+|...|++++|+|++ +|++++.||.|++|++...
T Consensus 278 ~~~~~-----------~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------------------------- 320 (425)
T 1r5m_A 278 NGNSQ-----------NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------------------------- 320 (425)
T ss_dssp SBSCS-----------EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-------------------------
T ss_pred CCccc-----------eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-------------------------
Confidence 77644 3456788999999999999 9999999999999999765
Q ss_pred eEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCce--------------------EEEEeecCCCCCC--ce
Q 001279 594 LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS--------------------VLFFTDDISGSSS--PI 651 (1108)
Q Consensus 594 ~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~--------------------~~~~~~~~~~h~~--~V 651 (1108)
.++..+..|...|++++|+|++++|++|+.||.|++||+.++. .+ ..+.+|.. +|
T Consensus 321 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v 397 (425)
T 1r5m_A 321 TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLY---ASYQSSQDNDYI 397 (425)
T ss_dssp EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEE---EEECCTTCCCCE
T ss_pred cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhh---hhhcCcccCCce
Confidence 3556777899999999999999999999999999999998877 55 34566866 99
Q ss_pred EEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
.++.|+ |++.+|++++.||.|++||.+
T Consensus 398 ~~~~~s----------------------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLSWN----------------------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEC----------------------TTSSEEEEEESSSCCEEEECC
T ss_pred EEEEcc----------------------CCCceEEEEecCceEEEEeec
Confidence 999999 568899999999999999974
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-33 Score=326.06 Aligned_cols=311 Identities=14% Similarity=0.199 Sum_probs=238.2
Q ss_pred EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
..+.+|.++|.+++|+|++.+|+|++.|++|+|||+.+++....+ .|...|++++|+|+++++++|+.|+.|+||++..
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 467889999999999999999999999999999999999887776 5778899999999999999999999999999864
Q ss_pred CCCeee--eeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCccccccc
Q 001279 149 DEGKLF--QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDG 226 (1108)
Q Consensus 149 ~~~~l~--~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~ 226 (1108)
....-. .....+.+|. +.|.++.|+|. .+.+|++|+.|++|++||+.+++.+..++...
T Consensus 140 ~~~~~~~~~~~~~~~gh~------------~~v~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~------ 200 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHK------------GYASSCQYVPD-QETRLITGSGDQTCVLWDVTTGQRISIFGSEF------ 200 (380)
T ss_dssp CSSCCCSSTTCCBCCCCS------------SCCCCCBCCSS-SSSCEEEECTTSCEEEECTTTCCEEEEECCCS------
T ss_pred CccccCCccceeeccCCC------------cceEEEEEecC-CCCEEEEECCCCcEEEEEcCCCcEEEEeeccc------
Confidence 211100 0011234444 78999999986 34559999999999999999998766553200
Q ss_pred ccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccC
Q 001279 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1108)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~ 306 (1108)
...+...|.+++|.++++.+|++|+.||+|++||+......
T Consensus 201 ------------------~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~--------------------- 241 (380)
T 3iz6_a 201 ------------------PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA--------------------- 241 (380)
T ss_dssp ------------------SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC---------------------
T ss_pred ------------------CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc---------------------
Confidence 00126789999987669999999999999999998532000
Q ss_pred CccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCC
Q 001279 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1108)
Q Consensus 307 ~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~ 386 (1108)
+..+
T Consensus 242 ---~~~~------------------------------------------------------------------------- 245 (380)
T 3iz6_a 242 ---VRTY------------------------------------------------------------------------- 245 (380)
T ss_dssp ---CEEE-------------------------------------------------------------------------
T ss_pred ---eEEE-------------------------------------------------------------------------
Confidence 0000
Q ss_pred CcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccC
Q 001279 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1108)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1108)
T Consensus 246 -------------------------------------------------------------------------------- 245 (380)
T 3iz6_a 246 -------------------------------------------------------------------------------- 245 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe
Q 001279 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1108)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~ 546 (1108)
.+|...+..++++|++++|+||+.||+|+|||+.++.....+..... ....+...|++++|+|
T Consensus 246 -------------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 246 -------------HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD----RNDNELPIVTSVAFSI 308 (380)
T ss_dssp -------------CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS----SSCCSSCSCSEEEECS
T ss_pred -------------CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc----ccccccCceEEEEECC
Confidence 00111122336778888999999999999999998875533322211 1123344699999999
Q ss_pred CCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEE----eecCcCEEEEEEcCCCCEEEEEe
Q 001279 547 INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF----SLVNSPVRALQFTSSGAKLAVGF 622 (1108)
Q Consensus 547 d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~h~~~Vtslafspdg~~LavGs 622 (1108)
++++|++|+.||.|+||++.... ++..+ ..|.+.|++++|+|++++||+|+
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~-------------------------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAE-------------------------MVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCC-------------------------EEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred CCCEEEEEECCCCEEEEECCCCc-------------------------eEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 99999999999999999986642 22233 57999999999999999999999
Q ss_pred CCCeEEEEEccCce
Q 001279 623 ECGRVAVLDMNLLS 636 (1108)
Q Consensus 623 ~dG~V~vwd~~~~~ 636 (1108)
.||+|+||++.+.+
T Consensus 364 ~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 364 WDKNLKIWAFSGHR 377 (380)
T ss_dssp TTSCEEEEECCSSS
T ss_pred CCCCEEEEecCCCc
Confidence 99999999998753
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.6e-33 Score=317.14 Aligned_cols=319 Identities=14% Similarity=0.153 Sum_probs=216.7
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC------CCcEEEEEcCCCeee--
Q 001279 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN------DNEIQVWSLESRSLA-- 111 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~------d~~I~vWd~~s~~~~-- 111 (1108)
.+.+.++..++.. ..+.....|+++... ...|+..|.+++|+|||.+|++++. |+.|++|+..++...
T Consensus 10 g~d~g~~~~~~~~-~g~~~~~~w~~p~~~---p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 10 GVDLGTENLYFQS-NGSSKGSAWGRPVTA---PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCCccceEEec-CCCccccccCCCCCC---cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 3555666666544 446778999886432 3469999999999999999999998 678999998776532
Q ss_pred ---eeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 112 ---CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 112 ---~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
....|...|++++|+|++.+ ++++.||+|+||++...+..... .+...+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~-~~~~~~h~------------~~V~~v~~sp-- 149 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVN-KFAKYEHD------------DIVKTLSVFS-- 149 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCC-CEEECCCS------------SCEEEEEECS--
T ss_pred EecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEE-eeccCCCC------------CCEEEEEECC--
Confidence 33468889999999999764 56778999999998754322221 13334454 7899999998
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILA 266 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~ 266 (1108)
++++|++++.||.|++||+.+++.+.. .+| ...|++++|. +++. .++
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h------------------------------~~~v~~v~~s-~~~~~~~~ 198 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH------------------------------SSEVNCVAAC-PGKDTIFL 198 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEEC-TTCSSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEc-cCCCceee
Confidence 788899999999999999999987654 445 7789999985 7774 789
Q ss_pred EEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEE
Q 001279 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1108)
Q Consensus 267 sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl 346 (1108)
+++.||.|++||+.+++.... +.. . .
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~-----------~~~----------------------~---------~------------ 224 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATR-----------IDF----------------------C---------A------------ 224 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCB-----------CCC----------------------T---------T------------
T ss_pred eeccCCceEEEECCCCceeee-----------eee----------------------c---------c------------
Confidence 999999999999875421100 000 0 0
Q ss_pred eccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccC
Q 001279 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1108)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1108)
T Consensus 225 -------------------------------------------------------------------------------- 224 (357)
T 4g56_B 225 -------------------------------------------------------------------------------- 224 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCC-CcEEEEEecCC
Q 001279 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV-DRVYLAGYHDG 505 (1108)
Q Consensus 427 ~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~-~~llatgs~DG 505 (1108)
+...++ .++++|+ +.+|++|+.|+
T Consensus 225 ------~~~~v~-------------------------------------------------~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 225 ------SDTIPT-------------------------------------------------SVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp ------CCSCEE-------------------------------------------------EEEECTTSTTEEEEEESSS
T ss_pred ------cccccc-------------------------------------------------chhhhhcccceEEEeeccc
Confidence 000000 1123333 34899999999
Q ss_pred cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC-CeEEEEecCceEEEEEecCCCCCccccccccCccce
Q 001279 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1108)
Q Consensus 506 tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~-~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~ 584 (1108)
.|++||+..+.+. ..+.+|...|++|+|+|++ ++|++|+.||+|+||++...
T Consensus 250 ~i~~wd~~~~~~~-----------~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------- 302 (357)
T 4g56_B 250 NVSLVNIKNPDSA-----------QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------- 302 (357)
T ss_dssp CEEEEESSCGGGC-----------EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC----------------
T ss_pred ceeEEECCCCcEe-----------EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC----------------
Confidence 9999999887754 3467899999999999987 58999999999999998765
Q ss_pred eecccCCcceEEEEEeecCcCEEEEEEcC-CCCEEEEEeCCCeEEEEEccCc
Q 001279 585 HALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 585 ~~~~~~~g~~~~~~~~~h~~~Vtslafsp-dg~~LavGs~dG~V~vwd~~~~ 635 (1108)
+++ ...+|.+.|++|+|+| ++++||+|+.||+|++||+...
T Consensus 303 ---------~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 303 ---------EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ---------EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred ---------cEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 123 3457999999999998 7899999999999999999654
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.7e-32 Score=307.99 Aligned_cols=200 Identities=17% Similarity=0.229 Sum_probs=171.2
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
..||...|.+++|+|++++||+|+.||.|+|||..... ......|...|.+++|+|++.+|++++.|+.|++||+.++.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 45999999999999999999999999999999986544 44667799999999999999999999999999999998763
Q ss_pred ----eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 110 ----LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 110 ----~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
....+ .|.+.|+++.|++++. +++|+.||.|++|++.. +... ..+.+|. ..|.+++|
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~--~~~~---~~~~~h~------------~~v~~~~~ 192 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET--GQQT---TTFTGHT------------GDVMSLSL 192 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT--TEEE---EEECCCS------------SCEEEEEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC--CcEE---EEEcCCC------------CceEEEEE
Confidence 23333 6888999999998775 88999999999999764 4444 2366665 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1108)
+| ++.+|++|+.||.|++||+.+++... +.+| ...|++++|. |+|.
T Consensus 193 ~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h------------------------------~~~v~~v~~~-p~~~ 239 (340)
T 1got_B 193 AP--DTRLFVSGACDASAKLWDVREGMCRQTFTGH------------------------------ESDINAICFF-PNGN 239 (340)
T ss_dssp CT--TSSEEEEEETTSCEEEEETTTCSEEEEECCC------------------------------SSCEEEEEEC-TTSS
T ss_pred CC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------------------------------cCCEEEEEEc-CCCC
Confidence 98 68889999999999999999987654 4445 7789999986 9999
Q ss_pred EEEEEEccCcEEEEecCC
Q 001279 264 ILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~ 281 (1108)
+|++|+.||+|++||+.+
T Consensus 240 ~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 240 AFATGSDDATCRLFDLRA 257 (340)
T ss_dssp EEEEEETTSCEEEEETTT
T ss_pred EEEEEcCCCcEEEEECCC
Confidence 999999999999999864
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=313.04 Aligned_cols=301 Identities=13% Similarity=0.119 Sum_probs=220.1
Q ss_pred EEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC------------eeeeeecCCCCeeEEEEec
Q 001279 60 KVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR------------SLACCLKWESNITAFSVIS 127 (1108)
Q Consensus 60 ~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~------------~~~~~~~~~~~Itsl~~~~ 127 (1108)
+.|++.... ...|...|.+++|+|||.+|++++ |+++++||.... .......+...|++++|++
T Consensus 17 r~w~~~~~~---~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 17 REWNLPPNA---PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp ------CCS---CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred cccCCCCCC---cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 566664322 234677899999999999988887 778888874211 1223345667899999999
Q ss_pred CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEc
Q 001279 128 GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 207 (1108)
Q Consensus 128 ~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl 207 (1108)
++ ++++|+.||+|+||+++..+.... ..+...+|. +.|.+|+|+| ++++|++|+.||+|++||+
T Consensus 93 d~-~l~~~s~dg~v~lWd~~~~~~~~~-~~~~~~~H~------------~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 93 ER-GILVASDSGAVELWELDENETLIV-SKFCKYEHD------------DIVSTVSVLS--SGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp TT-EEEEEETTSEEEEEEECTTSSCEE-EEEEEECCS------------SCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred CC-eEEEEECCCEEEEEeccCCCceeE-eeccccCCC------------CCEEEEEECC--CCCEEEEEeCCCeEEEEEC
Confidence 85 688999999999999986432222 123344565 8899999998 7889999999999999999
Q ss_pred cCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC-CEEEEEEccCcEEEEecCCCCCC
Q 001279 208 SEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTTAST 285 (1108)
Q Consensus 208 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~DG~I~lWd~~~~~~~ 285 (1108)
.+++.+. +.+| ...|++++|. +++ ..|++++.||+|++||+.+++.
T Consensus 157 ~~~~~~~~~~~h------------------------------~~~V~~~~~~-~~~~~~l~s~s~D~~v~iwd~~~~~~- 204 (344)
T 4gqb_B 157 AQQVVLSSYRAH------------------------------AAQVTCVAAS-PHKDSVFLSCSEDNRILLWDTRCPKP- 204 (344)
T ss_dssp TTTEEEEEECCC------------------------------SSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTSSSC-
T ss_pred CCCcEEEEEcCc------------------------------CCceEEEEec-CCCCCceeeeccccccccccccccce-
Confidence 9998765 4456 7889999986 777 5789999999999999875421
Q ss_pred CCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeec
Q 001279 286 KGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI 365 (1108)
Q Consensus 286 ~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l 365 (1108)
...+.. . .
T Consensus 205 ----------~~~~~~----------------------~---------~------------------------------- 212 (344)
T 4gqb_B 205 ----------ASQIGC----------------------S---------A------------------------------- 212 (344)
T ss_dssp ----------EEECC-----------------------------------------------------------------
T ss_pred ----------eeeeec----------------------c---------e-------------------------------
Confidence 000000 0 0
Q ss_pred CCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEec
Q 001279 366 TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLL 445 (1108)
Q Consensus 366 ~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~ 445 (1108)
+...+++
T Consensus 213 -------------------------------------------------------------------~~~~~~~------ 219 (344)
T 4gqb_B 213 -------------------------------------------------------------------PGYLPTS------ 219 (344)
T ss_dssp --------------------------------------------------------------------CCCEEE------
T ss_pred -------------------------------------------------------------------eecccee------
Confidence 0000000
Q ss_pred cCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCC-CCcEEEEEecCCcEEEEeCCCCceeeEeeec
Q 001279 446 PFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHS-VDRVYLAGYHDGSVRIWDATYPVFKLICALD 524 (1108)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~-~~~llatgs~DGtVriWd~~~~~l~~~~~l~ 524 (1108)
+++++ +++++++|+.||+|+|||+.++.+.
T Consensus 220 -------------------------------------------~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~------ 250 (344)
T 4gqb_B 220 -------------------------------------------LAWHPQQSEVFVFGDENGTVSLVDTKSTSCV------ 250 (344)
T ss_dssp -------------------------------------------EEECSSCTTEEEEEETTSEEEEEESCC--CC------
T ss_pred -------------------------------------------eeecCCCCcceEEeccCCcEEEEECCCCcEE------
Confidence 02222 3458999999999999999887754
Q ss_pred cccceeeccCCCCCeEEEEEEeCC-CeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecC
Q 001279 525 AEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN 603 (1108)
Q Consensus 525 ~~~~~~~l~~h~~~Vt~lafs~d~-~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~ 603 (1108)
..+.+|...|++|+|+|++ ++|++|+.||+|+|||+... .+..+.+|.
T Consensus 251 -----~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~--------------------------~~~~~~~H~ 299 (344)
T 4gqb_B 251 -----LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS--------------------------ELFRSQAHR 299 (344)
T ss_dssp -----EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC--------------------------EEEEECCCS
T ss_pred -----EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--------------------------cEEEEcCCC
Confidence 3467899999999999998 58999999999999998764 134567899
Q ss_pred cCEEEEEEcCCCC-EEEEEeCCCeEEEEEccCceE
Q 001279 604 SPVRALQFTSSGA-KLAVGFECGRVAVLDMNLLSV 637 (1108)
Q Consensus 604 ~~Vtslafspdg~-~LavGs~dG~V~vwd~~~~~~ 637 (1108)
+.|++|+|+|+++ +|++|+.||+|++|++.+..+
T Consensus 300 ~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 300 DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9999999999985 678999999999999987644
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-32 Score=310.08 Aligned_cols=320 Identities=11% Similarity=0.121 Sum_probs=257.1
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCc-ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~ 113 (1108)
...|.+++|+|+++++|++..++.+.+|..... ..+...+|..+|++++|+|++.+|++++ |+.|++||+.++.....
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 456899999999999999998888877766543 3445568999999999999999999998 99999999987753222
Q ss_pred e------cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC
Q 001279 114 L------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1108)
Q Consensus 114 ~------~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1108)
+ .+...|++++|+|+++++++|+.+|.|++|+++....... ..+..|. ..|.+++|+|
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~------------~~i~~~~~~~- 151 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK---AELTSSA------------PACYALAISP- 151 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE---EEEECSS------------SCEEEEEECT-
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee---eecccCC------------CceEEEEECC-
Confidence 1 5778999999999999999999999999999876432232 2344444 7799999988
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE
Q 001279 188 SSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1108)
Q Consensus 188 ~~~~~ll~~~~dg~V~lWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1108)
++.+|++++.||.|++||+.+++..... +| ...|++++|. |++..|+
T Consensus 152 -~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------------------------------~~~i~~~~~~-~~~~~l~ 199 (337)
T 1gxr_A 152 -DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH------------------------------TDGASCIDIS-NDGTKLW 199 (337)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEEC-TTSSEEE
T ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeeeeecc------------------------------cCceEEEEEC-CCCCEEE
Confidence 6888999999999999999998776543 34 6789999986 9999999
Q ss_pred EEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEE
Q 001279 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1108)
Q Consensus 267 sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl 346 (1108)
+++.||.|++||+.++.. + ...
T Consensus 200 ~~~~dg~i~~~d~~~~~~-----------~--------------~~~--------------------------------- 221 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGRQ-----------L--------------QQH--------------------------------- 221 (337)
T ss_dssp EEETTSEEEEEETTTTEE-----------E--------------EEE---------------------------------
T ss_pred EEecCCcEEEEECCCCce-----------E--------------eee---------------------------------
Confidence 999999999999864310 0 000
Q ss_pred eccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccC
Q 001279 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1108)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1108)
. .. +.
T Consensus 222 ~-------------------~~-----------------------------~~--------------------------- 226 (337)
T 1gxr_A 222 D-------------------FT-----------------------------SQ--------------------------- 226 (337)
T ss_dssp E-------------------CS-----------------------------SC---------------------------
T ss_pred c-------------------CC-----------------------------Cc---------------------------
Confidence 0 00 00
Q ss_pred CccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCc
Q 001279 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS 506 (1108)
Q Consensus 427 ~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGt 506 (1108)
+ ..++++|+++++++|+.||.
T Consensus 227 ----------v-------------------------------------------------~~~~~s~~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 227 ----------I-------------------------------------------------FSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp ----------E-------------------------------------------------EEEEECTTSSEEEEEETTSC
T ss_pred ----------e-------------------------------------------------EEEEECCCCCEEEEEcCCCc
Confidence 0 01145667779999999999
Q ss_pred EEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceee
Q 001279 507 VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1108)
Q Consensus 507 VriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1108)
|++||+..+... .+..|...|++++|+|++++|++++.||.|++|++....
T Consensus 248 i~~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~----------------- 298 (337)
T 1gxr_A 248 VEVLHVNKPDKY------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA----------------- 298 (337)
T ss_dssp EEEEETTSSCEE------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------
T ss_pred EEEEECCCCCeE------------EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe-----------------
Confidence 999999887633 356788999999999999999999999999999988752
Q ss_pred cccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001279 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1108)
Q Consensus 587 ~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~ 633 (1108)
.+ ....|...|++++|+|++++|++|+.||.|++||+.
T Consensus 299 --------~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 299 --------SI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp --------EE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred --------EE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 12 334689999999999999999999999999999973
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=305.63 Aligned_cols=313 Identities=15% Similarity=0.189 Sum_probs=230.1
Q ss_pred EeCCCCC-CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee----ecCCCCeeEEEEecCCCEEEEEeCCCcEEEEE
Q 001279 71 LISPSQL-PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC----LKWESNITAFSVISGSHFMYIGDENGLMSVIK 145 (1108)
Q Consensus 71 ~~~~h~~-~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~----~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~ 145 (1108)
.+.+|.. +|.+|+|+|++.+|++++.|++|+|||+.++..... ..|...|++++|+|++++|++|+.|++|+||+
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~ 89 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence 4567877 999999999999999999999999999988864322 25888999999999999999999999999999
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE---E-EEeCCCcc
Q 001279 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI---I-FVGGGKDL 221 (1108)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~---~-~~~~~~~~ 221 (1108)
++....... ..+.+|. ..|.+++|+| ++++|++++.|+.|++||+.++.. + .+.+|
T Consensus 90 ~~~~~~~~~---~~~~~h~------------~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h--- 149 (345)
T 3fm0_A 90 KNQDDFECV---TTLEGHE------------NEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH--- 149 (345)
T ss_dssp ECCC-EEEE---EEECCCS------------SCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC---
T ss_pred ccCCCeEEE---EEccCCC------------CCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc---
Confidence 875432333 3366666 7899999999 788899999999999999987532 2 22233
Q ss_pred cccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeec
Q 001279 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLEL 301 (1108)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~ 301 (1108)
...|++++|. |++.+|++|+.||.|++|+....
T Consensus 150 ---------------------------~~~v~~~~~~-p~~~~l~s~s~d~~i~~w~~~~~------------------- 182 (345)
T 3fm0_A 150 ---------------------------TQDVKHVVWH-PSQELLASASYDDTVKLYREEED------------------- 182 (345)
T ss_dssp ---------------------------CSCEEEEEEC-SSSSCEEEEETTSCEEEEEEETT-------------------
T ss_pred ---------------------------CCCeEEEEEC-CCCCEEEEEeCCCcEEEEEecCC-------------------
Confidence 5667778875 77777788877877777775321
Q ss_pred ccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCC
Q 001279 302 SSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1108)
Q Consensus 302 ~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~ 381 (1108)
T Consensus 183 -------------------------------------------------------------------------------- 182 (345)
T 3fm0_A 183 -------------------------------------------------------------------------------- 182 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhh
Q 001279 382 ATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATF 461 (1108)
Q Consensus 382 ~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~ 461 (1108)
T Consensus 183 -------------------------------------------------------------------------------- 182 (345)
T 3fm0_A 183 -------------------------------------------------------------------------------- 182 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEE
Q 001279 462 TKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVST 541 (1108)
Q Consensus 462 ~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~ 541 (1108)
..... ..+.+|...|++
T Consensus 183 ------------------------------------------------------~~~~~---------~~~~~h~~~v~~ 199 (345)
T 3fm0_A 183 ------------------------------------------------------DWVCC---------ATLEGHESTVWS 199 (345)
T ss_dssp ------------------------------------------------------EEEEE---------EEECCCSSCEEE
T ss_pred ------------------------------------------------------CEEEE---------EEecCCCCceEE
Confidence 10000 113356667888
Q ss_pred EEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEee-cCcCEEEEEEcCCCCEEEE
Q 001279 542 LSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAV 620 (1108)
Q Consensus 542 lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vtslafspdg~~Lav 620 (1108)
|+|+|++++|++|+.||+|+||+......... +........+.++..+.+ |...|++++|+|++.+||+
T Consensus 200 l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s 269 (345)
T 3fm0_A 200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG----------VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT 269 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEECTTCTTC----------CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEeccccCCCCcc----------ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEE
Confidence 88888888888888888888887643221100 000001112335555555 8999999999999999999
Q ss_pred EeCCCeEEEEEccCce------EEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCc-cEEEEEcCCcc
Q 001279 621 GFECGRVAVLDMNLLS------VLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE-EVIIVLFKDAK 693 (1108)
Q Consensus 621 Gs~dG~V~vwd~~~~~------~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~-~~L~s~s~Dg~ 693 (1108)
|+.|+.|++|+..... ..+..+...+|...|.+++|+| ++ .+|++++.||+
T Consensus 270 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p----------------------~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 270 ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP----------------------KEPGLLASCSDDGE 327 (345)
T ss_dssp EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS----------------------SSTTEEEEEETTSC
T ss_pred EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC----------------------CCceEEEEcCCCCc
Confidence 9999999999986542 2223344568999999999994 34 58999999999
Q ss_pred EEEEeCCCccee
Q 001279 694 ISIVGGSSENMI 705 (1108)
Q Consensus 694 v~v~d~~~g~~l 705 (1108)
|++|+..+++.+
T Consensus 328 v~~W~~~~~~~~ 339 (345)
T 3fm0_A 328 VAFWKYQRPEGL 339 (345)
T ss_dssp EEEEEECC----
T ss_pred EEEEEecCCCCc
Confidence 999999876644
No 27
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-31 Score=308.02 Aligned_cols=293 Identities=13% Similarity=0.164 Sum_probs=231.2
Q ss_pred eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
...+.+|..+|.+++|+|++.+|++++.|++|+|||..+++....+ .+...|.+++|+|++.++++|+.|+.+++|++.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 3456789999999999999999999999999999999988777666 466789999999999999999999999999986
Q ss_pred cCCCee-eeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccc
Q 001279 148 ADEGKL-FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKD 225 (1108)
Q Consensus 148 ~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~ 225 (1108)
...... ......+..|. ..|.++.|+| ++.+|++++.|++|++||+.+++.+. +.+|
T Consensus 137 ~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h------- 195 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHT------------NYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGH------- 195 (354)
T ss_dssp CCTTCCSGGGCEEEEECS------------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECC-------
T ss_pred ccccccccccceeeeccC------------CcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-------
Confidence 432111 01112233444 7899999988 67789999999999999999987754 4456
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC--CCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccc
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS--SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp--dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~ 303 (1108)
...|++++|. | +|.+|++|+.||.|++||+.++.. +
T Consensus 196 -----------------------~~~v~~~~~~-~~~~g~~l~sgs~Dg~v~~wd~~~~~~-----------~------- 233 (354)
T 2pbi_B 196 -----------------------GADVLCLDLA-PSETGNTFVSGGCDKKAMVWDMRSGQC-----------V------- 233 (354)
T ss_dssp -----------------------SSCEEEEEEC-CCSSCCEEEEEETTSCEEEEETTTCCE-----------E-------
T ss_pred -----------------------CCCeEEEEEE-eCCCCCEEEEEeCCCeEEEEECCCCcE-----------E-------
Confidence 6789999875 4 578999999999999999864310 0
Q ss_pred ccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCC
Q 001279 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1108)
Q Consensus 304 ~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~ 383 (1108)
..+ .+
T Consensus 234 -------~~~-------------------~~------------------------------------------------- 238 (354)
T 2pbi_B 234 -------QAF-------------------ET------------------------------------------------- 238 (354)
T ss_dssp -------EEE-------------------CC-------------------------------------------------
T ss_pred -------EEe-------------------cC-------------------------------------------------
Confidence 000 00
Q ss_pred CCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhcc
Q 001279 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1108)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1108)
|...|
T Consensus 239 -------------------------------------------------h~~~v-------------------------- 243 (354)
T 2pbi_B 239 -------------------------------------------------HESDV-------------------------- 243 (354)
T ss_dssp -------------------------------------------------CSSCE--------------------------
T ss_pred -------------------------------------------------CCCCe--------------------------
Confidence 00011
Q ss_pred ccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEE
Q 001279 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1108)
Q Consensus 464 ~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~la 543 (1108)
..++++|++++|++|+.||+|++||+........+. ...+...+++++
T Consensus 244 -----------------------~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~---------~~~~~~~~~~~~ 291 (354)
T 2pbi_B 244 -----------------------NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS---------KESIIFGASSVD 291 (354)
T ss_dssp -----------------------EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---------CTTCCSCEEEEE
T ss_pred -----------------------EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---------CCCcccceeEEE
Confidence 122456777799999999999999998765432111 123445799999
Q ss_pred EEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeC
Q 001279 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE 623 (1108)
Q Consensus 544 fs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~ 623 (1108)
|+|++++|++|+.||.|+||++... .++..+.+|...|++++|+|++++||+|+.
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~-------------------------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKG-------------------------SRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTC-------------------------SEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EeCCCCEEEEEECCCcEEEEECCCC-------------------------ceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 9999999999999999999998664 245677899999999999999999999999
Q ss_pred CCeEEEEE
Q 001279 624 CGRVAVLD 631 (1108)
Q Consensus 624 dG~V~vwd 631 (1108)
||+|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-31 Score=301.02 Aligned_cols=204 Identities=12% Similarity=0.198 Sum_probs=172.6
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCee
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~ 110 (1108)
.||...|.+++|+|++++||+|+.||.|+|||..... ......|..+|.+++|+|++.+|++++.|++|++||+.+++.
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence 4889999999999999999999999999999997654 446678999999999999999999999999999999999988
Q ss_pred eeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 111 ~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
+..+ .|...|++++|+|++++|++|+.||+|++|++... ..+. ..+.+|. ..|.+++|+|. +
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~---~~~~~h~------------~~v~~v~~~p~-~ 152 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALE---QTFEGHE------------HFVMCVAFNPK-D 152 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT-TEEE---EEECCCC------------SCEEEEEECTT-C
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC-cchh---hhhcccC------------CcEEEEEECCC-C
Confidence 7776 68899999999999999999999999999998753 1332 2355665 78999999985 5
Q ss_pred CCEEEEEECCCeEEEEEccCCeEE-EEe-CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeec-CCCCEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQII-FVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS-SSGSILA 266 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s-pdg~~l~ 266 (1108)
+.+|++|+.|++|++||+...... ... ++ ...|..++|.. +++.+|+
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ------------------------------ERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCC------------------------------TTCEEEEEECCSTTCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCC------------------------------cCcEEEEEEEEcCCCCEEE
Confidence 677999999999999999876432 222 22 56788888752 4788999
Q ss_pred EEEccCcEEEEecCCC
Q 001279 267 VGYIDGDILLWNTSTT 282 (1108)
Q Consensus 267 sg~~DG~I~lWd~~~~ 282 (1108)
+|+.||+|++||+.++
T Consensus 203 s~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTK 218 (304)
T ss_dssp EEETTSEEEEEETTTT
T ss_pred EEcCCCeEEEEeCCCC
Confidence 9999999999998643
No 29
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=331.46 Aligned_cols=365 Identities=10% Similarity=0.129 Sum_probs=261.1
Q ss_pred CCceEEEEcCCCC-EEEEE----------ECCCcEEEEecCCcc---eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEE
Q 001279 36 ATASILAFDHIQR-LLAIA----------TLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1108)
Q Consensus 36 ~~is~la~sp~~~-~LA~G----------s~dG~I~iw~~~~~~---~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~ 101 (1108)
..|.+++|+|+++ +||+| +.||.|+||+..... .+....|..+|.+++|+|++.+|++++.|+.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4688999999987 99999 889999999997654 445567899999999999999999999999999
Q ss_pred EEEcCC----Ceeeeee-cCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeee-eceeecccccccccCCCCC
Q 001279 102 VWSLES----RSLACCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQ-LPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 102 vWd~~s----~~~~~~~-~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~-~~~~i~~~~~~~~~~~~~~ 174 (1108)
+||+.+ .+.+..+ .|...|++++|+|+ ++++++|+.||.|++|++......... .++.+. ....
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------~~~~ 163 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG---------QSMS 163 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC---------CSCC
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc---------cccC
Confidence 999988 3344444 68899999999998 899999999999999998754311000 001110 0012
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeE
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vts 254 (1108)
+...|.+++|+|. .+.+|++++.||.|++||+.+++.+......... ..+...|++
T Consensus 164 ~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------------------~~~~~~v~~ 219 (416)
T 2pm9_A 164 SVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN-----------------------SGIKQQLSV 219 (416)
T ss_dssp SSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS-----------------------SCCCCCEEE
T ss_pred CCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccc-----------------------cccCCceEE
Confidence 2378999999984 2677999999999999999998876554320000 011567999
Q ss_pred EEeecCCC-CEEEEEEccC---cEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEE
Q 001279 255 LCWASSSG-SILAVGYIDG---DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLF 330 (1108)
Q Consensus 255 l~w~spdg-~~l~sg~~DG---~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~ll 330 (1108)
++|. |++ .+|++++.|| .|++||+.+..... .. ..
T Consensus 220 ~~~~-~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~----------~~------------------------~~------ 258 (416)
T 2pm9_A 220 VEWH-PKNSTRVATATGSDNDPSILIWDLRNANTPL----------QT------------------------LN------ 258 (416)
T ss_dssp EEEC-SSCTTEEEEEECCSSSCCCCEEETTSTTSCS----------BC------------------------CC------
T ss_pred EEEC-CCCCCEEEEEECCCCCceEEEEeCCCCCCCc----------EE------------------------ee------
Confidence 9986 887 6899999999 99999997541100 00 00
Q ss_pred EEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceee
Q 001279 331 VYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTT 410 (1108)
Q Consensus 331 v~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~ 410 (1108)
.+
T Consensus 259 --~~---------------------------------------------------------------------------- 260 (416)
T 2pm9_A 259 --QG---------------------------------------------------------------------------- 260 (416)
T ss_dssp --SC----------------------------------------------------------------------------
T ss_pred --cC----------------------------------------------------------------------------
Confidence 00
Q ss_pred eccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccc
Q 001279 411 LLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITK 490 (1108)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~ 490 (1108)
|...+ ..++
T Consensus 261 ----------------------~~~~v-------------------------------------------------~~~~ 269 (416)
T 2pm9_A 261 ----------------------HQKGI-------------------------------------------------LSLD 269 (416)
T ss_dssp ----------------------CSSCE-------------------------------------------------EEEE
T ss_pred ----------------------ccCce-------------------------------------------------eEEE
Confidence 00001 1113
Q ss_pred cCC-CCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC-CeEEEEecCceEEEEEecCC
Q 001279 491 CHS-VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGS 568 (1108)
Q Consensus 491 ~s~-~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~-~~Lasg~~dG~V~lw~l~~~ 568 (1108)
++| ++++|++|+.||+|++||+..+.+. ..+.+|...|++++|+|++ .+|++++.||.|+||++...
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAEQL-----------SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCCEE-----------EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCccc-----------eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 444 6668999999999999999887754 3466888999999999999 89999999999999999876
Q ss_pred CCCccccccc--cC---------ccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCc
Q 001279 569 LDAKNFLFVL--ET---------KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 569 ~~~~~~~~~~--~~---------~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~ 635 (1108)
.......-.. .. .+.+....+...+.+ .....|..+|++++|+|+|++||+|+.||+|+|||+.+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 339 TNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 4321110000 00 000000000011111 222347888999999999999999999999999999764
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-31 Score=306.70 Aligned_cols=204 Identities=14% Similarity=0.188 Sum_probs=173.9
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc-ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~ 108 (1108)
...||...|.+++|+|++++||+|+.||.|+|||.... .......|...|.+++|+|++.+|++++.|+.|++|++...
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence 34599999999999999999999999999999998544 34456678889999999999999999999999999998654
Q ss_pred e-------eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001279 109 S-------LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 109 ~-------~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
. ......|...|++++|++++.+|++|+.||+|++|++.. +++.. .+.+|. ..|.+
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~~~~~---~~~~h~------------~~v~~ 201 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES--GQLLQ---SFHGHG------------ADVLC 201 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEE---EEECCS------------SCEEE
T ss_pred ccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CeEEE---EEcCCC------------CCeEE
Confidence 1 122336888999999999999999999999999999864 44443 255665 77999
Q ss_pred EecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
+.|+|..++.+|++|+.||.|++||+.+++.+.. .+| ...|++++|. |
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h------------------------------~~~v~~v~~~-p 250 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH------------------------------ESDVNSVRYY-P 250 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC------------------------------SSCEEEEEEC-T
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC------------------------------CCCeEEEEEe-C
Confidence 9999876788899999999999999999877554 344 7789999986 9
Q ss_pred CCCEEEEEEccCcEEEEecCC
Q 001279 261 SGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~ 281 (1108)
++..|++|+.||+|++||+..
T Consensus 251 ~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 251 SGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEeCCCeEEEEECCC
Confidence 999999999999999999864
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=313.48 Aligned_cols=204 Identities=15% Similarity=0.188 Sum_probs=160.9
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC------------cceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCc
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG------------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~------------~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~ 99 (1108)
.+++..|.+++|+|||++||+|+ |+.+++|+... ........|..+|.+++|+|+ ++|++++.|++
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCE
Confidence 45677899999999999999988 77788886311 111233346778999999998 58899999999
Q ss_pred EEEEEcCCCeeeee-----ecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001279 100 IQVWSLESRSLACC-----LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 100 I~vWd~~s~~~~~~-----~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
|+|||+.+++.+.. ..|...|++++|+|++++|++|+.||+|++|++.. +++.. .+.+|.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~~~~~---~~~~h~---------- 169 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--QVVLS---SYRAHA---------- 169 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEE---EECCCS----------
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEE---EEcCcC----------
Confidence 99999999865432 26889999999999999999999999999999764 55553 366776
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeE
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vts 254 (1108)
..|.+++|+|. ...+|++++.|++|++||+.+++....... . .+...+++
T Consensus 170 --~~V~~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~--------------------~~~~~~~~ 219 (344)
T 4gqb_B 170 --AQVTCVAASPH-KDSVFLSCSEDNRILLWDTRCPKPASQIGC-------S--------------------APGYLPTS 219 (344)
T ss_dssp --SCEEEEEECSS-CTTEEEEEETTSCEEEEETTSSSCEEECC-------------------------------CCCEEE
T ss_pred --CceEEEEecCC-CCCceeeeccccccccccccccceeeeeec-------c--------------------eeecccee
Confidence 88999999985 334688999999999999999876554322 0 01456899
Q ss_pred EEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 255 LCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 255 l~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
++|...++.+|++|+.||+|++||+.++
T Consensus 220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 220 LAWHPQQSEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred eeecCCCCcceEEeccCCcEEEEECCCC
Confidence 9987446778999999999999998654
No 32
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.8e-32 Score=344.06 Aligned_cols=436 Identities=15% Similarity=0.130 Sum_probs=299.9
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~ 108 (1108)
...+|+..|++++|+|++++||+|+.||.|+||+....+. .....|..+|++++|+|++.+|++++.|+.|++||+.++
T Consensus 50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (814)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence 3458999999999999999999999999999999965554 456779999999999999999999999999999999987
Q ss_pred -eeeeee-cCCCCeeEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 109 -SLACCL-KWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 109 -~~~~~~-~~~~~Itsl~~~~-~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
.....+ .|...|++++|+| +++++++|+.||.|++|++....... .+..+. ...|.++.|+
T Consensus 130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~-----~~~~~~-----------~~~v~~~~~~ 193 (814)
T 3mkq_A 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF-----TLTTGQ-----------ERGVNYVDYY 193 (814)
T ss_dssp SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE-----EEECCC-----------TTCCCEEEEC
T ss_pred ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee-----EEecCC-----------CCCEEEEEEE
Confidence 555544 6788999999999 88999999999999999986432222 132221 1569999999
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 186 PNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
|..++..|++++.||.|++||+.+++.... .+| ...|++++|. |+|.+
T Consensus 194 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~ 242 (814)
T 3mkq_A 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH------------------------------MSNVSFAVFH-PTLPI 242 (814)
T ss_dssp CSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC------------------------------SSCEEEEEEC-SSSSE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEc-CCCCE
Confidence 876788899999999999999999876543 445 6789999986 99999
Q ss_pred EEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCce--EEEEeCCCCCCcce
Q 001279 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR--LFVYGGDEIGSEEV 342 (1108)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~--llv~gg~~~~~~~~ 342 (1108)
|++++.||.|++||..++.. +..+.. ...++..+.| .+++. +++++..+.
T Consensus 243 l~~~~~dg~v~vwd~~~~~~-----------~~~~~~----~~~~v~~~~~--------~~~~~~~~~~~~~~~~----- 294 (814)
T 3mkq_A 243 IISGSEDGTLKIWNSSTYKV-----------EKTLNV----GLERSWCIAT--------HPTGRKNYIASGFDNG----- 294 (814)
T ss_dssp EEEEETTSCEEEEETTTCSE-----------EEEECC----SSSSEEEEEE--------CTTCGGGEEEEEETTE-----
T ss_pred EEEEeCCCeEEEEECCCCcE-----------EEEeec----CCCcEEEEEE--------ccCCCceEEEEEeCCC-----
Confidence 99999999999999976531 111111 1223444422 33333 455555442
Q ss_pred EEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCC
Q 001279 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1108)
Q Consensus 343 ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 422 (1108)
+.++.+.. + ...+.+.|+ |.++........
T Consensus 295 ~~~~~~~~--~-----------------~~~~~~~~~------------------g~~~~~~~~~~~------------- 324 (814)
T 3mkq_A 295 FTVLSLGN--D-----------------EPTLSLDPV------------------GKLVWSGGKNAA------------- 324 (814)
T ss_dssp EEEEECSC--C-----------------SCCEEECSS------------------SEEEEECCTTSC-------------
T ss_pred EEEEEcCC--C-----------------CceeEECCC------------------CCEEEECccccc-------------
Confidence 22222111 0 111222222 222211100000
Q ss_pred CccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEe
Q 001279 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1108)
Q Consensus 423 ~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs 502 (1108)
...+..... ... + .. ..+... ...-...+++...+..++++|+++++++++
T Consensus 325 -----------~~~~~~~~~---~~~------~----~~--~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 375 (814)
T 3mkq_A 325 -----------ASDIFTAVI---RGN------E----EV--EQDEPL---SLQTKELGSVDVFPQSLAHSPNGRFVTVVG 375 (814)
T ss_dssp -----------TTCEEEEEC---CSC------C----CC--CSSSCB---CCCCEEECCCSSCCSEEEECTTSSEEEEEE
T ss_pred -----------ceeeeeeec---ccc------c----cc--ccCccc---eeeeecCCCCccCCceeEECCCCCEEEEec
Confidence 000000000 000 0 00 000000 000001122333445668999999999998
Q ss_pred cCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCcc
Q 001279 503 HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKS 582 (1108)
Q Consensus 503 ~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~ 582 (1108)
||.+++|++...... +...|++++|+|++++|++++.+|.|++|+.
T Consensus 376 -~~~~~i~~~~~~~~~----------------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~----------------- 421 (814)
T 3mkq_A 376 -DGEYVIYTALAWRNK----------------AFGKCQDFVWGPDSNSYALIDETGQIKYYKN----------------- 421 (814)
T ss_dssp -TTEEEEEETTTTEEE----------------EEEECSEEEECTTSSCEEEECTTCCEEEEET-----------------
T ss_pred -CCEEEEEECcccccc----------------CCCceEEEEEeCCCCeEEEEeCCCcEEEEEC-----------------
Confidence 899999997654422 2246889999999999999999999999952
Q ss_pred ceeecccCCcceEEEEEeecCcCEEEEEEcCCC---CEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeec
Q 001279 583 EVHALPEGKISLCRAVFSLVNSPVRALQFTSSG---AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEF 659 (1108)
Q Consensus 583 ~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg---~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~ 659 (1108)
+..|...|++++|+|++ .+|++++.||.|++||+.++..+.. +..|.. .+.|+
T Consensus 422 ----------------~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~---~~~~~~---~v~~s-- 477 (814)
T 3mkq_A 422 ----------------FKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR---IDVNAK---DVIWS-- 477 (814)
T ss_dssp ----------------TEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE---ESSCEE---EEEEC--
T ss_pred ----------------CCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE---EecCCC---EEEEc--
Confidence 14678889999999998 6889999999999999999887743 333443 88888
Q ss_pred ccCccccCCCCCCCCCCCCCCCccEEEEE------cCCccEEEE
Q 001279 660 KNTHSLAKNPNHSEREVPVNPAEEVIIVL------FKDAKISIV 697 (1108)
Q Consensus 660 ~~~~~~~~~p~~~~~~~~~~p~~~~L~s~------s~Dg~v~v~ 697 (1108)
|++.+|+++ +.|..+.+|
T Consensus 478 --------------------~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 478 --------------------DNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp --------------------TTSSEEEEEECCCSSCSCSEEEEE
T ss_pred --------------------CCCCEEEEEEcCcccCCceEEEEE
Confidence 668889999 555444444
No 33
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.9e-31 Score=298.78 Aligned_cols=201 Identities=17% Similarity=0.233 Sum_probs=165.2
Q ss_pred eeCCCCCceEEEEcCCC-CEEEEEECCCcEEEEecCCc------ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001279 31 HYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~-~~LA~Gs~dG~I~iw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1108)
..||.+.|.+++|+|++ .+||+|+.||.|++|++... ......+|..+|.+++|+|++.+|++++.|++|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 35999999999999965 89999999999999998532 233567899999999999999999999999999999
Q ss_pred EcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 104 d~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
|+.+++.+..+ .|...|++++|+|++.++++|+.||+|++|++.. ... ..+.+|. ..|.++
T Consensus 93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---~~~---~~~~~h~------------~~v~~~ 154 (319)
T 3frx_A 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCL---ATLLGHN------------DWVSQV 154 (319)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---CEE---EEECCCS------------SCEEEE
T ss_pred ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeE---EEEeccC------------CcEEEE
Confidence 99999888776 6889999999999999999999999999999752 332 2355555 789999
Q ss_pred ecccCC----CCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEe
Q 001279 183 LPHPNS----SGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1108)
Q Consensus 183 ~f~P~~----~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1108)
.|+|.. ++..+++++.|+.|++||+.+.+... +.+| ...|++++|
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h------------------------------~~~v~~~~~ 204 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH------------------------------NSNINTLTA 204 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------CSCEEEEEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC------------------------------CCcEEEEEE
Confidence 998842 34568889999999999988876543 3444 667778886
Q ss_pred ecCCCCEEEEEEccCcEEEEecC
Q 001279 258 ASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
. |+|.+|++|+.||.|++||+.
T Consensus 205 s-p~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 205 S-PDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp C-TTSSEEEEEETTCEEEEEETT
T ss_pred c-CCCCEEEEEeCCCeEEEEECC
Confidence 4 788888888888888888764
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.9e-32 Score=312.08 Aligned_cols=320 Identities=17% Similarity=0.198 Sum_probs=210.3
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC------CCcEEEEEEecCCCee
Q 001279 80 KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE------NGLMSVIKYDADEGKL 153 (1108)
Q Consensus 80 ~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~------dg~V~vw~~d~~~~~l 153 (1108)
..+.+.++. .++..+.+.....|++....+ ..|...|++++|+|++++|++|+. ||.|++|+... +..
T Consensus 9 sg~d~g~~~-~~~~~~g~~~~~~w~~p~~~p---~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~--~~~ 82 (357)
T 4g56_B 9 SGVDLGTEN-LYFQSNGSSKGSAWGRPVTAP---ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE--GAP 82 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-----
T ss_pred cCCCCCccc-eEEecCCCccccccCCCCCCc---ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC--CCc
Confidence 344455554 344445577889999865443 358889999999999999999997 56666665432 221
Q ss_pred eee-ceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-----eCCCcccccccc
Q 001279 154 FQL-PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-----GGGKDLQLKDGV 227 (1108)
Q Consensus 154 ~~~-~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-----~~~~~~~~~~~~ 227 (1108)
... ......| ...|++++|+| ++. +++++.||+|+|||+.+++.... .+|
T Consensus 83 ~~~~~~~~~~~------------~~~V~~~~~s~--d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h--------- 138 (357)
T 4g56_B 83 NESLCTAGVQT------------EAGVTDVAWVS--EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEH--------- 138 (357)
T ss_dssp CGGGCSEEEEC------------SSCEEEEEEET--TTE-EEEEETTSCEEEC--------CCCCEEECCC---------
T ss_pred ceeEecccCCC------------CCCEEEEEEcC--CCC-EEEEECCCEEEEeeccccceeEEEeeccCCC---------
Confidence 110 0111222 26799999998 554 88899999999999988764322 233
Q ss_pred cCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCC
Q 001279 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 307 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ 307 (1108)
...|++++|. |+|++|++|+.||.|++||+.++.. +.
T Consensus 139 ---------------------~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~-----------~~---------- 175 (357)
T 4g56_B 139 ---------------------DDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAV-----------LK---------- 175 (357)
T ss_dssp ---------------------SSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEE-----------EE----------
T ss_pred ---------------------CCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcE-----------EE----------
Confidence 7789999985 9999999999999999999865410 00
Q ss_pred ccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCC
Q 001279 308 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH 387 (1108)
Q Consensus 308 ~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~ 387 (1108)
.+ .+
T Consensus 176 ----~~-------------------~~----------------------------------------------------- 179 (357)
T 4g56_B 176 ----SY-------------------NA----------------------------------------------------- 179 (357)
T ss_dssp ----EE-------------------CC-----------------------------------------------------
T ss_pred ----EE-------------------cC-----------------------------------------------------
Confidence 00 00
Q ss_pred cceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCC
Q 001279 388 KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS 467 (1108)
Q Consensus 388 ~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1108)
|...++++
T Consensus 180 ---------------------------------------------h~~~v~~v--------------------------- 187 (357)
T 4g56_B 180 ---------------------------------------------HSSEVNCV--------------------------- 187 (357)
T ss_dssp ---------------------------------------------CSSCEEEE---------------------------
T ss_pred ---------------------------------------------CCCCEEEE---------------------------
Confidence 01111111
Q ss_pred CCccCcccccccCCcccCCCccccCCCC-cEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe
Q 001279 468 HTQAGHIKWPLSGGVPSPVPITKCHSVD-RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1108)
Q Consensus 468 ~~~~~~~~wp~~gg~~~~~~~~~~s~~~-~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~ 546 (1108)
++++++ .++++++.||+|+|||+..+..... .....|...|++++|+|
T Consensus 188 ----------------------~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~---------~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 188 ----------------------AACPGKDTIFLSCGEDGRILLWDTRKPKPATR---------IDFCASDTIPTSVTWHP 236 (357)
T ss_dssp ----------------------EECTTCSSCEEEEETTSCEEECCTTSSSCBCB---------CCCTTCCSCEEEEEECT
T ss_pred ----------------------EEccCCCceeeeeccCCceEEEECCCCceeee---------eeeccccccccchhhhh
Confidence 222332 2789999999999999987764311 23456778899999999
Q ss_pred CC-CeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCC-CEEEEEeCC
Q 001279 547 IN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFEC 624 (1108)
Q Consensus 547 d~-~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg-~~LavGs~d 624 (1108)
++ .+|++|+.|+.|+||++.... ++..+..|...|++|+|+|++ ++||+|+.|
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~-------------------------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPD-------------------------SAQTSAVHSQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGG-------------------------GCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred cccceEEEeecccceeEEECCCCc-------------------------EeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence 75 678899999999999987652 356778999999999999987 689999999
Q ss_pred CeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 625 GRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 625 G~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
|+|+|||+.+++++. ..+|.+.|.+|+|+|. ++.+|++++.|++|++||..+
T Consensus 292 ~~i~iwd~~~~~~~~----~~~H~~~V~~vafsP~---------------------d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 292 CTVAVLDADFSEVFR----DLSHRDFVTGVAWSPL---------------------DHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SCEEEECTTSCEEEE----ECCCSSCEEEEEECSS---------------------STTEEEEEETTSCEEEEECC-
T ss_pred CEEEEEECCCCcEeE----ECCCCCCEEEEEEeCC---------------------CCCEEEEEcCCCeEEEEECCC
Confidence 999999999998873 2479999999999941 467899999999999999864
No 35
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-33 Score=326.54 Aligned_cols=340 Identities=14% Similarity=0.200 Sum_probs=254.9
Q ss_pred CCEEEEEEeeCCC-EEEEE----------eCCCcEEEEEcCCCe---eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEE
Q 001279 77 LPYKNLEFLQNQG-FLISI----------TNDNEIQVWSLESRS---LACCLKWESNITAFSVISGSHFMYIGDENGLMS 142 (1108)
Q Consensus 77 ~~V~~l~fs~d~~-~L~S~----------s~d~~I~vWd~~s~~---~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~ 142 (1108)
.+|.+++|+|++. +|+++ +.|+.|+|||+.++. .+..+.+...|++++|+|++++|++|+.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4688999999987 88888 889999999999885 556667889999999999999999999999999
Q ss_pred EEEEecCC--CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe------EEE
Q 001279 143 VIKYDADE--GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ------IIF 214 (1108)
Q Consensus 143 vw~~d~~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~------~~~ 214 (1108)
+|+++... .... ..+.+|. ..|.+++|+|. .+.+|++++.||.|++||+.+++ ...
T Consensus 93 vw~~~~~~~~~~~~---~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 156 (416)
T 2pm9_A 93 LYSTNEANNAINSM---ARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPL 156 (416)
T ss_dssp EECCSSTTSCCCEE---EECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCB
T ss_pred Eeecccccccccch---hhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCcccccccccc
Confidence 99987521 1222 2355555 78999999984 37779999999999999998875 211
Q ss_pred EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC-CCEEEEEEccCcEEEEecCCCCCCCCccCCCC
Q 001279 215 VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-GSILAVGYIDGDILLWNTSTTASTKGQQTGSR 293 (1108)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd-g~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~ 293 (1108)
... ....+...|++++|. |+ +..|++++.||.|++||+.+...
T Consensus 157 ~~~--------------------------~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~--------- 200 (416)
T 2pm9_A 157 TPG--------------------------QSMSSVDEVISLAWN-QSLAHVFASAGSSNFASIWDLKAKKE--------- 200 (416)
T ss_dssp CCC--------------------------CSCCSSCCCCEEEEC-SSCTTEEEEESSSSCEEEEETTTTEE---------
T ss_pred ccc--------------------------cccCCCCCeeEEEeC-CCCCcEEEEEcCCCCEEEEECCCCCc---------
Confidence 110 001126789999986 88 78999999999999999865310
Q ss_pred CceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccce
Q 001279 294 NNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFAD 373 (1108)
Q Consensus 294 ~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~ 373 (1108)
+..+... . .. .
T Consensus 201 --~~~~~~~--------------~------~~----------~------------------------------------- 211 (416)
T 2pm9_A 201 --VIHLSYT--------------S------PN----------S------------------------------------- 211 (416)
T ss_dssp --EEEECCC--------------C------CS----------S-------------------------------------
T ss_pred --ceEEecc--------------c------cc----------c-------------------------------------
Confidence 0000000 0 00 0
Q ss_pred EEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchh
Q 001279 374 MILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSK 453 (1108)
Q Consensus 374 ~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~ 453 (1108)
-+...+
T Consensus 212 ----------------------------------------------------------~~~~~v---------------- 217 (416)
T 2pm9_A 212 ----------------------------------------------------------GIKQQL---------------- 217 (416)
T ss_dssp ----------------------------------------------------------CCCCCE----------------
T ss_pred ----------------------------------------------------------ccCCce----------------
Confidence 000011
Q ss_pred hhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCC-cEEEEEecCC---cEEEEeCCCCc-eeeEeeeccccc
Q 001279 454 GLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD-RVYLAGYHDG---SVRIWDATYPV-FKLICALDAEVQ 528 (1108)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~-~llatgs~DG---tVriWd~~~~~-l~~~~~l~~~~~ 528 (1108)
..++++|++ .++++++.|| .|++||+.... +.
T Consensus 218 ---------------------------------~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---------- 254 (416)
T 2pm9_A 218 ---------------------------------SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---------- 254 (416)
T ss_dssp ---------------------------------EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS----------
T ss_pred ---------------------------------EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc----------
Confidence 122445554 5899999999 99999998753 22
Q ss_pred eeecc-CCCCCeEEEEEEe-CCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCE
Q 001279 529 GIEVA-GSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV 606 (1108)
Q Consensus 529 ~~~l~-~h~~~Vt~lafs~-d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~V 606 (1108)
..+. +|...|++++|+| ++++|++++.||.|+||++... .++..+..|...|
T Consensus 255 -~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-------------------------~~~~~~~~~~~~v 308 (416)
T 2pm9_A 255 -QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-------------------------EQLSQFPARGNWC 308 (416)
T ss_dssp -BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-------------------------CEEEEEECSSSCC
T ss_pred -EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-------------------------ccceeecCCCCce
Confidence 2355 7999999999999 9999999999999999998775 2567788999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEEe--------------------------------ecCCCCCCceEE
Q 001279 607 RALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFT--------------------------------DDISGSSSPIIS 653 (1108)
Q Consensus 607 tslafspdg-~~LavGs~dG~V~vwd~~~~~~~~~~--------------------------------~~~~~h~~~V~~ 653 (1108)
++++|+|++ ++|++|+.||.|+|||+.+....... .....|..+|.+
T Consensus 309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPA 388 (416)
T ss_dssp CCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCC
T ss_pred EEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccc
Confidence 999999999 89999999999999999876432100 000114455555
Q ss_pred EEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCc
Q 001279 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1108)
Q Consensus 654 l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g 702 (1108)
++|+ |++.+|++++.|+.|.+||.++.
T Consensus 389 ~~~s----------------------~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 389 AHWA----------------------FGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CEEE----------------------TTTEEECBCTTSSCBCCBCCCCC
T ss_pred eEEe----------------------eCCeEEEEeCCCCeEEEEEeccC
Confidence 5555 77999999999999999998764
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.1e-32 Score=316.81 Aligned_cols=355 Identities=12% Similarity=0.088 Sum_probs=250.7
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL- 114 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~- 114 (1108)
..+++++|+|++++||+|+.||.|++|+....+..........+....|++++.+|++++.|+.|++||+.+++....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3355899999999999999999999999977655433333345556678999999999999999999999999888876
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|...|++++|+|++++|++|+.||.|++|++... +.. ..+.+|. ..|.+++|+| ++.+|+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~---~~~~~h~------------~~v~~~~~~~--~~~~l~ 197 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNP---RTLIGHR------------ATVTDIAIID--RGRNVL 197 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCC---EEEECCS------------SCEEEEEEET--TTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCc---eEEcCCC------------CcEEEEEEcC--CCCEEE
Confidence 78899999999999999999999999999998753 332 2255555 7899999998 688899
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCCc----ccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001279 195 IAYENALVILWDVSEAQIIFVGGGKD----LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1108)
+++.||.|++||+.+++.+..+.... ......+. +.. ...........+++++|. |+|.+|++|+.
T Consensus 198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-------~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 267 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF--VGT-------DRQLHEISTSKKNNLEFG-TYGKYVIAGHV 267 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE--ECC-------CSSCGGGCCCCCCTTCSS-CTTEEEEEEET
T ss_pred EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe--cCC-------cceeeecccCcccceEEc-CCCCEEEEEcC
Confidence 99999999999999998766543200 00000000 000 000000114556666764 88889999999
Q ss_pred cCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccc
Q 001279 271 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 350 (1108)
Q Consensus 271 DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~ 350 (1108)
||.|++||+.+... .. .+
T Consensus 268 dg~i~i~d~~~~~~-----------~~--------------~~------------------------------------- 285 (420)
T 3vl1_A 268 SGVITVHNVFSKEQ-----------TI--------------QL------------------------------------- 285 (420)
T ss_dssp TSCEEEEETTTCCE-----------EE--------------EE-------------------------------------
T ss_pred CCeEEEEECCCCce-----------eE--------------Ec-------------------------------------
Confidence 99999998864310 00 00
Q ss_pred cccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccc
Q 001279 351 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 430 (1108)
Q Consensus 351 ~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1108)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCc-EEEEEecCCcEEE
Q 001279 431 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDR-VYLAGYHDGSVRI 509 (1108)
Q Consensus 431 ~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~-llatgs~DGtVri 509 (1108)
..++...+..++++|+++ ++++|+.||.|++
T Consensus 286 ------------------------------------------------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 286 ------------------------------------------------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp ------------------------------------------------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ------------------------------------------------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 000000111224556666 9999999999999
Q ss_pred EeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeeccc
Q 001279 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1108)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1108)
||+..+... +. ....+|...|+++.| +++++|++++.||.|++|++......... ...
T Consensus 318 wd~~~~~~~-~~--------~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~----------~~~-- 375 (420)
T 3vl1_A 318 WDLRSPECP-VG--------EFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPA----------IEF-- 375 (420)
T ss_dssp EETTCTTSC-SE--------EEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCE----------ECT--
T ss_pred EEcCCCcCc-hh--------hhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccc----------eec--
Confidence 999876521 00 112247778999855 58899999999999999999874221100 000
Q ss_pred CCcceEEEEEeecCcCEEEEEEcCCCC---EEEEEeCCCeEEEEEccCc
Q 001279 590 GKISLCRAVFSLVNSPVRALQFTSSGA---KLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 590 ~~g~~~~~~~~~h~~~Vtslafspdg~---~LavGs~dG~V~vwd~~~~ 635 (1108)
.....+..|.+.|++++|+|+++ .+++.+.+|.+.+|+++.+
T Consensus 376 ----~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 376 ----ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp ----TSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred ----cCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence 01133568899999999999998 5555556799999998753
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-31 Score=308.38 Aligned_cols=303 Identities=15% Similarity=0.199 Sum_probs=230.5
Q ss_pred CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCC-------------------CCeeEEEEecCCCEEE
Q 001279 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-------------------SNITAFSVISGSHFMY 133 (1108)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~-------------------~~Itsl~~~~~~~~l~ 133 (1108)
..|...|.+++|+|||.+|++++ ++.+++|++.+++.+..+... ..|++++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 36999999999999999999876 789999999999877665321 1399999999999999
Q ss_pred EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEE
Q 001279 134 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 213 (1108)
Q Consensus 134 vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~ 213 (1108)
+|+.||.|+||+++. ++... .+.+|. ..|.+++|+| ++.+|++++.|++|++||+.+++..
T Consensus 140 s~~~d~~i~iwd~~~--~~~~~---~~~~h~------------~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 140 TGAEDRLIRIWDIEN--RKIVM---ILQGHE------------QDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp EEETTSCEEEEETTT--TEEEE---EECCCS------------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEcCCCeEEEEECCC--CcEEE---EEccCC------------CCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeE
Confidence 999999999999764 44442 366665 7899999998 6888999999999999999999876
Q ss_pred EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC-CCCEEEEEEccCcEEEEecCCCCCCCCccCCC
Q 001279 214 FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGS 292 (1108)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~ 292 (1108)
....+ ...|++++|. | +|.+|++|+.||.|++||..++..
T Consensus 201 ~~~~~------------------------------~~~v~~~~~~-~~~~~~l~~~s~d~~v~iwd~~~~~~-------- 241 (393)
T 1erj_A 201 LTLSI------------------------------EDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFL-------- 241 (393)
T ss_dssp EEEEC------------------------------SSCEEEEEEC-STTCCEEEEEETTSCEEEEETTTCCE--------
T ss_pred EEEEc------------------------------CCCcEEEEEE-CCCCCEEEEEcCCCcEEEEECCCCcE--------
Confidence 65544 5678999986 6 999999999999999999865410
Q ss_pred CCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccc
Q 001279 293 RNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFA 372 (1108)
Q Consensus 293 ~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~ 372 (1108)
+.++.. . ..
T Consensus 242 ---~~~~~~----------------------~-----------~~----------------------------------- 250 (393)
T 1erj_A 242 ---VERLDS----------------------E-----------NE----------------------------------- 250 (393)
T ss_dssp ---EEEEC------------------------------------------------------------------------
T ss_pred ---EEeecc----------------------c-----------cc-----------------------------------
Confidence 000000 0 00
Q ss_pred eEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCch
Q 001279 373 DMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSS 452 (1108)
Q Consensus 373 ~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~ 452 (1108)
T Consensus 251 -------------------------------------------------------------------------------- 250 (393)
T 1erj_A 251 -------------------------------------------------------------------------------- 250 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeec-cccceee
Q 001279 453 KGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALD-AEVQGIE 531 (1108)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~-~~~~~~~ 531 (1108)
...+|...+..+++++++++|++|+.||+|++||+............ .......
T Consensus 251 -------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 305 (393)
T 1erj_A 251 -------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305 (393)
T ss_dssp ---------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred -------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence 00011111223366788889999999999999998765422111000 0111134
Q ss_pred ccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEE
Q 001279 532 VAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 611 (1108)
Q Consensus 532 l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslaf 611 (1108)
+.+|...|.+++|++++.+|++|+.||.|++|++... .++..+.+|...|++++|
T Consensus 306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-------------------------~~~~~l~~h~~~v~~v~~ 360 (393)
T 1erj_A 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------------------NPLLMLQGHRNSVISVAV 360 (393)
T ss_dssp EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------------------CEEEEEECCSSCEEEEEE
T ss_pred EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------------------eEEEEECCCCCCEEEEEe
Confidence 6789999999999999999999999999999998765 256778899999999999
Q ss_pred cC------CCCEEEEEeCCCeEEEEEccCc
Q 001279 612 TS------SGAKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 612 sp------dg~~LavGs~dG~V~vwd~~~~ 635 (1108)
++ ++++||+|+.||+|+|||+...
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 86 6889999999999999998653
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-30 Score=293.07 Aligned_cols=297 Identities=15% Similarity=0.221 Sum_probs=227.9
Q ss_pred cCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 115 KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.|.+.|++++|+|++ ++|++|+.|++|++|++.............+.+|. ..|.+++|+| ++.+|
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~s~--dg~~l 80 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------------HIVQDCTLTA--DGAYA 80 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS------------SCEEEEEECT--TSSEE
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc------------ccEEEEEECC--CCCEE
Confidence 688999999999965 89999999999999999754333322223456665 7899999988 78889
Q ss_pred EEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC
Q 001279 194 LIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG 272 (1108)
++++.|++|+|||+.+++.+. +.+| ...|.+++|. |++.+|++|+.||
T Consensus 81 ~s~s~D~~v~~wd~~~~~~~~~~~~h------------------------------~~~v~~~~~~-~~~~~l~s~s~D~ 129 (319)
T 3frx_A 81 LSASWDKTLRLWDVATGETYQRFVGH------------------------------KSDVMSVDID-KKASMIISGSRDK 129 (319)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECC------------------------------SSCEEEEEEC-TTSCEEEEEETTS
T ss_pred EEEeCCCEEEEEECCCCCeeEEEccC------------------------------CCcEEEEEEc-CCCCEEEEEeCCC
Confidence 999999999999999997754 4566 7889999985 9999999999999
Q ss_pred cEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccc
Q 001279 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1108)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1108)
+|++||+... .+. .+ .+..
T Consensus 130 ~i~vwd~~~~------------~~~--------------~~-------------------~~h~---------------- 148 (319)
T 3frx_A 130 TIKVWTIKGQ------------CLA--------------TL-------------------LGHN---------------- 148 (319)
T ss_dssp CEEEEETTSC------------EEE--------------EE-------------------CCCS----------------
T ss_pred eEEEEECCCC------------eEE--------------EE-------------------eccC----------------
Confidence 9999998521 000 00 0000
Q ss_pred cccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccC
Q 001279 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1108)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1108)
..+..+.+.|..
T Consensus 149 ----------------~~v~~~~~~~~~---------------------------------------------------- 160 (319)
T 3frx_A 149 ----------------DWVSQVRVVPNE---------------------------------------------------- 160 (319)
T ss_dssp ----------------SCEEEEEECCC-----------------------------------------------------
T ss_pred ----------------CcEEEEEEccCC----------------------------------------------------
Confidence 001111111110
Q ss_pred CCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeC
Q 001279 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1108)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~ 512 (1108)
....++.++++|+.||+|++||+
T Consensus 161 ---------------------------------------------------------~~~~~~~~l~s~~~d~~i~~wd~ 183 (319)
T 3frx_A 161 ---------------------------------------------------------KADDDSVTIISAGNDKMVKAWNL 183 (319)
T ss_dssp --------------------------------------------------------------CCEEEEEETTSCEEEEET
T ss_pred ---------------------------------------------------------CCCCCccEEEEEeCCCEEEEEEC
Confidence 11233448999999999999999
Q ss_pred CCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCc
Q 001279 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1108)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 592 (1108)
....+. ..+.+|...|++++|+|++++|++|+.||.|+||++...
T Consensus 184 ~~~~~~-----------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~------------------------ 228 (319)
T 3frx_A 184 NQFQIE-----------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK------------------------ 228 (319)
T ss_dssp TTTEEE-----------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT------------------------
T ss_pred Ccchhh-----------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------
Confidence 877654 346789999999999999999999999999999999875
Q ss_pred ceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecC-----CCCCCceEEEEeeecccCccccC
Q 001279 593 SLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI-----SGSSSPIISMTWTEFKNTHSLAK 667 (1108)
Q Consensus 593 ~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~-----~~h~~~V~~l~fs~~~~~~~~~~ 667 (1108)
.++..+. +...|++++|+|++.+|++++.++ +++|++.....+...... ..|...|.+++|+
T Consensus 229 -~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---------- 295 (319)
T 3frx_A 229 -KAMYTLS-AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS---------- 295 (319)
T ss_dssp -EEEEEEE-CCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC----------
T ss_pred -cEEEEec-CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEEC----------
Confidence 2344444 456899999999999999998766 999999988766443221 2356789999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCc
Q 001279 668 NPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1108)
Q Consensus 668 ~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g 702 (1108)
|++.+|++|+.|+.|++||..|+
T Consensus 296 ------------pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 296 ------------ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ------------TTSSEEEEEETTSCEEEEEEEEC
T ss_pred ------------CCCCEEEEeecCceEEEEEEeec
Confidence 67899999999999999998764
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.1e-31 Score=309.49 Aligned_cols=353 Identities=12% Similarity=0.118 Sum_probs=258.1
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~ 157 (1108)
.++.++|+|++.+|++++.|+.|++||+.+++....+.....+....+++++++|++|+.||.|++|++.. +....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~-- 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQRE-- 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTS--CEEEE--
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCC--cceee--
Confidence 46689999999999999999999999999988766665555556667889999999999999999999763 34432
Q ss_pred eeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEE-EEeCCCcccccccccCCCCCCCC
Q 001279 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDS 236 (1108)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 236 (1108)
.+.+|. ..|.+++|+| ++.+|++++.||.|++||+.+++.+ .+.+|
T Consensus 134 -~~~~h~------------~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h------------------ 180 (420)
T 3vl1_A 134 -IDQAHV------------SEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGH------------------ 180 (420)
T ss_dssp -ETTSSS------------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECC------------------
T ss_pred -eccccc------------CccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCC------------------
Confidence 244555 8899999998 6888999999999999999987654 34455
Q ss_pred CcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEee
Q 001279 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWS 316 (1108)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~ 316 (1108)
...|++++|. |++.+|++++.||.|++||+.++.. +..+.....
T Consensus 181 ------------~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~-----------~~~~~~~~~------------ 224 (420)
T 3vl1_A 181 ------------RATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTT-----------IHTFNRKEN------------ 224 (420)
T ss_dssp ------------SSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEE-----------EEEECBTTB------------
T ss_pred ------------CCcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCce-----------eEEeecCCC------------
Confidence 7889999986 9999999999999999999975411 100000000
Q ss_pred cccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcC
Q 001279 317 TNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTS 396 (1108)
Q Consensus 317 ~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~ 396 (1108)
....+..+.+.|...
T Consensus 225 --------------------------------------------------~~~~v~~~~~~~~~~--------------- 239 (420)
T 3vl1_A 225 --------------------------------------------------PHDGVNSIALFVGTD--------------- 239 (420)
T ss_dssp --------------------------------------------------TTCCEEEEEEEECCC---------------
T ss_pred --------------------------------------------------CCCCccEEEEecCCc---------------
Confidence 000111111111100
Q ss_pred CCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccc
Q 001279 397 PGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKW 476 (1108)
Q Consensus 397 ~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 476 (1108)
..
T Consensus 240 -~~----------------------------------------------------------------------------- 241 (420)
T 3vl1_A 240 -RQ----------------------------------------------------------------------------- 241 (420)
T ss_dssp -SS-----------------------------------------------------------------------------
T ss_pred -ce-----------------------------------------------------------------------------
Confidence 00
Q ss_pred cccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCC-eEEEEe
Q 001279 477 PLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGN 555 (1108)
Q Consensus 477 p~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~-~Lasg~ 555 (1108)
+...+...+..++++++++++++|+.||.|++||+..+.... ....+|...|++++|+|+++ +|++|+
T Consensus 242 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 242 -LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI----------QLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp -CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE----------EECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred -eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE----------EcccccCCCceeEEEeCCCCCEEEEEe
Confidence 000011123445889999999999999999999998776431 11346888999999999999 999999
Q ss_pred cCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEee-cCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 001279 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1108)
Q Consensus 556 ~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~ 634 (1108)
.||.|++|++..... ++..+.. |...|+++.+ +++++|++|+.||.|++||+..
T Consensus 311 ~dg~i~vwd~~~~~~------------------------~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 311 ENGMLAQWDLRSPEC------------------------PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TTSEEEEEETTCTTS------------------------CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred CCCeEEEEEcCCCcC------------------------chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 999999999987522 2344455 7788999855 5778999999999999999876
Q ss_pred ce---EEEE---eecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 635 LS---VLFF---TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 635 ~~---~~~~---~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
+. .+.. ...+.+|...|.+++|++.... ...|++.+.+|.+.+|+.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------------------~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 366 PESERPAIEFETPTFLVSNDDAVSQFCYVSDDES-------------------NGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTCCSCEECTTSCEEECCSSCCCCEEEEECCSSS-------------------SCEEEEEETTTEEEEEESCC
T ss_pred CCCCccceeccCccEEccCCcceEEEEEccCCCC-------------------cceEEEEcCCceEEEEeccC
Confidence 31 1100 0123468899999999954221 22678888899999999763
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-30 Score=298.03 Aligned_cols=205 Identities=12% Similarity=0.117 Sum_probs=170.3
Q ss_pred eeeCCCCCceEEEE-----cC-CCCEEEEEECCCcEEEEecCCc--------ceEEeCCCCCCEEEEEEeeCCCEEEEEe
Q 001279 30 VHYGIPATASILAF-----DH-IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQGFLISIT 95 (1108)
Q Consensus 30 ~~~G~~~~is~la~-----sp-~~~~LA~Gs~dG~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d~~~L~S~s 95 (1108)
...||...|++++| ++ ++++||+|+.||.|+||+.... ....+.+|..+|.+++|+|++.+|++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 44699999999999 77 9999999999999999998532 2335678999999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001279 96 NDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 96 ~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
.|++|++||+++++.+..+ .|...|++++|+|++++|++|+.||.|++|++.. ...... .....|
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~-~~~~~~----------- 161 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG--ECKFSS-AEKENH----------- 161 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS--CEEEEC-CTTTSC-----------
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC--Cceeee-ecccCC-----------
Confidence 9999999999999887766 6889999999999999999999999999999862 121110 111123
Q ss_pred CCCCeEEEecccCCC--------CCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCC
Q 001279 175 SHQPVVGVLPHPNSS--------GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~--------~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1108)
...|.++.|+|... +.+|++++.||.|++||........+.+|
T Consensus 162 -~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h---------------------------- 212 (343)
T 2xzm_R 162 -SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH---------------------------- 212 (343)
T ss_dssp -SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECC----------------------------
T ss_pred -CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCc----------------------------
Confidence 27899999998421 26799999999999999654444455566
Q ss_pred CCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 247 PEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
...|++++|. |+|++|++|+.||.|++||+.
T Consensus 213 --~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 213 --ESNVNHLSIS-PNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp --SSCEEEEEEC-TTSSEEEEEETTCEEEEEESS
T ss_pred --cccceEEEEC-CCCCEEEEEcCCCeEEEEECC
Confidence 7789999985 999999999999999999984
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-30 Score=291.60 Aligned_cols=204 Identities=18% Similarity=0.293 Sum_probs=175.6
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
..||...|++++|+|++++||+|+.||.|+||+....+ ......|..+|.+++|+|++.+|++++.|+.|++||+.+++
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence 35999999999999999999999999999999995444 44677899999999999999999999999999999999998
Q ss_pred eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 110 LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 110 ~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
.+..+ .|...|++++|+|+++++++|+.||.|++|++.. ++.. ..+..|. .+|.++.|+|
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~---~~~~~~~------------~~v~~~~~~~-- 159 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCL---KTLPAHS------------DPVSAVHFNR-- 159 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CCEE---EEECCCS------------SCEEEEEECT--
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CEEE---EEecCCC------------CcEEEEEEcC--
Confidence 88776 5788999999999999999999999999999864 3333 2355554 7899999988
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
++.+|++++.||.|++||+.+++.+..... .+...+++++|. |++++|+++
T Consensus 160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------------------------~~~~~~~~~~~~-~~~~~l~~~ 210 (312)
T 4ery_A 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLID----------------------------DDNPPVSFVKFS-PNGKYILAA 210 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECC----------------------------SSCCCEEEEEEC-TTSSEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEEec----------------------------cCCCceEEEEEC-CCCCEEEEE
Confidence 688899999999999999999876544311 015578899975 999999999
Q ss_pred EccCcEEEEecCCC
Q 001279 269 YIDGDILLWNTSTT 282 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1108)
+.||.|++||+.++
T Consensus 211 ~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 211 TLDNTLKLWDYSKG 224 (312)
T ss_dssp ETTTEEEEEETTTT
T ss_pred cCCCeEEEEECCCC
Confidence 99999999998643
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.5e-31 Score=300.09 Aligned_cols=324 Identities=15% Similarity=0.153 Sum_probs=254.0
Q ss_pred CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-eeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001279 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l 153 (1108)
|..+|.+++|+|||.+++.+..++.+.+|+.... ..+....|...|++++|+|+++++++++ ||.|++|+++......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 4568999999999999998888777777765544 4556668999999999999999999999 9999999987532211
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE---EEEeCCCcccccccccCC
Q 001279 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDS 230 (1108)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~---~~~~~~~~~~~~~~~~~~ 230 (1108)
....+....|. ..|.+++|+| ++.+|++++.||.|++||+.+++. ....+|
T Consensus 87 ~~~~~~~~~~~------------~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------------ 140 (337)
T 1gxr_A 87 PVSQLDCLNRD------------NYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS------------ 140 (337)
T ss_dssp CSEEEECSCTT------------SBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECS------------
T ss_pred eeecccccCCC------------CcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccC------------
Confidence 11011111333 7799999998 688899999999999999998763 223333
Q ss_pred CCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccE
Q 001279 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 310 (1108)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i 310 (1108)
...|++++|. |++.+|++++.||.|++||+.++.. +
T Consensus 141 ------------------~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~-----------~-------------- 176 (337)
T 1gxr_A 141 ------------------APACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTL-----------V-------------- 176 (337)
T ss_dssp ------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE-----------E--------------
T ss_pred ------------------CCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCce-----------e--------------
Confidence 6789999986 9999999999999999999864310 0
Q ss_pred EEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcce
Q 001279 311 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 390 (1108)
Q Consensus 311 ~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~ 390 (1108)
..+ .+
T Consensus 177 ~~~-------------------~~-------------------------------------------------------- 181 (337)
T 1gxr_A 177 RQF-------------------QG-------------------------------------------------------- 181 (337)
T ss_dssp EEE-------------------CC--------------------------------------------------------
T ss_pred eee-------------------ec--------------------------------------------------------
Confidence 000 00
Q ss_pred EEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCc
Q 001279 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1108)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1108)
|...+
T Consensus 182 ------------------------------------------~~~~i--------------------------------- 186 (337)
T 1gxr_A 182 ------------------------------------------HTDGA--------------------------------- 186 (337)
T ss_dssp ------------------------------------------CSSCE---------------------------------
T ss_pred ------------------------------------------ccCce---------------------------------
Confidence 00000
Q ss_pred cCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCe
Q 001279 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS 550 (1108)
Q Consensus 471 ~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~ 550 (1108)
..++++|+++.+++++.||.|++||+..+.... ...|...|.+++|+|++++
T Consensus 187 ----------------~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------------~~~~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 187 ----------------SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ------------QHDFTSQIFSLGYCPTGEW 238 (337)
T ss_dssp ----------------EEEEECTTSSEEEEEETTSEEEEEETTTTEEEE------------EEECSSCEEEEEECTTSSE
T ss_pred ----------------EEEEECCCCCEEEEEecCCcEEEEECCCCceEe------------eecCCCceEEEEECCCCCE
Confidence 111455677799999999999999998876441 1235678999999999999
Q ss_pred EEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001279 551 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 630 (1108)
Q Consensus 551 Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vw 630 (1108)
|++++.+|.|++|++.... ...+..|...|++++|+|++++|++|+.||.|++|
T Consensus 239 l~~~~~~~~i~~~~~~~~~--------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPD--------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp EEEEETTSCEEEEETTSSC--------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEcCCCcEEEEECCCCC--------------------------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence 9999999999999998751 24567899999999999999999999999999999
Q ss_pred EccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 631 DMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 631 d~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
|+.+++.+... .|..+|.++.|+ |++.+|++++.||.|++||.
T Consensus 293 ~~~~~~~~~~~----~~~~~v~~~~~s----------------------~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 293 RTPYGASIFQS----KESSSVLSCDIS----------------------VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEEE----ECSSCEEEEEEC----------------------TTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCeEEEEe----cCCCcEEEEEEC----------------------CCCCEEEEecCCCeEEEEEE
Confidence 99998877432 388999999999 56889999999999999985
No 43
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-31 Score=309.87 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=169.1
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~ 108 (1108)
...||.+.|.+++|+|++++||+|+.||.|+|||....+ ...+..|...|.+++|+|++.+|++++.|+.|++||+.+.
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 346999999999999999999999999999999996554 4467789999999999999999999999999999999764
Q ss_pred e-------eee-eecCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 109 S-------LAC-CLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 109 ~-------~~~-~~~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
. ... ...|.+.|.++.|.|++ .+|++|+.|++|++|++.. +..... +... .+..+...|
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~--~~~~~~---~~~~-------~~~~h~~~v 208 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT--GQRISI---FGSE-------FPSGHTADV 208 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT--CCEEEE---ECCC-------SSSSCCSCE
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC--CcEEEE---eecc-------cCCCCccCe
Confidence 2 122 23678889999999974 5799999999999999865 333221 2100 112233789
Q ss_pred EEEecccCCCCCEEEEEECCCeEEEEEccCC-eE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEe
Q 001279 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEA-QI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1108)
.++.|+|. ++..|++|+.||.|++||++.. +. ..+.+| ...|++++|
T Consensus 209 ~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h------------------------------~~~v~~v~~ 257 (380)
T 3iz6_a 209 LSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGH------------------------------EGDINSVKF 257 (380)
T ss_dssp EEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCC------------------------------SSCCCEEEE
T ss_pred EEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCc------------------------------CCCeEEEEE
Confidence 99999875 5778999999999999999743 33 345556 788999998
Q ss_pred ecCCCCEEEEEEccCcEEEEecCCC
Q 001279 258 ASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
. |+|.+|++|+.||+|++||+.++
T Consensus 258 ~-p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 258 F-PDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp C-TTSSEEEEECSSSCEEEEETTTT
T ss_pred e-cCCCeEEEEcCCCeEEEEECCCC
Confidence 6 99999999999999999999754
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.3e-31 Score=305.33 Aligned_cols=213 Identities=15% Similarity=0.256 Sum_probs=168.3
Q ss_pred eeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCC------------------CCEEEEEEeeC
Q 001279 27 RIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQ------------------LPYKNLEFLQN 87 (1108)
Q Consensus 27 ~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~------------------~~V~~l~fs~d 87 (1108)
.+....+|.+.|.|++|+|++++||+|+ ++.|+||+....+.+ .+..|. ..|++++|+|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred eeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 3344568999999999999999999987 789999998655443 333322 24999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1108)
+.+|++++.|+.|+|||+.+++.+..+ .|...|++++|+|++++|++|+.|++|++|++.. +..... +. +.
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~~~~~~---~~-~~-- 206 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQCSLT---LS-IE-- 206 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEE---EE-CS--
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--CeeEEE---EE-cC--
Confidence 999999999999999999999888776 6889999999999999999999999999999764 343321 22 11
Q ss_pred cccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCC
Q 001279 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1108)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1108)
..+.+++|+|. ++.+|++++.||.|++||+.+++.+........ ...
T Consensus 207 ----------~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~----------------------~~~ 253 (393)
T 1erj_A 207 ----------DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENE----------------------SGT 253 (393)
T ss_dssp ----------SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC----------------------------C
T ss_pred ----------CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeeccccc----------------------CCC
Confidence 56999999985 678899999999999999999877654321000 000
Q ss_pred CCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 247 PEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.+...|++++|. |+|++|++|+.||.|++||+.+.
T Consensus 254 ~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 254 GHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC---
T ss_pred CCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECCCC
Confidence 126789999985 99999999999999999998643
No 45
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-30 Score=288.96 Aligned_cols=202 Identities=13% Similarity=0.187 Sum_probs=161.7
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc--ceE-Ee-CC-CCCCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGL-LI-SP-SQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~--~~~-~~-~~-h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd 104 (1108)
...||...|.+++|+|+ +||+|+.||.|+||++... ... .. .. |..+|.+++|+|++.+|++++.|++|+|||
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 34589999999999988 9999999999999999653 222 22 34 999999999999999999999999999999
Q ss_pred cCC-------Ceeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCC--eeeeeceeecccccccccCCCCC
Q 001279 105 LES-------RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG--KLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 105 ~~s-------~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~--~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
+.. .+.+..+ .|...|++++|+|++++|++|+.|++|+||+++.... ... ..+.+|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~---~~~~~h~---------- 153 (330)
T 2hes_X 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI---SVLQEHS---------- 153 (330)
T ss_dssp C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE---EEECCCS----------
T ss_pred cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE---EEeccCC----------
Confidence 853 2344444 6889999999999999999999999999999853221 222 2355555
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC--eE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCc
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1108)
..|.++.|+| ++.+|++++.|++|++||+.++ +. ..+.+| ...
T Consensus 154 --~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h------------------------------~~~ 199 (330)
T 2hes_X 154 --QDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGH------------------------------EGT 199 (330)
T ss_dssp --SCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSC
T ss_pred --CceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC------------------------------CCc
Confidence 7899999999 6888999999999999999876 33 334455 778
Q ss_pred eeEEEeecCC--CCEEEEEEccCcEEEEecCC
Q 001279 252 ISALCWASSS--GSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 252 Vtsl~w~spd--g~~l~sg~~DG~I~lWd~~~ 281 (1108)
|.+++|. |+ +..|++|+.||+|++||+..
T Consensus 200 v~~~~~~-~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 200 VWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEEEEC-CSSSSCEEEEEETTSCEEEEEEEE
T ss_pred EEEEEec-CCCCeeEEEEEeCCCeEEEEEecC
Confidence 9999985 88 77899999999999999853
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-30 Score=289.49 Aligned_cols=310 Identities=17% Similarity=0.254 Sum_probs=219.3
Q ss_pred Ceeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceee-cc-cccccccCCCCCCCCCeEEEec
Q 001279 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNI-SA-DALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 108 ~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i-~~-~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
.+++..+ .|.+.|++++|+++ +|++|+.||.|++|++......+... + .. |. ..|.+++|
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~---~~~~~h~------------~~v~~v~~ 66 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDV---LDETAHK------------KAIRSVAW 66 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEE---ECTTCCC------------SCEEEEEE
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEE---EecCCcc------------CCEEEEEE
Confidence 3444444 68899999999987 99999999999999987543333321 2 22 44 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCC-------eEE-EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEA-------QII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
+| ++.+|++++.|++|+|||+... +.. .+.+| ...|++++
T Consensus 67 sp--~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h------------------------------~~~V~~v~ 114 (330)
T 2hes_X 67 RP--HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH------------------------------ENEVKGVA 114 (330)
T ss_dssp CT--TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----------------------------------CEEEEE
T ss_pred CC--CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC------------------------------CCcEEEEE
Confidence 99 6888999999999999998542 222 23344 77899999
Q ss_pred eecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCC
Q 001279 257 WASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDE 336 (1108)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~ 336 (1108)
|. |+|++|++|+.||+|++||+...... . ..+.
T Consensus 115 ~s-p~g~~las~s~D~~v~iwd~~~~~~~-----------~----------~~~~------------------------- 147 (330)
T 2hes_X 115 WS-NDGYYLATCSRDKSVWIWETDESGEE-----------Y----------ECIS------------------------- 147 (330)
T ss_dssp EC-TTSCEEEEEETTSCEEEEECCTTCCC-----------C----------EEEE-------------------------
T ss_pred EC-CCCCEEEEEeCCCEEEEEeccCCCCC-----------e----------EEEE-------------------------
Confidence 85 99999999999999999998432000 0 0000
Q ss_pred CCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccC
Q 001279 337 IGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQE 416 (1108)
Q Consensus 337 ~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~ 416 (1108)
.+.
T Consensus 148 --------~~~--------------------------------------------------------------------- 150 (330)
T 2hes_X 148 --------VLQ--------------------------------------------------------------------- 150 (330)
T ss_dssp --------EEC---------------------------------------------------------------------
T ss_pred --------Eec---------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCc
Q 001279 417 KKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDR 496 (1108)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~ 496 (1108)
+|...+..++++|+++
T Consensus 151 ----------------------------------------------------------------~h~~~v~~v~~~p~~~ 166 (330)
T 2hes_X 151 ----------------------------------------------------------------EHSQDVKHVIWHPSEA 166 (330)
T ss_dssp ----------------------------------------------------------------CCSSCEEEEEECSSSS
T ss_pred ----------------------------------------------------------------cCCCceEEEEECCCCC
Confidence 0000111225667778
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeC--CCeEEEEecCceEEEEEecCCCCCccc
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI--NSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d--~~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1108)
+|++|+.||+|++||...+....+ ..+.+|...|++++|+|+ +.+|++|+.||+|+||++.......
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~-- 235 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECV---------AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD-- 235 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEE---------EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS--
T ss_pred EEEEEcCCCeEEEEECCCCCeeEE---------EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc--
Confidence 999999999999999876532211 236789999999999998 6789999999999999997642110
Q ss_pred cccccCccceeecccCCcceEEEEEee-cCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCC-ceE
Q 001279 575 LFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS-PII 652 (1108)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~-~V~ 652 (1108)
...+.+...+.. |...|++++|++++ +||+|+.||+|+|||..++........+.+|.. .|.
T Consensus 236 ---------------~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~ 299 (330)
T 2hes_X 236 ---------------QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEIN 299 (330)
T ss_dssp ---------------CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEE
T ss_pred ---------------cceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEE
Confidence 011123444444 89999999999766 899999999999999988753222223456887 899
Q ss_pred EEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 653 ~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
+++|++. .++.+|++|+.||+|++||.+.
T Consensus 300 ~v~~~~~--------------------~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 300 VVKWLEL--------------------NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEC-------------------------CCEEEEETTSEEEEEEC--
T ss_pred EEEEecC--------------------CCceEEEEecCCCcEEEEEecc
Confidence 9999942 1467899999999999999764
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-30 Score=294.61 Aligned_cols=302 Identities=16% Similarity=0.177 Sum_probs=219.0
Q ss_pred EEeCCCCCCEEEEEE-----ee-CCCEEEEEeCCCcEEEEEcCCCe-------eeeee-cCCCCeeEEEEecCCCEEEEE
Q 001279 70 LLISPSQLPYKNLEF-----LQ-NQGFLISITNDNEIQVWSLESRS-------LACCL-KWESNITAFSVISGSHFMYIG 135 (1108)
Q Consensus 70 ~~~~~h~~~V~~l~f-----s~-d~~~L~S~s~d~~I~vWd~~s~~-------~~~~~-~~~~~Itsl~~~~~~~~l~vg 135 (1108)
..+.+|..+|++++| ++ ++.+|++++.|++|++||+.+.+ ....+ .|...|++++|+|++.++++|
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 94 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS 94 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence 356789999999999 66 88999999999999999997542 33333 688899999999999999999
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE
Q 001279 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1108)
Q Consensus 136 ~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~ 215 (1108)
+.||+|++|++.. ++... .+.+|. ..|.+++|+| ++.+|++++.|+.|++||+........
T Consensus 95 s~D~~v~lwd~~~--~~~~~---~~~~h~------------~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~~~~~ 155 (343)
T 2xzm_R 95 SWDKTLRLWDLRT--GTTYK---RFVGHQ------------SEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSS 155 (343)
T ss_dssp ETTSEEEEEETTS--SCEEE---EEECCC------------SCEEEEEECS--STTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred cCCCcEEEEECCC--CcEEE---EEcCCC------------CcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCceeee
Confidence 9999999999865 34432 355665 7899999999 788899999999999999985544332
Q ss_pred eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC----------CEEEEEEccCcEEEEecCCCCCC
Q 001279 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG----------SILAVGYIDGDILLWNTSTTAST 285 (1108)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg----------~~l~sg~~DG~I~lWd~~~~~~~ 285 (1108)
... ..+...|++++|. |++ .+|++++.||.|++||....
T Consensus 156 ~~~---------------------------~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--- 204 (343)
T 2xzm_R 156 AEK---------------------------ENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--- 204 (343)
T ss_dssp CTT---------------------------TSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---
T ss_pred ecc---------------------------cCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcCCCc---
Confidence 210 0116679999975 776 78999999999999994210
Q ss_pred CCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeec
Q 001279 286 KGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI 365 (1108)
Q Consensus 286 ~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l 365 (1108)
.. ..+ .+
T Consensus 205 ----------~~-------------~~~-------------------~~------------------------------- 211 (343)
T 2xzm_R 205 ----------IR-------------YTF-------------------KA------------------------------- 211 (343)
T ss_dssp ----------EE-------------EEE-------------------EC-------------------------------
T ss_pred ----------ee-------------EEE-------------------cC-------------------------------
Confidence 00 000 00
Q ss_pred CCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEec
Q 001279 366 TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLL 445 (1108)
Q Consensus 366 ~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~ 445 (1108)
|..
T Consensus 212 -------------------------------------------------------------------h~~---------- 214 (343)
T 2xzm_R 212 -------------------------------------------------------------------HES---------- 214 (343)
T ss_dssp -------------------------------------------------------------------CSS----------
T ss_pred -------------------------------------------------------------------ccc----------
Confidence 000
Q ss_pred cCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCc-eeeEeeec
Q 001279 446 PFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV-FKLICALD 524 (1108)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~-l~~~~~l~ 524 (1108)
.+..++++|++++|++|+.||+|+|||+.... ..
T Consensus 215 ---------------------------------------~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~------ 249 (343)
T 2xzm_R 215 ---------------------------------------NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ------ 249 (343)
T ss_dssp ---------------------------------------CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS------
T ss_pred ---------------------------------------cceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc------
Confidence 01122567888899999999999999984332 21
Q ss_pred cccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCc
Q 001279 525 AEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS 604 (1108)
Q Consensus 525 ~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~ 604 (1108)
. ...+...|++++|+|++.+|+++ .|+.|++|++..........+.... +. ......+|..
T Consensus 250 -----~-~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~ 310 (343)
T 2xzm_R 250 -----R-EFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEP------IT------KAEGQKGKNP 310 (343)
T ss_dssp -----E-EEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCS------GG------GBTTBCCSCC
T ss_pred -----e-eecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCc------ch------hhhhhcCCCC
Confidence 1 11234579999999999888755 5788999998765321100000000 00 0001136888
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEccCc
Q 001279 605 PVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 605 ~Vtslafspdg~~LavGs~dG~V~vwd~~~~ 635 (1108)
.|++++|+|++++|++|+.||+|++||+.++
T Consensus 311 ~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9999999999999999999999999998764
No 48
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=6.1e-30 Score=287.69 Aligned_cols=289 Identities=16% Similarity=0.252 Sum_probs=229.8
Q ss_pred eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
...+.+|..+|++++|+|++.+|++++.|+.|++||+.+++....+ .|...|++++|+|++++|++|+.||.|++|++.
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 95 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence 3466789999999999999999999999999999999998887776 678899999999999999999999999999986
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-eCCCccccccc
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDG 226 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~ 226 (1108)
. ++... .+.+|. ..|.++.|+| ++.+|++++.||.|++||+.+++.+.. ..|
T Consensus 96 ~--~~~~~---~~~~~~------------~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------- 148 (312)
T 4ery_A 96 S--GKCLK---TLKGHS------------NYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-------- 148 (312)
T ss_dssp T--CCEEE---EEECCS------------SCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCC--------
T ss_pred C--CcEEE---EEcCCC------------CCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCC--------
Confidence 4 34432 355555 7899999998 688899999999999999999876544 334
Q ss_pred ccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccC
Q 001279 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1108)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~ 306 (1108)
...|++++|. |++.+|++++.||.|++||+.++.. +.
T Consensus 149 ----------------------~~~v~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~-----------~~--------- 185 (312)
T 4ery_A 149 ----------------------SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC-----------LK--------- 185 (312)
T ss_dssp ----------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCE-----------EE---------
T ss_pred ----------------------CCcEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCce-----------ee---------
Confidence 6789999985 9999999999999999999864310 00
Q ss_pred CccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCC
Q 001279 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1108)
Q Consensus 307 ~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~ 386 (1108)
.+ . ..
T Consensus 186 -----~~---------~---------~~---------------------------------------------------- 190 (312)
T 4ery_A 186 -----TL---------I---------DD---------------------------------------------------- 190 (312)
T ss_dssp -----EE---------C---------CS----------------------------------------------------
T ss_pred -----EE---------e---------cc----------------------------------------------------
Confidence 00 0 00
Q ss_pred CcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccC
Q 001279 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1108)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1108)
+..++
T Consensus 191 ----------------------------------------------~~~~~----------------------------- 195 (312)
T 4ery_A 191 ----------------------------------------------DNPPV----------------------------- 195 (312)
T ss_dssp ----------------------------------------------SCCCE-----------------------------
T ss_pred ----------------------------------------------CCCce-----------------------------
Confidence 00000
Q ss_pred CCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeE--EEEE
Q 001279 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVS--TLSF 544 (1108)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt--~laf 544 (1108)
..++++|+++++++|+.||.|++||+..+.+.. .+.+|...+. ...|
T Consensus 196 --------------------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 196 --------------------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK-----------TYTGHKNEKYCIFANF 244 (312)
T ss_dssp --------------------EEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-----------EECSSCCSSSCCCEEE
T ss_pred --------------------EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-----------EEEecCCceEEEEEEE
Confidence 112466777899999999999999999877542 2334443322 2234
Q ss_pred E-eCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEe-
Q 001279 545 C-FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF- 622 (1108)
Q Consensus 545 s-~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs- 622 (1108)
+ +++.+|++|+.||.|++|++... .++..+.+|...|++++|+|++++|++++
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTK-------------------------EIVQKLQGHTDVVISTACHPTENIIASAAL 299 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTC-------------------------CEEEEECCCSSCEEEEEECSSSSEEEEEEC
T ss_pred EeCCCcEEEEECCCCEEEEEECCCc-------------------------hhhhhhhccCCcEEEEeecCcCCceEEEEc
Confidence 4 67889999999999999998765 25677889999999999999999999987
Q ss_pred -CCCeEEEEEcc
Q 001279 623 -ECGRVAVLDMN 633 (1108)
Q Consensus 623 -~dG~V~vwd~~ 633 (1108)
.||+|++|+..
T Consensus 300 ~~d~~i~~W~~d 311 (312)
T 4ery_A 300 ENDKTIKLWKSD 311 (312)
T ss_dssp TTTCCEEEEECC
T ss_pred cCCccEEEecCC
Confidence 69999999864
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=8.8e-30 Score=289.28 Aligned_cols=214 Identities=15% Similarity=0.179 Sum_probs=175.5
Q ss_pred cccccceeeeeeCCCCCceEEEEcCC-CCEEEEEECCCcEEEEecCCcc------eEEeCCCCCCEEEEEEeeCCCEEEE
Q 001279 21 AADLNLRIAVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIE------GLLISPSQLPYKNLEFLQNQGFLIS 93 (1108)
Q Consensus 21 ~~~~~~~~~~~~G~~~~is~la~sp~-~~~LA~Gs~dG~I~iw~~~~~~------~~~~~~h~~~V~~l~fs~d~~~L~S 93 (1108)
.+++.++-+ ..||.+.|++|+|+|+ +++||+|+.||.|+||++...+ ...+.+|..+|.+++|+|++.+|++
T Consensus 25 ~~~~~l~~t-L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 25 TEQMTLRGT-LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp -CEEEEEEE-ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCceEEEEE-ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 334444433 3599999999999998 6899999999999999985432 2356789999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001279 94 ITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1108)
Q Consensus 94 ~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1108)
++.|+.|++|+.......... .+...+..+.+++.++++++|+.|+.+++|+.... ... .....+|.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~--~~~--~~~~~~~~-------- 171 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV--CKY--TVQDESHS-------- 171 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EEE--EECSSSCS--------
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC--ceE--EEEecccc--------
Confidence 999999999999998777665 56678899999999999999999999999986532 111 12233343
Q ss_pred CCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCc
Q 001279 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1108)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1108)
..|..+.|++......+++++.|+.|++||+.+++.... .+| ...
T Consensus 172 ----~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h------------------------------~~~ 217 (340)
T 4aow_A 172 ----EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH------------------------------TGY 217 (340)
T ss_dssp ----SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSC
T ss_pred ----CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC------------------------------CCc
Confidence 779999998876677788999999999999999987554 445 778
Q ss_pred eeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 252 ISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
|++++|. |+|++|++|+.||.|++||+.+.
T Consensus 218 v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 218 LNTVTVS-PDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp EEEEEEC-TTSSEEEEEETTCEEEEEETTTT
T ss_pred EEEEEEC-CCCCEEEEEeCCCeEEEEEeccC
Confidence 9999985 99999999999999999998643
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.9e-32 Score=322.82 Aligned_cols=361 Identities=12% Similarity=0.096 Sum_probs=235.2
Q ss_pred eeeeeCCCCCceEEEEcCCC---------CEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC
Q 001279 28 IAVHYGIPATASILAFDHIQ---------RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1108)
Q Consensus 28 ~~~~~G~~~~is~la~sp~~---------~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~ 98 (1108)
....+-+++.|.+++|+|++ ++||+|+.++.. -..+|++..|++++.|+
T Consensus 126 ~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~----------------------~~~~~~~~~laS~s~D~ 183 (524)
T 2j04_B 126 RGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD----------------------EPLNEHLEMFDKEKHSS 183 (524)
T ss_dssp CEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------CE
T ss_pred ceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC----------------------CccchhhhhhccCCCCc
Confidence 33445568899999999987 899999977520 01378889999999999
Q ss_pred cEEEEEcCCCeee----eee-cCCCCeeEEEEecC------CCEEEEEeCCCcEEEEEEecCCCe---e---eeeceeec
Q 001279 99 EIQVWSLESRSLA----CCL-KWESNITAFSVISG------SHFMYIGDENGLMSVIKYDADEGK---L---FQLPYNIS 161 (1108)
Q Consensus 99 ~I~vWd~~s~~~~----~~~-~~~~~Itsl~~~~~------~~~l~vg~~dg~V~vw~~d~~~~~---l---~~~~~~i~ 161 (1108)
+|+|||+.+++.. ..+ .+.+.|++++|+|+ +.+|++|+.||+|+||++...... . ......+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887642 223 45688999999996 579999999999999998753211 0 00001233
Q ss_pred ccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe-E-EEEeCCCcccccccccCCCCCCCCCcc
Q 001279 162 ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-I-IFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1108)
Q Consensus 162 ~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1108)
+|. ..|++++|+| ++ +|++|+.||+|++||+.++. . ..+.+|
T Consensus 264 ~h~------------~~v~sv~~s~--~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H--------------------- 307 (524)
T 2j04_B 264 LAD------------SLITTFDFLS--PT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVH--------------------- 307 (524)
T ss_dssp CTT------------TCEEEEEESS--SS-EEEEEETTSEEEEEETTBCSSCSEEEECS---------------------
T ss_pred cCC------------CCEEEEEecC--CC-eEEEEeCCCEEEEEECCCCCCceEEeecc---------------------
Confidence 443 7899999987 33 69999999999999998763 2 234556
Q ss_pred cCcCCCCCCCCceeEEE-eecCCC-CEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeec
Q 001279 240 EGISEHQPEEKEISALC-WASSSG-SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWST 317 (1108)
Q Consensus 240 ~~~~~~~~~~~~Vtsl~-w~spdg-~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~ 317 (1108)
...|++++ .++++| .+|++|+.||+|++||+.+..... .+
T Consensus 308 ---------~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~-------------------------~~---- 349 (524)
T 2j04_B 308 ---------DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK-------------------------TT---- 349 (524)
T ss_dssp ---------SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC-------------------------EE----
T ss_pred ---------cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc-------------------------cc----
Confidence 78899994 346888 899999999999999986331000 00
Q ss_pred ccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCC
Q 001279 318 NKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSP 397 (1108)
Q Consensus 318 ~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~ 397 (1108)
.+...
T Consensus 350 --------------~~~~~------------------------------------------------------------- 354 (524)
T 2j04_B 350 --------------VSRFR------------------------------------------------------------- 354 (524)
T ss_dssp --------------EEECS-------------------------------------------------------------
T ss_pred --------------ccccc-------------------------------------------------------------
Confidence 00000
Q ss_pred CeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCccccc
Q 001279 398 GQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWP 477 (1108)
Q Consensus 398 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp 477 (1108)
T Consensus 355 -------------------------------------------------------------------------------- 354 (524)
T 2j04_B 355 -------------------------------------------------------------------------------- 354 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC
Q 001279 478 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 557 (1108)
Q Consensus 478 ~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d 557 (1108)
+ ..+..++++|+++.+++++.|++|++||+..+.+. ..+.+|...|++|+|+|++++|++|+.|
T Consensus 355 --~---~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~-----------~~l~gH~~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 355 --G---SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV-----------HPLVSRETTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp --C---CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC-----------EEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred --c---CcccceEeCCCcCeEEEeCCCCcEEEEECcccccc-----------eeeecCCCceEEEEeCCCCCeEEEEECC
Confidence 0 00112256777788999999999999999887654 2366899999999999999999999999
Q ss_pred ceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceE
Q 001279 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV 637 (1108)
Q Consensus 558 G~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~ 637 (1108)
|+|+||+........ +.. ..-..+...|++++|+|+++.+. ..++..+..|+..+. .
T Consensus 419 gtv~lwd~~~~~~~~--------------------~~~-~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~-~ 475 (524)
T 2j04_B 419 GSLIITNAARRLLHG--------------------IKN-SSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDV-S 475 (524)
T ss_dssp TEEECCBSCSSTTTC--------------------C-------CCCCEEEECBCCSSSCEEE-ECCCCCCCC--------
T ss_pred CEEEEEechHhhccc--------------------ccc-CccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCc-c
Confidence 999999976531100 000 00001233588999999998553 333333333332233 3
Q ss_pred EEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 638 LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 638 ~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
+ ..+.+|..+|.+++|+|... .+.+|++|+.||.|+||+..
T Consensus 476 ~---~~l~gh~~~V~~Vafsp~~~-------------------~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 476 K---AKIDAHGINITCTKWNETSA-------------------GGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ---------CCCSCCCEEECCSTT-------------------TTTEEEEECTTSEEEEEECS
T ss_pred e---eeecCCCceEEEEECCCCCC-------------------ccHHHHhhccCceEEEEEcc
Confidence 3 35678999999999995422 25689999999999999964
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=307.36 Aligned_cols=201 Identities=13% Similarity=0.220 Sum_probs=153.8
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCcceEEe-CCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEEcCC---Ce---eeee
Q 001279 42 AFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES---RS---LACC 113 (1108)
Q Consensus 42 a~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd~~s---~~---~~~~ 113 (1108)
.|+|+++.++++. .|+..+..+..+ .+|.++|++++|+| ++.+|++++.|++|+|||+.+ +. ....
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred hcCCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 4788888888765 388777666666 78899999999999 999999999999999999977 43 3344
Q ss_pred ecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC-CCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD-EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 114 ~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
+.|...|++++|+|++++|++|+.||.|++|+++.. .+..... ...+........+......+.++.+.+..++.+
T Consensus 108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF---LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE---EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec---cccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 478899999999999999999999999999999621 1222221 111111000000111336788888554447888
Q ss_pred EEEEECCCeEEEEEccCCeEEEEe-C--CCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 193 VLIAYENALVILWDVSEAQIIFVG-G--GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 193 ll~~~~dg~V~lWdl~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
|++++.||.|++||+.+++.+..+ + | ...|++++|. |++.+|++|+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h------------------------------~~~v~~~~~s-~~~~~l~s~~ 233 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPR------------------------------HGAVSSICID-EECCVLILGT 233 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGG------------------------------GCCEEEEEEC-TTSCEEEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCC------------------------------CCceEEEEEC-CCCCEEEEEc
Confidence 999999999999999998775543 3 3 6789999985 9999999999
Q ss_pred ccCcEEEEecCCC
Q 001279 270 IDGDILLWNTSTT 282 (1108)
Q Consensus 270 ~DG~I~lWd~~~~ 282 (1108)
.||.|++||+.++
T Consensus 234 ~dg~i~iwd~~~~ 246 (437)
T 3gre_A 234 TRGIIDIWDIRFN 246 (437)
T ss_dssp TTSCEEEEETTTT
T ss_pred CCCeEEEEEcCCc
Confidence 9999999999643
No 52
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=6e-29 Score=282.41 Aligned_cols=312 Identities=15% Similarity=0.186 Sum_probs=225.8
Q ss_pred EEEEEcCCC--eeeeee-cCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001279 100 IQVWSLESR--SLACCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1108)
Q Consensus 100 I~vWd~~s~--~~~~~~-~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1108)
+.++...+. ++..++ +|.+.|++++|+|+ +++|++|+.||+|+||++.............+.+|.
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~----------- 86 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS----------- 86 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-----------
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-----------
Confidence 444444333 344445 79999999999997 589999999999999999764332221113355555
Q ss_pred CCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEE
Q 001279 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1108)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1108)
..|.++.|+| ++.+|++++.|+.|++|+............ ....+...
T Consensus 87 -~~V~~~~~s~--dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~ 134 (340)
T 4aow_A 87 -HFVSDVVISS--DGQFALSGSWDGTLRLWDLTTGTTTRRFVG-----------------------------HTKDVLSV 134 (340)
T ss_dssp -SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----------------------------CSSCEEEE
T ss_pred -CCEEEEEECC--CCCEEEEEcccccceEEeecccceeeeecC-----------------------------CCCceeEE
Confidence 7899999988 788999999999999999998876544322 04556667
Q ss_pred EeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCC
Q 001279 256 CWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 335 (1108)
Q Consensus 256 ~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~ 335 (1108)
++. +++..|++++.||.+++||...... ..... . +
T Consensus 135 ~~~-~~~~~l~s~s~d~~~~~~d~~~~~~------------~~~~~---------------------~----------~- 169 (340)
T 4aow_A 135 AFS-SDNRQIVSGSRDKTIKLWNTLGVCK------------YTVQD---------------------E----------S- 169 (340)
T ss_dssp EEC-TTSSCEEEEETTSCEEEECTTSCEE------------EEECS---------------------S----------S-
T ss_pred EEe-ecCccceeecCCCeEEEEEeCCCce------------EEEEe---------------------c----------c-
Confidence 764 9999999999999999999753200 00000 0 0
Q ss_pred CCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeecccc
Q 001279 336 EIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ 415 (1108)
Q Consensus 336 ~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~ 415 (1108)
T Consensus 170 -------------------------------------------------------------------------------- 169 (340)
T 4aow_A 170 -------------------------------------------------------------------------------- 169 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCC
Q 001279 416 EKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD 495 (1108)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~ 495 (1108)
+...+.+..+ ......
T Consensus 170 -----------------~~~~v~~~~~-----------------------------------------------~~~~~~ 185 (340)
T 4aow_A 170 -----------------HSEWVSCVRF-----------------------------------------------SPNSSN 185 (340)
T ss_dssp -----------------CSSCEEEEEE-----------------------------------------------CSCSSS
T ss_pred -----------------ccCcccceEE-----------------------------------------------ccCCCC
Confidence 0000111111 011122
Q ss_pred cEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCcccc
Q 001279 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1108)
Q Consensus 496 ~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~ 575 (1108)
.++++++.|++|++||+..+.+. ..+.+|..+|++|+|+|++++|++|+.||.|+||++...
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~-----------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~------- 247 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLK-----------TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG------- 247 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-------
T ss_pred cEEEEEcCCCEEEEEECCCCcee-----------eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-------
Confidence 37899999999999999988755 346789999999999999999999999999999998875
Q ss_pred ccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEee------cCCCCCC
Q 001279 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTD------DISGSSS 649 (1108)
Q Consensus 576 ~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~------~~~~h~~ 649 (1108)
.++..+ .+...|++++|+|++.++ +++.|+.|+|||++++..+.... ...+|..
T Consensus 248 ------------------~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~ 307 (340)
T 4aow_A 248 ------------------KHLYTL-DGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 307 (340)
T ss_dssp ------------------EEEEEE-ECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCC
T ss_pred ------------------ceeeee-cCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCC
Confidence 233434 355689999999998655 55568999999999987765432 2346899
Q ss_pred ceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcc
Q 001279 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1108)
.|.+++|+ |++.+|++|+.||.|+|||.++|.
T Consensus 308 ~v~~l~~s----------------------~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWS----------------------ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEC----------------------TTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEEC----------------------CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999 668899999999999999998874
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.6e-28 Score=291.01 Aligned_cols=316 Identities=17% Similarity=0.251 Sum_probs=246.5
Q ss_pred eeCCCCCc-eEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001279 31 HYGIPATA-SILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 31 ~~G~~~~i-s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~ 108 (1108)
..||...+ +|+ ++++++||+|+.||.|++|+....+. ....+|..+|.+++|+ +.+|++++.|++|++||+.++
T Consensus 114 l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 114 LKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp EECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT
T ss_pred ecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC
Confidence 45788765 554 45689999999999999999965554 4667899999999998 468999999999999999999
Q ss_pred eeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC
Q 001279 109 SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1108)
Q Consensus 109 ~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1108)
+.+..+ .|...|++++++ ++++++|+.||.|++|++.. ++.. ..+.+|. ..|.++.|
T Consensus 190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~--~~~~---~~~~~~~------------~~v~~~~~--- 247 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET--GQCL---HVLMGHV------------AAVRCVQY--- 247 (445)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS--CCEE---EEEECCS------------SCEEEEEE---
T ss_pred cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC--CcEE---EEEcCCc------------ccEEEEEE---
Confidence 888777 588899999995 67899999999999999875 3443 2255555 78999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE
Q 001279 188 SSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1108)
Q Consensus 188 ~~~~~ll~~~~dg~V~lWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1108)
++..+++++.||.|++||+.+++.+... +| ...|++++| ++.+++
T Consensus 248 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~---~~~~l~ 293 (445)
T 2ovr_B 248 -DGRRVVSGAYDFMVKVWDPETETCLHTLQGH------------------------------TNRVYSLQF---DGIHVV 293 (445)
T ss_dssp -CSSCEEEEETTSCEEEEEGGGTEEEEEECCC------------------------------SSCEEEEEE---CSSEEE
T ss_pred -CCCEEEEEcCCCEEEEEECCCCcEeEEecCC------------------------------CCceEEEEE---CCCEEE
Confidence 4667999999999999999998776543 34 678999996 689999
Q ss_pred EEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEE
Q 001279 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1108)
Q Consensus 267 sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl 346 (1108)
+|+.||.|++||+.++.. +. .+ .+
T Consensus 294 ~~~~d~~i~i~d~~~~~~-----------~~--------------~~-------------------~~------------ 317 (445)
T 2ovr_B 294 SGSLDTSIRVWDVETGNC-----------IH--------------TL-------------------TG------------ 317 (445)
T ss_dssp EEETTSCEEEEETTTCCE-----------EE--------------EE-------------------CC------------
T ss_pred EEeCCCeEEEEECCCCCE-----------EE--------------EE-------------------cC------------
Confidence 999999999999865410 00 00 00
Q ss_pred eccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccC
Q 001279 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1108)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1108)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCc
Q 001279 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS 506 (1108)
Q Consensus 427 ~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGt 506 (1108)
+...+. .+..+++++++|+.||.
T Consensus 318 ------~~~~v~---------------------------------------------------~~~~~~~~l~~~~~dg~ 340 (445)
T 2ovr_B 318 ------HQSLTS---------------------------------------------------GMELKDNILVSGNADST 340 (445)
T ss_dssp ------CCSCEE---------------------------------------------------EEEEETTEEEEEETTSC
T ss_pred ------CcccEE---------------------------------------------------EEEEeCCEEEEEeCCCe
Confidence 000000 01112348999999999
Q ss_pred EEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceee
Q 001279 507 VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1108)
Q Consensus 507 VriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1108)
|++||+..+.+...+ . ....|..+|++++|+ +++|++|+.||.|+||++....
T Consensus 341 i~vwd~~~~~~~~~~--~------~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~----------------- 393 (445)
T 2ovr_B 341 VKIWDIKTGQCLQTL--Q------GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE----------------- 393 (445)
T ss_dssp EEEEETTTCCEEEEE--C------STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-----------------
T ss_pred EEEEECCCCcEEEEE--c------cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc-----------------
Confidence 999999887654111 1 012488899999995 6899999999999999998752
Q ss_pred cccCCcceEEEEE-----eecCcCEEEEEEcCCCCEEEEEeCCCe----EEEEEccC
Q 001279 587 LPEGKISLCRAVF-----SLVNSPVRALQFTSSGAKLAVGFECGR----VAVLDMNL 634 (1108)
Q Consensus 587 ~~~~~g~~~~~~~-----~~h~~~Vtslafspdg~~LavGs~dG~----V~vwd~~~ 634 (1108)
++..+ ..|.+.|++++|+|++.++|+|+.||+ |.|||+..
T Consensus 394 --------~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 394 --------FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp --------EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred --------eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 23333 368899999999999999999999998 99999875
No 54
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-28 Score=280.68 Aligned_cols=222 Identities=12% Similarity=0.109 Sum_probs=180.1
Q ss_pred ccceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 001279 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1108)
Q Consensus 24 ~~~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1108)
-..+.....||...|++++|+|++++||+|+.||.|+||+....+. .....|..+|.+++|+|++.+|++++.|+.|++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3455566679999999999999999999999999999999865544 466779999999999999999999999999999
Q ss_pred EEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCC-----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001279 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDEN-----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1108)
Q Consensus 103 Wd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~d-----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1108)
||+.+++.+..+.+...|++++|+|+++++++++.+ |.|++|++.......... .......... .......
T Consensus 101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~ 176 (369)
T 3zwl_B 101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT--KVSEEPIHKI--ITHEGLD 176 (369)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE--EECSSCSEEE--ECCTTCC
T ss_pred EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec--ccccceeeec--cCCcCcc
Confidence 999999999988899999999999999999999999 999999998643221100 0000000000 0001113
Q ss_pred CeEEEecccCCCCCEEEEEECCCeEEEEEccC-CeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEE
Q 001279 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1108)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1108)
.+.+++|+| ++..|++++.||.|++||+.+ .+... +..| ...|+++
T Consensus 177 ~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------------------~~~v~~~ 224 (369)
T 3zwl_B 177 AATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH------------------------------EKSISDM 224 (369)
T ss_dssp CEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECC------------------------------SSCEEEE
T ss_pred ceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecC------------------------------CCceeEE
Confidence 799999998 688899999999999999998 55544 3444 7789999
Q ss_pred EeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 256 CWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 256 ~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+|. |++.+|++++.||.|++||+.+.
T Consensus 225 ~~~-~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 225 QFS-PDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEC-TTSSEEEEEETTSEEEEEETTTC
T ss_pred EEC-CCCCEEEEecCCceEEEEECCCC
Confidence 986 99999999999999999999754
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=4.8e-29 Score=287.10 Aligned_cols=164 Identities=10% Similarity=0.127 Sum_probs=138.1
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
+..|...|.+++|+|++++||+|+.||.|+||+.... .......|..+|.+++|+|++.+|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 3357889999999999999999999999999999776 4456668999999999999999999999999999999999
Q ss_pred Ceeeee---ecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 108 RSLACC---LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 108 ~~~~~~---~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
++.... ..+...|++++|+|+++++++|+.+|.|++|+++......... .....|. ..|.+++|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~~------------~~i~~~~~ 150 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIR------------STVLSLDW 150 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-EECTTCC------------SCEEEEEE
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee-eeecccC------------CCeeEEEE
Confidence 875443 4678899999999999999999999999999998754321110 1112333 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccC
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
+| ++.+|++++.||.|++||+..
T Consensus 151 ~~--~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 151 HP--NSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp CT--TSSEEEEEETTSCEEEEECCC
T ss_pred cC--CCCEEEEEcCCCCEEEEEccc
Confidence 98 688899999999999999864
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=5.2e-29 Score=288.82 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=171.3
Q ss_pred eeeCCCCCceEEEEcCCC-CEEEEEECCCcEEEEecCCcceEEe---CCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEE
Q 001279 30 VHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGLLI---SPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~-~~LA~Gs~dG~I~iw~~~~~~~~~~---~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd 104 (1108)
...||...|.+++|+|++ ++||+|+.||.|+||+....+.... .+|..+|.+++|+| ++.+|++++.|+.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 336899999999999999 9999999999999999975544422 36999999999999 779999999999999999
Q ss_pred cCCCeeeeeec---CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001279 105 LESRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 105 ~~s~~~~~~~~---~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
+.+........ +...|++++|+|+++++++|+.||.|++|++. +... ..+.+|. ..|.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~---~~~~~h~------------~~v~~ 209 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD---GHEI---FKEKLHK------------AKVTH 209 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT---SCEE---EEEECSS------------SCEEE
T ss_pred CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC---CCEE---EEeccCC------------CcEEE
Confidence 99765544443 34789999999999999999999999999984 3333 2355555 78999
Q ss_pred EecccCCCCC-EEEEEECCCeEEEEEccC----CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 182 VLPHPNSSGN-RVLIAYENALVILWDVSE----AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 182 v~f~P~~~~~-~ll~~~~dg~V~lWdl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
++|+| ++. +|++++.|+.|++||+.+ +..+...+| ...|++++
T Consensus 210 ~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------------------------------~~~v~~~~ 257 (383)
T 3ei3_B 210 AEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH------------------------------EKPVNAAY 257 (383)
T ss_dssp EEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC------------------------------SSCEEEEE
T ss_pred EEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC------------------------------CCceEEEE
Confidence 99998 555 799999999999999998 566666566 77899999
Q ss_pred eecC-CCCEEEEEEccCcEEEEecCCC
Q 001279 257 WASS-SGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 257 w~sp-dg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
|. | +|.+|++++.||.|++||+.+.
T Consensus 258 ~s-~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 258 FN-PTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp EC-TTTSCEEEEEESSSEEEEEETTBT
T ss_pred Ec-CCCCCEEEEEcCCCcEEEEECCCC
Confidence 86 8 9999999999999999999765
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=2.5e-28 Score=290.90 Aligned_cols=343 Identities=14% Similarity=0.189 Sum_probs=246.7
Q ss_pred EEeCCCCCC-EEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 70 LLISPSQLP-YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 70 ~~~~~h~~~-V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
..+.+|..+ ++++.| ++.+|++++.|++|++||+.+++.+..+ .|.+.|++++|++++ ++++|+.||+|++|+++
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 355678776 466666 5679999999999999999999988877 588999999999888 99999999999999986
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccc
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGV 227 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~ 227 (1108)
. +... ..+.+|. ..|.++.|+|..++.++++++.||.|++||+.++.............. .
T Consensus 192 ~--~~~~---~~~~~h~------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~ 252 (464)
T 3v7d_B 192 K--GCCT---HVFEGHN------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--V 252 (464)
T ss_dssp T--TEEE---EEECCCS------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE--E
T ss_pred C--CcEE---EEECCCC------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce--E
Confidence 4 4444 2355565 789999999766778899999999999999988753321111000000 0
Q ss_pred cCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCC
Q 001279 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 307 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ 307 (1108)
...+... .-.+.....+...|.++. +++.+|++|+.||.|++||+.++.. +
T Consensus 253 ~~~~~~~----~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~-----------~----------- 303 (464)
T 3v7d_B 253 FHTPEEN----PYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKC-----------L----------- 303 (464)
T ss_dssp ESCGGGC----TTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETTTTEE-----------E-----------
T ss_pred eeccCCC----eEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcE-----------E-----------
Confidence 0000000 000001111255666664 6799999999999999999864310 0
Q ss_pred ccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCC
Q 001279 308 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH 387 (1108)
Q Consensus 308 ~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~ 387 (1108)
..+ .+
T Consensus 304 ---~~~-------------------~~----------------------------------------------------- 308 (464)
T 3v7d_B 304 ---YIL-------------------SG----------------------------------------------------- 308 (464)
T ss_dssp ---EEE-------------------CC-----------------------------------------------------
T ss_pred ---EEe-------------------cC-----------------------------------------------------
Confidence 000 00
Q ss_pred cceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCC
Q 001279 388 KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS 467 (1108)
Q Consensus 388 ~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1108)
|...+
T Consensus 309 ---------------------------------------------~~~~v------------------------------ 313 (464)
T 3v7d_B 309 ---------------------------------------------HTDRI------------------------------ 313 (464)
T ss_dssp ---------------------------------------------CSSCE------------------------------
T ss_pred ---------------------------------------------CCCCE------------------------------
Confidence 00001
Q ss_pred CCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeC
Q 001279 468 HTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI 547 (1108)
Q Consensus 468 ~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d 547 (1108)
..++++++++.+++|+.||+|++||+.++.+. ..+.+|...|++++|+
T Consensus 314 -------------------~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~h~~~v~~~~~~-- 361 (464)
T 3v7d_B 314 -------------------YSTIYDHERKRCISASMDTTIRIWDLENGELM-----------YTLQGHTALVGLLRLS-- 361 (464)
T ss_dssp -------------------EEEEEETTTTEEEEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEEC--
T ss_pred -------------------EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-----------EEEeCCCCcEEEEEEc--
Confidence 11145566779999999999999999887755 3467899999999997
Q ss_pred CCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeE
Q 001279 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1108)
Q Consensus 548 ~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V 627 (1108)
+.+|++++.||.|++|++.... ... ...|...+..++|++++++|++|+ ||.|
T Consensus 362 ~~~l~s~s~dg~v~vwd~~~~~-------------------------~~~-~~~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDANDYS-------------------------RKF-SYHHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp SSEEEEEETTSEEEEEETTTCC-------------------------EEE-EEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred CCEEEEEeCCCcEEEEECCCCc-------------------------eee-eecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 6899999999999999998742 111 224777889999999999999999 8999
Q ss_pred EEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEE
Q 001279 628 AVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1108)
Q Consensus 628 ~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~ 697 (1108)
+|||+.+++++.. .+.+|..+|.++.|+. +.++++++.||.+++|
T Consensus 415 ~iwd~~~g~~~~~--~~~~~~~~v~~v~~~~-----------------------~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 415 NIYNLRSGKLVHA--NILKDADQIWSVNFKG-----------------------KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEETTTCCEEES--CTTTTCSEEEEEEEET-----------------------TEEEEEEEETTEEEEE
T ss_pred EEEECCCCcEEeh--hhccCCCcEEEEEecC-----------------------CEEEEEEEeCCeEEEE
Confidence 9999999998832 2567999999999981 4556666777766554
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2e-28 Score=285.31 Aligned_cols=219 Identities=16% Similarity=0.222 Sum_probs=173.5
Q ss_pred eeeeCCCCCceEEEEcC-CCCEEEEEECCCcEEEEecCCcceEEe--------------CCCCCCEEEEEEee-CCCEEE
Q 001279 29 AVHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLI--------------SPSQLPYKNLEFLQ-NQGFLI 92 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp-~~~~LA~Gs~dG~I~iw~~~~~~~~~~--------------~~h~~~V~~l~fs~-d~~~L~ 92 (1108)
....+|.+.|++++|+| ++++||+|+.||.|+||+....+.... ..|..+|.+++|+| ++.+|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 44568999999999999 999999999999999999976543311 24999999999999 778999
Q ss_pred EEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCC---CEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001279 93 SITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS---HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1108)
Q Consensus 93 S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~---~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1108)
+++.|+.|++||+.+++....+.+...+.++.+.+.+ .++++|+.+|.|++|++... ... ..+..|.
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~~~---~~~~~~~----- 186 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG--SCS---HILQGHR----- 186 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS--CCC---EEECCCC-----
T ss_pred EEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc--cee---eeecCCC-----
Confidence 9999999999999999999999999999999999855 49999999999999998753 332 2255554
Q ss_pred CCCCCCCCCeEEEecccCCCCC-EEEEEECCCeEEEEEccCCe-EEEEe-CCCcccccccccCCCCCCCCCcccCcCCCC
Q 001279 170 GFPLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVSEAQ-IIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1108)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~-~ll~~~~dg~V~lWdl~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1108)
..|.+++|+| ++. .|++++.||.|++||+..+. ..... .+... ..........
T Consensus 187 -------~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 242 (408)
T 4a11_B 187 -------QEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---------------KSQAVESANT 242 (408)
T ss_dssp -------SCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC---------------SCCCTTTSSC
T ss_pred -------CcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccc---------------cceeeccccc
Confidence 7899999999 455 58899999999999998764 22222 11000 0000011112
Q ss_pred CCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 247 PEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.+...|++++|. |+|.+|++++.||.|++||+.++
T Consensus 243 ~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 243 AHNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp SCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTC
T ss_pred cccCceeEEEEc-CCCCEEEEecCCCeEEEEECCCC
Confidence 337789999986 99999999999999999999765
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=5.9e-29 Score=284.38 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=164.8
Q ss_pred eeeCCCCCceEEEEcCCCC-EEEEEEC---CCcEEEEecCCcce--EEeCCCCCCEEEEEEeeC---CCEEEEEeCCCcE
Q 001279 30 VHYGIPATASILAFDHIQR-LLAIATL---DGRIKVIGGDGIEG--LLISPSQLPYKNLEFLQN---QGFLISITNDNEI 100 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~-~LA~Gs~---dG~I~iw~~~~~~~--~~~~~h~~~V~~l~fs~d---~~~L~S~s~d~~I 100 (1108)
...||...|.+++|+|++. ++|+|+. ||.|+||+....+. ....+|..+|.+++|+|+ +.+|++++.|+.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 4468999999999999985 5566766 99999999976654 344579999999999998 6999999999999
Q ss_pred EEEEcCCCe-eeeee-cCCCCeeEEEE------ecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001279 101 QVWSLESRS-LACCL-KWESNITAFSV------ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1108)
Q Consensus 101 ~vWd~~s~~-~~~~~-~~~~~Itsl~~------~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1108)
++||+.+++ .+..+ .|...|+++.+ ++++++|++|+.||.|++|++......+. .+..+.
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~----~~~~~~-------- 160 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA----NMEPVQ-------- 160 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE----EECCCT--------
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce----eccccC--------
Confidence 999999887 65555 68889999955 67899999999999999999875331221 132221
Q ss_pred CCCCCCeEEEe----cccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCC
Q 001279 173 LLSHQPVVGVL----PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1108)
Q Consensus 173 ~~~~~~V~~v~----f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1108)
......|.++. |+| ++..|++++.||.|++||+.+++......|
T Consensus 161 ~~~~~~v~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------------------------------ 208 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDLRNMALRWETNI------------------------------ 208 (357)
T ss_dssp TSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEEEEEEEC------------------------------
T ss_pred CCCCCceEEEEEEeccCC--CCCEEEEEccCCeEEEEECccCceeeecCC------------------------------
Confidence 00114788888 656 688899999999999999999988766666
Q ss_pred CCceeEEEeecC---CCCEEEEEEccCcEEEEecC
Q 001279 249 EKEISALCWASS---SGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 249 ~~~Vtsl~w~sp---dg~~l~sg~~DG~I~lWd~~ 280 (1108)
...|++++|. | ++.+|++++.||.|++||+.
T Consensus 209 ~~~v~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 209 KNGVCSLEFD-RKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp SSCEEEEEES-CSSSSCCEEEEEESTTEEEEEEEE
T ss_pred CCceEEEEcC-CCCCCCCEEEEECCCCeEEEEeCc
Confidence 7789999986 8 89999999999999999874
No 60
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=7.1e-28 Score=285.45 Aligned_cols=318 Identities=16% Similarity=0.230 Sum_probs=249.8
Q ss_pred EEeCCCCCCE-EEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 70 LLISPSQLPY-KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 70 ~~~~~h~~~V-~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
..+.+|...| ++ +.+++.+|++++.|+.|++||+.+++.+..+ .|...|++++++ ++++++|+.||.|++|+++
T Consensus 112 ~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 112 KVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 4566788765 55 5556889999999999999999999888777 688999999997 6799999999999999986
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCccccccc
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDG 226 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~ 226 (1108)
. ++.. ..+.+|. ..|.++.|+ +..+++++.||.|++||+.+++.+. +.+|
T Consensus 188 ~--~~~~---~~~~~h~------------~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------- 238 (445)
T 2ovr_B 188 T--GECI---HTLYGHT------------STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGH-------- 238 (445)
T ss_dssp T--TEEE---EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECC--------
T ss_pred c--CcEE---EEECCCC------------CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCC--------
Confidence 4 4444 3356665 789999994 4569999999999999999987654 3445
Q ss_pred ccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccC
Q 001279 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1108)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~ 306 (1108)
...|++++| ++..|++|+.||.|++||+.++.
T Consensus 239 ----------------------~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~----------------------- 270 (445)
T 2ovr_B 239 ----------------------VAAVRCVQY---DGRRVVSGAYDFMVKVWDPETET----------------------- 270 (445)
T ss_dssp ----------------------SSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTE-----------------------
T ss_pred ----------------------cccEEEEEE---CCCEEEEEcCCCEEEEEECCCCc-----------------------
Confidence 778999996 68899999999999999985431
Q ss_pred CccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCC
Q 001279 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1108)
Q Consensus 307 ~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~ 386 (1108)
++..+ .+
T Consensus 271 --~~~~~-------------------~~---------------------------------------------------- 277 (445)
T 2ovr_B 271 --CLHTL-------------------QG---------------------------------------------------- 277 (445)
T ss_dssp --EEEEE-------------------CC----------------------------------------------------
T ss_pred --EeEEe-------------------cC----------------------------------------------------
Confidence 00000 00
Q ss_pred CcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccC
Q 001279 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1108)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1108)
|...+++.
T Consensus 278 ----------------------------------------------~~~~v~~~-------------------------- 285 (445)
T 2ovr_B 278 ----------------------------------------------HTNRVYSL-------------------------- 285 (445)
T ss_dssp ----------------------------------------------CSSCEEEE--------------------------
T ss_pred ----------------------------------------------CCCceEEE--------------------------
Confidence 00001111
Q ss_pred CCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe
Q 001279 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1108)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~ 546 (1108)
.+ ++..+++|+.||+|++||+.++.+. ..+.+|...|.++++
T Consensus 286 -----------------------~~--~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~-- 327 (445)
T 2ovr_B 286 -----------------------QF--DGIHVVSGSLDTSIRVWDVETGNCI-----------HTLTGHQSLTSGMEL-- 327 (445)
T ss_dssp -----------------------EE--CSSEEEEEETTSCEEEEETTTCCEE-----------EEECCCCSCEEEEEE--
T ss_pred -----------------------EE--CCCEEEEEeCCCeEEEEECCCCCEE-----------EEEcCCcccEEEEEE--
Confidence 11 3448999999999999999988755 346688889988877
Q ss_pred CCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEee---cCcCEEEEEEcCCCCEEEEEeC
Q 001279 547 INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL---VNSPVRALQFTSSGAKLAVGFE 623 (1108)
Q Consensus 547 d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---h~~~Vtslafspdg~~LavGs~ 623 (1108)
++++|++|+.||.|++|++... .++..+.. |...|++++|+ +++|++|+.
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~-------------------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 380 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTG-------------------------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD 380 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTC-------------------------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEET
T ss_pred eCCEEEEEeCCCeEEEEECCCC-------------------------cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC
Confidence 4679999999999999999764 23455554 88999999996 578999999
Q ss_pred CCeEEEEEccCceEEEEeecC--CCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCcc----EEEE
Q 001279 624 CGRVAVLDMNLLSVLFFTDDI--SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAK----ISIV 697 (1108)
Q Consensus 624 dG~V~vwd~~~~~~~~~~~~~--~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~----v~v~ 697 (1108)
||.|++||+.+++.+...... .+|.+.|.+++|+ |++.+|++++.||+ |.||
T Consensus 381 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~la~~~~dg~~~~~l~v~ 438 (445)
T 2ovr_B 381 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS----------------------NTKLVCAVGSRNGTEETKLLVL 438 (445)
T ss_dssp TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC----------------------SSEEEEEEECSSSSSCCEEEEE
T ss_pred CCeEEEEECCCCceeeeeeccccCCCCceEEEEEec----------------------CCEEEEEEcccCCCCccEEEEE
Confidence 999999999999887554222 3588999999999 56889999999998 9999
Q ss_pred eCC
Q 001279 698 GGS 700 (1108)
Q Consensus 698 d~~ 700 (1108)
|.+
T Consensus 439 df~ 441 (445)
T 2ovr_B 439 DFD 441 (445)
T ss_dssp ECC
T ss_pred ECC
Confidence 975
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.4e-29 Score=288.54 Aligned_cols=328 Identities=12% Similarity=0.161 Sum_probs=231.6
Q ss_pred EeCCCCCCEEEEEEeeC----CCEEEEEeCCCcEEEEEcCCCeeeeeec------CCCCeeEEEEecC----CCEEEEEe
Q 001279 71 LISPSQLPYKNLEFLQN----QGFLISITNDNEIQVWSLESRSLACCLK------WESNITAFSVISG----SHFMYIGD 136 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d----~~~L~S~s~d~~I~vWd~~s~~~~~~~~------~~~~Itsl~~~~~----~~~l~vg~ 136 (1108)
+..+|..+|.+++|+|+ ...+++++.++.|++||+.+++.+..+. +...|++++|+|+ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 55689999999999984 5667777778899999999887665542 5578999999999 67999999
Q ss_pred CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 137 ~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
.||.|++|++.. ++... .+.+|. ..|.+++|+|. ++.+|++++.||.|++||+.+++.....
T Consensus 93 ~dg~i~v~d~~~--~~~~~---~~~~~~------------~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 154 (366)
T 3k26_A 93 SRGIIRIINPIT--MQCIK---HYVGHG------------NAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIF 154 (366)
T ss_dssp TTCEEEEECTTT--CCEEE---EEESCC------------SCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEchh--ceEee---eecCCC------------CcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence 999999999764 34442 255555 78999999985 5778999999999999999999876654
Q ss_pred ----CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCC
Q 001279 217 ----GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGS 292 (1108)
Q Consensus 217 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~ 292 (1108)
+| ...|++++|. |++.+|++++.||.|++||+.+......
T Consensus 155 ~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~----- 198 (366)
T 3k26_A 155 GGVEGH------------------------------RDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNA----- 198 (366)
T ss_dssp CSTTSC------------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHH-----
T ss_pred cccccc------------------------------cCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccc-----
Confidence 33 7789999986 9999999999999999999975421100
Q ss_pred CCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccc
Q 001279 293 RNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFA 372 (1108)
Q Consensus 293 ~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~ 372 (1108)
+.. . ....+++..+...... ..
T Consensus 199 ------~~~---------------~---~~~~~~~~~~~~~~~~---------~~------------------------- 220 (366)
T 3k26_A 199 ------IKE---------------S---YDYNPNKTNRPFISQK---------IH------------------------- 220 (366)
T ss_dssp ------HHH---------------H---HTCCGGGCSSCCCCEE---------EC-------------------------
T ss_pred ------cce---------------e---EEecCCCCccccccee---------ec-------------------------
Confidence 000 0 0011110000000000 00
Q ss_pred eEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCch
Q 001279 373 DMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSS 452 (1108)
Q Consensus 373 ~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~ 452 (1108)
. ...
T Consensus 221 ----~--------------------~~~---------------------------------------------------- 224 (366)
T 3k26_A 221 ----F--------------------PDF---------------------------------------------------- 224 (366)
T ss_dssp ----C--------------------CSE----------------------------------------------------
T ss_pred ----c--------------------Ccc----------------------------------------------------
Confidence 0 000
Q ss_pred hhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeecc--c-cce
Q 001279 453 KGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDA--E-VQG 529 (1108)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~--~-~~~ 529 (1108)
....++...+..++++ ++++++|+.||.|++||+............. . ..-
T Consensus 225 ------------------------~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T 3k26_A 225 ------------------------STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278 (366)
T ss_dssp ------------------------EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred ------------------------ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence 0001111222222333 5589999999999999988765310000000 0 001
Q ss_pred eeccCCCCCeEEEEEEeC--CCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeec--CcC
Q 001279 530 IEVAGSRAPVSTLSFCFI--NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV--NSP 605 (1108)
Q Consensus 530 ~~l~~h~~~Vt~lafs~d--~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h--~~~ 605 (1108)
..+..|...|++++|+|+ +++|++|+.||.|++|++...... ......+..| ...
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------~~~~~~~~~~~~~~~ 337 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH---------------------KAKCTTLTHHKCGAA 337 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG---------------------GCEEEEECCTTCCSC
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc---------------------cccceEEcccccCCc
Confidence 236688899999999999 999999999999999999875221 0123456666 799
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001279 606 VRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1108)
Q Consensus 606 Vtslafspdg~~LavGs~dG~V~vwd~~ 633 (1108)
|++++|+|++++|++|+.||.|+|||+.
T Consensus 338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 338 IRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999999999999985
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-30 Score=309.95 Aligned_cols=192 Identities=10% Similarity=0.052 Sum_probs=138.2
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCcce-----EEeCCCCCCEEEEEEeeC------CCEEEEEeCCCcEEEEEcCCCeee
Q 001279 43 FDHIQRLLAIATLDGRIKVIGGDGIEG-----LLISPSQLPYKNLEFLQN------QGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 43 ~sp~~~~LA~Gs~dG~I~iw~~~~~~~-----~~~~~h~~~V~~l~fs~d------~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
.+|+++++|+|+.||.|+||+++..+. ..+..|.+.|..|+|+|+ +.+|++++.|++|+|||+.++...
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 478899999999999999999965543 234567889999999996 579999999999999999876421
Q ss_pred -----------eee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 112 -----------CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 112 -----------~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
..+ .|...|++++|+++ .+|++|+.||+|++|++.... ... ..+.+|. ..|
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~-~~~---~~~~~H~------------~~V 311 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE-VPS---FYDQVHD------------SYI 311 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS-SCS---EEEECSS------------SCE
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC-Cce---EEeeccc------------ccE
Confidence 122 57789999999986 489999999999999987421 111 2355665 789
Q ss_pred EEE--ecccCCCC-CEEEEEECCCeEEEEEccCCeEE-EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEE
Q 001279 180 VGV--LPHPNSSG-NRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1108)
Q Consensus 180 ~~v--~f~P~~~~-~~ll~~~~dg~V~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1108)
.+| .|+| ++ .+|++++.|++|+|||+++++.. .+.+|. ....|.++
T Consensus 312 ~sv~~~~s~--~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~----------------------------~~~~v~~v 361 (524)
T 2j04_B 312 LSVSTAYSD--FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF----------------------------RGSNLVPV 361 (524)
T ss_dssp EEEEEECCT--TSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC----------------------------SCCSCCCE
T ss_pred EEEEEEcCC--CCCeEEEEeccCCeEEEEECCCCCccccccccc----------------------------ccCcccce
Confidence 999 5655 55 77999999999999999887542 222330 02357889
Q ss_pred EeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 256 CWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 256 ~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+|. |++..+++++.|++|++||+.++
T Consensus 362 ~fs-p~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 362 VYC-PQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp EEE-TTTTEEEEECSSSEEEEEETTCT
T ss_pred EeC-CCcCeEEEeCCCCcEEEEECccc
Confidence 986 99999999999999999998643
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.1e-28 Score=284.75 Aligned_cols=216 Identities=13% Similarity=0.123 Sum_probs=166.5
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc-------eEEeCCCCCCEEEEEEeeC----C---CEEEEE
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQN----Q---GFLISI 94 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-------~~~~~~h~~~V~~l~fs~d----~---~~L~S~ 94 (1108)
....||...|.+++|+| ++||+|+.||.|+||+....+ ......|..+|.+++|+|+ + .+|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 34458999999999999 899999999999999997665 5667789999999999999 9 999999
Q ss_pred eCCCcEEEEEcCCCee-----eeee-cC-----CCCeeEEEEe----cCCCE-EEEEeCCCcEEEEEEec------CCCe
Q 001279 95 TNDNEIQVWSLESRSL-----ACCL-KW-----ESNITAFSVI----SGSHF-MYIGDENGLMSVIKYDA------DEGK 152 (1108)
Q Consensus 95 s~d~~I~vWd~~s~~~-----~~~~-~~-----~~~Itsl~~~----~~~~~-l~vg~~dg~V~vw~~d~------~~~~ 152 (1108)
+.|+.|++||+.+++. +..+ .+ ...|++++|+ |++++ |++|+.||.|++|++.. ....
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999999998875 5555 45 4899999999 99999 99999999999999985 2111
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCC
Q 001279 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1108)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1108)
.......+.+ .......+...|.+++|+| ++ .|++++.||.|++||+.+++.+..+...
T Consensus 168 ~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------- 226 (397)
T 1sq9_A 168 NWSPTLELQG-----TVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQ------------- 226 (397)
T ss_dssp CCCCEEEEEE-----EECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECC-------------
T ss_pred eccCcceeee-----eeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecc-------------
Confidence 1000001211 0000112237799999998 56 8999999999999999998765543110
Q ss_pred CCCCCcccCcCCCCCC---CCceeEEEeecCCCCEEEEEEcc---CcEEEEecCC
Q 001279 233 EGDSTFLEGISEHQPE---EKEISALCWASSSGSILAVGYID---GDILLWNTST 281 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~---~~~Vtsl~w~spdg~~l~sg~~D---G~I~lWd~~~ 281 (1108)
..+ ...|++++|. |++.+|++++.| |.|++||+.+
T Consensus 227 -------------~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 227 -------------HSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp -------------C---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETTT
T ss_pred -------------ccccccCCccceEEEC-CCCCEEEEEecCCCCceEEEEECCC
Confidence 001 5679999985 999999999999 9999999864
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=7.8e-28 Score=286.59 Aligned_cols=219 Identities=16% Similarity=0.231 Sum_probs=166.7
Q ss_pred ceeeeeeCCCCCc-eEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001279 26 LRIAVHYGIPATA-SILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1108)
Q Consensus 26 ~~~~~~~G~~~~i-s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1108)
+......||...+ +|+++ ++.+||+|+.||.|++||....+.+ ...+|.++|.+++|++++ +|++++.|++|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3444556888875 66666 4689999999999999999765554 566899999999999987 99999999999999
Q ss_pred EcCCCeeeeee-cCCCCeeEEEEe--cCCCEEEEEeCCCcEEEEEEecCCCeeeee-----ceeeccccc-ccccCCCCC
Q 001279 104 SLESRSLACCL-KWESNITAFSVI--SGSHFMYIGDENGLMSVIKYDADEGKLFQL-----PYNISADAL-SEKAGFPLL 174 (1108)
Q Consensus 104 d~~s~~~~~~~-~~~~~Itsl~~~--~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~-----~~~i~~~~~-~~~~~~~~~ 174 (1108)
|+.+++.+..+ .|...|++++++ ++++++++|+.||.|++|++.......... +..+..... .........
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 99999988777 488999999999 467899999999999999987532211100 000000000 000001122
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE-eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCcee
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 253 (1108)
+...|.++.+ ++.++++++.||.|++||+.+++.+.. .+| ...|+
T Consensus 269 ~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------------------------~~~v~ 314 (464)
T 3v7d_B 269 HMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGH------------------------------TDRIY 314 (464)
T ss_dssp CSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEE
T ss_pred ccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCC------------------------------CCCEE
Confidence 3367888855 567899999999999999999887654 344 77899
Q ss_pred EEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 254 ALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 254 sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+++|. |++..|++|+.||.|++||+.++
T Consensus 315 ~~~~~-~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 315 STIYD-HERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp EEEEE-TTTTEEEEEETTSCEEEEETTTT
T ss_pred EEEEc-CCCCEEEEEeCCCcEEEEECCCC
Confidence 99986 99999999999999999998654
No 65
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=6.5e-29 Score=286.07 Aligned_cols=309 Identities=13% Similarity=0.094 Sum_probs=217.0
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCC-------cEEEEecCCcc-----------eEEeCCCCCCEEEEEEeeCCCEEEE
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDG-------RIKVIGGDGIE-----------GLLISPSQLPYKNLEFLQNQGFLIS 93 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG-------~I~iw~~~~~~-----------~~~~~~h~~~V~~l~fs~d~~~L~S 93 (1108)
|-+..+|.|++|+|++++||+|+.|. .|+||+.+... ...+..|...|.+++|. +..+++
T Consensus 11 ~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~ 88 (365)
T 4h5i_A 11 YNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILV 88 (365)
T ss_dssp EECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEE
T ss_pred cCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEE
Confidence 33456699999999999999998643 59999985431 12355677788877665 456777
Q ss_pred EeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001279 94 ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 94 ~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1108)
++.++..++| .|+.|+.+++|+++.....+... ...... ...
T Consensus 89 g~~~~~~~l~------------------------------s~~~d~~~r~~~~~~~~~~~~~~-~~~~~~-------~~~ 130 (365)
T 4h5i_A 89 GCNENSTKIT------------------------------QGKGNKHLRKFKYDKVNDQLEFL-TSVDFD-------AST 130 (365)
T ss_dssp ECCCCHHHHH------------------------------HTSCCCCEEEEEEETTTTEEEEE-EEECSS-------CCC
T ss_pred EECCCccEEE------------------------------EecCCCcEEEEEecCCCceEEEe-eeecee-------ecC
Confidence 7655544443 34456778888887655444321 001100 011
Q ss_pred CCCCCeEEEecccCCCCCEEEEEE--CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCc
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAY--ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~--~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1108)
.....+.+++|+| +|+++++++ .|++|+|||+.+++.+....| ...
T Consensus 131 ~~~~~~~~v~fSp--Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~ 178 (365)
T 4h5i_A 131 NADDYTKLVYISR--EGTVAAIASSKVPAIMRIIDPSDLTEKFEIET------------------------------RGE 178 (365)
T ss_dssp CTTCCEEEEEECT--TSSCEEEEESCSSCEEEEEETTTTEEEEEEEC------------------------------SSC
T ss_pred CcccCEEEEEEcC--CCCEEEEEECCCCCEEEEeECCCCcEEEEeCC------------------------------CCc
Confidence 1235689999999 788777665 689999999999988777666 677
Q ss_pred eeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEE
Q 001279 252 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFV 331 (1108)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv 331 (1108)
|.+++|. |||++|++++.++ +.+|+..++.. ......
T Consensus 179 V~~v~fs-pdg~~l~s~s~~~-~~~~~~~~~~~-----------~~~~~~------------------------------ 215 (365)
T 4h5i_A 179 VKDLHFS-TDGKVVAYITGSS-LEVISTVTGSC-----------IARKTD------------------------------ 215 (365)
T ss_dssp CCEEEEC-TTSSEEEEECSSC-EEEEETTTCCE-----------EEEECC------------------------------
T ss_pred eEEEEEc-cCCceEEecccee-EEEEEeccCcc-----------eeeeec------------------------------
Confidence 9999985 9999999998555 55665543210 000000
Q ss_pred EeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeee
Q 001279 332 YGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTL 411 (1108)
Q Consensus 332 ~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~ 411 (1108)
T Consensus 216 -------------------------------------------------------------------------------- 215 (365)
T 4h5i_A 216 -------------------------------------------------------------------------------- 215 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCcccc
Q 001279 412 LSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKC 491 (1108)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~ 491 (1108)
.++...+..+++
T Consensus 216 --------------------------------------------------------------------~~~~~~v~~v~f 227 (365)
T 4h5i_A 216 --------------------------------------------------------------------FDKNWSLSKINF 227 (365)
T ss_dssp --------------------------------------------------------------------CCTTEEEEEEEE
T ss_pred --------------------------------------------------------------------CCCCCCEEEEEE
Confidence 000000011246
Q ss_pred CCCCcEEEEEecCC----cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecC
Q 001279 492 HSVDRVYLAGYHDG----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 492 s~~~~llatgs~DG----tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
+|+++++++++.|+ .+++||+.......... ..+.+|..+|++|+|+|||++||+|+.||+|+||++.+
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS-------KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE-------EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred cCCCCEEEEEecCCcceeEEeecccccceecceee-------eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence 67777899998887 58889987665432111 23678999999999999999999999999999999877
Q ss_pred CCCCccccccccCccceeecccCCcceEEEE-EeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCc
Q 001279 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAV-FSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~ 635 (1108)
. +++.. +.+|..+|++|+|||||++||+|+.|++|+|||+...
T Consensus 301 ~-------------------------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 301 L-------------------------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp T-------------------------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred C-------------------------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 5 34555 4689999999999999999999999999999999643
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=2.3e-28 Score=281.30 Aligned_cols=308 Identities=15% Similarity=0.068 Sum_probs=229.8
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEE
Q 001279 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1108)
Q Consensus 116 ~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1108)
|...|++++|+|++++|++|+.+|.|++|+++....... ..+.+|. ..|.+++|+| ++.+|++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~---~~~~~h~------------~~v~~~~~~~--~~~~l~~ 69 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV---HELKEHN------------GQVTGVDWAP--DSNRIVT 69 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE---EEEECCS------------SCEEEEEEET--TTTEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee---eeecCCC------------CcccEEEEeC--CCCEEEE
Confidence 678899999999999999999999999999985321133 3355555 7899999998 6888999
Q ss_pred EECCCeEEEEEccCCeEEEE---eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC
Q 001279 196 AYENALVILWDVSEAQIIFV---GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1108)
Q Consensus 196 ~~~dg~V~lWdl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG 272 (1108)
++.||.|++||+.+++.... .+| ...|++++|. |++.+|++++.||
T Consensus 70 ~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~~d~ 118 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRTWKPTLVILRI------------------------------NRAARCVRWA-PNEKKFAVGSGSR 118 (372)
T ss_dssp EETTSCEEEEEEETTEEEEEEECCCC------------------------------SSCEEEEEEC-TTSSEEEEEETTS
T ss_pred EcCCCeEEEEECCCCeeeeeEEeecC------------------------------CCceeEEEEC-CCCCEEEEEeCCC
Confidence 99999999999999875433 233 6789999986 9999999999999
Q ss_pred cEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccc
Q 001279 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1108)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1108)
.|++||+...... ... . .+.
T Consensus 119 ~v~i~d~~~~~~~-------------------------~~~------------------~------------~~~----- 138 (372)
T 1k8k_C 119 VISICYFEQENDW-------------------------WVC------------------K------------HIK----- 138 (372)
T ss_dssp SEEEEEEETTTTE-------------------------EEE------------------E------------EEC-----
T ss_pred EEEEEEecCCCcc-------------------------eee------------------e------------eee-----
Confidence 9999998643100 000 0 000
Q ss_pred cccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccC
Q 001279 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1108)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1108)
T Consensus 139 -------------------------------------------------------------------------------- 138 (372)
T 1k8k_C 139 -------------------------------------------------------------------------------- 138 (372)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeC
Q 001279 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1108)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~ 512 (1108)
.++...+..++++++++++++|+.||.|++||+
T Consensus 139 -----------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 139 -----------------------------------------------KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp -----------------------------------------------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred -----------------------------------------------cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 000001112245667779999999999999997
Q ss_pred CCCceeeEee-------eccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCcccee
Q 001279 513 TYPVFKLICA-------LDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVH 585 (1108)
Q Consensus 513 ~~~~l~~~~~-------l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~ 585 (1108)
.......... .........+.+|...|++++|+|++++|++++.||.|++|++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------- 234 (372)
T 1k8k_C 172 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK----------------- 234 (372)
T ss_dssp CCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-----------------
T ss_pred ccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------------
Confidence 5221110000 0000000235688999999999999999999999999999999765
Q ss_pred ecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccC--ceEEEE-----------------------
Q 001279 586 ALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL--LSVLFF----------------------- 640 (1108)
Q Consensus 586 ~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~--~~~~~~----------------------- 640 (1108)
.++..+..|..+|++++|+|++++|++| .||.|++||+.. +...+.
T Consensus 235 --------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (372)
T 1k8k_C 235 --------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 305 (372)
T ss_dssp --------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred --------ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhc
Confidence 2567778899999999999999999988 899999999988 532110
Q ss_pred -------------eecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCc---cEEEEEcCCccEEEEeCCCcce
Q 001279 641 -------------TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE---EVIIVLFKDAKISIVGGSSENM 704 (1108)
Q Consensus 641 -------------~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~---~~L~s~s~Dg~v~v~d~~~g~~ 704 (1108)
.....+|..+|.+++|.+ +++ .+|++++.||.|++||..+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---------------------~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLS---------------------GGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCCC---------CCCSSSSSSCEEEEEEEE---------------------STTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ccccccccCccccccccccccCCcceeEEec---------------------CCCcceeeEEEecCCCceEEEEecChhH
Confidence 112248999999999773 334 8999999999999999987665
Q ss_pred e
Q 001279 705 I 705 (1108)
Q Consensus 705 l 705 (1108)
+
T Consensus 365 ~ 365 (372)
T 1k8k_C 365 A 365 (372)
T ss_dssp H
T ss_pred h
Confidence 4
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=9.8e-30 Score=300.58 Aligned_cols=206 Identities=16% Similarity=0.167 Sum_probs=164.7
Q ss_pred eeCCCCCceEEEEcC-CCCEEEEEECCCcEEEEecCCcc---eEEeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEEc
Q 001279 31 HYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 31 ~~G~~~~is~la~sp-~~~~LA~Gs~dG~I~iw~~~~~~---~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd~ 105 (1108)
..+|...|+||+|+| ++.+||+|+.||.|+|||+...+ .+...+|.++|++|+|+| ++.+|++++.|++|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 357788999999999 56799999999999999986543 234557999999999998 6889999999999999999
Q ss_pred CCCeeeeeec---CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 106 ESRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 106 ~s~~~~~~~~---~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
+++....... +...+++++|++++++|++|+.||.|++|+++. +.. ..+.+|. ..|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---~~~---~~~~~h~------------~~v~~v 256 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---KEL---WNLRMHK------------KKVTHV 256 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS---CBC---CCSBCCS------------SCEEEE
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc---cee---EEEeccc------------ceEEee
Confidence 8876544443 334689999999999999999999999999763 222 2355555 789999
Q ss_pred ecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
+|+|. ....|++++.|+.|+|||+.+.+....... ...+...|++++|. |+|
T Consensus 257 ~~~p~-~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~--------------------------~~~h~~~v~~~~~s-pdg 308 (435)
T 4e54_B 257 ALNPC-CDWFLATASVDQTVKIWDLRQVRGKASFLY--------------------------SLPHRHPVNAACFS-PDG 308 (435)
T ss_dssp EECTT-CSSEEEEEETTSBCCEEETTTCCSSSCCSB--------------------------CCBCSSCEEECCBC-TTS
T ss_pred eecCC-CceEEEEecCcceeeEEecccccccceEEE--------------------------eeeccccccceeEC-CCC
Confidence 99995 334688999999999999987643211100 00127789999985 999
Q ss_pred CEEEEEEccCcEEEEecCCC
Q 001279 263 SILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.+|++++.||.|++||+.++
T Consensus 309 ~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 309 ARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp SEEEEEESSSCEEEEESSSS
T ss_pred CeeEEEcCCCEEEEEECCCC
Confidence 99999999999999999765
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.8e-28 Score=277.11 Aligned_cols=304 Identities=11% Similarity=0.115 Sum_probs=237.6
Q ss_pred eeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 112 CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 112 ~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
....|...|++++|+|++++|++|+.||.|+||++.. +.... .+.+|. ..|.+++|+| ++.
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~---~~~~h~------------~~v~~~~~~~--~~~ 87 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--GERLG---TLDGHT------------GTIWSIDVDC--FTK 87 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--CCEEE---EECCCS------------SCEEEEEECT--TSS
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--chhhh---hhhhcC------------CcEEEEEEcC--CCC
Confidence 3447889999999999999999999999999999764 34442 356665 7899999988 688
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc
Q 001279 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1108)
Q Consensus 192 ~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D 271 (1108)
+|++++.||.|++||+.+++.+....+ ...|++++|. |++.+|++++.+
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~~~ 136 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWKS------------------------------PVPVKRVEFS-PCGNYFLAILDN 136 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEEC------------------------------SSCEEEEEEC-TTSSEEEEEECC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeec------------------------------CCCeEEEEEc-cCCCEEEEecCC
Confidence 899999999999999999987766545 6789999986 999999999999
Q ss_pred -----CcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEE
Q 001279 272 -----GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1108)
Q Consensus 272 -----G~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl 346 (1108)
|.|.+||+........ +... ..... ..+
T Consensus 137 ~~~~~g~i~~~d~~~~~~~~~----------------------~~~~-------------------~~~~~------~~~ 169 (369)
T 3zwl_B 137 VMKNPGSINIYEIERDSATHE----------------------LTKV-------------------SEEPI------HKI 169 (369)
T ss_dssp BTTBCCEEEEEEEEECTTTCC----------------------EEEE-------------------CSSCS------EEE
T ss_pred ccCCCCEEEEEEecCCcccee----------------------eccc-------------------cccee------eec
Confidence 9999999865421110 0000 00000 000
Q ss_pred eccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccC
Q 001279 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1108)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1108)
. .
T Consensus 170 ~-----------------------------------------------~------------------------------- 171 (369)
T 3zwl_B 170 I-----------------------------------------------T------------------------------- 171 (369)
T ss_dssp E-----------------------------------------------C-------------------------------
T ss_pred c-----------------------------------------------C-------------------------------
Confidence 0 0
Q ss_pred CccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCc
Q 001279 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS 506 (1108)
Q Consensus 427 ~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGt 506 (1108)
+.. ...+..++++++++++++|+.||.
T Consensus 172 ------~~~-----------------------------------------------~~~~~~~~~~~~~~~l~~~~~dg~ 198 (369)
T 3zwl_B 172 ------HEG-----------------------------------------------LDAATVAGWSTKGKYIIAGHKDGK 198 (369)
T ss_dssp ------CTT-----------------------------------------------CCCEEEEEECGGGCEEEEEETTSE
T ss_pred ------CcC-----------------------------------------------ccceeEEEEcCCCCEEEEEcCCCE
Confidence 000 001112256677789999999999
Q ss_pred EEEEeCCC-CceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCcccee
Q 001279 507 VRIWDATY-PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVH 585 (1108)
Q Consensus 507 VriWd~~~-~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~ 585 (1108)
|++||+.. .... ..+..|...|++++|+|++++|++++.||.|++|++....
T Consensus 199 i~i~d~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------------- 251 (369)
T 3zwl_B 199 ISKYDVSNNYEYV-----------DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ---------------- 251 (369)
T ss_dssp EEEEETTTTTEEE-----------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----------------
T ss_pred EEEEECCCCcEeE-----------EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc----------------
Confidence 99999987 3332 2356788999999999999999999999999999997752
Q ss_pred ecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCC--------------eEEEEEccCceEEEEeecCCCCCCce
Q 001279 586 ALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG--------------RVAVLDMNLLSVLFFTDDISGSSSPI 651 (1108)
Q Consensus 586 ~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG--------------~V~vwd~~~~~~~~~~~~~~~h~~~V 651 (1108)
++..+. +...+++++|+|+++++++|+.++ .|++||+.++..+. .+.+|...|
T Consensus 252 ---------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~v 318 (369)
T 3zwl_B 252 ---------VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG---RVQGHFGPL 318 (369)
T ss_dssp ---------EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE---EEECCSSCE
T ss_pred ---------eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh---heecccCcE
Confidence 333343 788999999999999999999998 89999999998874 445699999
Q ss_pred EEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCccee
Q 001279 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 705 (1108)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l 705 (1108)
.++.|+ |++.+|++++.||.|++||.+.+...
T Consensus 319 ~~~~~s----------------------~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 319 NTVAIS----------------------PQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEEEEC----------------------TTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred EEEEEC----------------------CCCCEEEEEcCCCeEEEEECccccch
Confidence 999999 56889999999999999999876654
No 69
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-28 Score=270.77 Aligned_cols=287 Identities=13% Similarity=0.176 Sum_probs=226.9
Q ss_pred eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
...+.+|..+|++++| +++.+|++++.|+.|++||+.+++....+ .|...|++++|+|+++++++|+.||.|++|++.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 3467789999999999 99999999999999999999998877666 678999999999999999999999999999976
Q ss_pred cCC-CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCCcccccc
Q 001279 148 ADE-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKD 225 (1108)
Q Consensus 148 ~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~ 225 (1108)
... .... ..+.+|. ..|.++.| ++..+++++.||.|++|| .++. .....|
T Consensus 90 ~~~~~~~~---~~~~~~~------------~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~------- 141 (313)
T 3odt_A 90 ATSGEDPL---YTLIGHQ------------GNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAH------- 141 (313)
T ss_dssp CCTTSCC----CEECCCS------------SCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECC-------
T ss_pred ecCCCCcc---cchhhcc------------cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccC-------
Confidence 432 1222 2345554 78999999 356799999999999999 4433 344445
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeeccccc
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~ 305 (1108)
...|.+++|.++++..+++++.||.|++||.... ..
T Consensus 142 -----------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------~~-------- 177 (313)
T 3odt_A 142 -----------------------NASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-------------IK-------- 177 (313)
T ss_dssp -----------------------SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-------------EE--------
T ss_pred -----------------------CCceeEEEEccCCCCEEEEEECCCCEEEEecCce-------------EE--------
Confidence 7789999998559999999999999999993210 00
Q ss_pred CCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCC
Q 001279 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1108)
Q Consensus 306 ~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~ 385 (1108)
.+ . . .
T Consensus 178 ------~~---------~---------~--------------------------------~------------------- 182 (313)
T 3odt_A 178 ------TF---------S---------G--------------------------------I------------------- 182 (313)
T ss_dssp ------EE---------C---------S--------------------------------S-------------------
T ss_pred ------EE---------e---------c--------------------------------c-------------------
Confidence 00 0 0 0
Q ss_pred CCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhcccc
Q 001279 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1108)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1108)
+...++
T Consensus 183 -----------------------------------------------~~~~i~--------------------------- 188 (313)
T 3odt_A 183 -----------------------------------------------HNDVVR--------------------------- 188 (313)
T ss_dssp -----------------------------------------------CSSCEE---------------------------
T ss_pred -----------------------------------------------CcccEE---------------------------
Confidence 000011
Q ss_pred CCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEE
Q 001279 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1108)
Q Consensus 466 ~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1108)
.+++++++. +++|+.||.|++||+..+.+. ..+.+|..+|++++|+
T Consensus 189 ----------------------~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 189 ----------------------HLAVVDDGH-FISCSNDGLIKLVDMHTGDVL-----------RTYEGHESFVYCIKLL 234 (313)
T ss_dssp ----------------------EEEEEETTE-EEEEETTSEEEEEETTTCCEE-----------EEEECCSSCEEEEEEC
T ss_pred ----------------------EEEEcCCCe-EEEccCCCeEEEEECCchhhh-----------hhhhcCCceEEEEEEe
Confidence 113345555 889999999999999987754 3466899999999999
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCC
Q 001279 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1108)
Q Consensus 546 ~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG 625 (1108)
|++ .|++++.||.|++|++... .+...+..|...|++++|+|+++ +++|+.||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg 287 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENG-------------------------SLKQVITLPAISIWSVDCMSNGD-IIVGSSDN 287 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTC-------------------------CEEEEEECSSSCEEEEEECTTSC-EEEEETTS
T ss_pred cCC-CEEEEecCCEEEEEECCCC-------------------------ceeEEEeccCceEEEEEEccCCC-EEEEeCCC
Confidence 999 6899999999999998775 25667788999999999999998 56799999
Q ss_pred eEEEEEccCceEE
Q 001279 626 RVAVLDMNLLSVL 638 (1108)
Q Consensus 626 ~V~vwd~~~~~~~ 638 (1108)
.|++||+.++..+
T Consensus 288 ~i~iw~~~~~~~~ 300 (313)
T 3odt_A 288 LVRIFSQEKSRWA 300 (313)
T ss_dssp CEEEEESCGGGCC
T ss_pred cEEEEeCCCCcee
Confidence 9999999988665
No 70
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=2.2e-28 Score=307.03 Aligned_cols=207 Identities=15% Similarity=0.162 Sum_probs=173.2
Q ss_pred eeCCCCCceEEEEcCCC-CEEEEEECCCcEEEEecCCc------ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 001279 31 HYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~-~~LA~Gs~dG~I~iw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1108)
..||...|++++|+|++ .+||+|+.||.|+||++... ....+.+|...|.+++|+|++.+|++++.|++|+||
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 45999999999999875 79999999999999998542 233567899999999999999999999999999999
Q ss_pred EcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 104 d~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
|+.++..+..+ .|...|++++|+|++++|++|+.|++|+||+... .... .+... ...+...|.++
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~--~~~~----~~~~~--------~~~h~~~v~~~ 523 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG--ECKY----TISEG--------GEGHRDWVSCV 523 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEE----EECSS--------TTSCSSCEEEE
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC--Ccce----eeccC--------CCCCCCcEEEE
Confidence 99999887766 7889999999999999999999999999998642 1211 12110 01223789999
Q ss_pred ecccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC
Q 001279 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1108)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1108)
+|+|......|++++.|++|++||+.+.+... +.+| ...|++++|. |+
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h------------------------------~~~v~~v~~s-pd 572 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH------------------------------TGYVSTVAVS-PD 572 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC------------------------------SSCEEEEEEC-TT
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEe-CC
Confidence 99996445679999999999999999987654 4455 7789999985 99
Q ss_pred CCEEEEEEccCcEEEEecCCC
Q 001279 262 GSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~ 282 (1108)
|++|++|+.||.|++||+.++
T Consensus 573 g~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 573 GSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp SSEEEEEETTSBCEEEETTTT
T ss_pred CCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999998654
No 71
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=5.1e-28 Score=280.40 Aligned_cols=164 Identities=10% Similarity=0.153 Sum_probs=137.5
Q ss_pred EeCCCCCCEEEEEEeeCC-CEEEEEeCCCcEEEEEcCCCeeeeee---cCCCCeeEEEEec-CCCEEEEEeCCCcEEEEE
Q 001279 71 LISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVIS-GSHFMYIGDENGLMSVIK 145 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I~vWd~~s~~~~~~~---~~~~~Itsl~~~~-~~~~l~vg~~dg~V~vw~ 145 (1108)
.+.+|..+|.+++|+|++ .+|++++.|+.|+|||+.+++....+ .|...|++++|+| +++++++|+.||.|++|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 567899999999999998 89999999999999999988776665 4889999999999 679999999999999999
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccc
Q 001279 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1108)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~ 225 (1108)
+.. ..+.. +..+. .+...|.+++|+| ++..|++++.||.|++||+....+..+.+|
T Consensus 148 ~~~--~~~~~----~~~~~---------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h------- 203 (383)
T 3ei3_B 148 FSG--SVIQV----FAKTD---------SWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLDGHEIFKEKLH------- 203 (383)
T ss_dssp TTS--CEEEE----EECCC---------CSSCCEEEEEEET--TTTEEEEEETTSEEEEEETTSCEEEEEECS-------
T ss_pred CCC--CceEE----EeccC---------CCCCCeEEEEECC--CCCEEEEECCCCCEEEEECCCCEEEEeccC-------
Confidence 873 22221 22111 1126799999998 688899999999999999976666666666
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEEEEEccCcEEEEecCCC
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~DG~I~lWd~~~~ 282 (1108)
...|++++|. |++. +|++|+.||.|++||+.+.
T Consensus 204 -----------------------~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~ 237 (383)
T 3ei3_B 204 -----------------------KAKVTHAEFN-PRCDWLMATSSVDATVKLWDLRNI 237 (383)
T ss_dssp -----------------------SSCEEEEEEC-SSCTTEEEEEETTSEEEEEEGGGC
T ss_pred -----------------------CCcEEEEEEC-CCCCCEEEEEeCCCEEEEEeCCCC
Confidence 7889999986 9998 9999999999999998643
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=4e-28 Score=278.33 Aligned_cols=233 Identities=8% Similarity=0.133 Sum_probs=167.7
Q ss_pred eeeeCCCCCceEEEEcCC----CCEEEEEECCCcEEEEecCCcceE-Ee-----CCCCCCEEEEEEeeC----CCEEEEE
Q 001279 29 AVHYGIPATASILAFDHI----QRLLAIATLDGRIKVIGGDGIEGL-LI-----SPSQLPYKNLEFLQN----QGFLISI 94 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~----~~~LA~Gs~dG~I~iw~~~~~~~~-~~-----~~h~~~V~~l~fs~d----~~~L~S~ 94 (1108)
....||...|.+++|+|+ ..++++++.++.|+||+....+.+ .. ..|...|.+++|+|+ +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 566799999999999994 556666666789999999754332 22 237789999999999 6799999
Q ss_pred eCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001279 95 TNDNEIQVWSLESRSLACCL-KWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1108)
Q Consensus 95 s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~-~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1108)
+.|+.|++||+.+++.+..+ .|...|++++|+| ++++|++|+.||.|++|++.. ++....-..+..|.
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~-------- 161 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT--DTLVAIFGGVEGHR-------- 161 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT--TEEEEEECSTTSCS--------
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec--CeEEEEeccccccc--------
Confidence 99999999999999888877 4889999999999 899999999999999999864 34432200013444
Q ss_pred CCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCC-CcccccccccCCCCCCCCCcccCcCCCCCCCCc
Q 001279 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG-KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1108)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1108)
..|.+++|+| ++.+|++++.||.|++||+.+++....... ..+....... +................+...
T Consensus 162 ----~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 162 ----DEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR--PFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp ----SCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS--CCCCEEECCCSEEECSSCSSC
T ss_pred ----CceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc--cccceeeccCccccccCCcce
Confidence 7899999998 688899999999999999988654321100 0000000000 000000000001111224788
Q ss_pred eeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 252 ISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
|++++|. +.+|++++.||.|++||+.+.
T Consensus 234 v~~~~~~---~~~l~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 234 VDCVRWL---GDLILSKSCENAIVCWKPGKM 261 (366)
T ss_dssp CCEEEEE---TTEEEEECSSSEEEEEEESST
T ss_pred EEEEEEc---CCEEEEEecCCEEEEEeCCCc
Confidence 9999985 779999999999999998754
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.9e-27 Score=276.70 Aligned_cols=165 Identities=14% Similarity=0.121 Sum_probs=122.7
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccC---C---CCCeEEEEEEeCCCeEEEEecC---ceE
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAG---S---RAPVSTLSFCFINSSLAVGNEF---GLV 560 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~---h---~~~Vt~lafs~d~~~Lasg~~d---G~V 560 (1108)
++++++ ++++|+.||.|++||+..+.+. ..+.. | ...|++++|+|++++|++++.| |.|
T Consensus 193 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i 260 (397)
T 1sq9_A 193 DISERG-LIATGFNNGTVQISELSTLRPL-----------YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 260 (397)
T ss_dssp EECTTS-EEEEECTTSEEEEEETTTTEEE-----------EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred EECCCc-eEEEEeCCCcEEEEECCCCcee-----------EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceE
Confidence 344555 6677777777777777655433 12334 6 7789999999999999999999 999
Q ss_pred EEEEecCCCCCccccccccCccceeecccCCcceEEEEEee-------------cCcCEEEEEEcCCCCEEEEEeCCCeE
Q 001279 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-------------VNSPVRALQFTSSGAKLAVGFECGRV 627 (1108)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------h~~~Vtslafspdg~~LavGs~dG~V 627 (1108)
++|++... .++..+.. |...|++++|+|++++|++|+.||.|
T Consensus 261 ~i~d~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 261 TLYETEFG-------------------------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEEETTTC-------------------------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEEECCCC-------------------------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 99999765 23455566 99999999999999999999999999
Q ss_pred EEEEccCceEEEEeecC---CCC---------------CCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEc
Q 001279 628 AVLDMNLLSVLFFTDDI---SGS---------------SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 689 (1108)
Q Consensus 628 ~vwd~~~~~~~~~~~~~---~~h---------------~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s 689 (1108)
+|||+.+++.+...... .+| ..+|.+++|++..... ...+.+..+|++++
T Consensus 316 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~------------~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 316 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS------------GMGADLNESLCCVC 383 (397)
T ss_dssp EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB------------STTCTTSCEEEEEE
T ss_pred EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc------------cccccccceEEEec
Confidence 99999999887554410 046 9999999999431000 00000127899999
Q ss_pred CCccEEEEeCCCcc
Q 001279 690 KDAKISIVGGSSEN 703 (1108)
Q Consensus 690 ~Dg~v~v~d~~~g~ 703 (1108)
.||.|.+||..+|+
T Consensus 384 ~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 384 LDRSIRWFREAGGK 397 (397)
T ss_dssp TTTEEEEEEEEC--
T ss_pred CCCcEEEEEcCCCC
Confidence 99999999988764
No 74
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=8.4e-28 Score=274.76 Aligned_cols=308 Identities=15% Similarity=0.208 Sum_probs=222.3
Q ss_pred cCCCCeeEEEEecCCC-EEEEEeC---CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC-C
Q 001279 115 KWESNITAFSVISGSH-FMYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-S 189 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~-~l~vg~~---dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-~ 189 (1108)
.|...|++++|+|++. ++++|+. ||.|+||+++.. .+... . ..+|. ..|.+++|+|.. +
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~--~~~~~-~-~~~~~------------~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG--DLKLL-R-EIEKA------------KPIKCGTFGATSLQ 79 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS--SEEEE-E-EEEES------------SCEEEEECTTCCTT
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC--cccce-e-eeccc------------CcEEEEEEcCCCCC
Confidence 5889999999999986 5556665 999999999853 33211 1 11333 789999999942 1
Q ss_pred CCEEEEEECCCeEEEEEccCCe-E-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEee-----cCCC
Q 001279 190 GNRVLIAYENALVILWDVSEAQ-I-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA-----SSSG 262 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~-----spdg 262 (1108)
+.+|++++.||.|++||+.+++ . ..+.+| ...|++++|. +|++
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~s~~~ 129 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGH------------------------------KEIINAIDGIGGLGIGEGA 129 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCC------------------------------SSCEEEEEEESGGGCC-CC
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEec------------------------------ccceEEEeeccccccCCCc
Confidence 6779999999999999999875 3 344455 7789999763 4899
Q ss_pred CEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcce
Q 001279 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1108)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ 342 (1108)
..|++++.||.|++||+.+.... +..+....+ .
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~~~~----------~~~~~~~~~------------------------------~------- 162 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQKDDP----------VANMEPVQG------------------------------E------- 162 (357)
T ss_dssp CEEEEEETTSCEEEECTTSCSSC----------SEEECCCTT------------------------------S-------
T ss_pred cEEEEEeCCCeEEEEeCCCCCCc----------ceeccccCC------------------------------C-------
Confidence 99999999999999999754210 000000000 0
Q ss_pred EEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCC
Q 001279 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1108)
Q Consensus 343 ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 422 (1108)
T Consensus 163 -------------------------------------------------------------------------------- 162 (357)
T 3i2n_A 163 -------------------------------------------------------------------------------- 162 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEe
Q 001279 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1108)
Q Consensus 423 ~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs 502 (1108)
....+.+..+. .+++++++++++|+
T Consensus 163 ----------~~~~v~~~~~~---------------------------------------------~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 163 ----------NKRDCWTVAFG---------------------------------------------NAYNQEERVVCAGY 187 (357)
T ss_dssp ----------CCCCEEEEEEE---------------------------------------------CCCC-CCCEEEEEE
T ss_pred ----------CCCceEEEEEE---------------------------------------------eccCCCCCEEEEEc
Confidence 00001111110 03667888999999
Q ss_pred cCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEe---CCCeEEEEecCceEEEEEecCCCCCcccccccc
Q 001279 503 HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF---INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 579 (1108)
Q Consensus 503 ~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~---d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~ 579 (1108)
.||.|++||+..+.+. ....|...|++++|+| ++.+|++++.||.|++|++........
T Consensus 188 ~d~~i~i~d~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------ 249 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALR------------WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG------ 249 (357)
T ss_dssp TTSEEEEEETTTTEEE------------EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE------
T ss_pred cCCeEEEEECccCcee------------eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc------
Confidence 9999999999987753 1345778999999999 999999999999999999987522100
Q ss_pred CccceeecccCCcceEEEEEeecCcCEEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEE----------------EEee
Q 001279 580 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA-KLAVGFECGRVAVLDMNLLSVL----------------FFTD 642 (1108)
Q Consensus 580 ~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~-~LavGs~dG~V~vwd~~~~~~~----------------~~~~ 642 (1108)
.....+..|...|++++|+|+++ +|++|+.||.|++||+..+... ....
T Consensus 250 --------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 250 --------------FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp --------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred --------------eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 01224458999999999999998 8999999999999999854211 1223
Q ss_pred cCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEE-EEcCCccEEEEeCCCcce
Q 001279 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII-VLFKDAKISIVGGSSENM 704 (1108)
Q Consensus 643 ~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~-s~s~Dg~v~v~d~~~g~~ 704 (1108)
.+.+|..+|.+++|+ |++.+|+ +++.|+.|++||..+++.
T Consensus 316 ~~~~~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 316 NVTLSTQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccCCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECCCccc
Confidence 456799999999999 4466677 899999999999987654
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-28 Score=289.31 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=164.2
Q ss_pred eCCCCCceEEEEcC-CCCEEEEEECCCcEEEEecCC---c---ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001279 32 YGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDG---I---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1108)
Q Consensus 32 ~G~~~~is~la~sp-~~~~LA~Gs~dG~I~iw~~~~---~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd 104 (1108)
.||.+.|++++|+| ++.+||+|+.||.|+||+... . .......|..+|.+++|+|++.+|++++.|+.|++||
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLK 139 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 58899999999999 999999999999999999854 2 2233446999999999999999999999999999999
Q ss_pred cC---CCeeeee--------ec-----CCCCeeEEE--EecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecc--cc
Q 001279 105 LE---SRSLACC--------LK-----WESNITAFS--VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISA--DA 164 (1108)
Q Consensus 105 ~~---s~~~~~~--------~~-----~~~~Itsl~--~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~--~~ 164 (1108)
+. +++.... +. +...++++. ++++++++++|+.||.|++|++.. ++... .+.. |.
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~---~~~~~~h~ 214 (437)
T 3gre_A 140 VNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT--LERLQ---IIENSPRH 214 (437)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT--CCEEE---EEECCGGG
T ss_pred eccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CeeeE---EEccCCCC
Confidence 95 4433322 21 456677777 557899999999999999999864 34432 2443 44
Q ss_pred cccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe--CCCcccccccccCCCCCCCCCcccCc
Q 001279 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1108)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1108)
..|++++|+| ++.+|++++.||.|++||+.+++.+... +|
T Consensus 215 ------------~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------ 256 (437)
T 3gre_A 215 ------------GAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD------------------------ 256 (437)
T ss_dssp ------------CCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTT------------------------
T ss_pred ------------CceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCC------------------------
Confidence 7899999998 6888999999999999999998876654 33
Q ss_pred CCCCCCCCceeEEEee---cCCCCEEEEEEccCcEEEEecCCC
Q 001279 243 SEHQPEEKEISALCWA---SSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 243 ~~~~~~~~~Vtsl~w~---spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...|++++|. ++++.+|++|+.||.|++||+.++
T Consensus 257 ------~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 257 ------HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp ------CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred ------CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 5679999765 256889999999999999999754
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=7.5e-28 Score=280.48 Aligned_cols=363 Identities=14% Similarity=0.109 Sum_probs=234.0
Q ss_pred CCcEEEEecCC-cceEEeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEEcCCCeeeeeec--------------CCCC
Q 001279 56 DGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSLACCLK--------------WESN 119 (1108)
Q Consensus 56 dG~I~iw~~~~-~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd~~s~~~~~~~~--------------~~~~ 119 (1108)
++.+++|+.+. ........|.++|++++|+| ++.+|++++.|+.|++||+.++.....+. |...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 34567777753 34446667999999999999 99999999999999999999886654443 7889
Q ss_pred eeEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC-CCCEEEEEE
Q 001279 120 ITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-SGNRVLIAY 197 (1108)
Q Consensus 120 Itsl~~~~-~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-~~~~ll~~~ 197 (1108)
|++++|+| ++.++++|+.||.|++|+++. +..... +. +. ..+.++.|+|.. ++..+++++
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~---~~-~~------------~~~~~~~~~~~~~~~~~~~~~~ 163 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNT--LQTADV---FN-FE------------ETVYSHHMSPVSTKHCLVAVGT 163 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTT--TEEEEE---EE-CS------------SCEEEEEECSSCSSCCEEEEEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCC--Ccccee---cc-CC------------CceeeeEeecCCCCCcEEEEEc
Confidence 99999999 778999999999999999874 344322 21 11 668999998843 455799999
Q ss_pred CCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEEEEEccCcEE
Q 001279 198 ENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDIL 275 (1108)
Q Consensus 198 ~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~DG~I~ 275 (1108)
.+|.|++||+.+++... +.+| ...|++++|. |++. .|++|+.||.|+
T Consensus 164 ~~~~v~~~d~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 164 RGPKVQLCDLKSGSCSHILQGH------------------------------RQEILAVSWS-PRYDYILATASADSRVK 212 (408)
T ss_dssp SSSSEEEEESSSSCCCEEECCC------------------------------CSCEEEEEEC-SSCTTEEEEEETTSCEE
T ss_pred CCCeEEEEeCCCcceeeeecCC------------------------------CCcEEEEEEC-CCCCcEEEEEcCCCcEE
Confidence 99999999999886544 3334 7789999986 9988 589999999999
Q ss_pred EEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccccccc
Q 001279 276 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 355 (1108)
Q Consensus 276 lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~ 355 (1108)
+||+....... ..+..... ... .
T Consensus 213 i~d~~~~~~~~----------~~~~~~~~------------------------------~~~-----------------~ 235 (408)
T 4a11_B 213 LWDVRRASGCL----------ITLDQHNG------------------------------KKS-----------------Q 235 (408)
T ss_dssp EEETTCSSCCS----------EECCTTTT------------------------------CSC-----------------C
T ss_pred EEECCCCCccc----------cccccccc------------------------------ccc-----------------e
Confidence 99997542110 00000000 000 0
Q ss_pred ccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCC
Q 001279 356 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 435 (1108)
Q Consensus 356 ~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (1108)
. ..
T Consensus 236 ~---------------------------------------------------------------------~~-------- 238 (408)
T 4a11_B 236 A---------------------------------------------------------------------VE-------- 238 (408)
T ss_dssp C---------------------------------------------------------------------TT--------
T ss_pred e---------------------------------------------------------------------ec--------
Confidence 0 00
Q ss_pred cceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCC
Q 001279 436 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 515 (1108)
Q Consensus 436 ~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~ 515 (1108)
....++...+..++++|+++++++|+.||.|++||+..+
T Consensus 239 -----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 239 -----------------------------------------SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp -----------------------------------------TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred -----------------------------------------cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 000111122233467788889999999999999999987
Q ss_pred ceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceE
Q 001279 516 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 595 (1108)
Q Consensus 516 ~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 595 (1108)
......... . .......+........+..+++++.+|.|++|++... .+
T Consensus 278 ~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------------------~~ 326 (408)
T 4a11_B 278 ENTLVNYGK--V----CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-------------------------EQ 326 (408)
T ss_dssp CBCCCCCCC--C----CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-------------------------CE
T ss_pred ccceecccc--c----cccccccceeEEecCCCceEEEEecCCEEEEEECcCC-------------------------cc
Confidence 643211110 0 0111122333333445667788888999999999775 25
Q ss_pred EEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCC
Q 001279 596 RAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSERE 675 (1108)
Q Consensus 596 ~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~ 675 (1108)
+..+..|...|++++|+|++++|++|+.||.|++||+..++.+..... +. ....+.+
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~---~~~~~~~----------------- 383 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE---TT---TKSQLNP----------------- 383 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc---eE---ecccccc-----------------
Confidence 677889999999999999999999999999999999999876622111 11 1112221
Q ss_pred CCCCCCccEEEEEcCCccEEEEeCC
Q 001279 676 VPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 676 ~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
.......+.+.|+.+.+|+..
T Consensus 384 ----~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 384 ----AFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -------------------------
T ss_pred ----ccceeecccCccCceeecCCc
Confidence 123446677889999999864
No 77
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=2.2e-27 Score=297.90 Aligned_cols=293 Identities=17% Similarity=0.219 Sum_probs=220.9
Q ss_pred cCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 115 KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.|...|+++++++++ ++|++|+.||+|++|++.............+.+|. ..|.+++|+| ++.+|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~------------~~v~~v~~s~--~g~~l 445 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS------------HFVEDVVLSS--DGQFA 445 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS------------SCEEEEEECT--TSSEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC------------CcEEEEEECC--CCCEE
Confidence 688999999999875 79999999999999998754322111113356665 7899999988 78889
Q ss_pred EEEECCCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC
Q 001279 194 LIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG 272 (1108)
++|+.||+|+|||+.+++... +.+| ...|++++|. |++++|++|+.||
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h------------------------------~~~v~~~~~s-~~~~~l~s~s~D~ 494 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTRRFVGH------------------------------TKDVLSVAFS-LDNRQIVSASRDR 494 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEETTS
T ss_pred EEEeCCCcEEEEECCCCcceeEEeCC------------------------------CCCEEEEEEe-CCCCEEEEEeCCC
Confidence 999999999999999987654 4566 7889999985 9999999999999
Q ss_pred cEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccc
Q 001279 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1108)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1108)
+|++||..... .. .+ . . .+..
T Consensus 495 ~i~iwd~~~~~------------~~--------------~~--~------~---------~~~~---------------- 515 (694)
T 3dm0_A 495 TIKLWNTLGEC------------KY--------------TI--S------E---------GGEG---------------- 515 (694)
T ss_dssp CEEEECTTSCE------------EE--------------EE--C------S---------STTS----------------
T ss_pred EEEEEECCCCc------------ce--------------ee--c------c---------CCCC----------------
Confidence 99999974210 00 00 0 0 0000
Q ss_pred cccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccC
Q 001279 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1108)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1108)
T Consensus 516 -------------------------------------------------------------------------------- 515 (694)
T 3dm0_A 516 -------------------------------------------------------------------------------- 515 (694)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCC--cEEEEEecCCcEEEE
Q 001279 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD--RVYLAGYHDGSVRIW 510 (1108)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~--~llatgs~DGtVriW 510 (1108)
|...|++. ++++++ .++++|+.||+|++|
T Consensus 516 h~~~v~~~-------------------------------------------------~~~~~~~~~~l~s~s~d~~v~vw 546 (694)
T 3dm0_A 516 HRDWVSCV-------------------------------------------------RFSPNTLQPTIVSASWDKTVKVW 546 (694)
T ss_dssp CSSCEEEE-------------------------------------------------EECSCSSSCEEEEEETTSCEEEE
T ss_pred CCCcEEEE-------------------------------------------------EEeCCCCcceEEEEeCCCeEEEE
Confidence 11112222 222222 379999999999999
Q ss_pred eCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccC
Q 001279 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1108)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1108)
|+....+. ..+.+|...|++++|+|++++|++|+.||.|+||++....
T Consensus 547 d~~~~~~~-----------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~--------------------- 594 (694)
T 3dm0_A 547 NLSNCKLR-----------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--------------------- 594 (694)
T ss_dssp ETTTCCEE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE---------------------
T ss_pred ECCCCcEE-----------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------------------
Confidence 99987755 4577899999999999999999999999999999997751
Q ss_pred CcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecC----------------CCCCCceEEE
Q 001279 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI----------------SGSSSPIISM 654 (1108)
Q Consensus 591 ~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~----------------~~h~~~V~~l 654 (1108)
++..+ .+...|++++|+|++.+|++++++ .|+|||+.++.++.....- ..+...|.++
T Consensus 595 ----~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 595 ----KLYSL-EANSVIHALCFSPNRYWLCAATEH-GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp ----EEECC-BCSSCEEEEEECSSSSEEEEEETT-EEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred ----eEEEe-cCCCcEEEEEEcCCCcEEEEEcCC-CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 22323 346789999999999988888755 5999999999887543210 0112236788
Q ss_pred EeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCC
Q 001279 655 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1108)
Q Consensus 655 ~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~ 700 (1108)
+|+ |++.+|++|+.||+|++||..
T Consensus 669 ~~s----------------------pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 669 NWS----------------------ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred EEc----------------------CCCCEEEEEcCCCeEEEEecc
Confidence 888 668999999999999999974
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=2.4e-27 Score=278.63 Aligned_cols=151 Identities=16% Similarity=0.270 Sum_probs=125.8
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEecCCcceE---EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~---~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
.++|+||++ .+||+|. |+.|+|||..+.++. ....|...|++|+|+|+|.+|++++.|++|+|||+++++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 467999975 5999987 899999999766543 34568889999999999999999999999999999999988777
Q ss_pred -cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 115 -~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.|...|.+++++ +.++++|+.|+.+++|+.......+. .+.+|. ..+..+.|+| ++.++
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~----~~~~h~------------~~~~~~~~~~--~g~~l 245 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVA----TLSGHS------------QEVCGLRWAP--DGRHL 245 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE----EEECCS------------SCEEEEEECT--TSSEE
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeE----Eecccc------------cceeeeeecC--CCCee
Confidence 678889888775 67999999999999999765433322 245555 7799999988 68889
Q ss_pred EEEECCCeEEEEEccCC
Q 001279 194 LIAYENALVILWDVSEA 210 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~ 210 (1108)
++++.|+.|++||..++
T Consensus 246 ~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp EEEETTSCEEEEESSCC
T ss_pred eeeeccccceEEeeccc
Confidence 99999999999997664
No 79
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=2.2e-28 Score=288.96 Aligned_cols=164 Identities=13% Similarity=0.202 Sum_probs=130.3
Q ss_pred EeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEEcCCCeeee---eecCCCCeeEEEEec-CCCEEEEEeCCCcEEEEE
Q 001279 71 LISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSLAC---CLKWESNITAFSVIS-GSHFMYIGDENGLMSVIK 145 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd~~s~~~~~---~~~~~~~Itsl~~~~-~~~~l~vg~~dg~V~vw~ 145 (1108)
...+|...|++|+|+| ++.+|++++.||+|+|||+.++.... ...|.+.|++++|+| ++++|++|+.||+|+||+
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3456888999999999 56789999999999999998875433 336889999999998 678999999999999999
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccc
Q 001279 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1108)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~ 225 (1108)
+.. +.+.. + ...+. ....++++.|+| ++.+|++|+.||.|++||+++..+..+.+|
T Consensus 194 ~~~--~~~~~--~-~~~~~----------~~~~~~~~~~~~--~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h------- 249 (435)
T 4e54_B 194 FKG--NILRV--F-ASSDT----------INIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDGKELWNLRMH------- 249 (435)
T ss_dssp TTS--CEEEE--E-ECCSS----------CSCCCCCEEEET--TTTEEEEECSSSBEEEEESSSCBCCCSBCC-------
T ss_pred ccC--CceeE--E-eccCC----------CCccEEEEEECC--CCCEEEEEeCCCcEeeeccCcceeEEEecc-------
Confidence 863 22221 1 11111 125688999988 788899999999999999987655444455
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEEEEEccCcEEEEecCCC
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~DG~I~lWd~~~~ 282 (1108)
...|++++|. |++. +|++|+.||.|++||+.+.
T Consensus 250 -----------------------~~~v~~v~~~-p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 250 -----------------------KKKVTHVALN-PCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp -----------------------SSCEEEEEEC-TTCSSEEEEEETTSBCCEEETTTC
T ss_pred -----------------------cceEEeeeec-CCCceEEEEecCcceeeEEecccc
Confidence 7789999986 8876 7889999999999998654
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.2e-28 Score=282.66 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=127.8
Q ss_pred CCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC--eeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001279 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1108)
Q Consensus 74 ~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~--~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~ 150 (1108)
.|.++|++++|+|++.+|++++.|+.|++||+.++ +.+..+ .|...|++++|+|++++|++|+.||.|++|++....
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 36679999999999999999999999999999988 565555 688999999999999999999999999999987633
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE----EEEeC-CCcccccc
Q 001279 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI----IFVGG-GKDLQLKD 225 (1108)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~----~~~~~-~~~~~~~~ 225 (1108)
.... ...+..|. ..|.+++|+| ++.+|++++.|+.|++||+.+++. ..+.+ |
T Consensus 89 -~~~~-~~~~~~~~------------~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h------- 145 (377)
T 3dwl_C 89 -TWKQ-TLVLLRLN------------RAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL------- 145 (377)
T ss_dssp -CCCC-EEECCCCS------------SCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSC-------
T ss_pred -ceee-eeEecccC------------CceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc-------
Confidence 0111 12344454 7899999998 677899999999999999998762 33333 3
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...|++++|. |++++|++++.||.|++||+...
T Consensus 146 -----------------------~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 146 -----------------------RSTILSLDWH-PNNVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp -----------------------CSCEEEEEEC-TTSSEEEEEESSSCEEEEEECCS
T ss_pred -----------------------CCCeEEEEEc-CCCCEEEEEeCCCEEEEEEEEec
Confidence 7789999986 99999999999999999999654
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=6.6e-29 Score=287.06 Aligned_cols=224 Identities=12% Similarity=0.116 Sum_probs=162.5
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~ 106 (1108)
.|..+.+.|.+++|+|++++||+|+.||.|+||+.... ....+..|..+|.+++|+|++.+|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34456778999999999999999999999999999764 334566899999999999999999999999999999999
Q ss_pred CCe----eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCe-eeeeceeecc-cccccccCCCCCCCCCeE
Q 001279 107 SRS----LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK-LFQLPYNISA-DALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 107 s~~----~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~-l~~~~~~i~~-~~~~~~~~~~~~~~~~V~ 180 (1108)
+++ ......|...|++++|+|++++|++|+.||.|++|+++..... +. ..+.. |. ..|.
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~h~------------~~v~ 150 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS---KHLKRPLR------------STIL 150 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC---EEECSSCC------------SCEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee---eEeecccC------------CCeE
Confidence 887 3334478899999999999999999999999999998753210 11 22443 44 7899
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
+++|+| ++.+|++++.||.|++||+............ . -+.....+..+..- .+...|++++|. |
T Consensus 151 ~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~-~~~~~v~~~~~s-p 215 (377)
T 3dwl_C 151 SLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEAS--V---------WGSRLPFNTVCAEY-PSGGWVHAVGFS-P 215 (377)
T ss_dssp EEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSC--S---------SCSCCCEEEEEECC-CCSSSEEEEEEC-T
T ss_pred EEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCcccc--c---------cccccchhhhhhcc-cCCceEEEEEEC-C
Confidence 999998 6888999999999999999643211100000 0 00000000000000 227789999985 9
Q ss_pred CCCEEEEEEccCcEEEEecCCCC
Q 001279 261 SGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
+|++|++++.||.|++||+.++.
T Consensus 216 ~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 216 SGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp TSSCEEEEETTTEEC-CEECSTT
T ss_pred CCCEEEEEeCCCcEEEEECCCCC
Confidence 99999999999999999998653
No 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.1e-29 Score=291.41 Aligned_cols=193 Identities=10% Similarity=0.068 Sum_probs=148.1
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
.-+...|.+++|+|||+++|+|+.|++|+ +....+.+ .+|...|.+++|+|+| .++.+.+|+.+....+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~ 80 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL 80 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEeCCCceEe
Confidence 34567899999999999999999999999 65443333 6899999999999998 5777777776544433
Q ss_pred eeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 112 CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 112 ~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
.+.+...|++++|+|++.+||+++.||.|+||+.+ + +.. .+. |.. ......|.+++|+| +|.
T Consensus 81 -~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~---~-~l~---~l~-~~~-------~~~~~sv~svafSP--DG~ 142 (588)
T 2j04_A 81 -NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN---K-MLT---NLD-SKG-------NLSSRTYHCFEWNP--IES 142 (588)
T ss_dssp -TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT---E-EEE---ECC-CSS-------CSTTTCEEEEEECS--SSS
T ss_pred -ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC---c-eee---ecc-CCC-------ccccccEEEEEEcC--CCC
Confidence 33557889999999999999999999999999943 2 322 133 320 00013599999999 799
Q ss_pred EEEEEECCCeEEEEEccCCeE--------EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC
Q 001279 192 RVLIAYENALVILWDVSEAQI--------IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1108)
Q Consensus 192 ~ll~~~~dg~V~lWdl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1108)
+|++|+.||+|+|||+.++++ ..+..+. ..+...|.+++|. |||
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~--------------------------~gh~~~V~sVawS-Pdg- 194 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD--------------------------AGSKDWVTHIVWY-EDV- 194 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC--------------------------TTCCCCEEEEEEE-TTE-
T ss_pred EEEEEcCCCEEEEEECCCCccccccceeeeeeeccc--------------------------ccccccEEEEEEc-CCc-
Confidence 999999999999999998742 2222220 0116789999996 999
Q ss_pred EEEEEEccCcEEEEecCCC
Q 001279 264 ILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~~ 282 (1108)
+++++.|+++++|++.+.
T Consensus 195 -Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 195 -LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp -EEEEETTCCEEEECCCSS
T ss_pred -EEEEeCCCeEEEEECCCC
Confidence 889999999999998644
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.6e-27 Score=274.45 Aligned_cols=163 Identities=13% Similarity=0.182 Sum_probs=131.7
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE--EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
-|+...+.+.++++++..+++++.||.|+||+....+.. ....|..+|++++|+|++.+|++++.|+.|++||+.+++
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 366666554444444566778889999999999765543 445589999999999999999999999999999999998
Q ss_pred eeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 110 LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 110 ~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
.+..+ .|...|++++| +++++++|+.||.|++|++........ .+.+|. ..|.++.|+|
T Consensus 168 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~------------~~v~~~~~~~-- 227 (401)
T 4aez_A 168 KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG----TLQGHS------------SEVCGLAWRS-- 227 (401)
T ss_dssp EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE----EEECCS------------SCEEEEEECT--
T ss_pred EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee----EEcCCC------------CCeeEEEEcC--
Confidence 88777 68889999999 457999999999999999874332222 244554 7899999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIF 214 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~ 214 (1108)
++.+|++++.||.|++||+.+++...
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~ 253 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKF 253 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccE
Confidence 78889999999999999998876544
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-26 Score=258.14 Aligned_cols=196 Identities=19% Similarity=0.179 Sum_probs=160.5
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~ 108 (1108)
...||...|++++| |++.+||+|+.||.|++|+...... .....|..+|.+++|+|++.+|++++.|+.|++||+...
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 34589999999999 9999999999999999999976554 466678999999999999999999999999999998765
Q ss_pred ---eeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 109 ---SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 109 ---~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
+.+..+ .|...|++++| +++++++|+.||.|++|+ .+... ..+..|. ..|.++.|
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d----~~~~~---~~~~~~~------------~~v~~~~~ 150 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK----EGSLV---YNLQAHN------------ASVWDAKV 150 (313)
T ss_dssp TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE----TTEEE---EEEECCS------------SCEEEEEE
T ss_pred CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc----CCcEE---EecccCC------------CceeEEEE
Confidence 334343 68889999999 577999999999999998 23443 2244554 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEE-EeC-CCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIF-VGG-GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
+|. ++.++++++.||.|++||. .+... ... | ...|++++|. |++
T Consensus 151 ~~~-~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~------------------------------~~~i~~~~~~-~~~ 196 (313)
T 3odt_A 151 VSF-SENKFLTASADKTIKLWQN--DKVIKTFSGIH------------------------------NDVVRHLAVV-DDG 196 (313)
T ss_dssp EET-TTTEEEEEETTSCEEEEET--TEEEEEECSSC------------------------------SSCEEEEEEE-ETT
T ss_pred ccC-CCCEEEEEECCCCEEEEec--CceEEEEeccC------------------------------cccEEEEEEc-CCC
Confidence 885 5677999999999999993 33332 222 3 7789999986 888
Q ss_pred CEEEEEEccCcEEEEecCCC
Q 001279 263 SILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~ 282 (1108)
. +++++.||.|++||+.++
T Consensus 197 ~-~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 197 H-FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp E-EEEEETTSEEEEEETTTC
T ss_pred e-EEEccCCCeEEEEECCch
Confidence 7 999999999999998643
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=8.7e-27 Score=260.16 Aligned_cols=268 Identities=14% Similarity=0.170 Sum_probs=191.5
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|...|++++|+|++++|++|+.|++|+||+++....++. ..+.+|. ++|.+++|+|..++.+|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~---~~l~gH~------------~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI---DTLTGHE------------GPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC---EEECCCS------------SCEEEEEECCGGGCSEEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE---EEEcccc------------CCeEEEEecCCCcCCEEE
Confidence 6888999999999999999999999999999875333333 3366776 889999997643578899
Q ss_pred EEECCCeEEEEEccCCe---EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC--CCEEEEEE
Q 001279 195 IAYENALVILWDVSEAQ---IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd--g~~l~sg~ 269 (1108)
+++.|++|+|||+.+++ ...+.+| ...|.+++|. |+ |.+|++++
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h------------------------------~~~v~~v~~~-p~~~g~~l~s~s 120 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVH------------------------------SASVNSVQWA-PHEYGPMLLVAS 120 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCC------------------------------SSCEEEEEEC-CGGGCSEEEEEE
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecC------------------------------CCceeEEEeC-cCCCCcEEEEEE
Confidence 99999999999998763 2233344 6789999986 87 89999999
Q ss_pred ccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecc
Q 001279 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1108)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~ 349 (1108)
.||.|++||+.+..... .. .+ .+.
T Consensus 121 ~d~~v~~wd~~~~~~~~---------~~--------------~~-------------------~~h-------------- 144 (297)
T 2pm7_B 121 SDGKVSVVEFKENGTTS---------PI--------------II-------------------DAH-------------- 144 (297)
T ss_dssp TTSEEEEEEBCSSSCBC---------CE--------------EE-------------------ECC--------------
T ss_pred CCCcEEEEEecCCCcee---------ee--------------ee-------------------ecc--------------
Confidence 99999999986431000 00 00 000
Q ss_pred ccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCcc
Q 001279 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1108)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1108)
...+..+.+.|... .
T Consensus 145 ------------------~~~v~~~~~~p~~~-------------------~---------------------------- 159 (297)
T 2pm7_B 145 ------------------AIGVNSASWAPATI-------------------E---------------------------- 159 (297)
T ss_dssp ------------------SSCEEEEEECCCC-------------------------------------------------
T ss_pred ------------------cCccceEeecCCcc-------------------c----------------------------
Confidence 00111222222200 0
Q ss_pred ccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEE
Q 001279 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1108)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVri 509 (1108)
..+.. ...+++++|++|+.||+|+|
T Consensus 160 ------------------------------------------------~~~~~-------~~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 160 ------------------------------------------------EDGEH-------NGTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp -----------------------------------------------------------------CCEEEEEETTSCEEE
T ss_pred ------------------------------------------------ccccC-------CCCCCcceEEEEcCCCcEEE
Confidence 00000 01234558999999999999
Q ss_pred EeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC---CeEEEEecCceEEEEEecCCCCCccccccccCccceee
Q 001279 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN---SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1108)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~---~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1108)
||+..+...... ...+.+|...|++++|+|++ .+|++++.||+|+||++......
T Consensus 185 wd~~~~~~~~~~-------~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~--------------- 242 (297)
T 2pm7_B 185 WKYNSDAQTYVL-------ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP--------------- 242 (297)
T ss_dssp EEEETTTTEEEE-------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC---------------
T ss_pred EEEcCCCceEEE-------EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc---------------
Confidence 998765521100 02467999999999999985 89999999999999999764211
Q ss_pred cccCCcceEEEEE--eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001279 587 LPEGKISLCRAVF--SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1108)
Q Consensus 587 ~~~~~g~~~~~~~--~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~ 633 (1108)
.....+ ..|...|++++|+|++++||+|+.||+|+||+..
T Consensus 243 -------~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 243 -------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp -------CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred -------cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 011122 4678899999999999999999999999999986
No 86
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.6e-26 Score=256.73 Aligned_cols=282 Identities=17% Similarity=0.218 Sum_probs=210.7
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee---cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001279 79 YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 79 V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~---~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~ 155 (1108)
...|+||+++ .| +++.|++|+|||+.+++++..+ .|...|++++|+|+++++++|+.||+|++|++.. ++...
T Consensus 28 ~~~l~WS~~~-~l-Avg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~--~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN-VL-AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLR 103 (318)
T ss_dssp CBCEEECTTS-EE-EEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEE
T ss_pred ceEEEECCCC-EE-EEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--ceeEE
Confidence 5779999985 44 4556999999999999887766 4667899999999999999999999999999764 45543
Q ss_pred eceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe--EEEEeCCCcccccccccCCCCC
Q 001279 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSE 233 (1108)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 233 (1108)
.+.+|. ..+.++.+ .+..+++++.++.+++|+..... .....+|
T Consensus 104 ---~~~~h~------------~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 149 (318)
T 4ggc_A 104 ---NMTSHS------------ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGH--------------- 149 (318)
T ss_dssp ---EEECCS------------SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECC---------------
T ss_pred ---EecCcc------------ceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCc---------------
Confidence 355555 66777776 45579999999999999988763 3345555
Q ss_pred CCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEE
Q 001279 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 313 (1108)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~ 313 (1108)
...+.++.|. +++.+|++++.||.|++||+.+++.... .....
T Consensus 150 ---------------~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------------------~~~~~ 192 (318)
T 4ggc_A 150 ---------------SQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWV---------------------PLQTF 192 (318)
T ss_dssp ---------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSC---------------------CSEEE
T ss_pred ---------------cCceEEEEEc-CCCCEEEEEecCcceeEEECCCCccccc---------------------ceeee
Confidence 6778888875 9999999999999999999975421110 00000
Q ss_pred EeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEE
Q 001279 314 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFV 393 (1108)
Q Consensus 314 ~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~v 393 (1108)
. .....+..+.+.|.
T Consensus 193 -------------------~--------------------------------~~~~~v~~~~~~~~-------------- 207 (318)
T 4ggc_A 193 -------------------T--------------------------------QHQGAVKAVAWCPW-------------- 207 (318)
T ss_dssp -------------------C--------------------------------CCCSCEEEEEECTT--------------
T ss_pred -------------------c--------------------------------ccCCceEEEEecCC--------------
Confidence 0 00000001111110
Q ss_pred EcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCc
Q 001279 394 LTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGH 473 (1108)
Q Consensus 394 l~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1108)
T Consensus 208 -------------------------------------------------------------------------------- 207 (318)
T 4ggc_A 208 -------------------------------------------------------------------------------- 207 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEE
Q 001279 474 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1108)
Q Consensus 474 ~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Las 553 (1108)
.+..-.+++|+.|++|++||....... ....|...|..+.|++++..+++
T Consensus 208 ------------------~~~~~~~~~~~~~~~i~lwd~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 208 ------------------QSNVLATGGGTSDRHIRIWNVCSGACL------------SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ------------------STTEEEEEECTTTCEEEEEETTTCCEE------------EEEECSSCEEEEEEETTTTEEEE
T ss_pred ------------------CCcEEEEEecCCCCEEEEEeccccccc------------ccccceeeeeeeeecccccceEE
Confidence 000014567788999999999877644 12345568999999999998877
Q ss_pred Ee--cCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001279 554 GN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1108)
Q Consensus 554 g~--~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd 631 (1108)
++ .||.|+||++.+. .++..+.+|.+.|++|+|+|++++||+|+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~-------------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTM-------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTC-------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCC-------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 55 7999999998765 35778899999999999999999999999999999999
Q ss_pred ccCc
Q 001279 632 MNLL 635 (1108)
Q Consensus 632 ~~~~ 635 (1108)
+...
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 9754
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.9e-26 Score=267.63 Aligned_cols=291 Identities=15% Similarity=0.222 Sum_probs=217.5
Q ss_pred EeCCCCCC--EEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec--CCCCeeEEEEecCCCEEEEEeCCCcEEEEEE
Q 001279 71 LISPSQLP--YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1108)
Q Consensus 71 ~~~~h~~~--V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~--~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~ 146 (1108)
...+|... +.++.|++ ..+++++.|+.|++||+.+++...... +...|++++|+|++++|++|+.||.|++|++
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 33455554 44455554 558899999999999999998876663 6789999999999999999999999999997
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC-Ce-EEEEeCCCccccc
Q 001279 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQ-IIFVGGGKDLQLK 224 (1108)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~-~~-~~~~~~~~~~~~~ 224 (1108)
.. ++... .+.+|. ..|.++.|+ +..|++++.||.|++||+.. .. .....+|
T Consensus 164 ~~--~~~~~---~~~~~~------------~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------ 216 (401)
T 4aez_A 164 ES--QTKLR---TMAGHQ------------ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGH------ 216 (401)
T ss_dssp TT--CCEEE---EECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECC------
T ss_pred cC--CeEEE---EecCCC------------CceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCC------
Confidence 64 33332 255555 789999994 45799999999999999984 33 2334444
Q ss_pred ccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccc
Q 001279 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSA 304 (1108)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~ 304 (1108)
...|++++|. |++.+|++|+.||.|++||+.+
T Consensus 217 ------------------------~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~----------------------- 248 (401)
T 4aez_A 217 ------------------------SSEVCGLAWR-SDGLQLASGGNDNVVQIWDARS----------------------- 248 (401)
T ss_dssp ------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTC-----------------------
T ss_pred ------------------------CCCeeEEEEc-CCCCEEEEEeCCCeEEEccCCC-----------------------
Confidence 6677777765 7777777777777777777642
Q ss_pred cCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCC
Q 001279 305 ERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATV 384 (1108)
Q Consensus 305 ~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~ 384 (1108)
T Consensus 249 -------------------------------------------------------------------------------- 248 (401)
T 4aez_A 249 -------------------------------------------------------------------------------- 248 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccc
Q 001279 385 GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKL 464 (1108)
Q Consensus 385 ~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1108)
T Consensus 249 -------------------------------------------------------------------------------- 248 (401)
T 4aez_A 249 -------------------------------------------------------------------------------- 248 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEE
Q 001279 465 HSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSF 544 (1108)
Q Consensus 465 ~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~laf 544 (1108)
+.+. ..+.+|...|++++|
T Consensus 249 --------------------------------------------------~~~~-----------~~~~~~~~~v~~~~~ 267 (401)
T 4aez_A 249 --------------------------------------------------SIPK-----------FTKTNHNAAVKAVAW 267 (401)
T ss_dssp --------------------------------------------------SSEE-----------EEECCCSSCCCEEEE
T ss_pred --------------------------------------------------CCcc-----------EEecCCcceEEEEEE
Confidence 1111 112345567899999
Q ss_pred EeCCC-eEEEEe--cCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEE-
Q 001279 545 CFINS-SLAVGN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAV- 620 (1108)
Q Consensus 545 s~d~~-~Lasg~--~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~Lav- 620 (1108)
+|++. ++++++ .||.|++|++.... ++..+ .+...|++++|+|++++|++
T Consensus 268 ~p~~~~ll~~~~gs~d~~i~i~d~~~~~-------------------------~~~~~-~~~~~v~~~~~s~~~~~l~~~ 321 (401)
T 4aez_A 268 CPWQSNLLATGGGTMDKQIHFWNAATGA-------------------------RVNTV-DAGSQVTSLIWSPHSKEIMST 321 (401)
T ss_dssp CTTSTTEEEEECCTTTCEEEEEETTTCC-------------------------EEEEE-ECSSCEEEEEECSSSSEEEEE
T ss_pred CCCCCCEEEEecCCCCCEEEEEECCCCC-------------------------EEEEE-eCCCcEEEEEECCCCCeEEEE
Confidence 99775 555554 79999999998651 33444 46788999999999999999
Q ss_pred -EeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 621 -GFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 621 -Gs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
|+.||.|+|||+.++...... .+.+|...|.++.|+ |++.+|++++.||.|++||.
T Consensus 322 ~g~~dg~i~v~~~~~~~~~~~~-~~~~h~~~v~~~~~s----------------------~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 322 HGFPDNNLSIWSYSSSGLTKQV-DIPAHDTRVLYSALS----------------------PDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp ECTTTCEEEEEEEETTEEEEEE-EEECCSSCCCEEEEC----------------------TTSSEEEEECTTSEEEEEEC
T ss_pred eecCCCcEEEEecCCccceeEE-EecCCCCCEEEEEEC----------------------CCCCEEEEEeCCCcEEEEEC
Confidence 669999999999997665332 346799999999999 56889999999999999999
Q ss_pred CCcceecCC
Q 001279 700 SSENMISSS 708 (1108)
Q Consensus 700 ~~g~~l~~~ 708 (1108)
.+|+.+...
T Consensus 379 ~~~~~~~~~ 387 (401)
T 4aez_A 379 YDGDHVKRP 387 (401)
T ss_dssp CC-------
T ss_pred CCCcccccc
Confidence 998877554
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.3e-26 Score=263.47 Aligned_cols=289 Identities=12% Similarity=0.129 Sum_probs=218.3
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe----eeeeecCCCCeeEEEEecCCC-EEEEEeCCCcEEEEE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS----LACCLKWESNITAFSVISGSH-FMYIGDENGLMSVIK 145 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~----~~~~~~~~~~Itsl~~~~~~~-~l~vg~~dg~V~vw~ 145 (1108)
+..+|..+|++++|+|++.+|++++.|+.|++||+.++. ......|...|++++|+|+++ +|++|+.||.|++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345799999999999999999999999999999999887 666668899999999999999 999999999999999
Q ss_pred E-ecCCCeeeeeceeecc--cccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC---------CeEE
Q 001279 146 Y-DADEGKLFQLPYNISA--DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---------AQII 213 (1108)
Q Consensus 146 ~-d~~~~~l~~~~~~i~~--~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~---------~~~~ 213 (1108)
+ +.. ... .+.+ |. ..|.+++|+| +..|++++.|+.|++||+.+ ++.+
T Consensus 86 ~~~~~--~~~----~~~~~~~~------------~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 86 LIGSP--SFQ----ALTNNEAN------------LGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp SSSSS--SEE----ECBSCCCC------------SCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred eccCC--ceE----eccccCCC------------CceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCee
Confidence 8 642 222 2444 54 7899999988 66799999999999999886 3322
Q ss_pred EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC-CCCCCCccCCC
Q 001279 214 FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST-TASTKGQQTGS 292 (1108)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~-~~~~~~~~~~~ 292 (1108)
....| ...|++++|. +++ +++++.||.|++||+.+ .....
T Consensus 145 ~~~~~------------------------------~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~~~~~------ 185 (342)
T 1yfq_A 145 NNTKV------------------------------KNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCEDDNG------ 185 (342)
T ss_dssp SSSSS------------------------------CCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCTTCCC------
T ss_pred eEEee------------------------------CCceEEEEec-CCc--EEEEeCCCeEEEEECCccccccc------
Confidence 21112 6789999986 776 99999999999999875 31000
Q ss_pred CCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccc
Q 001279 293 RNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFA 372 (1108)
Q Consensus 293 ~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~ 372 (1108)
. .. ...
T Consensus 186 ----~--------------~~------------------~~~-------------------------------------- 191 (342)
T 1yfq_A 186 ----T--------------IE------------------ESG-------------------------------------- 191 (342)
T ss_dssp ----E--------------EE------------------ECS--------------------------------------
T ss_pred ----e--------------ee------------------ecC--------------------------------------
Confidence 0 00 000
Q ss_pred eEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCch
Q 001279 373 DMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSS 452 (1108)
Q Consensus 373 ~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~ 452 (1108)
+...+
T Consensus 192 ------------------------------------------------------------~~~~i--------------- 196 (342)
T 1yfq_A 192 ------------------------------------------------------------LKYQI--------------- 196 (342)
T ss_dssp ------------------------------------------------------------CSSCE---------------
T ss_pred ------------------------------------------------------------CCCce---------------
Confidence 00000
Q ss_pred hhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCC-CCcEEEEEecCCcEEEEeCCCC------ceeeEeeecc
Q 001279 453 KGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHS-VDRVYLAGYHDGSVRIWDATYP------VFKLICALDA 525 (1108)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~-~~~llatgs~DGtVriWd~~~~------~l~~~~~l~~ 525 (1108)
..++++| +++++++|+.||.|++||+... .....+....
T Consensus 197 ----------------------------------~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 197 ----------------------------------RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp ----------------------------------EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred ----------------------------------eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence 1114556 6779999999999999999866 3321111110
Q ss_pred ccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeec-Cc
Q 001279 526 EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NS 604 (1108)
Q Consensus 526 ~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-~~ 604 (1108)
.. ..-.+|..+|++++|+|++++|++++.||.|++|++... .++..+..| ..
T Consensus 243 ~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------------------~~~~~~~~~h~~ 295 (342)
T 1yfq_A 243 LN--LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-------------------------KKIKNFAKFNED 295 (342)
T ss_dssp CC--TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------------------EEEEECCCCSSS
T ss_pred cc--ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-------------------------hHhhhhhcccCC
Confidence 00 001134559999999999999999999999999999865 345667788 99
Q ss_pred CEEEEEEcCCCCEEEEEeCCCe-EEEEE
Q 001279 605 PVRALQFTSSGAKLAVGFECGR-VAVLD 631 (1108)
Q Consensus 605 ~Vtslafspdg~~LavGs~dG~-V~vwd 631 (1108)
+|++++ |++++|++|+.||+ .+.+.
T Consensus 296 ~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CceEec--CCCCeEEEEecCCccccccc
Confidence 999999 99999999999998 54444
No 89
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=7.6e-26 Score=260.37 Aligned_cols=157 Identities=10% Similarity=0.019 Sum_probs=124.9
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCc----eEEEEEe
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG----LVYIYNL 565 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG----~V~lw~l 565 (1108)
+++|+++++++++.|+ +++|+...+..... ....+|...|++++|+|++++|++++.|+ .+++|++
T Consensus 183 ~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~---------~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 183 HFSTDGKVVAYITGSS-LEVISTVTGSCIAR---------KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp EECTTSSEEEEECSSC-EEEEETTTCCEEEE---------ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred EEccCCceEEecccee-EEEEEeccCcceee---------eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence 6778888999998665 55555554442211 22457888999999999999999999887 5777777
Q ss_pred cCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCC
Q 001279 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1108)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~ 645 (1108)
...... ......+..|...|++|+|||+|++||+|+.||+|+|||+.+++++.. .+.
T Consensus 253 ~~~~~~---------------------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--~~~ 309 (365)
T 4h5i_A 253 KSGNTS---------------------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--FKQ 309 (365)
T ss_dssp ETTEEE---------------------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--ETT
T ss_pred ccceec---------------------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE--ecC
Confidence 654110 112345678999999999999999999999999999999999988743 356
Q ss_pred CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCC
Q 001279 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1108)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~ 701 (1108)
+|..+|++|+|+ |++.+|++++.|++|+|||...
T Consensus 310 gH~~~V~~v~fS----------------------pdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 310 AHSFAITEVTIS----------------------PDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSSSCEEEEEEC----------------------TTSCEEEEEETTSEEEEEECCT
T ss_pred cccCCEEEEEEC----------------------CCCCEEEEEeCCCeEEEEEcCC
Confidence 899999999999 6789999999999999999753
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=6.3e-27 Score=263.80 Aligned_cols=272 Identities=18% Similarity=0.218 Sum_probs=189.4
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|...|++++|+|++++|++|+.|++|+||++......+. ..+.+|. ..|.+++|+|..++.+|+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~---~~l~gH~------------~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI---ADLRGHE------------GPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE---EEEECCS------------SCEEEEEECCGGGSSCEE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE---EEEcCCC------------ccEEEEEeCCCCCCCEEE
Confidence 6889999999999999999999999999999975322222 3466776 889999997643477799
Q ss_pred EEECCCeEEEEEccCCe---EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC--CCEEEEEE
Q 001279 195 IAYENALVILWDVSEAQ---IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd--g~~l~sg~ 269 (1108)
+++.|++|++||+.++. ...+.+| ...|++++|. |+ |.+|++|+
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h------------------------------~~~V~~v~~~-p~~~g~~lasgs 124 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGH------------------------------DSSVNSVCWA-PHDYGLILACGS 124 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCC------------------------------SSCCCEEEEC-CTTTCSCEEEEC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCC------------------------------CCceEEEEEC-CCCCCcEEEEEc
Confidence 99999999999998863 2334455 7789999986 87 88999999
Q ss_pred ccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecc
Q 001279 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1108)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~ 349 (1108)
.||.|++||+....... .. .....
T Consensus 125 ~D~~i~lwd~~~~~~~~---------~~--~~~~~--------------------------------------------- 148 (316)
T 3bg1_A 125 SDGAISLLTYTGEGQWE---------VK--KINNA--------------------------------------------- 148 (316)
T ss_dssp SSSCEEEEEECSSSCEE---------EC--CBTTS---------------------------------------------
T ss_pred CCCCEEEEecCCCCCcc---------ee--eeecc---------------------------------------------
Confidence 99999999986431000 00 00000
Q ss_pred ccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCcc
Q 001279 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1108)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1108)
....+..+.+.|+.. .|.+. +
T Consensus 149 -----------------h~~~v~~~~~~~~~~---------------~~~~~--~------------------------- 169 (316)
T 3bg1_A 149 -----------------HTIGCNAVSWAPAVV---------------PGSLI--D------------------------- 169 (316)
T ss_dssp -----------------SSSCBCCCEECCCCC---------------C--------------------------------
T ss_pred -----------------ccCCcceEEEccccC---------------Ccccc--c-------------------------
Confidence 000111222222200 00000 0
Q ss_pred ccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEE
Q 001279 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1108)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVri 509 (1108)
...+ ....++++|++|+.||+|+|
T Consensus 170 -----------------------------------------------~~~~---------~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 170 -----------------------------------------------HPSG---------QKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp ------------------------------------------------CCS---------CCCCCCCBEECCBTTSBCCE
T ss_pred -----------------------------------------------cccc---------cCccccceEEEecCCCeEEE
Confidence 0000 11223458999999999999
Q ss_pred EeCCCCc-eeeEeeeccccceeeccCCCCCeEEEEEEeCC----CeEEEEecCceEEEEEecCCCCCccccccccCccce
Q 001279 510 WDATYPV-FKLICALDAEVQGIEVAGSRAPVSTLSFCFIN----SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1108)
Q Consensus 510 Wd~~~~~-l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~----~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~ 584 (1108)
||+.... .... ..+.+|...|++++|+|++ .+|++++.||+|+||++.......
T Consensus 194 Wd~~~~~~~~~~---------~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~------------ 252 (316)
T 3bg1_A 194 WKEEEDGQWKEE---------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT------------ 252 (316)
T ss_dssp EEECTTSCEEEE---------ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC------------
T ss_pred EEeCCCCcccee---------eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc------------
Confidence 9987542 1111 2467899999999999987 789999999999999987631100
Q ss_pred eecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001279 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1108)
Q Consensus 585 ~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~ 633 (1108)
.....+..|...|++++|+|++++||+|+.||+|+||+..
T Consensus 253 ---------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 253 ---------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ---------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ---------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 0112345789999999999999999999999999999976
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=3.5e-26 Score=270.07 Aligned_cols=114 Identities=11% Similarity=0.202 Sum_probs=98.8
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
..+.++...|.|+++ ++++||+|+.||.|++||....+. ....+|..+|.+++| ++.+|++++.|++|++||+.+
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 445577788888877 799999999999999999976554 466789999999999 778999999999999999999
Q ss_pred Ceeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 108 ~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
++.+..+ .|...|++++++ +.++++|+.||.|++|++..
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSS
T ss_pred CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCC
Confidence 9888777 577899999996 46999999999999999864
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.4e-26 Score=271.89 Aligned_cols=211 Identities=16% Similarity=0.266 Sum_probs=161.1
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc------------eEEeCCCC------------CCEEEEEEeeCC--
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIE------------GLLISPSQ------------LPYKNLEFLQNQ-- 88 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~------------~~~~~~h~------------~~V~~l~fs~d~-- 88 (1108)
...|++++|+|++.+||+|+.||.|+||+..... .....+|. .+|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 5789999999999999999999999999997654 34566787 899999999998
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeee-----------------------------------------eecCCCCeeEEEEec
Q 001279 89 GFLISITNDNEIQVWSLESRSLAC-----------------------------------------CLKWESNITAFSVIS 127 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~~~~~-----------------------------------------~~~~~~~Itsl~~~~ 127 (1108)
.+|++++.|+.|++||+.++.... ...|...|++++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 799999999999999998754321 135788999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEecCCCeeeee----ceeecccccccccCCCCCCCCCeEEEecccCCCC-CEEEEEECCCeE
Q 001279 128 GSHFMYIGDENGLMSVIKYDADEGKLFQL----PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG-NRVLIAYENALV 202 (1108)
Q Consensus 128 ~~~~l~vg~~dg~V~vw~~d~~~~~l~~~----~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~-~~ll~~~~dg~V 202 (1108)
++++|++| .||.|++|++.... ..... +..+.+|. ..|.+++|+| ++ .+|++++.||.|
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~------------~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITD-RSFNIVDIKPANMEELT------------EVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEE-EEEEEEECCCSSGGGCC------------CCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CCCEEEEe-CCCeEEEEECCCCC-ceeeeeecccccccccC------------cceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999 79999999987321 11110 00133333 7899999999 55 789999999999
Q ss_pred EEEEccCCeE-----EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEE
Q 001279 203 ILWDVSEAQI-----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1108)
Q Consensus 203 ~lWdl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lW 277 (1108)
++||+.+++. ..+.+|...... ... ..+...|++++|. |+|.+|++++. |.|++|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-------~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iw 311 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNR-----------SFF-------SEIISSISDVKFS-HSGRYMMTRDY-LSVKVW 311 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----C-----------CHH-------HHHTTCEEEEEEC-TTSSEEEEEES-SEEEEE
T ss_pred EEEECcCCccccceeeEeccCCCcccc-----------ccc-------cccCceEEEEEEC-CCCCEEEEeeC-CeEEEE
Confidence 9999998764 333333100000 000 0012489999986 99999999999 999999
Q ss_pred ecCC
Q 001279 278 NTST 281 (1108)
Q Consensus 278 d~~~ 281 (1108)
|+..
T Consensus 312 d~~~ 315 (447)
T 3dw8_B 312 DLNM 315 (447)
T ss_dssp ETTC
T ss_pred eCCC
Confidence 9975
No 93
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=7.7e-26 Score=252.46 Aligned_cols=207 Identities=14% Similarity=0.242 Sum_probs=169.4
Q ss_pred eeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC---cceEEeCCCCCCEEEEEEee--CCCEEEEEeCCCcEEEE
Q 001279 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVW 103 (1108)
Q Consensus 29 ~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~---~~~~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~vW 103 (1108)
....||...|.+++|+|++++||+|+.||.|+||+... .....+.+|.++|.+++|++ ++.+|++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 34568999999999999999999999999999999864 23446778999999999986 37899999999999999
Q ss_pred EcCCCe--eeeee-cCCCCeeEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001279 104 SLESRS--LACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1108)
Q Consensus 104 d~~s~~--~~~~~-~~~~~Itsl~~~~~--~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1108)
|+++++ .+..+ .|...|++++|+|+ +.+|++|+.||.|++|++....... ...+.+|. ..
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~~~~~h~------------~~ 147 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PIIIDAHA------------IG 147 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CEEEECCS------------SC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---eeeeeccc------------Cc
Confidence 999874 33333 57889999999997 8899999999999999987532111 12345554 78
Q ss_pred eEEEecccCC-----------CCCEEEEEECCCeEEEEEccCCe----EE-EEeCCCcccccccccCCCCCCCCCcccCc
Q 001279 179 VVGVLPHPNS-----------SGNRVLIAYENALVILWDVSEAQ----II-FVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1108)
Q Consensus 179 V~~v~f~P~~-----------~~~~ll~~~~dg~V~lWdl~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1108)
|.+++|+|.. ++.+|++|+.|++|+|||+.+++ .. .+.+|
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H------------------------ 203 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH------------------------ 203 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC------------------------
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC------------------------
Confidence 9999999852 25689999999999999998764 22 34455
Q ss_pred CCCCCCCCceeEEEeecCCC---CEEEEEEccCcEEEEecCC
Q 001279 243 SEHQPEEKEISALCWASSSG---SILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 243 ~~~~~~~~~Vtsl~w~spdg---~~l~sg~~DG~I~lWd~~~ 281 (1108)
...|.+++|. |++ .+|++++.||+|++||+..
T Consensus 204 ------~~~V~~v~~s-p~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 204 ------SDWVRDVAWS-PTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ------SSCEEEEEEC-CCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ------CCceEEEEEC-CCCCCceEEEEEECCCcEEEEEeCC
Confidence 7789999986 884 8999999999999999864
No 94
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=8.1e-26 Score=253.86 Aligned_cols=197 Identities=17% Similarity=0.296 Sum_probs=150.0
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEecCCcceE---EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~---~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
.++|+||+++ +||+|. |+.|+|||..+.+.+ ....|...|++++|+|++.+|++++.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4789999986 899986 899999999765543 34568889999999999999999999999999999999988777
Q ss_pred -cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 115 -~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.|...+.++++ .+.++++|+.++.+++|+.......+. .+.+|. ..+..+.++| ++.+|
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~--~~~~l 165 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA----TLSGHS------------QEVCGLRWAP--DGRHL 165 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE----EEECCS------------SCEEEEEECT--TSSEE
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEE----EEcCcc------------CceEEEEEcC--CCCEE
Confidence 56677766554 568999999999999988765332222 244554 7799999987 68889
Q ss_pred EEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EE--EEEEc
Q 001279 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-IL--AVGYI 270 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l--~sg~~ 270 (1108)
++++.||.|++||+.+++....... ........|.+++|. |++. .+ ++++.
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVPLQ-------------------------TFTQHQGAVKAVAWC-PWQSNVLATGGGTS 219 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCCSE-------------------------EECCCCSCEEEEEEC-TTSTTEEEEEECTT
T ss_pred EEEecCcceeEEECCCCccccccee-------------------------eecccCCceEEEEec-CCCCcEEEEEecCC
Confidence 9999999999999987642111000 000116788999986 6554 33 45677
Q ss_pred cCcEEEEecCCC
Q 001279 271 DGDILLWNTSTT 282 (1108)
Q Consensus 271 DG~I~lWd~~~~ 282 (1108)
++.|++||....
T Consensus 220 ~~~i~lwd~~~~ 231 (318)
T 4ggc_A 220 DRHIRIWNVCSG 231 (318)
T ss_dssp TCEEEEEETTTC
T ss_pred CCEEEEEecccc
Confidence 899999998643
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=3.3e-26 Score=260.10 Aligned_cols=202 Identities=16% Similarity=0.082 Sum_probs=166.1
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc----eEEeCCCCCCEEEEEEeeCCC-EEEEEeCCCcEEEEEc-
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSL- 105 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~----~~~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~vWd~- 105 (1108)
.+|...|++++|+|++.+||+|+.||.|+||+..... ......|..+|.+++|+|++. +|++++.|+.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 4788999999999999999999999999999997655 556668999999999999999 9999999999999999
Q ss_pred CCCeeeeeec--CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCee----eeeceeecccccccccCCCCCCCCCe
Q 001279 106 ESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL----FQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 106 ~s~~~~~~~~--~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l----~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
.+++...... |...|++++|+| ++++++++.||.|++|++....+.- ......+. +...|
T Consensus 88 ~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------------~~~~v 153 (342)
T 1yfq_A 88 GSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------------VKNKI 153 (342)
T ss_dssp SSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-------------SCCCE
T ss_pred cCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-------------eCCce
Confidence 8887766567 899999999999 9999999999999999976411110 00001111 22779
Q ss_pred EEEecccCCCCCEEEEEECCCeEEEEEccC-CeE--E-EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEE
Q 001279 180 VGVLPHPNSSGNRVLIAYENALVILWDVSE-AQI--I-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1108)
.+++|+|. + +++++.++.|++||+.+ +.. . ....+ ...|+++
T Consensus 154 ~~~~~~~~--~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------~~~i~~i 199 (342)
T 1yfq_A 154 FTMDTNSS--R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGL------------------------------KYQIRDV 199 (342)
T ss_dssp EEEEECSS--E--EEEEESTTEEEEEESSCCTTCCCEEEECSC------------------------------SSCEEEE
T ss_pred EEEEecCC--c--EEEEeCCCeEEEEECCccccccceeeecCC------------------------------CCceeEE
Confidence 99999873 3 99999999999999987 432 1 22222 6689999
Q ss_pred EeecC-CCCEEEEEEccCcEEEEecCCC
Q 001279 256 CWASS-SGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 256 ~w~sp-dg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+|. | ++.+|++++.||.|++|++...
T Consensus 200 ~~~-~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 200 ALL-PKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEC-SGGGCEEEEEETTSEEEEEECCTT
T ss_pred EEC-CCCCCEEEEEecCCcEEEEEEcCC
Confidence 986 9 9999999999999999998643
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=7.7e-26 Score=256.53 Aligned_cols=218 Identities=14% Similarity=0.200 Sum_probs=170.7
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc-----ceEEeCCCCCCEEEEEEee--CCCEEEEEeCCCcEEE
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQV 102 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-----~~~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~v 102 (1108)
+..||.+.|++++|+|++++||+|+.||.|+||++... .......|..+|++++|+| |+.+|++++.|+.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 44689999999999999999999999999999999753 2234568999999999999 6899999999999999
Q ss_pred EEcCCC---------eeeeee-cCCCCeeEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccC
Q 001279 103 WSLESR---------SLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1108)
Q Consensus 103 Wd~~s~---------~~~~~~-~~~~~Itsl~~~~~--~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1108)
||+.++ +.+..+ .|...|++++|+|+ ++++++|+.||.|++|++.... .... +.+... ......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~-~~~~~~-~~~~~~ 161 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS--DLRS-WTLTSE-MKVLSI 161 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT--CTTC-CEEEEE-EESCSC
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH--Hhcc-cccccc-cccccc
Confidence 999886 334444 67889999999999 9999999999999999987532 1110 111110 000111
Q ss_pred CCCCCCCCeEEEecccC-CCCCEEEEEECCCeEEEEEccCCeEEE---EeCCCcccccccccCCCCCCCCCcccCcCCCC
Q 001279 171 FPLLSHQPVVGVLPHPN-SSGNRVLIAYENALVILWDVSEAQIIF---VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1108)
Q Consensus 171 ~~~~~~~~V~~v~f~P~-~~~~~ll~~~~dg~V~lWdl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1108)
.+..+...+.++.|+|. ..+..+++++.++.+.+|+...++... +.+|
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------------------------- 213 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH---------------------------- 213 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC----------------------------
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC----------------------------
Confidence 12234578999999984 137789999999999888888776532 2233
Q ss_pred CCCCceeEEEeecCCC----CEEEEEEccCcEEEEecCCC
Q 001279 247 PEEKEISALCWASSSG----SILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 247 ~~~~~Vtsl~w~spdg----~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...|++++|. |++ .+|++|+.||.|++||+...
T Consensus 214 --~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 214 --KSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp --CSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred --CcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 7789999986 998 89999999999999998643
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=4.3e-26 Score=261.33 Aligned_cols=305 Identities=11% Similarity=0.098 Sum_probs=218.7
Q ss_pred cceEEeCCCCCCEEEEEEeeC---CCEEEEEeCCCcEEEEEcCC-Ceee-eee-cCCCCeeEEEEecCCCEEEEEeCCCc
Q 001279 67 IEGLLISPSQLPYKNLEFLQN---QGFLISITNDNEIQVWSLES-RSLA-CCL-KWESNITAFSVISGSHFMYIGDENGL 140 (1108)
Q Consensus 67 ~~~~~~~~h~~~V~~l~fs~d---~~~L~S~s~d~~I~vWd~~s-~~~~-~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~ 140 (1108)
.......+|..+|++++|+|+ +.+|++++.|+.|++||+.+ +..+ ..+ .|...|++++|+|++++|++|+.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 344567789999999999999 58999999999999999997 5443 333 68899999999999999999999999
Q ss_pred EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCc
Q 001279 141 MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKD 220 (1108)
Q Consensus 141 V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~ 220 (1108)
|++|+++. +.... +..|. ..|.++.|+|..++.+|++++.||.|++||+.+++.+.....
T Consensus 110 v~iwd~~~--~~~~~----~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 169 (368)
T 3mmy_A 110 AKMWDLSS--NQAIQ----IAQHD------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-- 169 (368)
T ss_dssp EEEEETTT--TEEEE----EEECS------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC--
T ss_pred EEEEEcCC--CCcee----ecccc------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec--
Confidence 99999874 34332 33344 789999995544788899999999999999998876544432
Q ss_pred ccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeee
Q 001279 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLE 300 (1108)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~ 300 (1108)
...+.++.+. +..+++++.++.+.+|++..... .. .
T Consensus 170 ----------------------------~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-----------~~--~ 205 (368)
T 3mmy_A 170 ----------------------------PERCYCADVI---YPMAVVATAERGLIVYQLENQPS-----------EF--R 205 (368)
T ss_dssp ----------------------------SSCEEEEEEE---TTEEEEEEGGGCEEEEECSSSCE-----------EE--E
T ss_pred ----------------------------CCCceEEEec---CCeeEEEeCCCcEEEEEeccccc-----------hh--h
Confidence 3456666654 45899999999999999864310 00 0
Q ss_pred cccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCC
Q 001279 301 LSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSA 380 (1108)
Q Consensus 301 ~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~ 380 (1108)
.. . ..
T Consensus 206 -----------~~---~-----~~-------------------------------------------------------- 210 (368)
T 3mmy_A 206 -----------RI---E-----SP-------------------------------------------------------- 210 (368)
T ss_dssp -----------EC---C-----CS--------------------------------------------------------
T ss_pred -----------hc---c-----cc--------------------------------------------------------
Confidence 00 0 00
Q ss_pred CCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHh
Q 001279 381 GATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIAT 460 (1108)
Q Consensus 381 ~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~ 460 (1108)
......+..+...
T Consensus 211 ----------------------------------------------------~~~~~~~~~~~~~--------------- 223 (368)
T 3mmy_A 211 ----------------------------------------------------LKHQHRCVAIFKD--------------- 223 (368)
T ss_dssp ----------------------------------------------------CSSCEEEEEEEEC---------------
T ss_pred ----------------------------------------------------ccCCCceEEEccc---------------
Confidence 0000000000000
Q ss_pred hccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCce-eeEeeecccc---ceeeccCCC
Q 001279 461 FTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVF-KLICALDAEV---QGIEVAGSR 536 (1108)
Q Consensus 461 ~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l-~~~~~l~~~~---~~~~l~~h~ 536 (1108)
.......+++|+.||.|++||+..... .....+.... ......+|.
T Consensus 224 ------------------------------~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
T 3mmy_A 224 ------------------------------KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI 273 (368)
T ss_dssp ------------------------------TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE
T ss_pred ------------------------------CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc
Confidence 000112489999999999999987643 1111111100 001122333
Q ss_pred CCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCC
Q 001279 537 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 616 (1108)
Q Consensus 537 ~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~ 616 (1108)
.+|++++|+|++++|++|+.||.|+||++... .++..+..|..+|++++|+|+++
T Consensus 274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-------------------------~~~~~~~~~~~~v~~~~~s~~g~ 328 (368)
T 3mmy_A 274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-------------------------TKLKTSEQLDQPISACCFNHNGN 328 (368)
T ss_dssp CCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------------------EEEEECCCCSSCEEEEEECTTSS
T ss_pred cceEEEEEecCCCEEEEEccCCeEEEEECCCC-------------------------cEEEEecCCCCCceEEEECCCCC
Confidence 47999999999999999999999999998865 35677889999999999999999
Q ss_pred EEEEEeCCCeEEEEEc
Q 001279 617 KLAVGFECGRVAVLDM 632 (1108)
Q Consensus 617 ~LavGs~dG~V~vwd~ 632 (1108)
+||+|+.|+..+.|++
T Consensus 329 ~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 329 IFAYASSYDWSKGHEF 344 (368)
T ss_dssp CEEEEECCCSTTCGGG
T ss_pred eEEEEecccccccccc
Confidence 9999999986665554
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=1.1e-25 Score=255.18 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=133.7
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC----eeeeee-cCCCCeeEEEEec--CCCEEEEEeCCCcEEE
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR----SLACCL-KWESNITAFSVIS--GSHFMYIGDENGLMSV 143 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~----~~~~~~-~~~~~Itsl~~~~--~~~~l~vg~~dg~V~v 143 (1108)
+..+|..+|++++|+|++.+|++++.|+.|++||+.++ +....+ .|...|++++|+| ++++|++|+.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 45789999999999999999999999999999999876 344444 6889999999999 5899999999999999
Q ss_pred EEEecCCCeee----eeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCC
Q 001279 144 IKYDADEGKLF----QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGK 219 (1108)
Q Consensus 144 w~~d~~~~~l~----~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~ 219 (1108)
|+++....... .....+..|. ..|.+++|+|...+.+|++++.||.|++||+.+++.+......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSK------------GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCS------------SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EecCCCcccccccCcceeeeecccC------------CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 99986422110 0112344444 7899999998432888999999999999999887532111000
Q ss_pred cccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC---CCEEEEEEccCcEEEEecC
Q 001279 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS---GSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd---g~~l~sg~~DG~I~lWd~~ 280 (1108)
..... . . .....+...+.+++|. |+ +..+++++.||.+.+|+..
T Consensus 154 ~~~~~--~----~----------~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 154 SEMKV--L----S----------IPPANHLQSDFCLSWC-PSRFSPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp EEEES--C----S----------CCCSSCSCCCEEEEEC-CCSSSCCEEEEEETTEEEEEEECT
T ss_pred ccccc--c----c----------cccCCcccceeEEEec-cCCCCCcEEEEecCCCcEEEEccC
Confidence 00000 0 0 0001126789999986 86 8999999999999777764
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=2.6e-25 Score=254.86 Aligned_cols=299 Identities=14% Similarity=0.134 Sum_probs=224.4
Q ss_pred EEcCCCeeeeee-cCCCCeeEEEEecC---CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001279 103 WSLESRSLACCL-KWESNITAFSVISG---SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1108)
Q Consensus 103 Wd~~s~~~~~~~-~~~~~Itsl~~~~~---~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1108)
|+....+.+..+ .|.+.|++++|+|+ +++|++|+.||.|+||+++.....+.. .+.+|. ..
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~h~------------~~ 88 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK---AQQMHT------------GP 88 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE---EEEECS------------SC
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE---Eecccc------------CC
Confidence 344444455554 68899999999999 599999999999999999864334322 255555 78
Q ss_pred eEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEee
Q 001279 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1108)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1108)
|.+++|+| ++.+|++++.||.|++||+.+++.....+| ...|++++|.
T Consensus 89 v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------------------------------~~~v~~~~~~ 136 (368)
T 3mmy_A 89 VLDVCWSD--DGSKVFTASCDKTAKMWDLSSNQAIQIAQH------------------------------DAPVKTIHWI 136 (368)
T ss_dssp EEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEEC------------------------------SSCEEEEEEE
T ss_pred EEEEEECc--CCCEEEEEcCCCcEEEEEcCCCCceeeccc------------------------------cCceEEEEEE
Confidence 99999998 788899999999999999999998887777 7889999983
Q ss_pred -cCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCC
Q 001279 259 -SSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEI 337 (1108)
Q Consensus 259 -spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~ 337 (1108)
++++.+|++++.||.|++||+.++... ..+.. .
T Consensus 137 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~----------------------~------------- 170 (368)
T 3mmy_A 137 KAPNYSCVMTGSWDKTLKFWDTRSSNPM-----------MVLQL----------------------P------------- 170 (368)
T ss_dssp ECSSCEEEEEEETTSEEEEECSSCSSCS-----------EEEEC----------------------S-------------
T ss_pred eCCCCCEEEEccCCCcEEEEECCCCcEE-----------EEEec----------------------C-------------
Confidence 489999999999999999998754110 00000 0
Q ss_pred CCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCC
Q 001279 338 GSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEK 417 (1108)
Q Consensus 338 ~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~ 417 (1108)
.....
T Consensus 171 ------------------------------------------------------------~~~~~--------------- 175 (368)
T 3mmy_A 171 ------------------------------------------------------------ERCYC--------------- 175 (368)
T ss_dssp ------------------------------------------------------------SCEEE---------------
T ss_pred ------------------------------------------------------------CCceE---------------
Confidence 00000
Q ss_pred CCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcE
Q 001279 418 KPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRV 497 (1108)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~l 497 (1108)
.......
T Consensus 176 -------------------------------------------------------------------------~~~~~~~ 182 (368)
T 3mmy_A 176 -------------------------------------------------------------------------ADVIYPM 182 (368)
T ss_dssp -------------------------------------------------------------------------EEEETTE
T ss_pred -------------------------------------------------------------------------EEecCCe
Confidence 0000115
Q ss_pred EEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCe----EEEEecCceEEEEEecCCCCCcc
Q 001279 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS----LAVGNEFGLVYIYNLNGSLDAKN 573 (1108)
Q Consensus 498 latgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~----Lasg~~dG~V~lw~l~~~~~~~~ 573 (1108)
+++++.|+.+++||+........ .....+...+.++++.++... +++++.||.|++|++......
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-- 251 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFR---------RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-- 251 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEE---------ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH--
T ss_pred eEEEeCCCcEEEEEeccccchhh---------hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc--
Confidence 77788899999999987653211 112234457788888887766 999999999999999875210
Q ss_pred ccccccCccceeecccCCcceEEEEEeecC------------cCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEe
Q 001279 574 FLFVLETKSEVHALPEGKISLCRAVFSLVN------------SPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1108)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~------------~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~ 641 (1108)
.+...+..|. .+|++++|+|++++|++|+.||.|+|||+.++..+
T Consensus 252 --------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~--- 308 (368)
T 3mmy_A 252 --------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL--- 308 (368)
T ss_dssp --------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE---
T ss_pred --------------------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE---
Confidence 1123334444 38999999999999999999999999999999887
Q ss_pred ecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEe
Q 001279 642 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1108)
Q Consensus 642 ~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d 698 (1108)
..+.+|..+|.+++|+ |++.+|++++.|+....|+
T Consensus 309 ~~~~~~~~~v~~~~~s----------------------~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 309 KTSEQLDQPISACCFN----------------------HNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EECCCCSSCEEEEEEC----------------------TTSSCEEEEECCCSTTCGG
T ss_pred EEecCCCCCceEEEEC----------------------CCCCeEEEEeccccccccc
Confidence 3556799999999999 5688899999998655554
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=8.5e-26 Score=267.18 Aligned_cols=182 Identities=12% Similarity=0.145 Sum_probs=130.3
Q ss_pred CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe-----------eeeee-cCC------------CCeeEEEEecC
Q 001279 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-----------LACCL-KWE------------SNITAFSVISG 128 (1108)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~-----------~~~~~-~~~------------~~Itsl~~~~~ 128 (1108)
..|.++|++++|+|++.+|++++.|+.|+|||+.+++ +...+ .|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4577899999999999999999999999999999876 34444 566 78999999999
Q ss_pred C--CEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc-------------------------ccccCCCCCCCCCeEE
Q 001279 129 S--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL-------------------------SEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 129 ~--~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~-------------------------~~~~~~~~~~~~~V~~ 181 (1108)
+ .++++|+.||.|++|++.... .....+.+..+.- .........+...|.+
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERD--KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEE--EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCcceEEEeCCCCeEEEEeccccc--CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 8 899999999999999987521 1100111110000 0000011234578999
Q ss_pred EecccCCCCCEEEEEECCCeEEEEEccC-CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 182 VLPHPNSSGNRVLIAYENALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~lWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
++|+| ++.+|+++ .||.|++||+.. ++.......+...+ ..+...|++++|. |
T Consensus 183 ~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~----------------------~~~~~~v~~~~~~-p 236 (447)
T 3dw8_B 183 ISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANM----------------------EELTEVITAAEFH-P 236 (447)
T ss_dssp EEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSG----------------------GGCCCCEEEEEEC-S
T ss_pred EEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccc----------------------cccCcceEEEEEC-C
Confidence 99999 68888888 899999999984 44443321100000 0116789999986 9
Q ss_pred CC-CEEEEEEccCcEEEEecCCC
Q 001279 261 SG-SILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 261 dg-~~l~sg~~DG~I~lWd~~~~ 282 (1108)
++ .+|++|+.||.|++||+.++
T Consensus 237 ~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 237 NSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp SCTTEEEEEETTSCEEEEETTTC
T ss_pred CCCcEEEEEeCCCeEEEEECcCC
Confidence 98 99999999999999999765
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=3.5e-25 Score=261.54 Aligned_cols=115 Identities=12% Similarity=0.279 Sum_probs=95.6
Q ss_pred eCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001279 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1108)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~ 150 (1108)
..+|..+|.+++| ++.+|++++.|+.|++||+.+++....+ .|...|+++++ +++++++|+.||.|++|++..
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-- 202 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-- 202 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--
Confidence 3456778998887 7889999999999999999999888777 58899999998 788999999999999999875
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe
Q 001279 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1108)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~ 211 (1108)
++... .+.+|. ..|.++.|++ ..+++++.||.|++||+.++.
T Consensus 203 ~~~~~---~~~~h~------------~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~ 244 (435)
T 1p22_A 203 GEMLN---TLIHHC------------EAVLHLRFNN----GMMVTCSKDRSIAVWDMASPT 244 (435)
T ss_dssp CCEEE---EECCCC------------SCEEEEECCT----TEEEEEETTSCEEEEECSSSS
T ss_pred CcEEE---EEcCCC------------CcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCC
Confidence 34442 255555 7899999954 469999999999999987653
No 102
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=5.9e-25 Score=258.29 Aligned_cols=285 Identities=17% Similarity=0.264 Sum_probs=213.9
Q ss_pred CeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC
Q 001279 119 NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE 198 (1108)
Q Consensus 119 ~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~ 198 (1108)
-++.++|+++ ++|++|. |++|+||+..+ +.+.+. +.+.+|. ..|++|+|+| +|.+|++|+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~t--g~~~~~-~~~~~~~------------~~V~sv~fsp--dg~~lasgs~ 167 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASS--GDILQL-LQMEQPG------------EYISSVAWIK--EGNYLAVGTS 167 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTT--CCEEEE-EECCSTT------------CCEEEEEECT--TSSEEEEEET
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCC--CCEEEE-EEecCCC------------CcEEEEEECC--CCCEEEEEEC
Confidence 3567899864 6888886 89999999764 555543 4445554 7899999998 7899999999
Q ss_pred CCeEEEEEccCCeEEE-EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEE
Q 001279 199 NALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1108)
Q Consensus 199 dg~V~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lW 277 (1108)
||.|+|||+.+++.+. ..+| ...|.+++| ++..|++|+.|+.+++|
T Consensus 168 Dg~v~iWd~~~~~~~~~~~~h------------------------------~~~v~~~s~---~~~~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 168 SAEVQLWDVQQQKRLRNMTSH------------------------------SARVGSLSW---NSYILSSGSRSGHIHHH 214 (420)
T ss_dssp TSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEE---ETTEEEEEETTSEEEEE
T ss_pred CCeEEEEEcCCCcEEEEEeCC------------------------------CCceEEEee---CCCEEEEEeCCCceeEe
Confidence 9999999999998755 4445 667888886 47899999999999999
Q ss_pred ecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEecccccccccc
Q 001279 278 NTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENL 357 (1108)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~ 357 (1108)
|...... .+..+ .+..
T Consensus 215 d~~~~~~------------------------~~~~~-------------------~~h~--------------------- 230 (420)
T 4gga_A 215 DVRVAEH------------------------HVATL-------------------SGHS--------------------- 230 (420)
T ss_dssp ETTSSSC------------------------EEEEE-------------------ECCS---------------------
T ss_pred eecccce------------------------eeEEe-------------------cccc---------------------
Confidence 9853310 00000 0000
Q ss_pred ceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcc
Q 001279 358 RCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIM 437 (1108)
Q Consensus 358 ~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 437 (1108)
T Consensus 231 -------------------------------------------------------------------------------- 230 (420)
T 4gga_A 231 -------------------------------------------------------------------------------- 230 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCce
Q 001279 438 TVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVF 517 (1108)
Q Consensus 438 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l 517 (1108)
..+..+.++++++++++++.||.|++||...+..
T Consensus 231 ----------------------------------------------~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 231 ----------------------------------------------QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp ----------------------------------------------SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred ----------------------------------------------cceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 0000113456677999999999999999987653
Q ss_pred eeEeeeccccceeeccCCCCCeEEEEEEeCCC-eEEE--EecCceEEEEEecCCCCCccccccccCccceeecccCCcce
Q 001279 518 KLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAV--GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1108)
Q Consensus 518 ~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~-~Las--g~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 594 (1108)
.... -.....|...|.+++|+|++. +|++ |+.|+.|+||++... .
T Consensus 265 ~~~~-------~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-------------------------~ 312 (420)
T 4gga_A 265 GWVP-------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-------------------------A 312 (420)
T ss_dssp CSCC-------SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-------------------------E
T ss_pred ccee-------eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-------------------------c
Confidence 2100 023568889999999999765 4444 457999999999875 2
Q ss_pred EEEEEeecCcCEEEEEEcCCCCEEEEEe--CCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCC
Q 001279 595 CRAVFSLVNSPVRALQFTSSGAKLAVGF--ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHS 672 (1108)
Q Consensus 595 ~~~~~~~h~~~Vtslafspdg~~LavGs--~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~ 672 (1108)
+...+ .+...|+++.|+|+++.+++++ .||.|+|||+.+++.+. .+.+|.++|.+|+|+
T Consensus 313 ~~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~---~l~gH~~~V~~l~~s--------------- 373 (420)
T 4gga_A 313 CLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---ELKGHTSRVLSLTMS--------------- 373 (420)
T ss_dssp EEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---EECCCSSCEEEEEEC---------------
T ss_pred cceee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEc---------------
Confidence 33444 3456799999999999888765 79999999999998874 567899999999999
Q ss_pred CCCCCCCCCccEEEEEcCCccEEEEeCCCcc
Q 001279 673 EREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 673 ~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1108)
|++.+|++|+.|++|++||.....
T Consensus 374 -------pdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 374 -------PDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp -------TTSSCEEEEETTTEEEEECCSCSS
T ss_pred -------CCCCEEEEEecCCeEEEEECCCCC
Confidence 668889999999999999986533
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=7.6e-25 Score=255.67 Aligned_cols=197 Identities=13% Similarity=0.180 Sum_probs=157.4
Q ss_pred CCCceEEEEcCCCCEE-EEEECCCcEEEEecCCc-----ceEEeCCCCCCEEEEEEee-CCCEEEEEeCCCcEEEEEcCC
Q 001279 35 PATASILAFDHIQRLL-AIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 35 ~~~is~la~sp~~~~L-A~Gs~dG~I~iw~~~~~-----~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWd~~s 107 (1108)
......++++|+...+ ++|+.||.|+||+++.. ....+.+|.++|.+++|+| ++.+|++++.|+.|+|||+.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 3455678999987644 45889999999998553 2335678999999999999 899999999999999999998
Q ss_pred C-------eeeeee-cCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceee--cccccccccCCCCCCC
Q 001279 108 R-------SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNI--SADALSEKAGFPLLSH 176 (1108)
Q Consensus 108 ~-------~~~~~~-~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i--~~~~~~~~~~~~~~~~ 176 (1108)
+ +.+..+ .|...|++++|+|++ +++++|+.||.|+||++.. ++... .+ ..|.
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~---~~~~~~~~------------ 176 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT--GAAVL---TLGPDVHP------------ 176 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT--TEEEE---EECTTTCC------------
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC--CCccE---EEecCCCC------------
Confidence 7 344444 688999999999998 7999999999999999874 34432 24 4454
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe--CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeE
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vts 254 (1108)
..|.+++|+| ++.+|++++.||.|++||+++++.+... +|. ...+.+
T Consensus 177 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~~~~ 225 (402)
T 2aq5_A 177 DTIYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-----------------------------GTRPVH 225 (402)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-----------------------------SSSCCE
T ss_pred CceEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-----------------------------CCcceE
Confidence 7899999998 6788999999999999999998876543 330 223777
Q ss_pred EEeecCCCCEEEEE---EccCcEEEEecC
Q 001279 255 LCWASSSGSILAVG---YIDGDILLWNTS 280 (1108)
Q Consensus 255 l~w~spdg~~l~sg---~~DG~I~lWd~~ 280 (1108)
++|. |++.+|++| +.||.|++||+.
T Consensus 226 ~~~~-~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 226 AVFV-SEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp EEEC-STTEEEEEEECTTCCEEEEEEETT
T ss_pred EEEc-CCCcEEEEeccCCCCceEEEEcCc
Confidence 8875 888888888 578888888875
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.4e-24 Score=248.04 Aligned_cols=121 Identities=13% Similarity=0.178 Sum_probs=99.7
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|...|++++|+|++++|++|+.||.|+||+++.....+. ..+.+|. ..|++++|+|..++.+|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~h~------------~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI---DTLTGHE------------GPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE---EEECCCS------------SCEEEEEECCGGGCSEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee---eEecCCC------------CcEEEEEeCCCCCCCEEE
Confidence 6889999999999999999999999999999985434443 3356665 789999998754588899
Q ss_pred EEECCCeEEEEEccCCeE---EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC--CCEEEEEE
Q 001279 195 IAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd--g~~l~sg~ 269 (1108)
+++.||.|++||+.+++. ....+| ...|++++|. |+ +.+|++++
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~~~l~~~~ 122 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVH------------------------------SASVNSVQWA-PHEYGPLLLVAS 122 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSCEEEEEEC-CGGGCSEEEEEE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCC------------------------------CcceEEEEeC-CCCCCCEEEEec
Confidence 999999999999999863 223333 6789999986 88 88999999
Q ss_pred ccCcEEEEecCC
Q 001279 270 IDGDILLWNTST 281 (1108)
Q Consensus 270 ~DG~I~lWd~~~ 281 (1108)
.||.|++||+..
T Consensus 123 ~d~~i~v~d~~~ 134 (379)
T 3jrp_A 123 SDGKVSVVEFKE 134 (379)
T ss_dssp TTSEEEEEECCT
T ss_pred CCCcEEEEecCC
Confidence 999999998854
No 105
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.7e-22 Score=264.98 Aligned_cols=438 Identities=11% Similarity=0.057 Sum_probs=297.0
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC------CcEEEEEcCC
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND------NEIQVWSLES 107 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d------~~I~vWd~~s 107 (1108)
+...+...+||| +.||.++. +.|++|+.++.+...+..|...|.+++|||||.+|+.++.+ ..|.+||+.+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~ 89 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 89 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC
Confidence 345688899995 58888876 78999999888888888899999999999999999988754 3799999999
Q ss_pred CeeeeeecCCCCe-------eEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001279 108 RSLACCLKWESNI-------TAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1108)
Q Consensus 108 ~~~~~~~~~~~~I-------tsl~~~~~~~~l~vg~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1108)
++......|...+ .+++|+|+++++++++.+ +...||.++...+...+ +..
T Consensus 90 g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~-------------- 151 (1045)
T 1k32_A 90 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNL-------------- 151 (1045)
T ss_dssp TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCS--------------
T ss_pred CCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecC--------------
Confidence 8865555677777 899999999977888755 54556666654455443 221
Q ss_pred CCeEEEecccCCCCCEEEEEEC------------CCeEEEEEcc-CCeEEEEeCCCcccccccccCCCCCCCCCcccCcC
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYE------------NALVILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~------------dg~V~lWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1108)
.....+.|+| | +++++.. +....+|... +++...+.+|
T Consensus 152 ~~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~------------------------- 202 (1045)
T 1k32_A 152 GPATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM------------------------- 202 (1045)
T ss_dssp CSCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC-------------------------
T ss_pred CCcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC-------------------------
Confidence 1234566877 4 6777653 2345666533 2555555555
Q ss_pred CCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeeccccccc
Q 001279 244 EHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRS 323 (1108)
Q Consensus 244 ~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~ 323 (1108)
...+.+++|. ++ ..++++..||.+.+|.+...... ...+... ..... ...
T Consensus 203 -----~~~v~~~~~s-~d-~l~~~~~~dg~~~l~~~~~~g~~----------~~~l~~~---~~~~~----------~~~ 252 (1045)
T 1k32_A 203 -----STHVSSPVIV-GH-RIYFITDIDGFGQIYSTDLDGKD----------LRKHTSF---TDYYP----------RHL 252 (1045)
T ss_dssp -----SSCCEEEEEE-TT-EEEEEECTTSSCEEEEEETTSCS----------CEECCCC---CSSCE----------EEE
T ss_pred -----CCcccceEEe-CC-EEEEEEeccCceEEEEEeCCCCc----------ceEecCC---CCcce----------eeE
Confidence 7788999986 76 66777888899999987532110 1111100 00011 124
Q ss_pred CCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecC------------CCCccceEEEe-cCCCCCCCCCcce
Q 001279 324 NIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT------------LTGSFADMILL-SSAGATVGNHKAD 390 (1108)
Q Consensus 324 ~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~------------~~~~v~~~~~~-p~~~~~~~~~~~~ 390 (1108)
+++|..++++... .+.+|.... ..+ ..+. ....+..+.++ |+.. .
T Consensus 253 SpDG~~la~~~~~--------~i~~~d~~~-~~l-----~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~--------~ 310 (1045)
T 1k32_A 253 NTDGRRILFSKGG--------SIYIFNPDT-EKI-----EKIEIGDLESPEDRIISIPSKFAEDFSPLDGD--------L 310 (1045)
T ss_dssp EESSSCEEEEETT--------EEEEECTTT-CCE-----EECCCCCCCBCCSEEEECGGGGEEEEEECGGG--------C
T ss_pred cCCCCEEEEEeCC--------EEEEecCCc-eEe-----eeeccCcccccccccccccccceeeecCCCCC--------E
Confidence 4566666665322 233332211 111 1111 12257788888 7732 2
Q ss_pred EEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCc
Q 001279 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1108)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1108)
++... .+.+++++.......
T Consensus 311 la~~~-~~~i~~~~~~~~~~~----------------------------------------------------------- 330 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVL----------------------------------------------------------- 330 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEE-----------------------------------------------------------
T ss_pred EEEEE-cCEEEEEcCCCCceE-----------------------------------------------------------
Confidence 22222 566666653211000
Q ss_pred cCcccccccCCcccCCCccccCCCCcEEEEEecCCcEE-EEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCC
Q 001279 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVR-IWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1108)
Q Consensus 471 ~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVr-iWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~ 549 (1108)
.+.++....+..++++ +++.+++++.++.|. +||+.++... .+.+|...+.+++|+|||+
T Consensus 331 ------~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~------------~l~~~~~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 331 ------KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE------------KFEENLGNVFAMGVDRNGK 391 (1045)
T ss_dssp ------ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE------------ECCCCCCSEEEEEECTTSS
T ss_pred ------EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce------------EecCCccceeeeEECCCCC
Confidence 0000000011233677 888999988888888 9999877644 1337778899999999999
Q ss_pred eEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCC----
Q 001279 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG---- 625 (1108)
Q Consensus 550 ~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG---- 625 (1108)
+|++++.++.|++|++.+.. +......|.+.|.+++|||||++||+++.++
T Consensus 392 ~la~~~~~~~v~~~d~~tg~-------------------------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGK-------------------------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCC-------------------------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred EEEEECCCCeEEEEECCCCc-------------------------eEEeccCCCCCccceEECCCCCeEEEEecCccccc
Confidence 99999999999999997652 3344457899999999999999999887654
Q ss_pred ------eEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 626 ------RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 626 ------~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
.|++||+.++.+. .+..|...+..+.|+ |++..|+.++.++...+|+.
T Consensus 447 ~~~~~~~i~l~d~~~g~~~----~l~~~~~~~~~~~~s----------------------pdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRKIF----AATTENSHDYAPAFD----------------------ADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CSCCEEEEEEEETTTTEEE----ECSCSSSBEEEEEEC----------------------TTSCEEEEEESCCCCCEECS
T ss_pred cCCCCCeEEEEECCCCcEE----EeeCCCcccCCceEc----------------------CCCCEEEEEecccCCcCcch
Confidence 9999999998743 556788889999999 66888999999999999987
Q ss_pred CCcc
Q 001279 700 SSEN 703 (1108)
Q Consensus 700 ~~g~ 703 (1108)
....
T Consensus 501 ~~~~ 504 (1045)
T 1k32_A 501 VVLN 504 (1045)
T ss_dssp SSSC
T ss_pred hccc
Confidence 6433
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.5e-24 Score=247.97 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=136.9
Q ss_pred EEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC--CCeeeeee-cCCCCeeEEEEecC--CCEEEEEeCCCcEEEE
Q 001279 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE--SRSLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVI 144 (1108)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~--s~~~~~~~-~~~~~Itsl~~~~~--~~~l~vg~~dg~V~vw 144 (1108)
..+.+|..+|++++|+|++.+|++++.|+.|+|||+. +++.+..+ .|...|++++|+++ +++|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 3556799999999999999999999999999999998 55555555 58899999999977 8999999999999999
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCe---EEEEeCCCcc
Q 001279 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---IIFVGGGKDL 221 (1108)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~---~~~~~~~~~~ 221 (1108)
+++....... ..+..|. ..|.+++|+|...+.+|++++.||.|++||+.... .....+|
T Consensus 85 d~~~~~~~~~---~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--- 146 (379)
T 3jrp_A 85 KEENGRWSQI---AVHAVHS------------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH--- 146 (379)
T ss_dssp EEETTEEEEE---EEECCCS------------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC---
T ss_pred EcCCCceeEe---eeecCCC------------cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC---
Confidence 9986321122 2344444 78999999994338889999999999999998873 2334444
Q ss_pred cccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC-------------CCCEEEEEEccCcEEEEecCC
Q 001279 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-------------SGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-------------dg~~l~sg~~DG~I~lWd~~~ 281 (1108)
...|++++|. | ++.+|++|+.||.|++||+.+
T Consensus 147 ---------------------------~~~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 191 (379)
T 3jrp_A 147 ---------------------------AIGVNSASWA-PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 191 (379)
T ss_dssp ---------------------------TTCEEEEEEC-CCC----------CTTCEEEEEETTSCEEEEEEET
T ss_pred ---------------------------CCceEEEEEc-CccccccccccCCCCCCEEEEEeCCCeEEEEEecC
Confidence 7789999986 7 799999999999999999864
No 107
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=8.7e-25 Score=246.29 Aligned_cols=251 Identities=16% Similarity=0.145 Sum_probs=184.3
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc---eEEeCCCCCCEEEEEEee--CCCEEEEEeCCCcEEEEEc
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~---~~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWd~ 105 (1108)
..||...|.+++|+|++++||+|+.|+.|+|||+.... ...+.+|.++|.+++|++ ++.+|++++.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 34889999999999999999999999999999996542 335678999999999986 4789999999999999999
Q ss_pred CCCe--eeeee-cCCCCeeEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 106 ESRS--LACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 106 ~s~~--~~~~~-~~~~~Itsl~~~~~--~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
+++. .+..+ .|...|++++|+|+ +.+|++|+.||.|++|++..... ... ...+.+|. ..|.
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-~~~-~~~~~~h~------------~~v~ 154 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-WEV-KKINNAHT------------IGCN 154 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-EEE-CCBTTSSS------------SCBC
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-cce-eeeecccc------------CCcc
Confidence 9874 33333 68889999999998 78999999999999999875321 110 12233443 6788
Q ss_pred EEecccCC---------------CCCEEEEEECCCeEEEEEccCC---eEE-EEeCCCcccccccccCCCCCCCCCcccC
Q 001279 181 GVLPHPNS---------------SGNRVLIAYENALVILWDVSEA---QII-FVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1108)
Q Consensus 181 ~v~f~P~~---------------~~~~ll~~~~dg~V~lWdl~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1108)
++.|+|.. .+.+|++|+.|++|++||+... +.. .+.+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h----------------------- 211 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH----------------------- 211 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-----------------------
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-----------------------
Confidence 89998842 1467999999999999999754 222 23344
Q ss_pred cCCCCCCCCceeEEEeecCCC----CEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeec
Q 001279 242 ISEHQPEEKEISALCWASSSG----SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWST 317 (1108)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg----~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~ 317 (1108)
...|.+++|. |++ .+|++|+.||+|++|++.+...... ....+.. ...++..+
T Consensus 212 -------~~~V~~v~~s-p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~-------~~~~~~~----~~~~v~~v---- 268 (316)
T 3bg1_A 212 -------SDWVRDVAWA-PSIGLPTSTIASCSQDGRVFIWTCDDASSNTW-------SPKLLHK----FNDVVWHV---- 268 (316)
T ss_dssp -------SSCEEEEECC-CCSSCSCCEEEEEETTCEEEEEECSSTTCCCC-------BCCEEEE----CSSCEEEE----
T ss_pred -------CCceEEEEec-CCCCCCCceEEEEcCCCeEEEEEccCccccch-------hhhhhhc----CCCcEEEE----
Confidence 7789999986 886 8999999999999999875311000 0000100 12233333
Q ss_pred ccccccCCCceEEEEeCCCCCCcceEEEEeccccc
Q 001279 318 NKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1108)
Q Consensus 318 ~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1108)
++++++.+|++++.|+ .+++|...
T Consensus 269 ----~~sp~g~~las~~~D~-------~v~lw~~~ 292 (316)
T 3bg1_A 269 ----SWSITANILAVSGGDN-------KVTLWKES 292 (316)
T ss_dssp ----EECTTTCCEEEEESSS-------CEEEEEEC
T ss_pred ----EEcCCCCEEEEEcCCC-------eEEEEEEC
Confidence 3667788999999887 77777643
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=6.5e-24 Score=243.31 Aligned_cols=152 Identities=9% Similarity=0.151 Sum_probs=109.8
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEE-EEeCCCcEEEEEcCCCee
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~-S~s~d~~I~vWd~~s~~~ 110 (1108)
.+|...|.+++|+|++++||+|+.+| ++||+.+..+......+. .+..++|++++..++ +++.|++|++||+.+++.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 57789999999999999999999876 789999876655444333 588899998888774 566788999999999999
Q ss_pred eeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 111 ~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
+..+.+...|.+++++++. ++++ .++.|++|++.... +... .+.. . ..+.+ ++|
T Consensus 94 ~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~-~~~~---~~~~-~------------~~~~~--~s~---- 147 (355)
T 3vu4_A 94 VSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW-KRIT---DDIR-F------------GGVCE--FSN---- 147 (355)
T ss_dssp EEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC-CBSS---CCEE-E------------EEEEE--EET----
T ss_pred EEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc-eeeE---Eecc-C------------CceEE--EEc----
Confidence 9999899999999998754 4444 47889999987531 2221 1211 1 22333 433
Q ss_pred CEEEE--EECCCeEEEEEccCCe
Q 001279 191 NRVLI--AYENALVILWDVSEAQ 211 (1108)
Q Consensus 191 ~~ll~--~~~dg~V~lWdl~~~~ 211 (1108)
..+++ |+.+|.|++||+.++.
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~ 170 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSG 170 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC--
T ss_pred cEEEEeCCCcCcEEEEEECCCCC
Confidence 34665 5789999999988754
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-25 Score=259.70 Aligned_cols=284 Identities=12% Similarity=0.053 Sum_probs=202.4
Q ss_pred EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001279 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1108)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~ 150 (1108)
...+-..+|.+|+|+|||.++||++.|++|+ |...++.+ -.|+..|.+++|+|++ .++.+.+|+.+
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~--- 75 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFELAQ--- 75 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSCCC---
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEeCC---
Confidence 3445568999999999999999999999999 86666544 3788999999999998 45544444322
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCC
Q 001279 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1108)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 230 (1108)
+... ..+. +. ..|++++|+| +|.+|++++.||.|+|||..+ ++....|...
T Consensus 76 ~~~~---~~~~-~~------------~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~--------- 126 (588)
T 2j04_A 76 QNGL---LNSQ-PV------------CYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGN--------- 126 (588)
T ss_dssp SSCS---STTS-CS------------CCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECCCSSC---------
T ss_pred CceE---eecC-CC------------CcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeeccCCCc---------
Confidence 2222 1111 12 7899999999 788899999999999999655 3333223100
Q ss_pred CCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccE
Q 001279 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 310 (1108)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i 310 (1108)
.....|.+++|. |||++|++|+.||+|++||+.++.... + .+
T Consensus 127 ----------------~~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~~~~l~~--------~-------------~~ 168 (588)
T 2j04_A 127 ----------------LSSRTYHCFEWN-PIESSIVVGNEDGELQFFSIRKNSENT--------P-------------EF 168 (588)
T ss_dssp ----------------STTTCEEEEEEC-SSSSCEEEEETTSEEEEEECCCCTTTC--------C-------------CC
T ss_pred ----------------cccccEEEEEEc-CCCCEEEEEcCCCEEEEEECCCCcccc--------c-------------cc
Confidence 014469999985 999999999999999999997541000 0 00
Q ss_pred EEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcce
Q 001279 311 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 390 (1108)
Q Consensus 311 ~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~ 390 (1108)
..+ ..+..
T Consensus 169 i~l------------------------------~ti~~------------------------------------------ 176 (588)
T 2j04_A 169 YFE------------------------------SSIRL------------------------------------------ 176 (588)
T ss_dssp EEE------------------------------EEEEC------------------------------------------
T ss_pred eee------------------------------eeeec------------------------------------------
Confidence 000 00000
Q ss_pred EEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCc
Q 001279 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1108)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1108)
T Consensus 177 -------------------------------------------------------------------------------- 176 (588)
T 2j04_A 177 -------------------------------------------------------------------------------- 176 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeec-cCCCCCeEEEEEEeCCC
Q 001279 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-AGSRAPVSTLSFCFINS 549 (1108)
Q Consensus 471 ~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l-~~h~~~Vt~lafs~d~~ 549 (1108)
..+||...+..++++|++ +++++.|++|++||+.++.+.. +. ..+ .+|+..|.+++|+ ++
T Consensus 177 -------~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~-------~~-~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 177 -------SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP-------VS-RMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp -------SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC-------CE-EEEECCCSSCCCCEEEE--TT
T ss_pred -------ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc-------ce-eeecccccCcEEEEEEE--CC
Confidence 001111122233677888 8889999999999998877320 00 124 3788899999999 68
Q ss_pred eEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEE--cCCCCEEEEEeCCCeE
Q 001279 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF--TSSGAKLAVGFECGRV 627 (1108)
Q Consensus 550 ~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslaf--spdg~~LavGs~dG~V 627 (1108)
.||+++ +|+|++|++.... ......+|...|..++| +|++..|+++++||+
T Consensus 238 ~LASa~-~~tIkLWd~~~~~-------------------------~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNYS-------------------------ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp EEEEEC-SSEEEEEETTTTE-------------------------EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred EEEEEe-CCeEEEEECCCCe-------------------------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 999997 6999999988761 21222389999999999 999999999999999
Q ss_pred EEEEcc
Q 001279 628 AVLDMN 633 (1108)
Q Consensus 628 ~vwd~~ 633 (1108)
++|...
T Consensus 291 klw~~d 296 (588)
T 2j04_A 291 KVLLED 296 (588)
T ss_dssp EEEESS
T ss_pred EEEeec
Confidence 999887
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.7e-23 Score=246.70 Aligned_cols=209 Identities=11% Similarity=0.142 Sum_probs=150.6
Q ss_pred eeeeeCCCCCceEEEEcCCC----------CEEEEEECC----CcEEEEecC----------------------------
Q 001279 28 IAVHYGIPATASILAFDHIQ----------RLLAIATLD----GRIKVIGGD---------------------------- 65 (1108)
Q Consensus 28 ~~~~~G~~~~is~la~sp~~----------~~LA~Gs~d----G~I~iw~~~---------------------------- 65 (1108)
...+|-.+-...++.|-|+. .++++|+.. ..|.++.++
T Consensus 38 ~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~ 117 (430)
T 2xyi_A 38 LVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCG 117 (430)
T ss_dssp EEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------
T ss_pred HHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCC
Confidence 44555555666788888875 468888863 467777532
Q ss_pred CcceEEeCCCCCCEEEEEEeeC-CCEEEEEeCCCcEEEEEcCC----------Ceeeeee-cCCCCeeEEEEecCCC-EE
Q 001279 66 GIEGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLES----------RSLACCL-KWESNITAFSVISGSH-FM 132 (1108)
Q Consensus 66 ~~~~~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWd~~s----------~~~~~~~-~~~~~Itsl~~~~~~~-~l 132 (1108)
.........|.++|++++|+|+ +.+|++++.++.|++||+.+ ...+..+ .|...|++++|+|++. +|
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 1122345679999999999997 67899999999999999986 3444444 6888999999999988 99
Q ss_pred EEEeCCCcEEEEEEecCCC--eeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCC
Q 001279 133 YIGDENGLMSVIKYDADEG--KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1108)
Q Consensus 133 ~vg~~dg~V~vw~~d~~~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~ 210 (1108)
++|+.||.|++|++..... ........+..|. ..|.+++|+|. ++..|++++.||.|++||++++
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~------------~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHT------------AVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEETTCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCC------------CCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999875211 1111112233443 78999999996 5667899999999999999876
Q ss_pred e---E-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEEEEEccCcEEEEecC
Q 001279 211 Q---I-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 211 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~DG~I~lWd~~ 280 (1108)
. . ..+..| ...|++++|. |++. .|++|+.||.|++||+.
T Consensus 265 ~~~~~~~~~~~~------------------------------~~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 265 NTSKPSHTVDAH------------------------------TAEVNCLSFN-PYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp CSSSCSEEEECC------------------------------SSCEEEEEEC-SSCTTEEEEEETTSEEEEEETT
T ss_pred CCCcceeEeecC------------------------------CCCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCC
Confidence 2 2 222233 5667777765 6665 56677777777777664
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-23 Score=248.59 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=124.3
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe---eeeeecC------------------------------------
Q 001279 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS---LACCLKW------------------------------------ 116 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~---~~~~~~~------------------------------------ 116 (1108)
..|+++++|+++|.+|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3589999999999865555 58899999999988 5544421
Q ss_pred -------------------CCCeeEEEEecCCCEE-EEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001279 117 -------------------ESNITAFSVISGSHFM-YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1108)
Q Consensus 117 -------------------~~~Itsl~~~~~~~~l-~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1108)
.+.|++++|+|++++| ++|+.||.|+||++....+...+. +....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~------------ 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL-RKRFCFS------------ 149 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE-EEEEECS------------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee-eecccCC------------
Confidence 1259999999999996 899999999999998323343322 1111222
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEE-----EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCc
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1108)
..|++++|+| ++.+|++++.+|.|.+|++.+++.. .+.+| ...
T Consensus 150 ~~v~~~~~sp--~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h------------------------------~~~ 197 (450)
T 2vdu_B 150 KRPNAISIAE--DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH------------------------------VSM 197 (450)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC------------------------------SSC
T ss_pred CCceEEEEcC--CCCEEEEEeCCCcEEEEecCCcccccccceeeecc------------------------------cCc
Confidence 6799999998 7888999999999999999876532 12223 678
Q ss_pred eeEEEeecCC---CCEEEEEEccCcEEEEecCCC
Q 001279 252 ISALCWASSS---GSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 252 Vtsl~w~spd---g~~l~sg~~DG~I~lWd~~~~ 282 (1108)
|++++|. |+ +.+|++|+.||.|++||+.++
T Consensus 198 v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 198 LTDVHLI-KDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEEE-ECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred eEEEEEc-CCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 9999986 99 999999999999999998643
No 112
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=3.3e-22 Score=262.26 Aligned_cols=412 Identities=12% Similarity=0.019 Sum_probs=262.8
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECC------CcEEEEecCCcceEEeCCCCCCE-------EEEEEeeCCCEEEEEeC
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISPSQLPY-------KNLEFLQNQGFLISITN 96 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~d------G~I~iw~~~~~~~~~~~~h~~~V-------~~l~fs~d~~~L~S~s~ 96 (1108)
...+|+..+.+++|||||++||.++.+ ..|++|+..+.+...+..|...+ ..++|+|||..+++.+.
T Consensus 47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~ 126 (1045)
T 1k32_A 47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA 126 (1045)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECC
Confidence 335788899999999999999998654 47999999888877888888888 99999999986677664
Q ss_pred C------CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC------------CCcEEEEEEecCCCeeeeece
Q 001279 97 D------NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE------------NGLMSVIKYDADEGKLFQLPY 158 (1108)
Q Consensus 97 d------~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~------------dg~V~vw~~d~~~~~l~~~~~ 158 (1108)
+ ..|.+||+.+++........ ...++|+| + ++++++. +...++|..... +.+.+
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~l~~~~--~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~--- 198 (1045)
T 1k32_A 127 MQPFSSMTCLYRVENDGINFVPLNLGP--ATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKK--- 198 (1045)
T ss_dssp TSSSTTCCEEEEEEGGGTEEEECCSCS--CSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEE---
T ss_pred cCCCcccceEEEEECCCCCeEEecCCC--cceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCC-CCeEE---
Confidence 4 35888888887765444332 35677999 7 8888752 345677876543 44443
Q ss_pred eecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC--CeEEEEeCCCcccccccccCCCCCCCC
Q 001279 159 NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE--AQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1108)
Q Consensus 159 ~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1108)
+.+|. ..+.++.|+| + ..++++..++.+.||++.. +....+..|
T Consensus 199 -l~~~~------------~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~------------------ 244 (1045)
T 1k32_A 199 -IVDMS------------THVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSF------------------ 244 (1045)
T ss_dssp -EECCS------------SCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEECCCC------------------
T ss_pred -CcCCC------------CcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceEecCC------------------
Confidence 34554 7799999976 4 4456777788889998753 333333222
Q ss_pred CcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEee
Q 001279 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWS 316 (1108)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~ 316 (1108)
..+.+.+|. |||+.|+.+ .++.|.+|+..... +..+..... ...+...-+..
T Consensus 245 -------------~~~~~~~~S-pDG~~la~~-~~~~i~~~d~~~~~------------l~~l~~~~~-~~~~~~~~~~~ 296 (1045)
T 1k32_A 245 -------------TDYYPRHLN-TDGRRILFS-KGGSIYIFNPDTEK------------IEKIEIGDL-ESPEDRIISIP 296 (1045)
T ss_dssp -------------CSSCEEEEE-ESSSCEEEE-ETTEEEEECTTTCC------------EEECCCCCC-CBCCSEEEECG
T ss_pred -------------CCcceeeEc-CCCCEEEEE-eCCEEEEecCCceE------------eeeeccCcc-ccccccccccc
Confidence 235566765 999998887 58999999983221 111100000 00000001111
Q ss_pred cccccccC-CCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecC-CCC-ccceEEEecCCCCCCCCCcceEEE
Q 001279 317 TNKESRSN-IDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT-LTG-SFADMILLSSAGATVGNHKADLFV 393 (1108)
Q Consensus 317 ~~~s~~~~-~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~-~~~-~v~~~~~~p~~~~~~~~~~~~l~v 393 (1108)
....+..+ ++|..++++... .+.+|...... . ..+. ... .+..+.++ + ...++.
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~--------~i~~~~~~~~~-~-----~~~~~~~~~~~~~~~~s-d--------g~~l~~ 353 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRG--------QAFIQDVSGTY-V-----LKVPEPLRIRYVRRGGD-T--------KVAFIH 353 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETT--------EEEEECTTSSB-E-----EECSCCSCEEEEEECSS-S--------EEEEEE
T ss_pred ccceeeecCCCCCEEEEEEcC--------EEEEEcCCCCc-e-----EEccCCCcceEEeeeEc-C--------CCeEEE
Confidence 12223466 778777776533 22222221100 0 1111 111 23333333 2 112333
Q ss_pred EcCCCeEE-EEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccC
Q 001279 394 LTSPGQLH-FYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1108)
Q Consensus 394 l~~~G~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1108)
....+.+. +|+.....
T Consensus 354 ~s~~~~l~~~~d~~~~~--------------------------------------------------------------- 370 (1045)
T 1k32_A 354 GTREGDFLGIYDYRTGK--------------------------------------------------------------- 370 (1045)
T ss_dssp EETTEEEEEEEETTTCC---------------------------------------------------------------
T ss_pred EECCCceEEEEECCCCC---------------------------------------------------------------
Confidence 33333444 43321100
Q ss_pred cccccccCCcccCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEE
Q 001279 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1108)
Q Consensus 473 ~~~wp~~gg~~~~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~La 552 (1108)
..++. ++...+..++++|+++.|++++.|+.|++||+.++.+. ..+.+|...|.+++|+|||++|+
T Consensus 371 --~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~-----------~~~~~~~~~v~~~~~SpDG~~la 436 (1045)
T 1k32_A 371 --AEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT-----------VIERSREAMITDFTISDNSRFIA 436 (1045)
T ss_dssp --EEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----------EEEECSSSCCCCEEECTTSCEEE
T ss_pred --ceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE-----------EeccCCCCCccceEECCCCCeEE
Confidence 00122 22223334578999999999999999999999988765 22346778899999999999999
Q ss_pred EEecCc----------eEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEe
Q 001279 553 VGNEFG----------LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1108)
Q Consensus 553 sg~~dG----------~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs 622 (1108)
+++.++ .|++|++... ....+..|...+.+++|+|||++|++++
T Consensus 437 ~~~~~~~~~~~~~~~~~i~l~d~~~g--------------------------~~~~l~~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 437 YGFPLKHGETDGYVMQAIHVYDMEGR--------------------------KIFAATTENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTT--------------------------EEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred EEecCccccccCCCCCeEEEEECCCC--------------------------cEEEeeCCCcccCCceEcCCCCEEEEEe
Confidence 887654 8999998764 1344567788899999999999999999
Q ss_pred CCCeEEEEEccCceE
Q 001279 623 ECGRVAVLDMNLLSV 637 (1108)
Q Consensus 623 ~dG~V~vwd~~~~~~ 637 (1108)
.++...+|+.....+
T Consensus 491 ~~~~~~~~~~~~~~~ 505 (1045)
T 1k32_A 491 YRSLDPSPDRVVLNF 505 (1045)
T ss_dssp SCCCCCEECSSSSCE
T ss_pred cccCCcCcchhcccc
Confidence 988888888765443
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.3e-23 Score=240.82 Aligned_cols=168 Identities=10% Similarity=0.085 Sum_probs=110.6
Q ss_pred EecCCcEEEEeCCCCceeeEeeecc-----ccceeeccCCCCCeEEEEEEeCCCeEEEEecCce-EEEEEecCCCCCccc
Q 001279 501 GYHDGSVRIWDATYPVFKLICALDA-----EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL-VYIYNLNGSLDAKNF 574 (1108)
Q Consensus 501 gs~DGtVriWd~~~~~l~~~~~l~~-----~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~-V~lw~l~~~~~~~~~ 574 (1108)
|+.||+|++||+..+........+. ......+.+|..+|++++|+|++++|++|+.||+ |+||++...
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~------ 228 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG------ 228 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC------
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC------
Confidence 6889999999998754100000000 0001247799999999999999999999999998 999999865
Q ss_pred cccccCccceeecccCCcceEEEEEe-e-cCcCEEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCC-----C
Q 001279 575 LFVLETKSEVHALPEGKISLCRAVFS-L-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG-----S 647 (1108)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~-h~~~Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~-----h 647 (1108)
.++..+. + |...|++++|+|++++||+|+.||+|+|||+..+.... .+.+.+ +
T Consensus 229 -------------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~ 288 (355)
T 3vu4_A 229 -------------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK-RHALKGWINMKY 288 (355)
T ss_dssp -------------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC-SEETTTTEECCC
T ss_pred -------------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc-cccccceeeccc
Confidence 2556676 4 99999999999999999999999999999997653210 001111 1
Q ss_pred CCc---eEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcc
Q 001279 648 SSP---IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 648 ~~~---V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1108)
... +....+... ...........+++..|++++.||.+.+|+...++
T Consensus 289 ~~~~~~~~~~~~~~~---------~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVD---------KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCSSCSEEEECCCC---------TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccceeEEEeccC---------CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 001 111111000 00001112233678899999999999999976533
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=3.3e-23 Score=244.19 Aligned_cols=151 Identities=21% Similarity=0.254 Sum_probs=123.9
Q ss_pred CCcEEEEEecCCcEEEEeCCCCce-eeEeeeccccceeeccCCCCCeEEEEEEeCCC-eEEEEecCceEEEEEecCCCCC
Q 001279 494 VDRVYLAGYHDGSVRIWDATYPVF-KLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDA 571 (1108)
Q Consensus 494 ~~~llatgs~DGtVriWd~~~~~l-~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~-~Lasg~~dG~V~lw~l~~~~~~ 571 (1108)
++.++++++.||.|++||+..... ..+ ..+..|...|++|+|+|++. +|++|+.||.|+||++.....
T Consensus 243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~- 312 (430)
T 2xyi_A 243 HESLFGSVADDQKLMIWDTRNNNTSKPS---------HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL- 312 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCSCSSSCS---------EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-
T ss_pred CCCEEEEEeCCCeEEEEECCCCCCCcce---------eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-
Confidence 455899999999999999987631 100 23558889999999999997 688999999999999986421
Q ss_pred ccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEccC--------------ce
Q 001279 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNL--------------LS 636 (1108)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg-~~LavGs~dG~V~vwd~~~--------------~~ 636 (1108)
++..+..|...|++++|+|++ .+|++|+.||.|+|||+.. +.
T Consensus 313 -----------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 369 (430)
T 2xyi_A 313 -----------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 369 (430)
T ss_dssp -----------------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTT
T ss_pred -----------------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcc
Confidence 356678899999999999998 4799999999999999987 24
Q ss_pred EEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCcc-EEEEEcCCccEEEEeCCCc
Q 001279 637 VLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEE-VIIVLFKDAKISIVGGSSE 702 (1108)
Q Consensus 637 ~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~-~L~s~s~Dg~v~v~d~~~g 702 (1108)
+++ .+.+|...|.++.|+ |++. +|++++.||.|.+|+...+
T Consensus 370 ~~~---~~~~h~~~v~~~~~~----------------------p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 370 LLF---IHGGHTAKISDFSWN----------------------PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEE---ECCCCSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEECHH
T ss_pred eEE---EcCCCCCCceEEEEC----------------------CCCCCEEEEEECCCCEEEeEcccc
Confidence 442 456799999999999 4455 8999999999999998653
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=2.4e-23 Score=242.19 Aligned_cols=226 Identities=13% Similarity=0.129 Sum_probs=143.9
Q ss_pred CCCCCceEEEEc---CCC-CEEEEEECCCcEEEEecCCc----------ceEEeCCCCCCEEEEE---------------
Q 001279 33 GIPATASILAFD---HIQ-RLLAIATLDGRIKVIGGDGI----------EGLLISPSQLPYKNLE--------------- 83 (1108)
Q Consensus 33 G~~~~is~la~s---p~~-~~LA~Gs~dG~I~iw~~~~~----------~~~~~~~h~~~V~~l~--------------- 83 (1108)
..+....++++. |++ .++|+|. |+.|++|..... ..+....+..++..+.
T Consensus 13 pl~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (393)
T 4gq1_A 13 PLNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGD 91 (393)
T ss_dssp CTTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-----
T ss_pred cCCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCC
Confidence 344455666663 443 4666665 778999975211 1111222333444444
Q ss_pred -----EeeCCCEEEEEeCCCcEEEEEcCCCeeeee-----e-cCCCCeeEEEEec--------CCCEEEEEeCCCcEEEE
Q 001279 84 -----FLQNQGFLISITNDNEIQVWSLESRSLACC-----L-KWESNITAFSVIS--------GSHFMYIGDENGLMSVI 144 (1108)
Q Consensus 84 -----fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~-----~-~~~~~Itsl~~~~--------~~~~l~vg~~dg~V~vw 144 (1108)
+.+++.+|++++.|++|++||++++..... + .|.+.|++++|+| ++++|++|+.|++|+||
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 445667899999999999999998865432 2 5889999999998 78899999999999999
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeC-CCcccc
Q 001279 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG-GKDLQL 223 (1108)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~-~~~~~~ 223 (1108)
++... .... .+..|. .+|.+++|+|. +..+|++++.||+|++||+.+++...... +.....
T Consensus 172 d~~~~--~~~~---~~~~~~------------~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 172 RLTDE--GPIL---AGYPLS------------SPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEETT--EEEE---EEEECS------------SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred ECCCC--ceee---eecCCC------------CCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 99753 2221 133343 77999999995 34579999999999999999886543221 100000
Q ss_pred cccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
..... ..............+...|.++.|..++|..|++++.|+++++||+...
T Consensus 234 ~~~~s-----~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 234 PWLLT-----LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp CCSEE-----EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred ceEEe-----cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 00000 0000000001112236789999998899999999999999999998754
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=3e-22 Score=235.72 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=146.5
Q ss_pred CCCCceEEE---EcCCCCEEEEEEC--------------CC--cEEEEecCCc--ceEEeCCCCCCEEEEEEeeCCCEEE
Q 001279 34 IPATASILA---FDHIQRLLAIATL--------------DG--RIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLI 92 (1108)
Q Consensus 34 ~~~~is~la---~sp~~~~LA~Gs~--------------dG--~I~iw~~~~~--~~~~~~~h~~~V~~l~fs~d~~~L~ 92 (1108)
....+..++ |+|++..+.+.+. ++ .|.+|+..+. ..+....+...+.+++|+|++.+++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAI 138 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEE
Confidence 345567788 8898887766443 23 4444444322 3333333445567999999766777
Q ss_pred EEeCCCcEEEEEcCCCeeeeee------cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001279 93 SITNDNEIQVWSLESRSLACCL------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1108)
Q Consensus 93 S~s~d~~I~vWd~~s~~~~~~~------~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1108)
+++.++.|++||+.+++..... .|...|++++|++++.++++++.++.|++|+++. ++... .+..+.
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~--~~~~~---~~~~~~-- 211 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT--LAYKA---TVDLTG-- 211 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT--CCEEE---EEECSS--
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC--ceEEE---EEcCCC--
Confidence 7777899999999999877632 4667899999999999999999999999999764 34432 244443
Q ss_pred cccCCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCC
Q 001279 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1108)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1108)
..+.+++|+| ++.+++++. .++.|++||+.+++.+.....
T Consensus 212 ----------~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------------------------- 252 (433)
T 3bws_A 212 ----------KWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK--------------------------- 252 (433)
T ss_dssp ----------SSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC---------------------------
T ss_pred ----------CCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC---------------------------
Confidence 6799999998 677675554 799999999999987665433
Q ss_pred CCCCCceeEEEeecCCCCEEEEEE--------ccCcEEEEecCCC
Q 001279 246 QPEEKEISALCWASSSGSILAVGY--------IDGDILLWNTSTT 282 (1108)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~--------~DG~I~lWd~~~~ 282 (1108)
...+.+++|. |+|+.|++++ .||.|++||+.++
T Consensus 253 ---~~~~~~~~~~-~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 253 ---IGLPRGLLLS-KDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp ---CSEEEEEEEC-TTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred ---CCCceEEEEc-CCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 4458899985 9999999988 4889999998643
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-23 Score=265.35 Aligned_cols=207 Identities=15% Similarity=0.233 Sum_probs=169.6
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCc---ceEEeCCCCCCEEEEEEeeC--CCEEEEEeCCCcEEEEE
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQN--QGFLISITNDNEIQVWS 104 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d--~~~L~S~s~d~~I~vWd 104 (1108)
...||.+.|++++|+|++++||+|+.||.|+||+.... ......+|.++|++++|+++ +.+|++++.|+.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 34689999999999999999999999999999998632 33466789999999999988 89999999999999999
Q ss_pred cCCCe--eeeee-cCCCCeeEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 105 LESRS--LACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 105 ~~s~~--~~~~~-~~~~~Itsl~~~~~--~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
+.+++ .+..+ .|...|++++|+|+ ++++++|+.||.|++|++........ ..+.+|. ..|
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~---~~~~~~~------------~~v 148 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP---IIIDAHA------------IGV 148 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC---EEEECCS------------SCE
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce---eEeecCC------------Cce
Confidence 99986 33333 68899999999999 99999999999999999876422222 2244444 789
Q ss_pred EEEecccCC-----------CCCEEEEEECCCeEEEEEccCCe----EE-EEeCCCcccccccccCCCCCCCCCcccCcC
Q 001279 180 VGVLPHPNS-----------SGNRVLIAYENALVILWDVSEAQ----II-FVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1108)
Q Consensus 180 ~~v~f~P~~-----------~~~~ll~~~~dg~V~lWdl~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1108)
.++.|+|.. ++..+++|+.||.|++||+.++. .. ...+|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h------------------------- 203 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH------------------------- 203 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-------------------------
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-------------------------
Confidence 999999842 36679999999999999998762 22 23344
Q ss_pred CCCCCCCceeEEEeecCC---CCEEEEEEccCcEEEEecCCC
Q 001279 244 EHQPEEKEISALCWASSS---GSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 244 ~~~~~~~~Vtsl~w~spd---g~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...|++++|. |+ +.+|++|+.||.|++||+.++
T Consensus 204 -----~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 204 -----SDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -----SSCEEEEEEC-CCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred -----CCcEEEEEec-cCCCCCCEEEEEecCCEEEEecCCCC
Confidence 7789999986 99 899999999999999998754
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=6.8e-22 Score=229.33 Aligned_cols=185 Identities=11% Similarity=0.134 Sum_probs=147.5
Q ss_pred CCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEE-EEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEE
Q 001279 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFL-ISITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L-~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~ 125 (1108)
+.++++|+.|+.|++||....+.+....+...+.+++|+|++.+| ++++.|+.|++||+.+++.+..+.....+.+++|
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 357888999999999999877766555555679999999999887 5666899999999999999988887779999999
Q ss_pred ecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE-EEEECCCeEE
Q 001279 126 ISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV-LIAYENALVI 203 (1108)
Q Consensus 126 ~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l-l~~~~dg~V~ 203 (1108)
+|+++++++++ .++.|++|++.. ++.... +..+ ..+.+++|+| ++++| ++++.++.|+
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~--~~~~~~---~~~~-------------~~~~~~~~s~--dg~~l~~~~~~~~~v~ 141 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTS--NTVAGT---VKTG-------------KSPLGLALSP--DGKKLYVTNNGDKTVS 141 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT--TEEEEE---EECS-------------SSEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred CCCCCEEEEEECCCCEEEEEECCC--CeEEEE---EeCC-------------CCcceEEECC--CCCEEEEEeCCCCEEE
Confidence 99999886555 679999998764 444422 3222 4589999988 67766 6777799999
Q ss_pred EEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEE-EEEEccCcEEEEecCCC
Q 001279 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL-AVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 204 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l-~sg~~DG~I~lWd~~~~ 282 (1108)
+||+.+++....... ...+.+++|. |+|+.| ++++.+|.|++||+.++
T Consensus 142 ~~d~~~~~~~~~~~~------------------------------~~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 142 VINTVTKAVINTVSV------------------------------GRSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp EEETTTTEEEEEEEC------------------------------CSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCcEEEEEec------------------------------CCCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 999999987665433 3456888975 999887 67778999999998643
No 119
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=1.9e-23 Score=243.82 Aligned_cols=156 Identities=11% Similarity=0.009 Sum_probs=118.9
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeec-cCCCCC-eEEEEEEeCCCeEEEE---ecCceEEEEE
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-AGSRAP-VSTLSFCFINSSLAVG---NEFGLVYIYN 564 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l-~~h~~~-Vt~lafs~d~~~Lasg---~~dG~V~lw~ 564 (1108)
++++++++|++|+.||.|++||+..+... ..+ ..|... +.+++|+|++++|++| +.||.|++|+
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTVV-----------AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEEE-----------EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCcee-----------eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 45667779999999999999999887644 223 466655 8999999999999999 7899999999
Q ss_pred ecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEE-EEeCCCeEEEEEccCceE-EEEee
Q 001279 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLA-VGFECGRVAVLDMNLLSV-LFFTD 642 (1108)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~La-vGs~dG~V~vwd~~~~~~-~~~~~ 642 (1108)
+...... .......|...|++++|+|++++|+ +|+.||.|++||+.++.. +....
T Consensus 252 ~~~~~~~-----------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 252 TKHLEEP-----------------------LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp TTBCSSC-----------------------SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred CccccCC-----------------------ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9775221 0111235778899999999999886 566899999999998773 32222
Q ss_pred cCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcce
Q 001279 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1108)
Q Consensus 643 ~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~ 704 (1108)
.+. |..+|.+++|++ ++.+++ +.|+.+.+|+..++.+
T Consensus 309 ~~~-~~~~v~~~~~sp----------------------~~~~~~--s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 309 MFS-SKESQRGMGYMP----------------------KRGLEV--NKCEIARFYKLHERKC 345 (402)
T ss_dssp EEC-CSSCCSEEEECC----------------------GGGSCG--GGTEEEEEEEEETTEE
T ss_pred ccc-cCCcccceEEec----------------------ccccce--ecceeEEEEEcCCCcE
Confidence 222 779999999994 355554 5677999999877553
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-22 Score=241.05 Aligned_cols=200 Identities=14% Similarity=0.111 Sum_probs=158.7
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcc---eE-EeC--------------------------------------
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GL-LIS-------------------------------------- 73 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~---~~-~~~-------------------------------------- 73 (1108)
..+.+++|+|+|++|+++ .++.|++|+....+ .+ ...
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999977766 47899999985444 22 111
Q ss_pred ----------------CCCCCEEEEEEeeCCCEE-EEEeCCCcEEEEEcC--CCeeeeee---cCCCCeeEEEEecCCCE
Q 001279 74 ----------------PSQLPYKNLEFLQNQGFL-ISITNDNEIQVWSLE--SRSLACCL---KWESNITAFSVISGSHF 131 (1108)
Q Consensus 74 ----------------~h~~~V~~l~fs~d~~~L-~S~s~d~~I~vWd~~--s~~~~~~~---~~~~~Itsl~~~~~~~~ 131 (1108)
+|...|.+++|+|++.+| ++++.|+.|+|||+. +++.+..+ .+...|++++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 244479999999999996 888899999999999 77776665 56789999999999999
Q ss_pred EEEEeCCCcEEEEEEecCCCeeee-eceeecccccccccCCCCCCCCCeEEEecccC-CCCCEEEEEECCCeEEEEEccC
Q 001279 132 MYIGDENGLMSVIKYDADEGKLFQ-LPYNISADALSEKAGFPLLSHQPVVGVLPHPN-SSGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 132 l~vg~~dg~V~vw~~d~~~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~-~~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
|++|+.+|.|++|++... .... ....+.+|. ..|.+++|+|. ..+.+|++++.|+.|++||+.+
T Consensus 164 l~~~~~~g~v~~~~~~~~--~~~~~~~~~~~~h~------------~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSI--PEEKFTQEPILGHV------------SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp EEEEETTSEEEEEETTSC--CCSSCCCCCSEECS------------SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred EEEEeCCCcEEEEecCCc--ccccccceeeeccc------------CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 999999999988887542 2211 011244444 78999999993 1177899999999999999998
Q ss_pred CeEEEE--eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 210 AQIIFV--GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 210 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
++.+.. .+| ...|++++|. +|.+|++|+.||.|++||+.++
T Consensus 230 ~~~~~~~~~~h------------------------------~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 230 CFIVDKWLFGH------------------------------KHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp TTCEEEECCCC------------------------------SSCEEEEEEC--STTEEEEEESSSEEEEEETTTC
T ss_pred CceeeeeecCC------------------------------CCceEEEEEC--CCCEEEEEeCCCeEEEEECCCC
Confidence 865533 345 7789999974 9999999999999999999765
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=1.6e-23 Score=243.72 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=88.3
Q ss_pred EecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC------CCCCEEEEEEC
Q 001279 125 VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN------SSGNRVLIAYE 198 (1108)
Q Consensus 125 ~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~------~~~~~ll~~~~ 198 (1108)
+.+++.++++|+.|++|+||+.+..+....+....+.+|. +.|.+|+|+|. .++.+|++++.
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~------------~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH------------NFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS------------SCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC------------CceEEEEEccccccccCCCCCEEEEEEC
Confidence 3445668999999999999998863211111111244555 89999999872 25778999999
Q ss_pred CCeEEEEEccCCe-EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC-CEEEEEEccCcEEE
Q 001279 199 NALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILL 276 (1108)
Q Consensus 199 dg~V~lWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~DG~I~l 276 (1108)
|++|+|||+.++. +....+| ...|.+++|. |++ .+|++|+.||+|++
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~------------------------------~~~v~~v~~~-p~~~~~l~~~~~d~~v~~ 213 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPL------------------------------SSPGISVQFR-PSNPNQLIVGERNGNIRI 213 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEEC------------------------------SSCEEEEEEE-TTEEEEEEEEETTSEEEE
T ss_pred CCeEEEEECCCCceeeeecCC------------------------------CCCcEEEEEC-CCCCceEEecCCCCEEEE
Confidence 9999999998775 4556666 7789999987 877 47999999999999
Q ss_pred EecCCC
Q 001279 277 WNTSTT 282 (1108)
Q Consensus 277 Wd~~~~ 282 (1108)
||+.++
T Consensus 214 wd~~t~ 219 (393)
T 4gq1_A 214 FDWTLN 219 (393)
T ss_dssp EETTCC
T ss_pred EECCCC
Confidence 999765
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=2.1e-21 Score=225.15 Aligned_cols=329 Identities=15% Similarity=0.077 Sum_probs=225.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEE-EEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001279 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM-YIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l-~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1108)
..+++++.|+.|++||+.+++++..+.+...+.+++|+|+++++ ++++.++.|++|++.. +++... +..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~---~~~~---- 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIAT---VPAG---- 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEE---EECS----
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC--CeEEEE---EECC----
Confidence 35777888999999999999999888877789999999999987 5666899999998754 455432 3321
Q ss_pred ccCCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCC
Q 001279 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1108)
..|.+++|+| ++.+|+++. .++.|++||+.+++.+....+
T Consensus 74 ---------~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---------------------------- 114 (391)
T 1l0q_A 74 ---------SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---------------------------- 114 (391)
T ss_dssp ---------SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------------
T ss_pred ---------CCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEEEeC----------------------------
Confidence 4699999998 677675554 669999999999988765543
Q ss_pred CCCCceeEEEeecCCCCEE-EEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCC
Q 001279 247 PEEKEISALCWASSSGSIL-AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNI 325 (1108)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l-~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~ 325 (1108)
...+.+++|. |+|+.| ++++.|+.|++||+.+++. + ..+
T Consensus 115 --~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~-----------~--------------~~~------------ 154 (391)
T 1l0q_A 115 --GKSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKAV-----------I--------------NTV------------ 154 (391)
T ss_dssp --SSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEE-----------E--------------EEE------------
T ss_pred --CCCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCcE-----------E--------------EEE------------
Confidence 4568899985 999987 6788899999999864310 0 000
Q ss_pred CceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEec
Q 001279 326 DGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDN 405 (1108)
Q Consensus 326 ~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~ 405 (1108)
..+ . .+
T Consensus 155 ------~~~-~---------------------------------~~---------------------------------- 160 (391)
T 1l0q_A 155 ------SVG-R---------------------------------SP---------------------------------- 160 (391)
T ss_dssp ------ECC-S---------------------------------SE----------------------------------
T ss_pred ------ecC-C---------------------------------Cc----------------------------------
Confidence 000 0 00
Q ss_pred cceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccC
Q 001279 406 ASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSP 485 (1108)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~ 485 (1108)
T Consensus 161 -------------------------------------------------------------------------------- 160 (391)
T 1l0q_A 161 -------------------------------------------------------------------------------- 160 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCcE-EEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEe---cCceEE
Q 001279 486 VPITKCHSVDRV-YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN---EFGLVY 561 (1108)
Q Consensus 486 ~~~~~~s~~~~l-latgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~---~dG~V~ 561 (1108)
..++++++++. +++++.|+.|++||+.++.+... + .|...+.+++|+|++++|++++ .++.|+
T Consensus 161 -~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-----------~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 161 -KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT-----------V-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp -EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-----------E-ECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred -ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE-----------E-ecCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 00134455544 47888999999999988764411 1 2345789999999999999888 689999
Q ss_pred EEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEE-EEEeCCCeEEEEEccCceEEEE
Q 001279 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL-AVGFECGRVAVLDMNLLSVLFF 640 (1108)
Q Consensus 562 lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~L-avGs~dG~V~vwd~~~~~~~~~ 640 (1108)
+|++... .++..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++++..
T Consensus 228 ~~d~~~~-------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 228 MIDTGTN-------------------------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp EEETTTT-------------------------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCC-------------------------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 9998765 2344444444 58999999999877 6778999999999999988754
Q ss_pred eecCCCCCCceE---EEEeeecccCcc-ccCCCCCCCCCCCCCCC--ccEEEEEcCCccEEEEeCCCcce
Q 001279 641 TDDISGSSSPII---SMTWTEFKNTHS-LAKNPNHSEREVPVNPA--EEVIIVLFKDAKISIVGGSSENM 704 (1108)
Q Consensus 641 ~~~~~~h~~~V~---~l~fs~~~~~~~-~~~~p~~~~~~~~~~p~--~~~L~s~s~Dg~v~v~d~~~g~~ 704 (1108)
... |..+.. .+.+.+...... ..+... ......|- ...+...+.|..+.+||...|..
T Consensus 282 ~~~---~~~~~~~~~~~~~~~~~~~~~~a~fs~~---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 282 MAV---GKNPYASGQFIGSIPVQPVYPSADFKSN---ITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EEC---SSSEECCSSCEEECSSCCCCCBCCEEES---CCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred EEC---CcCCCccceeeecccccccccccccccc---cccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 433 444322 122221100000 000000 00000011 13466677789999999877764
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-22 Score=256.60 Aligned_cols=121 Identities=13% Similarity=0.178 Sum_probs=100.2
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1108)
.|.+.|++++|+|+++++++|+.||.|+||++....+... ..+.+|. .+|++++|+|..++.+|+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~---~~l~~h~------------~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI---DTLTGHE------------GPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE---EEECCCS------------SCEEEEEECCTTSCSEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc---eeccCCc------------CceEEEEecCCCCCCEEE
Confidence 6889999999999999999999999999999985433443 3366665 889999998854588999
Q ss_pred EEECCCeEEEEEccCCeE---EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC--CCEEEEEE
Q 001279 195 IAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1108)
Q Consensus 195 ~~~~dg~V~lWdl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd--g~~l~sg~ 269 (1108)
+|+.||.|++||+.+++. ....+| ...|++++|. |+ +..+++|+
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h------------------------------~~~V~~v~~s-p~~~~~~l~sgs 120 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVH------------------------------SASVNSVQWA-PHEYGPLLLVAS 120 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSCEEEEEEC-CGGGCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcccccccccCC------------------------------CCCeEEEEEC-CCCCCCEEEEEe
Confidence 999999999999999863 333344 7789999985 88 89999999
Q ss_pred ccCcEEEEecCC
Q 001279 270 IDGDILLWNTST 281 (1108)
Q Consensus 270 ~DG~I~lWd~~~ 281 (1108)
.||.|++||+.+
T Consensus 121 ~dg~I~vwdl~~ 132 (753)
T 3jro_A 121 SDGKVSVVEFKE 132 (753)
T ss_dssp TTSEEEEEECCS
T ss_pred CCCcEEEEEeec
Confidence 999999999864
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-22 Score=231.34 Aligned_cols=158 Identities=9% Similarity=0.066 Sum_probs=116.1
Q ss_pred eeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccc
Q 001279 85 LQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA 164 (1108)
Q Consensus 85 s~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~ 164 (1108)
.+++.+|++++.|+.|++||+.+++.+..+. ...|.++.++|. +++|+.|++|++|+.+. .+. .|.+....
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~---~~~--~~~~~~~~ 115 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGN---QIT--ILDSKTNK 115 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTT---EEE--EEETTTCC
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccC---ceE--EeecCCcc
Confidence 4577899999999999999999998877765 456777888887 99999999999998652 111 01111100
Q ss_pred cccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCC
Q 001279 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1108)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1108)
.... ....+.+.|.+++|+|..++.++++++.||.|++||+.+++.......
T Consensus 116 ~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------------------------- 167 (343)
T 3lrv_A 116 VLRE--IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA-------------------------- 167 (343)
T ss_dssp EEEE--EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC--------------------------
T ss_pred eeEE--eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec--------------------------
Confidence 0000 001122679999999954678899999999999999999987554321
Q ss_pred CCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 245 HQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 245 ~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.....|++++|. |+|.+|++|+.||.|++||+.++
T Consensus 168 --~~~~~i~~~~~~-pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 168 --KSDVEYSSGVLH-KDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp --CSSCCCCEEEEC-TTSCEEEEECTTSCEEEEESSCT
T ss_pred --CCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCC
Confidence 014569999985 99999999999999999999754
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.89 E-value=1.1e-20 Score=222.22 Aligned_cols=354 Identities=12% Similarity=0.095 Sum_probs=235.6
Q ss_pred CCCceEEEEcCCCCEEEEEE-CCCcEEEEecCCcceEEeCCCCCCEEEEE---EeeCCCEEEEEe--------------C
Q 001279 35 PATASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLLISPSQLPYKNLE---FLQNQGFLISIT--------------N 96 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~~~~~~~~~h~~~V~~l~---fs~d~~~L~S~s--------------~ 96 (1108)
...|..+.++|....++... .....+++.. .....+..++ |+|++..++.++ .
T Consensus 27 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (433)
T 3bws_A 27 GTEIVKFSIHPYKGTVIRLGEEILPFKVLEM---------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPE 97 (433)
T ss_dssp CEEEEEEEEECCTTCEEEETTEECCEEEEEE---------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGG
T ss_pred CcEEEEEecccccCceEEcCceecceeeeec---------ccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccC
Confidence 34466777888654433331 1111222221 2233455555 666555544432 3
Q ss_pred CCcEEEEEc--CCC--eeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee-ce-eecccccccccC
Q 001279 97 DNEIQVWSL--ESR--SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL-PY-NISADALSEKAG 170 (1108)
Q Consensus 97 d~~I~vWd~--~s~--~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~-~~-~i~~~~~~~~~~ 170 (1108)
++.+.||.+ .++ +.+..+.....+.+++|+|++.++++++.++.|++|+++. ++.... +. .+.+|.
T Consensus 98 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~------ 169 (433)
T 3bws_A 98 ELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKL------ 169 (433)
T ss_dssp GGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTC------
T ss_pred CCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccC------
Confidence 343355544 335 5556666667788999999777888888899999999764 344321 00 112222
Q ss_pred CCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCCCCC
Q 001279 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1108)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1108)
..|.+++|+| ++..+++++.|+.|++||+.+++.+... .| .
T Consensus 170 ------~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~------------------------------~ 211 (433)
T 3bws_A 170 ------GFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLT------------------------------G 211 (433)
T ss_dssp ------CEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECS------------------------------S
T ss_pred ------CceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCC------------------------------C
Confidence 6799999977 6777889999999999999998765443 33 5
Q ss_pred CceeEEEeecCCCCEEEEE-EccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCce
Q 001279 250 KEISALCWASSSGSILAVG-YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR 328 (1108)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg-~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~ 328 (1108)
..+.+++|. |++..++++ +.||.|++||+.++.. +.. + .
T Consensus 212 ~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~-----------~~~--------------~----------~---- 251 (433)
T 3bws_A 212 KWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLE-----------IRK--------------T----------D---- 251 (433)
T ss_dssp SSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEE-----------EEE--------------C----------C----
T ss_pred CCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcE-----------EEE--------------e----------c----
Confidence 678999986 999988554 4799999999864310 000 0 0
Q ss_pred EEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccce
Q 001279 329 LFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASL 408 (1108)
Q Consensus 329 llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~ 408 (1108)
....+..
T Consensus 252 --------------------------------------~~~~~~~----------------------------------- 258 (433)
T 3bws_A 252 --------------------------------------KIGLPRG----------------------------------- 258 (433)
T ss_dssp --------------------------------------CCSEEEE-----------------------------------
T ss_pred --------------------------------------CCCCceE-----------------------------------
Confidence 0000001
Q ss_pred eeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCc
Q 001279 409 TTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPI 488 (1108)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~ 488 (1108)
T Consensus 259 -------------------------------------------------------------------------------- 258 (433)
T 3bws_A 259 -------------------------------------------------------------------------------- 258 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcEEEEEe--------cCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeE-EEEecCce
Q 001279 489 TKCHSVDRVYLAGY--------HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL-AVGNEFGL 559 (1108)
Q Consensus 489 ~~~s~~~~llatgs--------~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~L-asg~~dG~ 559 (1108)
++++|+++.+++++ .||.|++||+.++.+... ..|...+.+++|+|++++| ++++.++.
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT------------IGPPGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE------------EEEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee------------ccCCCCcceEEECCCCCEEEEEecCCCE
Confidence 13344454555554 588999999987764421 1333478999999999755 66688999
Q ss_pred EEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeC---------------C
Q 001279 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE---------------C 624 (1108)
Q Consensus 560 V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~---------------d 624 (1108)
|++|++.... +...+ .+...+.+++|+|++++|++++. |
T Consensus 327 v~v~d~~~~~-------------------------~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d 380 (433)
T 3bws_A 327 IEVYDLKEKK-------------------------VQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL 380 (433)
T ss_dssp EEEEETTTTE-------------------------EEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred EEEEECCCCc-------------------------EEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence 9999998641 23333 46788999999999999988876 5
Q ss_pred CeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcC-CccEEEEeCC
Q 001279 625 GRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK-DAKISIVGGS 700 (1108)
Q Consensus 625 G~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~-Dg~v~v~d~~ 700 (1108)
|.|++||+.+++++.... +...+.++.|+ |++.+|++++. |+.|.+||.+
T Consensus 381 g~v~~~d~~~~~~~~~~~----~~~~~~~~~~s----------------------~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 381 GKVYVIDTTTDTVKEFWE----AGNQPTGLDVS----------------------PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CEEEEEETTTTEEEEEEE----CSSSEEEEEEC----------------------TTSCEEEEEETTTTEEEEEEET
T ss_pred eEEEEEECCCCcEEEEec----CCCCCceEEEc----------------------CCCCEEEEEECCCCeEEEEEec
Confidence 799999999998875433 24578999998 56778887764 9999999975
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=4e-21 Score=232.13 Aligned_cols=205 Identities=11% Similarity=0.129 Sum_probs=149.2
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc--CCCeeeeeecCC
Q 001279 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL--ESRSLACCLKWE 117 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~--~s~~~~~~~~~~ 117 (1108)
+.+|+|++.++++++.|+.|.+||....+++........+..++|+||+++|++++.|+.|.+||+ .+++++..+...
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence 335899999999999999999999987666533321123889999999999999999999999999 888888888877
Q ss_pred CCeeEEEEec----CCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 118 SNITAFSVIS----GSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 118 ~~Itsl~~~~----~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
..+..++|+| +++++++++. +++|.||+..+ +++.+. ++.+..... .........+.++.++|. .+..
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t--~~~~~~---i~~~g~~~~-~~~~~~~~~v~~i~~s~~-~~~~ 294 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET--LEPKQI---VSTRGMTVD-TQTYHPEPRVAAIIASHE-HPEF 294 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT--CCEEEE---EECCEECSS-SCCEESCCCEEEEEECSS-SSEE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc--ccccee---ecccCcccC-ccccccCCceEEEEECCC-CCEE
Confidence 7899999999 9999999985 89999998653 444432 332110000 000001136899999884 3344
Q ss_pred EEEEECCCeEEEEEccCCeEEE--EeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-
Q 001279 193 VLIAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY- 269 (1108)
Q Consensus 193 ll~~~~dg~V~lWdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~- 269 (1108)
+++...++.|.+||+.+.+.+. ...+ ...+..++|. |+|+++++++
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~------------------------------~~~~~~~~~s-pdg~~l~va~~ 343 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGA------------------------------APFLHDGGWD-SSHRYFMTAAN 343 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEEC------------------------------CSSCCCEEEC-TTSCEEEEEEG
T ss_pred EEEECCCCeEEEEEecCCCcceeEEecc------------------------------CcCccCceEC-CCCCEEEEEec
Confidence 5667778999999998764322 2222 3345667864 9999877665
Q ss_pred ccCcEEEEecCCC
Q 001279 270 IDGDILLWNTSTT 282 (1108)
Q Consensus 270 ~DG~I~lWd~~~~ 282 (1108)
.+++|.+||..++
T Consensus 344 ~~~~v~v~D~~tg 356 (543)
T 1nir_A 344 NSNKVAVIDSKDR 356 (543)
T ss_dssp GGTEEEEEETTTT
T ss_pred CCCeEEEEECCCC
Confidence 5899999998754
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.8e-22 Score=227.39 Aligned_cols=186 Identities=11% Similarity=0.095 Sum_probs=146.1
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC---------CCeeeee
Q 001279 43 FDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE---------SRSLACC 113 (1108)
Q Consensus 43 ~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~---------s~~~~~~ 113 (1108)
+.+++.+||+|+.||.|++||....+.+.... ..+|.++.|+|+ +++++.|++|++|+.. +++.+..
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~ 119 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLRE 119 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence 34678999999999999999997655442222 567888889988 9999999999999765 4444444
Q ss_pred e--cCCCCeeEEEEec--CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 114 L--KWESNITAFSVIS--GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 114 ~--~~~~~Itsl~~~~--~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
+ .|...|++++++| +++++++|+.||.|++|++... +.... ...+. ...|.+++|+| +
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~---~~~~~-----------~~~i~~~~~~p--d 181 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD--SQYIV---HSAKS-----------DVEYSSGVLHK--D 181 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS--CEEEE---ECCCS-----------SCCCCEEEECT--T
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC--cEEEE---EecCC-----------CCceEEEEECC--C
Confidence 4 4557899999999 9999999999999999998753 33321 21111 15699999999 7
Q ss_pred CCEEEEEECCCeEEEEEccCCeEE--EEeC-CCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQII--FVGG-GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1108)
+.+|++|+.||.|++||+++++.. .+.+ | ...|++++|. |+|.+|+
T Consensus 182 g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h------------------------------~~~v~~l~fs-~~g~~l~ 230 (343)
T 3lrv_A 182 SLLLALYSPDGILDVYNLSSPDQASSRFPVDE------------------------------EAKIKEVKFA-DNGYWMV 230 (343)
T ss_dssp SCEEEEECTTSCEEEEESSCTTSCCEECCCCT------------------------------TSCEEEEEEC-TTSSEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCCCccEEeccC------------------------------CCCEEEEEEe-CCCCEEE
Confidence 888999999999999999988654 3333 4 7789999985 9999999
Q ss_pred EEEccCcEEEEecCCC
Q 001279 267 VGYIDGDILLWNTSTT 282 (1108)
Q Consensus 267 sg~~DG~I~lWd~~~~ 282 (1108)
+++ |+.|++||+...
T Consensus 231 s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 231 VEC-DQTVVCFDLRKD 245 (343)
T ss_dssp EEE-SSBEEEEETTSS
T ss_pred EEe-CCeEEEEEcCCC
Confidence 999 559999999754
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=8.8e-21 Score=208.29 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=107.7
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCC---CCCeEEEEEEeCCCeE------------EEEecCc
Q 001279 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGS---RAPVSTLSFCFINSSL------------AVGNEFG 558 (1108)
Q Consensus 494 ~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h---~~~Vt~lafs~d~~~L------------asg~~dG 558 (1108)
++.+|++|+.|++|||||+.++.+.. .+.+| ...|.+++|+|++.++ ++|+.|+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~-----------tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLK-----------KMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEE-----------EEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEE-----------EEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 45599999999999999999988652 23332 3478889999999886 5688899
Q ss_pred eEEEEEecCCCCCccccccccCccceeecccCCcceEEEEE-----eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 001279 559 LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-----SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1108)
Q Consensus 559 ~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~ 633 (1108)
+|++|+..+.. ++.++ .+|...+.+..++ +.++|+|+.||+|+|||+.
T Consensus 261 tIklWd~~tgk-------------------------~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~ 313 (356)
T 2w18_A 261 QLIVINPKTTL-------------------------SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLL 313 (356)
T ss_dssp EEEEEETTTTE-------------------------EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEEEEECCCCE-------------------------EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECC
Confidence 99999987651 22222 3555555555554 7899999999999999999
Q ss_pred CceEEEEeecCCCCCCceE-EEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 634 LLSVLFFTDDISGSSSPII-SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 634 ~~~~~~~~~~~~~h~~~V~-~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
+++++ +.+.+|...|. .++|+ |++.+|++|+.|++|+|||.
T Consensus 314 tGk~l---~tL~gH~~~vvs~vafS----------------------PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 LGQCT---ALLPPVSDQHWSFVKWS----------------------GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCSEE---EEECCC--CCCCEEEEC----------------------SSSSEEEEECTTSCEEEEEE
T ss_pred CCcEE---EEecCCCCCeEEEEEEC----------------------CCCCEEEEEECCCcEEEecC
Confidence 99988 45667887766 58999 66899999999999999985
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=1.6e-20 Score=206.25 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=74.7
Q ss_pred EEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCccccc
Q 001279 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1108)
Q Consensus 497 llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1108)
.+++|+.|++|++||..++.+...+.+. . ..+|...+.+.++ ++.++|+|+.||+|+|||+...
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~-----~-p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tG-------- 315 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYC-----L-PPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLG-------- 315 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEEC-----C-CTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEee-----c-cCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCC--------
Confidence 5789999999999999988754222111 0 2366555544444 4889999999999999999886
Q ss_pred cccCccceeecccCCcceEEEEEeecCcCEE-EEEEcCCCCEEEEEeCCCeEEEEEc
Q 001279 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVR-ALQFTSSGAKLAVGFECGRVAVLDM 632 (1108)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt-slafspdg~~LavGs~dG~V~vwd~ 632 (1108)
+++.++.+|...+. +++|||||++||+|+.|++|+|||+
T Consensus 316 -----------------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 -----------------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----------------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----------------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 36788888877655 6999999999999999999999996
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=1.5e-20 Score=227.04 Aligned_cols=351 Identities=9% Similarity=0.054 Sum_probs=242.2
Q ss_pred EeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccc
Q 001279 84 FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISAD 163 (1108)
Q Consensus 84 fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~ 163 (1108)
|+|++..+++.+.|++|.+||..+++++..+.....+.+++|+|+++++++++.++.|++|+++...+++.. .++..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~---~i~~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA---EIKIG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE---EEECC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE---EEecC
Confidence 789988888988999999999999999988864444899999999999999999999999998423345443 24321
Q ss_pred ccccccCCCCCCCCCeEEEecccC--CCCCEEEEEE-CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCccc
Q 001279 164 ALSEKAGFPLLSHQPVVGVLPHPN--SSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1108)
Q Consensus 164 ~~~~~~~~~~~~~~~V~~v~f~P~--~~~~~ll~~~-~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1108)
..+.+++|+|. .+|++|+++. .+++|.|||..+.+++..........
T Consensus 222 -------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~----------------- 271 (543)
T 1nir_A 222 -------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV----------------- 271 (543)
T ss_dssp -------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-----------------
T ss_pred -------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc-----------------
Confidence 44899999871 1477787776 58999999999988765542100000
Q ss_pred CcCCCCCC-CCceeEEEeecCCCC-EEEEEEccCcEEEEecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecc
Q 001279 241 GISEHQPE-EKEISALCWASSSGS-ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTN 318 (1108)
Q Consensus 241 ~~~~~~~~-~~~Vtsl~w~spdg~-~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~ 318 (1108)
.....+ ...+.++.+. |++. ++++...+|.|.+||..+.... .+..+
T Consensus 272 --~~~~~~~~~~v~~i~~s-~~~~~~~vs~~~~g~i~vvd~~~~~~l-----------------------~~~~i----- 320 (543)
T 1nir_A 272 --DTQTYHPEPRVAAIIAS-HEHPEFIVNVKETGKVLLVNYKDIDNL-----------------------TVTSI----- 320 (543)
T ss_dssp --SSCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEECTTSSSC-----------------------EEEEE-----
T ss_pred --CccccccCCceEEEEEC-CCCCEEEEEECCCCeEEEEEecCCCcc-----------------------eeEEe-----
Confidence 000000 3368888864 7665 5667778899999998643100 00000
Q ss_pred cccccCCCceEEEEeCCCCCCcceEEEEeccccccccccceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCC
Q 001279 319 KESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPG 398 (1108)
Q Consensus 319 ~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G 398 (1108)
. ....+
T Consensus 321 ----------------------------~-------------------~~~~~--------------------------- 326 (543)
T 1nir_A 321 ----------------------------G-------------------AAPFL--------------------------- 326 (543)
T ss_dssp ----------------------------E-------------------CCSSC---------------------------
T ss_pred ----------------------------c-------------------cCcCc---------------------------
Confidence 0 00000
Q ss_pred eEEEEeccceeeeccccCCCCCCCCccCCccccCCCCcceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccc
Q 001279 399 QLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPL 478 (1108)
Q Consensus 399 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~ 478 (1108)
T Consensus 327 -------------------------------------------------------------------------------- 326 (543)
T 1nir_A 327 -------------------------------------------------------------------------------- 326 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccCCCccccCCCCcEE-EEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeC-CCeEEEEe-
Q 001279 479 SGGVPSPVPITKCHSVDRVY-LAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NSSLAVGN- 555 (1108)
Q Consensus 479 ~gg~~~~~~~~~~s~~~~ll-atgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d-~~~Lasg~- 555 (1108)
..++++|+++++ +++..+++|++||..++.+...... ....|......+ ++|+ +..++++.
T Consensus 327 --------~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~-------g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 327 --------HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV-------GKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp --------CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC-------SSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred --------cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc-------CCCCCCCCCccc-CCCCCccEEEeccC
Confidence 011566777755 4556789999999998876532221 112354434333 5777 56667765
Q ss_pred cCceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEe-------CCCeEE
Q 001279 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF-------ECGRVA 628 (1108)
Q Consensus 556 ~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs-------~dG~V~ 628 (1108)
.|++|.||++...... ...++++.++..|.+.+..++|+|++++|.+++ .+++|+
T Consensus 391 ~d~~V~v~d~~~~~~~------------------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 391 GDGSISLIGTDPKNHP------------------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp SSSEEEEEECCTTTCT------------------TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred CCceEEEEEeCCCCCc------------------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 5899999999873210 112457888889999999999999999999998 278999
Q ss_pred EEEccCceEEEEeec------CCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEE-----cCCccEEEE
Q 001279 629 VLDMNLLSVLFFTDD------ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVL-----FKDAKISIV 697 (1108)
Q Consensus 629 vwd~~~~~~~~~~~~------~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~-----s~Dg~v~v~ 697 (1108)
|||+.+.+..+..-. +..+...|..++|+ |++..|+++ +.|+.|.||
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------------~~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN----------------------KRGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEEC----------------------SSSSEEEEEEECCTTSCCEEEEE
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEeccCC----------------------CCCCEEEEEeecCCCCCCeEEEE
Confidence 999998876643211 34577889999999 557777755 358999999
Q ss_pred eCCCcceecCC
Q 001279 698 GGSSENMISSS 708 (1108)
Q Consensus 698 d~~~g~~l~~~ 708 (1108)
|..||+++...
T Consensus 511 D~~t~~~~~~i 521 (543)
T 1nir_A 511 DDKTLKLKAVV 521 (543)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCceEEEee
Confidence 99999987654
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=3.7e-19 Score=224.92 Aligned_cols=223 Identities=12% Similarity=0.062 Sum_probs=152.9
Q ss_pred ccccceeeeeeCC--CCCceEEEEcCCCCEEEEEEC-CC-----cEEEEecCCcceE-EeCCCC----------------
Q 001279 22 ADLNLRIAVHYGI--PATASILAFDHIQRLLAIATL-DG-----RIKVIGGDGIEGL-LISPSQ---------------- 76 (1108)
Q Consensus 22 ~~~~~~~~~~~G~--~~~is~la~sp~~~~LA~Gs~-dG-----~I~iw~~~~~~~~-~~~~h~---------------- 76 (1108)
+.+.++..++.+. ...+.+++|+|||++||+++. || .|++|+.++.+.. +...+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (741)
T 2ecf_A 21 EKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARR 100 (741)
T ss_dssp -CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------
T ss_pred ccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhh
Confidence 3344444443332 567999999999999999998 88 8999999766544 332222
Q ss_pred --------CCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC---eeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEE
Q 001279 77 --------LPYKNLEFLQNQGFLISITNDNEIQVWSLESR---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIK 145 (1108)
Q Consensus 77 --------~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~---~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~ 145 (1108)
..|..++|+|||.+|++++. +.|.+||+.++ +......+...+.+++|+|++++|+.++. +.|++|+
T Consensus 101 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d 178 (741)
T 2ecf_A 101 ERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVID 178 (741)
T ss_dssp ------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEE
T ss_pred hhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEe
Confidence 23889999999999999986 99999999998 66655567788999999999999998874 5788887
Q ss_pred EecCCCeeeeeceeecccccccccCCC----CCCCCCeEEEecccCCCCCEEEEEECCC---------------------
Q 001279 146 YDADEGKLFQLPYNISADALSEKAGFP----LLSHQPVVGVLPHPNSSGNRVLIAYENA--------------------- 200 (1108)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~----~~~~~~V~~v~f~P~~~~~~ll~~~~dg--------------------- 200 (1108)
++. +...+. ...+......+.+ ......+.++.|+| +|++|++++.|+
T Consensus 179 ~~~--g~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 179 LAS--GRQMQL---TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TTT--TEEEEC---CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred cCC--CCEEEe---ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 653 444432 1111100000000 00002257899998 788888887765
Q ss_pred ------------eEEEEEccC-CeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE
Q 001279 201 ------------LVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1108)
Q Consensus 201 ------------~V~lWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1108)
.|.+||+.+ ++...+... ......+.+++| |||+.|++
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~--pDg~~l~~ 302 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLG---------------------------KEQDIYLARVNW--RDPQHLSF 302 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECCC---------------------------SCSSEEEEEEEE--EETTEEEE
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecCC---------------------------CCcceEEEEEEe--CCCCEEEE
Confidence 778888887 765443210 001567889998 89999988
Q ss_pred EEc-----cCcEEEEecCCC
Q 001279 268 GYI-----DGDILLWNTSTT 282 (1108)
Q Consensus 268 g~~-----DG~I~lWd~~~~ 282 (1108)
++. ++.|.+||..++
T Consensus 303 ~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 303 QRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEETTSSEEEEEEEETTTC
T ss_pred EEecccCCeEEEEEEECCCC
Confidence 765 566888887543
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.83 E-value=5.4e-19 Score=206.80 Aligned_cols=194 Identities=10% Similarity=0.069 Sum_probs=144.5
Q ss_pred CceEEEEcCCCC-EEEEEE----CCC----cEEEEec--CCcceE---EeCCCCCCEEEEEEee--------------CC
Q 001279 37 TASILAFDHIQR-LLAIAT----LDG----RIKVIGG--DGIEGL---LISPSQLPYKNLEFLQ--------------NQ 88 (1108)
Q Consensus 37 ~is~la~sp~~~-~LA~Gs----~dG----~I~iw~~--~~~~~~---~~~~h~~~V~~l~fs~--------------d~ 88 (1108)
.+...+|++.+. ++++|+ .|| .|+|||. ...+.+ ....|...+..+++.+ .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 556677777775 677887 468 8999999 655443 3556777788777765 15
Q ss_pred CEEEEEeCC------CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCC---cEEEEEEecCCCeeeeecee
Q 001279 89 GFLISITND------NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---LMSVIKYDADEGKLFQLPYN 159 (1108)
Q Consensus 89 ~~L~S~s~d------~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg---~V~vw~~d~~~~~l~~~~~~ 159 (1108)
.+++.++.+ ++|++||+..+.......+...|.+++|+|++++|++++.++ .|++|+++. ++...
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t--g~~~~---- 217 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQ---- 217 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEE----
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC--CcEEE----
Confidence 677777764 799999998776666667888999999999999999998775 888888764 33332
Q ss_pred ecccccccccCCCCCCCCCeEEEecccCCCCCEEE-EEECCC--eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCC
Q 001279 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL-IAYENA--LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1108)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll-~~~~dg--~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1108)
+..+. ..+.+++|+| +|++|+ +++.++ .|.+||+.+++...+..|
T Consensus 218 l~~~~------------~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~------------------ 265 (415)
T 2hqs_A 218 VASFP------------RHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG------------------ 265 (415)
T ss_dssp EECCS------------SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEECCCC------------------
T ss_pred eecCC------------CcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCEEeCcCC------------------
Confidence 33333 6799999999 788777 555555 599999999887655554
Q ss_pred CcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc-cC--cEEEEecCC
Q 001279 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DG--DILLWNTST 281 (1108)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~-DG--~I~lWd~~~ 281 (1108)
...+.+++|. |||+.|++++. +| .|.+||+.+
T Consensus 266 ------------~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 266 ------------RSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp ------------SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTS
T ss_pred ------------CCcccceEEC-CCCCEEEEEECCCCCcEEEEEECCC
Confidence 5678899985 99999998886 45 566666643
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.83 E-value=1.1e-18 Score=204.06 Aligned_cols=299 Identities=9% Similarity=0.029 Sum_probs=209.7
Q ss_pred CCEEEEEEeeCCC-EEEEEe----CCC----cEEEEEc--CCCeeeee--e-cCCCCeeEEEEec--------------C
Q 001279 77 LPYKNLEFLQNQG-FLISIT----NDN----EIQVWSL--ESRSLACC--L-KWESNITAFSVIS--------------G 128 (1108)
Q Consensus 77 ~~V~~l~fs~d~~-~L~S~s----~d~----~I~vWd~--~s~~~~~~--~-~~~~~Itsl~~~~--------------~ 128 (1108)
..|....|.+.+. +|++++ .+| +|++||+ .+++.+.. + .+...+..+++.+ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3667777777664 555765 467 8999999 88876633 3 4555566655554 1
Q ss_pred CCEEEEEeCC------CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC--
Q 001279 129 SHFMYIGDEN------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-- 200 (1108)
Q Consensus 129 ~~~l~vg~~d------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-- 200 (1108)
+..++.++.+ +.|++|+++. +... .+..|. ..|.+++|+| +|++|+.++.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~----~l~~~~------------~~v~~~~~Sp--dg~~la~~s~~~~~ 202 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQF----VVHRSP------------QPLMSPAWSP--DGSKLAYVTFESGR 202 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS--CSCE----EEEEES------------SCEEEEEECT--TSSEEEEEECTTSS
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC--CCCE----EEeCCC------------CcceeeEEcC--CCCEEEEEEecCCC
Confidence 4455555443 6889998763 2222 244444 6799999999 788899998875
Q ss_pred -eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE-EEEccCc--EEE
Q 001279 201 -LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA-VGYIDGD--ILL 276 (1108)
Q Consensus 201 -~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~-sg~~DG~--I~l 276 (1108)
.|++||+.+++...+..+ ...+.+++|. |||+.|+ +++.||. |++
T Consensus 203 ~~i~~~d~~tg~~~~l~~~------------------------------~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASF------------------------------PRHNGAPAFS-PDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp CEEEEEETTTCCEEEEECC------------------------------SSCEEEEEEC-TTSSEEEEEECTTSSCEEEE
T ss_pred cEEEEEECCCCcEEEeecC------------------------------CCcccCEEEc-CCCCEEEEEEecCCCceEEE
Confidence 999999999987766655 5678999985 9999888 6666665 888
Q ss_pred EecCCCCCCCCccCCCCCceeeeecccccCCccEEEEEeecccccccCCCceEEEEeCCCCCCcceEEEEeccccccccc
Q 001279 277 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 356 (1108)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~i~~~~~~~~~s~~~~~~~~llv~gg~~~~~~~~ltvl~l~~~~~~~~ 356 (1108)
||+.++.. .++. .. .
T Consensus 252 ~d~~~~~~------------~~l~--------------------------------~~-~-------------------- 266 (415)
T 2hqs_A 252 MDLASGQI------------RQVT--------------------------------DG-R-------------------- 266 (415)
T ss_dssp EETTTCCE------------EECC--------------------------------CC-S--------------------
T ss_pred EECCCCCE------------EeCc--------------------------------CC-C--------------------
Confidence 88764310 0000 00 0
Q ss_pred cceeeeeecCCCCccceEEEecCCCCCCCCCcceEEEEcCCCeEEEEeccceeeeccccCCCCCCCCccCCccccCCCCc
Q 001279 357 LRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPI 436 (1108)
Q Consensus 357 ~~~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1108)
+
T Consensus 267 -----------------------------------------~-------------------------------------- 267 (415)
T 2hqs_A 267 -----------------------------------------S-------------------------------------- 267 (415)
T ss_dssp -----------------------------------------S--------------------------------------
T ss_pred -----------------------------------------C--------------------------------------
Confidence 0
Q ss_pred ceEEEEEeccCCCCchhhhhHHHhhccccCCCCccCcccccccCCcccCCCccccCCCCcEEEEEec-CC--cEEEEeCC
Q 001279 437 MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYH-DG--SVRIWDAT 513 (1108)
Q Consensus 437 it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~llatgs~-DG--tVriWd~~ 513 (1108)
....++++|+++.|++++. +| .|++||+.
T Consensus 268 ------------------------------------------------~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 268 ------------------------------------------------NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp ------------------------------------------------CEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred ------------------------------------------------cccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 0001145677777777665 45 57777988
Q ss_pred CCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC---ceEEEEEecCCCCCccccccccCccceeecccC
Q 001279 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF---GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1108)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d---G~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1108)
++... .+..|...+.+++|+|||++|++++.+ +.|.+|++....
T Consensus 300 ~~~~~------------~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~--------------------- 346 (415)
T 2hqs_A 300 GGAPQ------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--------------------- 346 (415)
T ss_dssp SSCCE------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---------------------
T ss_pred CCCEE------------EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---------------------
Confidence 77643 134455689999999999999988864 588888887641
Q ss_pred CcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCC---eEEEEEccCceEEEEeecCCCCCCceEEEEeeeccc
Q 001279 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG---RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKN 661 (1108)
Q Consensus 591 ~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG---~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~ 661 (1108)
+ ..+..+. .+.+++|+|+|++|++++.++ .|++||+.+.... .+.+|.+.|.+++|+|...
T Consensus 347 ----~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~----~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 347 ----V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA----RLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ----E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE----ECCCSSSEEEEEEECCCCC
T ss_pred ----E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEE----EeeCCCCCCcCCccccccc
Confidence 1 2334444 899999999999999988877 8999999877654 5678999999999997644
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=2.1e-18 Score=216.74 Aligned_cols=205 Identities=11% Similarity=0.137 Sum_probs=138.2
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEecCCcce--EEeCCCC-----------------CCEEEEEEeeCCCEEEEEeCCC
Q 001279 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LLISPSQ-----------------LPYKNLEFLQNQGFLISITNDN 98 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~--~~~~~h~-----------------~~V~~l~fs~d~~~L~S~s~d~ 98 (1108)
+..+.|. +..++.++.|| | +||..+.+. ..+..|. .+|.+++|+|| ++++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4456777 66777788888 8 999865544 3333322 57999999999 6666654 69
Q ss_pred cEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCC---CeeeeeceeecccccccccCC--CC
Q 001279 99 EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE---GKLFQLPYNISADALSEKAGF--PL 173 (1108)
Q Consensus 99 ~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~---~~l~~~~~~i~~~~~~~~~~~--~~ 173 (1108)
.|.+||+.+++......+...+.+++|+|++++|+.+ .++.|++|+++... +...+. ..........+. ..
T Consensus 102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~---~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV---TIDGTETLVYGQAVHQ 177 (706)
T ss_dssp EEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES---CSCCBTTEEESSCCGG
T ss_pred EEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe---ccCCCCCeEcccchhh
Confidence 9999999999887777777889999999999999985 67999999987510 222221 111110000000 00
Q ss_pred CCCCCeEEEecccCCCCCEEEEEE---------------------------------CCCeEEEEEccCCeEEEEeCCCc
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAY---------------------------------ENALVILWDVSEAQIIFVGGGKD 220 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~---------------------------------~dg~V~lWdl~~~~~~~~~~~~~ 220 (1108)
.....+.++.|+| +|++|++++ .+..|.+||+.+++.......
T Consensus 178 ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~-- 253 (706)
T 2z3z_A 178 REFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG-- 253 (706)
T ss_dssp GCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC--
T ss_pred hhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC--
Confidence 0113368899998 788888887 446899999999876543210
Q ss_pred ccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC-----cEEEEecCCC
Q 001279 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG-----DILLWNTSTT 282 (1108)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG-----~I~lWd~~~~ 282 (1108)
......+.+++|. |||+.|++++.++ .|.+||..++
T Consensus 254 -------------------------~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 254 -------------------------EPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp -------------------------SCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred -------------------------CCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 0014568899985 9999999988775 7888887643
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.81 E-value=3.8e-18 Score=215.62 Aligned_cols=169 Identities=10% Similarity=0.123 Sum_probs=114.4
Q ss_pred CCCEEEEEEeeCCCEEEEEeC-CC-----cEEEEEcCCCeeeeeecCC-------------------------CCeeEEE
Q 001279 76 QLPYKNLEFLQNQGFLISITN-DN-----EIQVWSLESRSLACCLKWE-------------------------SNITAFS 124 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~-d~-----~I~vWd~~s~~~~~~~~~~-------------------------~~Itsl~ 124 (1108)
...|..++|+|||.+|++++. |+ .|.+||+.+++....+... ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 8999999999776555321 2378999
Q ss_pred EecCCCEEEEEeCCCcEEEEEEecCCC-eeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEE
Q 001279 125 VISGSHFMYIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1108)
Q Consensus 125 ~~~~~~~l~vg~~dg~V~vw~~d~~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~ 203 (1108)
|+|++++|++++. +.|++|+++.... .+.+ +..+. ..+.+++|+| +|++|+.++ ++.|.
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~----l~~~~------------~~~~~~~~SP--DG~~la~~~-~~~i~ 175 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ----LTHGE------------GFATDAKLSP--KGGFVSFIR-GRNLW 175 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCB----CCCSS------------SCEEEEEECT--TSSEEEEEE-TTEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEE----cccCC------------cccccccCCC--CCCEEEEEe-CCcEE
Confidence 9999999999987 8888888764200 2221 33332 6699999999 788787776 56899
Q ss_pred EEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC-cEEEEe
Q 001279 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG-DILLWN 278 (1108)
Q Consensus 204 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG-~I~lWd 278 (1108)
+||+.+++...+......... .+..+.+. .++...+.+++|. |||++|++++.|+ .+..|.
T Consensus 176 ~~d~~~g~~~~~~~~~~~~~~-----------~g~~~~v~--~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGSTTIG-----------NGIAEFVA--DEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp EEETTTTEEEECCCCCCSSEE-----------ESCCCHHH--HHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEE
T ss_pred EEecCCCCEEEeccCCcccee-----------ccccceee--eeccccccceEEC-CCCCEEEEEEEcCCCCceEe
Confidence 999999877654321000000 00000000 0002235778885 9999999987764 344443
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=1.6e-16 Score=179.85 Aligned_cols=145 Identities=14% Similarity=0.196 Sum_probs=105.3
Q ss_pred EEEEE-eCCCcEEEEEcC-CC--eeeeeecCCCCeeEEEEecCCCEEEEEeCC-CcEEEEEEecCCCeeeeeceeecccc
Q 001279 90 FLISI-TNDNEIQVWSLE-SR--SLACCLKWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQLPYNISADA 164 (1108)
Q Consensus 90 ~L~S~-s~d~~I~vWd~~-s~--~~~~~~~~~~~Itsl~~~~~~~~l~vg~~d-g~V~vw~~d~~~~~l~~~~~~i~~~~ 164 (1108)
+|+.+ +.++.|.+||+. ++ +.+....+...+.+++|+|++++|++++.+ +.|++|+++...+.+... ..++.+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~- 83 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-AESALP- 83 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEECS-
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-cccccC-
Confidence 44444 679999999995 33 445556777889999999999999998886 999999998554554421 112211
Q ss_pred cccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-CCeEEEEEccCC---eEEEEeCCCcccccccccCCCCCCCCCccc
Q 001279 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEA---QIIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1108)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~lWdl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1108)
..+.+++|+| ++.+|+++.. ++.|.+||+..+ +.......
T Consensus 84 ------------~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------------- 127 (343)
T 1ri6_A 84 ------------GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---------------------- 127 (343)
T ss_dssp ------------SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC----------------------
T ss_pred ------------CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCccccccccccC----------------------
Confidence 3578999988 6777776665 889999999533 33333221
Q ss_pred CcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcEEEEecCC
Q 001279 241 GISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTST 281 (1108)
Q Consensus 241 ~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I~lWd~~~ 281 (1108)
...+.+++|. |+|++|++++ .++.|.+||+.+
T Consensus 128 --------~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 128 --------LDGCHSANIS-PDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp --------CTTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECT
T ss_pred --------CCCceEEEEC-CCCCEEEEecCCCCEEEEEEecC
Confidence 3347778875 9999888888 899999999864
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.78 E-value=8.7e-18 Score=211.66 Aligned_cols=215 Identities=10% Similarity=0.022 Sum_probs=141.6
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCC---CEEEEEEeeCCCEEEEEeCC---------CcE
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQL---PYKNLEFLQNQGFLISITND---------NEI 100 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~---~V~~l~fs~d~~~L~S~s~d---------~~I 100 (1108)
....+.+++|+|||+++++ +.||.|++|+..+.+. .+...|.. .|..++|||||.+|++++.+ +.|
T Consensus 15 ~~~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 15 FKIHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp TCCCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred CcccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 3445778999999998877 6899999999965544 34444554 49999999999999999874 778
Q ss_pred EEEEcCCCeeeeee---cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc-ccCCC----
Q 001279 101 QVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE-KAGFP---- 172 (1108)
Q Consensus 101 ~vWd~~s~~~~~~~---~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~-~~~~~---- 172 (1108)
.+||+.+++..... .+...+.+++|+|++++|+.++. +.|++|+.+. +...+. ...+.... ..+.+
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~--g~~~~~---~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG--KQAIRV---VSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS--SCCEEE---ECCCBTTTEEEEECCHHH
T ss_pred EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC--CceEEE---ecCCCCCceECcccceeE
Confidence 89999998763222 23345889999999999998886 6788887664 333321 11111000 00000
Q ss_pred -CCCCCCeEEEecccCCCCCEEEEEECCC----------------------------------eEEEEEccCCeE-EEEe
Q 001279 173 -LLSHQPVVGVLPHPNSSGNRVLIAYENA----------------------------------LVILWDVSEAQI-IFVG 216 (1108)
Q Consensus 173 -~~~~~~V~~v~f~P~~~~~~ll~~~~dg----------------------------------~V~lWdl~~~~~-~~~~ 216 (1108)
..-...+.++.|+| +|++|+.++.++ .|.+||+.+++. ..+.
T Consensus 168 ~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 168 EEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred EEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 00002348899999 788888887553 677777777653 2222
Q ss_pred CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc----CcEEEEecCCC
Q 001279 217 GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID----GDILLWNTSTT 282 (1108)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D----G~I~lWd~~~~ 282 (1108)
.+.... .....+.+++|. |||++|++.... +.|.+||+.++
T Consensus 246 ~~~~~~------------------------~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g 290 (723)
T 1xfd_A 246 PPDDPR------------------------MREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTG 290 (723)
T ss_dssp CCCCGG------------------------GSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred CCccCC------------------------CccceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence 110000 014568889985 999988776543 46788887543
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.78 E-value=1.7e-16 Score=179.64 Aligned_cols=188 Identities=10% Similarity=0.138 Sum_probs=134.4
Q ss_pred EEEEEECCCcEEEEecCC---cceEEeCCCCCCEEEEEEeeCCCEEEEEeCC-CcEEEEEcC--CCe--eeeeecCCCCe
Q 001279 49 LLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQNQGFLISITND-NEIQVWSLE--SRS--LACCLKWESNI 120 (1108)
Q Consensus 49 ~LA~Gs~dG~I~iw~~~~---~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-~~I~vWd~~--s~~--~~~~~~~~~~I 120 (1108)
++++++.|+.|++|+++. .+.+....|...+.+++|+|++.+|++++.+ +.|.+|++. ++. .+..+.....+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 444447799999999852 2334445677889999999999999999886 899999998 554 34444445588
Q ss_pred eEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE-C
Q 001279 121 TAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-E 198 (1108)
Q Consensus 121 tsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~ 198 (1108)
.+++|+|+++++++++. ++.|++|+++ ++........+..+ ..+.+++|+| ++.+++++. .
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~-------------~~~~~~~~s~--dg~~l~~~~~~ 149 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLE--DGLPVGVVDVVEGL-------------DGCHSANISP--DNRTLWVPALK 149 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEE--TTEEEEEEEEECCC-------------TTBCCCEECT--TSSEEEEEEGG
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECC--CCccccccccccCC-------------CCceEEEECC--CCCEEEEecCC
Confidence 99999999998887765 8889999996 22222111122221 3478899988 677788777 8
Q ss_pred CCeEEEEEccC-CeEEEEe--CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcE
Q 001279 199 NALVILWDVSE-AQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDI 274 (1108)
Q Consensus 199 dg~V~lWdl~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I 274 (1108)
++.|.+||+.+ +++.... .. . . .....+.+++|. |+|++|++++ .++.|
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~---~----~-------------------~~~~~~~~~~~~-pdg~~l~~~~~~~~~i 202 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEV---T----T-------------------VEGAGPRHMVFH-PNEQYAYCVNELNSSV 202 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEE---E----C-------------------STTCCEEEEEEC-TTSSEEEEEETTTTEE
T ss_pred CCEEEEEEecCCCceeeeccccc---c----c-------------------CCCCCcceEEEC-CCCCEEEEEeCCCCEE
Confidence 99999999987 6553221 00 0 0 003457788975 9999776655 78999
Q ss_pred EEEecC
Q 001279 275 LLWNTS 280 (1108)
Q Consensus 275 ~lWd~~ 280 (1108)
.+|++.
T Consensus 203 ~~~~~~ 208 (343)
T 1ri6_A 203 DVWELK 208 (343)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 999985
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.77 E-value=1.3e-16 Score=200.45 Aligned_cols=157 Identities=14% Similarity=0.142 Sum_probs=110.9
Q ss_pred cccCCCCcEEEEEecCC-----cEEEEeCCCC-ceeeEeeeccccceeeccCCCCCeEEEEEEe--CCCeEEEEecCceE
Q 001279 489 TKCHSVDRVYLAGYHDG-----SVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCF--INSSLAVGNEFGLV 560 (1108)
Q Consensus 489 ~~~s~~~~llatgs~DG-----tVriWd~~~~-~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~--d~~~Lasg~~dG~V 560 (1108)
++++|+++.|++++.|+ .|++||+.++ ....+.... -......+.+++|+| ||++|++++.+|.+
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~-------~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET-------DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE-------CSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc-------CCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 36789999888887776 8999999988 444222111 011111346789999 99999999999999
Q ss_pred EEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEE-EEEcCCCCEEEEE-eCCC----eEEEEEccC
Q 001279 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRA-LQFTSSGAKLAVG-FECG----RVAVLDMNL 634 (1108)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vts-lafspdg~~LavG-s~dG----~V~vwd~~~ 634 (1108)
+||.++.... ....+..+...|.+ ++|+|+++.|+++ +.++ .|+.||+.+
T Consensus 336 ~l~~~~~~~~------------------------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 336 HLYLYDTTGR------------------------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp EEEEEETTSC------------------------EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred EEEEEECCCC------------------------EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 9999873211 23455667778887 8999999877655 4444 788888877
Q ss_pred ceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCC----ccEEEEeCCCcc
Q 001279 635 LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD----AKISIVGGSSEN 703 (1108)
Q Consensus 635 ~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~D----g~v~v~d~~~g~ 703 (1108)
+... .+. |...+.++.|+ |++.+|+....+ +.|++||..+|+
T Consensus 392 ~~~~----~l~-~~~~~~~~~~s----------------------pdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 392 GKTK----DLT-PESGMHRTQLS----------------------PDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCCE----ESC-CSSSEEEEEEC----------------------TTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCce----ecc-CCCceEEEEEC----------------------CCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 7643 222 67779999999 556666655443 569999988765
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.76 E-value=1.1e-16 Score=176.46 Aligned_cols=176 Identities=10% Similarity=0.130 Sum_probs=133.5
Q ss_pred EECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC-Ceeeeeec-C-CCCeeEEEEecCC
Q 001279 53 ATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-RSLACCLK-W-ESNITAFSVISGS 129 (1108)
Q Consensus 53 Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s-~~~~~~~~-~-~~~Itsl~~~~~~ 129 (1108)
++.|+.|++|+..+.+......|...|.+++|+|++.+|++++ ++.|.+||+.+ ++...... + ...|.+++|+|++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 4578999999998887777777899999999999999999887 88999999999 77665553 3 3678999999999
Q ss_pred CEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEE-EEECCCeEEEEE
Q 001279 130 HFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL-IAYENALVILWD 206 (1108)
Q Consensus 130 ~~l~vg~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll-~~~~dg~V~lWd 206 (1108)
++++++. .++.+.||.++...+.... +..+ ..+.++.|+| ++.+|+ ++..++.+.||+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~-------------~~~~~~~~sp--dg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRL----MTKN-------------LPSYWHGWSP--DGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEE----CCSS-------------SSEEEEEECT--TSSEEEEEEEETTEEEEEE
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEE----eecC-------------CCccceEECC--CCCEEEEEECCCCceEEEE
Confidence 9999998 4567889998865554332 2221 3488899988 677666 788899999998
Q ss_pred cc--CCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcEEEEec
Q 001279 207 VS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNT 279 (1108)
Q Consensus 207 l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I~lWd~ 279 (1108)
++ +++...+..+ ...+.+++|. |+|+.|+.++ .++.+.+|++
T Consensus 158 ~~~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 158 MDIDSGVETRLTHG------------------------------EGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp EETTTCCEEECCCS------------------------------SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEE
T ss_pred EECCCCcceEcccC------------------------------CCccccceEC-CCCCEEEEEecCCCCccEEEE
Confidence 64 3444333322 4567788875 8888777665 3676777765
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=5.6e-16 Score=174.77 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=107.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeecCCC---CeeEEEEecCCCEEEEE-eCCCcEEEEEEecCCCeeeeeceeecccc
Q 001279 89 GFLISITNDNEIQVWSLESRSLACCLKWES---NITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADA 164 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~---~Itsl~~~~~~~~l~vg-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~ 164 (1108)
.+|++++.++.|.+||+.+++.+..+.... .+..++|+|++++++++ ..++.|++|+... ++.... +.+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~-~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT--GETLGR-IDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT--CCEEEE-EECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC--CCeEee-EEcCCcc
Confidence 478999999999999999999988886665 68999999999877655 4578888887653 444421 2221100
Q ss_pred cccccCCCCCCCCCeEEEecccCCCCCEEEEEE------------CCCeEEEEEccCCeEEEEeCCCcccccccccCCCC
Q 001279 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY------------ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1108)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~------------~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1108)
.+...+.+++|+| ++++|+++. .++.|.+||+.+++.......
T Consensus 79 ---------~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------- 133 (337)
T 1pby_B 79 ---------ERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------- 133 (337)
T ss_dssp ---------EEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--------------
T ss_pred ---------cccccccceEECC--CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--------------
Confidence 0002467889988 788788886 679999999999887654422
Q ss_pred CCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...+.+++|. |+|++|+++ ++.|.+||..++
T Consensus 134 ----------------~~~~~~~~~s-~dg~~l~~~--~~~i~~~d~~~~ 164 (337)
T 1pby_B 134 ----------------PRQITMLAWA-RDGSKLYGL--GRDLHVMDPEAG 164 (337)
T ss_dssp ----------------CSSCCCEEEC-TTSSCEEEE--SSSEEEEETTTT
T ss_pred ----------------CCCcceeEEC-CCCCEEEEe--CCeEEEEECCCC
Confidence 3346677864 999988887 789999999765
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.73 E-value=1.8e-15 Score=170.65 Aligned_cols=149 Identities=8% Similarity=0.054 Sum_probs=103.2
Q ss_pred EEEeeCCCE-EEEEeCCCcEEEEEcCCCeeeeeecC-CCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCee-eeec
Q 001279 82 LEFLQNQGF-LISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKL-FQLP 157 (1108)
Q Consensus 82 l~fs~d~~~-L~S~s~d~~I~vWd~~s~~~~~~~~~-~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l-~~~~ 157 (1108)
..|.+++.+ +++.+.++.|.+||..+++....... ...+ +++|+|+++++++++. ++.|++|+.+. +++ ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~-- 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL--EPPKVV-- 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS--SSCEEE--
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC--CceeEE--
Confidence 456666555 56667789999999999988777654 3456 9999999998877776 78887777654 343 21
Q ss_pred eeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC---eEEEEEccCCeEEEEeCCCcccccccccCCCCCC
Q 001279 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 234 (1108)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg---~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1108)
.+..+. .+..+++|+| ++.+++++..++ .|.+||+.+++.+.....
T Consensus 78 -~~~~~~------------~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------------- 126 (331)
T 3u4y_A 78 -AIQEGQ------------SSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI---------------- 126 (331)
T ss_dssp -EEEECS------------SCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----------------
T ss_pred -ecccCC------------CCccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----------------
Confidence 132222 3344489988 788788555553 899999999987655432
Q ss_pred CCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE-EccCc-EEEEecCC
Q 001279 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGD-ILLWNTST 281 (1108)
Q Consensus 235 ~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg-~~DG~-I~lWd~~~ 281 (1108)
...+.+++|. |+|++|+++ ..++. |.+|++..
T Consensus 127 --------------~~~~~~~~~s-pdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 127 --------------PYDAVGIAIS-PNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp --------------CTTEEEEEEC-TTSSCEEEEEETTTTEEEEEEECT
T ss_pred --------------CCCccceEEC-CCCCEEEEEecCCCceEEEEEECC
Confidence 3346788975 999866555 55588 99999863
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.73 E-value=3.2e-15 Score=170.02 Aligned_cols=164 Identities=11% Similarity=0.107 Sum_probs=111.4
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCC-CCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEE-EecCceEEEEEecC
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV-GNEFGLVYIYNLNG 567 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~-~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Las-g~~dG~V~lw~l~~ 567 (1108)
+++|++++++++..++.|++||+. .+.+.....+. . .....+..++|+|||++|++ ...++.|.+|++..
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-------~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-------M-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-------C-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-------c-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 677888888888889999999998 55544222111 1 12235788999999997666 45689999999986
Q ss_pred CCCCccccccccCccceeecccCCcceEEEEEeecC------cCEEEEEEcCCCCEE-EEEeCCCeEEEEEccC-ceEEE
Q 001279 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN------SPVRALQFTSSGAKL-AVGFECGRVAVLDMNL-LSVLF 639 (1108)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~------~~Vtslafspdg~~L-avGs~dG~V~vwd~~~-~~~~~ 639 (1108)
.... +..+..+.... ..+..++|+|||++| +++..++.|.+||+.. +...
T Consensus 219 ~~g~---------------------~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~- 276 (347)
T 3hfq_A 219 QTGA---------------------FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT- 276 (347)
T ss_dssp TTTE---------------------EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE-
T ss_pred CCCc---------------------eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE-
Confidence 3211 01112222222 458999999999977 5566789999999973 2221
Q ss_pred EeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCC-ccEEEE--eCCCccee
Q 001279 640 FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD-AKISIV--GGSSENMI 705 (1108)
Q Consensus 640 ~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~D-g~v~v~--d~~~g~~l 705 (1108)
....+..+...+..++|+ |++.+|+++..+ +.|.+| |.++|++.
T Consensus 277 ~~~~~~~~~~~~~~~~~s----------------------pdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 277 LIQQISTEGDFPRDFDLD----------------------PTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECSSSCCCEEEEC----------------------TTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EeEEEecCCCCcCeEEEC----------------------CCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 112333456667899998 668878887765 899999 66777765
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.71 E-value=5.4e-16 Score=195.25 Aligned_cols=172 Identities=12% Similarity=0.213 Sum_probs=114.1
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCC----CeeEEEEecCCCEEEEEeCC---------CcEEE
Q 001279 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES----NITAFSVISGSHFMYIGDEN---------GLMSV 143 (1108)
Q Consensus 77 ~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~----~Itsl~~~~~~~~l~vg~~d---------g~V~v 143 (1108)
..+..++|+|||.++++ +.|++|++||+.+++....+.... .|.+++|+|++++|++++.+ +.+++
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 35778899999987766 789999999999998776665433 49999999999999999764 67778
Q ss_pred EEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCC-Cccc
Q 001279 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG-KDLQ 222 (1108)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~-~~~~ 222 (1108)
|+++. +...+ +.... .+...+..++|+| +|++|+.++. +.|.+||+.+++...+... ....
T Consensus 96 ~d~~~--~~~~~----l~~~~---------~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 96 SKIPH--GDPQS----LDPPE---------VSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV 157 (723)
T ss_dssp EESSS--CCCEE----CCCTT---------CCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT
T ss_pred EECCC--CceEe----ccCCc---------cccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc
Confidence 88764 33322 22111 0114478899999 7887888776 7999999998876544321 0000
Q ss_pred ccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc-CcEEEEecC
Q 001279 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNTS 280 (1108)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D-G~I~lWd~~ 280 (1108)
.. .+..+.+ .+++....+.+++|. |||+.|++++.| +.+.+|++.
T Consensus 158 ~~-----------~g~~~~v-~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 158 IY-----------NGLSDWL-YEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp EE-----------EEECCHH-HHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEEC
T ss_pred eE-----------Cccccee-EEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEee
Confidence 00 0000000 000002245788985 999999988865 467778764
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=5.8e-16 Score=194.85 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=104.5
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCC-C---CEEEEEEeeCCCEEEEEeC---------CCcEEEEEc
Q 001279 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQ-L---PYKNLEFLQNQGFLISITN---------DNEIQVWSL 105 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~-~---~V~~l~fs~d~~~L~S~s~---------d~~I~vWd~ 105 (1108)
..++|+|++++++.+ .||.|++|+..+.+...+..+. . .|..++|||||.+|++++. ++.|.+||+
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 367999999776655 6999999999776655444433 2 4999999999999999886 689999999
Q ss_pred CCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC-----CCCCCeE
Q 001279 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL-----LSHQPVV 180 (1108)
Q Consensus 106 ~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~-----~~~~~V~ 180 (1108)
.+++.+........+.+++|+|++++|+.+. ++.|++|+++. +...+. ...++......+.+. .-.....
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~--g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG--DPPFQI--TFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT--SCCEEC--CCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCC--CCcEEE--ecCCCcCCeEcccccceeeeecccCcc
Confidence 9998743233346789999999999999885 67898988764 333321 011111000000000 0001125
Q ss_pred EEecccCCCCCEEEEEECC
Q 001279 181 GVLPHPNSSGNRVLIAYEN 199 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~d 199 (1108)
++.|+| +|++|+.++.|
T Consensus 173 ~~~wSP--DG~~la~~~~d 189 (719)
T 1z68_A 173 ALWWSP--NGKFLAYAEFN 189 (719)
T ss_dssp CEEECT--TSSEEEEEEEE
T ss_pred cEEECC--CCCEEEEEEEC
Confidence 899999 79889888765
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=1.1e-14 Score=165.39 Aligned_cols=167 Identities=12% Similarity=0.114 Sum_probs=121.7
Q ss_pred CCCCEEEEEEeeCCCEEEEEeC-------CCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC-CCcEEEEEE
Q 001279 75 SQLPYKNLEFLQNQGFLISITN-------DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKY 146 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~-------d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~ 146 (1108)
....+..++|+|++.+|+.++. ++.|.+||..+++.+..+.....+.+++++++++++++++. ++.|.+|+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456889999999999988874 46799999999999888877777889999999997776655 688877775
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE--CCCeEEEEEccCCeEEEEeC-CCcccc
Q 001279 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY--ENALVILWDVSEAQIIFVGG-GKDLQL 223 (1108)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~--~dg~V~lWdl~~~~~~~~~~-~~~~~~ 223 (1108)
. .+++... ++.+.. ..........+.++.|+| ++.+++++. .++.|.+||+.+++...... +
T Consensus 119 ~--~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~----- 183 (353)
T 3vgz_A 119 K--TGEVKGR---LVLDDR---KRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT----- 183 (353)
T ss_dssp T--TCCEEEE---EESCCC---CCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-----
T ss_pred C--CCeeEEE---EecCCC---ccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCC-----
Confidence 4 3454432 322110 000000012378899988 677777766 47899999999998876553 2
Q ss_pred cccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...+.+++|. |+|++|+++..++.|.+||..++
T Consensus 184 -------------------------~~~~~~~~~s-~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 184 -------------------------GKMSTGLALD-SEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp -------------------------CTTCCCCEEE-TTTTEEEEECTTSEEEEEETTTT
T ss_pred -------------------------CCccceEEEC-CCCCEEEEEcCCCeEEEEECCCC
Confidence 2335667875 99999999999999999998654
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.70 E-value=6.5e-15 Score=167.41 Aligned_cols=206 Identities=12% Similarity=0.099 Sum_probs=152.7
Q ss_pred eCCCCCceEEEEcCCCCEEEEEEC-------CCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEE
Q 001279 32 YGIPATASILAFDHIQRLLAIATL-------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVW 103 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~-------dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vW 103 (1108)
..+...+..++|+|++++|++++. ++.|.+||..+.+..........+..++|++++.+|+.++ .++.|.+|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 344567889999999999999885 4689999998776664444455678999999998666555 47999999
Q ss_pred EcCCCeeeeeecCCC----------CeeEEEEecCCCEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccccCC
Q 001279 104 SLESRSLACCLKWES----------NITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1108)
Q Consensus 104 d~~s~~~~~~~~~~~----------~Itsl~~~~~~~~l~vg~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1108)
|..+++.+..+.... .+.+++++|+++++++++ .++.|++|+.+ .++.... ++.+.
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~--~~~~~~~---~~~~~------- 184 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG--NIKLKTA---IQNTG------- 184 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT--TTEEEEE---ECCCC-------
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC--CCceEEE---ecCCC-------
Confidence 999998877764422 278999999999988887 36777777654 4555432 33222
Q ss_pred CCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCc
Q 001279 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1108)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1108)
..+.+++|+| ++.+++++..++.|.+||+.+++........ . ......
T Consensus 185 -----~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-------------~------------~~~~~~ 232 (353)
T 3vgz_A 185 -----KMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLL-------------D------------DGKEHF 232 (353)
T ss_dssp -----TTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECC-------------C------------SSSCCC
T ss_pred -----CccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-------------C------------CCCCcc
Confidence 3477889988 7888999999999999999999876543210 0 001345
Q ss_pred eeEEEeecCCCCEEEEEEcc-CcEEEEecCCC
Q 001279 252 ISALCWASSSGSILAVGYID-GDILLWNTSTT 282 (1108)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~D-G~I~lWd~~~~ 282 (1108)
+.+++|. |+|+++++++.+ +.|.+||..++
T Consensus 233 ~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 233 FINISLD-TARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp EEEEEEE-TTTTEEEEEESSSSEEEEEETTTC
T ss_pred cceEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 7788975 999987777654 89999998644
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.70 E-value=3.5e-15 Score=168.22 Aligned_cols=194 Identities=13% Similarity=0.143 Sum_probs=131.6
Q ss_pred EEEcCCCC-EEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCee-eeeecC
Q 001279 41 LAFDHIQR-LLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSL-ACCLKW 116 (1108)
Q Consensus 41 la~sp~~~-~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~~-~~~~~~ 116 (1108)
..|++++. ++++++.++.|++||....+.. ....+..++ .++|+|++.+|++++. ++.|.+||+.++++ ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 44666555 4777788899999999766554 333444556 9999999998877776 88999999999987 655554
Q ss_pred CCCeeE-EEEecCCCEEEEEeCCC---cEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCE
Q 001279 117 ESNITA-FSVISGSHFMYIGDENG---LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1108)
Q Consensus 117 ~~~Its-l~~~~~~~~l~vg~~dg---~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1108)
...... ++|+|++++++++..++ .|++|+++. ++.... ++.. ..+.+++|+| ++++
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~~~~~~---~~~~-------------~~~~~~~~sp--dg~~ 141 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--NKFIST---IPIP-------------YDAVGIAISP--NGNG 141 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT--TEEEEE---EECC-------------TTEEEEEECT--TSSC
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCC--CCeEEE---EECC-------------CCccceEECC--CCCE
Confidence 444455 99999999999666653 899988754 455432 3221 3478999998 6765
Q ss_pred EEEE-ECCCe-EEEEEccCCeE-EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 193 VLIA-YENAL-VILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 193 ll~~-~~dg~-V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
++++ ..++. |.+|++..... .... .. .. .....+.+++|. |+|+++++++
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~--~~-----------------------~~~~~~~~~~~s-pdg~~l~v~~ 194 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGVLFDTG-QE--FI-----------------------SGGTRPFNITFT-PDGNFAFVAN 194 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEE-EE--EE-----------------------CSSSSEEEEEEC-TTSSEEEEEE
T ss_pred EEEEecCCCceEEEEEECCCCcEeecC-Cc--cc-----------------------cCCCCccceEEC-CCCCEEEEEe
Confidence 5554 55577 99999886432 2111 10 00 003346788875 9999765555
Q ss_pred -ccCcEEEEecCCC
Q 001279 270 -IDGDILLWNTSTT 282 (1108)
Q Consensus 270 -~DG~I~lWd~~~~ 282 (1108)
.++.|.+||+.++
T Consensus 195 ~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 195 LIGNSIGILETQNP 208 (331)
T ss_dssp TTTTEEEEEECSST
T ss_pred CCCCeEEEEECCCC
Confidence 6889999998654
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.70 E-value=1e-15 Score=187.47 Aligned_cols=154 Identities=9% Similarity=0.037 Sum_probs=111.4
Q ss_pred CCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCeeeeeecCC-CCeeEEEEecCCCEEEEEeC---CCcEEEEEEec--
Q 001279 76 QLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDE---NGLMSVIKYDA-- 148 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~~~~~~~~~-~~Itsl~~~~~~~~l~vg~~---dg~V~vw~~d~-- 148 (1108)
..+|.+++|+|||.+|++++. |++++||++.+++......+. ..+.+++|+|+ +++++++. +...++|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 458999999999999999987 999999999888777666666 58999999999 78887775 45678888876
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCccccccccc
Q 001279 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVV 228 (1108)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~ 228 (1108)
..... + +... ..+...+|+|..++. +++...++.+.+||+.+++...+..+
T Consensus 100 ~g~~~-~----l~~~-------------~~~~~~~~s~dg~~~-~~~s~~~~~~~l~d~~~g~~~~l~~~---------- 150 (582)
T 3o4h_A 100 PGEEQ-R----LEAV-------------KPMRILSGVDTGEAV-VFTGATEDRVALYALDGGGLRELARL---------- 150 (582)
T ss_dssp TTCCE-E----CTTS-------------CSBEEEEEEECSSCE-EEEEECSSCEEEEEEETTEEEEEEEE----------
T ss_pred CCccc-c----ccCC-------------CCceeeeeCCCCCeE-EEEecCCCCceEEEccCCcEEEeecC----------
Confidence 33222 1 2211 224455777743343 44444555556999999987665433
Q ss_pred CCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc----CcEEEEecCCC
Q 001279 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID----GDILLWNTSTT 282 (1108)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D----G~I~lWd~~~~ 282 (1108)
.. .+++|. |||++|++++.+ +.|++||+.++
T Consensus 151 --------------------~~--~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~g 185 (582)
T 3o4h_A 151 --------------------PG--FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSSG 185 (582)
T ss_dssp --------------------SS--CEEEEE-EETTEEEEEEEEETTEEEEEEEETTTC
T ss_pred --------------------CC--ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCCC
Confidence 22 667764 999999988887 77889987654
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.69 E-value=3.6e-15 Score=164.18 Aligned_cols=202 Identities=9% Similarity=0.046 Sum_probs=151.3
Q ss_pred eeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCC-cceEEeC-CC-CCCEEEEEEeeCCCEEEEEeC--CCcEEEEE
Q 001279 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLIS-PS-QLPYKNLEFLQNQGFLISITN--DNEIQVWS 104 (1108)
Q Consensus 30 ~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~-~~~~~~~-~h-~~~V~~l~fs~d~~~L~S~s~--d~~I~vWd 104 (1108)
...+++..+.+++|+|++++||+++ ++.|++|+..+ .+..... .| ...|.+++|+|++.+|++++. ++.+.||.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 3456788999999999999999987 78999999977 5554333 33 468999999999999999993 34555555
Q ss_pred --cCCCeeeeeecCCCCeeEEEEecCCCEEE-EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001279 105 --LESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1108)
Q Consensus 105 --~~s~~~~~~~~~~~~Itsl~~~~~~~~l~-vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1108)
..++.. ..+.....+.+++|+|++++++ ++..++.++||+++...+.... +..+. ..+.+
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~------------~~~~~ 177 (297)
T 2ojh_A 115 LPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR----LTHGE------------GRNDG 177 (297)
T ss_dssp EETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE----CCCSS------------SCEEE
T ss_pred EECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE----cccCC------------Ccccc
Confidence 455543 3344444599999999999887 7788999999999876555432 33332 67999
Q ss_pred EecccCCCCCEEEEEE-CCCeEEEEEcc--CCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEee
Q 001279 182 VLPHPNSSGNRVLIAY-ENALVILWDVS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1108)
Q Consensus 182 v~f~P~~~~~~ll~~~-~dg~V~lWdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1108)
+.|+| ++..|++++ .++.+.||++. .+....+..+ ...+.+++|.
T Consensus 178 ~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~s 225 (297)
T 2ojh_A 178 PDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS------------------------------AYGDWFPHPS 225 (297)
T ss_dssp EEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCC------------------------------SEEEEEEEEC
T ss_pred ceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecC------------------------------CcccCCeEEC
Confidence 99988 677777666 58889999876 3344333333 4568889985
Q ss_pred cCCCCEEEEEEcc-----------CcEEEEecCCC
Q 001279 259 SSSGSILAVGYID-----------GDILLWNTSTT 282 (1108)
Q Consensus 259 spdg~~l~sg~~D-----------G~I~lWd~~~~ 282 (1108)
|+|++|++++.+ +.|.+||+.++
T Consensus 226 -~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 226 -PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp -TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred -CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 999999988876 56999998765
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.66 E-value=1.4e-13 Score=157.32 Aligned_cols=138 Identities=10% Similarity=0.025 Sum_probs=92.9
Q ss_pred ccCCCCcEEEEEe-cCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC--ceEEEEEec
Q 001279 490 KCHSVDRVYLAGY-HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF--GLVYIYNLN 566 (1108)
Q Consensus 490 ~~s~~~~llatgs-~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d--G~V~lw~l~ 566 (1108)
+++|+++++++++ .+++|++||+.++.+..+..+. ....+...+.+++|+|||++|++++.+ +.|.+|++.
T Consensus 217 ~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 217 IFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA------ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE------SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe------cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 5677877665554 7899999999877655333322 122344567899999999998776654 899999997
Q ss_pred CCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEe-CCCeEEEE--EccCceEEEEeec
Q 001279 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF-ECGRVAVL--DMNLLSVLFFTDD 643 (1108)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs-~dG~V~vw--d~~~~~~~~~~~~ 643 (1108)
..... +..+..+.. ...+++++|+|+|++|++++ .++.|.+| |..++++.....
T Consensus 291 ~~~g~---------------------~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~- 347 (361)
T 3scy_A 291 ETNGT---------------------LTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK- 347 (361)
T ss_dssp TTTCC---------------------EEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC-
T ss_pred CCCCc---------------------EEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce-
Confidence 43111 112222333 45788999999999888887 67999995 555676652211
Q ss_pred CCCCCCceEEEEee
Q 001279 644 ISGSSSPIISMTWT 657 (1108)
Q Consensus 644 ~~~h~~~V~~l~fs 657 (1108)
..+...+.++.|.
T Consensus 348 -~~~~~~p~~v~~~ 360 (361)
T 3scy_A 348 -DIKVDKPVCLKFV 360 (361)
T ss_dssp -CEECSSEEEEEEE
T ss_pred -eeeCCCCeEEEEc
Confidence 1244568888886
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.66 E-value=5.3e-14 Score=159.89 Aligned_cols=145 Identities=14% Similarity=0.179 Sum_probs=93.4
Q ss_pred CCcEEEEEcC--CCeee--eeecCCCCeeEEEEecCCCEEEEEeC---CCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001279 97 DNEIQVWSLE--SRSLA--CCLKWESNITAFSVISGSHFMYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1108)
Q Consensus 97 d~~I~vWd~~--s~~~~--~~~~~~~~Itsl~~~~~~~~l~vg~~---dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1108)
++.|.+|+++ ++++. ....+...+..++|+|+++ +++++. ++.|++|+++. +.+... ..+..+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~--g~~~~~-~~~~~~~----- 85 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG--QTAHKL-NTVVAPG----- 85 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET--TEEEEE-EEEEEES-----
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecC--CcEEEe-eeeecCC-----
Confidence 4567777664 45543 3345567788999999999 666654 68899999864 343321 1122222
Q ss_pred CCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEcc-CCeEEEE--eCCCcccccccccCCCCCCCCCcccCcCCC
Q 001279 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVS-EAQIIFV--GGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1108)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1108)
..+..++|+| ++++|+++. .++.|.+||+. .+..... ..+. ...+. .
T Consensus 86 -------~~p~~~a~sp--dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~------------~~~p~--------~ 136 (347)
T 3hfq_A 86 -------TPPAYVAVDE--ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS------------GHGPR--------P 136 (347)
T ss_dssp -------CCCSEEEEET--TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC------------CCCSS--------T
T ss_pred -------CCCEEEEECC--CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC------------CCCCC--------c
Confidence 5688999988 788788877 78999999996 3333222 1110 00000 0
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
......+.+++|. |+|+.+++...++.|.+|++.
T Consensus 137 ~~~~~~~~~~~~s-pdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 137 EQDGSHIHYTDLT-PDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp TCSSCCEEEEEEC-TTSCEEEEETTTTEEEEEEEC
T ss_pred cccCCCceEEEEC-CCCcEEEEeCCCCEEEEEEEC
Confidence 0114468889975 999966666678899999986
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.66 E-value=1.3e-14 Score=164.61 Aligned_cols=157 Identities=9% Similarity=0.006 Sum_probs=113.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCC--CEEEEEEeeCCCEEEEE-eCCCcEEEEEcCCCeeeeeecC
Q 001279 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL--PYKNLEFLQNQGFLISI-TNDNEIQVWSLESRSLACCLKW 116 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~--~V~~l~fs~d~~~L~S~-s~d~~I~vWd~~s~~~~~~~~~ 116 (1108)
.+++++++.++++++.++.|++||..+.+......... .+..++|+|++.+++.+ ..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 35688899999999999999999997766553322223 67899999999876544 4688999999999988776653
Q ss_pred CC-------CeeEEEEecCCCEEEEEeCC------------CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001279 117 ES-------NITAFSVISGSHFMYIGDEN------------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1108)
Q Consensus 117 ~~-------~Itsl~~~~~~~~l~vg~~d------------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1108)
.. .+.+++|+|+++++++++.+ +.|++|++.. ++.......+.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~-------------~~ 148 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--GLEAKPVRTFPM-------------PR 148 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--GGGBCCSEEEEC-------------CS
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC--ccccceeeeccC-------------CC
Confidence 32 37899999999999999865 8888888764 121111000111 13
Q ss_pred CeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
.+.+++|+| +++ +++++. .|.+||+.+++.....
T Consensus 149 ~~~~~~~s~--dg~-l~~~~~--~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 149 QVYLMRAAD--DGS-LYVAGP--DIYKMDVKTGKYTVAL 182 (349)
T ss_dssp SCCCEEECT--TSC-EEEESS--SEEEECTTTCCEEEEE
T ss_pred cccceeECC--CCc-EEEccC--cEEEEeCCCCceeccc
Confidence 478889988 677 666543 4999999998876543
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.66 E-value=1.2e-14 Score=178.08 Aligned_cols=193 Identities=10% Similarity=0.063 Sum_probs=140.4
Q ss_pred CCCceEEEEcCCCCEEEEEEC-CCcEEEEecCCcceEEeCCCC-CCEEEEEEeeCCCEEEEEeC---CCcEEEEEcCC--
Q 001279 35 PATASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITN---DNEIQVWSLES-- 107 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~-dG~I~iw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~L~S~s~---d~~I~vWd~~s-- 107 (1108)
...|.+++|+|||+.||.++. ||.++||++++.+...+..|. ..|..+.|+|| ..+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 335899999999999999887 999999999877777666666 58999999999 67777764 45566665533
Q ss_pred -CeeeeeecCCCCeeEEEEecCCCE-EEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 108 -RSLACCLKWESNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 108 -~~~~~~~~~~~~Itsl~~~~~~~~-l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
+... .+.....+...+|+|+++. +++...++.+.+|+++. +++.+ +..+. . .+++|+
T Consensus 100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~--g~~~~----l~~~~------------~--~~~~~s 158 (582)
T 3o4h_A 100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDG--GGLRE----LARLP------------G--FGFVSD 158 (582)
T ss_dssp TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEET--TEEEE----EEEES------------S--CEEEEE
T ss_pred CCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccC--CcEEE----eecCC------------C--ceEEEC
Confidence 2222 3333334556688888753 33444445556998875 44443 22211 2 688899
Q ss_pred cCCCCCEEEEEECC----CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCC
Q 001279 186 PNSSGNRVLIAYEN----ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1108)
Q Consensus 186 P~~~~~~ll~~~~d----g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1108)
| +|++|+.++.+ +.|.+||+.+++...+.++ ...+.+++|. ||
T Consensus 159 p--DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~------------------------------~~~~~~~~~S-pD 205 (582)
T 3o4h_A 159 I--RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG------------------------------EGSFSSASIS-PG 205 (582)
T ss_dssp E--ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS------------------------------SCEEEEEEEC-TT
T ss_pred C--CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC------------------------------CCccccceEC-CC
Confidence 8 79988888777 7899999999887766555 5678899985 99
Q ss_pred CCEEEEEEccC--cEEEEecCCC
Q 001279 262 GSILAVGYIDG--DILLWNTSTT 282 (1108)
Q Consensus 262 g~~l~sg~~DG--~I~lWd~~~~ 282 (1108)
|+.|+++..+| .|++||+.++
T Consensus 206 G~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 206 MKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp SCEEEEEECSSCEEEEEECTTTC
T ss_pred CCEEEEccCCCeeEEEEEcCCCC
Confidence 99999888888 8999988654
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.65 E-value=1.1e-15 Score=179.32 Aligned_cols=203 Identities=12% Similarity=0.139 Sum_probs=147.4
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCc-----------ceE-----EeCCCCCCEEEEEEeeCCCEEE----EEe
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----------EGL-----LISPSQLPYKNLEFLQNQGFLI----SIT 95 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-----------~~~-----~~~~h~~~V~~l~fs~d~~~L~----S~s 95 (1108)
..++++++++++.+||+|+.|| |+||+.... ... ....|..+|.+++|+|++.+|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3588999999999999999998 899865211 111 2234667899999999999999 778
Q ss_pred CCCcEEEEEcCCC--------eee---eee-cCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecc
Q 001279 96 NDNEIQVWSLESR--------SLA---CCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISA 162 (1108)
Q Consensus 96 ~d~~I~vWd~~s~--------~~~---~~~-~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~ 162 (1108)
.|+.|+|||+.++ +.+ ..+ .|...|++++|+|+ +.++++|+.||+|++|++... ... +...+
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~--~~~---~~~~~ 190 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET--VKV---CATLP 190 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS--EEE---EEEEC
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC--cce---eeccC
Confidence 8999999998765 222 222 46789999999998 789999999999999999753 222 22333
Q ss_pred cccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCc
Q 001279 163 DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1108)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1108)
|. ..|.+++|+| +|++|++|+.||.|++||++......+..+...
T Consensus 191 ~~------------~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~--------------------- 235 (434)
T 2oit_A 191 ST------------VAVTSVCWSP--KGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFY--------------------- 235 (434)
T ss_dssp GG------------GCEEEEEECT--TSSCEEEEETTSCEEEECTTCCEEEEECCCTTC---------------------
T ss_pred CC------------CceeEEEEcC--CCCEEEEEcCCCcEEEEccCCcccccccCCccc---------------------
Confidence 43 6799999999 688899999999999999983333333222000
Q ss_pred CCCCCCCCceeEEEeecCCCCEEEEEE-ccCc------EEEEecCCC
Q 001279 243 SEHQPEEKEISALCWASSSGSILAVGY-IDGD------ILLWNTSTT 282 (1108)
Q Consensus 243 ~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~------I~lWd~~~~ 282 (1108)
...+...|.+++|. +++.++++.. .||. +++|++...
T Consensus 236 --~~~~~~~v~~v~w~-~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 236 --ESDHPVRVLDVLWI-GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp --CTTSCEEEEEEEEE-ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred --CCCCceeEEEEEEe-cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 00113479999997 7776664433 3432 899998754
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=8.4e-15 Score=184.23 Aligned_cols=163 Identities=15% Similarity=0.270 Sum_probs=106.6
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCC----CeeEEEEecCCCEEEEEeC---------CCcEEEEEEe
Q 001279 81 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES----NITAFSVISGSHFMYIGDE---------NGLMSVIKYD 147 (1108)
Q Consensus 81 ~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~----~Itsl~~~~~~~~l~vg~~---------dg~V~vw~~d 147 (1108)
.++|+||+. ++..+.|++|.+||+.+++....+.+.. .|.+++|+|++++|++++. ++.|++|+++
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 789999985 5555579999999999998776665432 3899999999999998876 6888888865
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe--CCCcccccc
Q 001279 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKD 225 (1108)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~--~~~~~~~~~ 225 (1108)
. ++.... ..+. ..+..++|+| +|++|+.+. ++.|++||+.+++...+. ++......
T Consensus 99 ~--g~~~~~-~~l~---------------~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~- 156 (719)
T 1z68_A 99 N--GEFVRG-NELP---------------RPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFN- 156 (719)
T ss_dssp T--TEECCS-SCCC---------------SSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEE-
T ss_pred C--Cccccc-eecC---------------cccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEc-
Confidence 4 444100 1121 3478899999 788788775 789999999988765432 11000000
Q ss_pred cccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc-CcEEEEec
Q 001279 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNT 279 (1108)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D-G~I~lWd~ 279 (1108)
+..+.+- +.+-.....+++|. |||+.|++++.| +.+.+|.+
T Consensus 157 -----------g~~~~v~-~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 157 -----------GIPDWVY-EEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp -----------SSCCHHH-HHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEE
T ss_pred -----------cccccee-eeecccCcccEEEC-CCCCEEEEEEECCCCCceEEe
Confidence 0000000 00001223578885 999999998866 44555544
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.63 E-value=1e-12 Score=150.17 Aligned_cols=167 Identities=9% Similarity=0.024 Sum_probs=109.3
Q ss_pred ccCCCCc-EEEEEecCCcEEEEeCCCCc-------eeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEe-cCceE
Q 001279 490 KCHSVDR-VYLAGYHDGSVRIWDATYPV-------FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN-EFGLV 560 (1108)
Q Consensus 490 ~~s~~~~-llatgs~DGtVriWd~~~~~-------l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~-~dG~V 560 (1108)
+++|+++ +++++..++.|++|++.... +...... ... ...+...+..++|+|||++|++++ .++.|
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP----EAF-KVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE----EEE-ECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc----cce-ecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 6778887 45556668999999887543 2211000 001 123344678999999999888777 58999
Q ss_pred EEEEecCCCCCccccccccCccceeecccCCcceEEEEE---eecCcCEEEEEEcCCCCEEEEEeC--CCeEEEEEcc--
Q 001279 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF---SLVNSPVRALQFTSSGAKLAVGFE--CGRVAVLDMN-- 633 (1108)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~h~~~Vtslafspdg~~LavGs~--dG~V~vwd~~-- 633 (1108)
.+|++..... ..+..+ ..+.....+++|+|||++|+++.. ++.|.+|++.
T Consensus 236 ~v~~~~~g~~-----------------------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~ 292 (361)
T 3scy_A 236 IAFRYADGML-----------------------DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET 292 (361)
T ss_dssp EEEEEETTEE-----------------------EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT
T ss_pred EEEEecCCce-----------------------EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC
Confidence 9999975311 011111 123345689999999998877665 4899999995
Q ss_pred CceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEc-CCccEEE--EeCCCcceecCC
Q 001279 634 LLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-KDAKISI--VGGSSENMISSS 708 (1108)
Q Consensus 634 ~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s-~Dg~v~v--~d~~~g~~l~~~ 708 (1108)
++.+... ..+.. ...+..++|+ |++.+|+++. .++.|.+ ||.++|++....
T Consensus 293 ~g~~~~~-~~~~~-g~~~~~~~~s----------------------pdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 293 NGTLTKV-GYQLT-GIHPRNFIIT----------------------PNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp TCCEEEE-EEEEC-SSCCCEEEEC----------------------TTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred CCcEEEe-eEecC-CCCCceEEEC----------------------CCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 4443221 11122 4567788898 6688788877 6788988 567788876443
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.59 E-value=5.7e-13 Score=152.71 Aligned_cols=170 Identities=8% Similarity=-0.050 Sum_probs=107.2
Q ss_pred ccCCCCcEEEEEe-cCCcEEEEeCC-CCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEec-CceEEEEEec
Q 001279 490 KCHSVDRVYLAGY-HDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE-FGLVYIYNLN 566 (1108)
Q Consensus 490 ~~s~~~~llatgs-~DGtVriWd~~-~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~-dG~V~lw~l~ 566 (1108)
+++|+++.++++. .+++|++||+. ++.+..+..+ ....|...+..++|+|||++|++++. ++.|.+|++.
T Consensus 151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~-------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV-------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE-------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE-------ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 5678887666554 46899999998 6665422211 12224457899999999999988775 7899999987
Q ss_pred CCCCCccccccccCccceeecccCCcceEEEEE----eecCc------CEEEEE-EcCCCCEEEEEeCCC------eEEE
Q 001279 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVF----SLVNS------PVRALQ-FTSSGAKLAVGFECG------RVAV 629 (1108)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~h~~------~Vtsla-fspdg~~LavGs~dG------~V~v 629 (1108)
........ . .+.+..+ .+|.. .+.+++ |+|||++|+++..+. +|.+
T Consensus 224 ~~~g~~~~--~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v 286 (365)
T 1jof_A 224 PATHMPVY--T---------------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG 286 (365)
T ss_dssp TTTCCEEE--E---------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred CCCCcEEE--c---------------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEE
Confidence 53211000 0 0000000 12222 588999 999999988876433 8999
Q ss_pred EEcc-CceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCC-ccEEEEeCCCc
Q 001279 630 LDMN-LLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD-AKISIVGGSSE 702 (1108)
Q Consensus 630 wd~~-~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~D-g~v~v~d~~~g 702 (1108)
|++. ++.+.........+...+..++|+|... ++.+|+++..+ +.|.+|+.+..
T Consensus 287 ~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~-------------------dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 287 FKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW-------------------SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECTTSCEEEEEEEEECSSCCTTCCCEEECTT-------------------CTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCEEEeeeeeecCCCCcccceecCCCc-------------------CCCEEEEEEcCCCeEEEEEEchh
Confidence 9996 5654421111122444456677773100 47788888875 89999987654
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.58 E-value=8.9e-13 Score=151.11 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=125.4
Q ss_pred EEEEEECC--CcEEEEecC--CcceEEe----CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC-CCeeeeeecC--C
Q 001279 49 LLAIATLD--GRIKVIGGD--GIEGLLI----SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCLKW--E 117 (1108)
Q Consensus 49 ~LA~Gs~d--G~I~iw~~~--~~~~~~~----~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~-s~~~~~~~~~--~ 117 (1108)
+|.+|+.. +.|.+|.++ ..+.... .++...+..++|+|++.+|++++.+ .|.+||+. ++++.....+ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46667754 568887763 2222211 1344578899999999999999888 99999997 7766543322 2
Q ss_pred CCeeEEEEecCCCE--EEEEe-------------CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 118 SNITAFSVISGSHF--MYIGD-------------ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 118 ~~Itsl~~~~~~~~--l~vg~-------------~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
+.+.+++++|++++ +++++ .+|.+.+|+++.. +.+......+... ....+.++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~-----------~~~~~~~~ 150 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQ-----------ENTGIHGM 150 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECC-----------TTCCEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-CcCcceEeeEEeC-----------CCCcceEE
Confidence 44667899999994 55554 6899999999753 3333210011100 11568999
Q ss_pred ecccCCCCCEEEEEEC-CCeEEEEEcc-CCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 183 LPHPNSSGNRVLIAYE-NALVILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 183 ~f~P~~~~~~ll~~~~-dg~V~lWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
+|+| +|++|+++.. ++.|.+||+. +++....... .. . .+...+..++|. |
T Consensus 151 ~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~---~~----~------------------~~g~~p~~~~~s-p 202 (365)
T 1jof_A 151 VFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSV---DA----P------------------DPGDHPRWVAMH-P 202 (365)
T ss_dssp EECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEE---EC----S------------------STTCCEEEEEEC-T
T ss_pred EECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE---ec----C------------------CCCCCCCEeEEC-C
Confidence 9998 7887777664 6799999998 6765322110 00 0 002347788874 9
Q ss_pred CCCEEEEEEc-cCcEEEEecC
Q 001279 261 SGSILAVGYI-DGDILLWNTS 280 (1108)
Q Consensus 261 dg~~l~sg~~-DG~I~lWd~~ 280 (1108)
||++|+++.. ++.|.+|++.
T Consensus 203 dg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 203 TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEEEe
Confidence 9999888775 6889998764
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.58 E-value=3e-13 Score=153.23 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=108.7
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCC--CeeEEEEecCCCEEEEE-eCCCcEEEEEEecCCCeeeeec
Q 001279 81 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES--NITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLP 157 (1108)
Q Consensus 81 ~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~--~Itsl~~~~~~~~l~vg-~~dg~V~vw~~d~~~~~l~~~~ 157 (1108)
.++|++++.++++++.++.|.+||+.+++.+..+.... .+..++|+|++++++++ ..++.|++|+.+. ++....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~~~~- 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTFH- 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEE-
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC--CcEEEE-
Confidence 34677888889999999999999999999888776555 78899999999877655 4678888887653 444422
Q ss_pred eeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC------------CeEEEEEccCCeEE---EEeCCCccc
Q 001279 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN------------ALVILWDVSEAQII---FVGGGKDLQ 222 (1108)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d------------g~V~lWdl~~~~~~---~~~~~~~~~ 222 (1108)
..+.... ......+.+++|+| ++++|+++..+ +.|.+||+.+++.. ....+
T Consensus 81 ~~~~~~~--------~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---- 146 (349)
T 1jmx_B 81 ANLSSVP--------GEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM---- 146 (349)
T ss_dssp EESCCST--------TEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----
T ss_pred EEccccc--------ccccccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC----
Confidence 1111100 00013377889988 78888888865 89999999885422 22111
Q ss_pred ccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...+.+++|. |+|+ ++++ ++.|.+||..++
T Consensus 147 --------------------------~~~~~~~~~s-~dg~-l~~~--~~~i~~~d~~~~ 176 (349)
T 1jmx_B 147 --------------------------PRQVYLMRAA-DDGS-LYVA--GPDIYKMDVKTG 176 (349)
T ss_dssp --------------------------CSSCCCEEEC-TTSC-EEEE--SSSEEEECTTTC
T ss_pred --------------------------CCcccceeEC-CCCc-EEEc--cCcEEEEeCCCC
Confidence 3457788875 9999 6664 455999998654
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.56 E-value=1.8e-12 Score=163.40 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=109.2
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEeCCCCC-----CEEEEEEeeCCCEEEEEeCC---------Cc
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQL-----PYKNLEFLQNQGFLISITND---------NE 99 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~~~h~~-----~V~~l~fs~d~~~L~S~s~d---------~~ 99 (1108)
......++|+|++++++++ ||.|++|+..+.+. .++..|.. ....++|||||.+|+..+.+ +.
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3456689999999999997 99999999965543 45555543 23448999999999999876 56
Q ss_pred EEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC-----C
Q 001279 100 IQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL-----L 174 (1108)
Q Consensus 100 I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~-----~ 174 (1108)
+.+||+.++++.....+...+...+|+|++++||.+. ++.|++|+.+. +...+. +..++......+.+. .
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~--~~~~~l--t~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN--LPSYRI--TWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT--SCCEEC--CSCCBTTTEEESBCCHHHHHH
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC--CceEEE--cCCCCccceecCcccccccch
Confidence 7799999998776667778899999999999998884 67888888654 333321 111111000000000 0
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCe-EEEEE
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENAL-VILWD 206 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~-V~lWd 206 (1108)
-.+...++.|+| +|++|+.+..|.. +.+|+
T Consensus 169 ~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~ 199 (740)
T 4a5s_A 169 VFSAYSALWWSP--NGTFLAYAQFNDTEVPLIE 199 (740)
T ss_dssp TSSSSBCEEECT--TSSEEEEEEEECTTCCEEE
T ss_pred hcCCCcceEECC--CCCEEEEEEEcccCCceEE
Confidence 001224588998 7988887764432 44444
No 162
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.56 E-value=4.3e-13 Score=150.99 Aligned_cols=204 Identities=13% Similarity=0.030 Sum_probs=149.2
Q ss_pred CceEEEEcCCCCEEEE-EECCCcEEEEecCCcceEE--eCCC----CCCEEEEEEeeCCCEEEEEe------------CC
Q 001279 37 TASILAFDHIQRLLAI-ATLDGRIKVIGGDGIEGLL--ISPS----QLPYKNLEFLQNQGFLISIT------------ND 97 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~-Gs~dG~I~iw~~~~~~~~~--~~~h----~~~V~~l~fs~d~~~L~S~s------------~d 97 (1108)
.+..++|+|+++++++ +..++.|++||....+.+. ..++ ...+..++|+|++.+|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 5888999999987655 4557899999997665543 2222 22678899999999998886 57
Q ss_pred CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccc--cc-------cc
Q 001279 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA--LS-------EK 168 (1108)
Q Consensus 98 ~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~--~~-------~~ 168 (1108)
+.|.+||+.+++.+..+.....+.+++|+|++++++++ ++.|++|+... +++... ++.+. .. +.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~--~~~~~~---~~~~~~~~~~~~s~dg~~ 187 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEA--GTLVED---KPIQSWEAETYAQPDVLA 187 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTT--TEEEEE---ECSTTTTTTTBCCCBCCC
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCC--CcEeee---eeccccCCCceeCCCccE
Confidence 99999999999888877767778999999999999888 68898888653 333321 11110 00 00
Q ss_pred cCCC---------------------------------------------CCCCCCeEEEecccCCCCCEEEEEECCCeEE
Q 001279 169 AGFP---------------------------------------------LLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1108)
Q Consensus 169 ~~~~---------------------------------------------~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~ 203 (1108)
.... ......+.+++|+| ++.+++++ ++.|.
T Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~--~~~v~ 263 (337)
T 1pby_B 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP--AKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT--TSSEEEEE--ESEEE
T ss_pred EeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC--CCCEEEEe--CCeEE
Confidence 0000 00113466799988 78877777 79999
Q ss_pred EEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 204 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+||+.+++.+..... ...+.+++|. |+|++|++++.++.|.+||+.++
T Consensus 264 ~~d~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 264 SFDLEKNASIKRVPL------------------------------PHSYYSVNVS-TDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEETTTTEEEEEEEC------------------------------SSCCCEEEEC-TTSCEEEEESBSSEEEEEETTTC
T ss_pred EEECCCCcCcceecC------------------------------CCceeeEEEC-CCCCEEEEEcCCCcEEEEECcCC
Confidence 999999887655432 3456788875 99999999999999999999866
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.55 E-value=2.8e-14 Score=167.39 Aligned_cols=165 Identities=13% Similarity=0.073 Sum_probs=124.0
Q ss_pred eCCCCCceEEEEcCCCCEEE----EEECCCcEEEEecCCc------------ceEEeCCCCCCEEEEEEeeC-CCEEEEE
Q 001279 32 YGIPATASILAFDHIQRLLA----IATLDGRIKVIGGDGI------------EGLLISPSQLPYKNLEFLQN-QGFLISI 94 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA----~Gs~dG~I~iw~~~~~------------~~~~~~~h~~~V~~l~fs~d-~~~L~S~ 94 (1108)
..++..|.+++|+|++++|| +|+.|+.|+|||.... ......+|..+|.+++|+|+ +.+|+++
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 45678899999999999999 6888999999997432 12345568999999999997 7899999
Q ss_pred eCCCcEEEEEcCCCeeee-eecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001279 95 TNDNEIQVWSLESRSLAC-CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 95 s~d~~I~vWd~~s~~~~~-~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1108)
+.|++|++||++++.... ...|...|++++|+|++++|++|+.||.|++|+.. +.... .+..+.. ...
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~---~~~~~---~~~~~~~-----~~~ 237 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT---LQEKK---VIPCPPF-----YES 237 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT---CCEEE---EECCCTT-----CCT
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC---Ccccc---cccCCcc-----cCC
Confidence 999999999999986553 34677899999999999999999999999999875 22221 1222110 000
Q ss_pred CCCCCeEEEecccCCCCCEEEEEE--CCC------eEEEEEccCC
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAY--ENA------LVILWDVSEA 210 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~--~dg------~V~lWdl~~~ 210 (1108)
.+...|.++.|+| ++. +++++ .+| .+++||+...
T Consensus 238 ~~~~~v~~v~w~~--~~~-~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 238 DHPVRVLDVLWIG--TYV-FAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TSCEEEEEEEEEE--TTE-EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCceeEEEEEEec--Cce-EEEEEccCCCccCCCCceEEEEeccC
Confidence 1124699999987 454 44333 333 3889998764
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.51 E-value=2.5e-12 Score=148.29 Aligned_cols=157 Identities=8% Similarity=0.026 Sum_probs=108.7
Q ss_pred CCcceEEeCCCCCCEEE-----EEEeeCCCEEEEEeC-CC--cEEEEEcCCCeeeeeecCC-CCeeEEEEecCCCEEEEE
Q 001279 65 DGIEGLLISPSQLPYKN-----LEFLQNQGFLISITN-DN--EIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIG 135 (1108)
Q Consensus 65 ~~~~~~~~~~h~~~V~~-----l~fs~d~~~L~S~s~-d~--~I~vWd~~s~~~~~~~~~~-~~Itsl~~~~~~~~l~vg 135 (1108)
.+.++..+..|...+.. .+|+|||.+|+.++. ++ .|.+||+.+++........ ..+....|+|++++|+.+
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 44555666667666665 889999999999987 66 3888999999877666444 344467899999999999
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEe--cccCCCCCEEEEEE----------------
Q 001279 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL--PHPNSSGNRVLIAY---------------- 197 (1108)
Q Consensus 136 ~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~--f~P~~~~~~ll~~~---------------- 197 (1108)
..++.|++|+++. ++.... +..+. ..+.... ++| ++.+++...
T Consensus 99 ~~~~~l~~~d~~~--g~~~~~-~~~~~--------------~~~~~~~~~~~~--dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 99 KDGRNLMRVDLAT--LEENVV-YQVPA--------------EWVGYGTWVANS--DCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp ETTTEEEEEETTT--CCEEEE-EECCT--------------TEEEEEEEEECT--TSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred eCCCeEEEEECCC--Ccceee-eechh--------------hcccccceeECC--CCCeeccccccCcccccccccchhh
Confidence 9999888888765 333321 23332 2233333 345 677555321
Q ss_pred ------CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC-CCCEEEEEEc
Q 001279 198 ------ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYI 270 (1108)
Q Consensus 198 ------~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~sg~~ 270 (1108)
.+..|.+||+.+++...+..+ ...+..+.|. | ||+.|+....
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~~l~~~------------------------------~~~~~~~~~s-p~dg~~l~~~~~ 208 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGESTVILQE------------------------------NQWLGHPIYR-PYDDSTVAFCHE 208 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEEEEEEE------------------------------SSCEEEEEEE-TTEEEEEEEEEC
T ss_pred hhhccCCcceEEEEECCCCceEEeecC------------------------------CccccccEEC-CCCCCEEEEEEe
Confidence 346889999999877665544 4567888875 9 9998887765
Q ss_pred c
Q 001279 271 D 271 (1108)
Q Consensus 271 D 271 (1108)
+
T Consensus 209 ~ 209 (388)
T 3pe7_A 209 G 209 (388)
T ss_dssp S
T ss_pred c
Confidence 3
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.49 E-value=2.2e-12 Score=148.72 Aligned_cols=196 Identities=13% Similarity=0.056 Sum_probs=129.9
Q ss_pred EEEcCCCCEEEEEEC-CC--cEEEEecCCcceEEeCC-CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC
Q 001279 41 LAFDHIQRLLAIATL-DG--RIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1108)
Q Consensus 41 la~sp~~~~LA~Gs~-dG--~I~iw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~ 116 (1108)
.+|+|||++||.++. +| .|.+|+.++.+...+.. +...+..+.|+||+.+|+.++.++.|.+||+.+++.......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999999999998 67 48888988776665444 444555788999999999999999999999999987665544
Q ss_pred CC-CeeE--EEEecCCCEEEEEe--------------------CCCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001279 117 ES-NITA--FSVISGSHFMYIGD--------------------ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 117 ~~-~Its--l~~~~~~~~l~vg~--------------------~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1108)
+. .+.. ..+++++.+++... .+....||.++...++... +..+.
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~----l~~~~--------- 187 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV----ILQEN--------- 187 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE----EEEES---------
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE----eecCC---------
Confidence 33 3322 34588888887432 1122344445544455443 22222
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECC------CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCC
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYEN------ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~d------g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1108)
..+..+.|+|. ++++|+.+..+ ..|.++|+.++....+..+.
T Consensus 188 ---~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~---------------------------- 235 (388)
T 3pe7_A 188 ---QWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA---------------------------- 235 (388)
T ss_dssp ---SCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC----------------------------
T ss_pred ---ccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC----------------------------
Confidence 56889999883 46667766653 36777787766554433220
Q ss_pred CCCceeEEEeecCCCCEEEEEEc-cC----cEEEEecCCC
Q 001279 248 EEKEISALCWASSSGSILAVGYI-DG----DILLWNTSTT 282 (1108)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~-DG----~I~lWd~~~~ 282 (1108)
....+...+|. |||+.|+..+. ++ .|.+||+.++
T Consensus 236 ~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 236 EGESCTHEFWV-PDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp TTEEEEEEEEC-TTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCcccccceEC-CCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 01246778875 99997755443 23 3889988754
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.46 E-value=6.6e-12 Score=156.10 Aligned_cols=200 Identities=12% Similarity=0.082 Sum_probs=135.1
Q ss_pred eCCCCCceEEEEcCCCCEEEEE--ECCCcEEEEec-CCcceEEeCCCCCCEE---------EEEEe--eCCCE-EEEEeC
Q 001279 32 YGIPATASILAFDHIQRLLAIA--TLDGRIKVIGG-DGIEGLLISPSQLPYK---------NLEFL--QNQGF-LISITN 96 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~G--s~dG~I~iw~~-~~~~~~~~~~h~~~V~---------~l~fs--~d~~~-L~S~s~ 96 (1108)
.++...+..++++++..+++.+ ..+++..||.. .+.....+..|...+. ...|+ ||+.+ |+.++.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 3567789999999887777777 45789999985 4445555666666666 66676 99988 666554
Q ss_pred -CCcEEEEEcC--C-Ceeeeeec-----CCCCeeEEEEecCCCEEEEEeCC----------CcEEEEEEecCC----Cee
Q 001279 97 -DNEIQVWSLE--S-RSLACCLK-----WESNITAFSVISGSHFMYIGDEN----------GLMSVIKYDADE----GKL 153 (1108)
Q Consensus 97 -d~~I~vWd~~--s-~~~~~~~~-----~~~~Itsl~~~~~~~~l~vg~~d----------g~V~vw~~d~~~----~~l 153 (1108)
+..|.+||+. + +....... +...+.+++|+|++++|+.++.+ ..|++|+++... +..
T Consensus 100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 4567777766 3 44333333 45678999999999999988866 456666654310 333
Q ss_pred eeeceeec-ccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC--------CeEEEEEcc-CC---eEEEEeCCCc
Q 001279 154 FQLPYNIS-ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN--------ALVILWDVS-EA---QIIFVGGGKD 220 (1108)
Q Consensus 154 ~~~~~~i~-~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d--------g~V~lWdl~-~~---~~~~~~~~~~ 220 (1108)
.+ +. .+. ..+..+.|+| +|++|+.++.+ ..|.+||+. ++ +...+..+
T Consensus 180 ~~----l~~~~~------------~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-- 239 (662)
T 3azo_A 180 RE----LSDDAH------------RFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-- 239 (662)
T ss_dssp EE----SSCSCS------------SEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE--
T ss_pred eE----EEecCC------------CcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC--
Confidence 32 22 221 4577889988 79888877755 379999999 56 44433321
Q ss_pred ccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEec
Q 001279 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1108)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1108)
+...+.+++|. |||++++++..+|...+|.+
T Consensus 240 ---------------------------~~~~~~~~~~s-pdg~l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 240 ---------------------------PEEAIAQAEWA-PDGSLIVATDRTGWWNLHRV 270 (662)
T ss_dssp ---------------------------TTBCEEEEEEC-TTSCEEEEECTTSSCEEEEE
T ss_pred ---------------------------CCceEcceEEC-CCCeEEEEECCCCCeEEEEE
Confidence 04568889985 99998888888884444443
No 167
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.46 E-value=4.1e-14 Score=112.27 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=53.6
Q ss_pred CCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhh
Q 001279 1039 RTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1101 (1108)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~ 1101 (1108)
+.++.++++ .+++.+++.+|++||.||||||+.|++||++|+++|++|+++|++|++|||
T Consensus 4 ~~i~~v~~q---v~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 4 GGIEGVKGA---ASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp --CHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356778877 666789999999999999999999999999999999999999999999996
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.45 E-value=8.2e-12 Score=155.24 Aligned_cols=164 Identities=5% Similarity=-0.003 Sum_probs=105.4
Q ss_pred eCCCCCCEEEEEEeeCCCEEEEE--eCCCcEEEEEcC-CCeeeeeecCCCCee---------EEEEe--cCCCE-EEEEe
Q 001279 72 ISPSQLPYKNLEFLQNQGFLISI--TNDNEIQVWSLE-SRSLACCLKWESNIT---------AFSVI--SGSHF-MYIGD 136 (1108)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~--s~d~~I~vWd~~-s~~~~~~~~~~~~It---------sl~~~--~~~~~-l~vg~ 136 (1108)
+..|...|..++|++++.++++. +.++...||... .+.......+...+. ++.++ |++++ |+.+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 34578899999999886666666 457889999954 344433344555555 56565 99988 77665
Q ss_pred CCCcEEEEEEecC--C-CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC----------CeEE
Q 001279 137 ENGLMSVIKYDAD--E-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----------ALVI 203 (1108)
Q Consensus 137 ~dg~V~vw~~d~~--~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d----------g~V~ 203 (1108)
.. ...||.++.. . +...+ +.... ...+...+.+++|+| +|++|+.++.+ ..|.
T Consensus 99 ~~-~~~l~~~~~~~~g~~~~~~----l~~~~-------~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 99 FG-DQRLYAFEPDAPGGAVPRP----LTPVS-------AVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp TT-TCCEEEECTTSTTCCCCEE----CSCCC-------CSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred CC-CCeEEEEcCCCCCCCCCEe----ccCCc-------cCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEE
Confidence 42 3355666654 2 33332 22210 000114588999999 78889888876 5899
Q ss_pred EEEccC------CeEEEEe-CCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC----
Q 001279 204 LWDVSE------AQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---- 272 (1108)
Q Consensus 204 lWdl~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG---- 272 (1108)
+||+.+ ++...+. .+ ...+.+++| +|||++|+.++.++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~------------------------------~~~~~~~~~-SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 165 AVPLDGSAAADRSAVRELSDDA------------------------------HRFVTGPRL-SPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEETTSTTTTCGGGSEESSCSC------------------------------SSEECCCEE-CTTSSEEEEEEECTTCCT
T ss_pred EEECCCCccccCCceeEEEecC------------------------------CCcccCceE-CCCCCEEEEEECCCCCCC
Confidence 999988 6554433 22 345666787 59999999887654
Q ss_pred ----cEEEEecC
Q 001279 273 ----DILLWNTS 280 (1108)
Q Consensus 273 ----~I~lWd~~ 280 (1108)
.|.+||+.
T Consensus 214 ~~~~~i~~~d~~ 225 (662)
T 3azo_A 214 WEGTELKTARVT 225 (662)
T ss_dssp TTCEEEEEEEEC
T ss_pred CCCcEEEEEEEC
Confidence 46666654
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.44 E-value=3.2e-12 Score=147.60 Aligned_cols=161 Identities=8% Similarity=-0.020 Sum_probs=107.7
Q ss_pred ceEEEEcCCCCEEEEEECC---CcEEEEecCCcceEEeCCCCCCEE-EEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001279 38 ASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYK-NLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~d---G~I~iw~~~~~~~~~~~~h~~~V~-~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~ 113 (1108)
+..++|+|+|++||..... ..|++|+..+.+...+..+...+. .+.|+||+.+|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6678999999999888654 368888988777665555544433 488999999999999999999999998876554
Q ss_pred ecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 114 ~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
...... +++++++|+....++...+|.. .+.|+| +++.+
T Consensus 118 ~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~----------------------------------~~~~sp--dg~~~ 156 (396)
T 3c5m_A 118 YTVDEE-----WKGYGTWVANSDCTKLVGIEIL----------------------------------KRDWQP--LTSWE 156 (396)
T ss_dssp EECCTT-----EEEEEEEEECTTSSEEEEEEEE----------------------------------GGGCCC--CCSHH
T ss_pred Eecccc-----cCCCCCEEEeccCCcccccccc----------------------------------ccccCC--CCcce
Confidence 442222 5556666665554443332221 112444 44434
Q ss_pred EEE-----ECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC-CCCEEEE
Q 001279 194 LIA-----YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAV 267 (1108)
Q Consensus 194 l~~-----~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~s 267 (1108)
+.+ ..+..|.+||+.+++...+..+ ...+..+.|. | +|..|+.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~------------------------------~~~~~~~~~s-p~dg~~l~~ 205 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELEVIHQD------------------------------TAWLGHPIYR-PFDDSTVGF 205 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEEEEEEE------------------------------SSCEEEEEEE-TTEEEEEEE
T ss_pred eeeeeccCCCcceEEEEECCCCcEEeeccC------------------------------CcccccceEC-CCCCCEEEE
Confidence 333 3456789999998876655433 4567788875 8 7887776
Q ss_pred EEc
Q 001279 268 GYI 270 (1108)
Q Consensus 268 g~~ 270 (1108)
.+.
T Consensus 206 ~~~ 208 (396)
T 3c5m_A 206 CHE 208 (396)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.43 E-value=4.2e-11 Score=150.77 Aligned_cols=167 Identities=17% Similarity=0.227 Sum_probs=108.3
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC-CC-----CeeEEEEecCCCEEEEEeCC---------CcE
Q 001279 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ES-----NITAFSVISGSHFMYIGDEN---------GLM 141 (1108)
Q Consensus 77 ~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~-~~-----~Itsl~~~~~~~~l~vg~~d---------g~V 141 (1108)
.....++|+||+.+|++. |++|++||+.+++....+.. .. ....++|+|++++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999888875 99999999999987655532 21 23458999999999998876 444
Q ss_pred EEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe--CCC
Q 001279 142 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGK 219 (1108)
Q Consensus 142 ~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~--~~~ 219 (1108)
++|++. .+++.+ +..+. ..+..++|+| +|++|+.+ .++.|.+||+.++....+. ++.
T Consensus 95 ~~~d~~--~~~~~~----l~~~~------------~~~~~~~~SP--dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~ 153 (740)
T 4a5s_A 95 DIYDLN--KRQLIT----EERIP------------NNTQWVTWSP--VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE 153 (740)
T ss_dssp EEEETT--TTEECC----SSCCC------------TTEEEEEECS--STTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred EEEECC--CCcEEE----cccCC------------CcceeeEECC--CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCc
Confidence 566654 355443 33332 5699999999 78878777 5789999999988754432 110
Q ss_pred cccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCc-EEEEecC
Q 001279 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD-ILLWNTS 280 (1108)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~-I~lWd~~ 280 (1108)
..... +..+.+- +++--....++.| ||||+.|+.+..|.+ +.+|++.
T Consensus 154 ~~~~~------------g~~~~v~-~ee~~~~~~~~~w-SpDg~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 154 DIIYN------------GITDWVY-EEEVFSAYSALWW-SPNGTFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp TTEEE------------SBCCHHH-HHHTSSSSBCEEE-CTTSSEEEEEEEECTTCCEEEEE
T ss_pred cceec------------Ccccccc-cchhcCCCcceEE-CCCCCEEEEEEEcccCCceEEEE
Confidence 00000 0000000 0000123345777 599999999876655 8888764
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.43 E-value=5.3e-11 Score=135.93 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=99.3
Q ss_pred CCCEEEEEe------CCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC----------CCcEEEEEEecCC
Q 001279 87 NQGFLISIT------NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDADE 150 (1108)
Q Consensus 87 d~~~L~S~s------~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~----------dg~V~vw~~d~~~ 150 (1108)
++.+++.+. .|+.|.+||..+++++..+...... .++++|++++++++.. ++.|.+|+.. .
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD--K 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT--T
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc--C
Confidence 455666554 3679999999999888776544444 8999999999999873 5678888754 3
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC--CCeEEEEEccCCeEEEE-eCCCcccccccc
Q 001279 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFV-GGGKDLQLKDGV 227 (1108)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~lWdl~~~~~~~~-~~~~~~~~~~~~ 227 (1108)
.+.... ..+.... ......+..++++| +|++|+++.. ++.|.+||+.+++.+.. ...
T Consensus 91 ~~~~~~-i~~~~~~--------~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--------- 150 (361)
T 2oiz_A 91 LTFEKE-ISLPPKR--------VQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--------- 150 (361)
T ss_dssp CCEEEE-EEECTTB--------CCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---------
T ss_pred CcEEEE-EEcCccc--------cccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---------
Confidence 444432 1121100 00013467789988 7888888764 57999999999987655 422
Q ss_pred cCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC-CEEEEEEccCcEEEEecC
Q 001279 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~DG~I~lWd~~ 280 (1108)
.. ...+..+ |++ ..+++.+.||.+.+|+..
T Consensus 151 ---------------------~~-~~~v~~~-p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 151 ---------------------AG-CWSVIPQ-PNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp ---------------------TT-EEEEEEC-TTSSSEEEEEETTSSEEEEEEC
T ss_pred ---------------------CC-cceeEEc-CCCCeeEEEECCCCcEEEEEEC
Confidence 11 1112323 655 678888999999999875
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.41 E-value=3.9e-11 Score=137.05 Aligned_cols=146 Identities=10% Similarity=0.220 Sum_probs=103.3
Q ss_pred CCCEEEEEE------CCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeC----------CCcEEEEEcCCC
Q 001279 46 IQRLLAIAT------LDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN----------DNEIQVWSLESR 108 (1108)
Q Consensus 46 ~~~~LA~Gs------~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~----------d~~I~vWd~~s~ 108 (1108)
+++++.+.. .|+.|++||....+++ .+..+..| .++|+||+++|++++. ++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666654 3689999998665544 34445555 8999999999999873 577999999998
Q ss_pred eeeeeecC-------CCCeeEEEEecCCCEEEEEeC--CCcEEEEEEecCCCeeeeecee-ecccccccccCCCCCCCCC
Q 001279 109 SLACCLKW-------ESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYN-ISADALSEKAGFPLLSHQP 178 (1108)
Q Consensus 109 ~~~~~~~~-------~~~Itsl~~~~~~~~l~vg~~--dg~V~vw~~d~~~~~l~~~~~~-i~~~~~~~~~~~~~~~~~~ 178 (1108)
+.+..+.. ......++++|++++|+++.. +++|.+|+.+. +++. .. ++. ..
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~--~~~~---~~~i~~--------------~~ 152 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK--GDYV---EDVTAA--------------AG 152 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT--TEEE---EEEGGG--------------TT
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC--CcEE---EEEecC--------------CC
Confidence 88776642 245778999999999999975 57888887664 4443 22 221 12
Q ss_pred eEEEecccCCCCCEEEEEECCCeEEEEEccC-CeEE
Q 001279 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQII 213 (1108)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~-~~~~ 213 (1108)
...+.+.|. ...++++.+.||.+.+|++.. ++..
T Consensus 153 ~~~v~~~p~-~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 153 CWSVIPQPN-RPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp EEEEEECTT-SSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred cceeEEcCC-CCeeEEEECCCCcEEEEEECCCCcEe
Confidence 333556664 235688899999999999865 5544
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.36 E-value=2.2e-09 Score=129.19 Aligned_cols=202 Identities=11% Similarity=0.082 Sum_probs=139.0
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC--CCeeeeeecCCCC
Q 001279 42 AFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE--SRSLACCLKWESN 119 (1108)
Q Consensus 42 a~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~--s~~~~~~~~~~~~ 119 (1108)
..+|.+.++++...++.|.+||..+.+++........+..+.|+||+++|++++.++.|.+||+. +++.+..+.....
T Consensus 162 ~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 162 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp CCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred ccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence 35676777888888899999999887777544444567799999999999999999999999996 8888877766667
Q ss_pred eeEEEEe----cCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC-CCCeEEEecccCCCCCEE
Q 001279 120 ITAFSVI----SGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS-HQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 120 Itsl~~~----~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~-~~~V~~v~f~P~~~~~~l 193 (1108)
...++|+ |+++++++++. +++|.|+|. .+.++.+. ++..... ..-...+ ...+..+..+|. ....+
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~--~t~~~~~~---i~~~~~~--~~~~~~~p~~rva~i~~s~~-~~~~v 313 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG--ETLEPKKI---QSTRGMT--YDEQEYHPEPRVAAILASHY-RPEFI 313 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEET--TTCCEEEE---EECCEEC--TTTCCEESCCCEEEEEECSS-SSEEE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEEC--CCCcEEEE---Eeccccc--cccccccCCCceEEEEEcCC-CCEEE
Confidence 7899999 69999998876 488888764 33444432 2211000 0000000 125778888763 23334
Q ss_pred EEEECCCeEEEEEccCCeEEEE--eCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-c
Q 001279 194 LIAYENALVILWDVSEAQIIFV--GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-I 270 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~ 270 (1108)
+....+|.|.++|....+.... ... ......+.|. |+|++++++. .
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i~~------------------------------~~~~~d~~~~-pdgr~~~va~~~ 362 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEISA------------------------------ERFLHDGGLD-GSHRYFITAANA 362 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEEC------------------------------CSSEEEEEEC-TTSCEEEEEEGG
T ss_pred EEecCCCeEEEEecCCCccceeeeeec------------------------------cccccCceEC-CCCCEEEEEeCC
Confidence 4555678999999877543221 111 2345567765 9999887766 5
Q ss_pred cCcEEEEecCCC
Q 001279 271 DGDILLWNTSTT 282 (1108)
Q Consensus 271 DG~I~lWd~~~~ 282 (1108)
++.|.+||..++
T Consensus 363 sn~V~ViD~~t~ 374 (567)
T 1qks_A 363 RNKLVVIDTKEG 374 (567)
T ss_dssp GTEEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 788999998754
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.34 E-value=2.5e-09 Score=128.59 Aligned_cols=113 Identities=8% Similarity=0.110 Sum_probs=85.8
Q ss_pred eCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc
Q 001279 86 QNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL 165 (1108)
Q Consensus 86 ~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~ 165 (1108)
+++.++++...+++|.+||..+++++..+.....+..+.++|+++++++++.++.|.+||+.....++.. +++..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~---~i~~G-- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA---EIKIG-- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE---EEECC--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE---EEecC--
Confidence 4445666677789999999999999988877777889999999999999999999999887422334432 24321
Q ss_pred ccccCCCCCCCCCeEEEecc----cCCCCCEEEEE-ECCCeEEEEEccCCeEEEEe
Q 001279 166 SEKAGFPLLSHQPVVGVLPH----PNSSGNRVLIA-YENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 166 ~~~~~~~~~~~~~V~~v~f~----P~~~~~~ll~~-~~dg~V~lWdl~~~~~~~~~ 216 (1108)
.....++|+ | +|++++++ +.++.|.|+|..+.+.+...
T Consensus 240 -----------~~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 240 -----------SEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp -----------SEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred -----------CCCceeEEccccCC--CCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 236899998 5 67776655 45689999999998776543
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.33 E-value=3.4e-10 Score=128.11 Aligned_cols=110 Identities=9% Similarity=0.066 Sum_probs=78.7
Q ss_pred CEEEEEEeeCCCEEEEEe---------CCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCC---CcEEEEE
Q 001279 78 PYKNLEFLQNQGFLISIT---------NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDEN---GLMSVIK 145 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s---------~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~d---g~V~vw~ 145 (1108)
.+..++| ||.+++... .++.|.+||+.+++.... ..+.+++|+|++++|+..+.+ +...||.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 4677777 778777653 256799999998865433 568899999999998877654 5656777
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC--------------------------
Q 001279 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-------------------------- 199 (1108)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d-------------------------- 199 (1108)
++...++..+. .... . +.++.|+| +++.|+.++.+
T Consensus 90 ~~~~~g~~~~l----~~~~------------~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 90 ADLETLSSKKI----LEAK------------N-IRSLEWNE--DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EETTTTEEEEE----EEES------------E-EEEEEECT--TSSEEEEEEECCCC---------CCCC---------C
T ss_pred EECCCCceEEE----EcCC------------C-ccceeECC--CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 76655655432 2111 4 88999998 78878877642
Q ss_pred -CeEEEEEccCCeE
Q 001279 200 -ALVILWDVSEAQI 212 (1108)
Q Consensus 200 -g~V~lWdl~~~~~ 212 (1108)
..|.+||+.+++.
T Consensus 151 ~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 151 KTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEEEEETTTTEE
T ss_pred cceEEEEECCCCeE
Confidence 4688899988876
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.24 E-value=1.7e-10 Score=132.99 Aligned_cols=99 Identities=5% Similarity=0.009 Sum_probs=63.2
Q ss_pred EEEEcCCCeeeeeecCC-C-----CeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001279 101 QVWSLESRSLACCLKWE-S-----NITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 101 ~vWd~~s~~~~~~~~~~-~-----~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1108)
..+|..++..+..+... . .+..++|+|++++|+.... +|...||.++...+...+ +....
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~--------- 79 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGK--------- 79 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSS---------
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCC---------
Confidence 34477777665555322 2 2678899999999876654 454455666655565543 22111
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
......+.|+| ++++|+.+..++.|.+||+.+++...+.
T Consensus 80 --~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~~~~~~ 118 (396)
T 3c5m_A 80 --GDNTFGGFIST--DERAFFYVKNELNLMKVDLETLEEQVIY 118 (396)
T ss_dssp --CBCTTTCEECT--TSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred --CCccccceECC--CCCEEEEEEcCCcEEEEECCCCCcEEEE
Confidence 01122357888 7888989999999999999988765443
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.23 E-value=4.1e-09 Score=115.68 Aligned_cols=198 Identities=11% Similarity=0.152 Sum_probs=136.9
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeC------CCCCCEEEEEEe-eCCCEEEEEeC-CCcEEEEEcC
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS------PSQLPYKNLEFL-QNQGFLISITN-DNEIQVWSLE 106 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~------~h~~~V~~l~fs-~d~~~L~S~s~-d~~I~vWd~~ 106 (1108)
...+.+++++|++.++++.+.++.|++|+.++....... .|...+..++|. +++..+++... ++.|.+|| .
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~ 107 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q 107 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence 456899999999999988888999999998865443332 234578999996 56544444433 88999999 5
Q ss_pred CCeeeeeec--CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 107 SRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 107 s~~~~~~~~--~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
+++.+..+. ....+.+++++++++++++...++.|++|+.+ +..... +....+ ...+.++++
T Consensus 108 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~~~~~-~~~~~~------------~~~p~~i~~ 171 (286)
T 1q7f_A 108 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN---GNVLHK-FGCSKH------------LEFPNGVVV 171 (286)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEE-EECTTT------------CSSEEEEEE
T ss_pred CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC---CCEEEE-eCCCCc------------cCCcEEEEE
Confidence 666665553 33578999999999877766678878777643 333321 111111 145899999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
+| ++..+++.+.++.|.+||.....+..+... .....+.++++ +++|..
T Consensus 172 ~~--~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~----------------------------g~~~~p~~i~~-d~~G~l 220 (286)
T 1q7f_A 172 ND--KQEIFISDNRAHCVKVFNYEGQYLRQIGGE----------------------------GITNYPIGVGI-NSNGEI 220 (286)
T ss_dssp CS--SSEEEEEEGGGTEEEEEETTCCEEEEESCT----------------------------TTSCSEEEEEE-CTTCCE
T ss_pred CC--CCCEEEEECCCCEEEEEcCCCCEEEEEccC----------------------------CccCCCcEEEE-CCCCCE
Confidence 87 677555556789999999865433332211 00245778886 489998
Q ss_pred EEEEEccC-cEEEEecC
Q 001279 265 LAVGYIDG-DILLWNTS 280 (1108)
Q Consensus 265 l~sg~~DG-~I~lWd~~ 280 (1108)
+++...++ .|.+|+..
T Consensus 221 ~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEECSSSCEEEEECTT
T ss_pred EEEeCCCCEEEEEECCC
Confidence 88887776 99999954
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.23 E-value=2.1e-09 Score=121.51 Aligned_cols=94 Identities=16% Similarity=-0.001 Sum_probs=72.7
Q ss_pred CceEEEEcCCCCEEEEEE---------CCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC-----cEEE
Q 001279 37 TASILAFDHIQRLLAIAT---------LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN-----EIQV 102 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs---------~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~-----~I~v 102 (1108)
.+...++ ||+.||... .++.|++|+.++.+...+ ..+..++|+|||.+|+.++.++ .|.+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 3566777 888888753 257899999977655444 5688999999999999887542 3888
Q ss_pred EEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC
Q 001279 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDE 137 (1108)
Q Consensus 103 Wd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~ 137 (1108)
||+.+++......... +.+++|+|++++|+.++.
T Consensus 90 ~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~ 123 (347)
T 2gop_A 90 ADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGF 123 (347)
T ss_dssp EETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEE
T ss_pred EECCCCceEEEEcCCC-ccceeECCCCCEEEEEEc
Confidence 8999887766655555 999999999998888763
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.16 E-value=3e-09 Score=119.64 Aligned_cols=193 Identities=10% Similarity=0.032 Sum_probs=132.0
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee-c
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-K 115 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~-~ 115 (1108)
.+.+++|+|++..++....++.++.| .......+..+...+..++|++++..+++...++.|.+||..+++..... .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 84 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS 84 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred ccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence 36778899998888877888999999 33334445556667899999999887777788899999999988766544 4
Q ss_pred CCCCeeEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 116 WESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 116 ~~~~Itsl~~~~~~~~l~vg~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
....+.+++++++++++++...+ +.|++|+.+ .+.+... +.... ....+.++++.| ++.
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~--~~~~~~~---~~~~~----------~~~~~~~i~~d~--~g~ 147 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN--GDNLQDI---IEDLS----------TAYCIDDMVFDS--KGG 147 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT--SCSCEEE---ECSSS----------SCCCEEEEEECT--TSC
T ss_pred CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC--CCEEEEE---EccCc----------cCCcccceEECC--CCC
Confidence 56789999999999877776665 566665544 3333211 11100 114689999988 677
Q ss_pred EEEEEEC-------CCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCE
Q 001279 192 RVLIAYE-------NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1108)
Q Consensus 192 ~ll~~~~-------dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1108)
++++.. .+.|..||..+++...+... ...+.+++|. |+|+.
T Consensus 148 -l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------------------~~~~~~i~~~-~dg~~ 195 (333)
T 2dg1_A 148 -FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN------------------------------ISVANGIALS-TDEKV 195 (333)
T ss_dssp -EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE------------------------------ESSEEEEEEC-TTSSE
T ss_pred -EEEEeccccccCCCceEEEEeCCCCEEEEeecC------------------------------CCcccceEEC-CCCCE
Confidence 444444 24556666655555433211 2346778875 99986
Q ss_pred EEEE-EccCcEEEEecC
Q 001279 265 LAVG-YIDGDILLWNTS 280 (1108)
Q Consensus 265 l~sg-~~DG~I~lWd~~ 280 (1108)
|+.+ ..++.|.+|+..
T Consensus 196 l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 196 LWVTETTANRLHRIALE 212 (333)
T ss_dssp EEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCeEEEEEec
Confidence 6554 457889999875
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.16 E-value=5.2e-09 Score=117.72 Aligned_cols=212 Identities=13% Similarity=0.038 Sum_probs=138.1
Q ss_pred CCCceEEEEcCCCCEEEEEECC------------------------CcEEEEecCCcceEEeC--CCCCCEEEEEEeeCC
Q 001279 35 PATASILAFDHIQRLLAIATLD------------------------GRIKVIGGDGIEGLLIS--PSQLPYKNLEFLQNQ 88 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~d------------------------G~I~iw~~~~~~~~~~~--~h~~~V~~l~fs~d~ 88 (1108)
-+.+..+|++|+++++++...+ ++|.+||.++.+++... .+-.....|+|++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4568999999999999888877 47999999755554332 344578999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCe-eeeeec----------CCCCeeEEEEec-CCCEEEEEe-CCCcEEEEEEecCCCeeee
Q 001279 89 GFLISITNDNEIQVWSLESRS-LACCLK----------WESNITAFSVIS-GSHFMYIGD-ENGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~~-~~~~~~----------~~~~Itsl~~~~-~~~~l~vg~-~dg~V~vw~~d~~~~~l~~ 155 (1108)
..+++.+.++.|.+||..... .+..+. +......++++| ++.++++.+ .++.|++|+. ++.+..
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~---~g~~~~ 179 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP---SGKFVT 179 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT---TSCEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC---CCCEEE
Confidence 988887888999999987652 344332 123688999999 666666654 5887777663 245443
Q ss_pred eceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCC
Q 001279 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1108)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1108)
. +...... ..........+.+|++.|. .+..+++...++.|++||..+++.+......
T Consensus 180 ~---~~~~g~~--~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---------------- 237 (329)
T 3fvz_A 180 Q---WGEESSG--SSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA---------------- 237 (329)
T ss_dssp E---ECEECCS--SSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT----------------
T ss_pred E---eccCCCC--CCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc----------------
Confidence 2 2211100 0000111245899999883 2665566667889999999977776554320
Q ss_pred CCcccCcCCCCCCCCceeEEEeecC------CCCEEEEEEccCcEEEEecCCCC
Q 001279 236 STFLEGISEHQPEEKEISALCWASS------SGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~sp------dg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
.....+.+++|. | +|...++...++.|++|+..+++
T Consensus 238 -----------~~~~~~~~~~~~-pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 238 -----------SFGRNVFAISYI-PGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp -----------TTTTCEEEEEEE-TTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred -----------ccCCCcceeeec-CCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 003456677765 7 33333333445589999987663
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.15 E-value=6.1e-09 Score=114.29 Aligned_cols=198 Identities=8% Similarity=0.091 Sum_probs=136.1
Q ss_pred CCceEEEE-cCCCCEEEEEEC-CCcEEEEecCCcceEEe-CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001279 36 ATASILAF-DHIQRLLAIATL-DGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 36 ~~is~la~-sp~~~~LA~Gs~-dG~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~ 112 (1108)
..+..+++ ++++.++++... ++.|++|+.++...... ..+...+..++|.+++..+++...++.|.+||.. ++.+.
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 155 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLH 155 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEE
Confidence 46789999 577777766643 89999999766544333 3344578999999998877777778999999965 44444
Q ss_pred eec---CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 113 CLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 113 ~~~---~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
.+. ....+.+++++++++++++...++.|++|+.+ +.... .+..+. ....+.++++.| +
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~~~~---~~~~~g----------~~~~p~~i~~d~--~ 217 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE---GQYLR---QIGGEG----------ITNYPIGVGINS--N 217 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT---CCEEE---EESCTT----------TSCSEEEEEECT--T
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC---CCEEE---EEccCC----------ccCCCcEEEECC--C
Confidence 443 33568999999999876666778888888753 33332 132110 014589999987 6
Q ss_pred CCEEEEEECCC-eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 190 GNRVLIAYENA-LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 190 ~~~ll~~~~dg-~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
|..+++...++ .|.+||.....+..+..+ .....+.++++. |+|+.+++
T Consensus 218 G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~----------------------------~~~~~~~~i~~~-~~g~l~vs- 267 (286)
T 1q7f_A 218 GEILIADNHNNFNLTIFTQDGQLISALESK----------------------------VKHAQCFDVALM-DDGSVVLA- 267 (286)
T ss_dssp CCEEEEECSSSCEEEEECTTSCEEEEEEES----------------------------SCCSCEEEEEEE-TTTEEEEE-
T ss_pred CCEEEEeCCCCEEEEEECCCCCEEEEEccc----------------------------CCCCcceeEEEC-CCCcEEEE-
Confidence 77566666665 999999765443333222 002346788875 89986666
Q ss_pred EccCcEEEEecCCC
Q 001279 269 YIDGDILLWNTSTT 282 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1108)
+.|+.|++|++...
T Consensus 268 ~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 268 SKDYRLYIYRYVQL 281 (286)
T ss_dssp ETTTEEEEEECSCC
T ss_pred CCCCeEEEEEcccc
Confidence 67999999998643
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.14 E-value=7.2e-09 Score=129.70 Aligned_cols=150 Identities=7% Similarity=0.032 Sum_probs=101.4
Q ss_pred CCCCEEEEEECCC-----cEEEEecCCc-ceEEe------CCCCCCEEEEEEeeCCCEEEEEeCCC-----cEEEEEcCC
Q 001279 45 HIQRLLAIATLDG-----RIKVIGGDGI-EGLLI------SPSQLPYKNLEFLQNQGFLISITNDN-----EIQVWSLES 107 (1108)
Q Consensus 45 p~~~~LA~Gs~dG-----~I~iw~~~~~-~~~~~------~~h~~~V~~l~fs~d~~~L~S~s~d~-----~I~vWd~~s 107 (1108)
|+|++++....++ .|.+.+..+. ..+++ ..|...+..++|||||.+|+.++.++ +|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8899888766442 4455554332 22221 22445689999999999998776543 899999999
Q ss_pred CeeeeeecCCCCeeEEEEecCCCEEEEEeCCCc----------------EEEEEEecCCCeeeeeceeecccccccccCC
Q 001279 108 RSLACCLKWESNITAFSVISGSHFMYIGDENGL----------------MSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1108)
Q Consensus 108 ~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~----------------V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1108)
++.+........+..++|+|+++.|+.+..++. |++|++......-.. .|..+.+.
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~-v~~~~~~~------- 232 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEP------- 232 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCT-------
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE-EeccCCCC-------
Confidence 987764332334778999999999999887765 878877543211111 12222222
Q ss_pred CCCCCCCeEEEecccCCCCCEEEEEEC-----CCeEEEEEccC
Q 001279 172 PLLSHQPVVGVLPHPNSSGNRVLIAYE-----NALVILWDVSE 209 (1108)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~-----dg~V~lWdl~~ 209 (1108)
..+.++.|+| +|++|++++. +..|.+||+.+
T Consensus 233 -----~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 233 -----KWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp -----TCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred -----eEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcc
Confidence 4578999988 7888887765 56899999986
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.14 E-value=1.4e-09 Score=135.76 Aligned_cols=156 Identities=6% Similarity=-0.015 Sum_probs=102.5
Q ss_pred CCCCEEEEEECCC---c--EEEEecCCcc-eEEe------CCCCCCEEEEEEeeCCCEEEEE-----eCCCcEEEEEcCC
Q 001279 45 HIQRLLAIATLDG---R--IKVIGGDGIE-GLLI------SPSQLPYKNLEFLQNQGFLISI-----TNDNEIQVWSLES 107 (1108)
Q Consensus 45 p~~~~LA~Gs~dG---~--I~iw~~~~~~-~~~~------~~h~~~V~~l~fs~d~~~L~S~-----s~d~~I~vWd~~s 107 (1108)
|+|++++....++ + |.+.+..+.+ ..+. .+|...+..++|||||.+|+-. +.+.+|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7899988877654 3 4444443322 2222 2355679999999999998843 3346899999999
Q ss_pred Ceee-eeecCCCCeeEEEEecCCCEEEEEeCCCc-------------EEEEEEecCCC--eeeeeceeecccccccccCC
Q 001279 108 RSLA-CCLKWESNITAFSVISGSHFMYIGDENGL-------------MSVIKYDADEG--KLFQLPYNISADALSEKAGF 171 (1108)
Q Consensus 108 ~~~~-~~~~~~~~Itsl~~~~~~~~l~vg~~dg~-------------V~vw~~d~~~~--~l~~~~~~i~~~~~~~~~~~ 171 (1108)
++.+ ...........++|+|+++.|+.++.+.. |++|++..... .++ |..+.+.
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv---~~~~~~~------- 226 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV---HERTGDP------- 226 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE---ECCCCCT-------
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE---EecCCCC-------
Confidence 9875 22111112268999999999999888765 88888765321 122 2233222
Q ss_pred CCCCCCCeEEEecccCCCCCEEEEEECCC----eEEEEEccCCeEEEEeC
Q 001279 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENA----LVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~dg----~V~lWdl~~~~~~~~~~ 217 (1108)
..+.++.|+| +|++|++++.++ .|.+||..++....+..
T Consensus 227 -----~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 269 (695)
T 2bkl_A 227 -----TTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK 269 (695)
T ss_dssp -----TCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE
T ss_pred -----EEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCceEEeec
Confidence 4688999988 788788777665 66667665555544443
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.11 E-value=1.3e-08 Score=112.27 Aligned_cols=194 Identities=9% Similarity=-0.019 Sum_probs=137.5
Q ss_pred CCCceEEEEcCCCC-EEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001279 35 PATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 35 ~~~is~la~sp~~~-~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~ 113 (1108)
..-+..++|+|+++ ++++++.++.|++|+.++. ......+...+..++|++++.++++...++.|.+||..+++....
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 45578899999998 8889999999999999876 544555667899999999998777776678999999988875443
Q ss_pred ecC-----CCCeeEEEEecCCCEEEEEeCC---------------CcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001279 114 LKW-----ESNITAFSVISGSHFMYIGDEN---------------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 114 ~~~-----~~~Itsl~~~~~~~~l~vg~~d---------------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1108)
... ...+..++++++++++++.... +.-.||.++.. +++.. +..+.
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~----~~~~~--------- 171 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA----PIRDR--------- 171 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE----EECCC---------
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE----eecCC---------
Confidence 321 2356789999999877763211 12267888765 44432 22211
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEcc-CCeE---EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCC
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS-EAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1108)
..+.+++|+| ++..|++.+.++.|.+||+. .+.+ ...+.. ..
T Consensus 172 ---~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~-----------------------------~~ 217 (296)
T 3e5z_A 172 ---VKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV-----------------------------EP 217 (296)
T ss_dssp ---SSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC-----------------------------SS
T ss_pred ---CCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC-----------------------------CC
Confidence 4578999988 78877666678899999997 4544 122210 03
Q ss_pred CceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 250 KEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
..+.++++. ++|...++. ++.|.+|+..
T Consensus 218 ~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 218 GKTDGLRVD-AGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SCCCSEEEB-TTSCEEEEE--TTEEEEECTT
T ss_pred CCCCeEEEC-CCCCEEEEc--CCeEEEECCC
Confidence 345567864 899866655 8889999975
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.10 E-value=8.8e-09 Score=115.82 Aligned_cols=202 Identities=12% Similarity=0.063 Sum_probs=140.7
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcc--eEEe---------CCCCCCEEEEEEee-CCCEEEEEe-CCCcE
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLI---------SPSQLPYKNLEFLQ-NQGFLISIT-NDNEI 100 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~--~~~~---------~~h~~~V~~l~fs~-d~~~L~S~s-~d~~I 100 (1108)
.-..+..++++|+++++++.+.+++|++|+.++.. +... ..+-.....|+|+| ++..+++-+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 34578899999999999998889999999997762 3322 23444689999999 777777776 68999
Q ss_pred EEEEcCCCeeeeeecCC-----------CCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001279 101 QVWSLESRSLACCLKWE-----------SNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1108)
Q Consensus 101 ~vWd~~s~~~~~~~~~~-----------~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1108)
++|| ..+..+..+... .....++++++ +.++++...++.|++|+.+ ++++... +..+.+.
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--~G~~~~~-~~~~~~~---- 240 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD--TKEFVRE-IKHASFG---- 240 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT--TCCEEEE-ECCTTTT----
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC--CCcEEEE-EeccccC----
Confidence 9999 556666555321 23889999999 4544555567878777765 3555532 2222222
Q ss_pred cCCCCCCCCCeEEEecccCCCCCEEEE-------EECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccC
Q 001279 169 AGFPLLSHQPVVGVLPHPNSSGNRVLI-------AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1108)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~-------~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1108)
..+.+++|+| +..+.+ .+.+..|++||+.+++++..++...
T Consensus 241 --------~~~~~~~~~p---g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~--------------------- 288 (329)
T 3fvz_A 241 --------RNVFAISYIP---GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR--------------------- 288 (329)
T ss_dssp --------TCEEEEEEET---TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS---------------------
T ss_pred --------CCcceeeecC---CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC---------------------
Confidence 5688999988 321222 2234589999999998877654200
Q ss_pred cCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
.....+.++++ +|+|..+++...++.|++|++..
T Consensus 289 -----~~~~~p~~ia~-~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 289 -----KHFDMPHDIVA-SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -----SCCSSEEEEEE-CTTSEEEEEESSSCCEEEEEEEE
T ss_pred -----CccCCeeEEEE-CCCCCEEEEECCCCEEEEEeCCc
Confidence 01445788996 59998888888899999999864
No 186
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.10 E-value=2e-09 Score=121.97 Aligned_cols=178 Identities=13% Similarity=0.033 Sum_probs=126.9
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcc-----------eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE-----------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~-----------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~ 105 (1108)
.++.|++++..+++|+|+.++ +++|+..... .....++.. |++|+| |+.+|+.+ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 489999999999999999885 6669863222 222334666 999999 87888888 7899999999
Q ss_pred CCCeeeeee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 106 ESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 106 ~s~~~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
.+....... .+...+.++.+.+. .+++++.||.|++|++.. +...+ +. ..|+|++|
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~--~~~~~----~~---------------~~Vs~v~W 170 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT--KSTKQ----LA---------------QNVTSFDV 170 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT--CCEEE----EE---------------ESEEEEEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC--Ccccc----cc---------------CCceEEEE
Confidence 876543333 55667877766544 388999999999999864 22221 11 45999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeE--EEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1108)
+| .| +++|+.||.+++|+.+.+.+ ...... ++ .+..+..+...|.+++|. +++
T Consensus 171 Sp--kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~---------------Pp-----~~~~~~~~~~~V~sI~wl-~~~ 225 (388)
T 1xip_A 171 TN--SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSL---------------PS-----ELEELPVEEYSPLSVTIL-SPQ 225 (388)
T ss_dssp CS--SE--EEEEETTSCEEEEEEETTEEEEEEEECC---------------CH-----HHHTSCTTTSEEEEEEES-SSS
T ss_pred cC--Cc--eEEEEcCCcEEEEcCCCccccccceecC---------------Cc-----ccccccCCCeeEEEEEEe-cCC
Confidence 99 45 78999999999999998875 333311 00 000000126789999998 788
Q ss_pred CEEEE
Q 001279 263 SILAV 267 (1108)
Q Consensus 263 ~~l~s 267 (1108)
.++++
T Consensus 226 ~flv~ 230 (388)
T 1xip_A 226 DFLAV 230 (388)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77764
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.09 E-value=3e-07 Score=100.93 Aligned_cols=194 Identities=9% Similarity=-0.013 Sum_probs=130.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-Ee-CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~-~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~ 112 (1108)
...+.++++++++.++++...++.|.+|+.+ .... .. ..+...+..+++.+++..+++...++.|..||.. ++...
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 91 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKE 91 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEE
Confidence 3578999999999988766667999999988 3333 22 2345679999999998877777668899999987 33321
Q ss_pred -eec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 113 -CLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 113 -~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
... ....+.++++++++.+.++...++.|.+|+. ++.+.. +..+... ..+.++++.| ++
T Consensus 92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~---~g~~~~--~~~~~~~------------~~~~~i~~~~--~g 152 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD---DGKIRE--YELPNKG------------SYPSFITLGS--DN 152 (299)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT---TCCEEE--EECSSTT------------CCEEEEEECT--TS
T ss_pred EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC---CCCEEE--ecCCCCC------------CCCceEEEcC--CC
Confidence 122 3457899999998887776666776666554 344432 2222211 4588999977 67
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001279 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1108)
Q Consensus 191 ~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1108)
..+++...++.|..||. +++...+... .....+.++++. ++|...++...
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~----------------------------~~~~~~~~i~~~-~~g~l~v~~~~ 202 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEFKIP----------------------------TPASGPVGITKG-NDDALWFVEII 202 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECS----------------------------STTCCEEEEEEC-TTSSEEEEETT
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEeeCC----------------------------CCCCcceeEEEC-CCCCEEEEccC
Confidence 74444555788999998 6655443111 003346678754 78886666556
Q ss_pred cCcEEEEec
Q 001279 271 DGDILLWNT 279 (1108)
Q Consensus 271 DG~I~lWd~ 279 (1108)
++.|..|+.
T Consensus 203 ~~~i~~~~~ 211 (299)
T 2z2n_A 203 GNKIGRITT 211 (299)
T ss_dssp TTEEEEECT
T ss_pred CceEEEECC
Confidence 777888876
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.07 E-value=3.5e-07 Score=100.32 Aligned_cols=155 Identities=10% Similarity=0.078 Sum_probs=103.0
Q ss_pred CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee--cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001279 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~--~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~ 152 (1108)
+...+.++++.+++..+++...++.|.+||.. ++..... .....+.++++++++.+.++...++.|..|+.+ +.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~ 88 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK---GI 88 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT---SC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC---Cc
Confidence 44679999999998877776668899999998 5543322 234679999999999877766667766555533 33
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCC
Q 001279 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1108)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1108)
+.. +.++... ..+.++++.| ++..+++...++.|.+||. +++.......
T Consensus 89 ~~~--~~~~~~~------------~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~-------------- 137 (299)
T 2z2n_A 89 IKE--YTLPNPD------------SAPYGITEGP--NGDIWFTEMNGNRIGRITD-DGKIREYELP-------------- 137 (299)
T ss_dssp EEE--EECSSTT------------CCEEEEEECT--TSCEEEEETTTTEEEEECT-TCCEEEEECS--------------
T ss_pred EEE--EeCCCcC------------CCceeeEECC--CCCEEEEecCCceEEEECC-CCCEEEecCC--------------
Confidence 332 2232211 4689999977 6774455556788999998 5554433211
Q ss_pred CCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEec
Q 001279 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1108)
.....+.++++. ++|...++...++.|..|+.
T Consensus 138 --------------~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 138 --------------NKGSYPSFITLG-SDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp --------------STTCCEEEEEEC-TTSCEEEEETTTTEEEEECT
T ss_pred --------------CCCCCCceEEEc-CCCCEEEEeCCCCEEEEEcC
Confidence 003356778864 88877766666677887776
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.05 E-value=7.6e-08 Score=108.03 Aligned_cols=206 Identities=13% Similarity=0.110 Sum_probs=141.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEe-CCCCCCEEEEEEeeCCCEEEEEeCC----CcEEEEEcCC
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITND----NEIQVWSLES 107 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~L~S~s~d----~~I~vWd~~s 107 (1108)
+....+.+++|+|+++++++++.++.|++|+.++.+.... ..+...+.+++|++++.++++...+ +.|.+||..+
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 4455678999999999888999999999999976655433 3566789999999998877776666 6899999988
Q ss_pred Ceeeeee---cCCCCeeEEEEecCCCEEEEEeC----CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 108 RSLACCL---KWESNITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 108 ~~~~~~~---~~~~~Itsl~~~~~~~~l~vg~~----dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
+.....+ .....+.+++++++++++++... ++...||.++...+++... .... ..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~------------~~~~ 185 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI----IQNI------------SVAN 185 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE----EEEE------------SSEE
T ss_pred CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe----ecCC------------Cccc
Confidence 8764333 23457899999999986665543 1245778887654454431 1111 3478
Q ss_pred EEecccCCCCCEEEEE-ECCCeEEEEEccC-Ce-EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEe
Q 001279 181 GVLPHPNSSGNRVLIA-YENALVILWDVSE-AQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~-~~dg~V~lWdl~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1108)
+++|+| ++..|+++ ..++.|.+||+.+ +. ....... . ... . .....+..+++
T Consensus 186 ~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~-~-~~~--~-------------------~~~~~~~~i~~ 240 (333)
T 2dg1_A 186 GIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGAT-I-PYY--F-------------------TGHEGPDSCCI 240 (333)
T ss_dssp EEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE-E-EEE--C-------------------CSSSEEEEEEE
T ss_pred ceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccce-E-EEe--c-------------------CCCCCCCceEE
Confidence 899988 67756554 4578999999964 22 2111000 0 000 0 00134667886
Q ss_pred ecCCCCEEEEEEccCcEEEEecC
Q 001279 258 ASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
. ++|...++...++.|.+||..
T Consensus 241 d-~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 241 D-SDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp B-TTCCEEEEEETTTEEEEECTT
T ss_pred C-CCCCEEEEEcCCCEEEEECCC
Confidence 4 899988888788999999874
No 190
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.02 E-value=3.8e-08 Score=123.68 Aligned_cols=148 Identities=8% Similarity=0.042 Sum_probs=95.1
Q ss_pred CCCCEEEEEECCCc---EEEEe--cC---Ccc-eEE------eCCCCCCEEEEEEeeCCCEEEEEeCC-----CcEEEEE
Q 001279 45 HIQRLLAIATLDGR---IKVIG--GD---GIE-GLL------ISPSQLPYKNLEFLQNQGFLISITND-----NEIQVWS 104 (1108)
Q Consensus 45 p~~~~LA~Gs~dG~---I~iw~--~~---~~~-~~~------~~~h~~~V~~l~fs~d~~~L~S~s~d-----~~I~vWd 104 (1108)
|+|++++....++. -.||- .. +.+ ..+ ..+|...+..++|||||.+|+.++.+ .+|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 89999888775533 45554 33 222 222 22344478999999999999887654 4699999
Q ss_pred cCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCc--------------EEEEEEecCCC--eeeeeceeecccccccc
Q 001279 105 LESRSLACCLKWESNITAFSVISGSHFMYIGDENGL--------------MSVIKYDADEG--KLFQLPYNISADALSEK 168 (1108)
Q Consensus 105 ~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~--------------V~vw~~d~~~~--~l~~~~~~i~~~~~~~~ 168 (1108)
+.+++.+........+..++|+|+ +.|+.+..++. |++|++.+... .+. |..+.+.
T Consensus 196 l~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv---~~~~~~~---- 267 (741)
T 1yr2_A 196 VADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV---FATPELP---- 267 (741)
T ss_dssp TTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE---ECCTTCT----
T ss_pred CCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE---eccCCCC----
Confidence 999987654322223467899999 98888876654 66666543211 121 2222111
Q ss_pred cCCCCCCCCCeEEEecccCCCCCEEEEEECCC-----eEEEEEccCC
Q 001279 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-----LVILWDVSEA 210 (1108)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-----~V~lWdl~~~ 210 (1108)
..+.++.|+| +|++|++...++ .|.+||+.++
T Consensus 268 --------~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 268 --------KRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp --------TCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred --------eEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCC
Confidence 3588999988 788788777544 7788887765
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.99 E-value=1.2e-08 Score=127.83 Aligned_cols=200 Identities=9% Similarity=0.025 Sum_probs=134.3
Q ss_pred CCCCceEEEEcCCCCEEEEEECCC-----cEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCc---------
Q 001279 34 IPATASILAFDHIQRLLAIATLDG-----RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNE--------- 99 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG-----~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~--------- 99 (1108)
+...+..++|||||++||.+..++ .|++||+.+.+..........+..++|+|||..|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 334578899999999999887654 899999988776543222334778999999999999988765
Q ss_pred -------EEEEEcCCCee----eeee-cCCCCeeEEEEecCCCEEEEEeC-----CCcEEEEEEec------CCCeeeee
Q 001279 100 -------IQVWSLESRSL----ACCL-KWESNITAFSVISGSHFMYIGDE-----NGLMSVIKYDA------DEGKLFQL 156 (1108)
Q Consensus 100 -------I~vWd~~s~~~----~~~~-~~~~~Itsl~~~~~~~~l~vg~~-----dg~V~vw~~d~------~~~~l~~~ 156 (1108)
|.+|++.+++. +... .+...+..+.|+|++++|+.+.. +..|++|+++. ....+..
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~- 281 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK- 281 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE-
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE-
Confidence 99999988762 2121 23455789999999999988765 45677777654 1112222
Q ss_pred ceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC----CeEEEEEccCCe---EEEEeCCCcccccccccC
Q 001279 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----ALVILWDVSEAQ---IIFVGGGKDLQLKDGVVD 229 (1108)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d----g~V~lWdl~~~~---~~~~~~~~~~~~~~~~~~ 229 (1108)
+..+. ..+.. .|+| +|..|+..+.. +.|.+||+.++. ...+..+.
T Consensus 282 ---l~~~~------------~~~~~-~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---------- 333 (710)
T 2xdw_A 282 ---LIDNF------------EGEYD-YVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH---------- 333 (710)
T ss_dssp ---EECSS------------SSCEE-EEEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC----------
T ss_pred ---eeCCC------------CcEEE-EEec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC----------
Confidence 22222 23333 3666 67777776654 368999998763 23333320
Q ss_pred CCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcE--EEEecCC
Q 001279 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI--LLWNTST 281 (1108)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I--~lWd~~~ 281 (1108)
+...+.+++|. +++..+++...||.. .+|++.+
T Consensus 334 ------------------~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 334 ------------------EKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp ------------------SSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTT
T ss_pred ------------------CCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCC
Confidence 02357788886 778888888888854 5555533
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.97 E-value=1.9e-08 Score=109.87 Aligned_cols=188 Identities=9% Similarity=0.046 Sum_probs=135.6
Q ss_pred CCCEEEEEECCCcEEEEecCCcceE-EeCCCC-CCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCC--CCee
Q 001279 46 IQRLLAIATLDGRIKVIGGDGIEGL-LISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNIT 121 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~-~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~--~~It 121 (1108)
.+++|++++.|++|++||..+.+.+ ....+. ..+.++.++|+|..|+ +.++.|..||. +++.+..+... ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 4688999999999999999555444 334444 4789999999998888 45788999999 78888888643 4788
Q ss_pred EEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCC
Q 001279 122 AFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1108)
Q Consensus 122 sl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1108)
++.+.++++++++.+. ++ +++.++. ++++... +.+.... . .....+..+.+.| +|+++++.+.++
T Consensus 81 ~~~~~~dG~~lv~~~~~~~--~v~~vd~-~Gk~l~~-~~~~~~~-------~-~~~~~~~~v~~~~--~G~~lv~~~~~~ 146 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPS--TILEVNM-KGEVLSK-TEFETGI-------E-RPHAQFRQINKNK--KGNYLVPLFATS 146 (276)
T ss_dssp EEEECTTSCEEEEEESTTE--EEEEECT-TSCEEEE-EEECCSC-------S-SGGGSCSCCEECT--TSCEEEEETTTT
T ss_pred ccEECCCCCEEEEecCCCC--EEEEEeC-CCCEEEE-EeccCCC-------C-cccccccCceECC--CCCEEEEecCCC
Confidence 9999999999998876 55 5666665 4555432 3222110 0 0002233444544 788888888999
Q ss_pred eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 201 ~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
.|..||.+ ++.++.++. ...+.++... ++|..++++..++.|..+|..
T Consensus 147 ~v~~~d~~-G~~~w~~~~------------------------------~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 147 EVREIAPN-GQLLNSVKL------------------------------SGTPFSSAFL-DNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp EEEEECTT-SCEEEEEEC------------------------------SSCCCEEEEC-TTSCEEEECBTTSEEEEECTT
T ss_pred EEEEECCC-CCEEEEEEC------------------------------CCCccceeEc-CCCCEEEEeCCCCeEEEEeCc
Confidence 99999998 887776643 2234445544 899999999888899999988
Q ss_pred CC
Q 001279 281 TT 282 (1108)
Q Consensus 281 ~~ 282 (1108)
++
T Consensus 195 tG 196 (276)
T 3no2_A 195 SN 196 (276)
T ss_dssp TC
T ss_pred CC
Confidence 66
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.96 E-value=6.6e-08 Score=106.63 Aligned_cols=198 Identities=11% Similarity=0.064 Sum_probs=131.6
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEe-CCC----CCCEEEEEEeeCCCEEEEEeC------------
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPS----QLPYKNLEFLQNQGFLISITN------------ 96 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~-~~h----~~~V~~l~fs~d~~~L~S~s~------------ 96 (1108)
....+.+++++|+++++++...++.|.+|+....+.... ... ...+..++|+++|.++++-+.
T Consensus 67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 445688999999999887777778999999844443322 111 124678999999988887321
Q ss_pred -----CCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCee-eeeceeecccccccccC
Q 001279 97 -----DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL-FQLPYNISADALSEKAG 170 (1108)
Q Consensus 97 -----d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l-~~~~~~i~~~~~~~~~~ 170 (1108)
.+.|..+|.. ++.............++|+|+++++++...++.|++|+++. ++.+ ... ..+...
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-~g~~~~~~-~~~~~~------- 216 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA-RGETEYQG-VHFTVE------- 216 (296)
T ss_dssp CCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS-SSCEEEEE-EEECCS-------
T ss_pred cccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC-CCcCcCCC-eEeeCC-------
Confidence 2345555554 55444445556788999999999887777788888888863 3454 211 112111
Q ss_pred CCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCC
Q 001279 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1108)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1108)
...+.++++.| +|. |.++. ++.|.+||........+..+ ..
T Consensus 217 -----~~~p~~i~~d~--~G~-l~v~~-~~~v~~~~~~g~~~~~~~~~------------------------------~~ 257 (296)
T 3e5z_A 217 -----PGKTDGLRVDA--GGL-IWASA-GDGVHVLTPDGDELGRVLTP------------------------------QT 257 (296)
T ss_dssp -----SSCCCSEEEBT--TSC-EEEEE-TTEEEEECTTSCEEEEEECS------------------------------SC
T ss_pred -----CCCCCeEEECC--CCC-EEEEc-CCeEEEECCCCCEEEEEECC------------------------------CC
Confidence 14567788976 787 66666 88999999874433333322 34
Q ss_pred ceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 251 EISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 251 ~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+++++|.+|+++.|++++.+| |..++..+.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred -ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 888997668999999988765 444455443
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.95 E-value=3.8e-07 Score=102.89 Aligned_cols=154 Identities=9% Similarity=-0.090 Sum_probs=103.2
Q ss_pred EEEeeCCCEEEEEeC-----CCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEe----------CCCcEEEEEE
Q 001279 82 LEFLQNQGFLISITN-----DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD----------ENGLMSVIKY 146 (1108)
Q Consensus 82 l~fs~d~~~L~S~s~-----d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~----------~dg~V~vw~~ 146 (1108)
....|++.+++.... ++.|.+.|..+++++..+....... ++++|+++++++++ .++.|.+||.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 445788888888875 6789999999999998885443334 99999999999886 3567777775
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC--CCeEEEEEccCCeEEEEeCCCccccc
Q 001279 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFVGGGKDLQLK 224 (1108)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~lWdl~~~~~~~~~~~~~~~~~ 224 (1108)
.+ .+.... ..++.-. .. ........+.|+| +|++++++.. ++.|.++|+.+++++....-
T Consensus 117 ~t--~~v~~~-I~v~~g~---r~----~~g~~P~~~a~sp--DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v------ 178 (386)
T 3sjl_D 117 VT--LLPTAD-IELPDAP---RF----LVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------ 178 (386)
T ss_dssp TT--CCEEEE-EEETTCC---CC----CBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------
T ss_pred CC--CeEEEE-EECCCcc---cc----ccCCCCceEEEcC--CCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC------
Confidence 53 444432 1122100 00 0002356788888 8998888864 68999999999988765421
Q ss_pred ccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
.+ . ... .....+.+++.+.||.+.+.+..+
T Consensus 179 ------------------------~g-~-~~~-~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 179 ------------------------PD-C-YHI-FPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp ------------------------CS-E-EEE-EEEETTEEEEEETTSCEEEEECCS
T ss_pred ------------------------CC-c-cee-ecCCCceeEEECCCCCEEEEECCC
Confidence 11 0 112 223446777888899988888754
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.94 E-value=2.3e-06 Score=93.75 Aligned_cols=193 Identities=8% Similarity=-0.011 Sum_probs=127.5
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceE--EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~ 113 (1108)
..+.++++++++.+.++...++.|.+|+.. .+.. ....+...+..+++.+++...++...++.|..||.. ++....
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 578899999999988777678999999987 3332 222334679999999998877776667889999988 554322
Q ss_pred e-c-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 114 L-K-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 114 ~-~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
. . ....+.++++++++++.++...++.|..+ +.. +++.. +.++... ..+.++++.| ++.
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~--~~~-g~~~~--~~~~~~~------------~~~~~i~~d~--~g~ 158 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKL--TAD-GTIYE--YDLPNKG------------SYPAFITLGS--DNA 158 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE--CTT-SCEEE--EECSSTT------------CCEEEEEECT--TSS
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEE--CCC-CCEEE--ccCCCCC------------CCceeEEECC--CCC
Confidence 2 1 23678999999988876666657755554 443 44442 2233211 4688999977 677
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc
Q 001279 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1108)
Q Consensus 192 ~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D 271 (1108)
.+++...++.|..||. +++...+... .....+.++++. ++|...++....
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~~~~~----------------------------~~~~~~~~i~~d-~~g~l~v~~~~~ 208 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEEYPLP----------------------------TNAAAPVGITSG-NDGALWFVEIMG 208 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECS----------------------------STTCCEEEEEEC-TTSSEEEEETTT
T ss_pred EEEEecCCCeEEEECC-CCcEEEeeCC----------------------------CCCCCcceEEEC-CCCCEEEEccCC
Confidence 4444444778899988 5544432210 002346677754 788766655556
Q ss_pred CcEEEEec
Q 001279 272 GDILLWNT 279 (1108)
Q Consensus 272 G~I~lWd~ 279 (1108)
+.|.+|+.
T Consensus 209 ~~i~~~~~ 216 (300)
T 2qc5_A 209 NKIGRITT 216 (300)
T ss_dssp TEEEEECT
T ss_pred CEEEEEcC
Confidence 66777765
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.92 E-value=1.2e-07 Score=102.62 Aligned_cols=196 Identities=10% Similarity=0.041 Sum_probs=129.5
Q ss_pred CceEEEEcCCCCEEE-EEECCCcEEEEecCCcceEEe-CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 37 TASILAFDHIQRLLA-IATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 37 ~is~la~sp~~~~LA-~Gs~dG~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
.+.+++++|++++++ +.+.++.|.+|+..+...... ..+...+..++|.+++..+++.. ++.|.+||..++......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 688999999999777 447789999999865444332 23335678999999987555555 889999998876543322
Q ss_pred -cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 115 -~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.....+.+++++++++++++...++.|.+|+ ........ . .... ...+.++++.| ++..+
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~--~~~~~~~~--~-~~~~------------~~~p~~i~~~~--~g~l~ 164 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLA--AGSKTQTV--L-PFTG------------LNDPDGVAVDN--SGNVY 164 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEEC--TTCCSCEE--C-CCCS------------CCSCCCEEECT--TCCEE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEE--CCCceeEe--e-cccc------------CCCceeEEEeC--CCCEE
Confidence 2235789999999988666666678776663 32222111 0 1110 13477888977 67745
Q ss_pred EEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCc
Q 001279 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~ 273 (1108)
++...++.|.+||..+......... ....+.++++. ++|..+++...++.
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~~~-----------------------------~~~~p~~i~~d-~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLPFT-----------------------------DITAPWGIAVD-EAGTVYVTEHNTNQ 214 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECCCS-----------------------------SCCSEEEEEEC-TTCCEEEEETTTSC
T ss_pred EEECCCCEEEEEecCCCceEeeccc-----------------------------CCCCceEEEEC-CCCCEEEEECCCCc
Confidence 5555678999999887654432110 02457788864 89977777777899
Q ss_pred EEEEecCCC
Q 001279 274 ILLWNTSTT 282 (1108)
Q Consensus 274 I~lWd~~~~ 282 (1108)
|.+|+....
T Consensus 215 v~~~~~~~~ 223 (270)
T 1rwi_B 215 VVKLLAGST 223 (270)
T ss_dssp EEEECTTCS
T ss_pred EEEEcCCCC
Confidence 999998643
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.89 E-value=7.4e-07 Score=98.73 Aligned_cols=213 Identities=10% Similarity=0.023 Sum_probs=137.0
Q ss_pred cceeeeeeCCCCCceEEEEcCCCCEEEE-------EECCCcEEEEecCCcceEEeCC-----CCCCEEEEEEeeCCCEEE
Q 001279 25 NLRIAVHYGIPATASILAFDHIQRLLAI-------ATLDGRIKVIGGDGIEGLLISP-----SQLPYKNLEFLQNQGFLI 92 (1108)
Q Consensus 25 ~~~~~~~~G~~~~is~la~sp~~~~LA~-------Gs~dG~I~iw~~~~~~~~~~~~-----h~~~V~~l~fs~d~~~L~ 92 (1108)
+++.....+--..+.+++|++++.++++ ++.++.|.+|+....+...... +...+..++++++++.|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~ 86 (314)
T 1pjx_A 7 EPLFTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF 86 (314)
T ss_dssp CCCCEEEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE
T ss_pred cHhHhhhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE
Confidence 3444333333345789999999998888 6788999999976554443222 456789999999944555
Q ss_pred EEeCCCcEEEEEcCCCeeeee-ecC-----CCCeeEEEEecCCCEEEEEeCCC-------------cEEEEEEecCCCee
Q 001279 93 SITNDNEIQVWSLESRSLACC-LKW-----ESNITAFSVISGSHFMYIGDENG-------------LMSVIKYDADEGKL 153 (1108)
Q Consensus 93 S~s~d~~I~vWd~~s~~~~~~-~~~-----~~~Itsl~~~~~~~~l~vg~~dg-------------~V~vw~~d~~~~~l 153 (1108)
.++..+.|.+||.. ++.... ... ...+.++++++++++.++...++ ...||.++.. +++
T Consensus 87 v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 87 VADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp EEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred EEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 55555689999998 765443 211 13588999999998766655441 2466777754 444
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEecc----cCCCCCEEEEE-ECCCeEEEEEcc-CCeEEEEeCCCcccccccc
Q 001279 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPH----PNSSGNRVLIA-YENALVILWDVS-EAQIIFVGGGKDLQLKDGV 227 (1108)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~----P~~~~~~ll~~-~~dg~V~lWdl~-~~~~~~~~~~~~~~~~~~~ 227 (1108)
... . ... ..+.+++++ | ++..|+++ ..++.|.+||+. .++......... +
T Consensus 165 ~~~---~-~~~------------~~~~~i~~~~~~d~--dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~------~ 220 (314)
T 1pjx_A 165 IQV---D-TAF------------QFPNGIAVRHMNDG--RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH------I 220 (314)
T ss_dssp EEE---E-EEE------------SSEEEEEEEECTTS--CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE------C
T ss_pred EEe---c-cCC------------CCcceEEEecccCC--CCCEEEEEECCCCeEEEEECCCCCccccceEEEE------C
Confidence 321 1 111 346788887 6 66556555 467899999987 454321110000 0
Q ss_pred cCCCCCCCCCcccCcCCCCCCC-CceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 228 VDSPSEGDSTFLEGISEHQPEE-KEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
. ... ..+..+++. ++|...++...++.|.+||..++
T Consensus 221 ----~--------------~~~~~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 221 ----P--------------GTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp ----C--------------CCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCB
T ss_pred ----C--------------CCCCCCCCceEEC-CCCCEEEEEcCCCEEEEEcCCCC
Confidence 0 001 456778865 89998888888899999998644
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.89 E-value=6.2e-06 Score=93.98 Aligned_cols=118 Identities=7% Similarity=-0.217 Sum_probs=78.2
Q ss_pred EeeCCCEEEEEeC--CC---cEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC----------CCcEEEEEEec
Q 001279 84 FLQNQGFLISITN--DN---EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDA 148 (1108)
Q Consensus 84 fs~d~~~L~S~s~--d~---~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~----------dg~V~vw~~d~ 148 (1108)
..|++.+++.+.. .+ +|.++|..+++++..+.....- .++++|++++++++.. ++.|.+++...
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 3466666666653 22 8899999999988777544434 9999999999999863 56787877653
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC--CCeEEEEEccCCeEEEE
Q 001279 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFV 215 (1108)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~lWdl~~~~~~~~ 215 (1108)
.+.... ..+++.... . .......+.++| +|++|+++.. ++.|.++| .+++++..
T Consensus 107 --~~~~~~-i~~~~~~~~------~-~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 107 --FLPIAD-IELPDAPRF------D-VGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred --CcEEEE-EECCCcccc------c-cCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 333321 111100000 0 002356889988 7988888874 47899999 98887644
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.88 E-value=2.3e-08 Score=124.71 Aligned_cols=197 Identities=9% Similarity=-0.041 Sum_probs=133.0
Q ss_pred CCCCCceEEEEcCCCCEEEE-----EECCCcEEEEecCCcceEEeCCCCCCE--EEEEEeeCCCEEEEEeCCCc------
Q 001279 33 GIPATASILAFDHIQRLLAI-----ATLDGRIKVIGGDGIEGLLISPSQLPY--KNLEFLQNQGFLISITNDNE------ 99 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~-----Gs~dG~I~iw~~~~~~~~~~~~h~~~V--~~l~fs~d~~~L~S~s~d~~------ 99 (1108)
|+...+..++|||||++||. |+.+..|++||+.+.+.+. ..+-..+ ..++|+|||..|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 34456888999999999995 4445689999998776541 1122223 68999999999999998766
Q ss_pred -------EEEEEcCCCe----eeeee-cCCCCeeEEEEecCCCEEEEEeCCC--cEEEEEEecCCCeeeeeceeeccccc
Q 001279 100 -------IQVWSLESRS----LACCL-KWESNITAFSVISGSHFMYIGDENG--LMSVIKYDADEGKLFQLPYNISADAL 165 (1108)
Q Consensus 100 -------I~vWd~~s~~----~~~~~-~~~~~Itsl~~~~~~~~l~vg~~dg--~V~vw~~d~~~~~l~~~~~~i~~~~~ 165 (1108)
|.+|++.++. ++... .+...+.++.|+|++++|++++.++ ...||.++...+.+.. +..+.
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~----l~~~~- 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL----LVKGV- 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE----EEECS-
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE----eecCC-
Confidence 9999998876 22222 2345788999999999988877655 4556666554444433 22222
Q ss_pred ccccCCCCCCCCCeEEEecccCCCCCEEEEEEC----CCeEEEEEccCCeE---EEEeCCCcccccccccCCCCCCCCCc
Q 001279 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----NALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1108)
Q Consensus 166 ~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----dg~V~lWdl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1108)
..+....+ | ++. +++.+. ++.|.+||+.++.. ..+..+.
T Consensus 272 -----------~~~~~~~~-~--~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~------------------- 317 (695)
T 2bkl_A 272 -----------GAKYEVHA-W--KDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED------------------- 317 (695)
T ss_dssp -----------SCCEEEEE-E--TTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-------------------
T ss_pred -----------CceEEEEe-c--CCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-------------------
Confidence 33555556 4 455 554443 57899999977642 3333220
Q ss_pred ccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 239 ~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
+...|.+++|. ++..+++...||..++|.+.
T Consensus 318 ---------~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 318 ---------SSASLLSVSIV--GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp ---------SSCEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred ---------CCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence 03357778875 67788888999999988764
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.87 E-value=3.6e-06 Score=92.23 Aligned_cols=155 Identities=7% Similarity=0.025 Sum_probs=100.4
Q ss_pred CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee-ec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001279 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC-LK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~-~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~ 152 (1108)
....+.+|.+.+++...++...++.|.+||.. ++.... .. ....+.++++++++++.++...++.|.. ++.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~--~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGK--LSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE--ECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEE--ECCC-CC
Confidence 34578899999998877777678999999988 554432 11 2357899999998886666555675554 4443 44
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCC
Q 001279 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1108)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1108)
... +.++... ..+.++++.| ++..+++...++.|..||.. ++.......
T Consensus 94 ~~~--~~~~~~~------------~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-------------- 142 (300)
T 2qc5_A 94 FTE--YPLPQPD------------SGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GTIYEYDLP-------------- 142 (300)
T ss_dssp EEE--EECSSTT------------CCEEEEEECS--TTCEEEEETTTTEEEEECTT-SCEEEEECS--------------
T ss_pred eEE--ecCCCCC------------CCCccceECC--CCCEEEEccCCCeEEEECCC-CCEEEccCC--------------
Confidence 432 3333221 4588999976 67744555557888999987 555433210
Q ss_pred CCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEec
Q 001279 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1108)
.....+.++++. ++|...++...++.|..|+.
T Consensus 143 --------------~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 143 --------------NKGSYPAFITLG-SDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp --------------STTCCEEEEEEC-TTSSEEEEETTTTEEEEECT
T ss_pred --------------CCCCCceeEEEC-CCCCEEEEecCCCeEEEECC
Confidence 003356777754 88886555555677777765
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.85 E-value=5.2e-07 Score=113.31 Aligned_cols=152 Identities=10% Similarity=0.003 Sum_probs=92.3
Q ss_pred ccCCCCcEEEEEecCC-----cEEEEeCCCC--c-eeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC----
Q 001279 490 KCHSVDRVYLAGYHDG-----SVRIWDATYP--V-FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF---- 557 (1108)
Q Consensus 490 ~~s~~~~llatgs~DG-----tVriWd~~~~--~-l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d---- 557 (1108)
.+++|++.|+..+.++ .|++||+.++ . ... +..+...+... ++|+++.|+..+.+
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------------l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA------------LIPDLKAQWDF-VDGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE------------EECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE------------ecCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 4677787777665443 7999998776 3 331 22333334444 35899988877653
Q ss_pred ceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcc-Cce
Q 001279 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN-LLS 636 (1108)
Q Consensus 558 G~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~vwd~~-~~~ 636 (1108)
+.|.+|++.... . .+...+..+...+..++++ ++.++++...||..+||.+. .+.
T Consensus 341 ~~l~~~d~~~~~-~----------------------~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 341 KKIVRVDLSGST-P----------------------RFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp CEEEEEECSSSS-C----------------------EEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred CEEEEEeCCCCc-c----------------------ccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 447777765521 0 1222333445567788887 56788888999987777554 233
Q ss_pred EEEEeecCCC-CCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEE----EEcCCccEEEEeCCCcc
Q 001279 637 VLFFTDDISG-SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII----VLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 637 ~~~~~~~~~~-h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~----s~s~Dg~v~v~d~~~g~ 703 (1108)
... .+.. ....|..+.+++ ++..|+ +.+..++|+.||..+|+
T Consensus 397 ~~~---~l~~~~~~~v~~~~~s~----------------------d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 397 PAG---AVSLPGIGSASGLSGRP----------------------GDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEE---ECBCSSSCEEEEEECCB----------------------TCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred cee---eccCCCCeEEEEeecCC----------------------CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 331 2222 356677787773 233344 33445899999998776
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.84 E-value=1.1e-07 Score=102.87 Aligned_cols=197 Identities=8% Similarity=0.027 Sum_probs=134.7
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeC-CCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~-~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
..+..++++++++++++.. ++.|.+|+.++....... .....+..+++.+++..+++...++.|.+||..+.......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence 4678899999999665555 899999998776554333 23357899999999887777777889999987655433222
Q ss_pred -cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 115 -~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.....+.+++++++++++++...++.|++|+.+. ...... .... ...+.++++.| +|..+
T Consensus 146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~--~~~~~~---~~~~------------~~~p~~i~~d~--~g~l~ 206 (270)
T 1rwi_B 146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES--NNQVVL---PFTD------------ITAPWGIAVDE--AGTVY 206 (270)
T ss_dssp CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT--CCEEEC---CCSS------------CCSEEEEEECT--TCCEE
T ss_pred cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC--CceEee---cccC------------CCCceEEEECC--CCCEE
Confidence 2234678899999998555555677777766542 222211 1111 14588999977 67645
Q ss_pred EEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCc
Q 001279 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1108)
Q Consensus 194 l~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~ 273 (1108)
++...++.|.+||..+......... ....+.++++. ++|..+++...++.
T Consensus 207 v~~~~~~~v~~~~~~~~~~~~~~~~-----------------------------~~~~p~~i~~~-~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 207 VTEHNTNQVVKLLAGSTTSTVLPFT-----------------------------GLNTPLAVAVD-SDRTVYVADRGNDR 256 (270)
T ss_dssp EEETTTSCEEEECTTCSCCEECCCC-----------------------------SCSCEEEEEEC-TTCCEEEEEGGGTE
T ss_pred EEECCCCcEEEEcCCCCcceeeccC-----------------------------CCCCceeEEEC-CCCCEEEEECCCCE
Confidence 5555678899999876543321100 02457888865 99998888889999
Q ss_pred EEEEecCCC
Q 001279 274 ILLWNTSTT 282 (1108)
Q Consensus 274 I~lWd~~~~ 282 (1108)
|++++....
T Consensus 257 v~~~~~~~~ 265 (270)
T 1rwi_B 257 VVKLTSLEH 265 (270)
T ss_dssp EEEECCCGG
T ss_pred EEEEcCCCc
Confidence 999998754
No 203
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.79 E-value=1.4e-06 Score=97.65 Aligned_cols=193 Identities=8% Similarity=-0.038 Sum_probs=131.5
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeeeee
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~~~ 114 (1108)
..+..++++ .+++.++...++.|.+||..+.+.+...+.......++|++++ .|+.+. .++.|.+||..++++...+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEE
Confidence 446677775 3455555566799999999876665333445678999999997 555555 7899999999999888766
Q ss_pred cCCC------CeeEEEEecCCCEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 115 KWES------NITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 115 ~~~~------~Itsl~~~~~~~~l~vg~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
.... ....+++ ++..+++++ .++.|.+++.. .+++... ++.. ..+..+.+.|
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~--t~~~~~~---i~~g-------------~~p~~i~~~~ 181 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTE--TDKVVDE---LTIG-------------IQPTSLVMDK 181 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETT--TTEEEEE---EECS-------------SCBCCCEECT
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECC--CCeEEEE---EEcC-------------CCccceEEcC
Confidence 5443 5667777 466677776 37777776654 3555532 3211 2356677876
Q ss_pred CCCCCEEEEEECC----------CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 187 NSSGNRVLIAYEN----------ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 187 ~~~~~~ll~~~~d----------g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
+|.+++++..+ +.|.+||..++++...... . . ......++
T Consensus 182 --dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~---------~---~----------------g~~p~~la 231 (328)
T 3dsm_A 182 --YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF---------K---L----------------GDWPSEVQ 231 (328)
T ss_dssp --TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC---------C---T----------------TCCCEEEE
T ss_pred --CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec---------C---C----------------CCCceeEE
Confidence 67744444444 7899999999887654321 0 0 12467788
Q ss_pred eecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 257 WASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
+ +|+++.|+++.. .|.+||..+++
T Consensus 232 ~-~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 232 L-NGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp E-CTTSCEEEEESS--SEEEEETTCSS
T ss_pred E-ecCCCEEEEEcc--EEEEEECCCCc
Confidence 6 499999988754 89999997764
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.78 E-value=1.3e-06 Score=98.57 Aligned_cols=148 Identities=9% Similarity=0.051 Sum_probs=105.9
Q ss_pred EEEcCCCCEEEEEEC-----CCcEEEEecCCcceEE-eCCCCCCEEEEEEeeCCCEEEEEe----------CCCcEEEEE
Q 001279 41 LAFDHIQRLLAIATL-----DGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISIT----------NDNEIQVWS 104 (1108)
Q Consensus 41 la~sp~~~~LA~Gs~-----dG~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s----------~d~~I~vWd 104 (1108)
....|+++.+.+... ++.|.++|..+.+++- +.....| . +.++||+++|+.++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445799999988876 6899999998777663 2223445 3 99999999888776 367899999
Q ss_pred cCCCeeeeeecCC--------CCeeEEEEecCCCEEEEEeC--CCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001279 105 LESRSLACCLKWE--------SNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 105 ~~s~~~~~~~~~~--------~~Itsl~~~~~~~~l~vg~~--dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
..+++.+..+... .....++++|++++++++.. ++.|.|+|.. .+++... |+.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~--t~~vv~t---I~v------------ 178 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE--GKAFKRM---LDV------------ 178 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT--TTEEEEE---EEC------------
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC--CCcEEEE---EEC------------
Confidence 9999988877432 24667999999999999974 5778777655 4566543 331
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC-CeE
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQI 212 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~-~~~ 212 (1108)
.... ...|. ....+++.+.||.+.+.++.. +++
T Consensus 179 --~g~~--~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 179 --PDCY--HIFPT-APDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp --CSEE--EEEEE-ETTEEEEEETTSCEEEEECCSSSCC
T ss_pred --CCcc--eeecC-CCceeEEECCCCCEEEEECCCCCeE
Confidence 1111 12243 234577889999999999876 555
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.77 E-value=6.9e-07 Score=103.38 Aligned_cols=216 Identities=14% Similarity=0.063 Sum_probs=135.6
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC--cEEEEEcCCCeeeeee
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN--EIQVWSLESRSLACCL 114 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~--~I~vWd~~s~~~~~~~ 114 (1108)
.+..|+++|+++++++...+++|++|+.++..+........... ++|++++.+|+.+..++ .|.+||..++.....+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 57789999999988888888999999998665543332222223 99999999999998765 7999998766543333
Q ss_pred ----c-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 115 ----K-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 115 ----~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
. ....+.+++++|+...|+++..++.|+.|+.+. +.... +..... .+ .....+...++|+|. +
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~--~~~~~----~~~~~~---~g--~~~~~P~~~ia~~p~-~ 278 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT--QEVTL----IKQLEL---SG--SLGTNPGPYLIYYFV-D 278 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT--CCEEE----EEECCC---CS--CCCCSSCCEEEEETT-T
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC--CCEEE----Eecccc---cC--CCCCCccccEEEeCC-C
Confidence 2 345678999999777788888888676666543 33221 100000 00 000011128999884 3
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
+.++++-..++.|..||.... ...+.++. .. .+.++. ......-.....+++. ++|..+++-+
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~-------------~~-~g~~dg-~~~~~~~~~P~gia~d-~dG~lyvad~ 341 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGE-CEWFCGSA-------------TQ-KTVQDG-LREEALFAQPNGMTVD-EDGNFYIVDG 341 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCC-EEEEEECT-------------TC-CSCBCE-EGGGCBCSSEEEEEEC-TTCCEEEEET
T ss_pred CEEEEEeCCCCEEEEEecCCC-EEEEEeCC-------------CC-CCcCCC-cccccEeCCCeEEEEe-CCCCEEEEeC
Confidence 554455556789999998765 33333331 00 000000 0000012356789965 9999777777
Q ss_pred -ccCcEEEEecCCC
Q 001279 270 -IDGDILLWNTSTT 282 (1108)
Q Consensus 270 -~DG~I~lWd~~~~ 282 (1108)
.++.|+.|+..++
T Consensus 342 ~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 342 FKGYCLRKLDILDG 355 (409)
T ss_dssp TTTCEEEEEETTTT
T ss_pred CCCCEEEEEECCCC
Confidence 7899999997655
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.77 E-value=5.8e-08 Score=110.05 Aligned_cols=143 Identities=10% Similarity=0.096 Sum_probs=108.9
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe-----------eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEE
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRS-----------LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~-----------~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~ 146 (1108)
++..|++++..+.+++++.+ .+.||++...+ ......++. |++++| ++++|+++ .+|.|++|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 79999999999999999876 66669975443 123345667 999999 89999999 8899999998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCccccccc
Q 001279 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDG 226 (1108)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~ 226 (1108)
......- .++.+. .++.++.+.+. + ++++..||.|.+||+.++.....
T Consensus 114 ~sl~~~~-----~~~~~~------------~~v~~i~~~~p---~-~av~~~dG~L~v~dl~~~~~~~~----------- 161 (388)
T 1xip_A 114 EELSEFR-----TVTSFE------------KPVFQLKNVNN---T-LVILNSVNDLSALDLRTKSTKQL----------- 161 (388)
T ss_dssp SSTTCEE-----EEEECS------------SCEEEEEECSS---E-EEEEETTSEEEEEETTTCCEEEE-----------
T ss_pred hhhhccC-----ccceee------------cceeeEEecCC---C-EEEEECCCCEEEEEccCCccccc-----------
Confidence 7532111 122222 44777777542 2 89999999999999998765432
Q ss_pred ccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
...|+|+||. |+| ++.|..||++++|+....
T Consensus 162 ----------------------~~~Vs~v~WS-pkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 162 ----------------------AQNVTSFDVT-NSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp ----------------------EESEEEEEEC-SSE--EEEEETTSCEEEEEEETT
T ss_pred ----------------------cCCceEEEEc-CCc--eEEEEcCCcEEEEcCCCc
Confidence 4479999996 999 788999999999987654
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.75 E-value=9.8e-07 Score=97.34 Aligned_cols=196 Identities=11% Similarity=0.128 Sum_probs=129.2
Q ss_pred eeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCC-----CCCCEEEEEEeeCCCEEEEEeCC--------
Q 001279 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-----SQLPYKNLEFLQNQGFLISITND-------- 97 (1108)
Q Consensus 31 ~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~-----h~~~V~~l~fs~d~~~L~S~s~d-------- 97 (1108)
.+..+..+.+++++|++++++ +. ++.|.+|+.++.+...+.. ....+..+++.++|.++++....
T Consensus 49 ~~~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~ 126 (297)
T 3g4e_A 49 RVTMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLE 126 (297)
T ss_dssp EEECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCC
T ss_pred EEeCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccccccc
Confidence 345678899999999999554 44 5689999987654432221 12357899999998877655332
Q ss_pred -CcEEEEEcCC-CeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeee--ceeecccccccccCCC
Q 001279 98 -NEIQVWSLES-RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQL--PYNISADALSEKAGFP 172 (1108)
Q Consensus 98 -~~I~vWd~~s-~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~--~~~i~~~~~~~~~~~~ 172 (1108)
..-.||.+.. ++.............++|+|++++|++.. .++.|++|+++..++.+... -+.+....
T Consensus 127 ~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-------- 198 (297)
T 3g4e_A 127 RHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE-------- 198 (297)
T ss_dssp TTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG--------
T ss_pred CCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC--------
Confidence 3346666553 33333333334568899999999887665 46778888886555655321 01222111
Q ss_pred CCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCce
Q 001279 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1108)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 252 (1108)
..+.++++.+ +|.+.++.+..+.|.+||.++++++..... + ...+
T Consensus 199 ----~~p~g~~~d~--~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---------p--------------------~~~~ 243 (297)
T 3g4e_A 199 ----QIPDGMCIDA--EGKLWVACYNGGRVIRLDPVTGKRLQTVKL---------P--------------------VDKT 243 (297)
T ss_dssp ----CEEEEEEEBT--TSCEEEEEETTTEEEEECTTTCCEEEEEEC---------S--------------------SSBE
T ss_pred ----CCCCeeEECC--CCCEEEEEcCCCEEEEEcCCCceEEEEEEC---------C--------------------CCCc
Confidence 4578889966 787566666778899999998876554321 0 4578
Q ss_pred eEEEeecCCCCEEEEEEcc
Q 001279 253 SALCWASSSGSILAVGYID 271 (1108)
Q Consensus 253 tsl~w~spdg~~l~sg~~D 271 (1108)
++++|..|+++.|+..+..
T Consensus 244 t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 244 TSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEESGGGCEEEEEEBC
T ss_pred eEEEEeCCCCCEEEEEcCC
Confidence 9999765888887776653
No 208
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.72 E-value=1.8e-05 Score=90.21 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=88.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCC----------CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWE----------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~----------~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~ 157 (1108)
+..|+.++.++.|..+|..+++.+...... ..+.+ ....++..+++++.++.|+. ++..++++.-.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a--~d~~tG~~~W~- 128 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYA--LNTSDGTVAWQ- 128 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEE--EETTTCCEEEE-
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEE--EECCCCCEEEE-
Confidence 567888888999999999999988776542 22322 22334678889999996655 45555666521
Q ss_pred eeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCC
Q 001279 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1108)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1108)
+.+... + ...|...+..+++++.++.|..+|..+++.++..........
T Consensus 129 ~~~~~~---------------~---~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~------------- 177 (376)
T 3q7m_A 129 TKVAGE---------------A---LSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS------------- 177 (376)
T ss_dssp EECSSC---------------C---CSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------------
T ss_pred EeCCCc---------------e---EcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-------------
Confidence 222211 0 001111234588999999999999999988776533100000
Q ss_pred cccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 238 FLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 238 ~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
.....+.+ . .+..++.+..+|.|..+|..++
T Consensus 178 -----------~~~~~~~~-~--~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 178 -----------LRGESAPT-T--AFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp ------------CCCCCCE-E--ETTEEEECCTTTEEEEEETTTC
T ss_pred -----------ecCCCCcE-E--ECCEEEEEcCCCEEEEEECCCC
Confidence 00001112 1 2456778888899999988655
No 209
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.70 E-value=4.3e-07 Score=101.85 Aligned_cols=198 Identities=11% Similarity=0.007 Sum_probs=130.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEE-eCCCC-----CCEEEEEEeeCCCEEEEEe--CCCcEEEEE
Q 001279 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL-ISPSQ-----LPYKNLEFLQNQGFLISIT--NDNEIQVWS 104 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~-~~~h~-----~~V~~l~fs~d~~~L~S~s--~d~~I~vWd 104 (1108)
.....+..+++++++++.++...++.|.+||..+.++.. ..... .....|++ . +++|+.++ .++.|.+||
T Consensus 81 ~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKID 158 (328)
T ss_dssp ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEE
T ss_pred CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEE
Confidence 345678899999998554444488999999997766542 22111 13456667 3 45555555 488999999
Q ss_pred cCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCC----------CcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001279 105 LESRSLACCLKWESNITAFSVISGSHFMYIGDEN----------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 105 ~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~d----------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
+.+++++..+........+.+++++++++++..+ +.|++++ ...+++... +.++.
T Consensus 159 ~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id--~~t~~v~~~-~~~~~------------ 223 (328)
T 3dsm_A 159 TETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID--AETFTVEKQ-FKFKL------------ 223 (328)
T ss_dssp TTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE--TTTTEEEEE-EECCT------------
T ss_pred CCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE--CCCCeEEEE-EecCC------------
Confidence 9999988887666667889999999866665544 5565555 444565532 22221
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeE
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vts 254 (1108)
...+..++++| ++.+|+++.. .|.+||..++++.... . . . .......+
T Consensus 224 -g~~p~~la~~~--d~~~lyv~~~--~v~~~d~~t~~~~~~~-~----~----~------------------~~~~~p~g 271 (328)
T 3dsm_A 224 -GDWPSEVQLNG--TRDTLYWINN--DIWRMPVEADRVPVRP-F----L----E------------------FRDTKYYG 271 (328)
T ss_dssp -TCCCEEEEECT--TSCEEEEESS--SEEEEETTCSSCCSSC-S----B----C------------------CCSSCEEE
T ss_pred -CCCceeEEEec--CCCEEEEEcc--EEEEEECCCCceeeee-e----e----c------------------CCCCceEE
Confidence 03589999988 6777777655 8889999887652110 0 0 0 00245677
Q ss_pred EEeecC-CCCEEEEE----EccCcEEEEecC
Q 001279 255 LCWASS-SGSILAVG----YIDGDILLWNTS 280 (1108)
Q Consensus 255 l~w~sp-dg~~l~sg----~~DG~I~lWd~~ 280 (1108)
+++. | ++...++. ..+|.|.+||..
T Consensus 272 i~vd-p~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 272 LTVN-PNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEC-TTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEc-CCCCeEEEEcccccccCCEEEEECCC
Confidence 8864 7 55555555 578999999986
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.70 E-value=3.3e-06 Score=96.20 Aligned_cols=204 Identities=11% Similarity=-0.032 Sum_probs=124.3
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEecCCcceEEe--CC---C---CCCEEEEEEeeCCCEEEEEeC--CCc
Q 001279 40 ILAFDHIQRLLAIAT----------LDGRIKVIGGDGIEGLLI--SP---S---QLPYKNLEFLQNQGFLISITN--DNE 99 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs----------~dG~I~iw~~~~~~~~~~--~~---h---~~~V~~l~fs~d~~~L~S~s~--d~~ 99 (1108)
.++|+||+++|.++. .++.|.+||....+.+-. .+ + ...-..+.|+|||++|+.++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999986 367899999976555421 11 0 122348999999999998874 578
Q ss_pred EEEEEcCCCeeeee-ecCCCCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeee----------------c----
Q 001279 100 IQVWSLESRSLACC-LKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQL----------------P---- 157 (1108)
Q Consensus 100 I~vWd~~s~~~~~~-~~~~~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~----------------~---- 157 (1108)
|.++| .+++++.. +..... +.+.+.+ ..+++.+.||.+.+++. . ++.... +
T Consensus 150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~--g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-A--GGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-C--CcEEEEEeccccccCCcceeecceeEe
Confidence 99999 99988877 654432 2333333 22333444555444443 1 111100 0
Q ss_pred --------------eeecc--cc--cccccC-------CCCCCCCCeEEEecccCCCCCEEEEEEC----------CCeE
Q 001279 158 --------------YNISA--DA--LSEKAG-------FPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALV 202 (1108)
Q Consensus 158 --------------~~i~~--~~--~~~~~~-------~~~~~~~~V~~v~f~P~~~~~~ll~~~~----------dg~V 202 (1108)
+.+.. .. ....+. .....+.....+.++| ++.+++++.. ++.|
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~--d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK--SSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC--CCCEEEEEeccCCcccccCCCCeE
Confidence 00000 00 000000 0000112234467777 6777887654 3579
Q ss_pred EEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEEEEE-ccCcEEEEecC
Q 001279 203 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTS 280 (1108)
Q Consensus 203 ~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~-~DG~I~lWd~~ 280 (1108)
.++|..+.+++..... .....++.| +|||+ .++++. .+++|.+||..
T Consensus 301 ~VID~~t~~vv~~i~~------------------------------g~~p~~i~~-s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL------------------------------GHDVDAISV-AQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEECCCCEEEEEEEC------------------------------CCCcCeEEE-CCCCCeEEEEEcCCCCeEEEEECC
Confidence 9999999988655422 234667886 59999 777776 58999999998
Q ss_pred CCC
Q 001279 281 TTA 283 (1108)
Q Consensus 281 ~~~ 283 (1108)
+.+
T Consensus 350 t~~ 352 (373)
T 2mad_H 350 AGD 352 (373)
T ss_pred CCC
Confidence 764
No 211
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.67 E-value=1.9e-06 Score=93.89 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=132.7
Q ss_pred eeeeeCCC--CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCC-CCCCEEEEEEeeCCCEEEEEeC-CCcEEEE
Q 001279 28 IAVHYGIP--ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITN-DNEIQVW 103 (1108)
Q Consensus 28 ~~~~~G~~--~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~L~S~s~-d~~I~vW 103 (1108)
....+..+ ..+.+++++|+|++|+ +.++.|+.||.++..+-.... +...+..+.+.+||..|++.+. ++.|..+
T Consensus 27 ~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~v 104 (276)
T 3no2_A 27 IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEV 104 (276)
T ss_dssp EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEE
T ss_pred EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEE
Confidence 44555444 3688999999999998 457889999996554433333 3457889999999999999887 7778888
Q ss_pred EcCCCeeeeeecCC-------CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001279 104 SLESRSLACCLKWE-------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1108)
Q Consensus 104 d~~s~~~~~~~~~~-------~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1108)
|. +++.+..+... .....+++.++++++++...++.|.+|+. . +++... |..+
T Consensus 105 d~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~--~-G~~~w~-~~~~--------------- 164 (276)
T 3no2_A 105 NM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP--N-GQLLNS-VKLS--------------- 164 (276)
T ss_dssp CT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT--T-SCEEEE-EECS---------------
T ss_pred eC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC--C-CCEEEE-EECC---------------
Confidence 86 56666554321 23455678899999999999997766654 3 666532 2222
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
..+.++...| ++..+++++.++.|..||..+++.++.+...+..- .....+++++
T Consensus 165 ~~~~~~~~~~--~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~-----------------------~~l~~~~~~~ 219 (276)
T 3no2_A 165 GTPFSSAFLD--NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG-----------------------VQLFFVAQLF 219 (276)
T ss_dssp SCCCEEEECT--TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS-----------------------CCCSEEEEEE
T ss_pred CCccceeEcC--CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC-----------------------ccccccccce
Confidence 2345566655 68867777777899999999999887764311100 0023466777
Q ss_pred eecCCCCEEEEEE
Q 001279 257 WASSSGSILAVGY 269 (1108)
Q Consensus 257 w~spdg~~l~sg~ 269 (1108)
.. ++|..+++.+
T Consensus 220 ~~-~~G~i~v~~~ 231 (276)
T 3no2_A 220 PL-QNGGLYICNW 231 (276)
T ss_dssp EC-TTSCEEEEEE
T ss_pred Ec-CCCCEEEEec
Confidence 54 8888777764
No 212
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.65 E-value=0.0038 Score=78.67 Aligned_cols=198 Identities=15% Similarity=0.144 Sum_probs=117.5
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCC----CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL----PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~----~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~ 111 (1108)
..|.+|..+++|.+. +|+.+| +..||.............. .|.++...+++...+. +. +-|..||..+++..
T Consensus 88 n~I~~i~~d~~g~lW-igT~~G-l~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~ 163 (795)
T 4a2l_A 88 DISRIVKTDSQGRVW-IGTRDG-LSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLIS-TP-EGLIMFDIKESKFI 163 (795)
T ss_dssp SCEEEEEECTTSCEE-EEESSC-EEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEE-ET-TEEEEEETTTTEEE
T ss_pred cceeEEEECCCCCEE-EEeCCc-hheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEE-EC-CceEEEECCCCEEE
Confidence 458899999998876 567666 7899986554433322111 2888988888655554 43 56999998877653
Q ss_pred eeec-C-CCC-eeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 112 CCLK-W-ESN-ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 112 ~~~~-~-~~~-Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
.... . ... |.++..++++. +.+|+.++.+..++ ...+++... .... ....|.++...+
T Consensus 164 ~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~--~~~~~~~~~--~~~~------------~~~~i~~i~~d~-- 224 (795)
T 4a2l_A 164 DDSFSTAMHKTIASTLYRQGDQ-IYIGTSTDGLYTYS--ITQKTFEKV--IPIL------------GTKQIQAILQQS-- 224 (795)
T ss_dssp CSSSCHHHHTCCEEEEEEETTE-EEEEESSSCEEEEE--TTTCCEEEC--C----------------CCCEEEEEEEE--
T ss_pred eccCCCCCCcceEEEEECCCCC-EEEEECCCCEEEEe--CCCCeEEEe--cCCC------------CCCeeEEEEEcC--
Confidence 3211 1 123 88888887775 55566654355544 333444321 0000 114588888754
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 189 ~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
++. |.+++.++-+.+||..+++...+... ...+. ......|.+++.. ++|. |..|
T Consensus 225 ~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~-------------~~~~~---------~l~~~~i~~i~~d-~~g~-lWig 279 (795)
T 4a2l_A 225 PTR-IWVATEGAGLFLINPKTKEIKNYLHS-------------PSNPK---------SISSNYIRSLAMD-SQNR-LWIG 279 (795)
T ss_dssp TTE-EEEEEBSSCEEEEETTTTEEEEECCC-------------TTCTT---------SCSCSBEEEEEEC-TTSC-EEEE
T ss_pred CCC-EEEEECCCCeEEEeCCCCeEEEeecC-------------CCCcc---------ccCCCeEEEEEEc-CCCC-EEEE
Confidence 565 77787654578899888776544211 00000 0014578898854 6776 4455
Q ss_pred EccCcEEEEecCCC
Q 001279 269 YIDGDILLWNTSTT 282 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1108)
+.+| |.+|+..+.
T Consensus 280 t~~G-l~~~~~~~~ 292 (795)
T 4a2l_A 280 TFND-LNIYHEGTD 292 (795)
T ss_dssp ESSC-EEEEETTTT
T ss_pred eCCh-hheEcCCCC
Confidence 5554 888887543
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.65 E-value=4.6e-06 Score=96.43 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=102.5
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~ 157 (1108)
....|+|++++..+++-..++.|++||..++.+........... ++|++++++|++++.++...||.++...+......
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 57899999998766666667899999999888776654444444 99999999999999876434555554332221110
Q ss_pred eeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCC
Q 001279 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1108)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1108)
-.+... ....+.+++++|. ++ .|+++..++.|..||..++....+.+.. . .+ .
T Consensus 211 g~~~~~-----------~~~~p~~iav~p~-~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~---~--------~g---~ 263 (409)
T 3hrp_A 211 GQLGST-----------FSGKIGAVALDET-EE-WLYFVDSNKNFGRFNVKTQEVTLIKQLE---L--------SG---S 263 (409)
T ss_dssp EECCTT-----------SCSCCCBCEECTT-SS-EEEEECTTCEEEEEETTTCCEEEEEECC---C--------CS---C
T ss_pred eeccch-----------hcCCcEEEEEeCC-CC-eEEEEECCCcEEEEECCCCCEEEEeccc---c--------cC---C
Confidence 001110 1145788899884 34 4777888899999999887654332110 0 00 0
Q ss_pred cccCcCCCCCCCCceeEEEeecCC-CCEEEEEEccCcEEEEecC
Q 001279 238 FLEGISEHQPEEKEISALCWASSS-GSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 238 ~~~~~~~~~~~~~~Vtsl~w~spd-g~~l~sg~~DG~I~lWd~~ 280 (1108)
.+ ..+...++|. |+ +..+++-..++.|+.|+..
T Consensus 264 ~~---------~~P~~~ia~~-p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 264 LG---------TNPGPYLIYY-FVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp CC---------CSSCCEEEEE-TTTTEEEEEETTTTEEEEECTT
T ss_pred CC---------CCccccEEEe-CCCCEEEEEeCCCCEEEEEecC
Confidence 00 1112378875 74 5555555567778888754
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.64 E-value=5.4e-06 Score=95.23 Aligned_cols=118 Identities=7% Similarity=-0.134 Sum_probs=80.1
Q ss_pred eCCCEEEEEeCC-----CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC----------CCcEEEEEEecCC
Q 001279 86 QNQGFLISITND-----NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDADE 150 (1108)
Q Consensus 86 ~d~~~L~S~s~d-----~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~----------dg~V~vw~~d~~~ 150 (1108)
+++.+++..... +.|.+.|..+++++..+.....- .++++|++++++++.. ++.|.++| ...
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD--~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD--PVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC--TTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEE--CCC
Confidence 466667666653 68999999999999888654444 8999999999999873 56666654 444
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC--CCeEEEEEccCCeEEEEe
Q 001279 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~lWdl~~~~~~~~~ 216 (1108)
.+.... ..+++... . ........+.|+| +|++++++.. ++.|.+.|+.+.+++...
T Consensus 159 ~~vv~~-I~v~g~~r---~----~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~I 216 (426)
T 3c75_H 159 FLPIAD-IELPDAPR---F----LVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRML 216 (426)
T ss_dssp CCEEEE-EEETTCCC---C----CBSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred CcEEEE-EECCCccc---c----ccCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence 555532 22221000 0 0002345678877 8988988874 578999999999886543
No 215
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.62 E-value=0.0034 Score=79.08 Aligned_cols=203 Identities=10% Similarity=0.095 Sum_probs=124.7
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEe--CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001279 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI--SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~--~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~ 115 (1108)
|.++..++++.+.+ |+.++.|..|+......... ..+...|.++...+++. |..++.++-|.+||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence 88899998887665 77765688898765544322 22356799998888765 4445545559999998876543321
Q ss_pred --------CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC
Q 001279 116 --------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1108)
Q Consensus 116 --------~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1108)
....|.++..++++. |.+|+.+| |.+++ ...+.+.. |...... ........|.++...+
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~G-l~~~~--~~~~~~~~--~~~~~~~------~~~l~~~~i~~i~~D~- 319 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNR-LWIGTFND-LNIYH--EGTDSFAS--YSSNPVE------NGSLSQRSVRSIFMDS- 319 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSC-EEEEESSC-EEEEE--TTTTEEEE--ECCCTTS------TTSCSSSCEEEEEECT-
T ss_pred CCCCccccCCCeEEEEEEcCCCC-EEEEeCCh-hheEc--CCCCeEEE--EecCCCC------CCCCCCCcEEEEEEeC-
Confidence 124699999888776 45566565 55554 43444442 1111000 0011225699998854
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEE
Q 001279 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1108)
Q Consensus 188 ~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1108)
+|. |.+|+.++-|..|+..+.....+... .. .. ......|.+++.. ++|. |..
T Consensus 320 -~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-------------~~-~~---------~l~~~~V~~i~~d-~~g~-lWi 372 (795)
T 4a2l_A 320 -QGG-MWLGTYFGGLNYYHPIRNRFKNIRNI-------------PY-KN---------SLSDNVVSCIVED-KDKN-LWI 372 (795)
T ss_dssp -TSC-EEEEESSSCEEEECGGGGSSEEECCC-------------TT-SS---------SCSCSSEEEEEEC-TTSC-EEE
T ss_pred -CcC-EEEEECCCCeEEeCCCcccceEEcCC-------------CC-CC---------CCCCCeeEEEEEC-CCCC-EEE
Confidence 677 88898887788898877654333211 00 00 0015578999854 6665 666
Q ss_pred EEccCcEEEEecCCC
Q 001279 268 GYIDGDILLWNTSTT 282 (1108)
Q Consensus 268 g~~DG~I~lWd~~~~ 282 (1108)
|+.+|-|..|+..+.
T Consensus 373 Gt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 373 GTNDGGLNLYNPITQ 387 (795)
T ss_dssp EESSSCEEEECTTTC
T ss_pred EECCCCeEEEcCCCC
Confidence 888877999987643
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.61 E-value=4.3e-06 Score=92.48 Aligned_cols=202 Identities=9% Similarity=-0.004 Sum_probs=130.9
Q ss_pred CCCCceEEEEcCC-CCEEEEEECCCcEEEEecCCcceEEe-CC-----CCCCEEEEEEeeCCCEEEEEeCC---------
Q 001279 34 IPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLI-SP-----SQLPYKNLEFLQNQGFLISITND--------- 97 (1108)
Q Consensus 34 ~~~~is~la~sp~-~~~LA~Gs~dG~I~iw~~~~~~~~~~-~~-----h~~~V~~l~fs~d~~~L~S~s~d--------- 97 (1108)
+...+..++++++ +++++ ++.++.|.+|+.+ .+.... .. ....+..+++.+++..+++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4467889999999 66554 4445579999988 444333 21 12358899999998877776554
Q ss_pred ------CcEEEEEcCCCeeeeeecCCCCeeEEEEe----cCCCEEEEEe-CCCcEEEEEEecCCCeeeee--ceeecccc
Q 001279 98 ------NEIQVWSLESRSLACCLKWESNITAFSVI----SGSHFMYIGD-ENGLMSVIKYDADEGKLFQL--PYNISADA 164 (1108)
Q Consensus 98 ------~~I~vWd~~s~~~~~~~~~~~~Itsl~~~----~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~--~~~i~~~~ 164 (1108)
+.|..||.. ++.............++++ +++++++++. .++.|++|+++. .+.+... -..++.+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-PAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-TTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-CCccccceEEEECCCCC
Confidence 467777765 5544433334456889999 9998777765 578888888762 2333211 01122110
Q ss_pred cccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCC
Q 001279 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1108)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1108)
...+.++++.| +|..+++...++.|.+||..+++....... .
T Consensus 225 -----------~~~p~~i~~d~--~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~---------~---------------- 266 (314)
T 1pjx_A 225 -----------EGGADGMDFDE--DNNLLVANWGSSHIEVFGPDGGQPKMRIRC---------P---------------- 266 (314)
T ss_dssp -----------SCEEEEEEEBT--TCCEEEEEETTTEEEEECTTCBSCSEEEEC---------S----------------
T ss_pred -----------CCCCCceEECC--CCCEEEEEcCCCEEEEEcCCCCcEeEEEeC---------C----------------
Confidence 03477889977 687566666889999999986554322211 0
Q ss_pred CCCCCCceeEEEeecCCCCEEEEE-EccCcEEEEecCCC
Q 001279 245 HQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTSTT 282 (1108)
Q Consensus 245 ~~~~~~~Vtsl~w~spdg~~l~sg-~~DG~I~lWd~~~~ 282 (1108)
...++++++ +++|+.|+++ ..++.|..|+....
T Consensus 267 ----~~~~~~i~~-~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 267 ----FEKPSNLHF-KPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ----SSCEEEEEE-CTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ----CCCceeEEE-CCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 356888997 5999966555 45688999998643
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.60 E-value=6.3e-06 Score=90.76 Aligned_cols=198 Identities=11% Similarity=0.063 Sum_probs=130.1
Q ss_pred ceEEEEcCC-CCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC
Q 001279 38 ASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1108)
Q Consensus 38 is~la~sp~-~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~ 116 (1108)
....+|+|+ +.++++...+++|+.|+.++..... ......+.+++|++++.++++ . ++.|.+||..+++.......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEEC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEec
Confidence 457889995 5577777788999999997655432 234568999999999885554 3 67899999998876443322
Q ss_pred -----CCCeeEEEEecCCCEEEEEeC---------CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001279 117 -----ESNITAFSVISGSHFMYIGDE---------NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1108)
Q Consensus 117 -----~~~Itsl~~~~~~~~l~vg~~---------dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1108)
...+..+++++++++.++... .....||.++.. +++... .... .....+
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~----~~~~------------~~pngi 154 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKY----FDQV------------DISNGL 154 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEE----EEEE------------SBEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEE----eecc------------ccccce
Confidence 235788999999985554422 234577888764 333321 1111 347889
Q ss_pred ecccCCCCCEEEE-EECCCeEEEEEc--cCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeec
Q 001279 183 LPHPNSSGNRVLI-AYENALVILWDV--SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1108)
Q Consensus 183 ~f~P~~~~~~ll~-~~~dg~V~lWdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1108)
+|+| +++.|++ .+.++.|.+||+ .++.+........ .. ........+++.
T Consensus 155 ~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~----------------------~~~~~p~g~~~d- 207 (297)
T 3g4e_A 155 DWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--LE----------------------KEEQIPDGMCID- 207 (297)
T ss_dssp EECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--CC----------------------GGGCEEEEEEEB-
T ss_pred EEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--CC----------------------CCCCCCCeeEEC-
Confidence 9988 6765654 455789999997 4554321110000 00 002456678854
Q ss_pred CCCCEEEEEEccCcEEEEecCCC
Q 001279 260 SSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
++|...++...++.|..||..++
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTC
T ss_pred CCCCEEEEEcCCCEEEEEcCCCc
Confidence 89988888788889999998765
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.54 E-value=1.2e-05 Score=89.84 Aligned_cols=193 Identities=12% Similarity=-0.008 Sum_probs=119.5
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCC-----CCCEEEEEEeeCCCEEEEEeCC------CcE
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS-----QLPYKNLEFLQNQGFLISITND------NEI 100 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h-----~~~V~~l~fs~d~~~L~S~s~d------~~I 100 (1108)
+..+..+.+++++|+++++++. .+ .|.+|+..+.+....... ...+..+.++++|.++++...+ +.|
T Consensus 86 ~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 86 HALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp EECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred EECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 3456789999999999887654 44 499999865554322221 2358899999998876655422 345
Q ss_pred EEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCC-eeee--eceeecccccccccCCCCCCC
Q 001279 101 QVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEG-KLFQ--LPYNISADALSEKAGFPLLSH 176 (1108)
Q Consensus 101 ~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~-~l~~--~~~~i~~~~~~~~~~~~~~~~ 176 (1108)
..+| +++.............++|++++++++++. .++.|++|+++...+ .+.. .-..+... .
T Consensus 164 ~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~------------~ 229 (326)
T 2ghs_A 164 YHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI------------K 229 (326)
T ss_dssp EEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS------------S
T ss_pred EEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC------------C
Confidence 5555 555443333334577899999999887765 467777777652234 3211 00111111 1
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
..+.++++.+ +|.+.++...++.|.+||.. ++.+..... . ...+++++
T Consensus 230 ~~p~gi~~d~--~G~lwva~~~~~~v~~~d~~-g~~~~~i~~---------~--------------------~~~~~~~a 277 (326)
T 2ghs_A 230 GGMDGSVCDA--EGHIWNARWGEGAVDRYDTD-GNHIARYEV---------P--------------------GKQTTCPA 277 (326)
T ss_dssp SEEEEEEECT--TSCEEEEEETTTEEEEECTT-CCEEEEEEC---------S--------------------CSBEEEEE
T ss_pred CCCCeeEECC--CCCEEEEEeCCCEEEEECCC-CCEEEEEEC---------C--------------------CCCcEEEE
Confidence 3467888865 78755555667889999984 444332211 0 44688999
Q ss_pred eecCCCCEEEEEEccC
Q 001279 257 WASSSGSILAVGYIDG 272 (1108)
Q Consensus 257 w~spdg~~l~sg~~DG 272 (1108)
|..+++..|++++..+
T Consensus 278 f~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 278 FIGPDASRLLVTSARE 293 (326)
T ss_dssp EESTTSCEEEEEEBCT
T ss_pred EecCCCCEEEEEecCC
Confidence 7548888776665543
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.52 E-value=4.1e-05 Score=94.38 Aligned_cols=111 Identities=11% Similarity=0.139 Sum_probs=69.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCC----------e--eEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWESN----------I--TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~----------I--tsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~ 155 (1108)
+..|+.++.++.|..+|..+++.+..+..... + ..+++ .+..+++++.++.|+. +|..+|++.-
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~a--lD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIA--LDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEE--EETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEE--EECCCCCEEe
Confidence 46788888889999999999999988754321 1 12222 4678999999996655 5555577663
Q ss_pred eceeeccc-ccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC------CCeEEEEEccCCeEEEEe
Q 001279 156 LPYNISAD-ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 156 ~~~~i~~~-~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~lWdl~~~~~~~~~ 216 (1108)
++... .... ...+...|.-.+.+++++.. +|.|..||..+++.++.+
T Consensus 153 ---~~~~~~~~~~-----------~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 153 ---HQNTFEGQKG-----------SLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp ---EEETTTTCCS-----------SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ---eecCCcCcCc-----------CcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 23321 1000 00011111112334666654 799999999999988765
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.52 E-value=2.5e-05 Score=87.28 Aligned_cols=192 Identities=11% Similarity=0.050 Sum_probs=126.0
Q ss_pred ceEEEEcCC-CCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC
Q 001279 38 ASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1108)
Q Consensus 38 is~la~sp~-~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~ 116 (1108)
....+|+|+ +.++.++..++.|.+|+.++.+.... .....+.++.|++++.++++. ++.|.+||..+++.......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeC
Confidence 467899997 55667777789999999977654432 234679999999998776654 44599999988876433322
Q ss_pred -----CCCeeEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC
Q 001279 117 -----ESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1108)
Q Consensus 117 -----~~~Itsl~~~~~~~~l~vg~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1108)
...+..+++++++++.++...+ +...||.++ ++++... .... ....+++|+|
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~----~~~~------------~~~~~i~~s~- 188 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL----FADI------------SIPNSICFSP- 188 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE----EEEE------------SSEEEEEECT-
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe----eCCC------------cccCCeEEcC-
Confidence 1358899999999865544321 345677777 3555431 1111 3467899988
Q ss_pred CCCCEEEEE-ECCCeEEEEEcc--CC-eEE---EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 188 SSGNRVLIA-YENALVILWDVS--EA-QII---FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 188 ~~~~~ll~~-~~dg~V~lWdl~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
+++.++++ ..++.|.+||+. ++ .+. .+... . .....+.++++. +
T Consensus 189 -dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-------------~--------------~~~~~p~gi~~d-~ 239 (326)
T 2ghs_A 189 -DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS-------------T--------------GIKGGMDGSVCD-A 239 (326)
T ss_dssp -TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC-------------T--------------TSSSEEEEEEEC-T
T ss_pred -CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC-------------C--------------CCCCCCCeeEEC-C
Confidence 67766555 456899999986 44 210 01000 0 002345677864 8
Q ss_pred CCCEEEEEEccCcEEEEecC
Q 001279 261 SGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~ 280 (1108)
+|.+.++...++.|..|+..
T Consensus 240 ~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 240 EGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TSCEEEEEETTTEEEEECTT
T ss_pred CCCEEEEEeCCCEEEEECCC
Confidence 89877777777889999873
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.51 E-value=7.9e-05 Score=84.85 Aligned_cols=171 Identities=12% Similarity=0.120 Sum_probs=103.7
Q ss_pred ccceeeeeeCCCCCce------EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCC----------CCCEEEEEEeeC
Q 001279 24 LNLRIAVHYGIPATAS------ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS----------QLPYKNLEFLQN 87 (1108)
Q Consensus 24 ~~~~~~~~~G~~~~is------~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h----------~~~V~~l~fs~d 87 (1108)
.+++....+.++..+. ..++ ++..|.+++.+|.|..||..+.+.+..... ...+... ...+
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v--~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPAL--ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVS 102 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEE
T ss_pred CcceEEeEEecCCCccccceeeccEE--ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEe
Confidence 4567777776553321 2222 367888899999999999975555422221 2233322 2234
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1108)
+..|+.++.++.|..+|..+++.+........+.+.-.. .+..+++++.+|.|+. ++..+++.... +.....
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~--~d~~tG~~~W~-~~~~~~---- 174 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQA--LNEADGAVKWT-VNLDMP---- 174 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEE--EETTTCCEEEE-EECCC-----
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEE--EECCCCcEEEE-EeCCCC----
Confidence 567888889999999999999988777554433221111 2458888999996654 55555665532 222110
Q ss_pred ccCCCCCCCCCeEEE--ecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 168 KAGFPLLSHQPVVGV--LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v--~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
+..+ ...|...+..+++++.++.|..+|..+++.++..
T Consensus 175 -----------~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~ 214 (376)
T 3q7m_A 175 -----------SLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQ 214 (376)
T ss_dssp ---------------CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEE
T ss_pred -----------ceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 0000 0111112345888899999999999999887665
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.46 E-value=5.5e-06 Score=91.60 Aligned_cols=191 Identities=11% Similarity=0.043 Sum_probs=122.5
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCC----CCCEEEEEEeeCCCEEEE----EeC---------
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS----QLPYKNLEFLQNQGFLIS----ITN--------- 96 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h----~~~V~~l~fs~d~~~L~S----~s~--------- 96 (1108)
....+..++++++|+++++...++.|.+|+.++....+.... ...+..+.+.++|...++ ++.
T Consensus 84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp SCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred CCCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 345678999999999776655568899999874422222111 124678999999987776 221
Q ss_pred ----CCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCC------CcEEEEEEecCCCeeeeeceeecccccc
Q 001279 97 ----DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDEN------GLMSVIKYDADEGKLFQLPYNISADALS 166 (1108)
Q Consensus 97 ----d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~d------g~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1108)
.+.|..||..+++..... .......++|+|++++|++++.. +.|++|+++.. .+... ..+...
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~--~l~~~-~~~~~~--- 236 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG--ALHDR-RHFASV--- 236 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT--EEEEE-EEEECC---
T ss_pred cccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC--CccCC-eEEEEC---
Confidence 245788887777654443 33457889999999999988775 66777777642 22211 111000
Q ss_pred cccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCC
Q 001279 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1108)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1108)
....+.++++.+ +|+ |.++..+| |.+||........+..
T Consensus 237 --------~~~~pdgi~~d~--~G~-lwv~~~~g-v~~~~~~g~~~~~~~~----------------------------- 275 (305)
T 3dr2_A 237 --------PDGLPDGFCVDR--GGW-LWSSSGTG-VCVFDSDGQLLGHIPT----------------------------- 275 (305)
T ss_dssp --------SSSCCCSEEECT--TSC-EEECCSSE-EEEECTTSCEEEEEEC-----------------------------
T ss_pred --------CCCCCCeEEECC--CCC-EEEecCCc-EEEECCCCCEEEEEEC-----------------------------
Confidence 013345677755 787 67766555 8899986544333321
Q ss_pred CCCCceeEEEeecCCCCEEEEEEccCcEE
Q 001279 247 PEEKEISALCWASSSGSILAVGYIDGDIL 275 (1108)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~DG~I~ 275 (1108)
...+++++|. ++++.|+.++.++-.+
T Consensus 276 --~~~~~~~~f~-~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 276 --PGTASNCTFD-QAQQRLFITGGPCLWM 301 (305)
T ss_dssp --SSCCCEEEEC-TTSCEEEEEETTEEEE
T ss_pred --CCceeEEEEe-CCCCEEEEEcCCeEEE
Confidence 2257889976 9999998888765433
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.44 E-value=2.7e-06 Score=105.80 Aligned_cols=195 Identities=12% Similarity=0.149 Sum_probs=122.1
Q ss_pred CCCCceEEEEcCCCCEEEEEEC-----CCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC----------
Q 001279 34 IPATASILAFDHIQRLLAIATL-----DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN---------- 98 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~-----dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~---------- 98 (1108)
+...+..++|||||++||.+.. ...|++||+.+.+.+...-+......++|+ |+..|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 4456888999999999996543 357999999877755332111123578899 999999988774
Q ss_pred ---cEEEEEcCCCee----eeee-c-CCCCeeEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeeccccc
Q 001279 99 ---EIQVWSLESRSL----ACCL-K-WESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADAL 165 (1108)
Q Consensus 99 ---~I~vWd~~s~~~----~~~~-~-~~~~Itsl~~~~~~~~l~vg~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~ 165 (1108)
.|.+|++.+... +... . +...+..+.++|++++|++.... ..|++++++...+.+.. +..+.
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~----l~~~~- 280 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT----VQGDL- 280 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE----EECSS-
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE----EeCCC-
Confidence 399999987642 2222 2 34457889999999988765432 35666665543333332 22221
Q ss_pred ccccCCCCCCCCCeEEEecccCCCCCEEEEEEC----CCeEEEEEccCCeE---EEEeCCCcccccccccCCCCCCCCCc
Q 001279 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----NALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1108)
Q Consensus 166 ~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----dg~V~lWdl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1108)
...... +.| ++..|+..+. ++.|.+||+.++.. ..+..+
T Consensus 281 -----------~~~~~~-~~~--~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-------------------- 326 (693)
T 3iuj_A 281 -----------DADVSL-VDN--KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-------------------- 326 (693)
T ss_dssp -----------SSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--------------------
T ss_pred -----------CceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--------------------
Confidence 233333 434 4555655543 35788999887643 333322
Q ss_pred ccCcCCCCCCCCceeEEEeecCCCCEEEEEEccC---cEEEEecCC
Q 001279 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTST 281 (1108)
Q Consensus 239 ~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG---~I~lWd~~~ 281 (1108)
...+. .| +++++.|+....++ .|.+|++..
T Consensus 327 ----------~~~~~--~~-s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 327 ----------RQQVL--TV-HSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp ----------CSSCE--EE-EEETTEEEEEEEETTEEEEEEECTTS
T ss_pred ----------CCCEE--EE-EEECCEEEEEEEECCeeEEEEEECCC
Confidence 22232 44 47888887777654 688888763
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.41 E-value=2.5e-05 Score=87.89 Aligned_cols=227 Identities=11% Similarity=0.098 Sum_probs=130.1
Q ss_pred ceeeeeeCCCCCceEEEEcCCCCEEEEEEC--CCcEEEEecCCcceEE-------eCCCCCCEEEEEEeeCCCEEEEEeC
Q 001279 26 LRIAVHYGIPATASILAFDHIQRLLAIATL--DGRIKVIGGDGIEGLL-------ISPSQLPYKNLEFLQNQGFLISITN 96 (1108)
Q Consensus 26 ~~~~~~~G~~~~is~la~sp~~~~LA~Gs~--dG~I~iw~~~~~~~~~-------~~~h~~~V~~l~fs~d~~~L~S~s~ 96 (1108)
++.+..+. ..+..++++|+++++++... +|.++||.++...+.. ...|-..+..++|.+++. |..+..
T Consensus 9 ~~~v~~~~--~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~ 85 (343)
T 2qe8_A 9 LEVVAELS--LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDN 85 (343)
T ss_dssp CEEEEEES--SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEEC
T ss_pred eEEEEEcC--CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcC
Confidence 34455544 67889999999999888642 3435555543222221 112445899999999965 444443
Q ss_pred ------CCcEEEEEcCCCeeeeeecCC-------CCeeEEEEecCCCEEEEEe----CCCcEEEEEEecCCCeeeeecee
Q 001279 97 ------DNEIQVWSLESRSLACCLKWE-------SNITAFSVISGSHFMYIGD----ENGLMSVIKYDADEGKLFQLPYN 159 (1108)
Q Consensus 97 ------d~~I~vWd~~s~~~~~~~~~~-------~~Itsl~~~~~~~~l~vg~----~dg~V~vw~~d~~~~~l~~~~~~ 159 (1108)
++.|.+||+.+++++..+... ..+..+++++++.++++++ .++.|.+|+++. +++...
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~--g~~~r~--- 160 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT--GLAARV--- 160 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT--CCEEEE---
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC--CCEEEE---
Confidence 578999999999877666432 3468999998777777665 467777777653 444321
Q ss_pred eccccc--c---------cccC--CCCC----CCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCccc
Q 001279 160 ISADAL--S---------EKAG--FPLL----SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1108)
Q Consensus 160 i~~~~~--~---------~~~~--~~~~----~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~ 222 (1108)
+.+|.. . ..+. .+.. -...+.+|+|+| ++..|+.+...+. ++|.+....... .......
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--dg~~ly~~~~~~~-~l~~~~~~~~~~-~~~~~~~ 236 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--ENEWLYLSPMHST-SMYRIKSADLSN-LQLTDAE 236 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--TSCEEEEEESSCS-EEEEEEHHHHTC-TTCCHHH
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc--CCCEEEEEeCCCC-eEEEEEHHHhcC-CCCChhh
Confidence 221100 0 0000 0000 013478999988 7877888877774 555554210000 0000000
Q ss_pred ccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
....+ ... .+......+++. ++|..+++...++.|.+||..+
T Consensus 237 ~~~~~--------~~~--------g~~g~pdgia~d-~~G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 237 LGSKI--------ERY--------SEKPICDGISID-KDHNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp HHTTC--------EEE--------EECCSCSCEEEC-TTCCEEEEEGGGTEEEEEETTT
T ss_pred hhcce--------Eec--------ccCCCCceEEEC-CCCCEEEEccCCCeEEEEECCC
Confidence 00000 000 002234567754 8999999988999999999843
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.41 E-value=5.9e-06 Score=102.73 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=79.2
Q ss_pred CCCCEEEEEEeeCCCEEEEEe-----CCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCc---------
Q 001279 75 SQLPYKNLEFLQNQGFLISIT-----NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGL--------- 140 (1108)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s-----~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~--------- 140 (1108)
|...+..++|||||.+|+-+. ...+|+|||+.+++.+...........++|+ +++.|+.+..+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 556789999999999887443 2256999999999876543221223577899 9998888877643
Q ss_pred ----EEEEEEecCCCeeeeeceeecc-cccccccCCCCCCCCCeEEEecccCCCCCEEEEEECC----CeEEEEEccCC
Q 001279 141 ----MSVIKYDADEGKLFQLPYNISA-DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----ALVILWDVSEA 210 (1108)
Q Consensus 141 ----V~vw~~d~~~~~l~~~~~~i~~-~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d----g~V~lWdl~~~ 210 (1108)
|++|++.+....-... |..+. +. ..+.++.|+| +|++|++.... ..|.+||+.++
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v-~~~~~~~~------------~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLV-FGAIPAQH------------HRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEE-ESCSGGGC------------CSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTST
T ss_pred CCcEEEEEECCCCcccceEE-EecCCCCC------------eEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCC
Confidence 7777765432211111 22222 22 4578899988 78877655432 48899998775
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.37 E-value=0.00014 Score=89.76 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=68.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCC-----------e-eEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWESN-----------I-TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~-----------I-tsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~ 155 (1108)
+..|+.++.++.|..+|..+++.+..+..... + ..+++ .+..+++++.+|.|+. +|..+|++.-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~A--lDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEA--IDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEE--EETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEE--EECCCCCEee
Confidence 56788888899999999999999988754321 0 11222 4678999999996655 5555677663
Q ss_pred eceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC------CCeEEEEEccCCeEEEEe
Q 001279 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~lWdl~~~~~~~~~ 216 (1108)
. +....+. .....+...|.-.+..++++.. +|.|..||..+++.++.+
T Consensus 146 ~-~~~~~~~------------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 146 S-VDTRADH------------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp E-EECCSCT------------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred e-ecCcCCC------------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 2 2221010 0001111122111233666543 689999999999988765
No 227
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.019 Score=72.00 Aligned_cols=206 Identities=11% Similarity=0.071 Sum_probs=120.8
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeC-C-------CCCCEEEEEEee--CCCEEEEEeCCCcEEEEEcC
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-P-------SQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~-~-------h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWd~~ 106 (1108)
.|.+|..++++..|-+|+.++-+..|+.......... . ....|.++.... ++ .|..++.++-|..+|..
T Consensus 67 ~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~ 145 (781)
T 3v9f_A 67 ELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIA 145 (781)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETT
T ss_pred ccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECC
Confidence 4889999999984556888856999998765544321 1 123688888776 54 45556656679999988
Q ss_pred CCeeeeeec------CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 107 SRSLACCLK------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 107 s~~~~~~~~------~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
+++...... ....|.++..+.++. |.+|+.++-+.. ++...+++.. |...... . .......|.
T Consensus 146 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~~Gl~~--~~~~~~~~~~--~~~~~~~---~---~~l~~~~i~ 214 (781)
T 3v9f_A 146 TGKFTHYNKSTVPALPSEQTWTATEAEDGK-LYIGHVEGGLSI--LSLNDKSVKH--FVHDPQN---P---NSLPGNDVR 214 (781)
T ss_dssp TTEEEEESTTTCTTCSCCCEEEEEEEETTE-EEEEETTTEEEE--EETTTTEEEE--ECC--------------CCSSEE
T ss_pred CCeEEeeccCcccCCCccceEEEEECCCCC-EEEEecCCCeEE--EcCCCCceEe--eecCCCC---c---ccCCCCcee
Confidence 876543321 124588888877665 555666643544 4444444432 2111000 0 000114588
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
++...+ ++. |.+|..+ -+.+||..+++...+... ...+. ......|.+++.. +
T Consensus 215 ~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~-------------~~~~~---------~l~~~~i~~i~~d-~ 267 (781)
T 3v9f_A 215 CIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNN-------------PGNIH---------GALSSYIFSIKQL-K 267 (781)
T ss_dssp EEEECT--TCC-EEEEETT-EEEEEETTTTEEEC---------------------------------CCCCEEEEEEC-T
T ss_pred EEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcC-------------CCccc---------cccCceEEEEEEC-C
Confidence 888844 666 7888777 578899887765433211 00000 0015578888843 5
Q ss_pred CCCEEEEEEccCcEEEEecCCC
Q 001279 261 SGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+|. |..|+..+-|.+++..+.
T Consensus 268 ~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 268 DNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp TSE-EEEEESSSCEEEEETTCC
T ss_pred CCC-EEEEeCCCCeEEECCCCC
Confidence 554 666777566888888654
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.34 E-value=1.1e-05 Score=92.64 Aligned_cols=206 Identities=11% Similarity=0.045 Sum_probs=125.2
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEecCCcceEEe--CC---C---CCCEEEEEEeeCCCEEEEEeC--CCc
Q 001279 40 ILAFDHIQRLLAIAT----------LDGRIKVIGGDGIEGLLI--SP---S---QLPYKNLEFLQNQGFLISITN--DNE 99 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs----------~dG~I~iw~~~~~~~~~~--~~---h---~~~V~~l~fs~d~~~L~S~s~--d~~ 99 (1108)
-++++||+++|.++. .++.|.++|....+++-. .+ + ...-..+.|+|||++|+.+.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999998886 468899999977665421 22 0 123457899999999998874 588
Q ss_pred EEEEEcCCCeeeeeecCCCC--------eeEEEEecCCCEEEEEeCCCcEE-----------------------------
Q 001279 100 IQVWSLESRSLACCLKWESN--------ITAFSVISGSHFMYIGDENGLMS----------------------------- 142 (1108)
Q Consensus 100 I~vWd~~s~~~~~~~~~~~~--------Itsl~~~~~~~~l~vg~~dg~V~----------------------------- 142 (1108)
|.|.|+.+++++..+...+. -..+++++++.++++...++.+.
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999998877754331 11234445555555444333322
Q ss_pred --------EEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC----------CCeEEE
Q 001279 143 --------VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVIL 204 (1108)
Q Consensus 143 --------vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----------dg~V~l 204 (1108)
+.+.....-.+.. ++.+..... ...+ ........++++| ++.+++++.. ++.|.+
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~-~~~~~~~~~-i~~g---~~p~g~~~va~s~--dg~rlyVa~~~~~~gthk~~s~~VsV 354 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRA-PIEALTEAE-RADD---WRPGGWQQTAYHR--QSDRIYLLVDQRDEWKHKAASRFVVV 354 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECC-CEESSCTTT-GGGT---EEECSSSCEEEEG--GGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred EeCCCcEEEEeccCCceEEee-eeeeccccc-cccc---cccCCceeeEEcC--CCCEEEEEecccccccccCCCCEEEE
Confidence 1111100000000 000000000 0000 0001112257777 6777777653 357999
Q ss_pred EEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-EEEEEE-ccCcEEEEecCCC
Q 001279 205 WDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTSTT 282 (1108)
Q Consensus 205 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~-~DG~I~lWd~~~~ 282 (1108)
+|..+.+++....- .....++.| +|||+ .+++.. .+++|.++|..+.
T Consensus 355 ID~~T~kvv~~I~v------------------------------g~~P~gia~-spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 355 LNAETGERINKIEL------------------------------GHEIDSINV-SQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EETTTCCEEEEEEE------------------------------EEEECEEEE-CCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCeEEEEEEC------------------------------CCCcCeEEE-ccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 99999988765421 224667786 59999 888888 5999999999876
Q ss_pred C
Q 001279 283 A 283 (1108)
Q Consensus 283 ~ 283 (1108)
+
T Consensus 404 k 404 (426)
T 3c75_H 404 E 404 (426)
T ss_dssp C
T ss_pred C
Confidence 4
No 229
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.33 E-value=2.6e-07 Score=78.23 Aligned_cols=64 Identities=27% Similarity=0.530 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001279 1037 RLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1107 (1108)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 1107 (1108)
....+..|+.. -.++...+..+-+++.||||||+.|.+||++|++.|+.|..-|++|- .+.|||
T Consensus 13 ~~d~l~~vq~e---l~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~----rk~wwk 76 (80)
T 1l4a_A 13 QSKRLQQTQAQ---VEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLK----RKFWWK 76 (80)
T ss_dssp CSCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHH----HHCC--
T ss_pred cccHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34556667666 44556899999999999999999999999999999999999998884 456886
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.33 E-value=3.6e-05 Score=84.95 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=107.4
Q ss_pred CCCceEEEEcCCCC-EEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001279 35 PATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 35 ~~~is~la~sp~~~-~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~ 113 (1108)
..-....+|+|+++ ++.++..++.|..|+.++. ......+...+..++|+++|..+++...++.|.+||.. ++....
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 34456789999998 7778888899999998554 33333445678999999998755555556889999986 544322
Q ss_pred ec-C----CCCeeEEEEecCCCEEEE----EeCC-----------CcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001279 114 LK-W----ESNITAFSVISGSHFMYI----GDEN-----------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 114 ~~-~----~~~Itsl~~~~~~~~l~v----g~~d-----------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1108)
.. . ...+..+++++++++.++ |..+ +.-.||.++...+++... . ..
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~---~--~~--------- 187 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM---A--DL--------- 187 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE---E--EE---------
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE---e--cC---------
Confidence 21 1 134678999999987775 3321 234677777655555532 1 11
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECC------CeEEEEEccCCe
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYEN------ALVILWDVSEAQ 211 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~d------g~V~lWdl~~~~ 211 (1108)
.....++|+| +++.|+++... +.|.+||+..+.
T Consensus 188 ---~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 188 ---DHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp ---SSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred ---CCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 4478899988 78777777765 789999998765
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.29 E-value=7.3e-05 Score=92.15 Aligned_cols=188 Identities=11% Similarity=0.063 Sum_probs=108.4
Q ss_pred ccCCCCcEEEEEecCC-------------------cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCC--
Q 001279 490 KCHSVDRVYLAGYHDG-------------------SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-- 548 (1108)
Q Consensus 490 ~~s~~~~llatgs~DG-------------------tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~-- 548 (1108)
++.+++.++..+..++ +|..+|..++.....+.....- ...... ......+....+|
T Consensus 249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d-~wd~~~-~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD-NWDYTS-TQPMILADIKIAGKP 326 (677)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC-CSCCCC-CSCCEEEEEEETTEE
T ss_pred eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc-cccccc-CCCcEEEecccCCcE
Confidence 5666777777776654 5999999999876555432110 000011 1233344555688
Q ss_pred -CeEEEEecCceEEEEEecCCCCCccccccccCccceeecccCCcceE-----------EEEEeecCcC--EEEEEEcCC
Q 001279 549 -SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC-----------RAVFSLVNSP--VRALQFTSS 614 (1108)
Q Consensus 549 -~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----------~~~~~~h~~~--Vtslafspd 614 (1108)
..|++++.+|.|.++|..+...--...+.... -...+. ..+-.. ...+-...+. =..++|+|+
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~--~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN--WASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCS--SEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred eeEEEEECCCCEEEEEECCCCCEeccccccccC--cccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 68899999999999998765321111111000 000000 000000 0000000000 025788998
Q ss_pred CCEEEEEeC-------------------------------------------CCeEEEEEccCceEEEEeecCCCCCCce
Q 001279 615 GAKLAVGFE-------------------------------------------CGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1108)
Q Consensus 615 g~~LavGs~-------------------------------------------dG~V~vwd~~~~~~~~~~~~~~~h~~~V 651 (1108)
..++.++.. .|.|..||+.+++++++... ..++
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~ 479 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPW 479 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCC
Confidence 888877643 27899999999999987653 2223
Q ss_pred EEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
....+. ..+.++++++.||.|++||..+|+++.+.
T Consensus 480 ~~g~~~----------------------~~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 480 NGGTLT----------------------TAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp CCCEEE----------------------ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCcceE----------------------eCCCEEEEECCCCcEEEEECCCCceeeee
Confidence 333333 23668899999999999999999998654
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.23 E-value=0.00032 Score=86.63 Aligned_cols=209 Identities=11% Similarity=0.075 Sum_probs=115.9
Q ss_pred CCEEEEEECCCcEEEEecCCcceEEeCCCCCC-----------E-EEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLP-----------Y-KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~-----------V-~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
+..|.+++.++.|+.+|..+.+.+-......+ + ..+.+ ++..|+.++.|+.|..||..+++.+...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 67888888899999999866655533322111 0 11222 3568888999999999999999998776
Q ss_pred cCC------CCeeEEEEecCCCEEEEEeC------CCcEEEEEEecCCCeeeeeceeecccccc----ccc--CCC--C-
Q 001279 115 KWE------SNITAFSVISGSHFMYIGDE------NGLMSVIKYDADEGKLFQLPYNISADALS----EKA--GFP--L- 173 (1108)
Q Consensus 115 ~~~------~~Itsl~~~~~~~~l~vg~~------dg~V~vw~~d~~~~~l~~~~~~i~~~~~~----~~~--~~~--~- 173 (1108)
... ..+++--.. .+..++++.. +|.| +-+|..+|++.-.-+..++.... ... ... .
T Consensus 148 ~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v--~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYV--TAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp ECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEE--EEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred cCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEE--EEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 432 122211111 1345666653 5655 45555567765321111111000 000 000 0
Q ss_pred -------CCCCCeEEEecccCCCCCEEEEEECCCe-------------------EEEEEccCCeEEEEeCCCcccccccc
Q 001279 174 -------LSHQPVVGVLPHPNSSGNRVLIAYENAL-------------------VILWDVSEAQIIFVGGGKDLQLKDGV 227 (1108)
Q Consensus 174 -------~~~~~V~~v~f~P~~~~~~ll~~~~dg~-------------------V~lWdl~~~~~~~~~~~~~~~~~~~~ 227 (1108)
........+++.| +..+++++..++. |..||.++++.++.+.......
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~---- 298 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDP--ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA---- 298 (689)
T ss_dssp STHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC----
T ss_pred ceeeecCCCCccccceeEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc----
Confidence 0001112466766 4566888888764 9999999999988764210000
Q ss_pred cCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC---EEEEEEccCcEEEEecCCCC
Q 001279 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS---ILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~---~l~sg~~DG~I~lWd~~~~~ 283 (1108)
.... ...++.-.... .+|+ .++.++.+|.++++|..+++
T Consensus 299 --------wd~~--------~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 299 --------WDYT--------ATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp --------SCCC--------CCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred --------cccc--------CCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 0000 01111111111 3565 78899999999999998874
No 233
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=98.18 E-value=1.2e-06 Score=70.55 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHh
Q 001279 1053 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1100 (1108)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~ 1100 (1108)
++...+..+-+++.||||||+.|.+||++|++.|+.|..-|++|.++|
T Consensus 15 ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 62 (63)
T 1n7s_A 15 EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999999999999999999999999999999886
No 234
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=0.041 Score=68.95 Aligned_cols=212 Identities=9% Similarity=0.094 Sum_probs=117.8
Q ss_pred CceEEEEcC--CCCEEEEEECCCcEEEEecCCcceEEeCC------CCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC
Q 001279 37 TASILAFDH--IQRLLAIATLDGRIKVIGGDGIEGLLISP------SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1108)
Q Consensus 37 ~is~la~sp--~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~------h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~ 108 (1108)
.|.++..+. ++.+ -+|+.++.|..|+........... ....|.++...+++. |..++.++-|..||..++
T Consensus 116 ~i~~i~~d~~~~g~l-wi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~ 193 (781)
T 3v9f_A 116 DVTHITSSVQAGKGL-WVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGK-LYIGHVEGGLSILSLNDK 193 (781)
T ss_dssp CEEEEEECSSTTSEE-EEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTE-EEEEETTTEEEEEETTTT
T ss_pred cceEEEecCccCCCE-EEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCC-EEEEecCCCeEEEcCCCC
Confidence 578888887 6654 457755568889876555433321 124588888877754 545666657999998887
Q ss_pred eeeeeec--------CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 109 SLACCLK--------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 109 ~~~~~~~--------~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
+...... ....|.++..+.++.+ .+|+.+| +.+++ ...+++.. |...... ........|.
T Consensus 194 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-wigt~~G-l~~~d--~~~~~~~~--~~~~~~~------~~~l~~~~i~ 261 (781)
T 3v9f_A 194 SVKHFVHDPQNPNSLPGNDVRCIYKDTNGNI-WIGTSKG-LALFN--ANTETFTN--FHNNPGN------IHGALSSYIF 261 (781)
T ss_dssp EEEEECC--------CCSSEEEEEECTTCCE-EEEETTE-EEEEE--TTTTEEEC-------------------CCCCEE
T ss_pred ceEeeecCCCCcccCCCCceeEEEEcCCCCE-EEEeCCc-HheEC--CCCCcEEE--EEcCCCc------cccccCceEE
Confidence 6543210 1246889988877764 4555555 54444 44445442 2111100 0001125688
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
++...+ +|. |.+|+..+-|.++|..+++....... .+.. +. ..... .......|.+++.. +
T Consensus 262 ~i~~d~--~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-~f~~---~~--~~~~~---------~~l~~~~v~~i~~D-~ 322 (781)
T 3v9f_A 262 SIKQLK--DNK-LWIATELNGIMILDLQQNQFLLPEQI-RFEF---IR--EGDNN---------YSLSNASARYIFQD-S 322 (781)
T ss_dssp EEEECT--TSE-EEEEESSSCEEEEETTCC----------CEE---EC--BCSST---------TSBSSSCEEEEEEC-S
T ss_pred EEEECC--CCC-EEEEeCCCCeEEECCCCCeeeeeecc-cccc---cc--CCCCC---------CCCCCCeEEEEEEe-C
Confidence 988844 665 88888855568889887765332210 0000 00 00000 00115678898843 6
Q ss_pred CCCEEEEEEccCcEEEEecCCC
Q 001279 261 SGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
+|. |-.|+.++-|..|+....
T Consensus 323 ~g~-lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 323 FNN-IWIGTWGGGINFISNAPP 343 (781)
T ss_dssp SCC-EEEEEBSSCEEEECSSCC
T ss_pred CCC-EEEEecCCeEEEeCCCCC
Confidence 665 677777777888887644
No 235
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.16 E-value=1.6e-06 Score=75.84 Aligned_cols=60 Identities=25% Similarity=0.406 Sum_probs=51.2
Q ss_pred CCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHh
Q 001279 1038 LRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1100 (1108)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~ 1100 (1108)
...+.+|+.. -.++...+..+-+++.||||||+.|.+||++|+..|+.|..-|++|.++|
T Consensus 29 ~d~l~~vq~e---ldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 29 NRRLQQTQAQ---VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp SHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655 44556899999999999999999999999999999999999999998774
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.13 E-value=3.3e-07 Score=104.64 Aligned_cols=180 Identities=14% Similarity=0.124 Sum_probs=98.0
Q ss_pred CCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCC--CeeE-
Q 001279 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES--NITA- 122 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~--~Its- 122 (1108)
++.+|++|+.||.|+.||..+.+.+..... +++.+..+..++..+++++.|+.|..||..+++.+....... .+.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 578999999999999999876666533333 556566666777777777899999999999998766553321 1110
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeE
Q 001279 123 FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALV 202 (1108)
Q Consensus 123 l~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V 202 (1108)
..+ ..+..+++|+.+|.|+.|+.. +|+.. +++..+. .+.+.| .+..+++++.++.|
T Consensus 87 p~~-~~~~~v~~g~~dg~v~a~D~~--tG~~~---w~~~~~~----------------~~~~~p--~~~~v~~~~~dg~v 142 (369)
T 2hz6_A 87 PCR-SSDGILYMGKKQDIWYVIDLL--TGEKQ---QTLSSAF----------------ADSLSP--STSLLYLGRTEYTI 142 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC---------------------------------------------EEEEEEEEEE
T ss_pred ceE-ecCCEEEEEeCCCEEEEEECC--CCcEE---EEecCCC----------------cccccc--cCCEEEEEecCCEE
Confidence 011 135578888889977776654 35554 2233211 123445 45568999999999
Q ss_pred EEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCC---CEEEEEEccCcEEEEec
Q 001279 203 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG---SILAVGYIDGDILLWNT 279 (1108)
Q Consensus 203 ~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg---~~l~sg~~DG~I~lWd~ 279 (1108)
..||..+++.++.+.... ..+.+ ...+. ..+++++.||.|..||.
T Consensus 143 ~a~d~~tG~~~W~~~~~~-------------------------------~~~~~-~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYFD-------------------------------YAASL-PEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp ECCCSSSSSCCCEEEEEE-------------------------------ECCBC-CCCCTTCCCCEEEEETSCEEEEECT
T ss_pred EEEECCCCCEEEeEeccc-------------------------------ccCcc-ccCCccccceEEEECCCCEEEEEEC
Confidence 999999987654432100 00011 11221 45778899999999999
Q ss_pred CCC
Q 001279 280 STT 282 (1108)
Q Consensus 280 ~~~ 282 (1108)
.++
T Consensus 191 ~tG 193 (369)
T 2hz6_A 191 ESG 193 (369)
T ss_dssp TTC
T ss_pred CCC
Confidence 876
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.12 E-value=6.6e-05 Score=84.45 Aligned_cols=199 Identities=9% Similarity=-0.000 Sum_probs=126.6
Q ss_pred CCCceEEEEcCCCCEEEEEEC-----CCcEEEEecCCcceE--EeCC-----CCCCEEEEEEeeCCCEE-EEEe---CCC
Q 001279 35 PATASILAFDHIQRLLAIATL-----DGRIKVIGGDGIEGL--LISP-----SQLPYKNLEFLQNQGFL-ISIT---NDN 98 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~-----dG~I~iw~~~~~~~~--~~~~-----h~~~V~~l~fs~d~~~L-~S~s---~d~ 98 (1108)
-..+..++++++++++++-+. +++|.+||..+.+++ ...+ +...+..++|.++++++ ++-. .++
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~ 145 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA 145 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence 356889999999988777654 589999998755432 2221 22356899999865555 4444 578
Q ss_pred cEEEEEcCCCeeeeeecC------------------------------CCCeeEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001279 99 EIQVWSLESRSLACCLKW------------------------------ESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1108)
Q Consensus 99 ~I~vWd~~s~~~~~~~~~------------------------------~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~ 148 (1108)
.|.+||+.+++....+.. ...+..++++|++++|++++..+. ++|.++.
T Consensus 146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~ 224 (343)
T 2qe8_A 146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKS 224 (343)
T ss_dssp EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEH
T ss_pred eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEH
Confidence 899999988765543311 123678999999999999988775 6777763
Q ss_pred C---CCeeeee----ceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcc
Q 001279 149 D---EGKLFQL----PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDL 221 (1108)
Q Consensus 149 ~---~~~l~~~----~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~ 221 (1108)
. .+.+... .+...++ ...+.++++.+ +|..+++.+.++.|.+||..+++...+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~------------~g~pdgia~d~--~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-- 288 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSE------------KPICDGISIDK--DHNIYVGDLAHSAIGVITSADRAYKLLVTDE-- 288 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEE------------CCSCSCEEECT--TCCEEEEEGGGTEEEEEETTTTEEEEEEECG--
T ss_pred HHhcCCCCChhhhhcceEeccc------------CCCCceEEECC--CCCEEEEccCCCeEEEEECCCCCEEEEEECC--
Confidence 1 1111000 0000011 13456778866 6887777778899999998556554332210
Q ss_pred cccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEE
Q 001279 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1108)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lW 277 (1108)
....++++++. ++|..+++....+.+.+|
T Consensus 289 --------------------------~~~~p~~va~~-~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 289 --------------------------KLSWTDSFNFG-SDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp --------------------------GGSCEEEEEEC-TTSCEEEEECCGGGSGGG
T ss_pred --------------------------ceecCCeeEEC-CCCcEEEEeCcccccccc
Confidence 02357788864 888877776655544433
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.12 E-value=0.0006 Score=72.65 Aligned_cols=224 Identities=9% Similarity=0.042 Sum_probs=133.3
Q ss_pred ccccceeeeeeCCCCC--ceEEEEcCCCCEEEEEE-C--CCcEEEEecCCcceEEeC--CCCCCEEEEEEeeCCCEEEEE
Q 001279 22 ADLNLRIAVHYGIPAT--ASILAFDHIQRLLAIAT-L--DGRIKVIGGDGIEGLLIS--PSQLPYKNLEFLQNQGFLISI 94 (1108)
Q Consensus 22 ~~~~~~~~~~~G~~~~--is~la~sp~~~~LA~Gs-~--dG~I~iw~~~~~~~~~~~--~h~~~V~~l~fs~d~~~L~S~ 94 (1108)
+....++...|.|+.. ..-|+|+|++ .|.+++ . ++.|+++|..+.+++... +...-...+.+. +.+|..+
T Consensus 5 ~~~~~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~ 81 (266)
T 2iwa_A 5 RVYIVEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQV 81 (266)
T ss_dssp CEEEEEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEE
T ss_pred CccCceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEE
Confidence 3445666777777755 4689999986 454544 2 589999999877665332 221122344444 4566665
Q ss_pred e-CCCcEEEEEcCCCeeeeeecCC-CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001279 95 T-NDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1108)
Q Consensus 95 s-~d~~I~vWd~~s~~~~~~~~~~-~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1108)
+ .++.+.++|..+.+.+..+... .. ...+.+++++++++..++.|++ +|....+.... ++-....+
T Consensus 82 t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~v--iD~~t~~v~~~---I~Vg~~~~----- 149 (266)
T 2iwa_A 82 VWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYE--IDPHTFKLIKK---HNVKYNGH----- 149 (266)
T ss_dssp ETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEE--ECTTTCCEEEE---EECEETTE-----
T ss_pred EecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEE--EECCCCcEEEE---EEECCCCc-----
Confidence 5 5789999999999998888554 32 2345567888888887776555 55544444432 22110000
Q ss_pred CCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCce
Q 001279 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1108)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 252 (1108)
....+..+.|. ++..++....++.|.+.|..+++++........... ... .........
T Consensus 150 --p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~-~~~---------------~~~~~~~v~ 208 (266)
T 2iwa_A 150 --RVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK-LID---------------EGFRDIDVL 208 (266)
T ss_dssp --ECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH-HHH---------------TTCTTCCCE
T ss_pred --ccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc-ccc---------------ccccccCce
Confidence 00236677774 464333444678999999999988765432100000 000 000002356
Q ss_pred eEEEeecCCCCEE-EEEEccCcEEEEecCCC
Q 001279 253 SALCWASSSGSIL-AVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 253 tsl~w~spdg~~l-~sg~~DG~I~lWd~~~~ 282 (1108)
..++|. |+++.+ +++...+.+..-++...
T Consensus 209 nGIa~~-~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 209 NGIAWD-QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEE-TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEEc-CCCCEEEEECCCCCeEEEEEEecc
Confidence 789976 888755 55557788888887643
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.06 E-value=1.7e-05 Score=89.50 Aligned_cols=68 Identities=9% Similarity=-0.018 Sum_probs=52.8
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEecCCcceEEeC--C--C----CCCEEEEEEeeCCCEEEEEeC--CCc
Q 001279 40 ILAFDHIQRLLAIAT----------LDGRIKVIGGDGIEGLLIS--P--S----QLPYKNLEFLQNQGFLISITN--DNE 99 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs----------~dG~I~iw~~~~~~~~~~~--~--h----~~~V~~l~fs~d~~~L~S~s~--d~~ 99 (1108)
.++|+||+++|.++. .++.|.+||..+.++.-.. + . ...-..+.|+|||++|+.+.. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999999987 4689999999877665322 1 0 123458999999999998874 467
Q ss_pred EEE--EEcCC
Q 001279 100 IQV--WSLES 107 (1108)
Q Consensus 100 I~v--Wd~~s 107 (1108)
|.| +|..+
T Consensus 149 v~V~~iD~~t 158 (368)
T 1mda_H 149 AGLSVPGASD 158 (368)
T ss_dssp EEEEETTTEE
T ss_pred EEEEEEchhh
Confidence 888 99876
No 240
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.05 E-value=0.091 Score=68.08 Aligned_cols=125 Identities=10% Similarity=0.001 Sum_probs=72.5
Q ss_pred ceeeeeeCCCCCceEEEE-cC---CCCEEEEEECCCcEEE--EecC--CcceEEeCC-----CC----CCEEEEEEeeCC
Q 001279 26 LRIAVHYGIPATASILAF-DH---IQRLLAIATLDGRIKV--IGGD--GIEGLLISP-----SQ----LPYKNLEFLQNQ 88 (1108)
Q Consensus 26 ~~~~~~~G~~~~is~la~-sp---~~~~LA~Gs~dG~I~i--w~~~--~~~~~~~~~-----h~----~~V~~l~fs~d~ 88 (1108)
++....+.+.+.|.+++. .| ...+|++++.++++-| ||-. ..+...... .. .+-..++..|.|
T Consensus 67 L~~v~~~~l~G~I~~l~~~r~~g~~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~g 146 (1158)
T 3ei3_A 67 LRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPEC 146 (1158)
T ss_dssp EEEEEEEECSSCEEEEEEECCTTCSSCEEEEEETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTS
T ss_pred eEEEEEEEcccEEEEEEEEcCCCCCceEEEEEeCCceEEEEEEcCCCCceeEEEEeccccccCccccCCCCCEEEEcCCC
Confidence 455666778888888764 44 3479999999999988 4543 222221111 00 123478889998
Q ss_pred CEEEEEeCCCcEEEEEcCCC-eeeeee--c-CCCCeeEEEEec--CCCEEEEEeCCC---cEEEEEEecCC
Q 001279 89 GFLISITNDNEIQVWSLESR-SLACCL--K-WESNITAFSVIS--GSHFMYIGDENG---LMSVIKYDADE 150 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~-~~~~~~--~-~~~~Itsl~~~~--~~~~l~vg~~dg---~V~vw~~d~~~ 150 (1108)
+.++....++.+.|+-+... ..+... . ....|.+++|-. ..+.+|+=.+|. .+..|.++...
T Consensus 147 R~~~l~~~e~~~~v~pl~~~~~~l~~~~~~l~~~~v~d~~fL~g~~~P~~A~Ly~d~~~~~l~~y~ldl~~ 217 (1158)
T 3ei3_A 147 RMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLRE 217 (1158)
T ss_dssp SEEEEECBTTEEEEEECCTTCTTCCCEEEECSCCCEEEEEECSSCSSCEEEEEEEETTEEEEEEEEEETTT
T ss_pred CEEEEEeccCEEEEEEecCCcccccccccccccceEEEEEEecCCCCcEEEEEEECCCCCEEEEEEEEcCC
Confidence 88888888999888877541 111111 1 234567777653 234444433322 34445555443
No 241
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=98.01 E-value=4.5e-06 Score=72.48 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHh
Q 001279 1053 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1100 (1108)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~ 1100 (1108)
++-..+..+-+|+.||||||+.|.+||++|+++|+.|...|++|-++|
T Consensus 16 evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 16 EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999998875
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.01 E-value=0.0008 Score=70.84 Aligned_cols=214 Identities=9% Similarity=0.097 Sum_probs=131.6
Q ss_pred cccccceeeeeeCCCCCc--eEEEEcCCCCEEEEEECCC--cEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-
Q 001279 21 AADLNLRIAVHYGIPATA--SILAFDHIQRLLAIATLDG--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT- 95 (1108)
Q Consensus 21 ~~~~~~~~~~~~G~~~~i--s~la~sp~~~~LA~Gs~dG--~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s- 95 (1108)
++....++...|.|+... --|.|+ ++.+..+.+.+| .|+.+|..+.+++....-...+-.....+++..|..+.
T Consensus 26 ~~~~~~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 26 IPIYDYQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp CCEEEEEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred CcccceEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe
Confidence 445667788888888777 668998 676666666666 89999998777663333223332222233345665555
Q ss_pred CCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001279 96 NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1108)
Q Consensus 96 ~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1108)
.++.+.++|..+.+.+..+.....=.. +.++++.|++.+.++. ||.+|..+.+.... ..+.... + .
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG~g--lt~dg~~L~~SdGs~~--i~~iDp~T~~v~~~-I~V~~~g--~-------~ 170 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEGWG--LTHNDQYLIMSDGTPV--LRFLDPESLTPVRT-ITVTAHG--E-------E 170 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCCCC--EEECSSCEEECCSSSE--EEEECTTTCSEEEE-EECEETT--E-------E
T ss_pred eCCEEEEEECccCcEEEEEECCCCceE--EecCCCEEEEECCCCe--EEEEcCCCCeEEEE-EEeccCC--c-------c
Confidence 588999999999999998876543333 3457788888876664 56666655555432 1121110 0 0
Q ss_pred CCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEE
Q 001279 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1108)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1108)
...+..+.| . +|...+..+.+..|.+.|..+++++.......+.-. .. ...........+
T Consensus 171 ~~~lNELe~--~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~-------~~----------~~~~~~~vlNGI 230 (262)
T 3nol_A 171 LPELNELEW--V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAE-------AG----------PLPSPIDVLNGI 230 (262)
T ss_dssp CCCEEEEEE--E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGG-------SC----------SCCSSCCCEEEE
T ss_pred ccccceeEE--E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccc-------cc----------cccCcCCceEEE
Confidence 023445666 2 566444455688999999999998776543111110 00 000113456789
Q ss_pred EeecCCCCEEEEEEc
Q 001279 256 CWASSSGSILAVGYI 270 (1108)
Q Consensus 256 ~w~spdg~~l~sg~~ 270 (1108)
+|. |+++.|++.+.
T Consensus 231 A~d-p~~~~lfVTGK 244 (262)
T 3nol_A 231 AWD-KEHHRLFVTGK 244 (262)
T ss_dssp EEE-TTTTEEEEEET
T ss_pred EEc-CCCCEEEEECC
Confidence 986 88887777665
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.99 E-value=0.00067 Score=76.99 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=107.6
Q ss_pred ceEEEEcCCCCEEEEEECC------CcEEEEecCCcceEEeCC---CCCCE-EEEEEeeCCCEEEEEe------------
Q 001279 38 ASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISP---SQLPY-KNLEFLQNQGFLISIT------------ 95 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~d------G~I~iw~~~~~~~~~~~~---h~~~V-~~l~fs~d~~~L~S~s------------ 95 (1108)
...+...|++ +++++..+ |.|.++|..+.+++-..+ +...+ ..+-|+|++..+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence 3446678999 66665555 789999998777764443 22222 2477899999888874
Q ss_pred -------CCCcEEEEEcCCCeeeeeecCC---CCeeEEEE--ecCCCEEEEEeC------CCcEEEEEEecCCCeeeeec
Q 001279 96 -------NDNEIQVWSLESRSLACCLKWE---SNITAFSV--ISGSHFMYIGDE------NGLMSVIKYDADEGKLFQLP 157 (1108)
Q Consensus 96 -------~d~~I~vWd~~s~~~~~~~~~~---~~Itsl~~--~~~~~~l~vg~~------dg~V~vw~~d~~~~~l~~~~ 157 (1108)
.+++|.+||+.+++++..+... .....+.| +|++++++++++ +++|.+|.++. +.+....
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~ 296 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEK 296 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEE
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEE
Confidence 3688999999999888877653 23444545 999999999885 56888888874 4433211
Q ss_pred -eeecccccccccCCCCC------CCCCeEEEecccCCCCCEEEEEEC-CCeEEEEEcc
Q 001279 158 -YNISADALSEKAGFPLL------SHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVS 208 (1108)
Q Consensus 158 -~~i~~~~~~~~~~~~~~------~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~lWdl~ 208 (1108)
..++...... ..+.. ....+..|.++| ++++|+++.. .+.|.+||+.
T Consensus 297 vIdi~~~~v~~--~lp~~~~~f~~~~~~pa~I~lS~--DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 297 VIEIPAEPLEG--NLPEILKPFKAVPPLVTDIDISL--DDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEEECCEECCS--SCCGGGGGGTEECCCCCCEEECT--TSCEEEEEETTTTEEEEEECS
T ss_pred EEeCCCccccc--cccccccccccCCCceeEEEECC--CCCEEEEEeCCCCEEEEEEec
Confidence 1122211000 00000 014577888988 7887777665 6799999986
No 244
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.96 E-value=0.077 Score=64.14 Aligned_cols=159 Identities=15% Similarity=0.094 Sum_probs=98.8
Q ss_pred CCceEEEEcCCCCEEEEEEC-CCcEEEEecCCcc--eEEeCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeee
Q 001279 36 ATASILAFDHIQRLLAIATL-DGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLA 111 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~-dG~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~ 111 (1108)
..+..++|++.+..|..... .++|..++.++.. .......-.....|++.+.++.|+.+. ..+.|.+-|.......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 35778999998887777665 5889999987653 222333334688999999666666665 4678999999876433
Q ss_pred eee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 112 ~~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
... ..-.....++++|.+.+|+..+....-+|+..+.+....... +... .....+|++.| ++
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l---~~~~------------~~~P~Glald~--~~ 182 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INSE------------IYWPNGLTLDY--EE 182 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECSS------------CSSEEEEEEET--TT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE---EeCC------------CCCCcEEEEEc--cC
Confidence 333 233457789999998888888743222455554432222111 1111 15688999977 34
Q ss_pred CEEEEEE-CCCeEEEEEccCCe
Q 001279 191 NRVLIAY-ENALVILWDVSEAQ 211 (1108)
Q Consensus 191 ~~ll~~~-~dg~V~lWdl~~~~ 211 (1108)
.+|+.+- ..+.|..+|++...
T Consensus 183 ~~LY~aD~~~~~I~~~~~dG~~ 204 (619)
T 3s94_A 183 QKLYWADAKLNFIHKSNLDGTN 204 (619)
T ss_dssp TEEEEEETTTCCEEEESSSCCE
T ss_pred CEEEEEeCCCCeEEEecCCCCc
Confidence 4566554 34577777776643
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.95 E-value=0.0016 Score=69.91 Aligned_cols=157 Identities=10% Similarity=0.013 Sum_probs=101.7
Q ss_pred CceEEEEcCCCCEEEEEE-CCCcEEEEecCCcceEEe-CCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeeee
Q 001279 37 TASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~~ 113 (1108)
.+..++++|++..|.++. .+++|..++.++...... ...-.....+++.++++.|+.+. ..+.|.++|.........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999776666555 468999999977544322 22224678999999767666665 467899999876433222
Q ss_pred ecCC-CCeeEEEEecCCCEEEEEeCC---CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 114 LKWE-SNITAFSVISGSHFMYIGDEN---GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 114 ~~~~-~~Itsl~~~~~~~~l~vg~~d---g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
.... .....+++++++.+|++++.. +.|.+++++....+.. .... .....+++++| +
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~-----~~~~------------~~~P~gia~d~--~ 177 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL-----AQDN------------LGLPNGLTFDA--F 177 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE-----ECTT------------CSCEEEEEEET--T
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE-----EECC------------CCCCcEEEEcC--C
Confidence 2222 467899999988888887754 5565555543211111 1110 14588999987 4
Q ss_pred CCEEEEEE-CCCeEEEEEccCCeE
Q 001279 190 GNRVLIAY-ENALVILWDVSEAQI 212 (1108)
Q Consensus 190 ~~~ll~~~-~dg~V~lWdl~~~~~ 212 (1108)
+.+|+++. ..+.|.++|+.+...
T Consensus 178 ~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 178 SSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTEEEE
T ss_pred CCEEEEEECCCCEEEEEecCCCce
Confidence 55565555 457899999886544
No 246
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=97.91 E-value=1e-05 Score=67.36 Aligned_cols=63 Identities=19% Similarity=0.455 Sum_probs=49.8
Q ss_pred CCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001279 1038 LRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1107 (1108)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 1107 (1108)
...+..|+.. -.++-..+..+=+++.||||||+.|.+||++|+..|..|..-|+.|-++ -||+
T Consensus 7 ~d~l~~vq~e---l~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~----~ww~ 69 (74)
T 2nps_A 7 NDKIKHVQNQ---VDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ----MWWR 69 (74)
T ss_dssp CSSSHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCC-
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3444555443 2234578889999999999999999999999999999999999888766 4764
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.91 E-value=0.0031 Score=65.81 Aligned_cols=214 Identities=13% Similarity=0.124 Sum_probs=128.9
Q ss_pred ccccceeeeeeCCCCCce--EEEEcCCCCEEEEEECC--CcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-C
Q 001279 22 ADLNLRIAVHYGIPATAS--ILAFDHIQRLLAIATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-N 96 (1108)
Q Consensus 22 ~~~~~~~~~~~G~~~~is--~la~sp~~~~LA~Gs~d--G~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~ 96 (1108)
+.+.+++...|.|+.... -|.|+. +.+..+.+.+ ..|+.+|..+.+++....-...+-.......+.+|...+ .
T Consensus 5 ~~~~~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 5 PTQGYRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp CBCCEEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred cccceEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence 456778888998887766 689987 4555554554 489999998877764333222222222223345555554 5
Q ss_pred CCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001279 97 DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1108)
Q Consensus 97 d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1108)
++.+.++|..+.+++..+.....-..++ +++..|++++.++.| +-+|..+.+.... ..+..+. + ..
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l--~~iDp~t~~~~~~-I~V~~~g--~-------~~ 149 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVI--RKLDPDTLQQVGS-IKVTAGG--R-------PL 149 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEE--EEECTTTCCEEEE-EECEETT--E-------EC
T ss_pred CCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeE--EEEeCCCCeEEEE-EEEccCC--c-------cc
Confidence 8899999999999999887665434444 567888888877755 5555555554432 1221111 0 01
Q ss_pred CCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
..+..+.|. +|..++-.+.+..|.+.|..+++++....-..+... .. . ...........++
T Consensus 150 ~~lNeLe~~---~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~-------~~--~-------~~~~~~~vlNGIA 210 (243)
T 3mbr_X 150 DNLNELEWV---NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD-------AD--A-------LTDSTNDVLNGIA 210 (243)
T ss_dssp CCEEEEEEE---TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT-------TT--S-------CCCTTSSCEEEEE
T ss_pred ccceeeEEe---CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc-------cc--c-------ccCCcCCceEEEE
Confidence 235566662 565444444678999999999998776543111100 00 0 0001134567899
Q ss_pred eecCCCCEEEEEEc
Q 001279 257 WASSSGSILAVGYI 270 (1108)
Q Consensus 257 w~spdg~~l~sg~~ 270 (1108)
|. |+++.|++.+.
T Consensus 211 ~d-~~~~~lfVTGK 223 (243)
T 3mbr_X 211 FD-AEHDRLFVTGK 223 (243)
T ss_dssp EE-TTTTEEEEEET
T ss_pred Ec-CCCCEEEEECC
Confidence 87 87777666554
No 248
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.89 E-value=0.0012 Score=74.36 Aligned_cols=75 Identities=7% Similarity=-0.134 Sum_probs=53.5
Q ss_pred EEEEeCCCeEEEEec---------CceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEc
Q 001279 542 LSFCFINSSLAVGNE---------FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT 612 (1108)
Q Consensus 542 lafs~d~~~Lasg~~---------dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafs 612 (1108)
++|++|++.|.++.. ++.+.++|+.+.. .+..+.. ....+.|+|+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-------------------------vv~~i~v-g~~p~gi~~s 322 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-------------------------TSGPISN-GHDSDAIIAA 322 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-------------------------EEECCEE-EEEECEEEEC
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe-------------------------EEEEEEC-CCCcceEEEC
Confidence 689999998887643 2356699987752 1222222 2258899999
Q ss_pred CCCC-EEEEEe-CCCeEEEEEccCceEEEEee
Q 001279 613 SSGA-KLAVGF-ECGRVAVLDMNLLSVLFFTD 642 (1108)
Q Consensus 613 pdg~-~LavGs-~dG~V~vwd~~~~~~~~~~~ 642 (1108)
|||+ ++++.. .+++|.++|+.+.+++-...
T Consensus 323 ~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 9997 455555 59999999999999985443
No 249
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.82 E-value=0.21 Score=64.63 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=78.0
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcce--EEeCCCCCCEEEEEEeeC------CCEEEEEeC-CCcEEEEEcCC
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LLISPSQLPYKNLEFLQN------QGFLISITN-DNEIQVWSLES 107 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~--~~~~~h~~~V~~l~fs~d------~~~L~S~s~-d~~I~vWd~~s 107 (1108)
.|.+.+.+ +.++++++ ++.|.++.++..+. .....-...|+|+++.+- +.+++.++. |++|+|+++.+
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 46666655 35677775 67888887653222 122223557999999863 368888886 99999999998
Q ss_pred CeeeeeecCC--CCeeEEEEe--cCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001279 108 RSLACCLKWE--SNITAFSVI--SGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 108 ~~~~~~~~~~--~~Itsl~~~--~~~~~l~vg~~dg~V~vw~~d~~~~~l~~ 155 (1108)
.+.+...... ....++.+. ....+|.+|..||.+.-+.++...+.+..
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d 643 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSD 643 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccc
Confidence 7766554432 344444443 34468999999998877778766666654
No 250
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.80 E-value=2.7e-06 Score=96.93 Aligned_cols=145 Identities=11% Similarity=0.058 Sum_probs=76.5
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEEecCCCCCcc
Q 001279 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 573 (1108)
Q Consensus 494 ~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~~~~~~~ 573 (1108)
++..+++|+.||.|+.||..++.+...+.. .++.+..+..+++.+++++.||.|+.|+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~--- 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG--- 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------------CCSCCCC-----CCEEECTTTCCEEEC-----CC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCce---
Confidence 455788899999999999999986633322 1333444556788888888999999999865421
Q ss_pred ccccccCccceeecccCCcceEEEEEeecC-cCEE-EEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCce
Q 001279 574 FLFVLETKSEVHALPEGKISLCRAVFSLVN-SPVR-ALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1108)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~-~~Vt-slafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V 651 (1108)
+..+..+. ..+. +..+. ++..|++|+.||.|+.||..++++++.... +.
T Consensus 72 ----------------------~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~--- 122 (369)
T 2hz6_A 72 ----------------------LTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF--- 122 (369)
T ss_dssp ----------------------SEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------------------
T ss_pred ----------------------eeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC---
Confidence 01111110 0000 00111 345678899999999999999998854432 21
Q ss_pred EEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceec
Q 001279 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1108)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~ 706 (1108)
...++ |.+..|++++.|+.|.+||..+|+++-
T Consensus 123 -~~~~~----------------------p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 123 -ADSLS----------------------PSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp ---------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred -ccccc----------------------ccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 11222 346789999999999999999998763
No 251
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.80 E-value=0.00083 Score=74.38 Aligned_cols=100 Identities=8% Similarity=0.070 Sum_probs=55.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeecCCC-CeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001279 89 GFLISITNDNEIQVWSLESRSLACCLKWES-NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~-~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1108)
+.|..++.++.|..|| .+++.+....... .+.++.+.+++ .+++++.+ |.. ++. +++.... +....
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~--l~~--~d~-~g~~~~~-~~~~~----- 97 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG-TIYFGSDK--VYA--INP-DGTEKWR-FDTKK----- 97 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT-EECCSSCE--EEE--ECC-CGGGGGG-SCC-------
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC-cEEEecCc--EEE--ECC-CCcEEEE-EECCC-----
Confidence 4577777788999999 8888766654333 34566665555 46666555 444 443 2333211 11110
Q ss_pred ccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEE
Q 001279 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1108)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~ 215 (1108)
......... ++ .|.+++.++.|..+|.. ++....
T Consensus 98 ---------~~~~~~~~~---~~-~l~v~t~~~~l~~~d~~-g~~~~~ 131 (330)
T 3hxj_A 98 ---------AIVSDFTIF---ED-ILYVTSMDGHLYAINTD-GTEKWR 131 (330)
T ss_dssp ------------CCEEEE---TT-EEEEECTTSEEEEECTT-SCEEEE
T ss_pred ---------CcccCceEE---CC-EEEEEecCCEEEEEcCC-CCEEEE
Confidence 101111121 33 48888889999999988 655443
No 252
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.79 E-value=0.0046 Score=70.16 Aligned_cols=208 Identities=11% Similarity=0.056 Sum_probs=123.7
Q ss_pred CCCCEEEE-EECCCcEEEEecCCc----ceE-EeC------C-CCCCEEEEEEeeCCCEEEEEeCC------CcEEEEEc
Q 001279 45 HIQRLLAI-ATLDGRIKVIGGDGI----EGL-LIS------P-SQLPYKNLEFLQNQGFLISITND------NEIQVWSL 105 (1108)
Q Consensus 45 p~~~~LA~-Gs~dG~I~iw~~~~~----~~~-~~~------~-h~~~V~~l~fs~d~~~L~S~s~d------~~I~vWd~ 105 (1108)
+++++|.+ |..+++|+++|.... ++. .+. . ....-..+..+|+| .++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887766 556699999998432 222 110 0 11123456778998 66666655 78999999
Q ss_pred CCCeeeeeecCC----CCeeEEEEecCCCEEEEEe-------------------CCCcEEEEEEecCCCeeeeeceeecc
Q 001279 106 ESRSLACCLKWE----SNITAFSVISGSHFMYIGD-------------------ENGLMSVIKYDADEGKLFQLPYNISA 162 (1108)
Q Consensus 106 ~s~~~~~~~~~~----~~Itsl~~~~~~~~l~vg~-------------------~dg~V~vw~~d~~~~~l~~~~~~i~~ 162 (1108)
.+.+++...... .--..+.|+|++++|++.. ....|.+|+++. +++.+. +.+..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--~k~~~t-I~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--RKRIHS-LTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT--TEEEEE-EESCT
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC--CcEeeE-EecCC
Confidence 999998887432 1233478899999998885 367899998875 455543 22221
Q ss_pred cccccccCCCCCCCCCeEEEec--ccCCCCCEEEEEEC------CCeEEEEEccCCeEEEEeC--CCcccccccccCCCC
Q 001279 163 DALSEKAGFPLLSHQPVVGVLP--HPNSSGNRVLIAYE------NALVILWDVSEAQIIFVGG--GKDLQLKDGVVDSPS 232 (1108)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~~v~f--~P~~~~~~ll~~~~------dg~V~lWdl~~~~~~~~~~--~~~~~~~~~~~~~~~ 232 (1108)
.. .....|.| +| +++++++++. ++.|.+|..+.+....... .........+. .
T Consensus 249 ~g------------~~P~~i~f~~~P--dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp---~ 311 (462)
T 2ece_A 249 EN------------RMALELRPLHDP--TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP---E 311 (462)
T ss_dssp TE------------EEEEEEEECSST--TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC---G
T ss_pred CC------------CccceeEeeECC--CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccc---c
Confidence 11 23455545 77 6887777774 6688888877664322110 00000000000 0
Q ss_pred CCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc-cCcEEEEecCCC
Q 001279 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTSTT 282 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~-DG~I~lWd~~~~ 282 (1108)
.+...+. .....+.+. .++||++|+++.. .+.|.++|+.+.
T Consensus 312 -~~~~f~~-------~~~~pa~I~-lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 312 -ILKPFKA-------VPPLVTDID-ISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp -GGGGGTE-------ECCCCCCEE-ECTTSCEEEEEETTTTEEEEEECSST
T ss_pred -ccccccc-------CCCceeEEE-ECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 0000000 012345566 4699999988775 689999998643
No 253
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=97.78 E-value=1.4e-06 Score=79.51 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHh
Q 001279 1053 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1100 (1108)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~ 1100 (1108)
++...+..+-+|+.||||||+.|.+||++|+++|+.|.+.|++|.++|
T Consensus 44 eVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 44 EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999988775
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.74 E-value=0.013 Score=64.74 Aligned_cols=154 Identities=15% Similarity=0.106 Sum_probs=97.3
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeC-CC-------------------CCCEEEEEEeeCCCEEEEEeC
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PS-------------------QLPYKNLEFLQNQGFLISITN 96 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~-~h-------------------~~~V~~l~fs~d~~~L~S~s~ 96 (1108)
.+..+++++++.++.++..+++|..|+.++....... .. ......|++.++.+.|+.+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 4677899999998889999999999998764443211 00 125788999984456766666
Q ss_pred CCcEEEEEcCCCeeeeeec-----CCCCeeEEEEec-CCCEEEEEeCC----------------CcEEEEEEecCCCeee
Q 001279 97 DNEIQVWSLESRSLACCLK-----WESNITAFSVIS-GSHFMYIGDEN----------------GLMSVIKYDADEGKLF 154 (1108)
Q Consensus 97 d~~I~vWd~~s~~~~~~~~-----~~~~Itsl~~~~-~~~~l~vg~~d----------------g~V~vw~~d~~~~~l~ 154 (1108)
.+.|..+|..++....... .......+++++ ++++ ++++.. ..-.|+.++...+.+.
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l-~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIV-YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCE-EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEE-EEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 6668999987664322211 113467899999 7764 444322 1124566665445443
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEE-ECCCeEEEEEccC
Q 001279 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSE 209 (1108)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~dg~V~lWdl~~ 209 (1108)
.. ... . .....|+++| ++..|+++ +.++.|.+|++..
T Consensus 179 ~~---~~~-~------------~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 179 LL---LKE-L------------HVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EE---EEE-E------------SCCCEEEECT--TSSEEEEEEGGGTEEEEEESSS
T ss_pred Ee---ccC-C------------ccCcceEECC--CCCEEEEEeCCCCeEEEEECCC
Confidence 21 110 0 3356788977 67766666 4568899999875
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.73 E-value=0.0063 Score=74.71 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCe------------eEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001279 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNI------------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 88 ~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~I------------tsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~ 155 (1108)
+..|+.++.++.|..+|..+++.+..+...... ..+++ .+..+++++.+|.|+. +|..+|++.-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~a--lD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIA--LDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEE--EETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEE--EECCCCCEee
Confidence 467888888999999999999998887543211 11222 3568899999996644 5555677663
Q ss_pred eceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC------CCeEEEEEccCCeEEEEeC
Q 001279 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~lWdl~~~~~~~~~~ 217 (1108)
++..... .....+...|.-.+.+++++.. +|.|..||..+++.++.+.
T Consensus 142 ---~~~~~~~-----------~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 142 ---SQQTTDP-----------AKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ---EEECSCT-----------TSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ---eeccCCC-----------CCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 2321100 0000011111111334666654 5899999999999987653
No 256
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.72 E-value=3.9e-05 Score=61.12 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHh
Q 001279 1054 ASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1100 (1108)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~ 1100 (1108)
+-..+..+=+++.||||||+.|.+||++|+..|+.|..-|++|-++|
T Consensus 14 vk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 14 TVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34788889999999999999999999999999999999999998886
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.72 E-value=0.0045 Score=76.05 Aligned_cols=188 Identities=7% Similarity=0.002 Sum_probs=102.3
Q ss_pred ccCCCCcEEEEEecCC-------------------cEEEEeCCCCceeeEeeeccc-cceeeccCCCCCeEEEEEEeCCC
Q 001279 490 KCHSVDRVYLAGYHDG-------------------SVRIWDATYPVFKLICALDAE-VQGIEVAGSRAPVSTLSFCFINS 549 (1108)
Q Consensus 490 ~~s~~~~llatgs~DG-------------------tVriWd~~~~~l~~~~~l~~~-~~~~~l~~h~~~Vt~lafs~d~~ 549 (1108)
++.+...++..+..++ +|.-+|..++.....+..... .-.. ....++....+..+++
T Consensus 236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~---~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF---TATQQITLAELNIDGK 312 (668)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC---CCCSCEEEEEEEETTE
T ss_pred EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc---cCCCCcEEEEeccCCc
Confidence 5666666777777665 389999999987654443210 0000 0113344445555775
Q ss_pred ---eEEEEecCceEEEEEecCCCCCcccccccc---------Ccccee--ecccCCcceEEEEEeecCc-C-EEEEEEcC
Q 001279 550 ---SLAVGNEFGLVYIYNLNGSLDAKNFLFVLE---------TKSEVH--ALPEGKISLCRAVFSLVNS-P-VRALQFTS 613 (1108)
Q Consensus 550 ---~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~---------~~~~~~--~~~~~~g~~~~~~~~~h~~-~-Vtslafsp 613 (1108)
.++.++.+|.+.++|..+...-....+... +...+. .... .+-. ...+-...+ . -..++|+|
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~-~~~~-~~~~p~~~G~~~w~~~a~dp 390 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY-EKEP-IVMWPSPFGAHNWHSMSFNP 390 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC-SSSC-EEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc-cCCe-eEECCCCccccCCCcceECC
Confidence 688899999999998766532111111100 000000 0000 0000 000000000 0 01256666
Q ss_pred CCCEEEEE------------------------------------eCCCeEEEEEccCceEEEEeecCCCCCCceEEEEee
Q 001279 614 SGAKLAVG------------------------------------FECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1108)
Q Consensus 614 dg~~LavG------------------------------------s~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs 657 (1108)
+..++.+. ..+|.|.-||+.+++++++.... .++....+.
T Consensus 391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~ 466 (668)
T 1kv9_A 391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLS 466 (668)
T ss_dssp TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEE
T ss_pred CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeE
Confidence 65554431 23488999999999999876541 122212222
Q ss_pred ecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 658 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 658 ~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
..+.+||+++.|+.|++||..+|+++-..
T Consensus 467 ----------------------t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 467 ----------------------TAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp ----------------------ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ----------------------eCCCEEEEECCcccchhhhhhcChhheEe
Confidence 12678999999999999999999988544
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.71 E-value=0.014 Score=70.12 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=69.6
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeeeeeecCCCC------------eeEEEEecCCCE----EEEEeCCCcEEEEEEecC
Q 001279 88 QGFLISITN-DNEIQVWSL-ESRSLACCLKWESN------------ITAFSVISGSHF----MYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 88 ~~~L~S~s~-d~~I~vWd~-~s~~~~~~~~~~~~------------Itsl~~~~~~~~----l~vg~~dg~V~vw~~d~~ 149 (1108)
+..|+.++. ++.|.-+|. .+++.+..+..... ...+++.|.+.. +++++.++.+ +-+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l--~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNV--AALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEE--EEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEE--EEEECC
Confidence 467777777 899999999 89999887754322 123455444444 8999999954 556666
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEecccC-CCCCEEEEEEC------CCeEEEEEccCCeEEEEeC
Q 001279 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN-SSGNRVLIAYE------NALVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~-~~~~~ll~~~~------dg~V~lWdl~~~~~~~~~~ 217 (1108)
+|++.-. +.+..+.. + ..+...|. .++ +++++.. +|.|+-+|..+++.++.+.
T Consensus 140 TG~~~W~-~~~~~~~~----~---------~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 140 TGETVWK-VENSDIKV----G---------STLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp TCCEEEE-EECCCGGG----T---------CBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCCEEEe-ecCCCCCc----c---------ceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 6777632 22222110 0 00011111 133 4666663 8999999999999887653
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.65 E-value=0.0025 Score=67.02 Aligned_cols=172 Identities=10% Similarity=0.051 Sum_probs=109.4
Q ss_pred ceeeeeeCCCCCc--eEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCE--EEEEEeeCCCEEEEE-eCCCcE
Q 001279 26 LRIAVHYGIPATA--SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPY--KNLEFLQNQGFLISI-TNDNEI 100 (1108)
Q Consensus 26 ~~~~~~~G~~~~i--s~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V--~~l~fs~d~~~L~S~-s~d~~I 100 (1108)
+++...|.|+... --|.|+ ++.+..+.+.+|.|+++|..+.+++... -...+ ..+.+.. ..|..+ -.++.+
T Consensus 43 ~~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v 118 (268)
T 3nok_A 43 AHIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG--ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS--SCEEEEESSSCEE
T ss_pred eEEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC--CEEEEEEccCCEE
Confidence 3566777777776 568887 3566666677789999999766554322 11222 3355543 344444 468999
Q ss_pred EEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 101 QVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 101 ~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
.++|..+.+++..+.....-..++ ++++.|++++.++.| +.+|..+.+.... ..+..+. + ....+.
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l--~~iDp~T~~v~~~-I~V~~~g--~-------~v~~lN 184 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTML--TFHEPDGFALVGA-VQVKLRG--Q-------PVELIN 184 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEE--EEECTTTCCEEEE-EECEETT--E-------ECCCEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEE--EEEcCCCCeEEEE-EEeCCCC--c-------cccccc
Confidence 999999999999887665444444 567889988877755 5555655555532 2222111 0 013456
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~ 218 (1108)
.+.| . +|..++..+.+..|.+.|..+++++.....
T Consensus 185 eLe~--~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 185 ELEC--A-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEEE--E-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred ccEE--e-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 6777 3 565444445688999999999998776543
No 260
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.65 E-value=0.00089 Score=78.68 Aligned_cols=214 Identities=13% Similarity=0.113 Sum_probs=128.2
Q ss_pred CCCCEEEEEECC-CcEEEEecCCcceEE--eCCCCCCEEEEEE-e-eCCCEEEEEe------------------CCCcEE
Q 001279 45 HIQRLLAIATLD-GRIKVIGGDGIEGLL--ISPSQLPYKNLEF-L-QNQGFLISIT------------------NDNEIQ 101 (1108)
Q Consensus 45 p~~~~LA~Gs~d-G~I~iw~~~~~~~~~--~~~h~~~V~~l~f-s-~d~~~L~S~s------------------~d~~I~ 101 (1108)
+||++|.+...+ ++|.+.|++..++.- ..+.......++| + |++++++..+ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 489999887765 679999998877543 5555556889998 5 9999998885 245799
Q ss_pred EEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCC---------------cEEEEEEec-----CCCeeeee-c-ee
Q 001279 102 VWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---------------LMSVIKYDA-----DEGKLFQL-P-YN 159 (1108)
Q Consensus 102 vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg---------------~V~vw~~d~-----~~~~l~~~-~-~~ 159 (1108)
+.|.++.+++....-.+....++++|+++++++.+.+. .|.|.++.. ..|+.... . --
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999999988886555667788999999999998664 122322211 00000000 0 00
Q ss_pred eccccc-ccc-c-CCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCC
Q 001279 160 ISADAL-SEK-A-GFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1108)
Q Consensus 160 i~~~~~-~~~-~-~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1108)
|..... .+. . ..+ -.....++.++| ||++++++. .+.+|.++|+.+.+.. ..+. +.....+.
T Consensus 259 ID~~~~~~~~~~~~Ip--vg~~PhGv~~sP--DGk~v~V~~~~s~~VsVid~~~~~~~-~~~~--l~~~~~v~------- 324 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIP--IANNPHGCNMAP--DKKHLCVAGKLSPTVTVLDVTRFDAV-FYEN--ADPRSAVV------- 324 (595)
T ss_dssp EECSGGGCCSSEEEEE--EESSCCCEEECT--TSSEEEEECTTSSBEEEEEGGGHHHH-HHSC--CCGGGGEE-------
T ss_pred EeCcccCCceeEEEEe--cCCCceEEEEcC--CCCEEEEeCCCCCeEEEEECcccccc-cccc--cCcccceE-------
Confidence 000000 000 0 000 013467889988 788776655 5679999999865310 0000 00000000
Q ss_pred CCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
.+..-......++| +++|...++...|+.|.+||+..
T Consensus 325 --------~~v~vG~gP~h~aF-~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 325 --------AEPELGLGPLHTAF-DGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp --------ECCBCCSCEEEEEE-CTTSEEEEEETTTTEEEEEEHHH
T ss_pred --------EEcCCCCCcceEEE-CCCCeEEEEEecCCcEEEEEhhH
Confidence 00000223455675 49995445667899999999865
No 261
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.64 E-value=0.23 Score=59.97 Aligned_cols=198 Identities=14% Similarity=0.018 Sum_probs=121.1
Q ss_pred CCceEEEEcCCCCEEEEEE-CCCcEEEEecCCcceEEeCC-CCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCeeee
Q 001279 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLAC 112 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~~~~ 112 (1108)
..+..|+|++....|.... .+++|+.++.++........ .-.....|++.+.++.|+.+.. .+.|.+-++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 3578999999777666554 56899999987654432222 2245678999887677766654 6779999987654322
Q ss_pred ee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 113 ~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
.. ..-.....++++|...+|+..+....-+|+..+.+....... +. . .....+|++.+ ++.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l---~~-~------------~~~P~GlalD~--~~~ 178 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL---VP-N------------VGRANGLTIDY--AKR 178 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---EC-S------------CSSEEEEEEET--TTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE---EC-C------------CCCcceEEEcc--ccC
Confidence 22 233467899999988888888743222555554432222211 11 1 15688999977 455
Q ss_pred EEEEEE-CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001279 192 RVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1108)
Q Consensus 192 ~ll~~~-~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1108)
+|+.+- ..+.|..+|+.......+... .....+++.+ . +..+++-..
T Consensus 179 ~LY~aD~~~~~I~~~d~dG~~~~v~~~~------------------------------l~~P~glav~-~-~~ly~tD~~ 226 (628)
T 4a0p_A 179 RLYWTDLDTNLIESSNMLGLNREVIADD------------------------------LPHPFGLTQY-Q-DYIYWTDWS 226 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEEC------------------------------CSCEEEEEEE-T-TEEEEEETT
T ss_pred EEEEEECCCCEEEEEcCCCCceEEeecc------------------------------CCCceEEEEE-C-CEEEEecCC
Confidence 566655 456888888876533211111 1233456644 2 444444445
Q ss_pred cCcEEEEecCCCC
Q 001279 271 DGDILLWNTSTTA 283 (1108)
Q Consensus 271 DG~I~lWd~~~~~ 283 (1108)
.+.|...|..++.
T Consensus 227 ~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 227 RRSIERANKTSGQ 239 (628)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCEEEEEECCCCC
Confidence 7788888876654
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.62 E-value=0.031 Score=67.03 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=68.3
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeeeeeecCCCC--e----------eEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001279 88 QGFLISITN-DNEIQVWSL-ESRSLACCLKWESN--I----------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1108)
Q Consensus 88 ~~~L~S~s~-d~~I~vWd~-~s~~~~~~~~~~~~--I----------tsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l 153 (1108)
+..|+.++. ++.|.-+|. .+++.+..+..... + ..+++ .+..+++++.++.+ +-+|..++++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l--~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHL--LALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEE--EEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEE--EEEECCCCCE
Confidence 466777777 889999999 89999887754321 0 11222 36688999999965 4455556776
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC------CCeEEEEEccCCeEEEEeC
Q 001279 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVGG 217 (1108)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~lWdl~~~~~~~~~~ 217 (1108)
.-. +.+..+.. . ..+...|.-.+.+++++.. +|.|..+|..+++.++.+.
T Consensus 138 ~W~-~~~~~~~~-----------~--~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 138 NWE-VEVCDPKV-----------G--STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEE-EECCCGGG-----------T--CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEE-ecCCCCCc-----------c--ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 632 22222110 0 0011112111234777765 7999999999999887653
No 263
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.61 E-value=0.015 Score=61.50 Aligned_cols=215 Identities=16% Similarity=0.123 Sum_probs=132.1
Q ss_pred eCCCCCceEEEEcCCCC-EEEEEECCCcEEEEecCCcceEEe-CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 32 YGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~-~LA~Gs~dG~I~iw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
-|+...++.++|+|++. +.|+...++.|..+|.++...... .........|++.+++.++++.-.++.+.++++....
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 48888999999999765 556688889999999984432222 2333578899999888766665567789999876554
Q ss_pred e---eeeec-------CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccc-cccccCCCCCCCCC
Q 001279 110 L---ACCLK-------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA-LSEKAGFPLLSHQP 178 (1108)
Q Consensus 110 ~---~~~~~-------~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~-~~~~~~~~~~~~~~ 178 (1108)
. +.... .......++++|.++.|+++.+.....||.++...... ..++..+. +... .....
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~---~l~i~~~~~~~~~-----~~~~d 174 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN---ELHISKDKALQRQ-----FTLDD 174 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS---CCEEEECHHHHHT-----CCSSC
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC---ceeeecchhhccc-----cccCC
Confidence 2 22221 22346899999999999999888777888887210000 01121110 0000 01134
Q ss_pred eEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEee
Q 001279 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1108)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1108)
+.+++++|. .+..++....+..+.++|.... ++....-.. +..+ ....-..-..+++.
T Consensus 175 ~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~---------------g~~~-----l~~~~~qpEGia~d 232 (255)
T 3qqz_A 175 VSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTK---------------GSRG-----LSHNIKQAEGVAMD 232 (255)
T ss_dssp CCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECST---------------TGGG-----CSSCCCSEEEEEEC
T ss_pred ceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCC---------------ccCC-----cccccCCCCeeEEC
Confidence 789999996 5665666667778999997765 443321100 0000 00002345678865
Q ss_pred cCCCCEEEEEEccCcEEEEe
Q 001279 259 SSSGSILAVGYIDGDILLWN 278 (1108)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd 278 (1108)
++|+ |+..+.-+-++.+.
T Consensus 233 -~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 233 -ASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp -TTCC-EEEEETTTEEEEEE
T ss_pred -CCCC-EEEEcCCceEEEEE
Confidence 8997 55556666555543
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.58 E-value=0.094 Score=62.93 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=41.8
Q ss_pred CCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcc
Q 001279 624 CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1108)
Q Consensus 624 dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1108)
+|.|.-||+.+++++++..... ++..-... ..+.++|+++.|+.|++||.++|+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~----------------------tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL----PLWAGVLA----------------------TAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS----CCCSCCEE----------------------ETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecCCC----CCcccceE----------------------eCCCEEEEECCCCcEEEEECCCCC
Confidence 6889999999999887765411 11100000 126788999999999999999999
Q ss_pred eecCC
Q 001279 704 MISSS 708 (1108)
Q Consensus 704 ~l~~~ 708 (1108)
++-+.
T Consensus 519 ~lW~~ 523 (582)
T 1flg_A 519 ELWKF 523 (582)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88543
No 265
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.54 E-value=0.0026 Score=74.80 Aligned_cols=162 Identities=9% Similarity=-0.006 Sum_probs=111.4
Q ss_pred CCceEEEE-c-CCCCEEEEEEC------------------CCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe
Q 001279 36 ATASILAF-D-HIQRLLAIATL------------------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT 95 (1108)
Q Consensus 36 ~~is~la~-s-p~~~~LA~Gs~------------------dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s 95 (1108)
..+..+++ + |+++++.+++. ++.+.++|.++.++.....=.+.-..++++|+|+++++.+
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~ 213 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 213 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEe
Confidence 56788898 5 99999999862 3678899998877664332212346778999999999988
Q ss_pred CCC--------------------------------------cEEEEEcCC--Cee-eeeecCCCCeeEEEEecCCCEEEE
Q 001279 96 NDN--------------------------------------EIQVWSLES--RSL-ACCLKWESNITAFSVISGSHFMYI 134 (1108)
Q Consensus 96 ~d~--------------------------------------~I~vWd~~s--~~~-~~~~~~~~~Itsl~~~~~~~~l~v 134 (1108)
.+. .|.|.|..+ +.. +..+.......++.++|+++++++
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 543 477788777 444 455555567788999999999888
Q ss_pred Ee-CCCcEEEEEEecC----CCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC
Q 001279 135 GD-ENGLMSVIKYDAD----EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 135 g~-~dg~V~vw~~d~~----~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
++ .+..|.|++++.. ++++... ..+.. . ..-......++|+| +|...++.+-|+.|.+||+..
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~-~~v~~--------~-v~vG~gP~h~aF~~--dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPR-SAVVA--------E-PELGLGPLHTAFDG--RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGG-GGEEE--------C-CBCCSCEEEEEECT--TSEEEEEETTTTEEEEEEHHH
T ss_pred eCCCCCeEEEEECcccccccccccCcc-cceEE--------E-cCCCCCcceEEECC--CCeEEEEEecCCcEEEEEhhH
Confidence 87 4788989888742 1111100 00000 0 00114589999988 675456788899999999987
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.42 E-value=0.05 Score=65.22 Aligned_cols=60 Identities=8% Similarity=0.018 Sum_probs=41.3
Q ss_pred CCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCc
Q 001279 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1108)
Q Consensus 623 ~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g 702 (1108)
.+|.|..||..+++++.+...- .++.+..+. ..+.++++++.|+.|++||..+|
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~----------------------t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLY----------------------TKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES----SCCCSBCEE----------------------ETTTEEEEECTTSEEEEEETTTC
T ss_pred CCCeEEEEECCCCCEEEEecCC----CCccceeEE----------------------ECCCEEEEEcCCCeEEEEECCCC
Confidence 3578999999998888765431 111111111 12567888999999999999999
Q ss_pred ceecCC
Q 001279 703 NMISSS 708 (1108)
Q Consensus 703 ~~l~~~ 708 (1108)
+++-..
T Consensus 496 ~~lw~~ 501 (571)
T 2ad6_A 496 KELWNF 501 (571)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 988543
No 267
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.35 E-value=0.00015 Score=58.50 Aligned_cols=57 Identities=14% Similarity=0.363 Sum_probs=45.5
Q ss_pred CCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHH
Q 001279 1038 LRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV 1097 (1108)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~ 1097 (1108)
...+..|+.. -.++-..+..+=+++.||||||+.|.+||++|+..|..|..-|+.|-
T Consensus 8 ~d~l~~vq~~---l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~ 64 (65)
T 1gl2_A 8 NDRVRNLQSE---VEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 64 (65)
T ss_dssp --CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556555 33445889999999999999999999999999999999999998774
No 268
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.32 E-value=0.038 Score=58.96 Aligned_cols=183 Identities=11% Similarity=0.022 Sum_probs=111.1
Q ss_pred CEEEEEECCCcEEEEecCCcceE------EeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCeeeeeecC-CCC
Q 001279 48 RLLAIATLDGRIKVIGGDGIEGL------LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKW-ESN 119 (1108)
Q Consensus 48 ~~LA~Gs~dG~I~iw~~~~~~~~------~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~~~~~~~~-~~~ 119 (1108)
.+|..+.. +.|+.+++++.... ...........++|.++++.|+.+.. .+.|.++|..++........ ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45556554 57888988765321 11111235679999997777766654 67899999987654433322 256
Q ss_pred eeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC
Q 001279 120 ITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE 198 (1108)
Q Consensus 120 Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~ 198 (1108)
...+++++++..|++++. .+.|.+++++....... +... ......++++| ++.+|+.+..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~-----~~~~------------~~~P~~i~vd~--~~g~lyv~~~ 141 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-----FDTG------------LVNPRGIVTDP--VRGNLYWTDW 141 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----ECSS------------CSSEEEEEEET--TTTEEEEEEC
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE-----EECC------------CCCccEEEEee--CCCEEEEEEC
Confidence 889999998888887765 56666655543211111 1111 13578999988 3444666654
Q ss_pred ---CCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcE
Q 001279 199 ---NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDI 274 (1108)
Q Consensus 199 ---dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I 274 (1108)
.+.|..++++......+... .......+++. +++..|+.+. ..+.|
T Consensus 142 ~~~~~~I~~~~~dg~~~~~~~~~-----------------------------~~~~P~gia~d-~~~~~lyv~d~~~~~I 191 (267)
T 1npe_A 142 NRDNPKIETSHMDGTNRRILAQD-----------------------------NLGLPNGLTFD-AFSSQLCWVDAGTHRA 191 (267)
T ss_dssp CSSSCEEEEEETTSCCCEEEECT-----------------------------TCSCEEEEEEE-TTTTEEEEEETTTTEE
T ss_pred CCCCcEEEEEecCCCCcEEEEEC-----------------------------CCCCCcEEEEc-CCCCEEEEEECCCCEE
Confidence 36777888765432211100 02345678875 8777666555 45788
Q ss_pred EEEecC
Q 001279 275 LLWNTS 280 (1108)
Q Consensus 275 ~lWd~~ 280 (1108)
..++..
T Consensus 192 ~~~~~~ 197 (267)
T 1npe_A 192 ECLNPA 197 (267)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 888875
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.32 E-value=0.0064 Score=75.87 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=73.1
Q ss_pred CceEEEEc-CCCCEEEEEECC-C----cEEEEecCCc-ceEEeCCCCCCEEEEEEeeCCCEEEEEeCC-----CcEEEEE
Q 001279 37 TASILAFD-HIQRLLAIATLD-G----RIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITND-----NEIQVWS 104 (1108)
Q Consensus 37 ~is~la~s-p~~~~LA~Gs~d-G----~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-----~~I~vWd 104 (1108)
.+...+|| |||++||.+... | +|+++|+++. +.+.. .-......+.|+||+..|+.+..+ ..|.+|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 56789999 999999977653 3 4999999876 53210 001124578899999888877765 3588899
Q ss_pred cCCCeee--eee--cCCCCeeEEEEecCCCEEEEEeCC-CcEEEEEEec
Q 001279 105 LESRSLA--CCL--KWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDA 148 (1108)
Q Consensus 105 ~~s~~~~--~~~--~~~~~Itsl~~~~~~~~l~vg~~d-g~V~vw~~d~ 148 (1108)
+.++... ..+ ....-...+.++|++++|+....+ +.-.||.++.
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 8876421 122 223346788999999988876532 3334454444
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.30 E-value=0.017 Score=63.68 Aligned_cols=198 Identities=10% Similarity=0.024 Sum_probs=114.5
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCC----C-CCCEEEEEEee-CCCEEEEEeC--------------
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP----S-QLPYKNLEFLQ-NQGFLISITN-------------- 96 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~----h-~~~V~~l~fs~-d~~~L~S~s~-------------- 96 (1108)
.+..++++++...|.++...+.|..++.++.....+.. . ......+++.+ +|...++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 46789999844456666666668888877543322211 1 12467899999 8866665432
Q ss_pred ---CCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCC-CeeeeeceeecccccccccCC
Q 001279 97 ---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADE-GKLFQLPYNISADALSEKAGF 171 (1108)
Q Consensus 97 ---d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~-~~l~~~~~~i~~~~~~~~~~~ 171 (1108)
++.|..||..+++.......-.....+++++++++|+++.. .+.|++++++... +.... +...
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~----~~~~-------- 228 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV----LVKI-------- 228 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE----EEEC--------
T ss_pred cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce----EEeC--------
Confidence 36688999887765433322234567899999998888854 5766666654311 11110 1000
Q ss_pred CCCCCCCeEEEecccCCCCCEEEEEEC----------CCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccC
Q 001279 172 PLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1108)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~----------dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1108)
.+ ...+++.+ +|.+.++... .+.|..+|.. ++.+..+... .+.
T Consensus 229 ----~g-P~gi~~d~--~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~------------~g~------- 281 (322)
T 2fp8_A 229 ----PN-PGNIKRNA--DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP------------PPF------- 281 (322)
T ss_dssp ----SS-EEEEEECT--TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC------------TTT-------
T ss_pred ----CC-CCCeEECC--CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC------------CCC-------
Confidence 03 67788866 6774444433 3667788875 4444333210 000
Q ss_pred cCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
.-..++++++ .+|...++...++.|..+++..
T Consensus 282 ------~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 282 ------AGEHFEQIQE--HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ------TTSCCCEEEE--ETTEEEEECSSCSEEEEEEC--
T ss_pred ------ccccceEEEE--eCCEEEEeecCCCceEEEeccc
Confidence 0234666764 4566555555778899988753
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.23 E-value=0.028 Score=61.54 Aligned_cols=211 Identities=13% Similarity=0.092 Sum_probs=118.8
Q ss_pred ceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCC--cEEEE
Q 001279 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN--EIQVW 103 (1108)
Q Consensus 26 ~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~--~I~vW 103 (1108)
.+....+........++++|+++++++-..+++|..|+.++...... .-......++|.+++..+++....+ .|..+
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred ceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 34455555557788999999999777777889999999876533322 2234688999999988655554333 47777
Q ss_pred EcCCCeeeeeecCC--CCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 104 SLESRSLACCLKWE--SNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 104 d~~s~~~~~~~~~~--~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
|..++++....... .....+++.++ ..+++.+ .+|. ||.++...+.... +..... ... ...........
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~--i~~~d~~~~~~~v--~~~~~~-~~~--~~~~~~~~~pn 172 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGA--IWLIDVVQPSGSI--WLEHPM-LAR--SNSESVFPAAN 172 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTE--EEEEETTTTEEEE--EEECGG-GSC--SSTTCCSCSEE
T ss_pred cCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCe--EEEEeCCCCcEeE--EEECCc-ccc--ccccCCCCcCC
Confidence 87787764433222 22344454444 4455555 4774 5666654332110 101100 000 00001113455
Q ss_pred EEecccCCCCCEEEEE-ECCCeEEEEEccC-CeEE--EEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEE
Q 001279 181 GVLPHPNSSGNRVLIA-YENALVILWDVSE-AQII--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~-~~dg~V~lWdl~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1108)
.| +| ++..|+++ ...+.|..||+.. ++.. ..+.. ......++
T Consensus 173 gi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------------------------------~~~P~gi~ 218 (306)
T 2p4o_A 173 GL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------------------------------QTNIDDFA 218 (306)
T ss_dssp EE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------------------------------SCCCSSEE
T ss_pred Cc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------------------------------cCCCCCeE
Confidence 66 55 45555554 4567899999875 3210 00000 01233466
Q ss_pred eecCCCCEEEEEEccCcEEEEecC
Q 001279 257 WASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
. .++|...++....+.|.+++..
T Consensus 219 v-d~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 219 F-DVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp E-BTTCCEEEECBTTCCEEEECTT
T ss_pred E-CCCCCEEEEeCCCCeEEEECCC
Confidence 4 4889877777778889998864
No 272
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.20 E-value=0.014 Score=61.40 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=105.2
Q ss_pred eEEeCCCCC--CEEEEEEeeCCCEEEEEeCCC--cEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC-CCcEEE
Q 001279 69 GLLISPSQL--PYKNLEFLQNQGFLISITNDN--EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSV 143 (1108)
Q Consensus 69 ~~~~~~h~~--~V~~l~fs~d~~~L~S~s~d~--~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~-dg~V~v 143 (1108)
++-..+|.. -...|.|+ ++...++.+.++ .|++.|+.+++++.............+.+.++.|++... ++.+
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v-- 109 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG-- 109 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE--
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE--
Confidence 344445654 35889998 666666666655 899999999999998877766655445555777777764 5655
Q ss_pred EEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccc
Q 001279 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQL 223 (1108)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~ 223 (1108)
|.+|..+.++... +..+.+ + .++++ ++.+|+.+..++.|.++|..+.+++.......
T Consensus 110 ~v~D~~t~~~~~t-i~~~~e-------------G--~glt~----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~--- 166 (262)
T 3nol_A 110 FVWNIRNLRQVRS-FNYDGE-------------G--WGLTH----NDQYLIMSDGTPVLRFLDPESLTPVRTITVTA--- 166 (262)
T ss_dssp EEEETTTCCEEEE-EECSSC-------------C--CCEEE----CSSCEEECCSSSEEEEECTTTCSEEEEEECEE---
T ss_pred EEEECccCcEEEE-EECCCC-------------c--eEEec----CCCEEEEECCCCeEEEEcCCCCeEEEEEEecc---
Confidence 4555555555543 222211 1 23344 56667777778899999999987755432100
Q ss_pred cccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
. + ..-..+..+.|. +|...+....++.|.+.|..+++
T Consensus 167 ~--------------g-------~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 167 H--------------G-------EELPELNELEWV--DGEIFANVWQTNKIVRIDPETGK 203 (262)
T ss_dssp T--------------T-------EECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCB
T ss_pred C--------------C-------ccccccceeEEE--CCEEEEEEccCCeEEEEECCCCc
Confidence 0 0 001234457775 67666666678899999998874
No 273
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.16 E-value=0.012 Score=61.83 Aligned_cols=166 Identities=17% Similarity=0.104 Sum_probs=105.7
Q ss_pred ceEEeCCCCC--CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEE
Q 001279 68 EGLLISPSQL--PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVI 144 (1108)
Q Consensus 68 ~~~~~~~h~~--~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw 144 (1108)
+++-..+|.. -...|.|+. +...++.+.++.|+++|+++++++... .........+.+.++.|++.. .++.+ |
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v--~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLL--F 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEE--E
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEE--E
Confidence 3444445544 358899974 456677777889999999999998887 666655544444566666665 45644 5
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCccccc
Q 001279 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLK 224 (1108)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~ 224 (1108)
.+|..+.++... +..+. .-.++++ ++.+|+.+..++.|.++|..+.+++....-.. .
T Consensus 120 V~D~~Tl~~~~t-i~~~~---------------eGwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~---~ 176 (268)
T 3nok_A 120 TWSGMPPQRERT-TRYSG---------------EGWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL---R 176 (268)
T ss_dssp EEETTTTEEEEE-EECSS---------------CCCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEE---T
T ss_pred EEECCcCcEEEE-EeCCC---------------ceeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC---C
Confidence 555555666543 22221 1134444 57778888889999999999987765432100 0
Q ss_pred ccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
+ ..-..+..+.|. +|...+....++.|.+-|..+++
T Consensus 177 --------------g-------~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 177 --------------G-------QPVELINELECA--NGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp --------------T-------EECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCB
T ss_pred --------------C-------cccccccccEEe--CCEEEEEECCCCeEEEEeCCCCc
Confidence 0 002245667775 77655555578899999998774
No 274
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.15 E-value=0.026 Score=59.95 Aligned_cols=166 Identities=12% Similarity=0.039 Sum_probs=101.3
Q ss_pred EEeCCCCC--CEEEEEEeeCCCEEEEEe-C--CCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeC-CCcEEE
Q 001279 70 LLISPSQL--PYKNLEFLQNQGFLISIT-N--DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSV 143 (1108)
Q Consensus 70 ~~~~~h~~--~V~~l~fs~d~~~L~S~s-~--d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~-dg~V~v 143 (1108)
+-..+|.. ....|.|++++ +|+.++ . ++.|.+.|+.+++.+..+..........+..+++.|+++.. ++.+.+
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFI 90 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred EEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEE
Confidence 33334553 36899999985 555544 3 57899999999999988765443333333334667777765 565545
Q ss_pred EEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccc
Q 001279 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQL 223 (1108)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~ 223 (1108)
+|..+.++... ++... ..-..+++ ++.+++++..++.|.++|..+.++.....-...
T Consensus 91 --iD~~t~~v~~~---i~~g~------------~~g~glt~----Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-- 147 (266)
T 2iwa_A 91 --YDRRTLSNIKN---FTHQM------------KDGWGLAT----DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-- 147 (266)
T ss_dssp --EETTTTEEEEE---EECCS------------SSCCEEEE----CSSSEEEECSSSEEEEECTTTCCEEEEEECEET--
T ss_pred --EECCCCcEEEE---EECCC------------CCeEEEEE----CCCEEEEECCCCeEEEEECCCCcEEEEEEECCC--
Confidence 55545555542 33110 11133444 566788877889999999999876544321000
Q ss_pred cccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
+ ..-..+..+.|. +|...+....++.|.+-|..+++
T Consensus 148 ---------------~-------~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 148 ---------------G-------HRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp ---------------T-------EECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCC
T ss_pred ---------------C-------cccccceeEEEE--CCEEEEecCCCCeEEEEECCCCc
Confidence 0 001235567765 67555555568899999998774
No 275
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.09 E-value=0.039 Score=57.46 Aligned_cols=167 Identities=11% Similarity=0.053 Sum_probs=106.6
Q ss_pred ceEEeCCCCC--CEEEEEEeeCCCEEEEEeCC--CcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEe-CCCcEE
Q 001279 68 EGLLISPSQL--PYKNLEFLQNQGFLISITND--NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMS 142 (1108)
Q Consensus 68 ~~~~~~~h~~--~V~~l~fs~d~~~L~S~s~d--~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~ 142 (1108)
+++...+|.. -...|.|++ +....|.+.. +.|++.|+.+++++.............+...++.|+... .++.+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v- 87 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG- 87 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE-
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE-
Confidence 4444456654 578999987 3555555554 489999999999999887776665555555567777665 45655
Q ss_pred EEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCccc
Q 001279 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1108)
Q Consensus 143 vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~ 222 (1108)
|.+|..+.++... +..+++ + .++++ ++.+|+++..++.|.++|..+.+++........
T Consensus 88 -~v~D~~tl~~~~t-i~~~~~-------------G--wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~- 145 (243)
T 3mbr_X 88 -FVYDLATLTPRAR-FRYPGE-------------G--WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG- 145 (243)
T ss_dssp -EEEETTTTEEEEE-EECSSC-------------C--CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEET-
T ss_pred -EEEECCcCcEEEE-EeCCCC-------------c--eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-
Confidence 4555555565543 222211 2 34444 566688888889999999999877554322000
Q ss_pred ccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCCC
Q 001279 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1108)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1108)
+ ..-..++-+.|. +|...+....+..|.+.|..+++
T Consensus 146 ----------------g-------~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 146 ----------------G-------RPLDNLNELEWV--NGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp ----------------T-------EECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCB
T ss_pred ----------------C-------cccccceeeEEe--CCEEEEEECCCCeEEEEECCCCC
Confidence 0 002345667765 67655555578889999998874
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.03 E-value=0.21 Score=54.81 Aligned_cols=200 Identities=13% Similarity=-0.038 Sum_probs=117.1
Q ss_pred CCCceEEEEcCCCCEEEEEE-CCCcEEEEecCC----cce-EEeCCCCCCEEEEEEeeCCCEEEEE-eCCCcEEEEEcCC
Q 001279 35 PATASILAFDHIQRLLAIAT-LDGRIKVIGGDG----IEG-LLISPSQLPYKNLEFLQNQGFLISI-TNDNEIQVWSLES 107 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~----~~~-~~~~~h~~~V~~l~fs~d~~~L~S~-s~d~~I~vWd~~s 107 (1108)
-..+..++|++.+..|.... .+++|+.++.++ ... ......-.....|++.+.++.|+.+ ...+.|.+.|...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578899999776655554 458999999876 222 2222222345789998765666555 4578899999886
Q ss_pred Ceeeeeec-CCCCeeEEEEecCCCEEEEEeCC--CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 108 RSLACCLK-WESNITAFSVISGSHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 108 ~~~~~~~~-~~~~Itsl~~~~~~~~l~vg~~d--g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
........ .-.....++++|.+.+|+..+.. +.|...+.+ +..... . +.. . .....+|++
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d---G~~~~~-~-~~~-~-----------~~~P~gla~ 171 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---GVDIYS-L-VTE-N-----------IQWPNGITL 171 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---SCCEEE-E-ECS-S-----------CSCEEEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC---CCCeEE-E-EEC-C-----------CCCceEEEE
Confidence 54433332 23567899999988888877754 445444433 222211 0 111 1 156889999
Q ss_pred ccCCCCCEEEEEE-CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC
Q 001279 185 HPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1108)
Q Consensus 185 ~P~~~~~~ll~~~-~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1108)
.| ++.+|+.+. ..+.|..+|++......+.... .......+++.. .+.
T Consensus 172 d~--~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~---------------------------~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 172 DL--LSGRLYWVDSKLHSISSIDVNGGNRKTILEDE---------------------------KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp ET--TTTEEEEEETTTTEEEEEETTSCSCEEEEECT---------------------------TTTSSEEEEEEE--TTE
T ss_pred ec--cCCEEEEEECCCCeEEEEecCCCceEEEeecC---------------------------CccCCcEEEEEE--CCE
Confidence 87 344565554 5568899998764322221100 002234566643 355
Q ss_pred EEEEEEccCcEEEEecCCC
Q 001279 264 ILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~~ 282 (1108)
.+++-...+.|..++..++
T Consensus 221 ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEEEETTTTEEEEEETTTC
T ss_pred EEEEECCCCeEEEEeCCCC
Confidence 5555556677888776544
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.02 E-value=0.12 Score=63.18 Aligned_cols=32 Identities=6% Similarity=-0.053 Sum_probs=25.0
Q ss_pred EEEEEcCCCCEEEEEeCC-----------CeEEEEEccCceEE
Q 001279 607 RALQFTSSGAKLAVGFEC-----------GRVAVLDMNLLSVL 638 (1108)
Q Consensus 607 tslafspdg~~LavGs~d-----------G~V~vwd~~~~~~~ 638 (1108)
.++++.|+++++++|+.+ ..+.+||..+.+..
T Consensus 459 ~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 459 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 455677899999999864 46899999887654
No 278
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.88 E-value=0.016 Score=63.76 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=106.5
Q ss_pred CCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC-CCCeeEEEE
Q 001279 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSV 125 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~-~~~Itsl~~ 125 (1108)
+..|.+|+.+|.|..|+..+........+...+..+.+.+++. |..++.++.|..+|.. ++.+..... ...+.++.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 5677789889999999988433333333444566666666654 6667778999999999 776655543 345667777
Q ss_pred ecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEE
Q 001279 126 ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1108)
Q Consensus 126 ~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lW 205 (1108)
++++. +++|+ +.|..++ .++... +...... ..+.++...+ ++. |.+++.++.|..+
T Consensus 185 d~~g~-l~v~t--~~l~~~d---~~g~~~---~~~~~~~------------~~~~~~~~~~--~g~-l~v~t~~~gl~~~ 240 (330)
T 3hxj_A 185 GKDGT-IYFGS--DKVYAIN---PDGTEK---WNFYAGY------------WTVTRPAISE--DGT-IYVTSLDGHLYAI 240 (330)
T ss_dssp CTTCC-EEEES--SSEEEEC---TTSCEE---EEECCSS------------CCCSCCEECT--TSC-EEEEETTTEEEEE
T ss_pred cCCCE-EEEEe--CEEEEEC---CCCcEE---EEEccCC------------cceeceEECC--CCe-EEEEcCCCeEEEE
Confidence 76666 55666 6565555 234433 2222111 3355556643 565 8888888888888
Q ss_pred EccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEec
Q 001279 206 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1108)
Q Consensus 206 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1108)
|.. ++........ ...+.+++. .++| .|..++.+|.|..+|.
T Consensus 241 ~~~-g~~~~~~~~~-----------------------------~~~~~~~~~-~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 241 NPD-GTEKWRFKTG-----------------------------KRIESSPVI-GNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp CTT-SCEEEEEECS-----------------------------SCCCSCCEE-CTTS-CEEEECTTCEEEEECT
T ss_pred CCC-CCEeEEeeCC-----------------------------CCccccceE-cCCC-eEEEecCCCCEEEECC
Confidence 754 4433332110 111222332 2445 5777888888999985
No 279
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.87 E-value=0.23 Score=54.46 Aligned_cols=189 Identities=12% Similarity=0.225 Sum_probs=116.3
Q ss_pred cCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeC----CCE--EEEEe--C--CCcEEEEEc--CCCeee
Q 001279 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQN----QGF--LISIT--N--DNEIQVWSL--ESRSLA 111 (1108)
Q Consensus 44 sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d----~~~--L~S~s--~--d~~I~vWd~--~s~~~~ 111 (1108)
+|...++..-...+-+.+||+++.++..+.. +.+..+..-|+ +.. |+.++ . +++|.++++ .++. +
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCCccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 4556665555567889999998887776643 56777776663 221 33333 3 578999977 4444 3
Q ss_pred eeec-------CC-CCeeEEEE--ecCCC--EEEEEeCCCcEEEEEEec-CCCee----eeeceeecccccccccCCCCC
Q 001279 112 CCLK-------WE-SNITAFSV--ISGSH--FMYIGDENGLMSVIKYDA-DEGKL----FQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 112 ~~~~-------~~-~~Itsl~~--~~~~~--~l~vg~~dg~V~vw~~d~-~~~~l----~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
.... .. ..+..+++ ++... |+++...+|.+..|.+.. ..+++ ++. +.+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~-f~lg------------- 179 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA-FKMN------------- 179 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE-EECS-------------
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE-ecCC-------------
Confidence 3331 11 45666777 66433 789999999998888754 22322 221 2222
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCCeEEEEEcc-----CCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCC
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS-----EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1108)
..+..+...+ ...+|+++-.+.-|..+|.+ +.+++...+.. .+ .
T Consensus 180 --sq~EgcvvDd--~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g--~l-------------------------~ 228 (355)
T 3amr_A 180 --SQTEGMAADD--EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR--HL-------------------------T 228 (355)
T ss_dssp --SCEEEEEEET--TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSS--SB-------------------------C
T ss_pred --CCcceEEEcC--CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCC--cc-------------------------c
Confidence 4577888865 45569999999776666644 23444443210 00 3
Q ss_pred CceeEEEee-cCCCC-EEEEEE-ccCcEEEEecC
Q 001279 250 KEISALCWA-SSSGS-ILAVGY-IDGDILLWNTS 280 (1108)
Q Consensus 250 ~~Vtsl~w~-spdg~-~l~sg~-~DG~I~lWd~~ 280 (1108)
..+..++.. .++|+ +|++.+ .++++.+||..
T Consensus 229 aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 229 RDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp SCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 356777643 45666 666666 67799999985
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.86 E-value=0.29 Score=54.47 Aligned_cols=159 Identities=14% Similarity=0.018 Sum_probs=99.3
Q ss_pred CCceEEEEcCCCCEEEEEE-CCCcEEEEecCCcceEE-eCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeee
Q 001279 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~ 112 (1108)
..+..++|++....|.... ..++|+.++.++..... ....-.....|++.+.++.|+.+. ..+.|.+.+........
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478899998766665554 56889999987664332 222223457899998666665554 56789999987654333
Q ss_pred eec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 113 CLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 113 ~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
... .-.....++++|.+.+|+..+....-+|+.++.+...... +-... .....+|++.|. +.
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~----~~~~~-----------~~~PnGla~d~~--~~ 215 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI----IADTH-----------LFWPNGLTIDYA--GR 215 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE----SCCSS-----------CSCEEEEEEETT--TT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE----EEECC-----------CCCcceEEEeCC--CC
Confidence 332 2356789999998888887775432244555433222111 11111 156899999874 44
Q ss_pred EEEEEE-CCCeEEEEEccCCe
Q 001279 192 RVLIAY-ENALVILWDVSEAQ 211 (1108)
Q Consensus 192 ~ll~~~-~dg~V~lWdl~~~~ 211 (1108)
+|+.+- ..+.|..+|++...
T Consensus 216 ~lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 216 RMYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCS
T ss_pred EEEEEECCCCEEEEEeCCCCc
Confidence 455554 45688888887643
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.86 E-value=0.18 Score=57.14 Aligned_cols=199 Identities=14% Similarity=-0.013 Sum_probs=118.5
Q ss_pred CCceEEEEcCCCCEEEEE-ECCCcEEEEecCCcceEE-eCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeee
Q 001279 36 ATASILAFDHIQRLLAIA-TLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~G-s~dG~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~ 112 (1108)
..+..++|++....|... ...++|+.|+.++..... ....-.....|++.+.++.|+.+. ..+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 457789999866655554 456899999988765432 222223456788988666665554 46789999987654333
Q ss_pred eec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 113 CLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 113 ~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
... .-.....++++|.+.+|+..+....-+|+.++.+....... +... .....+|+++|. +.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~---~~~~------------~~~PnGlavd~~--~~ 258 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII---ADTH------------LFWPNGLTIDYA--GR 258 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECSS------------CSCEEEEEEEGG--GT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE---EECC------------CCCeeeEEEeCC--CC
Confidence 332 22567899999988888888754322455555432222110 1111 145889999874 34
Q ss_pred EEEEE-ECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001279 192 RVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1108)
Q Consensus 192 ~ll~~-~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1108)
+|+.+ +..+.|..+|++......+... .......++.+ .+..+++-..
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~-----------------------------~~~~P~giav~--~~~ly~td~~ 307 (386)
T 3v65_B 259 RMYWVDAKHHVIERANLDGSHRKAVISQ-----------------------------GLPHPFAITVF--EDSLYWTDWH 307 (386)
T ss_dssp EEEEEETTTTEEEEECTTSCSCEEEECS-----------------------------SCSSEEEEEEE--TTEEEEEETT
T ss_pred EEEEEECCCCEEEEEeCCCCeeEEEEEC-----------------------------CCCCceEEEEE--CCEEEEeeCC
Confidence 45554 4456888888876432222211 02234556632 3455555566
Q ss_pred cCcEEEEecCCC
Q 001279 271 DGDILLWNTSTT 282 (1108)
Q Consensus 271 DG~I~lWd~~~~ 282 (1108)
.+.|..++..++
T Consensus 308 ~~~V~~~~~~~G 319 (386)
T 3v65_B 308 TKSINSANKFTG 319 (386)
T ss_dssp TTEEEEEETTTC
T ss_pred CCeEEEEECCCC
Confidence 777877775444
No 282
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.82 E-value=0.063 Score=58.90 Aligned_cols=182 Identities=14% Similarity=0.196 Sum_probs=116.5
Q ss_pred CCCccccccceeeeeeCCCCCceEEEEcCCC----CE--EEEEEC----CCcEEEEecC--CcceEEeCC------CC-C
Q 001279 17 GSLTAADLNLRIAVHYGIPATASILAFDHIQ----RL--LAIATL----DGRIKVIGGD--GIEGLLISP------SQ-L 77 (1108)
Q Consensus 17 ~~l~~~~~~~~~~~~~G~~~~is~la~sp~~----~~--LA~Gs~----dG~I~iw~~~--~~~~~~~~~------h~-~ 77 (1108)
++|...+++-+...+... +.+..+.+-|.- +. ||+++. +++|.+|.++ ..++..... .. .
T Consensus 50 ~gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~ 128 (355)
T 3amr_A 50 SGLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAIN 128 (355)
T ss_dssp TEEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCS
T ss_pred CCEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCC
Confidence 567777777777766643 567777766632 11 344433 5789999763 333332211 11 3
Q ss_pred CEEEEEE--eeCCC--EEEEEeCCCcEEEEEc-------CCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEE
Q 001279 78 PYKNLEF--LQNQG--FLISITNDNEIQVWSL-------ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1108)
Q Consensus 78 ~V~~l~f--s~d~~--~L~S~s~d~~I~vWd~-------~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~ 146 (1108)
.+..+|+ ++..+ +++....++.+..|++ .+.+++..+...+.+..+.+++...+|+++-++.. ||.|
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G--Iw~~ 206 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA--IWKF 206 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE--EEEE
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccce--EEEE
Confidence 4566777 66433 6888888999999998 33466777888889999999999999999999854 7888
Q ss_pred ecC-----CCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC-EEEEEE-CCCeEEEEEcc-CCeEEE
Q 001279 147 DAD-----EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLIAY-ENALVILWDVS-EAQIIF 214 (1108)
Q Consensus 147 d~~-----~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~-~ll~~~-~dg~V~lWdl~-~~~~~~ 214 (1108)
+.+ .++++.. +....+ ...+.+|+.-+..++. +|++++ .+..+.|||.. +.+.+-
T Consensus 207 da~p~~~~~~~~v~~---~~~g~l----------~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 207 SAEPDGGSNGTVIDR---ADGRHL----------TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp ECSTTSCSCCEEEEE---BSSSSB----------CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred eCCcCCCCCceEEEE---ecCCcc----------ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 854 2333321 221110 0347777774433555 466666 57799999997 445443
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=0.029 Score=64.75 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=96.2
Q ss_pred CceEEEEcC-CCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC-C---cEEEEEcCCCeee
Q 001279 37 TASILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND-N---EIQVWSLESRSLA 111 (1108)
Q Consensus 37 ~is~la~sp-~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-~---~I~vWd~~s~~~~ 111 (1108)
.+..|+++| ++..|.+....++|+.++.++..+..+.........|+|++++.+|+.+... + ...+|-...+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 457799998 4666777766689999999876665555555568899999999877776642 2 2333333333222
Q ss_pred --eeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 112 --CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 112 --~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
..+........++++|+..+|++++ .++ +|+.++...+..... +.+.. ......++|+|
T Consensus 218 ~~~~l~~~~~p~giavdp~~g~lyv~d~~~~--~V~~~~~~~~~~~~~-~~~~~-------------~~~P~gia~~p-- 279 (430)
T 3tc9_A 218 VITELTKGQNCNGAETHPINGELYFNSWNAG--QVFRYDFTTQETTPL-FTIQD-------------SGWEFHIQFHP-- 279 (430)
T ss_dssp SEEEEEECSSCCCEEECTTTCCEEEEETTTT--EEEEEETTTTEEEEE-EECSS-------------SSCCEEEEECT--
T ss_pred eeeeeccCCCceEEEEeCCCCEEEEEECCCC--EEEEEECCCCcEEEE-EEcCC-------------CCcceeEEEcC--
Confidence 2222233456788999555566555 456 455565544444221 11211 14578999988
Q ss_pred CCCEEEEEE-CCCeEEEEEccC
Q 001279 189 SGNRVLIAY-ENALVILWDVSE 209 (1108)
Q Consensus 189 ~~~~ll~~~-~dg~V~lWdl~~ 209 (1108)
++++|+++. .++.|..++...
T Consensus 280 dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TSSEEEEEETTTTEEEEEEEET
T ss_pred CCCEEEEEECCCCEEEEEeCCc
Confidence 677555554 567888887664
No 284
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.75 E-value=0.064 Score=65.69 Aligned_cols=119 Identities=10% Similarity=0.058 Sum_probs=75.0
Q ss_pred CCCCceEEEEcC-CCCEEEEEECCC-----------cEEEEecCCcceE----EeCCCCCCEEEEEEeeCCCEEEEEeC-
Q 001279 34 IPATASILAFDH-IQRLLAIATLDG-----------RIKVIGGDGIEGL----LISPSQLPYKNLEFLQNQGFLISITN- 96 (1108)
Q Consensus 34 ~~~~is~la~sp-~~~~LA~Gs~dG-----------~I~iw~~~~~~~~----~~~~h~~~V~~l~fs~d~~~L~S~s~- 96 (1108)
.|......++.| ++++++.|+.+. .+.+||....+.. ...++......+++..++..++.++.
T Consensus 184 ~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 184 LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 344445677888 899999998653 5888998654332 22234444556788888888888874
Q ss_pred CCcEEEEEcCCCeeeee--ecCCCCeeEEEEecCCCEEEEEe-CC-----CcEEEEEEecCCCeee
Q 001279 97 DNEIQVWSLESRSLACC--LKWESNITAFSVISGSHFMYIGD-EN-----GLMSVIKYDADEGKLF 154 (1108)
Q Consensus 97 d~~I~vWd~~s~~~~~~--~~~~~~Itsl~~~~~~~~l~vg~-~d-----g~V~vw~~d~~~~~l~ 154 (1108)
++.+.+||..+.+-... +.....-.++++.++++++++|+ .+ ..+.+|+ ....+..
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd--~~t~~W~ 327 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS--PSSKTWT 327 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE--TTTTEEE
T ss_pred CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeC--CCCCcce
Confidence 56899999988754332 22222224556667888888887 34 3454544 4344443
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.71 E-value=0.42 Score=54.26 Aligned_cols=159 Identities=13% Similarity=-0.013 Sum_probs=100.9
Q ss_pred CCCceEEEEcCCCCEEEEEE-CCCcEEEEecCCc-----ceEEeCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCC
Q 001279 35 PATASILAFDHIQRLLAIAT-LDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLES 107 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~~-----~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s 107 (1108)
...+..|+|++....|.... ..++|+.++.++. ........-.....|++.+.++.|+.+. ..+.|.+.|++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 35678899999777666655 4588999988752 2223333444678999998555665554 467899999987
Q ss_pred Ceeeeeec-CCCCeeEEEEecCCCEEEEEeCC--CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 108 RSLACCLK-WESNITAFSVISGSHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 108 ~~~~~~~~-~~~~Itsl~~~~~~~~l~vg~~d--g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
........ .-.....++++|.+.+|+..+.. +.|...+++. ...... +... .....+|++
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG--~~~~~~---~~~~------------l~~P~glav 253 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSL---VTEN------------IQWPNGITL 253 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS--CSCEEE---ECSS------------CSCEEEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC--CccEEE---EECC------------CCceEEEEE
Confidence 65444443 33457899999988888888743 5554444442 221111 1111 156899999
Q ss_pred ccCCCCCEEEEEE-CCCeEEEEEccCCeE
Q 001279 185 HPNSSGNRVLIAY-ENALVILWDVSEAQI 212 (1108)
Q Consensus 185 ~P~~~~~~ll~~~-~dg~V~lWdl~~~~~ 212 (1108)
.|. +.+|+.+- ..+.|..+|++....
T Consensus 254 d~~--~~~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 254 DLL--SGRLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp ETT--TTEEEEEETTTTEEEEEETTSCCC
T ss_pred EeC--CCEEEEEECCCCEEEEEeCCCCcc
Confidence 874 44566654 456888999876543
No 286
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.68 E-value=0.23 Score=54.06 Aligned_cols=194 Identities=12% Similarity=0.033 Sum_probs=105.4
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCC--cEEEEecCCcceE--EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDG--RIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG--~I~iw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s 107 (1108)
...+..+..++++++++++++..... .|..++....++. ...+....-..+++.+++..+++-..++.|.++|..+
T Consensus 68 ~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 68 ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred EeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 34556788999999999766554432 4666665443332 2222222334555555543344444578899999876
Q ss_pred Ce--eeee-------e--cCCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001279 108 RS--LACC-------L--KWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1108)
Q Consensus 108 ~~--~~~~-------~--~~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1108)
+. +... . ..-.....+ ++++++|+++.. .+.|++++++.. +.+... ..+.. .
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~~~~~-~~~~~-~----------- 211 (306)
T 2p4o_A 148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DKPGEP-EIFVE-Q----------- 211 (306)
T ss_dssp TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SCBCCC-EEEEE-S-----------
T ss_pred CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CCCCcc-EEEec-c-----------
Confidence 52 2110 0 011234455 788888888775 566666665531 332110 00100 0
Q ss_pred CCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEE
Q 001279 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1108)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1108)
.....+++.| +|..+++....+.|.++|.. ++...+... . . .-...+++
T Consensus 212 -~~P~gi~vd~--dG~l~va~~~~~~V~~~~~~-G~~~~~~~~---~----~--------------------~~~~p~~~ 260 (306)
T 2p4o_A 212 -TNIDDFAFDV--EGNLYGATHIYNSVVRIAPD-RSTTIIAQA---E----Q--------------------GVIGSTAV 260 (306)
T ss_dssp -CCCSSEEEBT--TCCEEEECBTTCCEEEECTT-CCEEEEECG---G----G--------------------TCTTEEEE
T ss_pred -CCCCCeEECC--CCCEEEEeCCCCeEEEECCC-CCEEEEeec---c----c--------------------ccCCceEE
Confidence 2245567765 67754455557788899875 444322211 0 0 02457888
Q ss_pred Eeec--CCCCEEEEEEccC
Q 001279 256 CWAS--SSGSILAVGYIDG 272 (1108)
Q Consensus 256 ~w~s--pdg~~l~sg~~DG 272 (1108)
+|.. +++..|++....+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 8643 7888887776544
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.65 E-value=0.24 Score=54.35 Aligned_cols=196 Identities=16% Similarity=0.069 Sum_probs=115.7
Q ss_pred CceEEEEcCCCCEEEEE-ECCCcEEEEecCCcc--eEEeCCCCCCEEEEEEeeCCCEEEEE-eCCCcEEEEEcCCCeeee
Q 001279 37 TASILAFDHIQRLLAIA-TLDGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQNQGFLISI-TNDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~G-s~dG~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~d~~~L~S~-s~d~~I~vWd~~s~~~~~ 112 (1108)
.+.+++|++....|... ...++|+.++.++.. .......-.....|++.+.++.|+.+ ...+.|.+.+........
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 46689999865555444 456889999987652 12222222346688998755656555 456789999987654333
Q ss_pred ee-cCCCCeeEEEEecCCCEEEEEeC--CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 113 CL-KWESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 113 ~~-~~~~~Itsl~~~~~~~~l~vg~~--dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
.. ..-.....++++|.+.+|+..+. .+. |+.++.+....... +... .....+|+++|.
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~--I~r~~~dG~~~~~~---~~~~------------l~~Pnglavd~~-- 176 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPK--IERAGMDGSSRFII---INSE------------IYWPNGLTLDYE-- 176 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCE--EEEEETTSCSCEEE---ECSS------------CSCEEEEEEETT--
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCE--EEEEEcCCCCeEEE---EECC------------CCCccEEEEecc--
Confidence 33 33356789999998888888874 454 45554332111110 1111 145789999873
Q ss_pred CCEEEEEE-CCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE
Q 001279 190 GNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1108)
Q Consensus 190 ~~~ll~~~-~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1108)
+.+|+.+- ..+.|..+|++......+... ......+++.+ .+..+++-
T Consensus 177 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-----------------------------~~~~P~glav~--~~~lywtd 225 (318)
T 3sov_A 177 EQKLYWADAKLNFIHKSNLDGTNRQAVVKG-----------------------------SLPHPFALTLF--EDILYWTD 225 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECS-----------------------------CCSCEEEEEEE--TTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEcCCCCceEEEecC-----------------------------CCCCceEEEEe--CCEEEEEe
Confidence 44465554 467888888876432222110 02234456643 23445555
Q ss_pred EccCcEEEEecCCC
Q 001279 269 YIDGDILLWNTSTT 282 (1108)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1108)
...+.|..++..++
T Consensus 226 ~~~~~V~~~~~~~G 239 (318)
T 3sov_A 226 WSTHSILACNKYTG 239 (318)
T ss_dssp TTTTEEEEEETTTC
T ss_pred cCCCeEEEEECCCC
Confidence 56677888887655
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.56 E-value=0.54 Score=53.99 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=112.4
Q ss_pred CceEEEEcCC--CCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-------------------
Q 001279 37 TASILAFDHI--QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT------------------- 95 (1108)
Q Consensus 37 ~is~la~sp~--~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s------------------- 95 (1108)
.+..++++|+ ...|.++...++|+.++.....+............|+|++++..+++-.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 4668999995 5555565555899999986555554444344566677776665222221
Q ss_pred ----------------------------CCCcEEEEEcCCCeeeeee-c--CCCCeeEEEEecCCCEEEEEeC-CCcEEE
Q 001279 96 ----------------------------NDNEIQVWSLESRSLACCL-K--WESNITAFSVISGSHFMYIGDE-NGLMSV 143 (1108)
Q Consensus 96 ----------------------------~d~~I~vWd~~s~~~~~~~-~--~~~~Itsl~~~~~~~~l~vg~~-dg~V~v 143 (1108)
.++.|..+|..++.....+ . ....-..++++|++++|++.+. .+.|+.
T Consensus 220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~ 299 (433)
T 4hw6_A 220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR 299 (433)
T ss_dssp CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence 1222333333333321111 1 1111235899999998887775 465666
Q ss_pred EEEecCCCeeeeeceeecccccccccCCC-----CCCCCCeEEEeccc-------CCCCCEEEEEECCCeEEEEEccCCe
Q 001279 144 IKYDADEGKLFQLPYNISADALSEKAGFP-----LLSHQPVVGVLPHP-------NSSGNRVLIAYENALVILWDVSEAQ 211 (1108)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~-----~~~~~~V~~v~f~P-------~~~~~~ll~~~~dg~V~lWdl~~~~ 211 (1108)
++++...+.+.. ++.+.+.. ...+.. .........+++.+ ..++.++++-+.++.|+.++. .+.
T Consensus 300 ~~~d~~~~~~~~-~~~~ag~~--g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 300 VDYNRETGKLAV-PYIVCGQH--SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEBCTTTCCBCC-CEEEEECT--TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EeCCCCCcccCc-EEEEEecC--CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 556543343321 12222110 000000 01124577788821 125664444445678888885 556
Q ss_pred EEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecC
Q 001279 212 IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1108)
+..+.+... ....+..+-.......-.....+++..++|..+++=..++.|+.++++
T Consensus 376 v~t~~G~g~------------~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGN------------SREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCT------------TCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCC------------CCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 655554310 000000000000011133467788642566655555566778877653
No 289
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.50 E-value=0.49 Score=52.60 Aligned_cols=197 Identities=13% Similarity=0.043 Sum_probs=120.4
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeeee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACC 113 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~~ 113 (1108)
+...+|.+..+ ..+|..+. ...|+..+.++...............|+|.+..+.|+-+. ..+.|..++.........
T Consensus 33 ~d~~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TTSSCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCCccccccc-CceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 45567888777 44554544 4568888988766655544445689999998767776665 467899999987754443
Q ss_pred ecC-CCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 114 LKW-ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 114 ~~~-~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
... ......+++++.+..|+..+. .+.|.+.+++....+.. +... ......+++.|. .+.
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-----~~~~------------l~~P~~iavdp~-~g~ 172 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-----LWQS------------LEKPRAIALHPM-EGT 172 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----ECTT------------CSCEEEEEEETT-TTE
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE-----EeCC------------CCCcceEEEecC-cCe
Confidence 322 245678999987777776654 56666655543211111 1111 145788999884 344
Q ss_pred EEEEEECC-CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-
Q 001279 192 RVLIAYEN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY- 269 (1108)
Q Consensus 192 ~ll~~~~d-g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~- 269 (1108)
.+.+-..+ +.|..++++......+... .-.....+++. +++..|+.+.
T Consensus 173 ly~td~~~~~~I~r~~~dG~~~~~~~~~-----------------------------~~~~PnGla~d-~~~~~lY~aD~ 222 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMDGSGRRIIADT-----------------------------HLFWPNGLTID-YAGRRMYWVDA 222 (349)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEESCCS-----------------------------SCSCEEEEEEE-TTTTEEEEEET
T ss_pred EEEeccCCCCEEEEEeCCCCCcEEEEEC-----------------------------CCCCcceEEEe-CCCCEEEEEEC
Confidence 33444444 6777777765432221100 02345678875 7676666654
Q ss_pred ccCcEEEEecCC
Q 001279 270 IDGDILLWNTST 281 (1108)
Q Consensus 270 ~DG~I~lWd~~~ 281 (1108)
..+.|..+++..
T Consensus 223 ~~~~I~~~~~dG 234 (349)
T 3v64_C 223 KHHVIERANLDG 234 (349)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCEEEEEeCCC
Confidence 456788888753
No 290
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.45 E-value=0.4 Score=50.46 Aligned_cols=172 Identities=10% Similarity=0.110 Sum_probs=106.5
Q ss_pred CCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeeeeecCC--CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001279 76 QLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1108)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~~~~~~--~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~ 152 (1108)
...++.|+|.|++..|++++ .++.|...|.. ++++..+... .....+++.+++.++++.-.++.+.++.++....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~- 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE- 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-
Confidence 35799999999887777754 57789999998 8887777443 5788889988887666655677787777765432
Q ss_pred eee-eceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC---CeEEEEeCCCccccccccc
Q 001279 153 LFQ-LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---AQIIFVGGGKDLQLKDGVV 228 (1108)
Q Consensus 153 l~~-~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~---~~~~~~~~~~~~~~~~~~~ 228 (1108)
+.. ....++- + .........+|+|.| .+.+|+++.......||.++. ...+....... +..
T Consensus 104 i~~~~~~~~~~-------~-~~~~N~g~EGLA~d~--~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~--~~~--- 168 (255)
T 3qqz_A 104 VKILKKIKIPL-------Q-ESPTNCGFEGLAYSR--QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA--LQR--- 168 (255)
T ss_dssp EEEEEEEECCC-------S-SCCCSSCCEEEEEET--TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH--HHH---
T ss_pred eeeeeeecccc-------c-cccccCCcceEEEeC--CCCEEEEEECcCCceEEEEcccccCCceeeecchh--hcc---
Confidence 111 1111110 0 011224589999988 466788888877666776652 11111110000 000
Q ss_pred CCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
......+.++++....+.+++....+..|..+|...
T Consensus 169 -----------------~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 169 -----------------QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp -----------------TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred -----------------ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 001345678888755566667777777888888753
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.36 E-value=0.57 Score=58.01 Aligned_cols=161 Identities=13% Similarity=-0.013 Sum_probs=100.2
Q ss_pred CCCceEEEEcCCCCEEEEEE-CCCcEEEEecCCc-----ceEEeCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCC
Q 001279 35 PATASILAFDHIQRLLAIAT-LDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLES 107 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~~-----~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s 107 (1108)
...+..|+|++....|.... ..++|+.+++++. ........-.....|++.+.++.|+.+. ..+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 34567899999666655554 4588999988753 2223333344567899998776676665 467899999987
Q ss_pred Ceeeeeec-CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 108 RSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 108 ~~~~~~~~-~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
......+. .-.....|+++|...+|+..+....-+|+.++.+....... +... ...+.+|++.|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l---v~~~------------l~~P~GLavD~ 567 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTEN------------IQWPNGITLDL 567 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE---ECSS------------CSCEEEEEEET
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE---EeCC------------CCCceEEEEec
Confidence 65444432 33468899999998889888753212445544432222211 2111 15688999977
Q ss_pred CCCCCEEEEEE-CCCeEEEEEccCCeE
Q 001279 187 NSSGNRVLIAY-ENALVILWDVSEAQI 212 (1108)
Q Consensus 187 ~~~~~~ll~~~-~dg~V~lWdl~~~~~ 212 (1108)
. ..+|+.+- ....|..+|+.....
T Consensus 568 ~--~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 568 L--SGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp T--TTEEEEEETTTTEEEEEETTSCSC
T ss_pred C--CCeEEEEeCCCCcEEEEecCCCce
Confidence 4 44466654 456788888876543
No 292
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.24 E-value=0.16 Score=56.91 Aligned_cols=162 Identities=19% Similarity=0.259 Sum_probs=96.5
Q ss_pred eeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC-----CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCC--------
Q 001279 85 LQNQGFLISITNDNEIQVWSLESRSLACCLKW-----ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG-------- 151 (1108)
Q Consensus 85 s~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~-----~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~-------- 151 (1108)
+.++..|+.+- ++.||.=++......+.+.. -..|..+..+|+|.+||+.+.. .|.|..+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccc
Confidence 34555555554 57788777764433333322 2368889999999999998655 577877762110
Q ss_pred -eeeeeceeecccccccccCCCCCCCCCeEEEecccCC-CCCEEEEEECCCeEEEEEccCC--eEEEEeCCCcccccccc
Q 001279 152 -KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-SGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKDGV 227 (1108)
Q Consensus 152 -~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-~~~~ll~~~~dg~V~lWdl~~~--~~~~~~~~~~~~~~~~~ 227 (1108)
.+....|++... ......+|..+.|||.. .+..|++-..|++|++||+... +.. .....
T Consensus 107 ~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~-------- 169 (452)
T 3pbp_A 107 DAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKP-------- 169 (452)
T ss_dssp HTTEEEEEEGGGC--------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCC--------
T ss_pred cccceeEEEcCCc--------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcc--------
Confidence 011111333210 01123679999999953 3556999999999999999863 222 22110
Q ss_pred cCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE--ccCcEEEEe
Q 001279 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY--IDGDILLWN 278 (1108)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~--~DG~I~lWd 278 (1108)
....|. ......|.++||. .+|-.|+... ..|.|+-.-
T Consensus 170 -------~~~fg~-----d~~~~ev~S~~Fg-~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 170 -------NNSFGL-----DARVNDITDLEFS-KDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp -------CSEEES-----CSSCCCEEEEEEC-TTSSCEEEEECTTSCEEEEES
T ss_pred -------ccccCC-----CcccceEEEEEEc-CCCcEEEEEecCCCCCEEEEC
Confidence 001110 1114689999975 6777777755 677776543
No 293
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.21 E-value=0.91 Score=51.19 Aligned_cols=193 Identities=13% Similarity=0.030 Sum_probs=115.4
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeeeeec
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLK 115 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~~~~ 115 (1108)
.-+|.+.++ ..+|..+. ...|+.++.++...............++|.+.++.|+-+. ..+.|..|+...+.......
T Consensus 78 ~~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SSCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CCeECCccc-cceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 455666666 34444443 4678899988766555444455688999998767776665 46789999998775444332
Q ss_pred -CCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEE
Q 001279 116 -WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1108)
Q Consensus 116 -~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1108)
.......+++++.+..|+..+. .+.|.+.+++. ...... +... ......|++.|. .+. |
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l---~~~~------------l~~P~giavdp~-~g~-l 216 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVL---LWQS------------LEKPRAIALHPM-EGT-I 216 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEE---ECSS------------CSCEEEEEEETT-TTE-E
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEe---ecCC------------CCCCcEEEEEcC-CCe-E
Confidence 2234577899987777777665 45454444332 211110 1111 145788999874 344 4
Q ss_pred EEE-ECC-CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-c
Q 001279 194 LIA-YEN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-I 270 (1108)
Q Consensus 194 l~~-~~d-g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~ 270 (1108)
+.+ ... +.|..++++......+... .-.....++|. |++..|+.+. .
T Consensus 217 y~td~~~~~~I~r~~~dG~~~~~~~~~-----------------------------~~~~PnGlavd-~~~~~lY~aD~~ 266 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGSGRRIIADT-----------------------------HLFWPNGLTID-YAGRRMYWVDAK 266 (386)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEECS-----------------------------SCSCEEEEEEE-GGGTEEEEEETT
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEEC-----------------------------CCCCeeeEEEe-CCCCEEEEEECC
Confidence 444 344 6777777765433222110 02235678875 6666666554 4
Q ss_pred cCcEEEEecC
Q 001279 271 DGDILLWNTS 280 (1108)
Q Consensus 271 DG~I~lWd~~ 280 (1108)
.+.|..+++.
T Consensus 267 ~~~I~~~d~d 276 (386)
T 3v65_B 267 HHVIERANLD 276 (386)
T ss_dssp TTEEEEECTT
T ss_pred CCEEEEEeCC
Confidence 5678888775
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.14 E-value=0.14 Score=58.94 Aligned_cols=158 Identities=12% Similarity=0.084 Sum_probs=99.8
Q ss_pred CEEEEEEee-CCCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCC---cEEEEEEecCCCee
Q 001279 78 PYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---LMSVIKYDADEGKL 153 (1108)
Q Consensus 78 ~V~~l~fs~-d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg---~V~vw~~d~~~~~l 153 (1108)
.-..|+|+| +++.|+.+...+.|..+|..++.+............+++++++++|++.+..+ ...++.++.. +.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 357889998 46778777766889999999887666555556789999999999888887532 2233334332 222
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCC
Q 001279 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1108)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1108)
... ..+.. ...+.+++++|. ++..+++-..++.|..||..++....+... .
T Consensus 217 ~~~-~~l~~-------------~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-------------~- 267 (430)
T 3tc9_A 217 KVI-TELTK-------------GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTI-------------Q- 267 (430)
T ss_dssp CSE-EEEEE-------------CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEEC-------------S-
T ss_pred eee-eeecc-------------CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEc-------------C-
Confidence 100 00110 033567788774 566455555778999999987765332211 0
Q ss_pred CCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEE-EccCcEEEEecC
Q 001279 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTS 280 (1108)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg-~~DG~I~lWd~~ 280 (1108)
.......++|. |+|++|+.. ...+.|..++..
T Consensus 268 --------------~~~~P~gia~~-pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 268 --------------DSGWEFHIQFH-PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp --------------SSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred --------------CCCcceeEEEc-CCCCEEEEEECCCCEEEEEeCC
Confidence 01234568865 999955554 456788887764
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.11 E-value=0.21 Score=54.35 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=105.4
Q ss_pred ceEEEEcCCCCEEEEEE-CCCcEEEEecCCcce-EEeCCC-----CC--CEEEEEE---eeCCCEEEEEeC---------
Q 001279 38 ASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEG-LLISPS-----QL--PYKNLEF---LQNQGFLISITN--------- 96 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs-~dG~I~iw~~~~~~~-~~~~~h-----~~--~V~~l~f---s~d~~~L~S~s~--------- 96 (1108)
..+++|++....+-+++ ..|+|..|+..+... ....++ +. .+..|.| .++++.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45789998777777777 689999999874322 222332 11 3688999 577555554331
Q ss_pred ----CCcEEEEEcC---CCeeeeeecCC--------------CCeeEEEEecCCCEEEEEeCC-CcEEEEEEecCCCeee
Q 001279 97 ----DNEIQVWSLE---SRSLACCLKWE--------------SNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLF 154 (1108)
Q Consensus 97 ----d~~I~vWd~~---s~~~~~~~~~~--------------~~Itsl~~~~~~~~l~vg~~d-g~V~vw~~d~~~~~l~ 154 (1108)
++.|..+|+. +++.+...... .....++++++++.-++++.. +. ||.++.+...+.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~~~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGKTVS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSCCEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCCEEe
Confidence 5779999999 77766544321 247889999999988888877 74 688887644333
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccC
Q 001279 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
++..... ........++|+++| ++.+|++....|.+..+|+..
T Consensus 173 --~~~~~~~--------~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 173 --TFAWESG--------NGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp --EEEECCC--------CSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred --eeeecCC--------CcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence 2222110 001113477999998 788788887889999999874
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.06 E-value=0.47 Score=52.17 Aligned_cols=197 Identities=9% Similarity=0.039 Sum_probs=106.5
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcE-EEEecC-CcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEc--CCCe
Q 001279 34 IPATASILAFDHIQRLLAIATLDGRI-KVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL--ESRS 109 (1108)
Q Consensus 34 ~~~~is~la~sp~~~~LA~Gs~dG~I-~iw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~--~s~~ 109 (1108)
+|..+..+++.+++.++|++. +|.| +-.|.- .-+. ...++...+..+.|.+++.+++.+...+..+-+|- .+-+
T Consensus 120 ~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~-~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQA-LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE 197 (327)
T ss_dssp CSSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSEEE-EECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE
T ss_pred CCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEE-eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee
Confidence 455677788877787777764 5555 333432 2222 23455668999999998776665544444444553 2223
Q ss_pred eeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCC
Q 001279 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1108)
Q Consensus 110 ~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1108)
.+. ......+..+.+.+++.+++ +..+|.+++...| .+.--. ....+. ......+.++.+.| +
T Consensus 198 ~~~-~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D--~G~tW~-~~~~~~----------~~~~~~~~~v~~~~--~ 260 (327)
T 2xbg_A 198 PHN-RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPD--NSENWG-ELLSPL----------RRNSVGFLDLAYRT--P 260 (327)
T ss_dssp EEE-CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETT--EEEEEC-CCBCTT----------SSCCSCEEEEEESS--S
T ss_pred ECC-CCCCCccceeEECCCCCEEE-EeCCceEEEecCC--CCCeeE-eccCCc----------ccCCcceEEEEecC--C
Confidence 332 23446788899988877554 4457765543211 111110 011110 00113588899976 5
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001279 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1108)
Q Consensus 190 ~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1108)
+. ++++..+|.| .+..+.++.-..... . ......+.++.|. ++ ..+++++
T Consensus 261 ~~-~~~~g~~g~i-~~S~DgG~tW~~~~~-------------~-------------~~~~~~~~~v~~~-~~-~~~~~~G 310 (327)
T 2xbg_A 261 NE-VWLAGGAGAL-LCSQDGGQTWQQDVD-------------V-------------KKVPSNFYKILFF-SP-DQGFILG 310 (327)
T ss_dssp SC-EEEEESTTCE-EEESSTTSSCEECGG-------------G-------------TTSSSCCCEEEEE-ET-TEEEEEC
T ss_pred CE-EEEEeCCCeE-EEeCCCCcccEEcCc-------------c-------------CCCCCCeEEEEEE-CC-CceEEEc
Confidence 66 6666667765 444554432111100 0 0003457778865 44 4577777
Q ss_pred ccCcEEEEec
Q 001279 270 IDGDILLWNT 279 (1108)
Q Consensus 270 ~DG~I~lWd~ 279 (1108)
.+|.|.-++-
T Consensus 311 ~~G~i~~~~~ 320 (327)
T 2xbg_A 311 QKGILLRYVT 320 (327)
T ss_dssp STTEEEEECC
T ss_pred CCceEEEEcC
Confidence 8998877664
No 297
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.03 E-value=0.17 Score=60.77 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=52.6
Q ss_pred eEEEEcCCCCEEEEEEC--------------------C----CcEEEEecCCcceEEe--C-CCC--------CCEEEEE
Q 001279 39 SILAFDHIQRLLAIATL--------------------D----GRIKVIGGDGIEGLLI--S-PSQ--------LPYKNLE 83 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~--------------------d----G~I~iw~~~~~~~~~~--~-~h~--------~~V~~l~ 83 (1108)
..++|+|+..++.+++. | +.|..+|..+.+.+-. . +|. .++. +.
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~ 327 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD 327 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence 35789999999998884 2 5788999876666532 2 232 1221 22
Q ss_pred Ee-eCC---CEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001279 84 FL-QNQ---GFLISITNDNEIQVWSLESRSLACCLK 115 (1108)
Q Consensus 84 fs-~d~---~~L~S~s~d~~I~vWd~~s~~~~~~~~ 115 (1108)
.. .+| ..|+.++.++.+.++|.++++++....
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 22 355 367888899999999999999886553
No 298
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.78 E-value=0.64 Score=55.67 Aligned_cols=72 Identities=10% Similarity=0.082 Sum_probs=46.1
Q ss_pred EEEEeeCCCEEEEEeCC----------------CcEEEEEcCCCeeeeeecCCC----------CeeEEEEe-cCC---C
Q 001279 81 NLEFLQNQGFLISITND----------------NEIQVWSLESRSLACCLKWES----------NITAFSVI-SGS---H 130 (1108)
Q Consensus 81 ~l~fs~d~~~L~S~s~d----------------~~I~vWd~~s~~~~~~~~~~~----------~Itsl~~~-~~~---~ 130 (1108)
.+++.+....++.++.+ +.|..+|..+++.+..++... ...-+... .++ +
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 35566666777776654 379999999999987774321 11112222 456 5
Q ss_pred EEEEEeCCCcEEEEEEecCCCeee
Q 001279 131 FMYIGDENGLMSVIKYDADEGKLF 154 (1108)
Q Consensus 131 ~l~vg~~dg~V~vw~~d~~~~~l~ 154 (1108)
.++.++.+|.+++++ ..+++++
T Consensus 325 ~v~~~~~~G~l~~lD--~~tG~~l 346 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLD--RTDGALV 346 (599)
T ss_dssp EEEEECTTSEEEEEE--TTTCCEE
T ss_pred EEEEECCCcEEEEEE--CCCCCEe
Confidence 677889999765555 4556665
No 299
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.76 E-value=0.0016 Score=66.12 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001279 1055 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1107 (1108)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 1107 (1108)
-..+..+=+++.||||||+.|.+||++|...|+.|..-|++| +.+-||+
T Consensus 147 ~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l----~~~~~~~ 195 (196)
T 2nut_C 147 QRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYL----NMRSTYA 195 (196)
T ss_dssp --CCEEEHHHHC-----------------------------------------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc
Confidence 455667788999999999999999999999999999999665 4567996
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.60 E-value=1.1 Score=51.73 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=93.2
Q ss_pred CceEEEEcCC-CCEEEEE-ECCCcEEEEecCCcceEEeCCCC----CCEEEEEE-------eeCCCEEEEEeCCC-----
Q 001279 37 TASILAFDHI-QRLLAIA-TLDGRIKVIGGDGIEGLLISPSQ----LPYKNLEF-------LQNQGFLISITNDN----- 98 (1108)
Q Consensus 37 ~is~la~sp~-~~~LA~G-s~dG~I~iw~~~~~~~~~~~~h~----~~V~~l~f-------s~d~~~L~S~s~d~----- 98 (1108)
....|+|+|. ...|.++ ...+.|+++|.....+..+..-. .....|+| ++++.+|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999993 5544444 44578999999876665443321 24799999 99998777776654
Q ss_pred --cEEEEEcCC-Ceee-----eeecCCCCeeEEEEecCCCEEEEEe-CCCcEEEEEEec-----CCCee-----------
Q 001279 99 --EIQVWSLES-RSLA-----CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDA-----DEGKL----------- 153 (1108)
Q Consensus 99 --~I~vWd~~s-~~~~-----~~~~~~~~Itsl~~~~~~~~l~vg~-~dg~V~vw~~d~-----~~~~l----------- 153 (1108)
.|.+.+... +... ..+.--.....++++|+..+|++.. .++.|+.++++. ..+.+
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266665443 2221 1121112345778899766666655 566566665541 02332
Q ss_pred -eeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEccC
Q 001279 154 -FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSE 209 (1108)
Q Consensus 154 -~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~~ 209 (1108)
.+. +.++ .......|+|+| +++.|+++. ....|+.+|...
T Consensus 300 ~~~l-~~~~-------------~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 300 FKQL-FTIA-------------DPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEE-EECS-------------SSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred ccee-EecC-------------CCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCC
Confidence 010 1121 114578999988 677556554 566888866543
No 301
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.59 E-value=1.4 Score=47.95 Aligned_cols=183 Identities=12% Similarity=-0.046 Sum_probs=108.2
Q ss_pred EEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCC----Ceeeeeec-CCCCeeE
Q 001279 49 LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLES----RSLACCLK-WESNITA 122 (1108)
Q Consensus 49 ~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s----~~~~~~~~-~~~~Its 122 (1108)
+|..+.. ..|+..++++.+.......-.....+.|.+.++.|+-+.. .+.|..+|+.+ ........ .-.....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4444443 5688899877655544444556789999987777766654 67899999886 22222222 2245678
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC-C-
Q 001279 123 FSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-N- 199 (1108)
Q Consensus 123 l~~~~~~~~l~vg~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-d- 199 (1108)
+++++.+..|++.+ ..+.|.+.+++. ...... +... .....+++..|. .+ .|+.+.. .
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~---~~~~------------~~~P~~iavdp~-~g-~ly~~d~~~~ 142 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTL---FREN------------GSKPRAIVVDPV-HG-FMYWTDWGTP 142 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS--SSEEEE---EECT------------TCCEEEEEEETT-TT-EEEEEECSSS
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCC--CceEEE---EECC------------CCCcceEEeCCC-CC-EEEEEccCCC
Confidence 99998777777665 467676665542 222111 1111 145788999874 34 4555543 3
Q ss_pred CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcEEEEe
Q 001279 200 ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWN 278 (1108)
Q Consensus 200 g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I~lWd 278 (1108)
+.|..++++......+... .-.....++|. +++..|+.+. ..+.|..++
T Consensus 143 ~~I~~~~~dG~~~~~~~~~-----------------------------~~~~P~gla~d-~~~~~lY~~D~~~~~I~~~d 192 (316)
T 1ijq_A 143 AKIKKGGLNGVDIYSLVTE-----------------------------NIQWPNGITLD-LLSGRLYWVDSKLHSISSID 192 (316)
T ss_dssp CEEEEEETTSCCEEEEECS-----------------------------SCSCEEEEEEE-TTTTEEEEEETTTTEEEEEE
T ss_pred CeEEEEcCCCCCeEEEEEC-----------------------------CCCCceEEEEe-ccCCEEEEEECCCCeEEEEe
Confidence 6777777765433222110 02345678875 7777776655 456888888
Q ss_pred cCC
Q 001279 279 TST 281 (1108)
Q Consensus 279 ~~~ 281 (1108)
+..
T Consensus 193 ~dg 195 (316)
T 1ijq_A 193 VNG 195 (316)
T ss_dssp TTS
T ss_pred cCC
Confidence 753
No 302
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.46 E-value=0.69 Score=57.36 Aligned_cols=111 Identities=10% Similarity=-0.016 Sum_probs=70.5
Q ss_pred eEEEEcCCCCEEEEEECC-----CcEEEEecCCcc----eEEeCCCCCCEEEEEEeeCCCEEEEEeC---CCcEEEEEcC
Q 001279 39 SILAFDHIQRLLAIATLD-----GRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLE 106 (1108)
Q Consensus 39 s~la~sp~~~~LA~Gs~d-----G~I~iw~~~~~~----~~~~~~h~~~V~~l~fs~d~~~L~S~s~---d~~I~vWd~~ 106 (1108)
..++|+||++.|+....| ..|+++++.+.. .+....+......+.|+|||.+|+..+. ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 468899999988888765 358888886532 2333344455778999999998887663 4568999998
Q ss_pred CC--ee--eeeec-CCCCeeEEEEecCCCEEEEEeCC--CcEEEEEEecC
Q 001279 107 SR--SL--ACCLK-WESNITAFSVISGSHFMYIGDEN--GLMSVIKYDAD 149 (1108)
Q Consensus 107 s~--~~--~~~~~-~~~~Itsl~~~~~~~~l~vg~~d--g~V~vw~~d~~ 149 (1108)
++ .. ..... ......+..|+.++.++++...+ +..+||.++..
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 75 22 22222 23444555544444455555554 55667776654
No 303
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=95.42 E-value=0.00036 Score=70.18 Aligned_cols=48 Identities=23% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001279 1056 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1107 (1108)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 1107 (1108)
..+..+=+++.||||||+.|.+||++|++.|+.|-.-|++|-++| |||
T Consensus 139 ~im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~m----wwk 186 (189)
T 4b93_A 139 GIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAM----CMK 186 (189)
T ss_dssp TCCEECCCCBCTTSSBCCCCEETTCC--------------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 344445578889999999999999999999999999999887665 996
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.93 E-value=0.063 Score=66.04 Aligned_cols=158 Identities=13% Similarity=-0.045 Sum_probs=93.4
Q ss_pred CCceEEEEcCCCCEEEEEE-CCCcEEEEecCC----cceE-EeCCCCCCEEEEEEeeCCCEEEEE-eCCCcEEEEEcCCC
Q 001279 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDG----IEGL-LISPSQLPYKNLEFLQNQGFLISI-TNDNEIQVWSLESR 108 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~----~~~~-~~~~h~~~V~~l~fs~d~~~L~S~-s~d~~I~vWd~~s~ 108 (1108)
..+..|+|++....|.... ..++|+.+++++ .... .....-.....|++.+.++.|+.+ ...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899999777766654 458999999875 2222 221111234568887654555444 45678999998876
Q ss_pred eeeeeecC-CCCeeEEEEecCCCEEEEEeCC--CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 109 SLACCLKW-ESNITAFSVISGSHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 109 ~~~~~~~~-~~~Itsl~~~~~~~~l~vg~~d--g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
........ ......++++|.+.+|++.... +.|++++++....+.. +.. . .....+|++.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l-----~~~-~-----------l~~PnGlavd 548 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-----VTE-N-----------IQWPNGITLD 548 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE-----SCS-S-----------CSSCCCEEEC
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE-----EeC-C-----------CCCccEEEEe
Confidence 54433322 2456788999988877777643 5565544442211111 111 1 1456788998
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCe
Q 001279 186 PNSSGNRVLIAYENALVILWDVSEAQ 211 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg~V~lWdl~~~~ 211 (1108)
|. .+.++++-+..+.|.++|+....
T Consensus 549 ~~-~~~LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 549 LL-SGRLYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp TT-TCCEEEEETTTTEEEEECSSSSC
T ss_pred cc-CCEEEEEecCCCeEEEEccCCCc
Confidence 74 34433444456788888887643
No 305
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.78 E-value=0.53 Score=54.53 Aligned_cols=116 Identities=22% Similarity=0.268 Sum_probs=74.8
Q ss_pred EEEEEEee-CCCEEEEEeC-CCcEEEEEcCCCeeeeeecCC----CCeeEEEE-------ecCCCEEEEEeCCC-----c
Q 001279 79 YKNLEFLQ-NQGFLISITN-DNEIQVWSLESRSLACCLKWE----SNITAFSV-------ISGSHFMYIGDENG-----L 140 (1108)
Q Consensus 79 V~~l~fs~-d~~~L~S~s~-d~~I~vWd~~s~~~~~~~~~~----~~Itsl~~-------~~~~~~l~vg~~dg-----~ 140 (1108)
-..|+|.| +...|+.+.. .+.|++.|..++.+....... .....++| ++++++|++.+..+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 46899998 4566666654 467999999998877655332 35899999 99999888887765 2
Q ss_pred EEEEEEecCC-Ceeeeec--eeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEcc
Q 001279 141 MSVIKYDADE-GKLFQLP--YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1108)
Q Consensus 141 V~vw~~d~~~-~~l~~~~--~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~ 208 (1108)
..|..++... +.+...+ ..+.. . ....+++.+|. ++.++++-..++.|..+|+.
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~------------~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAA-Y------------KQCNGATIHPI-NGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEE-E------------SCCCCEEECTT-TCCEEEEETTTTEEEEECHH
T ss_pred ceEEEEecCCCCceeecccceeecc-C------------CCceEEEEcCC-CCeEEEEECCCCEEEEEecc
Confidence 3344443322 2322000 01111 0 33567788885 56656677788899999987
No 306
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.78 E-value=5.8 Score=44.70 Aligned_cols=184 Identities=11% Similarity=-0.044 Sum_probs=110.9
Q ss_pred CEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCe----eeeeec-CCCCee
Q 001279 48 RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRS----LACCLK-WESNIT 121 (1108)
Q Consensus 48 ~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~----~~~~~~-~~~~It 121 (1108)
.+|.... ...|+..++++.........-..+..|+|.+..+.|+-+.. .+.|..+++.... ...... ......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3555554 47899999987766655556667899999987777776654 6779999987632 222222 335678
Q ss_pred EEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE-C-
Q 001279 122 AFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-E- 198 (1108)
Q Consensus 122 sl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~- 198 (1108)
.+++++.+..|+..+. .+.|.+.+++ ....... +... ...+.+|+..|. .+ .|+.+. .
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l---~~~~------------~~~P~~iavdp~-~g-~ly~td~~~ 223 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTL---FREN------------GSKPRAIVVDPV-HG-FMYWTDWGT 223 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEE---EECS------------SCCEEEEEEETT-TT-EEEEEECSS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCC--CCceEEE---EeCC------------CCCcceEEEecc-cC-eEEEEeCCC
Confidence 9999987777777664 5655544443 2222211 1111 145789999884 34 355544 2
Q ss_pred CCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcEEEE
Q 001279 199 NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLW 277 (1108)
Q Consensus 199 dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I~lW 277 (1108)
.+.|...+++......+... .-.....+++. +++..|+.+. ..+.|...
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~-----------------------------~l~~P~glavd-~~~~~lY~aD~~~~~I~~~ 273 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIYSLVTE-----------------------------NIQWPNGITLD-LLSGRLYWVDSKLHSISSI 273 (400)
T ss_dssp SCCEEEEETTSCSCEEEECS-----------------------------SCSCEEEEEEE-TTTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCccEEEEEC-----------------------------CCCceEEEEEE-eCCCEEEEEECCCCEEEEE
Confidence 36777777776533222110 02345678865 7777776664 45678888
Q ss_pred ecCC
Q 001279 278 NTST 281 (1108)
Q Consensus 278 d~~~ 281 (1108)
|+..
T Consensus 274 d~dG 277 (400)
T 3p5b_L 274 DVNG 277 (400)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8753
No 307
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.35 E-value=7.2 Score=48.15 Aligned_cols=195 Identities=13% Similarity=-0.028 Sum_probs=113.9
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCC----ee
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESR----SL 110 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~----~~ 110 (1108)
..-+|.+.++.. +|... ....|+..+++......+......+..|+|.+..++|+.+.. .+.|..+++... ..
T Consensus 385 ~~~~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~ 462 (791)
T 3m0c_C 385 HTKACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 462 (791)
T ss_dssp SCCCCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCceeeeccccc-ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce
Confidence 334555555433 44333 346788888877665555555567889999986666666554 577999998763 22
Q ss_pred eeeec-CCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCC
Q 001279 111 ACCLK-WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1108)
Q Consensus 111 ~~~~~-~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1108)
...+. .-.....+++++.+..||+.+. .+.|.+.+++. ...... +... ...+.+|++.|.
T Consensus 463 ~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~l---~~~~------------l~~P~gIaVDp~- 524 (791)
T 3m0c_C 463 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTL---FREN------------GSKPRAIVVDPV- 524 (791)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEE---EECT------------TCCEEEEEEETT-
T ss_pred eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEEE---EeCC------------CCCcceEEEecC-
Confidence 22222 3355778999998887887764 56665555542 222111 1111 145889999884
Q ss_pred CCCEEEEEE-CC-CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEE
Q 001279 189 SGNRVLIAY-EN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1108)
Q Consensus 189 ~~~~ll~~~-~d-g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1108)
.+. |+.+. .+ +.|.+.++.......+... .-.....|+.. +.+..|+
T Consensus 525 ~g~-LYwtD~g~~~~I~~~~~dG~~~~~lv~~-----------------------------~l~~P~GLavD-~~~~~LY 573 (791)
T 3m0c_C 525 HGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTE-----------------------------NIQWPNGITLD-LLSGRLY 573 (791)
T ss_dssp TTE-EEEEECSSSCEEEEEETTSCCEEEEECS-----------------------------SCSCEEEEEEE-TTTTEEE
T ss_pred CCC-EEEecCCCCCeEEEEecCCCceEEEEeC-----------------------------CCCCceEEEEe-cCCCeEE
Confidence 344 55544 33 6788888877654333211 02345667743 6666666
Q ss_pred EEE-ccCcEEEEecCC
Q 001279 267 VGY-IDGDILLWNTST 281 (1108)
Q Consensus 267 sg~-~DG~I~lWd~~~ 281 (1108)
.+. ..+.|...++..
T Consensus 574 waD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEETTTTEEEEEETTS
T ss_pred EEeCCCCcEEEEecCC
Confidence 654 345677777643
No 308
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.11 E-value=3.2 Score=45.21 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=95.0
Q ss_pred CceEEEEcCCCCEEEEE-ECCCcEEEEecCCcceEE-eCCCCCCEEEEEEeeCCCEEEEEeC--CCcEEEEEcCCCeeee
Q 001279 37 TASILAFDHIQRLLAIA-TLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITN--DNEIQVWSLESRSLAC 112 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~G-s~dG~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~--d~~I~vWd~~s~~~~~ 112 (1108)
.+..+|+++.+..|... ...++|.+++.++..... ....-..-..|++.|.+++|+.+.. .+.|...+........
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 45679999866655554 456899999998754433 3233345689999997777776663 5778888886543322
Q ss_pred eec-CCCCeeEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCC
Q 001279 113 CLK-WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1108)
Q Consensus 113 ~~~-~~~~Itsl~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1108)
... .-.....+++++++..|+.++. .+.|+.++++....+.. +... .....++++. .+
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~-----~~~~------------~~~P~glav~---~~ 219 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV-----VKGS------------LPHPFALTLF---ED 219 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----ECSC------------CSCEEEEEEE---TT
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE-----ecCC------------CCCceEEEEe---CC
Confidence 221 2245689999999888888875 45555555543221111 1111 1446667662 23
Q ss_pred CEEEEEECCCeEEEEEccCCe
Q 001279 191 NRVLIAYENALVILWDVSEAQ 211 (1108)
Q Consensus 191 ~~ll~~~~dg~V~lWdl~~~~ 211 (1108)
..+.+-...+.|..+|..+++
T Consensus 220 ~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 220 ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEecCCCeEEEEECCCCC
Confidence 334444556777788876554
No 309
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.05 E-value=1.3 Score=48.55 Aligned_cols=154 Identities=10% Similarity=0.008 Sum_probs=90.1
Q ss_pred eCCCCCceEEEEcCCCCEEEEEECCCcEEEEec--CCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe
Q 001279 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGG--DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1108)
Q Consensus 32 ~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~--~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~ 109 (1108)
.+.+..+..++++|++.++|+|...+..+-+|. ..-+.+ ..+....+..+.+.+++. ++.++.++.+.+++.+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEE
T ss_pred cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCC-EEEEeCCceEEEecCCCCC
Confidence 355677889999999999988865444444553 222222 334566899999998865 5556678888877543343
Q ss_pred eeeeec-----CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 110 LACCLK-----WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 110 ~~~~~~-----~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
--.... ....+.++.+.+++.++++|. +|.|+ +..|. ..+... +.... .....+.+|.|
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~Dg-G~tW~~----~~~~~---------~~~~~~~~v~~ 300 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDG-GQTWQQ----DVDVK---------KVPSNFYKILF 300 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESST-TSSCEE----CGGGT---------TSSSCCCEEEE
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCC-CcccEE----cCccC---------CCCCCeEEEEE
Confidence 322222 123588888888777666665 56552 22221 112211 11000 00134677888
Q ss_pred ccCCCCCEEEEEECCCeEEEEE
Q 001279 185 HPNSSGNRVLIAYENALVILWD 206 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWd 206 (1108)
.+ ++ .+++++.+|.|.-++
T Consensus 301 ~~--~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 301 FS--PD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EE--TT-EEEEECSTTEEEEEC
T ss_pred EC--CC-ceEEEcCCceEEEEc
Confidence 53 34 488888899765554
No 310
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.99 E-value=1.1 Score=51.28 Aligned_cols=156 Identities=10% Similarity=0.082 Sum_probs=94.0
Q ss_pred EEEEEEeeC--CCEEEEEeCCCcEEEEEcCCCeeeeeecCCCCeeEEEEecCCCEEEEEeCCC---cEEEEEEecCCCee
Q 001279 79 YKNLEFLQN--QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---LMSVIKYDADEGKL 153 (1108)
Q Consensus 79 V~~l~fs~d--~~~L~S~s~d~~I~vWd~~s~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg---~V~vw~~d~~~~~l 153 (1108)
-..|+|.++ .+.|+.+...+.|+.+|..++.+............++++++++ |++++..+ ...++.++...+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee
Confidence 468899984 5667776655899999998888776665556789999999999 77776532 12233333211111
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCCcccccccccCCCC
Q 001279 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPS 232 (1108)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~-~~~~~~~~~~~~~~~~~~~~ 232 (1108)
.. ..+.. ......++++|. ++.++++-..++.|..+|..++.+ ..+... .
T Consensus 220 ~~--~~~~~-------------~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-------------~ 270 (433)
T 4hw6_A 220 ER--LSLCN-------------ARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMM-------------D 270 (433)
T ss_dssp CE--EEEEE-------------CSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEEC-------------S
T ss_pred cc--ccccc-------------cCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEecc-------------C
Confidence 00 00110 133566777764 466344445677889999887765 222211 0
Q ss_pred CCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcEEEEecC
Q 001279 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTS 280 (1108)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I~lWd~~ 280 (1108)
. ...-..++|. |+|.+|+.+. ..+.|+.++..
T Consensus 271 ~---------------~~~~~~ia~d-pdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 271 T---------------KGSNFHIVWH-PTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp C---------------CSSCEEEEEC-TTSSEEEEEETTTTEEEEEEBC
T ss_pred C---------------CCCcccEEEe-CCCCEEEEEeCCCCEEEEEeCC
Confidence 0 1112357864 9999665554 46778887765
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.90 E-value=0.38 Score=53.79 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=74.9
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecC-Cc---c---------e--EEeCC----CCCCEEEEEEee---CCCEEEEE
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGD-GI---E---------G--LLISP----SQLPYKNLEFLQ---NQGFLISI 94 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~-~~---~---------~--~~~~~----h~~~V~~l~fs~---d~~~L~S~ 94 (1108)
.|..+..+|+|.+||+-+. ..|.|-.++ +. . + ....+ ...+|..+.|+| ++..|++.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 7888999999999999975 568887765 21 0 1 11111 357899999998 45799999
Q ss_pred eCCCcEEEEEcCCCe--ee------eeec---CCCCeeEEEEecCCCEEEEEe--CCCcEE
Q 001279 95 TNDNEIQVWSLESRS--LA------CCLK---WESNITAFSVISGSHFMYIGD--ENGLMS 142 (1108)
Q Consensus 95 s~d~~I~vWd~~s~~--~~------~~~~---~~~~Itsl~~~~~~~~l~vg~--~dg~V~ 142 (1108)
..|+.|++||+.... .. ..++ ....|.+++|.+++-.|++.+ ++|.|+
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 999999999998631 11 1111 125789999999877777755 778664
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.87 E-value=8.5 Score=41.48 Aligned_cols=116 Identities=13% Similarity=0.201 Sum_probs=81.7
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-eeeeeec-C-
Q 001279 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK-W- 116 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~~~~~~-~- 116 (1108)
+.-.+|..+.||.=. ...+.|||++..+.+....-..+|..=.|..+ ..|+-++ +..|.-|+++.. .+...+. |
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 445699999999987 78899999999988866666678999999776 4566665 778999999753 3333331 1
Q ss_pred ---CCCeeEEEEecCCCEEEEEeC---C----CcEEEEEEecCCCeeeeeceeecccc
Q 001279 117 ---ESNITAFSVISGSHFMYIGDE---N----GLMSVIKYDADEGKLFQLPYNISADA 164 (1108)
Q Consensus 117 ---~~~Itsl~~~~~~~~l~vg~~---d----g~V~vw~~d~~~~~l~~~~~~i~~~~ 164 (1108)
...|.....+++.+|+++.+- + |.+.++..+ .+..|. +.+|-
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e---r~~sQ~---ieGha 199 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD---RKVSQP---IEGHA 199 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT---TTEEEE---ECCSE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec---ccccce---eeeee
Confidence 357999999999998775432 3 455555444 344433 55553
No 313
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.69 E-value=2.2 Score=46.21 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=97.0
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeec-cCCCCCeEEEEE---EeCCCeEEEEec-------------
Q 001279 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-AGSRAPVSTLSF---CFINSSLAVGNE------------- 556 (1108)
Q Consensus 494 ~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l-~~h~~~Vt~laf---s~d~~~Lasg~~------------- 556 (1108)
++.++++.-..|+|..||...+....+ .+.. +.- ......+..|.| .|+++++++...
T Consensus 24 ~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~----~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 24 RQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDG----ASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp TTEEEEEETTTTEEEEECTTTCCEEEE-CCTT----TCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred CCEEEEEeccCCEEEEEcCCCCeEEEE-ecCC----ccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 455666666899999999986654322 1110 000 011123578999 688888886542
Q ss_pred CceEEEEEec---CCCCCccccccccCccceeecccCCcceEEEEEee-----------cCcCEEEEEEcCCCCEEEEEe
Q 001279 557 FGLVYIYNLN---GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-----------VNSPVRALQFTSSGAKLAVGF 622 (1108)
Q Consensus 557 dG~V~lw~l~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------h~~~Vtslafspdg~~LavGs 622 (1108)
+..|..|++. +.... ....+.. -......|+..++|+.-++++
T Consensus 99 ~~~v~~~Dl~~~~tg~~~-----------------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s 155 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPV-----------------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA 155 (334)
T ss_dssp CCEEEEEESSCCTTCCCS-----------------------EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCcCCCCCEE-----------------------EEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence 5678888887 33110 1111111 113478999999999999999
Q ss_pred CC-CeEEEEEccCceEE-EEeec-CCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeC
Q 001279 623 EC-GRVAVLDMNLLSVL-FFTDD-ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1108)
Q Consensus 623 ~d-G~V~vwd~~~~~~~-~~~~~-~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~ 699 (1108)
.. +.|..++..+..+. +-... .....-....++|. |++..|++...+|.|..+|.
T Consensus 156 ~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~----------------------pdg~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 156 LGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFD----------------------PHSNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp ESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEE----------------------TTTTEEEEESSSSSEEEEEC
T ss_pred CCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEe----------------------CCCCEEEEEcCCCeEEEEcC
Confidence 88 88888888776433 11111 01122234566777 66777888877999999997
Q ss_pred C
Q 001279 700 S 700 (1108)
Q Consensus 700 ~ 700 (1108)
.
T Consensus 214 ~ 214 (334)
T 2p9w_A 214 S 214 (334)
T ss_dssp S
T ss_pred C
Confidence 6
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.10 E-value=19 Score=43.15 Aligned_cols=183 Identities=10% Similarity=-0.004 Sum_probs=111.3
Q ss_pred CEEEEEECCCcEEEEecCCcceEEe--CCCCCCEEEEEEeeCCCEEEEEe-CCCcEEEEEcCCCeeeeeecCC-CCeeEE
Q 001279 48 RLLAIATLDGRIKVIGGDGIEGLLI--SPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLKWE-SNITAF 123 (1108)
Q Consensus 48 ~~LA~Gs~dG~I~iw~~~~~~~~~~--~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWd~~s~~~~~~~~~~-~~Itsl 123 (1108)
.+|..+ ....|+..++++...... ...-.....|+|.+..+.|+-+. .++.|..+++............ .....+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 355554 467899999876543322 22334688999999777777665 4678999998766444333322 457789
Q ss_pred EEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC--CC
Q 001279 124 SVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NA 200 (1108)
Q Consensus 124 ~~~~~~~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg 200 (1108)
++++.+..|+..+. .+.|.+.+++....+.. +.. . .....+|++.|. .|. |+.+.. .+
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-----~~~-~-----------l~~P~~iavdp~-~G~-lY~tD~g~~~ 146 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-----VWK-D-----------LDSPRALALDPA-EGF-MYWTEWGGKP 146 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEE-----ECS-S-----------CCCEEEEEEETT-TTE-EEEEECSSSC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-----EeC-C-----------CCCcccEEEccC-CCe-EEEeCCCCCC
Confidence 99988887777765 45555555443211111 111 1 145789999885 454 555542 45
Q ss_pred eEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcEEEEec
Q 001279 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNT 279 (1108)
Q Consensus 201 ~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I~lWd~ 279 (1108)
.|...+++......+... -.....++.. +++..|+.+. ..+.|...++
T Consensus 147 ~I~r~~~dG~~~~~l~~~------------------------------~~~P~GlalD-~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 147 KIDRAAMDGSERTTLVPN------------------------------VGRANGLTID-YAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEEEEETTSCSCEEEECS------------------------------CSSEEEEEEE-TTTTEEEEEETTTTEEEEEET
T ss_pred EEEEEeCCCCceEEEECC------------------------------CCCcceEEEc-cccCEEEEEECCCCEEEEEcC
Confidence 777777766543322211 2345677754 7666666664 4567888887
Q ss_pred CC
Q 001279 280 ST 281 (1108)
Q Consensus 280 ~~ 281 (1108)
..
T Consensus 196 dG 197 (628)
T 4a0p_A 196 LG 197 (628)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.98 E-value=13 Score=40.92 Aligned_cols=157 Identities=14% Similarity=0.215 Sum_probs=94.5
Q ss_pred CCCCCceEEEEcCCCCEEEEE------------ECCCcEEEEecCCc----ceEEeCC-----CCCCEEEEEEee--CC-
Q 001279 33 GIPATASILAFDHIQRLLAIA------------TLDGRIKVIGGDGI----EGLLISP-----SQLPYKNLEFLQ--NQ- 88 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~G------------s~dG~I~iw~~~~~----~~~~~~~-----h~~~V~~l~fs~--d~- 88 (1108)
|.......+++.|+|..+.++ ..+|.|.+||.+.. +.+...+ ....-..|.+.+ ++
T Consensus 47 ~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 47 GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp TCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred CCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence 434467788899987554443 26899999998621 2222222 223566777766 34
Q ss_pred CEEEEEeC---CCcEEEEEcCCC--e--eeeeecCC--CCeeEEEEecCCCEEEEEeC---C------------CcEEEE
Q 001279 89 GFLISITN---DNEIQVWSLESR--S--LACCLKWE--SNITAFSVISGSHFMYIGDE---N------------GLMSVI 144 (1108)
Q Consensus 89 ~~L~S~s~---d~~I~vWd~~s~--~--~~~~~~~~--~~Itsl~~~~~~~~l~vg~~---d------------g~V~vw 144 (1108)
.+|+.+.. +..|.+|+++.. . ++..+.+. ...+.+.+.+++.+.++..- + ..=+||
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 36666643 467889887653 2 23333322 46889999999987766541 1 223567
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE-CCCeEEEEEccC
Q 001279 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSE 209 (1108)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~lWdl~~ 209 (1108)
.++.. ++... ..+ + ....+++|+| +++.|+++. ..+.|..|++..
T Consensus 207 r~d~~--~~~~~---~~~--l-----------~~pNGia~sp--Dg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 207 YYSPN--DVRVV---AEG--F-----------DFANGINISP--DGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EECTT--CCEEE---EEE--E-----------SSEEEEEECT--TSSEEEEEEGGGTEEEEEEECT
T ss_pred EEECC--eEEEe---ecC--C-----------cccCcceECC--CCCEEEEEeCCCCeEEEEEECC
Confidence 77653 22211 111 1 4478999988 777677665 467899999864
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.02 E-value=6.7 Score=43.26 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=65.7
Q ss_pred cccceeeeeeCCCCCceEEEEcCCCCEEEEEECCCcEEEEecCCcce-EEe----CCCCCCEEEEEEeeC---CCEEEEE
Q 001279 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLI----SPSQLPYKNLEFLQN---QGFLISI 94 (1108)
Q Consensus 23 ~~~~~~~~~~G~~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~-~~~----~~h~~~V~~l~fs~d---~~~L~S~ 94 (1108)
.+..+.... |+. .+..++|+|+++++ ++..+|+|++++ ++... +.. .........|+|+|+ +++|..+
T Consensus 20 ~~~~~~va~-~l~-~P~~ia~~pdG~l~-V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 20 GLRVEEVVG-GLE-VPWALAFLPDGGML-IAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CCCEEEEEC-CCS-CEEEEEECTTSCEE-EEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CcEEEEEEC-CCC-CceEEEEcCCCeEE-EEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 344443332 433 56789999999955 556789999998 44321 111 122446789999998 5555544
Q ss_pred eC-C-----CcEEEEEcCCCe------eeeeecC-C---CCeeEEEEecCCCEEEEEe
Q 001279 95 TN-D-----NEIQVWSLESRS------LACCLKW-E---SNITAFSVISGSHFMYIGD 136 (1108)
Q Consensus 95 s~-d-----~~I~vWd~~s~~------~~~~~~~-~---~~Itsl~~~~~~~~l~vg~ 136 (1108)
.. . +.|..|+..... ++..+.. . .....++|.|++. |+++.
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 43 2 678888887542 2222221 1 1346889999985 55554
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.87 E-value=3.6 Score=45.52 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=61.1
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEe----CCCCCCEEEEEEeeC---CCEEEEEeC----C----CcE
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI----SPSQLPYKNLEFLQN---QGFLISITN----D----NEI 100 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~----~~h~~~V~~l~fs~d---~~~L~S~s~----d----~~I 100 (1108)
..+..|+|+|+++ |.++..+|+|++++.++.+.+.. .........|+|+|+ +++|..+.. + +.|
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4578899999998 45567779999998665422221 122356889999997 555554433 3 668
Q ss_pred EEEEcCCC-------e-eeeeecC--CCCeeEEEEecCCCEEEEE
Q 001279 101 QVWSLESR-------S-LACCLKW--ESNITAFSVISGSHFMYIG 135 (1108)
Q Consensus 101 ~vWd~~s~-------~-~~~~~~~--~~~Itsl~~~~~~~~l~vg 135 (1108)
..|+.... + ++..+.. ......++|.|++. |+++
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt 151 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYIT 151 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEE
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEE
Confidence 88887654 1 1122221 11345789999986 4444
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.45 E-value=21 Score=40.01 Aligned_cols=205 Identities=11% Similarity=0.142 Sum_probs=129.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-eeeeeec-C-
Q 001279 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK-W- 116 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~~~~~~-~- 116 (1108)
+.-.+|..++||.=. ...+.|||++..+.+....-..+|..=.|..+ ..|+-++ +..|.-|++... .+...+. |
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecch
Confidence 456789999999987 78899999999888766666678999999776 4566665 788999999753 3333331 1
Q ss_pred ---CCCeeEEEEecCCCEEEEEeC-------CCcEEEEEEecCCCeeeee---------ceeeccccc------------
Q 001279 117 ---ESNITAFSVISGSHFMYIGDE-------NGLMSVIKYDADEGKLFQL---------PYNISADAL------------ 165 (1108)
Q Consensus 117 ---~~~Itsl~~~~~~~~l~vg~~-------dg~V~vw~~d~~~~~l~~~---------~~~i~~~~~------------ 165 (1108)
...|.....+++.+|+++.+- .|.+.++..+.. ..|. .+++++...
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~---~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC---CEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc---ccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 357999999999998874431 355666554431 1110 011111100
Q ss_pred -----------------------ccccCCC-CCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcc
Q 001279 166 -----------------------SEKAGFP-LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDL 221 (1108)
Q Consensus 166 -----------------------~~~~~~~-~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~ 221 (1108)
....+++ ....+-..++..++ ....+++-..-|.|.+||+.++.++....-
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~--kygviyviTK~G~i~lyDleTgt~i~~nrI--- 298 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE--KHDVVFLITKYGYIHLYDLETGTCIYMNRI--- 298 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET--TTTEEEEEETTSEEEEEETTTCCEEEEEEC---
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc--cCCEEEEEecCceEEEEecccceeeeeecc---
Confidence 0000111 12234456666655 344588999999999999999988765422
Q ss_pred cccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEccCcEEEEecCCC
Q 001279 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1108)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1108)
. ...|-..|-. ....-+++....|.|.--.++..
T Consensus 299 ------s--------------------~~~iF~t~~~-~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 299 ------S--------------------GETIFVTAPH-EATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ------C--------------------SSCEEEEEEE-TTTTEEEEEETTCEEEEEEECTT
T ss_pred ------c--------------------CCceEEeccc-CCCCcEEEEccCceEEEEEEccc
Confidence 1 4445555533 34445666668888777766544
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.08 E-value=3.7 Score=45.47 Aligned_cols=101 Identities=9% Similarity=-0.020 Sum_probs=59.5
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcce--EE-----eCCCCCCEEEEEEeeC---CCEEEEE-eC-------CC
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LL-----ISPSQLPYKNLEFLQN---QGFLISI-TN-------DN 98 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~--~~-----~~~h~~~V~~l~fs~d---~~~L~S~-s~-------d~ 98 (1108)
.+..|+|+|+++.|.++...|+|++++.++... +. ..........|+|+|+ .++|..+ +. .+
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 467899999999444667889999998654321 11 1122346789999995 4445444 32 23
Q ss_pred cEEEEEcCCC-------e-eeeeecC----CCCeeEEEEecCCCEEEEEeCC
Q 001279 99 EIQVWSLESR-------S-LACCLKW----ESNITAFSVISGSHFMYIGDEN 138 (1108)
Q Consensus 99 ~I~vWd~~s~-------~-~~~~~~~----~~~Itsl~~~~~~~~l~vg~~d 138 (1108)
.|..|++... + ++..+.. ......++|.|++ +|+++..+
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd 149 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE 149 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence 5777776532 1 1111111 1124579999998 55555433
No 320
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=89.77 E-value=0.023 Score=57.20 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=42.6
Q ss_pred CCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHH
Q 001279 1039 RTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANEL 1096 (1108)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~ 1096 (1108)
..+..|+.. -.++-..+..+=+++.||||||+.|.+||+.|++.|+.|-.-|++|
T Consensus 138 d~l~~~q~e---l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~l 192 (199)
T 3kyq_A 138 DPMSKVQAE---LDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQ 192 (199)
T ss_dssp CCCHHHHHH---HHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHH---HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455444 2233345556677899999999999999999999999999999986
No 321
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.49 E-value=1.3 Score=54.17 Aligned_cols=159 Identities=9% Similarity=-0.041 Sum_probs=88.6
Q ss_pred ccC-CCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC--ceEEEEEec
Q 001279 490 KCH-SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF--GLVYIYNLN 566 (1108)
Q Consensus 490 ~~s-~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d--G~V~lw~l~ 566 (1108)
++. ..+++|++-...+.|.+.+..+.....+. .........|+++|.+++|..+... +.|.++++.
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-----------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-----------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-----------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 454 45677887777888999998766544211 1111235678899977766655532 556655554
Q ss_pred CCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEE-eCCCeEEEEEccCceEEEEeecCC
Q 001279 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG-FECGRVAVLDMNLLSVLFFTDDIS 645 (1108)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavG-s~dG~V~vwd~~~~~~~~~~~~~~ 645 (1108)
..... ......-..-..|+|+|++..|.+. +..+.|.++|+.+......... .
T Consensus 528 G~~~~-------------------------~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~-~ 581 (699)
T 1n7d_A 528 GVDIY-------------------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-E 581 (699)
T ss_dssp SCCCC-------------------------EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC-S
T ss_pred CCCee-------------------------EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec-C
Confidence 32110 0011112235679999976555544 5667899999876432211110 0
Q ss_pred CCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCccEEEEeCCCcceecCC
Q 001279 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1108)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L~s~s~Dg~v~v~d~~~g~~l~~~ 708 (1108)
+.-.....|.+. . +.++++....+.|.++|..+|+.+...
T Consensus 582 ~~~~~P~glavd----------------------~-~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 582 KRLAHPFSLAVF----------------------E-DKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp SSCSSCCCCEEE----------------------T-TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred CcCCCceEeEEE----------------------C-CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 011111222332 1 345556667789999999888866443
No 322
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=88.79 E-value=46 Score=39.71 Aligned_cols=178 Identities=9% Similarity=-0.008 Sum_probs=97.9
Q ss_pred CCCcEEEEecCCc--ceEEeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCee-eeeecC-CCCeeEEEEecCC
Q 001279 55 LDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSL-ACCLKW-ESNITAFSVISGS 129 (1108)
Q Consensus 55 ~dG~I~iw~~~~~--~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~~-~~~~~~-~~~Itsl~~~~~~ 129 (1108)
....|+..++++. +.......-.....|+|.+.++.|+-+.. .+.|..+++..... ...... -.....+++++.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 4567888888754 33344444456789999997777776664 57799999876532 222222 2568899999987
Q ss_pred CEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC--CCeEEEEE
Q 001279 130 HFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWD 206 (1108)
Q Consensus 130 ~~l~vg~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~--dg~V~lWd 206 (1108)
..|++++. .+.|.+.+++....+.. +... ...+.+|++.|. .+. |+.+.. .+.|...+
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l-----~~~~------------l~~P~~Iavdp~-~g~-ly~tD~g~~~~I~r~~ 156 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVL-----FWQE------------LDQPRAIALDPS-SGF-MYWTDWGEVPKIERAG 156 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEE-----ECSS------------CSCCCCEEEETT-TTE-EEEEECSSSCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEE-----EeCC------------CCCCceEEEecC-CCe-EEEeccCCCCEEEEEE
Confidence 77777764 56666666553211111 1111 144678888774 344 554442 34565566
Q ss_pred ccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCcEEEEecCC
Q 001279 207 VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTST 281 (1108)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~I~lWd~~~ 281 (1108)
++......+... .-.....++.. +++..|+.+. ..+.|...++..
T Consensus 157 ~dG~~~~~l~~~-----------------------------~~~~P~Glald-~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 157 MDGSSRFIIINS-----------------------------EIYWPNGLTLD-YEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp TTSCSCEEEECS-----------------------------SCSSEEEEEEE-TTTTEEEEEETTTCCEEEESSSC
T ss_pred CCCCceEEEEeC-----------------------------CCCCCcEEEEE-ccCCEEEEEeCCCCeEEEecCCC
Confidence 655432222110 02345667754 6666666554 456677777753
No 323
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.41 E-value=31 Score=37.35 Aligned_cols=152 Identities=10% Similarity=0.098 Sum_probs=90.7
Q ss_pred CCCEEEEEECCCcEEEEecCCc--------ceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC--C--------
Q 001279 46 IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE--S-------- 107 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~--s-------- 107 (1108)
+..++++.+.+|.|+.-.+..- ..+.+. ....+..+........|+..+..|.+..+.+. .
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 5789999999999999876321 111222 34566666666666789999999998777765 2
Q ss_pred -CeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC-CCCCCeEEEecc
Q 001279 108 -RSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL-LSHQPVVGVLPH 185 (1108)
Q Consensus 108 -~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~-~~~~~V~~v~f~ 185 (1108)
|...-.+.....|.++...+...++++.++.|.++...++. |....-.-........ ...+.+..+..-
T Consensus 187 ~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e---------~~~~~R~~~G~~~~~l~~~~d~lv~~~~~ 257 (327)
T 3uc1_A 187 SGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE---------YPVQGRGGKGVLTVMYDRRRGRLVGALIV 257 (327)
T ss_dssp BCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG---------SCBCCTTSCCEESSCCCTTTCSEEEEEEE
T ss_pred CCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH---------ccccCcCCCcEEEEEecCCCCeEEEEEEe
Confidence 11112233446788887777777999999999887766543 1111000000000000 112345555442
Q ss_pred cCCCCCEEEEEECCCeEEEEEccC
Q 001279 186 PNSSGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 186 P~~~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
. +...+++.+.+|.+.-++...
T Consensus 258 ~--~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 258 D--DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp C--TTCEEEEEEGGGCEEEEEGGG
T ss_pred C--CCccEEEEcCCCeEEEEehhh
Confidence 2 334578888888877777655
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=87.06 E-value=27 Score=39.91 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=40.5
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee--eec-------CCCCeeEEEEecC---CCEEEEEeC
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC--CLK-------WESNITAFSVISG---SHFMYIGDE 137 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~--~~~-------~~~~Itsl~~~~~---~~~l~vg~~ 137 (1108)
.-..|+|.|+|..+++-...+.|.+++..++.... .+. ....+..++++|+ +.+|++...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 45699999998766665444578888876554322 221 2356779999997 777777764
No 325
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=85.88 E-value=72 Score=38.93 Aligned_cols=198 Identities=12% Similarity=0.180 Sum_probs=111.6
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeC--CCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001279 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS--PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1108)
Q Consensus 35 ~~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~--~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~ 112 (1108)
...|.+|.-|.+|.+- +|+.+| +..||.......... .....|.++....++ .|-.++.+ -+..+|..+.+...
T Consensus 21 ~n~V~~I~qD~~G~lW-igT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~-Gl~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW-IGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDN-GILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSCEE-EEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETT-EEEEEETTTTEECC
T ss_pred cceEEEEEECCCCCEE-EEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCC-CeEEEeCCCCEEEC
Confidence 3568999999888655 678888 556775432221111 123468888777664 56666654 48899988875543
Q ss_pred ee-cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCC
Q 001279 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1108)
Q Consensus 113 ~~-~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1108)
.. .....|.++.. . ...|.+|+.+| + +.++...+++.. |..... +. ....|.++.... ++.
T Consensus 97 ~~~~~~~~i~~i~~-~-~g~lWigt~~G-l--~~~~~~~~~~~~--~~~~~~------~l---~~~~i~~i~~d~--~g~ 158 (758)
T 3ott_A 97 PETDFPTDVRTMAL-Q-GDTLWLGALNG-L--YTYQLQSRKLTS--FDTRRN------GL---PNNTIYSIIRTK--DNQ 158 (758)
T ss_dssp CSCCCCSCEEEEEE-E-TTEEEEEETTE-E--EEEETTTCCEEE--ECHHHH------CC---SCSCEEEEEECT--TCC
T ss_pred cccCCCceEEEEEe-c-CCcEEEEcCCc-c--eeEeCCCCeEEE--eccCCC------Cc---CCCeEEEEEEcC--CCC
Confidence 11 12235777654 3 34677777765 4 444544444442 210000 00 114588887743 566
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEEcc
Q 001279 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1108)
Q Consensus 192 ~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~D 271 (1108)
|.++..+| +..+|..+++...+... .. . ......|.+++.. +++..|..|...
T Consensus 159 -lWigt~~G-l~~~~~~~~~~~~~~~~-------------~~--~---------~~~~~~i~~i~~d-~~~~~lWigt~~ 211 (758)
T 3ott_A 159 -IYVGTYNG-LCRYIPSNGKFEGIPLP-------------VH--S---------SQSNLFVNSLLED-TTRQCVWIGTEG 211 (758)
T ss_dssp -EEEEETTE-EEEEETTTTEEEEECCC-------------CC--T---------TCSSCCEEEEEEE-TTTTEEEEEEEE
T ss_pred -EEEEeCCC-HhhCccCCCceEEecCC-------------Cc--c---------ccccceeEEEEEE-CCCCEEEEEECC
Confidence 77777665 56788877765433110 00 0 0013357888754 666766666654
Q ss_pred CcEEEEecCCC
Q 001279 272 GDILLWNTSTT 282 (1108)
Q Consensus 272 G~I~lWd~~~~ 282 (1108)
-|..++..+.
T Consensus 212 -Gl~~~~~~~~ 221 (758)
T 3ott_A 212 -YLFQYFPSTG 221 (758)
T ss_dssp -EEEEEETTTT
T ss_pred -CCeEEcCCCC
Confidence 4777886543
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=85.77 E-value=11 Score=40.00 Aligned_cols=25 Identities=28% Similarity=0.141 Sum_probs=19.1
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCceEE
Q 001279 614 SGAKLAVGFECG-----RVAVLDMNLLSVL 638 (1108)
Q Consensus 614 dg~~LavGs~dG-----~V~vwd~~~~~~~ 638 (1108)
+++++++|+.++ .+.+||+.+.+..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 577888887653 6889999887655
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.60 E-value=1.9 Score=43.73 Aligned_cols=98 Identities=10% Similarity=-0.041 Sum_probs=63.1
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCc-------ceEEe--CCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGI-------EGLLI--SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~-------~~~~~--~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~ 106 (1108)
..++.++|+|++.+-|+ .+|.++-.+.... ....+ .+-+. ..++.|.++|.+.++ .|+.|.=|+-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 37889999999999888 6787666665331 11111 11222 689999999765555 56998888753
Q ss_pred CCe-ee-----eeecC--CCCeeEEEEecCCCEEEEEeCCCc
Q 001279 107 SRS-LA-----CCLKW--ESNITAFSVISGSHFMYIGDENGL 140 (1108)
Q Consensus 107 s~~-~~-----~~~~~--~~~Itsl~~~~~~~~l~vg~~dg~ 140 (1108)
+.. -. ..+.. -..+.++.+.|++.+.++. +|.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 321 11 11111 1367999999999987777 674
No 328
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=85.49 E-value=24 Score=38.64 Aligned_cols=60 Identities=10% Similarity=0.002 Sum_probs=36.3
Q ss_pred CCceEEEEcCC---CCEEEEEEC-C-----CcEEEEecCCc-----ceEEe-CC----CCCCEEEEEEeeCCCEEEEEe
Q 001279 36 ATASILAFDHI---QRLLAIATL-D-----GRIKVIGGDGI-----EGLLI-SP----SQLPYKNLEFLQNQGFLISIT 95 (1108)
Q Consensus 36 ~~is~la~sp~---~~~LA~Gs~-d-----G~I~iw~~~~~-----~~~~~-~~----h~~~V~~l~fs~d~~~L~S~s 95 (1108)
.....|+|+|+ ++.|.++.. . ++|..|+.+.. +.++. .+ ....-..|+|.|||...++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 46788999998 555544433 2 67888887642 22221 11 111236899999986666654
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=85.20 E-value=48 Score=36.30 Aligned_cols=157 Identities=15% Similarity=0.211 Sum_probs=84.6
Q ss_pred CEEEEEEeeCCCEEEEE------------eCCCcEEEEEcCCC--ee--eeeec--C---CCCeeEEEEecC--CC-EEE
Q 001279 78 PYKNLEFLQNQGFLISI------------TNDNEIQVWSLESR--SL--ACCLK--W---ESNITAFSVISG--SH-FMY 133 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~------------s~d~~I~vWd~~s~--~~--~~~~~--~---~~~Itsl~~~~~--~~-~l~ 133 (1108)
....+...++|..++++ ..+|.|.++|..+. +. +.... . .-....+.+.++ +. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34556667765443333 16889999998743 22 22222 1 136777887663 33 565
Q ss_pred EEe-C--CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEEC----C-------
Q 001279 134 IGD-E--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----N------- 199 (1108)
Q Consensus 134 vg~-~--dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----d------- 199 (1108)
+.. . +..|.+|+++...+.+... -.+.+.. ......+...| +|. ++++.. |
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~-~~~~g~~-----------~~~pND~~v~~--~G~-fyvt~~~~ftd~~~~~~e 195 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHL-KTIRHKL-----------LPSVNDIVAVG--PEH-FYATNDHYFIDPYLKSWE 195 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEE-EEECCTT-----------CSSEEEEEEEE--TTE-EEEEESCSCSSHHHHHHH
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEE-eccccCC-----------CCCCceEEEeC--CCC-EEecCCcEeCCcccccch
Confidence 553 2 5678899998765544321 1222211 14577788866 565 444332 1
Q ss_pred -----CeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCCEEEEEE-ccCc
Q 001279 200 -----ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGD 273 (1108)
Q Consensus 200 -----g~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~-~DG~ 273 (1108)
..=.||-++.+++...... -..-..++| +||++.|+.+. ..+.
T Consensus 196 ~~~~~~~g~vyr~d~~~~~~~~~~------------------------------l~~pNGia~-spDg~~lYvadt~~~~ 244 (355)
T 3sre_A 196 MHLGLAWSFVTYYSPNDVRVVAEG------------------------------FDFANGINI-SPDGKYVYIAELLAHK 244 (355)
T ss_dssp HHTTCCCEEEEEECTTCCEEEEEE------------------------------ESSEEEEEE-CTTSSEEEEEEGGGTE
T ss_pred hhccCCccEEEEEECCeEEEeecC------------------------------CcccCcceE-CCCCCEEEEEeCCCCe
Confidence 1112333222222111100 223567897 49999887776 4678
Q ss_pred EEEEecC
Q 001279 274 ILLWNTS 280 (1108)
Q Consensus 274 I~lWd~~ 280 (1108)
|..|++.
T Consensus 245 I~~~~~~ 251 (355)
T 3sre_A 245 IHVYEKH 251 (355)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999886
No 330
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.19 E-value=28 Score=36.81 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=73.5
Q ss_pred CCCEEEEEECC-----CcEEEEecCCcc---eEEeCCCCC-CEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCeee
Q 001279 46 IQRLLAIATLD-----GRIKVIGGDGIE---GLLISPSQL-PYKNLEFLQNQGFLISITND-----NEIQVWSLESRSLA 111 (1108)
Q Consensus 46 ~~~~LA~Gs~d-----G~I~iw~~~~~~---~~~~~~h~~-~V~~l~fs~d~~~L~S~s~d-----~~I~vWd~~s~~~~ 111 (1108)
++.+++.|+.+ ..+.+||..... ......-.. .........++..++.++.+ +.+.++|..+.+-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 56777777755 458888876544 332222111 11111122244444555432 46899998887533
Q ss_pred e--eecCCCCeeEEEEecCCCEEEEEeCCCc---EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEeccc
Q 001279 112 C--CLKWESNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1108)
Q Consensus 112 ~--~~~~~~~Itsl~~~~~~~~l~vg~~dg~---V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1108)
. .+.....-.++++ .++.+++.|+.++. -.+|.|+....+....+ .++. .. ....++.+
T Consensus 142 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~-----------~r-~~~~~~~~-- 205 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMAT-----------KR-SGAGVALL-- 205 (301)
T ss_dssp EEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCSS-----------CC-BSCEEEEE--
T ss_pred ECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCCc-----------cc-ccceEEEE--
Confidence 2 2222211122222 25666666665431 23455665545544321 0110 00 11223333
Q ss_pred CCCCCEEEEEECC-----CeEEEEEccCCeEEEE
Q 001279 187 NSSGNRVLIAYEN-----ALVILWDVSEAQIIFV 215 (1108)
Q Consensus 187 ~~~~~~ll~~~~d-----g~V~lWdl~~~~~~~~ 215 (1108)
++..++.|+.+ ..+.+||+.+.+-...
T Consensus 206 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 237 (301)
T 2vpj_A 206 --NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237 (301)
T ss_dssp --TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred --CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence 45555666553 4678899988865544
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=84.61 E-value=82 Score=38.44 Aligned_cols=152 Identities=9% Similarity=0.097 Sum_probs=88.1
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEecCCcceEEeC-----CCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCee
Q 001279 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-----PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1108)
Q Consensus 36 ~~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~-----~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~ 110 (1108)
..|.++.. .+ ..|-+|+.+ -|..|+.......... .....|.++....++...+ ++. +-|..+|..+++.
T Consensus 103 ~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~ 177 (758)
T 3ott_A 103 TDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKF 177 (758)
T ss_dssp SCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEE
T ss_pred ceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCce
Confidence 34666654 33 456667766 4777887554433221 1134678887776665554 444 4577888877754
Q ss_pred eeee-cC-----CCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 111 ACCL-KW-----ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 111 ~~~~-~~-----~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
.... .. ...|.++..+.++..|.+|+..| + +.++...+++... ..++. ..|.++..
T Consensus 178 ~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~G-l--~~~~~~~~~~~~~-~~l~~--------------~~i~~i~~ 239 (758)
T 3ott_A 178 EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGY-L--FQYFPSTGQIKQT-EAFHN--------------NSIKSLAL 239 (758)
T ss_dssp EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEE-E--EEEETTTTEEEEE-EEEEE--------------EEEEEEEE
T ss_pred EEecCCCccccccceeEEEEEECCCCEEEEEECCC-C--eEEcCCCCeEEec-cCCCC--------------CeEEEEEE
Confidence 3221 11 12488888888777777777544 3 4455544554421 11211 34788877
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEE
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIF 214 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~ 214 (1108)
.+ ++. |.+|..+| +.++|..+++...
T Consensus 240 d~--~g~-lWigT~~G-l~~~~~~~~~~~~ 265 (758)
T 3ott_A 240 DG--NGD-LLAGTDNG-LYVYHNDTTPLQH 265 (758)
T ss_dssp CT--TCC-EEEEETTE-EEEECCTTSCCEE
T ss_pred cC--CCC-EEEEeCCc-eeEEecCCCcEEE
Confidence 33 676 78888655 5778877765543
No 332
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=84.54 E-value=13 Score=39.41 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=57.3
Q ss_pred CCcEEEEEecCC-----cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC-----ceEEEE
Q 001279 494 VDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF-----GLVYIY 563 (1108)
Q Consensus 494 ~~~llatgs~DG-----tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d-----G~V~lw 563 (1108)
++.+++.|+.++ .+.+||..+.....+..+... ...| .++. .++++++.|+.+ ..+.+|
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-----REGA----GLVV--ASGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-----CBSC----EEEE--ETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-----cccc----eEEE--ECCEEEEECCCCCCcccceEEEE
Confidence 566888886543 478888877765533222110 1111 2222 277788888765 346666
Q ss_pred EecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCceEE
Q 001279 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC-----GRVAVLDMNLLSVL 638 (1108)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~d-----G~V~vwd~~~~~~~ 638 (1108)
++....= ..+ ..+......-.++. -+++++++|+.+ ..|.+||+.+.+..
T Consensus 181 d~~~~~W--------------~~~---------~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 181 DPHTGHW--------------TNV---------TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp ETTTTEE--------------EEE---------CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eCCCCcE--------------EeC---------CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 6655310 000 00000000111122 256788888764 46899999888765
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=83.82 E-value=16 Score=47.34 Aligned_cols=105 Identities=10% Similarity=0.193 Sum_probs=74.5
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC-eeeeee-cC-
Q 001279 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCL-KW- 116 (1108)
Q Consensus 40 ~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~-~~~~~~-~~- 116 (1108)
+.-.+|..++||.=. ...+.|||++..+.+....-..+|..=.|..+ ..|+-++ +..|.-|++... .+...+ .|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 344688999999986 78899999988877765555668988888765 3455554 778999999653 232222 11
Q ss_pred ---CCCeeEEEEecCCCEEEEEe-------CCCcEEEEEEe
Q 001279 117 ---ESNITAFSVISGSHFMYIGD-------ENGLMSVIKYD 147 (1108)
Q Consensus 117 ---~~~Itsl~~~~~~~~l~vg~-------~dg~V~vw~~d 147 (1108)
...|.....+++.+|+++.+ -.|.+.++..+
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 35788999999999887443 24667776665
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=83.69 E-value=27 Score=36.91 Aligned_cols=152 Identities=9% Similarity=0.010 Sum_probs=72.3
Q ss_pred CCCEEEEEECC-----CcEEEEecCCcceEEeCCCCC-CEEEEEEeeCCCEEEEEeCC-----CcEEEEEcCCCeeeee-
Q 001279 46 IQRLLAIATLD-----GRIKVIGGDGIEGLLISPSQL-PYKNLEFLQNQGFLISITND-----NEIQVWSLESRSLACC- 113 (1108)
Q Consensus 46 ~~~~LA~Gs~d-----G~I~iw~~~~~~~~~~~~h~~-~V~~l~fs~d~~~L~S~s~d-----~~I~vWd~~s~~~~~~- 113 (1108)
++.+++.|+.+ ..+.+||....+-.....-.. ........-++..++.++.+ +.+.+||..+.+-...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 56677777654 347777776554433322111 11111112255555556544 3588899887754332
Q ss_pred -ecCCCCeeEEEEecCCCEEEEEeCCCc-----EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccC
Q 001279 114 -LKWESNITAFSVISGSHFMYIGDENGL-----MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1108)
Q Consensus 114 -~~~~~~Itsl~~~~~~~~l~vg~~dg~-----V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1108)
+.....-.++++ -++..++.|+.++. -.+|.|+....+....+ .++ ... .....+.+
T Consensus 141 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p-----------~~r-~~~~~~~~--- 203 (302)
T 2xn4_A 141 PMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMS-----------TRR-SGAGVGVL--- 203 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCS-----------SCC-BSCEEEEE---
T ss_pred CCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCc-----------ccc-ccccEEEE---
Confidence 222211122222 25555566654321 12455665545544321 011 111 11223333
Q ss_pred CCCCEEEEEECC-----CeEEEEEccCCeEEEE
Q 001279 188 SSGNRVLIAYEN-----ALVILWDVSEAQIIFV 215 (1108)
Q Consensus 188 ~~~~~ll~~~~d-----g~V~lWdl~~~~~~~~ 215 (1108)
++..++.|+.+ ..+.+||+.+.+-..+
T Consensus 204 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 235 (302)
T 2xn4_A 204 -NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235 (302)
T ss_dssp -TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred -CCEEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence 45556666554 3678899888765544
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.45 E-value=15 Score=42.13 Aligned_cols=98 Identities=10% Similarity=0.160 Sum_probs=57.0
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecC-Ccc-eEE-eCC------CCCCEEEEEEeeC---CCEEEEEe-C-------
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGD-GIE-GLL-ISP------SQLPYKNLEFLQN---QGFLISIT-N------- 96 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~-~~~-~~~-~~~------h~~~V~~l~fs~d---~~~L~S~s-~------- 96 (1108)
....|+|.|+|+++++-...++|++++.. +.. .+. +.. .......|+|+|+ .+.|..+. .
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 56799999999977664443579998763 322 121 111 2456789999995 45554443 2
Q ss_pred -----CCcEEEEEcCCC-------e-eeeeecC--CCCeeEEEEecCCCEEEE
Q 001279 97 -----DNEIQVWSLESR-------S-LACCLKW--ESNITAFSVISGSHFMYI 134 (1108)
Q Consensus 97 -----d~~I~vWd~~s~-------~-~~~~~~~--~~~Itsl~~~~~~~~l~v 134 (1108)
.+.|.-|++... + ++..+.. ......++|.+++.+.++
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 234666665321 1 1222221 134788999999974443
No 336
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.41 E-value=14 Score=39.50 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=18.3
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCceEE
Q 001279 614 SGAKLAVGFEC-----GRVAVLDMNLLSVL 638 (1108)
Q Consensus 614 dg~~LavGs~d-----G~V~vwd~~~~~~~ 638 (1108)
+++++++|+.+ ..|.+||+.+.+..
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 66788888754 35888999887654
No 337
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.14 E-value=25 Score=37.27 Aligned_cols=109 Identities=8% Similarity=-0.048 Sum_probs=53.4
Q ss_pred CCCEEEEEECC----CcEEEEecCCcceEEeCCCCC-CEEEEEEeeCCCEEEEEeCC------CcEEEEEcCCCeeeee-
Q 001279 46 IQRLLAIATLD----GRIKVIGGDGIEGLLISPSQL-PYKNLEFLQNQGFLISITND------NEIQVWSLESRSLACC- 113 (1108)
Q Consensus 46 ~~~~LA~Gs~d----G~I~iw~~~~~~~~~~~~h~~-~V~~l~fs~d~~~L~S~s~d------~~I~vWd~~s~~~~~~- 113 (1108)
++.+++.|+.+ ..+.+||....+-.....-.. ........-++..++.++.+ +.+.+||..+.+-...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 56677777755 567778876554432222111 11111122355555555544 5699999988754332
Q ss_pred -ecCCCCeeEEEEecCCCEEEEEeCCC-------cEEEEEEecCCCeeee
Q 001279 114 -LKWESNITAFSVISGSHFMYIGDENG-------LMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 114 -~~~~~~Itsl~~~~~~~~l~vg~~dg-------~V~vw~~d~~~~~l~~ 155 (1108)
+.....-.+++. -++.+.+.|+.++ .-.+|.||....+...
T Consensus 135 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~ 183 (306)
T 3ii7_A 135 SMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE 183 (306)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE
T ss_pred CCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE
Confidence 222211122222 3555556665322 1235566655555443
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.97 E-value=53 Score=35.02 Aligned_cols=142 Identities=10% Similarity=0.066 Sum_probs=83.6
Q ss_pred cCCCCEEEEEE--CCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeCC--------------CcEEEEEcCC
Q 001279 44 DHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND--------------NEIQVWSLES 107 (1108)
Q Consensus 44 sp~~~~LA~Gs--~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d--------------~~I~vWd~~s 107 (1108)
++++.+|.... .++.|+..+.++.....+.... +--|++++.+|+-+... +.|+..++..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE----EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 35677777765 3577888888877665555432 23457888888877653 3578888877
Q ss_pred CeeeeeecCCCCeeEEEEecCCCEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecc
Q 001279 108 RSLACCLKWESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1108)
Q Consensus 108 ~~~~~~~~~~~~Itsl~~~~~~~~l~vg~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1108)
.+........ +..+++++++|+-.+ .++.-.|+.++.+.....+ +..+. + ..+.
T Consensus 98 ~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~----lt~~~--------------~--~~~~ 153 (302)
T 3s25_A 98 HGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK----IKNHY--------------L--FTCN 153 (302)
T ss_dssp CCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE----EESSC--------------C--CCSE
T ss_pred CcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE----EeCCC--------------c--eEee
Confidence 7543333222 236677888888776 4555566666654333322 22211 1 2345
Q ss_pred cCCCCCEEEEEEC-CCeEEEEEccCCeEEEE
Q 001279 186 PNSSGNRVLIAYE-NALVILWDVSEAQIIFV 215 (1108)
Q Consensus 186 P~~~~~~ll~~~~-dg~V~lWdl~~~~~~~~ 215 (1108)
| ++..|+-.+. ...|.+-++.++....+
T Consensus 154 ~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 154 T--SDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp E--ETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred E--ECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 5 4555554443 56777777777654333
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=82.68 E-value=8.9 Score=41.87 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=63.7
Q ss_pred cEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEE-ecCceEEEEEecCCCCCccc
Q 001279 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVG-NEFGLVYIYNLNGSLDAKNF 574 (1108)
Q Consensus 496 ~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg-~~dG~V~lw~l~~~~~~~~~ 574 (1108)
.+++.++.||.|.-.|..++.....+.......-+...+.... .++..++.. +.||.+..++......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~-------~~~~~~vv~p~~dG~l~a~~~~~G~~---- 79 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRL-------ETYETLIIEPFGDGNIYYFNAHQGLQ---- 79 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTT-------TSSEEEEECCSTTTEEEEEETTTEEE----
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccc-------cCCcEEEEEECCCCEEEEEECCCCcE----
Confidence 3788899999999999999987755544300000111111110 122333333 4678777776544310
Q ss_pred cccccCccceeecccCCcceEEEEEee----cCcCEEE---EEE-----cCCCCEEEEEeCCCeEEEEEccCceEEEEee
Q 001279 575 LFVLETKSEVHALPEGKISLCRAVFSL----VNSPVRA---LQF-----TSSGAKLAVGFECGRVAVLDMNLLSVLFFTD 642 (1108)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~----h~~~Vts---laf-----spdg~~LavGs~dG~V~vwd~~~~~~~~~~~ 642 (1108)
...+.. ...++.. ..+ +..+..+.+|+.+|++.-+|+.+++++++..
T Consensus 80 ---------------------~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 80 ---------------------KLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp ---------------------EEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ---------------------EeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 000000 1122221 000 0134578899999999999999999998765
Q ss_pred c
Q 001279 643 D 643 (1108)
Q Consensus 643 ~ 643 (1108)
.
T Consensus 139 ~ 139 (339)
T 2be1_A 139 P 139 (339)
T ss_dssp T
T ss_pred c
Confidence 3
No 340
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=81.28 E-value=17 Score=38.91 Aligned_cols=25 Identities=8% Similarity=-0.044 Sum_probs=18.8
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCceEE
Q 001279 614 SGAKLAVGFECG-----RVAVLDMNLLSVL 638 (1108)
Q Consensus 614 dg~~LavGs~dG-----~V~vwd~~~~~~~ 638 (1108)
+++++++|+.++ .+.+||+.+.+..
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 677888887655 5888898887655
No 341
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=81.26 E-value=42 Score=36.77 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=40.0
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe-eeeee----cCCCCeeEEEEecC---CCEEEEEeC
Q 001279 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCL----KWESNITAFSVISG---SHFMYIGDE 137 (1108)
Q Consensus 77 ~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~-~~~~~----~~~~~Itsl~~~~~---~~~l~vg~~ 137 (1108)
..-..|+|.|++. |+.+..++.|.++|- .++ .+..+ ........++++|+ +.+|++...
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 3467899999976 555566799999974 443 22221 12346889999998 677777664
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=80.16 E-value=28 Score=38.19 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=39.4
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCe--eeeee-----cCCCCeeEEEEecC---CCEEEEEeC
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCL-----KWESNITAFSVISG---SHFMYIGDE 137 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~--~~~~~-----~~~~~Itsl~~~~~---~~~l~vg~~ 137 (1108)
.-..|+|.|+|.+|+.+...+.|.+++..... .+..+ ........++++|+ +.+|++...
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 35789999998735555668999999854321 11111 12345789999997 677777643
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=77.77 E-value=3 Score=42.29 Aligned_cols=116 Identities=13% Similarity=-0.051 Sum_probs=60.9
Q ss_pred CCCccccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecCceEEEEE
Q 001279 485 PVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1108)
Q Consensus 485 ~~~~~~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~dG~V~lw~ 564 (1108)
.+..++++|++.+++. .+|.++--+..+......+.....+... +-.. -.++.|.++|.+.++ .||.|. .
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~---Gw~~-F~a~~fD~~G~LYav--~dG~iy--r 111 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG---GWNQ-FQFLFFDPNGYLYAV--SKDKLY--K 111 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS---CGGG-CSEEEECTTSCEEEE--ETTEEE--E
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc---cccc-ceEEEECCCCCEEEe--CCCEEE--E
Confidence 4456699999999988 6775544444332211000000000000 1111 378999999999888 568655 4
Q ss_pred ecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEE
Q 001279 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1108)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~dG~V~ 628 (1108)
+.....+ ....+... ...-..-=..++.|.|.|+|.+-|+. ||.++
T Consensus 112 ~~pP~~~-~~~Wl~~a---------------~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 112 ASPPQSD-TDNWIARA---------------TEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp ESCCCST-TCCHHHHS---------------EEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred eCCCcCC-CCceeccc---------------cEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 4332111 00000000 01001111467999999999988888 77643
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=75.29 E-value=31 Score=36.91 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=35.5
Q ss_pred CCcEEEEEecC-------CcEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC------ceE
Q 001279 494 VDRVYLAGYHD-------GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF------GLV 560 (1108)
Q Consensus 494 ~~~llatgs~D-------GtVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d------G~V 560 (1108)
++.+++.|+.+ ..+.++|..+..-..+..+... ..+| . ++ ..++.+++.|+.+ ..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~----~-~~-~~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-----VYGH----N-VI-SHNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-----EESC----E-EE-EETTEEEEECCEESSSCBCCCE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-----cccc----E-EE-EECCEEEEEcCCCCCCCccceE
Confidence 56688888764 2377888877765533222111 1222 1 11 2477777777752 346
Q ss_pred EEEEecCC
Q 001279 561 YIYNLNGS 568 (1108)
Q Consensus 561 ~lw~l~~~ 568 (1108)
.+|++...
T Consensus 178 ~~yd~~~~ 185 (318)
T 2woz_A 178 FIYNPKKG 185 (318)
T ss_dssp EEEETTTT
T ss_pred EEEcCCCC
Confidence 77776554
No 345
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=75.08 E-value=31 Score=36.74 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=56.8
Q ss_pred CCcEEEEEecCC-----cEEEEeCCCCceeeEeeeccccceeeccCCCCCeEEEEEEeCCCeEEEEecC-----ceEEEE
Q 001279 494 VDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF-----GLVYIY 563 (1108)
Q Consensus 494 ~~~llatgs~DG-----tVriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs~d~~~Lasg~~d-----G~V~lw 563 (1108)
++.+++.|+.++ .+.+||..+.....+..+. .....-.++.+ ++.+++.|+.+ ..+.+|
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~y 189 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML---------TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECY 189 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS---------SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC---------ccccceEEEEE--CCEEEEEeCCCCCCcCceEEEE
Confidence 566888886543 4788888776654322111 11111122222 67778888765 346666
Q ss_pred EecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCceEE
Q 001279 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC-----GRVAVLDMNLLSVL 638 (1108)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~LavGs~d-----G~V~vwd~~~~~~~ 638 (1108)
++....= ..+.. .......-.++.+ +++++++|+.+ ..|.+||+.+.+..
T Consensus 190 d~~~~~W--------------~~~~~---------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 190 YPERNEW--------------RMITA---------MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ETTTTEE--------------EECCC---------CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eCCCCeE--------------eeCCC---------CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 6654310 00000 0000011112222 67788888765 45899999887655
No 346
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=75.08 E-value=70 Score=33.83 Aligned_cols=150 Identities=9% Similarity=0.007 Sum_probs=70.6
Q ss_pred CCCCEEEEEECC----CcEEEEecCCcceEEeCCCCCC--EEEEEEeeCCCEEEEEeC---------CCcEEEEEcCCCe
Q 001279 45 HIQRLLAIATLD----GRIKVIGGDGIEGLLISPSQLP--YKNLEFLQNQGFLISITN---------DNEIQVWSLESRS 109 (1108)
Q Consensus 45 p~~~~LA~Gs~d----G~I~iw~~~~~~~~~~~~h~~~--V~~l~fs~d~~~L~S~s~---------d~~I~vWd~~s~~ 109 (1108)
-++.+++.|+.+ ..+.+||....+-..+..-..+ -..++. .++..++.++. -+.+.++|..+.+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 346677777632 4678888866554433221111 112222 24444444443 2568999998875
Q ss_pred eeee--ecCCCCeeEEEEecCCCEEEEEeCCCc---EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 110 LACC--LKWESNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 110 ~~~~--~~~~~~Itsl~~~~~~~~l~vg~~dg~---V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
-... +.....-.+++. -++..++.|+.++. -.+|.|+....+....+ .++ ... ..-.++.+
T Consensus 102 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p-----------~~r-~~~~~~~~ 167 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PML-----------TRR-IGVGVAVL 167 (308)
T ss_dssp EEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCS-----------SCC-BSCEEEEE
T ss_pred EeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCC-----------ccc-cceEEEEE
Confidence 3322 221111112222 25566666654332 12455665545444321 111 111 11222333
Q ss_pred ccCCCCCEEEEEECC-----CeEEEEEccCCeEE
Q 001279 185 HPNSSGNRVLIAYEN-----ALVILWDVSEAQII 213 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~d-----g~V~lWdl~~~~~~ 213 (1108)
++..++.|+.+ ..+.+||+.+.+-.
T Consensus 168 ----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 197 (308)
T 1zgk_A 168 ----NRLLYAVGGFDGTNRLNSAECYYPERNEWR 197 (308)
T ss_dssp ----TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred ----CCEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence 45555555543 35778888877644
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=73.81 E-value=54 Score=35.73 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=41.0
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee--eee-----cCCCCeeEEEEecC---CCEEEEE
Q 001279 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA--CCL-----KWESNITAFSVISG---SHFMYIG 135 (1108)
Q Consensus 77 ~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~--~~~-----~~~~~Itsl~~~~~---~~~l~vg 135 (1108)
..-..|+|.|||..+++--..+.|.+++...++.. ..+ ........++++|+ +.+|++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 34678999999876666655899999987665432 211 12356889999996 5667664
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=70.89 E-value=13 Score=40.45 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeecCC--CCeeEEEEe--cCCCEEEEE--eCCCcEEEEEEecCCCeeeeeceeecc
Q 001279 89 GFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVI--SGSHFMYIG--DENGLMSVIKYDADEGKLFQLPYNISA 162 (1108)
Q Consensus 89 ~~L~S~s~d~~I~vWd~~s~~~~~~~~~~--~~Itsl~~~--~~~~~l~vg--~~dg~V~vw~~d~~~~~l~~~~~~i~~ 162 (1108)
..++.++.||.|.-.|..+|+.+..+... .++....-. +.+..++++ ..||.++.+ +..+|. .+.++.++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~--~~~~G~-~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYF--NAHQGL-QKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEE--ETTTEE-EEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEE--ECCCCc-EEeeecccc
Confidence 57888999999999999999999888554 222221100 112345544 579966554 444453 333344432
Q ss_pred cccccccCCCCCCCCCeEEEecccCC-------CCCEEEEEECCCeEEEEEccCCeEEEEeCC
Q 001279 163 DALSEKAGFPLLSHQPVVGVLPHPNS-------SGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1108)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~~v~f~P~~-------~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~ 218 (1108)
.. . ..++.. .-.|-- .+..+++++.+|.+.-.|+.+|+.++.+..
T Consensus 88 lv--~--------~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 88 LV--S--------TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HH--T--------TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ce--e--------cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 11 0 011221 111211 334589999999999999999999887653
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.55 E-value=38 Score=42.78 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=32.8
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~ 114 (1108)
.+.++...++..+|++.|.|+++|+||+.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5677777888899999999999999999999988765
No 350
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.46 E-value=1.2e+02 Score=32.45 Aligned_cols=202 Identities=8% Similarity=0.016 Sum_probs=113.3
Q ss_pred CCCCEEEEEECCCcEEEEecCCcc--------eE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcC---CC----
Q 001279 45 HIQRLLAIATLDGRIKVIGGDGIE--------GL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE---SR---- 108 (1108)
Q Consensus 45 p~~~~LA~Gs~dG~I~iw~~~~~~--------~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~---s~---- 108 (1108)
|+..++++.+.+|.|+--.+.... .. ........+..+........++..+..|.+.-.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456789999999999988653221 11 111233456666666666788889999986665542 21
Q ss_pred --eee---eeecCCCCeeEEEEec---CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 109 --SLA---CCLKWESNITAFSVIS---GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 109 --~~~---~~~~~~~~Itsl~~~~---~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
..+ -.+.....|.++.... ...+++..+.+|.++...++.-... .............+.+.
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-----------r~~G~~~i~L~~~d~lv 154 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-----------KSRGVIVIKLNDKDFVT 154 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC---------------CEECBCCCTTCCEE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-----------CCCcEEEEecCCCCEEE
Confidence 111 1123334566665443 4678899999998877665431100 00000001111235676
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
.+.... ....+++.+.+|.+..++++.-+..-. ...+.......+...|.++... .
T Consensus 155 ~~~~~~--~~~~i~l~T~~G~~~r~~~~ev~~~gR---------------------~~~Gv~~i~L~~~d~vv~~~~v-~ 210 (312)
T 1suu_A 155 SAEIVF--KDEKVICLSKKGSAFIFNSRDVRLTNR---------------------GTQGVCGMKLKEGDLFVKVLSV-K 210 (312)
T ss_dssp EEEEEC--TTCEEEEEETTSEEEEEEGGGSCBCCT---------------------TBCCEECCCCCTTCCEEEEEEC-T
T ss_pred EEEEeC--CCCEEEEEeCCCcEEEEEHHHccccCC---------------------CCCCeEeEEeCCCCEEEEEEEE-C
Confidence 666532 345699999999988888765221100 0000000111124456666645 5
Q ss_pred CCCEEEEEEccCcEEEEecCC
Q 001279 261 SGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~ 281 (1108)
++..|++.+..|..+..++..
T Consensus 211 ~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 211 ENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCSEEEEEETTSEEEEEEGGG
T ss_pred CCCeEEEEECCCceEEEEHHH
Confidence 567788999999988887754
No 351
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.40 E-value=1.1e+02 Score=31.89 Aligned_cols=161 Identities=11% Similarity=0.116 Sum_probs=93.5
Q ss_pred CCceEEEEcC-CCCEEEEEECCCcEEEEecCCcc-----eE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCC-
Q 001279 36 ATASILAFDH-IQRLLAIATLDGRIKVIGGDGIE-----GL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES- 107 (1108)
Q Consensus 36 ~~is~la~sp-~~~~LA~Gs~dG~I~iw~~~~~~-----~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s- 107 (1108)
..|..+.... +..++++.|.+|.|+...+.... .. ........+..+....+...|+..+..|.+...+...
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ei 147 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREV 147 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhC
Confidence 3454443322 56799999999999999874321 11 1122334566666665667899999999987777532
Q ss_pred --------CeeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 108 --------RSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 108 --------~~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
|...-.+.....|.++....+..++++.++.|.++...++. |......-...... ...+.+
T Consensus 148 p~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e---------~~~~~R~gkGv~~i--~~~~~l 216 (276)
T 3no0_A 148 PPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE---------IPKTNRGVKGTEVS--GTKDTL 216 (276)
T ss_dssp CBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG---------SCCCCTTCCCEECC--CSSSCE
T ss_pred CCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH---------cccCCCCCcceEEE--cCCCcE
Confidence 11112233446777777767777899999999887777653 11111000000001 112445
Q ss_pred EEEecccCCCCCEEEEEECCCeEEE--EEccC
Q 001279 180 VGVLPHPNSSGNRVLIAYENALVIL--WDVSE 209 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~l--Wdl~~ 209 (1108)
..+..-. ....+++.+.+|.+.. ++++.
T Consensus 217 v~~~~~~--~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 217 VDLIPIK--EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEES--SEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEEeC--CCCEEEEEcCCCeEEEeeeCHHH
Confidence 5544321 2334788888887777 77654
No 352
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=69.02 E-value=1.2e+02 Score=32.02 Aligned_cols=110 Identities=8% Similarity=0.127 Sum_probs=51.2
Q ss_pred cCCCCEEEEEEC----CC-------cEEEEecCCcceEEeCCCCCC--EEEEEEeeCCCEEEEEeCC-------CcEEEE
Q 001279 44 DHIQRLLAIATL----DG-------RIKVIGGDGIEGLLISPSQLP--YKNLEFLQNQGFLISITND-------NEIQVW 103 (1108)
Q Consensus 44 sp~~~~LA~Gs~----dG-------~I~iw~~~~~~~~~~~~h~~~--V~~l~fs~d~~~L~S~s~d-------~~I~vW 103 (1108)
..++.+++.|+. ++ .+.+||....+-.....-..+ -.+++.. ++...+.++.+ +.+.++
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEE
Confidence 456777777773 12 166677655544333221111 1122222 44555555543 358889
Q ss_pred EcCCCeeeeeecCCCCe--eEEEEecCCCEEEEEeCC-C---cEEEEEEecCCCeeee
Q 001279 104 SLESRSLACCLKWESNI--TAFSVISGSHFMYIGDEN-G---LMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 104 d~~s~~~~~~~~~~~~I--tsl~~~~~~~~l~vg~~d-g---~V~vw~~d~~~~~l~~ 155 (1108)
|..+.+-...-..+... .+++. .++.+.+.|+.+ + .-.+|.||....+...
T Consensus 133 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 189 (318)
T 2woz_A 133 DPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD 189 (318)
T ss_dssp ETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred eCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence 98877543322222111 12222 455665666531 1 1125666665555443
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=67.35 E-value=18 Score=41.81 Aligned_cols=104 Identities=11% Similarity=0.063 Sum_probs=69.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEE-CCCcEEEEecCCcce-------------EEeCCCCCCEEEEEEeeCCCEEEEEeCCC
Q 001279 33 GIPATASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEG-------------LLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1108)
Q Consensus 33 G~~~~is~la~sp~~~~LA~Gs-~dG~I~iw~~~~~~~-------------~~~~~h~~~V~~l~fs~d~~~L~S~s~d~ 98 (1108)
.+|..+..+.++|||+++++++ .+.++.+++...... ....+-...-...+|.++|....|.--|.
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecc
Confidence 6778888899999999877754 568999999864322 12223344678899999984444445799
Q ss_pred cEEEEEcCCC----------eeeeeecCCCCeeEEEE------ecCCCEEEEEe
Q 001279 99 EIQVWSLESR----------SLACCLKWESNITAFSV------ISGSHFMYIGD 136 (1108)
Q Consensus 99 ~I~vWd~~s~----------~~~~~~~~~~~Itsl~~------~~~~~~l~vg~ 136 (1108)
.|.-||+... .++..+.-.-.+-.+.. .++++||++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999999764 34444433333333333 35667766653
No 354
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=65.09 E-value=43 Score=36.55 Aligned_cols=71 Identities=14% Similarity=0.014 Sum_probs=45.7
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcce--EEe-----CCCCCCEEEEEEeeC---CCEE-EEEe--CCCcEEEE
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LLI-----SPSQLPYKNLEFLQN---QGFL-ISIT--NDNEIQVW 103 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~--~~~-----~~h~~~V~~l~fs~d---~~~L-~S~s--~d~~I~vW 103 (1108)
....|+|.|+++++++-...|+|++++.+.... +.. .........|+|+|+ .++| ++.+ .++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 467899999999776654489999998643222 211 123557899999985 3444 4333 35556666
Q ss_pred EcCC
Q 001279 104 SLES 107 (1108)
Q Consensus 104 d~~s 107 (1108)
.+..
T Consensus 113 ~~~~ 116 (347)
T 3das_A 113 LYDE 116 (347)
T ss_dssp EBCT
T ss_pred EeCC
Confidence 6654
No 355
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=63.62 E-value=37 Score=36.94 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=11.2
Q ss_pred CcEEEEeCCCCceeeE
Q 001279 505 GSVRIWDATYPVFKLI 520 (1108)
Q Consensus 505 GtVriWd~~~~~l~~~ 520 (1108)
..+.+||..+..-..+
T Consensus 168 ~~v~~yd~~~~~W~~~ 183 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYA 183 (357)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred ccEEEEeCCCCcEEEC
Confidence 4688889887765533
No 356
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=62.98 E-value=1.6e+02 Score=31.21 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=65.9
Q ss_pred EEEcCCCCEEEEEE----CCCcEEEEecCCcceEEeCCCCCCEEEEEEeeCCCEEEEEeC-CCcEEEEEcCCCeeeeeec
Q 001279 41 LAFDHIQRLLAIAT----LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLK 115 (1108)
Q Consensus 41 la~sp~~~~LA~Gs----~dG~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWd~~s~~~~~~~~ 115 (1108)
.++++++..|+-.. .+..|+..++++.....+..+.. ..|+++++.|+-.+. ...|.+-++..+.......
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 47888999999886 34566667777766555544433 457888888887765 5778888887765433332
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001279 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1108)
Q Consensus 116 ~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~ 149 (1108)
+.. ...+.|++.+|+-....+.-+|+..+.+
T Consensus 185 --~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 185 --CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp --SCE-EEEEEEETTEEEEEEGGGTTEEEEECSS
T ss_pred --CCc-cceeeecCCEEEEEEcCCCcEEEEEECC
Confidence 222 2346688888887665432345555543
No 357
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=62.90 E-value=1.6e+02 Score=31.08 Aligned_cols=155 Identities=10% Similarity=0.054 Sum_probs=74.2
Q ss_pred EEcCCCCEEEEEEC-----C------CcEEEEecCCcceEEeCCCCCCEE--EEEEeeCCCEEEEEeCC--------CcE
Q 001279 42 AFDHIQRLLAIATL-----D------GRIKVIGGDGIEGLLISPSQLPYK--NLEFLQNQGFLISITND--------NEI 100 (1108)
Q Consensus 42 a~sp~~~~LA~Gs~-----d------G~I~iw~~~~~~~~~~~~h~~~V~--~l~fs~d~~~L~S~s~d--------~~I 100 (1108)
+...++++++.|+. . ..+.+||....+-.....-..+-. .++.. ++..++.++.+ +.+
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCE
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceE
Confidence 33457888888884 1 126777876655443322111111 12222 44444444421 459
Q ss_pred EEEEcCCCeeeee--ecCCCCeeEEEEecCCCEEEEEeC-CC---cEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001279 101 QVWSLESRSLACC--LKWESNITAFSVISGSHFMYIGDE-NG---LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1108)
Q Consensus 101 ~vWd~~s~~~~~~--~~~~~~Itsl~~~~~~~~l~vg~~-dg---~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1108)
.++|..+.+-... +.....-.+++. .+++.++.|+. ++ .-.+|.|+....+....+ .++ ..
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p-----------~~ 186 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQ-----------TA 186 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCS-----------SC
T ss_pred EEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCC-----------Cc
Confidence 9999988753322 222211122222 35566666654 21 113455665545544321 111 11
Q ss_pred CCCCeEEEecccCCCCCEEEEEECCC-----eEEEEEccCCeEEEE
Q 001279 175 SHQPVVGVLPHPNSSGNRVLIAYENA-----LVILWDVSEAQIIFV 215 (1108)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg-----~V~lWdl~~~~~~~~ 215 (1108)
. ..-.++.. ++..++.|+.++ .+.+||+.+.+-...
T Consensus 187 r-~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 187 R-SLFGATVH----DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp C-BSCEEEEE----TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred h-hceEEEEE----CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 1 11223333 455566666544 577888888765443
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=61.90 E-value=1.3e+02 Score=32.99 Aligned_cols=156 Identities=14% Similarity=0.025 Sum_probs=74.9
Q ss_pred CCCceEEEEcC--CCCEEEEEECCC----cEEEEecCCc--ceEEeC---C---------CCCCEEEEEEee-C-CCEEE
Q 001279 35 PATASILAFDH--IQRLLAIATLDG----RIKVIGGDGI--EGLLIS---P---------SQLPYKNLEFLQ-N-QGFLI 92 (1108)
Q Consensus 35 ~~~is~la~sp--~~~~LA~Gs~dG----~I~iw~~~~~--~~~~~~---~---------h~~~V~~l~fs~-d-~~~L~ 92 (1108)
...|.+|+++| .+.+.|.+ ..| .|....-.+. +.+... + +...|.+|++.| + ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35689999999 55555544 444 4544432222 111110 1 112477889986 2 45566
Q ss_pred EEeCCCcEEEEEcCCC--eeeeee-----------------cCCCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCe
Q 001279 93 SITNDNEIQVWSLESR--SLACCL-----------------KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGK 152 (1108)
Q Consensus 93 S~s~d~~I~vWd~~s~--~~~~~~-----------------~~~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~ 152 (1108)
.++..+-|...+-... +.+... .....|.++.++|. ...+++|...+. |+..+....+
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~gg--l~~s~DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGG--VFESTDAGTD 210 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBE--EEEESSTTSS
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCC--EEEECCCCCC
Confidence 6665555444432111 122111 01235789999884 456677765553 3444332223
Q ss_pred eeeeceeecccccccccCCCCCC---CCCeEEEecccCCCCCEEEEEECCC
Q 001279 153 LFQLPYNISADALSEKAGFPLLS---HQPVVGVLPHPNSSGNRVLIAYENA 200 (1108)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~---~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1108)
.......... ...+... ...+.+|.++|. +...|+++...+
T Consensus 211 W~~~~~~~~~------~~~p~~~~~~g~~~~~i~~~~~-~~~~l~vg~~~g 254 (394)
T 3b7f_A 211 WKPLNRGCAA------NFLPDPNVEFGHDPHCVVQHPA-APDILYQQNHCG 254 (394)
T ss_dssp CEECCTTCCC------TTSSSSSSSSCBCEEEEEECSS-STTEEEEEETTE
T ss_pred ceECCCCccc------cccCCCccccCcceeEEEECCC-CCCEEEEEcCCe
Confidence 3221000000 0001000 134889999885 334577776555
No 359
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=61.86 E-value=1.6e+02 Score=38.40 Aligned_cols=123 Identities=11% Similarity=0.142 Sum_probs=71.7
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeeEeeeccccceeeccCC--CCCeEEEEEEeCCCeEEEEecCceEEEEEecC
Q 001279 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGS--RAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1108)
Q Consensus 490 ~~s~~~~llatgs~DGtVriWd~~~~~l~~~~~l~~~~~~~~l~~h--~~~Vt~lafs~d~~~Lasg~~dG~V~lw~l~~ 567 (1108)
-++|..+++|--. ..++.|+|+.+... ++.| ..+|.--.|-.+.. |+..+ +..|.-|++..
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~k--------------lks~~~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSK--------------MKAHTMTDDVTFWKWISLNT-VALVT-DNAVYHWSMEG 134 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhh--------------hcccccCCCceEEEecCCCe-eEEEc-CCeEEEeccCC
Confidence 3567777777654 67899999876552 2222 22565556654443 33332 34789999865
Q ss_pred CCCCccccccccCccceeecccCCcceEEEEEeec----CcCEEEEEEcCCCCEEEEEe-------CCCeEEEEEccCce
Q 001279 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV----NSPVRALQFTSSGAKLAVGF-------ECGRVAVLDMNLLS 636 (1108)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h----~~~Vtslafspdg~~LavGs-------~dG~V~vwd~~~~~ 636 (1108)
.+. +...|..| ...|..-..+++.++++..+ -.|.+.+|.++.+.
T Consensus 135 ~s~------------------------P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~ 190 (1630)
T 1xi4_A 135 ESQ------------------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (1630)
T ss_pred CCc------------------------cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence 321 22222333 56788888899988877432 34667777766543
Q ss_pred EEEEeecCCCCCCceEEEEee
Q 001279 637 VLFFTDDISGSSSPIISMTWT 657 (1108)
Q Consensus 637 ~~~~~~~~~~h~~~V~~l~fs 657 (1108)
. +.+.||...-..+...
T Consensus 191 s----Q~iegha~~F~~~~~~ 207 (1630)
T 1xi4_A 191 S----QPIEGHAASFAQFKME 207 (1630)
T ss_pred c----hhhhHhHhhhheeccC
Confidence 2 2556776654444433
No 360
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=60.48 E-value=11 Score=32.56 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHH---Hhhcccccc
Q 001279 1055 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVK---TMENRKWWK 1107 (1108)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~---~~~~~~~~~ 1107 (1108)
-..+...++-+.++.+|+=+=-+|-++|.+.+++.+..|....+ +++.+-||+
T Consensus 36 q~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwk 91 (96)
T 1sfc_A 36 QAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999999998865 667778996
No 361
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=59.93 E-value=1.1e+02 Score=31.66 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=82.3
Q ss_pred CEEEEEECCCcEEEEecCCcc--eEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEE---EEcCC----Ceeee-e--ec
Q 001279 48 RLLAIATLDGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQV---WSLES----RSLAC-C--LK 115 (1108)
Q Consensus 48 ~~LA~Gs~dG~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v---Wd~~s----~~~~~-~--~~ 115 (1108)
..+++-+.+|.|+--...... .+.. .....+..+........|+..+..|.+.- +++.. |..+. . +.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~l-ke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNY-KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCC-CTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccC-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 456778899999877654322 1112 23345656655555567777888887544 44522 22221 1 23
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEE
Q 001279 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1108)
Q Consensus 116 ~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1108)
....|.++....+..+++..+..|.++...++.- ... .............+.+..+..-+ +....+++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~---------~~~--~r~G~~~i~L~~~d~lv~~~~~~-~~~~~i~l 149 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL---------VAR--NRAGKALITLPENAHVMPPVVIE-DASDMLLA 149 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG---------CCC--STTCEECBCCCTTCCBCCCEECC-CTTCEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh---------ccc--CcCceEEEEECCCCEEEEEEEec-CCCCEEEE
Confidence 3456777755445678889999998887776431 000 00000000111123454444321 13446999
Q ss_pred EECCCeEEEEEccC
Q 001279 196 AYENALVILWDVSE 209 (1108)
Q Consensus 196 ~~~dg~V~lWdl~~ 209 (1108)
.+.+|.+..++++.
T Consensus 150 ~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 150 ITQAGRMLMFPVSD 163 (256)
T ss_dssp EETTSEEEEEEGGG
T ss_pred EcCCCeEEEEEHHH
Confidence 99999988888765
No 362
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=59.26 E-value=2.1e+02 Score=34.45 Aligned_cols=111 Identities=7% Similarity=0.062 Sum_probs=58.1
Q ss_pred CCCCEEEEEECC----CcEEEEecCCcceEEeC-C-------CCCCEEEEEEee-CCCEEEEEeCC------CcEEEEEc
Q 001279 45 HIQRLLAIATLD----GRIKVIGGDGIEGLLIS-P-------SQLPYKNLEFLQ-NQGFLISITND------NEIQVWSL 105 (1108)
Q Consensus 45 p~~~~LA~Gs~d----G~I~iw~~~~~~~~~~~-~-------h~~~V~~l~fs~-d~~~L~S~s~d------~~I~vWd~ 105 (1108)
.++.+++.|+.+ ..+.+||....+..... + ..-.-.+++... ++..++.++.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567788888754 45777887655443322 1 111112333333 55555555532 45889999
Q ss_pred CCCeeee--eecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001279 106 ESRSLAC--CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1108)
Q Consensus 106 ~s~~~~~--~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~ 155 (1108)
.+.+-.. .+.....-.+.+...++..++.|+.++.-.+|.||....+...
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE
Confidence 8864332 2222222223333347777777775542245666665555543
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=57.15 E-value=2.2e+02 Score=31.06 Aligned_cols=145 Identities=10% Similarity=0.011 Sum_probs=71.7
Q ss_pred CceEEEEcCC--CCEEEEEECCCcEEEEecCCcceEEeC-------------------CCCCCEEEEEEee-CCCEEEEE
Q 001279 37 TASILAFDHI--QRLLAIATLDGRIKVIGGDGIEGLLIS-------------------PSQLPYKNLEFLQ-NQGFLISI 94 (1108)
Q Consensus 37 ~is~la~sp~--~~~LA~Gs~dG~I~iw~~~~~~~~~~~-------------------~h~~~V~~l~fs~-d~~~L~S~ 94 (1108)
.|.+++++|. ...|.+|+..+.|...+-.+..-.... .....|.+|.+.| +...|..+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 4778999972 455555655666666543332221111 1223588999987 33445545
Q ss_pred eCCCcEEEEEcCCCeeeeeec------C--------CCCeeEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeecee
Q 001279 95 TNDNEIQVWSLESRSLACCLK------W--------ESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYN 159 (1108)
Q Consensus 95 s~d~~I~vWd~~s~~~~~~~~------~--------~~~Itsl~~~~~-~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~ 159 (1108)
+.++-|...+- .++--..+. + ...+.++.+++. ...|+++...| |+..+....+.......
T Consensus 196 ~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g---l~~s~D~G~tW~~~~~~ 271 (394)
T 3b7f_A 196 MSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG---IYRMDRREGVWKRIGDA 271 (394)
T ss_dssp EETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE---EEEEETTTTEEECGGGG
T ss_pred ECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe---EEEeCCCCCcceECCCC
Confidence 44443333221 111111110 0 124889999986 46788887655 44444333333321000
Q ss_pred ecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEE
Q 001279 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1108)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~ 197 (1108)
++. .....+.++.++|...+. |+++.
T Consensus 272 l~~-----------~~~~~~~~i~~~p~~~~~-l~~~t 297 (394)
T 3b7f_A 272 MPR-----------EVGDIGFPIVVHQRDPRT-VWVFP 297 (394)
T ss_dssp SCT-----------TTCSCEEEEEECSSCTTC-EEEEE
T ss_pred CCC-----------CCccceEEEEECCCCCCE-EEEEe
Confidence 110 001235678888765555 55554
No 364
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=56.90 E-value=60 Score=37.66 Aligned_cols=84 Identities=7% Similarity=-0.115 Sum_probs=52.3
Q ss_pred eEEEEEEeCCCeEEEEec-CceEEEEEecCCCCCccccccccCccceeecccCCcceEEEEEeecCcCEEEEEEcCCCCE
Q 001279 539 VSTLSFCFINSSLAVGNE-FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1108)
Q Consensus 539 Vt~lafs~d~~~Lasg~~-dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vtslafspdg~~ 617 (1108)
...+.++|||+++++++. +.+|.|+++..-......... ..+ .++..-....-.-...+|.++|..
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~--~~~-----------~~~~ae~e~GlGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA--DPR-----------DVIVGEPELGLGPLHTTFDGRGNA 391 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS--CGG-----------GGEEECCBCCSCEEEEEECSSSEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc--Ccc-----------cceEeeccCCCcccEEEECCCCce
Confidence 345789999999887765 899999999863110000000 000 011111112334566889999966
Q ss_pred EEEEeCCCeEEEEEccCc
Q 001279 618 LAVGFECGRVAVLDMNLL 635 (1108)
Q Consensus 618 LavGs~dG~V~vwd~~~~ 635 (1108)
..+-.-|..|.-|++...
T Consensus 392 YTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEETTTTEEEEEEHHHH
T ss_pred EeeeeecceEEEEeccHH
Confidence 667779999999999764
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.52 E-value=3.8e+02 Score=33.54 Aligned_cols=135 Identities=12% Similarity=0.129 Sum_probs=72.8
Q ss_pred EEEEEe--e--CCCEEEEEeCCCcEEEEEcCCCee-----------eeee---cCCCCeeEEEEecCCCEEEEEeCCCcE
Q 001279 80 KNLEFL--Q--NQGFLISITNDNEIQVWSLESRSL-----------ACCL---KWESNITAFSVISGSHFMYIGDENGLM 141 (1108)
Q Consensus 80 ~~l~fs--~--d~~~L~S~s~d~~I~vWd~~s~~~-----------~~~~---~~~~~Itsl~~~~~~~~l~vg~~dg~V 141 (1108)
.+++|. + +.-.+...+..|.+.-..+...-. .+.. ......-..-..-+...++++..||.+
T Consensus 114 ~~v~f~d~~~~~~L~v~vit~~~~Ly~l~l~~~~f~~~~~~~~~~W~~~~~p~~f~~r~p~~l~av~~~~l~Vsl~dGgL 193 (950)
T 4gq2_M 114 DGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQLPDARLDDDWCLCYRPISFLNQKPDLMAAISTSEICVSFFNGGL 193 (950)
T ss_dssp EEEEEEEETGGGEEEEEEEETTCCEEEEEECTHHHHSTTCCCCTTSEEEECCGGGTTSCEEEEEECSSSEEEEEETTSCE
T ss_pred CceEEeccCCCCeEEEEEEcCCCCEEEEEECHHHccCccccccccccccccCcCccCCCceEEEEEcCCeEEEEECCCCE
Confidence 456774 2 334567778888877766643210 0111 111111122222346678888888877
Q ss_pred EEEEEecCCCeeeeeceeecccccc-cc------cCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEE
Q 001279 142 SVIKYDADEGKLFQLPYNISADALS-EK------AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF 214 (1108)
Q Consensus 142 ~vw~~d~~~~~l~~~~~~i~~~~~~-~~------~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~ 214 (1108)
--.+.+..++......|.-.+.... +. ..........+.+++..+ +...+++-+.|+.+|+||+.+++++.
T Consensus 194 lrl~r~~~~~~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 194 TKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFLS--TYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp EEEEEETTTTEEEEEEECCCCCCCBCC-------CCSSCCCTTCEEEEEEET--TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred EEEEecCCCCCcceeeecCCcHHHhhhhhcccccCCCCCCCcceEEEEeecC--CCcEEEEEECCCEEEEEECCCCCeEe
Confidence 5555555444433221211111000 00 001112234677777755 56779999999999999999998876
Q ss_pred Ee
Q 001279 215 VG 216 (1108)
Q Consensus 215 ~~ 216 (1108)
..
T Consensus 272 t~ 273 (950)
T 4gq2_M 272 TI 273 (950)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 366
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=52.84 E-value=1.9e+02 Score=34.79 Aligned_cols=92 Identities=10% Similarity=0.004 Sum_probs=45.7
Q ss_pred CCCEEEEEECCC------cEEEEecCCcceEEeCCCCCC-E-EEEEEeeCCCEEEEEeCCC--cEEEEEcCCCeeeeee-
Q 001279 46 IQRLLAIATLDG------RIKVIGGDGIEGLLISPSQLP-Y-KNLEFLQNQGFLISITNDN--EIQVWSLESRSLACCL- 114 (1108)
Q Consensus 46 ~~~~LA~Gs~dG------~I~iw~~~~~~~~~~~~h~~~-V-~~l~fs~d~~~L~S~s~d~--~I~vWd~~s~~~~~~~- 114 (1108)
++++++.|+.++ .+.+||.....-.....-..+ . .+++...++..++.++.++ .+.+||..+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 556666665432 355666654433322221111 1 1222223666666666543 7999999887533221
Q ss_pred ----c-CCCCeeEEEEecC-CCEEEEEeC
Q 001279 115 ----K-WESNITAFSVISG-SHFMYIGDE 137 (1108)
Q Consensus 115 ----~-~~~~Itsl~~~~~-~~~l~vg~~ 137 (1108)
. ....-.++.+... +..++.|+.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~ 559 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGG 559 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCB
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCc
Confidence 1 1122334555655 556666654
No 367
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=50.24 E-value=2.7e+02 Score=29.99 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=54.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEE
Q 001279 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI 685 (1108)
Q Consensus 606 Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L 685 (1108)
--+|.+|+....+.+=+.-|.|.+||++++.++|.-+. ...+|..-+..... +. +
T Consensus 262 PVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI---S~d~iF~ta~~~~~---------------------~G-i 316 (365)
T 2xzh_A 262 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEAT---------------------AG-I 316 (365)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEEGGG---------------------TE-E
T ss_pred eEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc---CCCceEEecccCCC---------------------Cc-E
Confidence 45788899888999999999999999999999998776 56666544433211 22 5
Q ss_pred EEEcCCccEEEEeCCCccee
Q 001279 686 IVLFKDAKISIVGGSSENMI 705 (1108)
Q Consensus 686 ~s~s~Dg~v~v~d~~~g~~l 705 (1108)
+...+.|.|.-...+.-.++
T Consensus 317 ~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 317 IGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEEETTCEEEEEEECTTTHH
T ss_pred EEEcCCCEEEEEEECcccEe
Confidence 55568888877766655544
No 368
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=47.26 E-value=2.9e+02 Score=29.45 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=14.9
Q ss_pred CCcEEEEEecCC-cEEEEeCCC
Q 001279 494 VDRVYLAGYHDG-SVRIWDATY 514 (1108)
Q Consensus 494 ~~~llatgs~DG-tVriWd~~~ 514 (1108)
++.+++.|+.++ .+.++|...
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 667888886554 588888763
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=46.17 E-value=50 Score=39.62 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=29.6
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeecC
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~~ 116 (1108)
.|.++.+ +..+|++.|.|+++|+||+.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555444 468999999999999999999988877644
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.00 E-value=48 Score=42.83 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=31.7
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~~~~ 115 (1108)
.+.+++..++..+|++.|.|+++||||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788999999999999999999998877653
No 371
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=43.60 E-value=2.2e+02 Score=32.33 Aligned_cols=59 Identities=20% Similarity=0.129 Sum_probs=38.5
Q ss_pred CceEEEEcCCCC-EEEEEECCCcEEEEecCCcc----eEEeC---------CCCCCEEEEEEeeC----CCEEEEEe
Q 001279 37 TASILAFDHIQR-LLAIATLDGRIKVIGGDGIE----GLLIS---------PSQLPYKNLEFLQN----QGFLISIT 95 (1108)
Q Consensus 37 ~is~la~sp~~~-~LA~Gs~dG~I~iw~~~~~~----~~~~~---------~h~~~V~~l~fs~d----~~~L~S~s 95 (1108)
....|+|.|++. .|.++...|+|++++.++.. +..+. ..+.....|+|+|+ +.+.++.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 456899999996 55667889999999765321 11111 11456788999985 44444444
No 372
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.39 E-value=26 Score=24.70 Aligned_cols=36 Identities=11% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhH
Q 001279 1041 REEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCT 1079 (1108)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1079 (1108)
-|++..++++- ..+.+++++++.|=+.||.+|++-+
T Consensus 4 k~~l~qkI~kV---drEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 4 KEELIQNMDRV---DREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp SSHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566665544 6899999999999999999998754
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=40.81 E-value=3.5e+02 Score=28.55 Aligned_cols=201 Identities=12% Similarity=0.100 Sum_probs=108.8
Q ss_pred CCCCEEEEEECCCcEEEEecCCcceE---------EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE---EcCCC----
Q 001279 45 HIQRLLAIATLDGRIKVIGGDGIEGL---------LISPSQLPYKNLEFLQNQGFLISITNDNEIQVW---SLESR---- 108 (1108)
Q Consensus 45 p~~~~LA~Gs~dG~I~iw~~~~~~~~---------~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW---d~~s~---- 108 (1108)
|+..++++-+.+|.|+--.+..-... ........+..+........|+..++.|.+.-. ++...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45678889999999987765332111 111233456666666666788888888885444 44332
Q ss_pred --eeee---eecCCCCeeEEEEe---cCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001279 109 --SLAC---CLKWESNITAFSVI---SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1108)
Q Consensus 109 --~~~~---~~~~~~~Itsl~~~---~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1108)
..+. .+.....|.++... .+..+++..+.+|.++-..++. |.... ............+.+.
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e---------~~~~~--r~G~~~i~l~~~d~lv 149 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE---------FNRLR--TAGKVAIKLVDGDELI 149 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG---------GTTCC--TTCEESSCCCTTCCEE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHH---------hhccc--cCCeEEEEECCCCEEE
Confidence 2221 12334567666543 3456899999999887776542 10000 0000001111125566
Q ss_pred EEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecC
Q 001279 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1108)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1108)
.+.... ....+++.+.+|.+..++...-... +. ...| .....-.+...|.++... .
T Consensus 150 ~~~~~~--~~~~i~l~T~~G~~irf~~~~v~~~---gr-----------------~a~G-v~~i~L~~~d~Vv~~~~~-~ 205 (307)
T 1zi0_A 150 GVDLTS--GEDEVMLFSAEGKVVRFKESSVRAM---GC-----------------NTTG-VRGIRLGEGDKVVSLIVP-R 205 (307)
T ss_dssp EEEEEC--TTCEEEEEETTSEEEEEEGGGSCBC---CT-----------------TCCC-EECCCCCTTCCEEEEECC-C
T ss_pred EEEEeC--CCCEEEEECCCCcEEEEEHHHcCcc---CC-----------------CCCC-eEeEEeCCCCEEEEEEEe-c
Confidence 655532 3445889999998877776542211 10 0000 000111124567777644 5
Q ss_pred CCCEEEEEEccCcEEEEecC
Q 001279 261 SGSILAVGYIDGDILLWNTS 280 (1108)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~ 280 (1108)
++..|++.+..|..+..++.
T Consensus 206 ~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 206 GDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp SSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEEEcCCceEEEEHH
Confidence 56778999999998888764
No 374
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=37.57 E-value=5.3e+02 Score=31.35 Aligned_cols=152 Identities=10% Similarity=0.009 Sum_probs=79.4
Q ss_pred CCCceEEEEcCC-CCEEEEEECCCcEEEEecCCcceEEeCCC-------CCCEEEEEEeeC-CCEEEEEeCCCc----EE
Q 001279 35 PATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISPS-------QLPYKNLEFLQN-QGFLISITNDNE----IQ 101 (1108)
Q Consensus 35 ~~~is~la~sp~-~~~LA~Gs~dG~I~iw~~~~~~~~~~~~h-------~~~V~~l~fs~d-~~~L~S~s~d~~----I~ 101 (1108)
.+.|.+|+++|. ...+.+|+..|.|....-.+..-..+..+ ...|.+|++.|. ...++.+..+.. -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 467999999996 45666677777777665444333322222 247999999984 344544443322 44
Q ss_pred EEEcCC-Ceeeeee----cC----C--CCeeEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001279 102 VWSLES-RSLACCL----KW----E--SNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1108)
Q Consensus 102 vWd~~s-~~~~~~~----~~----~--~~Itsl~~~~~~-~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1108)
||--.. ++--... .. . ..+..++++|.. +.++++...+.| |.-+....+..+. ...+..
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~-~~~~~~------ 164 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNV-TSIPDA------ 164 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEE-TTSCCC------
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCC-ccCccc------
Confidence 554333 2211111 10 1 135678888753 577777755533 4433222222211 001100
Q ss_pred CCCCCCCCCeEEEecccCCCCCEEEEEECC
Q 001279 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1108)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d 199 (1108)
......+..|.++|.+.+ .++++..+
T Consensus 165 ---~~~~~~~~~i~~~p~~~~-~~~~~~~~ 190 (789)
T 1sqj_A 165 ---FTNGIGYTSVIFDPERNG-TIYASATA 190 (789)
T ss_dssp ---CSTTTCEEEEEECTTSTT-CEEEEESS
T ss_pred ---cCCCCCeEEEEECCCCCC-EEEEEEcC
Confidence 001145889999987444 46776654
No 375
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=37.48 E-value=4.4e+02 Score=28.72 Aligned_cols=102 Identities=10% Similarity=0.081 Sum_probs=64.0
Q ss_pred CCCEEEEEECCCcEEEEecCCc------ceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCC---------e
Q 001279 46 IQRLLAIATLDGRIKVIGGDGI------EGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR---------S 109 (1108)
Q Consensus 46 ~~~~LA~Gs~dG~I~iw~~~~~------~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~---------~ 109 (1108)
...+|++++..|.++.-.+... ... +.......+..+....+...|+..+..|.+..++...- .
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV 191 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 191 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCe
Confidence 4579999999999999875211 111 11223456666666666678888999998888875331 1
Q ss_pred eeeeecCCCCeeEEEEec-----------------------------------CCCEEEEEeCCCcEEEEEEe
Q 001279 110 LACCLKWESNITAFSVIS-----------------------------------GSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 110 ~~~~~~~~~~Itsl~~~~-----------------------------------~~~~l~vg~~dg~V~vw~~d 147 (1108)
..-.+.....|.++...+ ...++++.++.|..+...++
T Consensus 192 ~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 192 RGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp ECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGG
T ss_pred eeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHH
Confidence 112223345666666654 34578888888877666554
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=35.41 E-value=4.3e+02 Score=28.08 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=111.2
Q ss_pred CCCCEEEEEECCCcEEEEecC-----CcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEE---EcCC------Cee
Q 001279 45 HIQRLLAIATLDGRIKVIGGD-----GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW---SLES------RSL 110 (1108)
Q Consensus 45 p~~~~LA~Gs~dG~I~iw~~~-----~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW---d~~s------~~~ 110 (1108)
|+..++++-+.+|.|+--.+. +..... ......+..+........|+-.++.|.+.-. ++.. |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~-lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFA-MKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCC-CCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccc-cCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566788999999999987653 111111 2233456666666666788888888885444 4432 222
Q ss_pred eee---ecCCCCeeEEEEecC---CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEec
Q 001279 111 ACC---LKWESNITAFSVISG---SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1108)
Q Consensus 111 ~~~---~~~~~~Itsl~~~~~---~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1108)
+.. +.....|.++....+ ..+++..+.+|.++...++. |..... ............+.+..+..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e---------~~~~~r-~~G~~ai~l~e~d~lv~~~~ 151 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKH---------YKAQRY-SKPLTGINLKNDDQVVDVHL 151 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGG---------GCCSCC-SSCEECSCCCTTCCEEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHH---------hhhccc-cCceEEEEeCCCCEEEEEEE
Confidence 211 223345666544433 56899999999888777642 111000 00000011111245665554
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCCCCCCCceeEEEeecCCCC-
Q 001279 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS- 263 (1108)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~- 263 (1108)
.. ....+++.+.+|.+..++...-+.. +. ...+.....-.+...|.++... +++.
T Consensus 152 ~~--~~~~i~l~T~~G~~irf~~~ev~~~---gR------------------~a~GV~~i~L~~~d~Vv~~~~~-~~~~~ 207 (323)
T 1wp5_A 152 TD--GMNELFLVTHNGYALWFDESEVSIV---GV------------------RAAGVKGMNLKEGDYIVSGQLI-TSKDE 207 (323)
T ss_dssp EC--SCSEEEEEETTSEEEEEEGGGSCBC---CS------------------SCCCEECCCCCTTCCEEEEEEE-CCTTC
T ss_pred eC--CCCEEEEEeCCCcEEEEEHHHCccc---CC------------------CCcCEEEEEeCCCCEEEEEEEE-cCCCc
Confidence 22 3445899999999888887652211 10 0000000111124456676655 3445
Q ss_pred EEEEEEccCcEEEEecCC
Q 001279 264 ILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~ 281 (1108)
.|+..+..|..+.-++..
T Consensus 208 ~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 208 SIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEEETTSEEEEEEGGG
T ss_pred EEEEEECCCceEEEEHHH
Confidence 788888899887766643
No 377
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=34.56 E-value=53 Score=29.36 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhHHHHhccch--hHHHHHHHHHHHhhcc
Q 001279 1055 SSVAAHARDKLFERQDKLERISRCTEELQSGAE--DFASLANELVKTMENR 1103 (1108)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~f~~~a~~~~~~~~~~ 1103 (1108)
-..|..|+.+|.+-.+....|++|-++|+..++ .|..-=.+|+++|++-
T Consensus 33 ka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~ 83 (119)
T 3etw_A 33 RAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 357888899999999999999999999988764 5777777888887753
No 378
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=34.10 E-value=5.1e+02 Score=28.48 Aligned_cols=110 Identities=9% Similarity=0.068 Sum_probs=62.1
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee-------------eeecCCCCeeEEEEecCCCEEEEEeCCCcEEEE
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA-------------CCLKWESNITAFSVISGSHFMYIGDENGLMSVI 144 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~-------------~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw 144 (1108)
.|..| +-.+.+.+....|+.|..|-....-.+ ........|..++ ....+.+.-..+|.|+.|
T Consensus 76 ~v~~v--a~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va--~G~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 76 DAVDI--SAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCIS--AGDSHSACLLEDGRVFAW 151 (423)
T ss_dssp SEEEE--EECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEE--ECSSEEEEEETTSCEEEE
T ss_pred CceEE--eeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEE--cCcCeEEEEeCCCeEEEE
Confidence 45444 445668888899999999976432111 1112234555544 355666777889999888
Q ss_pred EEe-cCCCeeee-------eceeecccccccccCCCCCCCCCeEEEecccCCCCCEEEEEECCCeEEEEEcc
Q 001279 145 KYD-ADEGKLFQ-------LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1108)
Q Consensus 145 ~~d-~~~~~l~~-------~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~ 208 (1108)
-.. ...+.+-. .|..+. ....|..|+. -..+.++-..+|.|..|-..
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~-------------~~~~i~~va~----G~~hs~alt~~G~v~~wG~n 206 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLM-------------EGTVCCSIAS----GADHLVILTTAGKVFTVGCA 206 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESS-------------TTCCEEEEEE----CSSEEEEEETTSCEEEEECC
T ss_pred eCCCCCCCCcCcCCCCCCceeeEec-------------CCCcEEEEec----CCCeEEEEecCCeEEEeeCC
Confidence 751 22233321 111111 1145777766 23346666788888888643
No 379
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=32.45 E-value=5.2e+02 Score=28.10 Aligned_cols=151 Identities=14% Similarity=0.146 Sum_probs=90.0
Q ss_pred CCCCEEEEEECCCcEEEEecC----------CcceEEeCCCCCCEEEEEEeeCCCEEEEEeCCCcEE---EEEcCCC---
Q 001279 45 HIQRLLAIATLDGRIKVIGGD----------GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ---VWSLESR--- 108 (1108)
Q Consensus 45 p~~~~LA~Gs~dG~I~iw~~~----------~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~---vWd~~s~--- 108 (1108)
|+..++++.|.+|.|+--.+. +... ........+..+........|+..++.|.+. +|++...
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~-~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSA-ASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEE-EECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCcee-cccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 677899999999999986431 1122 3333456677777777667788888888754 4454322
Q ss_pred ---eeeee---ecCCCCeeEEEEec---CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001279 109 ---SLACC---LKWESNITAFSVIS---GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1108)
Q Consensus 109 ---~~~~~---~~~~~~Itsl~~~~---~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1108)
..+.. +.....|.++.... ...+++.++..|.++...++.- .... ............+.+
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~---------~~~~--~~G~~ai~L~~~d~l 152 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEF---------AFRL--ARGKIAINLDEGDAL 152 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGG---------CSCC--TTCEESSCCCTTCCE
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHh---------hccc--CCceEEEEeCCCCEE
Confidence 22221 23345666665542 4569999999998887775531 1100 000000111122556
Q ss_pred EEEecccCCCCCEEEEEECCCeEEEEEccC
Q 001279 180 VGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1108)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~ 209 (1108)
..+.... ....+++.+.+|.+..|+...
T Consensus 153 v~v~~~~--~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 153 VGVALTD--GDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEEEC--SCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeC--CCceEEEEeCCCeEEEEEccc
Confidence 6665532 344689999999888888654
No 380
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=31.55 E-value=3.3e+02 Score=30.75 Aligned_cols=57 Identities=7% Similarity=0.062 Sum_probs=37.3
Q ss_pred EEEEEEeeCCC-EEEEEeCCCcEEEEEcCCCe---eeeeec----------CCCCeeEEEEecC---CCEEEEE
Q 001279 79 YKNLEFLQNQG-FLISITNDNEIQVWSLESRS---LACCLK----------WESNITAFSVISG---SHFMYIG 135 (1108)
Q Consensus 79 V~~l~fs~d~~-~L~S~s~d~~I~vWd~~s~~---~~~~~~----------~~~~Itsl~~~~~---~~~l~vg 135 (1108)
-..|+|.||+. +|+.+...+.|++++..... .+..+. .......|+++|+ ..+|++.
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 46889999985 56667788999999754321 111111 1356788999986 4555554
No 381
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=27.75 E-value=93 Score=27.68 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhHHHHhccch--hHHHHHHHHHHHhhc
Q 001279 1055 SSVAAHARDKLFERQDKLERISRCTEELQSGAE--DFASLANELVKTMEN 1102 (1108)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~f~~~a~~~~~~~~~ 1102 (1108)
-..|..|...|.++.+.-.+|++|-++++..++ -|..-=++|+++|++
T Consensus 33 ka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~ 82 (119)
T 2avr_X 33 RAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYED 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 367888999999998888888888888877654 367777777777765
No 382
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=27.50 E-value=88 Score=26.53 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHH---HHhhcccccc
Q 001279 1056 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV---KTMENRKWWK 1107 (1108)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~---~~~~~~~~~~ 1107 (1108)
......++-+.++.+|+=+=.||-++|.+.+++-+..|.+.. ++.+.+-||+
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwk 66 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 66 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999876 5678888996
No 383
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=27.09 E-value=5.9e+02 Score=27.05 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=114.0
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEec---CCc------ce---EEeCCCCCCEEEEEEee---CCCEEEEEeCCCcEEE
Q 001279 38 ASILAFDHIQRLLAIATLDGRIKVIGG---DGI------EG---LLISPSQLPYKNLEFLQ---NQGFLISITNDNEIQV 102 (1108)
Q Consensus 38 is~la~sp~~~~LA~Gs~dG~I~iw~~---~~~------~~---~~~~~h~~~V~~l~fs~---d~~~L~S~s~d~~I~v 102 (1108)
+..+........|..-+..|+++.... +.. .. ++.......|..+...+ +..+++.++.+|.|+-
T Consensus 44 ~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr 123 (327)
T 3uc1_A 44 VAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKK 123 (327)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEE
Confidence 444444455666777778888776543 211 11 11222344566665544 4689999999999998
Q ss_pred EEcCCC-------eeeeeecCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc--ccccCCCC
Q 001279 103 WSLESR-------SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL--SEKAGFPL 173 (1108)
Q Consensus 103 Wd~~s~-------~~~~~~~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~--~~~~~~~~ 173 (1108)
-.+..- .....+.....+..+........++..+..|.+..+... +.. ++...+ ........
T Consensus 124 ~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~--~~e-------ip~~gr~a~Gv~~i~L 194 (327)
T 3uc1_A 124 SKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSAT--DEA-------LRPMGRATSGVQGMRF 194 (327)
T ss_dssp EEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECC--TTT-------SCCCCTTSBCEESSCC
T ss_pred eEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECc--ccc-------cCcCCcCCCCeeeecC
Confidence 886431 112223334556555555566788888888955433332 001 111000 00111222
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCCcccccccccCCCCCCCCCcccCcCCC-CCCCCce
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH-QPEEKEI 252 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V 252 (1108)
...+.|.++..-+ ++..|+.++..|.++.-.+..-..... +. .+..... ..+...+
T Consensus 195 ~~~d~Vv~~~~~~--~~~~ll~~T~~G~~Krt~l~e~~~~~R-~~--------------------~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 195 NIDDRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGR-GG--------------------KGVLTVMYDRRRGRL 251 (327)
T ss_dssp CTTCCEEEEEECC--TTCEEEEEETTSEEEEEEGGGSCBCCT-TS--------------------CCEESSCCCTTTCSE
T ss_pred CCCCEEEEEEEEC--CCCEEEEEeCCCcEEEEEHHHccccCc-CC--------------------CcEEEEEecCCCCeE
Confidence 2345677776643 445699999999988777655332111 00 0000000 0112345
Q ss_pred eEEEeecCCCCEEEEEEccCcEEEEecCC
Q 001279 253 SALCWASSSGSILAVGYIDGDILLWNTST 281 (1108)
Q Consensus 253 tsl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1108)
..+... .+...++..+.+|.+.-++...
T Consensus 252 v~~~~~-~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 252 VGALIV-DDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEE-CTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEe-CCCccEEEEcCCCeEEEEehhh
Confidence 554433 4556778888899888887653
No 384
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=26.69 E-value=1.9e+02 Score=26.62 Aligned_cols=63 Identities=25% Similarity=0.290 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHhccCCChh-HHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHH-HHhhc
Q 001279 1037 RLRTREEIIAKYRKAEDAS-SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV-KTMEN 1102 (1108)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~-~~~~~ 1102 (1108)
+.-+.++|..|...|-.-. +-=+.--.+|.|+.|+-..+-+++.|. ..+|+.||.|-+ .||+.
T Consensus 41 k~~SleEIqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~Ee---n~~F~k~aeEkL~~KME~ 105 (143)
T 3ryc_E 41 RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEE---NNNFIKMAKEKLAQKMES 105 (143)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4467899999844331000 111111234566666666555555544 568999998866 56654
No 385
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=26.16 E-value=75 Score=20.01 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 001279 1056 SVAAHARDKLFERQDKLERI 1075 (1108)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~~ 1075 (1108)
.+-++|-.+|+||-.+|+++
T Consensus 7 eay~~atRALHeRFDRLEr~ 26 (30)
T 3efd_K 7 EAYTRTTRALHERFDRLERM 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35567888999999999864
No 386
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=25.23 E-value=1.2e+02 Score=23.42 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhhc
Q 001279 1056 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMEN 1102 (1108)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~ 1102 (1108)
..+...++-+.++.+|+=+=-+|-..|.+.+++.+..|....+..++
T Consensus 9 ~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~ 55 (61)
T 3b5n_A 9 AEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANR 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999998876554
No 387
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.46 E-value=1.3e+02 Score=38.67 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=28.6
Q ss_pred CeEEEecccCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001279 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1108)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl~~~~~~~~~ 216 (1108)
.+.+++..+ +...+++-+.|+.+|+||+.+++++...
T Consensus 239 ~~vs~~~~~--~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS--TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET--TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC--CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 444455433 5677899999999999999999887654
No 388
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=22.98 E-value=1.4e+02 Score=23.22 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhhc
Q 001279 1056 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMEN 1102 (1108)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~ 1102 (1108)
..+...++-+.++.+|+=+=-+|-.+|.+.+++.+..|....+..++
T Consensus 11 ~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~ 57 (63)
T 1n7s_A 11 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999998876553
No 389
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=22.77 E-value=4.1e+02 Score=31.61 Aligned_cols=72 Identities=8% Similarity=0.085 Sum_probs=44.2
Q ss_pred cCEEEEEEc----CCC---CEEEEEeCCCeE-EEEEccCceEEE-EeecCCCCCCceEEEEeeecccCccccCCCCCCCC
Q 001279 604 SPVRALQFT----SSG---AKLAVGFECGRV-AVLDMNLLSVLF-FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1108)
Q Consensus 604 ~~Vtslafs----pdg---~~LavGs~dG~V-~vwd~~~~~~~~-~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~ 674 (1108)
...|+|+.. .++ ..+..|+++|.| ++........++ .... .....+|..|.|++..
T Consensus 397 ~~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~-~~~~~pI~~l~l~~~~-------------- 461 (663)
T 1olz_A 397 VNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQL-FQDFEPVQTLLLSSKK-------------- 461 (663)
T ss_dssp CCEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEEC-CTTCCCCCEEEECCSS--------------
T ss_pred CceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecc-cCCCCcceeeEeccCC--------------
Confidence 346777763 343 478889999987 333444443333 3333 3456789889888321
Q ss_pred CCCCCCCccEEEEEcCCccEEE
Q 001279 675 EVPVNPAEEVIIVLFKDAKISI 696 (1108)
Q Consensus 675 ~~~~~p~~~~L~s~s~Dg~v~v 696 (1108)
+...|++++.++-+.|
T Consensus 462 ------~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 462 ------GNRFVYAGSNSGVVQA 477 (663)
T ss_dssp ------SSCEEEEECSSCEEEE
T ss_pred ------CccEEEEEEcCeEEEE
Confidence 1278999988875544
No 390
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=21.95 E-value=7.7e+02 Score=26.61 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=80.6
Q ss_pred CCEEEEEECCCcEEEEecCCc--------c-e---E-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeee--
Q 001279 47 QRLLAIATLDGRIKVIGGDGI--------E-G---L-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA-- 111 (1108)
Q Consensus 47 ~~~LA~Gs~dG~I~iw~~~~~--------~-~---~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~-- 111 (1108)
....+.-+.||.|+.|+.... + . . ........+..++++....+.+..+.|+.|..|-......+
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 445555577899999975321 0 0 1 11112345677788877788999999999999975432110
Q ss_pred ---------eeec-CC-CCeeEEEEecCCCEEEEEeCCCcEEEEEEecCCCee-------eeeceeecccccccccCCCC
Q 001279 112 ---------CCLK-WE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL-------FQLPYNISADALSEKAGFPL 173 (1108)
Q Consensus 112 ---------~~~~-~~-~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d~~~~~l-------~~~~~~i~~~~~~~~~~~~~ 173 (1108)
..+. .. ..|..+ .....+.++-..+|.|+.|-.... +.+ ...|..+...
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~v--a~G~~hs~alt~~G~v~~wG~n~~-GqLG~~~~~~~~~p~~v~~~---------- 208 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDV--AAGGAHSACVTAAGDLYTWGKGRY-GRLGHSDSEDQLKPKLVEAL---------- 208 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEE--EECSSEEEEEETTSCEEEEECCGG-GTTCSSSCCCEEEEEECGGG----------
T ss_pred CCCccCcCCeEecccCCCeEEEE--EeCcCeEEEEeCCCeEEEeCCCCC-CCcCCCCCcccccceEeccc----------
Confidence 1111 11 234444 445667777788999988875431 111 1112222211
Q ss_pred CCCCCeEEEecccCCCCCEEEEEECCCeEEEEEc
Q 001279 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 207 (1108)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~lWdl 207 (1108)
....|..|+.-. ...+.++-..+|.|..|-.
T Consensus 209 -~~~~v~~ia~G~--g~~~t~~l~~~G~v~~wG~ 239 (389)
T 3kci_A 209 -QGHRVVDIACGS--GDAQTLCLTDDDTVWSWGD 239 (389)
T ss_dssp -TTSCEEEEEECC--SSCEEEEEETTTEEEEEEC
T ss_pred -CCCeEEEEEEcC--CCcEEEEEccCCEEEEEeC
Confidence 113466666521 1234666778888888854
No 391
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=21.75 E-value=6.7e+02 Score=25.79 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=55.7
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEecCCcceE-EeCCCCCCEEEEEEeeCCCEEEEEeCCCcEEEEEcCCCeeee-ee
Q 001279 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC-CL 114 (1108)
Q Consensus 37 ~is~la~sp~~~~LA~Gs~dG~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWd~~s~~~~~-~~ 114 (1108)
.|..++.... ..+|. . ||.|+.|+.+..-.+ .-..-...|..++...+ +.+..+ ++.|..|-......+. ..
T Consensus 64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 5666666543 34444 5 899999987432111 11111236777666544 455666 9999999865432221 11
Q ss_pred cCCCCeeEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001279 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1108)
Q Consensus 115 ~~~~~Itsl~~~~~~~~l~vg~~dg~V~vw~~d 147 (1108)
.....|..++.- ..+.+.-. +|.|+.|-..
T Consensus 138 ~~~~~i~~i~~G--~~~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 138 EAQSGVTALDGG--VYTALAVK-NGGVIAWGDN 167 (282)
T ss_dssp GGGSSEEEEEEC--SSEEEEEE-TTEEEEEECC
T ss_pred cCCCCeEEEEcc--cCEEEEEE-CCEEEEecCC
Confidence 223456666553 33333333 7888777654
No 392
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.66 E-value=2.1e+02 Score=22.36 Aligned_cols=48 Identities=10% Similarity=0.202 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhHHHHhccchhHHHHHHHHHHHhhc
Q 001279 1055 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMEN 1102 (1108)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~ 1102 (1108)
-..+...++-+.++.+|+=+=-+|-..|.+.+++.+..|....++.++
T Consensus 15 q~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~ 62 (65)
T 1gl2_A 15 QSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQK 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999999999999887654
No 393
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.60 E-value=9.3e+02 Score=27.03 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=55.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEEeecCCCCCCceEEEEeeecccCccccCCCCCCCCCCCCCCCccEE
Q 001279 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI 685 (1108)
Q Consensus 606 Vtslafspdg~~LavGs~dG~V~vwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~p~~~~L 685 (1108)
--+|.+|+....+.+=+.-|.|.+||++++.++|.-+. ...+|..-+... ..+. +
T Consensus 261 Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI---s~~~iF~t~~~~---------------------~~~G-i 315 (494)
T 1bpo_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHE---------------------ATAG-I 315 (494)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEET---------------------TTTE-E
T ss_pred eeEEEecccCCEEEEEecCceEEEEecccceeeeeecc---cCCceEEecccC---------------------CCCc-E
Confidence 45788999888999999999999999999999998776 556665544331 1122 5
Q ss_pred EEEcCCccEEEEeCCCccee
Q 001279 686 IVLFKDAKISIVGGSSENMI 705 (1108)
Q Consensus 686 ~s~s~Dg~v~v~d~~~g~~l 705 (1108)
+...+.|.|.-...+.-.++
T Consensus 316 ~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 316 IGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEETTCEEEEEEECTTTHH
T ss_pred EEEccCceEEEEEEccccch
Confidence 55558888877776665554
No 394
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=20.57 E-value=9.1e+02 Score=26.91 Aligned_cols=27 Identities=4% Similarity=0.224 Sum_probs=19.6
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEEcC
Q 001279 78 PYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1108)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWd~~ 106 (1108)
.|..++ -.+.+.+....+|.|..|=..
T Consensus 68 ~i~~va--~G~~Ht~alt~~G~v~~wG~n 94 (473)
T 3of7_A 68 KIISFA--VGGMHTLALDEESNVWSWGCN 94 (473)
T ss_dssp CEEEEE--ECSSEEEEEETTCCEEEEECC
T ss_pred CEEEEE--eCCCeEEEEecCCeEEEeECC
Confidence 455554 445678888899999999654
Done!