Query 001280
Match_columns 1108
No_of_seqs 781 out of 5604
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8c_A Periplasmic PH-dependen 100.0 4.8E-52 1.7E-56 490.6 48.5 382 31-455 8-420 (436)
2 4fln_A Protease DO-like 2, chl 100.0 3.7E-51 1.3E-55 485.9 46.2 373 44-451 45-469 (539)
3 3pv2_A DEGQ; trypsin fold, PDZ 100.0 6.3E-52 2.2E-56 490.4 37.8 380 36-454 19-442 (451)
4 4a8c_A Periplasmic PH-dependen 100.0 5.6E-49 1.9E-53 464.5 45.7 397 619-1080 17-433 (436)
5 4fln_A Protease DO-like 2, chl 100.0 3.7E-48 1.3E-52 460.2 42.1 392 623-1073 45-478 (539)
6 3pv2_A DEGQ; trypsin fold, PDZ 100.0 5.3E-49 1.8E-53 465.4 33.2 399 619-1075 23-451 (451)
7 1ky9_A Protease DO, DEGP, HTRA 100.0 9E-50 3.1E-54 471.6 26.2 373 35-453 12-438 (448)
8 3stj_A Protease DEGQ; serine p 100.0 7.3E-45 2.5E-49 415.9 34.1 303 33-370 10-338 (345)
9 1ky9_A Protease DO, DEGP, HTRA 100.0 1.4E-46 4.9E-51 444.3 20.2 356 649-1075 86-448 (448)
10 1te0_A Protease DEGS; two doma 100.0 2.7E-41 9.2E-46 383.7 31.8 298 33-366 6-315 (318)
11 1lcy_A HTRA2 serine protease; 100.0 1.7E-40 5.9E-45 377.9 26.6 307 32-362 11-319 (325)
12 3qo6_A Protease DO-like 1, chl 100.0 1.4E-39 4.7E-44 374.0 27.4 301 30-367 11-334 (348)
13 3num_A Serine protease HTRA1; 100.0 2.9E-40 1E-44 377.5 19.7 310 31-365 9-321 (332)
14 3stj_A Protease DEGQ; serine p 100.0 1.4E-38 4.9E-43 363.8 32.4 301 619-975 17-336 (345)
15 1y8t_A Hypothetical protein RV 100.0 2.4E-38 8.3E-43 360.6 31.0 286 36-367 6-315 (324)
16 1te0_A Protease DEGS; two doma 100.0 5.3E-36 1.8E-40 340.2 27.3 300 619-974 13-316 (318)
17 3qo6_A Protease DO-like 1, chl 100.0 4.9E-34 1.7E-38 327.8 28.1 298 620-974 22-334 (348)
18 1y8t_A Hypothetical protein RV 100.0 5E-33 1.7E-37 316.8 30.1 293 619-974 10-315 (324)
19 1lcy_A HTRA2 serine protease; 100.0 3.5E-33 1.2E-37 317.6 27.4 296 620-971 20-322 (325)
20 3num_A Serine protease HTRA1; 100.0 7.1E-34 2.4E-38 324.7 19.6 303 619-974 18-323 (332)
21 3sti_A Protease DEGQ; serine p 100.0 6.7E-30 2.3E-34 277.8 19.4 203 33-246 10-235 (245)
22 1l1j_A Heat shock protease HTR 100.0 4E-29 1.4E-33 271.2 16.6 211 36-265 4-239 (239)
23 3lgi_A Protease DEGS; stress-s 100.0 1.3E-27 4.4E-32 259.9 23.0 203 32-246 16-227 (237)
24 3tjo_A Serine protease HTRA1; 100.0 5.7E-28 1.9E-32 261.4 18.7 204 31-244 26-230 (231)
25 3k6y_A Serine protease, possib 99.9 3.3E-24 1.1E-28 233.1 20.4 193 38-246 33-228 (237)
26 3sti_A Protease DEGQ; serine p 99.9 4.4E-24 1.5E-28 232.0 15.6 200 619-846 17-236 (245)
27 3lgi_A Protease DEGS; stress-s 99.9 5.8E-23 2E-27 223.2 22.8 204 618-847 23-229 (237)
28 1l1j_A Heat shock protease HTR 99.9 8.6E-24 2.9E-28 229.3 14.2 210 620-867 9-239 (239)
29 3tjo_A Serine protease HTRA1; 99.9 6.8E-22 2.3E-26 213.7 18.0 194 619-843 35-230 (231)
30 3k6y_A Serine protease, possib 99.8 2.5E-19 8.4E-24 194.6 18.4 191 619-846 35-229 (237)
31 2w5e_A Putative serine proteas 99.8 5.3E-19 1.8E-23 179.4 17.0 137 66-231 19-155 (163)
32 3rle_A Golgi reassembly-stacki 99.8 2.5E-18 8.7E-23 182.8 16.1 168 895-1079 12-184 (209)
33 2as9_A Serine protease; trypsi 99.7 1.2E-17 4.2E-22 177.8 12.8 179 47-244 3-203 (210)
34 3rle_A Golgi reassembly-stacki 99.7 5.5E-17 1.9E-21 172.5 14.0 150 295-455 14-170 (209)
35 3gsl_A Disks large homolog 4; 99.7 1.3E-15 4.4E-20 159.9 19.2 153 898-1070 34-193 (196)
36 2h5c_A Alpha-lytic protease; s 99.7 1.8E-16 6.2E-21 166.5 12.4 157 69-239 17-191 (198)
37 2l97_A HTRA, putative serine p 99.7 1.3E-16 4.4E-21 157.1 8.3 121 224-366 2-127 (134)
38 2w5e_A Putative serine proteas 99.6 3.8E-15 1.3E-19 151.1 16.5 126 647-809 19-145 (163)
39 1p1d_A PDZ45, glutamate recept 99.6 2.6E-15 9E-20 157.9 15.9 145 899-1067 36-195 (196)
40 1w9e_A Syntenin 1; cell adhesi 99.6 2E-15 6.8E-20 154.5 10.8 115 899-1043 27-143 (166)
41 3gsl_A Disks large homolog 4; 99.6 1.1E-14 3.8E-19 152.7 16.8 145 296-454 34-189 (196)
42 1agj_A Epidermolytic toxin A; 99.6 3.3E-15 1.1E-19 162.5 12.7 171 46-242 43-240 (242)
43 2qt5_A Glutamate receptor-inte 99.6 1.9E-14 6.5E-19 151.9 17.4 148 899-1069 33-197 (200)
44 2w7s_A Serine protease SPLA; h 99.6 3.3E-15 1.1E-19 157.6 11.6 155 68-240 22-195 (200)
45 2l97_A HTRA, putative serine p 99.6 1.8E-15 6.1E-20 149.0 6.8 120 826-974 5-128 (134)
46 1p1d_A PDZ45, glutamate recept 99.6 2.5E-14 8.5E-19 150.5 15.7 142 296-453 35-193 (196)
47 3r0h_A INAD, inactivation-NO-a 99.6 3.2E-14 1.1E-18 150.7 16.1 138 899-1065 45-194 (206)
48 2oua_A Serine protease, protei 99.5 1.4E-14 4.7E-19 151.0 11.7 156 68-239 14-182 (188)
49 2vid_A Serine protease SPLB; h 99.5 9.6E-14 3.3E-18 146.6 15.6 156 68-241 22-200 (204)
50 1w9e_A Syntenin 1; cell adhesi 99.5 1.9E-13 6.4E-18 139.8 16.3 144 258-451 13-162 (166)
51 2qt5_A Glutamate receptor-inte 99.5 1.7E-13 5.9E-18 144.5 16.5 143 296-454 32-194 (200)
52 2o8l_A V8 protease, taphylococ 99.5 2.9E-13 9.9E-18 149.9 18.2 170 46-241 19-208 (274)
53 3r0h_A INAD, inactivation-NO-a 99.5 3.1E-13 1.1E-17 143.1 16.6 137 297-455 45-196 (206)
54 1qtf_A Exfoliative toxin B; se 99.5 4.2E-14 1.4E-18 154.2 9.6 146 67-235 47-215 (246)
55 1wcz_A Glutamyl endopeptidase; 99.5 5.5E-13 1.9E-17 147.2 18.2 171 46-241 19-208 (268)
56 1hpg_A Glutamic acid specific 99.5 1.9E-13 6.5E-18 142.4 12.1 157 70-239 15-182 (187)
57 2ea3_A Chymotrypsin; celloulom 99.4 2.1E-13 7.2E-18 141.9 10.6 149 70-239 18-176 (189)
58 1mbm_A NSP4 proteinase, chymot 99.4 9.9E-14 3.4E-18 138.3 7.2 128 46-219 3-130 (198)
59 2pfe_A Protease A, alkaline se 99.4 2.7E-13 9.3E-18 140.7 8.6 151 71-239 18-179 (186)
60 2as9_A Serine protease; trypsi 99.4 1.7E-12 5.9E-17 137.9 13.1 169 649-844 23-204 (210)
61 2qa9_E Streptogrisin-B; chymot 99.4 1.4E-12 4.8E-17 135.7 11.1 161 68-239 12-180 (185)
62 2h5c_A Alpha-lytic protease; s 99.3 1E-11 3.6E-16 130.2 14.8 166 649-838 16-191 (198)
63 2xkx_A Disks large homolog 4; 99.2 3.8E-11 1.3E-15 150.2 16.4 152 899-1070 89-247 (721)
64 2sga_A Proteinase A; hydrolase 99.2 6.4E-12 2.2E-16 130.2 7.8 154 68-239 12-176 (181)
65 1agj_A Epidermolytic toxin A; 99.2 7.1E-11 2.4E-15 128.2 15.4 166 649-841 55-240 (242)
66 2pzd_A Serine protease HTRA2; 99.2 3E-11 1E-15 115.1 10.7 99 257-365 2-102 (113)
67 3suz_A Amyloid beta A4 precurs 99.2 5.7E-12 2E-16 146.1 4.3 131 900-1061 233-369 (388)
68 2p3w_A Probable serine proteas 99.2 4.9E-11 1.7E-15 113.4 9.1 100 257-366 2-103 (112)
69 2w7s_A Serine protease SPLA; h 99.2 8.1E-11 2.8E-15 123.8 11.0 141 649-809 22-172 (200)
70 3fan_A Non-structural protein; 99.1 3.7E-11 1.3E-15 122.0 7.4 117 66-221 28-146 (213)
71 2xkx_A Disks large homolog 4; 99.1 1.6E-10 5.6E-15 144.5 15.0 142 296-452 88-241 (721)
72 2o8l_A V8 protease, taphylococ 99.1 1.2E-09 4.1E-14 120.8 18.6 175 626-844 20-212 (274)
73 3suz_A Amyloid beta A4 precurs 99.1 2E-11 6.8E-16 141.6 4.0 121 297-441 232-362 (388)
74 1zyo_A Serine protease; beta-b 99.1 6.7E-10 2.3E-14 114.6 14.5 163 47-238 16-185 (191)
75 2oua_A Serine protease, protei 99.1 4.2E-10 1.4E-14 117.1 12.9 158 649-838 14-182 (188)
76 1uf1_A KIAA1526 protein; PDZ d 99.1 6.2E-11 2.1E-15 115.6 4.8 111 951-1082 9-119 (128)
77 1qtf_A Exfoliative toxin B; se 99.1 2.7E-10 9.3E-15 124.0 9.8 137 649-808 48-203 (246)
78 1wcz_A Glutamyl endopeptidase; 99.1 2.3E-09 8E-14 118.1 17.2 166 648-844 33-212 (268)
79 2pzd_A Serine protease HTRA2; 99.0 3.5E-10 1.2E-14 107.6 8.8 100 983-1086 6-110 (113)
80 1hpg_A Glutamic acid specific 99.0 2.2E-09 7.6E-14 111.6 15.1 162 649-838 13-182 (187)
81 2p3w_A Probable serine proteas 99.0 8.4E-10 2.9E-14 104.8 9.7 97 864-974 7-104 (112)
82 2vid_A Serine protease SPLB; h 99.0 5.7E-09 1.9E-13 109.8 15.6 164 649-842 22-202 (204)
83 2ea3_A Chymotrypsin; celloulom 98.9 4.3E-09 1.5E-13 109.4 12.4 153 649-838 16-176 (189)
84 2kl1_A YLBL protein; structure 98.9 3.2E-09 1.1E-13 97.5 9.7 72 295-367 3-76 (94)
85 3i18_A LMO2051 protein; alpha- 98.9 5.5E-09 1.9E-13 97.0 11.2 69 1007-1077 7-75 (100)
86 3i18_A LMO2051 protein; alpha- 98.9 4.6E-09 1.6E-13 97.6 10.7 71 296-367 6-78 (100)
87 3id1_A Regulator of sigma E pr 98.9 2.9E-09 1E-13 97.9 9.2 86 902-991 5-94 (95)
88 2i6v_A General secretion pathw 98.9 2.7E-09 9.2E-14 96.4 8.8 67 1008-1075 20-86 (87)
89 2kjp_A Uncharacterized protein 98.9 8E-10 2.7E-14 100.8 5.1 69 298-367 2-72 (91)
90 2pfe_A Protease A, alkaline se 98.9 4.5E-09 1.5E-13 108.9 11.0 157 650-838 16-179 (186)
91 3id1_A Regulator of sigma E pr 98.9 4.5E-09 1.5E-13 96.7 8.9 80 302-381 6-91 (95)
92 2qa9_E Streptogrisin-B; chymot 98.9 2.1E-08 7.2E-13 104.0 14.4 166 650-839 13-181 (185)
93 2vz5_A TAX1-binding protein 3; 98.9 7.4E-09 2.5E-13 102.2 10.3 96 257-365 34-135 (139)
94 2kjp_A Uncharacterized protein 98.8 9.9E-10 3.4E-14 100.2 3.3 68 1008-1077 2-69 (91)
95 2kl1_A YLBL protein; structure 98.8 5.6E-09 1.9E-13 95.8 8.0 69 1007-1077 5-73 (94)
96 2i4s_A General secretion pathw 98.8 1.7E-08 5.9E-13 94.5 11.5 101 831-970 4-105 (105)
97 2i6v_A General secretion pathw 98.8 1.3E-08 4.4E-13 92.0 9.5 68 899-970 19-87 (87)
98 2i4s_A General secretion pathw 98.8 1.2E-08 4E-13 95.7 8.9 67 1008-1075 38-104 (105)
99 1mbm_A NSP4 proteinase, chymot 98.7 2.8E-08 9.6E-13 99.4 9.8 114 647-808 13-130 (198)
100 2vz5_A TAX1-binding protein 3; 98.7 4E-08 1.4E-12 96.9 10.5 69 1006-1076 63-133 (139)
101 2fcf_A Multiple PDZ domain pro 98.7 3E-08 1E-12 92.4 8.7 84 258-356 13-100 (103)
102 2zpm_A Regulator of sigma E pr 98.7 2.6E-08 8.9E-13 90.6 7.8 66 1009-1076 6-71 (91)
103 3cyy_A Tight junction protein 98.7 1.8E-08 6.2E-13 91.8 6.8 80 268-362 7-90 (92)
104 2eaq_A LIM domain only protein 98.7 2.2E-08 7.4E-13 90.9 7.0 60 296-356 27-90 (90)
105 2rcz_A Tight junction protein 98.7 2.2E-08 7.4E-13 88.8 6.7 77 264-355 1-81 (81)
106 2eaq_A LIM domain only protein 98.7 2E-08 6.7E-13 91.2 6.4 60 1008-1068 29-90 (90)
107 2zpm_A Regulator of sigma E pr 98.7 2.7E-08 9.3E-13 90.5 7.3 64 302-365 8-73 (91)
108 1qau_A Neuronal nitric oxide s 98.6 8E-08 2.7E-12 91.0 10.0 68 1008-1077 27-97 (112)
109 3cyy_A Tight junction protein 98.6 6.3E-08 2.2E-12 88.1 8.8 65 1008-1075 24-91 (92)
110 1p3c_A Glutamyl-endopeptidase; 98.6 1.8E-07 6.3E-12 99.2 13.6 156 67-241 29-211 (215)
111 1uf1_A KIAA1526 protein; PDZ d 98.6 2.3E-08 8E-13 97.2 5.7 94 342-453 6-102 (128)
112 2pkt_A PDZ and LIM domain prot 98.6 3.5E-08 1.2E-12 89.8 6.4 60 1008-1070 28-89 (91)
113 1uit_A Human discs large 5 pro 98.6 1.4E-08 4.8E-13 97.1 3.8 89 257-359 11-105 (117)
114 2iwq_A Multiple PDZ domain pro 98.6 1E-07 3.5E-12 91.9 9.8 83 259-356 34-120 (123)
115 2pa1_A PDZ and LIM domain prot 98.6 9.8E-08 3.3E-12 86.0 8.9 58 1008-1068 27-86 (87)
116 1pq7_A Trypsin; ultra-high res 98.6 3.3E-07 1.1E-11 97.9 14.6 161 46-221 12-199 (224)
117 2vsp_A PDZ domain-containing p 98.6 5.1E-08 1.8E-12 88.7 7.0 60 1007-1069 27-88 (91)
118 3mmg_A Nuclear inclusion prote 98.6 9.5E-07 3.2E-11 92.6 17.3 164 46-233 15-183 (241)
119 3sfj_A TAX1-binding protein 3; 98.6 8.6E-08 2.9E-12 89.5 8.4 59 295-354 43-104 (104)
120 2pkt_A PDZ and LIM domain prot 98.6 3.5E-08 1.2E-12 89.8 5.3 60 297-358 27-89 (91)
121 1qau_A Neuronal nitric oxide s 98.6 1.4E-07 4.9E-12 89.3 9.7 65 297-362 26-94 (112)
122 2sga_A Proteinase A; hydrolase 98.6 1.7E-07 5.7E-12 96.9 10.6 157 650-838 13-176 (181)
123 2v90_A PDZ domain-containing p 98.6 4.8E-08 1.6E-12 89.8 5.8 60 1007-1069 30-91 (96)
124 1wh1_A KIAA1095 protein; PDZ d 98.6 4.1E-08 1.4E-12 94.9 5.4 65 1007-1073 48-113 (124)
125 2eeh_A PDZ domain-containing p 98.6 1.9E-07 6.5E-12 86.5 9.6 58 297-357 36-96 (100)
126 2edz_A PDZ domain-containing p 98.6 1.5E-08 5.2E-13 96.4 2.0 70 295-366 36-109 (114)
127 2jil_A GRIP1 protein, glutamat 98.5 9.8E-08 3.4E-12 87.9 7.2 60 1007-1069 32-94 (97)
128 2v90_A PDZ domain-containing p 98.5 4E-08 1.4E-12 90.3 4.5 63 295-359 28-93 (96)
129 1gvz_A Kallikrein-1E2; antigen 98.5 3E-06 1E-10 91.2 19.6 155 46-221 12-207 (237)
130 1wh1_A KIAA1095 protein; PDZ d 98.5 8.5E-08 2.9E-12 92.7 6.5 65 296-361 47-113 (124)
131 2w4f_A Protein LAP4; structura 98.5 8.5E-08 2.9E-12 88.3 6.2 62 1007-1069 34-95 (97)
132 2vsp_A PDZ domain-containing p 98.5 8.6E-08 2.9E-12 87.2 5.8 61 296-358 26-89 (91)
133 2hga_A Conserved protein MTH13 98.5 2.1E-07 7.2E-12 89.9 8.8 67 1006-1076 24-90 (125)
134 3tsv_A Tight junction protein 98.5 1.4E-07 4.9E-12 91.0 7.6 61 1007-1068 51-113 (124)
135 2uzc_A Human pdlim5, PDZ and L 98.5 2.3E-07 7.8E-12 83.7 8.4 58 1008-1068 28-87 (88)
136 1a7s_A Heparin binding protein 98.5 9.4E-07 3.2E-11 94.3 14.7 176 46-245 12-219 (225)
137 4e7n_A Snake-venom thrombin-li 98.5 4.6E-06 1.6E-10 89.6 20.2 188 46-246 12-231 (238)
138 2jxo_A Ezrin-radixin-moesin-bi 98.5 9E-08 3.1E-12 88.3 5.7 60 1007-1068 33-94 (98)
139 3fan_A Non-structural protein; 98.5 1.1E-07 3.9E-12 96.6 6.7 113 646-809 27-145 (213)
140 2he4_A Na(+)/H(+) exchange reg 98.5 2.7E-07 9.2E-12 83.6 8.6 59 296-356 27-88 (90)
141 2kom_A Partitioning defective 98.5 3.1E-07 1.1E-11 88.3 9.3 61 1007-1068 58-121 (121)
142 1ihj_A INAD; intermolecular di 98.5 2.6E-07 8.8E-12 85.2 8.3 59 1007-1068 37-98 (98)
143 4ag1_A Chymase; hydrolase-de n 98.5 6.1E-06 2.1E-10 88.0 20.3 181 46-242 12-222 (226)
144 2dls_A PDZ-rhogef, RHO guanine 98.5 4.1E-07 1.4E-11 83.0 9.5 60 296-356 28-88 (93)
145 2fcf_A Multiple PDZ domain pro 98.5 2.9E-07 1E-11 85.7 8.7 59 1007-1068 39-100 (103)
146 2koj_A Partitioning defective 98.5 2.7E-07 9.3E-12 87.1 8.6 62 1007-1069 39-103 (111)
147 2pa1_A PDZ and LIM domain prot 98.5 2.2E-07 7.4E-12 83.7 7.5 58 297-356 26-86 (87)
148 2i04_A Membrane-associated gua 98.5 3.5E-07 1.2E-11 81.9 8.9 54 1008-1061 26-82 (85)
149 2dls_A PDZ-rhogef, RHO guanine 98.5 1.5E-07 5.2E-12 86.0 6.3 59 1008-1068 30-88 (93)
150 2he4_A Na(+)/H(+) exchange reg 98.5 2.9E-07 1E-11 83.4 8.2 58 1007-1067 28-87 (90)
151 1vb7_A PDZ and LIM domain 2; P 98.5 1.3E-07 4.3E-12 86.6 5.6 59 1008-1069 31-91 (94)
152 3sfj_A TAX1-binding protein 3; 98.5 6.2E-07 2.1E-11 83.6 10.5 58 1006-1065 44-103 (104)
153 3qik_A Phosphatidylinositol 3, 98.5 2.1E-07 7.2E-12 85.2 6.9 55 1008-1062 40-97 (101)
154 3rp2_A RAT MAST cell protease 98.5 4.2E-06 1.4E-10 89.1 18.2 179 46-241 12-221 (224)
155 2jil_A GRIP1 protein, glutamat 98.5 1.5E-07 5E-12 86.7 5.9 61 296-358 31-95 (97)
156 3s9c_A Vipera russelli protein 98.5 1.1E-05 3.6E-10 86.6 21.4 184 46-246 12-227 (234)
157 1ihj_A INAD; intermolecular di 98.5 2.5E-07 8.4E-12 85.3 7.3 59 296-356 36-98 (98)
158 1fuj_A PR3, myeloblastin; hydr 98.5 1.9E-06 6.3E-11 91.7 15.3 153 46-219 12-192 (221)
159 2o2t_A Multiple PDZ domain pro 98.5 1E-07 3.6E-12 91.0 4.9 61 296-358 48-113 (117)
160 2xw9_A Complement factor D; im 98.4 3.6E-06 1.2E-10 90.0 17.4 179 46-241 12-225 (228)
161 2eeh_A PDZ domain-containing p 98.4 1.9E-07 6.6E-12 86.5 6.4 58 1007-1068 36-95 (100)
162 1x5q_A LAP4 protein; PDZ domai 98.4 2E-07 7E-12 87.9 6.7 63 295-358 44-108 (110)
163 2q3g_A PDZ and LIM domain prot 98.4 3.3E-07 1.1E-11 82.9 7.7 58 1008-1068 28-87 (89)
164 1mza_A Pro-granzyme K; apoptos 98.4 7.2E-06 2.5E-10 88.4 19.8 161 46-221 14-208 (240)
165 3khf_A Microtubule-associated 98.4 3.6E-07 1.2E-11 84.4 8.2 58 1008-1068 35-94 (99)
166 1uit_A Human discs large 5 pro 98.4 7.4E-08 2.5E-12 92.1 3.6 63 899-965 42-105 (117)
167 2jxo_A Ezrin-radixin-moesin-bi 98.4 1.6E-07 5.4E-12 86.6 5.6 59 297-356 33-94 (98)
168 2uzc_A Human pdlim5, PDZ and L 98.4 3E-07 1E-11 82.9 7.2 58 297-356 27-87 (88)
169 2yub_A LIMK-2, LIM domain kina 98.4 1.2E-07 4E-12 90.8 4.7 62 1007-1071 44-109 (118)
170 3cp7_A Alkaline serine proteas 98.4 4.9E-06 1.7E-10 88.5 17.8 176 46-243 6-215 (218)
171 2hga_A Conserved protein MTH13 98.4 6.1E-07 2.1E-11 86.6 9.6 66 899-972 25-90 (125)
172 1ton_A Tonin; hydrolase(serine 98.4 9.6E-06 3.3E-10 87.1 20.2 164 68-242 22-230 (235)
173 2rcz_A Tight junction protein 98.4 5.6E-07 1.9E-11 79.5 8.6 57 1008-1067 22-81 (81)
174 2awx_A Synapse associated prot 98.4 5.3E-07 1.8E-11 84.3 8.9 67 1007-1076 33-102 (105)
175 1x5q_A LAP4 protein; PDZ domai 98.4 2.8E-07 9.7E-12 86.9 7.1 60 1007-1069 46-107 (110)
176 1v5q_A GRIP1 homolog, glutamat 98.4 1.7E-07 5.7E-12 90.3 5.5 61 1008-1069 46-109 (122)
177 1b8q_A Protein (neuronal nitri 98.4 2.8E-07 9.7E-12 89.3 7.2 65 297-362 33-101 (127)
178 3bpu_A Membrane-associated gua 98.4 3.7E-07 1.3E-11 82.4 7.4 59 1007-1068 27-87 (88)
179 2w4f_A Protein LAP4; structura 98.4 3.9E-07 1.3E-11 83.8 7.7 62 898-963 33-95 (97)
180 1nf3_C PAR-6B; semi-CRIB motif 98.4 1.4E-07 4.9E-12 91.6 4.9 80 262-356 43-126 (128)
181 1rgw_A ZAsp protein; PDZ, cyph 98.4 3E-07 1E-11 82.3 6.6 58 1008-1068 26-85 (85)
182 2aiq_A Protein C activator; sn 98.4 1.9E-06 6.5E-11 92.4 14.2 180 46-245 12-223 (231)
183 2zch_P Prostate-specific antig 98.4 8.2E-06 2.8E-10 87.7 19.2 176 47-241 13-231 (237)
184 1lo6_A Kallikrein 6, HK6; seri 98.4 7.3E-06 2.5E-10 87.3 18.5 176 46-242 12-219 (223)
185 1wf7_A Enigma homologue protei 98.4 1.2E-07 4.1E-12 88.4 4.0 66 1008-1076 30-97 (103)
186 1ao5_A Glandular kallikrein-13 98.4 6.2E-06 2.1E-10 88.7 18.0 175 46-241 12-231 (237)
187 3h7t_A Group 3 allergen smipp- 98.4 3E-06 1E-10 90.8 15.4 188 46-246 12-231 (235)
188 3bpu_A Membrane-associated gua 98.4 8.4E-07 2.9E-11 80.0 9.4 59 296-356 26-87 (88)
189 1hj8_A Trypsin I; hydrolase, r 98.4 8.2E-06 2.8E-10 86.9 18.7 174 46-241 12-217 (222)
190 1uez_A KIAA1526 protein; PDZ d 98.4 3.5E-07 1.2E-11 84.9 6.9 60 296-356 34-94 (101)
191 3s69_A Thrombin-like enzyme de 98.4 5.6E-06 1.9E-10 88.6 17.5 184 46-246 12-227 (234)
192 1v5l_A PDZ and LIM domain 3; a 98.4 1.8E-07 6.2E-12 87.2 4.9 59 1008-1069 30-90 (103)
193 1kwa_A Hcask/LIN-2 protein; PD 98.4 5.5E-07 1.9E-11 81.3 7.9 58 1008-1068 26-86 (88)
194 1ueq_A Membrane associated gua 98.4 6.7E-07 2.3E-11 86.2 9.0 60 1007-1067 44-106 (123)
195 1npm_A Neuropsin; serine prote 98.4 5.8E-06 2E-10 88.2 17.2 174 46-240 12-221 (225)
196 2o2t_A Multiple PDZ domain pro 98.4 1.4E-07 4.8E-12 90.1 4.1 61 1007-1070 49-113 (117)
197 3cbz_A Dishevelled-2; PDZ doma 98.4 5.9E-07 2E-11 84.5 8.2 61 1007-1069 33-98 (108)
198 1d5g_A Human phosphatase HPTP1 98.4 5.9E-07 2E-11 82.4 8.1 59 1007-1068 33-94 (96)
199 2opg_A Multiple PDZ domain pro 98.4 7E-07 2.4E-11 82.2 8.4 61 1007-1070 30-93 (98)
200 2yub_A LIMK-2, LIM domain kina 98.4 1.4E-07 4.7E-12 90.3 3.7 63 296-360 43-110 (118)
201 2fne_A Multiple PDZ domain pro 98.4 8E-07 2.7E-11 84.9 9.0 59 1008-1069 54-115 (117)
202 2iwq_A Multiple PDZ domain pro 98.4 7.5E-07 2.6E-11 85.8 8.9 58 1007-1067 59-119 (123)
203 2z7f_E Leukocyte elastase; ser 98.4 2.1E-06 7.3E-11 91.1 13.3 149 46-219 12-189 (218)
204 2q9v_A Membrane-associated gua 98.4 4.1E-07 1.4E-11 82.4 6.6 58 1008-1066 28-88 (90)
205 4i8h_A Cationic trypsin, beta- 98.4 2.2E-06 7.5E-11 91.2 13.4 165 67-241 22-218 (223)
206 2f5y_A Regulator of G-protein 98.4 1.1E-06 3.8E-11 79.8 9.4 61 296-358 23-86 (91)
207 1vb7_A PDZ and LIM domain 2; P 98.4 3.3E-07 1.1E-11 83.9 5.9 60 296-357 29-91 (94)
208 2vwr_A Ligand of NUMB protein 98.4 8.2E-07 2.8E-11 81.3 8.6 59 296-356 28-90 (95)
209 2ejy_A 55 kDa erythrocyte memb 98.4 6.4E-07 2.2E-11 82.4 7.8 52 1008-1061 37-91 (97)
210 1uez_A KIAA1526 protein; PDZ d 98.4 2.7E-07 9.1E-12 85.7 5.3 60 1007-1068 35-94 (101)
211 3r68_A Na(+)/H(+) exchange reg 98.4 5.6E-07 1.9E-11 82.4 7.4 59 1008-1068 30-90 (95)
212 2h2b_A Tight junction protein 98.4 6.9E-07 2.3E-11 83.8 8.1 61 296-357 38-99 (107)
213 1wi2_A Riken cDNA 2700099C19; 98.4 5.1E-07 1.8E-11 84.2 7.1 58 1007-1068 41-100 (104)
214 2q3g_A PDZ and LIM domain prot 98.4 5.6E-07 1.9E-11 81.3 7.1 59 296-356 26-87 (89)
215 1wif_A RSGI RUH-020, riken cDN 98.4 3.9E-07 1.4E-11 87.9 6.4 58 1008-1066 50-110 (126)
216 1fxy_A Coagulation factor XA-t 98.4 5.2E-06 1.8E-10 88.8 15.9 166 67-241 24-222 (228)
217 1n7e_A AMPA receptor interacti 98.4 1.2E-06 3.9E-11 80.7 9.2 59 297-357 30-92 (97)
218 1g9o_A NHE-RF; PDZ domain, com 98.4 8.3E-07 2.8E-11 80.5 8.1 60 1007-1068 27-88 (91)
219 1b8q_A Protein (neuronal nitri 98.4 2.6E-07 8.8E-12 89.6 5.0 67 1008-1076 34-103 (127)
220 1cgh_A Cathepsin G; inflammati 98.4 1.3E-05 4.4E-10 85.4 18.8 177 46-240 12-219 (224)
221 4amh_A Disks large homolog 1; 98.4 1.2E-06 4E-11 82.1 9.3 59 1007-1068 32-93 (106)
222 1uep_A Membrane associated gua 98.4 2.8E-07 9.7E-12 85.8 5.0 61 1007-1068 34-97 (103)
223 1si5_H Scatter factor, hepatoc 98.3 4E-05 1.4E-09 82.5 22.7 184 46-245 11-228 (240)
224 2hlc_A Collagenase; serine pro 98.3 1.5E-05 5.1E-10 85.2 19.2 183 46-241 12-224 (230)
225 1kwa_A Hcask/LIN-2 protein; PD 98.3 8.7E-07 3E-11 80.0 8.0 58 297-356 25-86 (88)
226 1v5l_A PDZ and LIM domain 3; a 98.3 2.9E-07 1E-11 85.7 5.0 59 297-357 29-90 (103)
227 1m5z_A GRIP, AMPA receptor int 98.3 1.4E-06 4.9E-11 78.9 9.5 58 296-354 31-90 (91)
228 2i1n_A Discs, large homolog 3; 98.3 9.7E-07 3.3E-11 81.9 8.5 60 1007-1069 34-96 (102)
229 1orf_A Granzyme A; hydrolase-h 98.3 1.3E-05 4.3E-10 86.1 18.6 158 46-221 12-202 (234)
230 2kjd_A Sodium/hydrogen exchang 98.3 3.7E-08 1.3E-12 95.7 -1.3 68 1008-1077 34-105 (128)
231 2jre_A C60-1 PDZ domain peptid 98.3 6E-07 2E-11 84.3 7.1 60 1007-1069 44-106 (108)
232 1wi2_A Riken cDNA 2700099C19; 98.3 9.6E-07 3.3E-11 82.4 8.5 58 296-356 40-100 (104)
233 3khf_A Microtubule-associated 98.3 5.7E-07 2E-11 83.0 6.8 57 298-356 35-94 (99)
234 1wfg_A Regulating synaptic mem 98.3 8.3E-07 2.9E-11 86.5 8.3 110 951-1068 14-128 (131)
235 2h2b_A Tight junction protein 98.3 6.2E-07 2.1E-11 84.1 7.1 62 1006-1069 38-99 (107)
236 1n7e_A AMPA receptor interacti 98.3 1E-06 3.5E-11 81.0 8.4 60 1007-1069 30-92 (97)
237 2bdg_A Kallikrein-4; serine pr 98.3 1.2E-05 4E-10 85.8 17.9 175 46-240 12-218 (223)
238 1m5z_A GRIP, AMPA receptor int 98.3 8.1E-07 2.8E-11 80.6 7.5 57 1007-1066 32-90 (91)
239 3fzz_A Granzyme C; hydrolase, 98.3 1.3E-05 4.3E-10 85.5 18.1 181 46-241 12-223 (227)
240 2f5y_A Regulator of G-protein 98.3 1.2E-06 4E-11 79.6 8.5 58 1008-1068 25-84 (91)
241 3gov_B MAsp-1; complement, ser 98.3 1.2E-05 4.2E-10 86.9 18.2 183 46-242 12-246 (251)
242 2d90_A PDZ domain containing p 98.3 2.3E-07 7.8E-12 86.3 3.8 58 1007-1067 30-89 (102)
243 3ngh_A PDZ domain-containing p 98.3 4.3E-07 1.5E-11 85.0 5.7 61 296-358 25-88 (106)
244 2eeg_A PDZ and LIM domain prot 98.3 5.6E-07 1.9E-11 82.3 6.3 58 1008-1068 33-92 (94)
245 1wi4_A Synip, syntaxin binding 98.3 9.9E-07 3.4E-11 83.1 8.0 60 1008-1068 42-106 (109)
246 3tsv_A Tight junction protein 98.3 6.4E-07 2.2E-11 86.5 6.8 60 297-357 51-114 (124)
247 1iau_A Granzyme B; hydrolase-h 98.3 1.1E-05 3.8E-10 86.1 17.3 179 46-241 12-222 (227)
248 2yt7_A Amyloid beta A4 precurs 98.3 9.3E-07 3.2E-11 82.0 7.6 57 1008-1065 38-97 (101)
249 2kv8_A RGS12, regulator of G-p 98.3 5E-07 1.7E-11 80.5 5.6 57 296-354 22-81 (83)
250 2e7k_A Maguk P55 subfamily mem 98.3 1.3E-06 4.6E-11 79.3 8.4 56 297-354 29-87 (91)
251 2ego_A General receptor for ph 98.3 1.5E-06 5.3E-11 79.7 8.9 55 1008-1065 38-94 (96)
252 2fe5_A Presynaptic protein SAP 98.3 1.6E-06 5.4E-11 79.1 8.9 59 1007-1068 33-94 (94)
253 2byg_A Channel associated prot 98.3 1E-06 3.4E-11 84.2 7.8 59 1007-1068 54-115 (117)
254 2vsv_A Rhophilin-2; scaffold p 98.3 1.5E-06 5.2E-11 81.7 8.9 59 297-356 44-105 (109)
255 1azz_A Collagenase; complex (s 98.3 2.5E-06 8.4E-11 91.2 11.8 178 46-242 12-221 (226)
256 2jre_A C60-1 PDZ domain peptid 98.3 5.4E-07 1.9E-11 84.6 5.8 60 296-357 43-106 (108)
257 2dmz_A INAD-like protein; PDZ 98.3 1.1E-06 3.8E-11 85.4 8.2 60 1007-1069 46-108 (129)
258 3mhw_U Urokinase-type plasmino 98.3 2.6E-05 9E-10 84.0 20.0 185 46-240 12-242 (247)
259 2kpk_A Membrane-associated gua 98.3 1.5E-06 5.1E-11 84.5 9.0 59 1008-1067 44-105 (129)
260 4fgm_A Aminopeptidase N family 98.3 2E-06 6.7E-11 104.7 12.1 88 1007-1096 496-585 (597)
261 1rgw_A ZAsp protein; PDZ, cyph 98.3 6.7E-07 2.3E-11 80.0 5.9 58 297-356 25-85 (85)
262 2vsv_A Rhophilin-2; scaffold p 98.3 1.2E-06 4.3E-11 82.3 8.0 54 1008-1062 45-100 (109)
263 2eeg_A PDZ and LIM domain prot 98.3 7.4E-07 2.5E-11 81.5 6.3 59 296-356 31-92 (94)
264 1whd_A RGS3, regulator of G-pr 98.3 6.3E-07 2.1E-11 83.0 5.8 58 1008-1068 37-96 (100)
265 2jik_A Synaptojanin-2 binding 98.3 1.2E-06 4.2E-11 81.1 7.8 59 1007-1068 37-98 (101)
266 1q3o_A Shank1; PDZ, GKAP, pept 98.3 1.4E-06 4.9E-11 81.9 8.4 54 1008-1063 46-101 (109)
267 1um1_A KIAA1849 protein, RSGI 98.3 3.2E-07 1.1E-11 86.6 3.8 67 1007-1076 36-105 (110)
268 2vwr_A Ligand of NUMB protein 98.3 8.2E-07 2.8E-11 81.3 6.5 58 1008-1068 30-90 (95)
269 2psx_A Kallikrein-5; zinc inhi 98.3 1.7E-05 5.7E-10 84.7 17.8 177 46-241 12-221 (227)
270 2djt_A Unnamed protein product 98.3 1.1E-06 3.8E-11 81.8 7.5 58 1008-1068 39-99 (104)
271 2kv8_A RGS12, regulator of G-p 98.3 5.4E-07 1.9E-11 80.3 5.0 56 1008-1066 24-81 (83)
272 2d90_A PDZ domain containing p 98.3 1.3E-06 4.5E-11 81.1 7.8 60 296-357 29-91 (102)
273 2awx_A Synapse associated prot 98.3 1.2E-06 3.9E-11 82.0 7.5 65 296-362 32-100 (105)
274 1g9o_A NHE-RF; PDZ domain, com 98.3 1.6E-06 5.5E-11 78.6 8.2 60 296-356 26-88 (91)
275 3mfj_A Cationic trypsin; serin 98.3 9.2E-06 3.1E-10 86.6 15.5 164 67-241 22-218 (223)
276 2qxi_A Kallikrein-7; S1 pocket 98.3 1.1E-05 3.8E-10 86.0 16.1 142 69-220 25-193 (224)
277 3ngh_A PDZ domain-containing p 98.3 4.2E-07 1.4E-11 85.1 4.4 59 1007-1068 26-86 (106)
278 2kom_A Partitioning defective 98.3 1.5E-06 5E-11 83.5 8.3 60 296-356 57-121 (121)
279 2ejy_A 55 kDa erythrocyte memb 98.3 1.7E-06 5.7E-11 79.6 8.3 56 297-354 36-95 (97)
280 2edz_A PDZ domain-containing p 98.3 4.9E-07 1.7E-11 85.9 4.9 63 1007-1072 38-102 (114)
281 1spj_A Kallikrein 1; serine pr 98.3 8.3E-06 2.8E-10 87.7 15.3 175 46-240 12-231 (238)
282 2ego_A General receptor for ph 98.3 2E-06 6.9E-11 78.9 8.9 57 296-354 36-95 (96)
283 1y7n_A Amyloid beta A4 precurs 98.3 8.8E-07 3E-11 80.3 6.3 53 301-354 34-89 (90)
284 2zgc_A Granzyme M; serine prot 98.3 4.8E-05 1.6E-09 82.0 21.1 183 46-244 12-229 (240)
285 3r68_A Na(+)/H(+) exchange reg 98.3 1.8E-06 6.3E-11 78.9 8.4 59 297-357 29-90 (95)
286 1sgf_A 7S NGF, nerve growth fa 98.3 6.4E-06 2.2E-10 88.8 14.1 179 46-243 15-236 (240)
287 2g5m_B Neurabin-2; spinophilin 98.3 4.1E-07 1.4E-11 86.2 4.1 66 1007-1075 35-103 (113)
288 1d5g_A Human phosphatase HPTP1 98.3 1.6E-06 5.4E-11 79.5 7.9 59 296-356 32-94 (96)
289 2i04_A Membrane-associated gua 98.3 1.7E-06 5.7E-11 77.4 7.9 57 296-353 24-85 (85)
290 1wha_A KIAA0147 protein, scrib 98.3 1.2E-06 4E-11 81.9 7.2 58 1007-1067 38-98 (105)
291 2fe5_A Presynaptic protein SAP 98.3 1.5E-06 5.1E-11 79.3 7.6 60 295-356 31-94 (94)
292 2i1n_A Discs, large homolog 3; 98.3 1.6E-06 5.6E-11 80.4 7.9 61 296-358 33-97 (102)
293 2koj_A Partitioning defective 98.3 1.9E-06 6.4E-11 81.3 8.4 61 296-357 38-103 (111)
294 2la8_A Inactivation-NO-after-p 98.3 3.6E-07 1.2E-11 85.6 3.4 56 1008-1066 26-84 (106)
295 1elt_A Elastase; serine protei 98.3 1.2E-05 4E-10 86.5 15.7 162 46-221 12-209 (236)
296 2oq5_A Transmembrane protease, 98.3 5.2E-05 1.8E-09 81.1 20.8 159 46-221 12-205 (232)
297 1v62_A KIAA1719 protein; struc 98.3 1.4E-06 4.7E-11 83.2 7.5 58 1008-1068 43-103 (117)
298 1wf7_A Enigma homologue protei 98.3 4.4E-07 1.5E-11 84.5 3.8 68 899-970 29-97 (103)
299 1ujd_A KIAA0559 protein; PDZ d 98.2 1.8E-06 6.2E-11 82.4 8.2 59 1008-1069 50-111 (117)
300 2e7k_A Maguk P55 subfamily mem 98.2 1.7E-06 5.7E-11 78.6 7.5 55 1008-1065 30-86 (91)
301 2byg_A Channel associated prot 98.2 1.6E-06 5.6E-11 82.7 7.7 59 296-356 53-115 (117)
302 1va8_A Maguk P55 subfamily mem 98.2 2.2E-06 7.6E-11 81.2 8.6 59 1008-1069 49-110 (113)
303 1aut_C Activated protein C; se 98.2 2.7E-05 9.2E-10 84.4 18.4 182 46-244 12-239 (250)
304 2opg_A Multiple PDZ domain pro 98.2 1.7E-06 5.8E-11 79.6 7.5 61 297-359 30-94 (98)
305 1euf_A Duodenase; serine prote 98.2 1.3E-05 4.4E-10 85.6 15.6 157 46-220 12-199 (227)
306 3h7o_A Group 3 allergen smipp- 98.2 3.4E-06 1.2E-10 90.0 11.0 184 46-242 11-224 (228)
307 4fgm_A Aminopeptidase N family 98.2 2.5E-06 8.6E-11 103.8 11.1 68 297-366 496-566 (597)
308 1gvk_B Elastase 1, peptide inh 98.2 2.3E-05 7.8E-10 84.4 17.6 162 46-221 12-210 (240)
309 1eq9_A Chymotrypsin; FIRE ANT, 98.2 3.6E-06 1.2E-10 89.6 11.1 156 46-221 12-196 (222)
310 1uep_A Membrane associated gua 98.2 1E-06 3.5E-11 82.0 5.9 60 296-356 33-97 (103)
311 2qg1_A Multiple PDZ domain pro 98.2 2.3E-06 7.9E-11 77.7 8.1 59 296-356 28-90 (92)
312 2fne_A Multiple PDZ domain pro 98.2 2.1E-06 7E-11 82.0 8.1 60 296-357 52-115 (117)
313 3axa_A Afadin, nectin-3, prote 98.2 2.8E-06 9.5E-11 79.5 8.9 59 1007-1068 38-99 (106)
314 2iwo_A Multiple PDZ domain pro 98.2 9.9E-07 3.4E-11 84.6 5.8 60 1008-1070 54-116 (120)
315 1x6d_A Interleukin-16; PDZ dom 98.2 6.1E-07 2.1E-11 85.9 4.4 62 1007-1070 42-106 (119)
316 4amh_A Disks large homolog 1; 98.2 1.9E-06 6.4E-11 80.7 7.6 59 296-356 31-93 (106)
317 3ncl_A Suppressor of tumorigen 98.2 9.6E-06 3.3E-10 87.2 14.3 179 46-240 12-236 (241)
318 3cbz_A Dishevelled-2; PDZ doma 98.2 1.5E-06 5.2E-11 81.6 6.9 61 296-357 32-98 (108)
319 2jik_A Synaptojanin-2 binding 98.2 2E-06 6.8E-11 79.7 7.6 59 296-356 36-98 (101)
320 1m9u_A Earthworm fibrinolytic 98.2 1.4E-05 4.6E-10 86.2 15.4 164 46-219 12-210 (241)
321 1q7x_A PDZ2B domain of PTP-BAS 98.2 1.2E-06 3.9E-11 82.4 6.0 60 1007-1069 42-104 (108)
322 2r4h_A Membrane-associated gua 98.2 2.7E-06 9.1E-11 80.5 8.5 59 1008-1069 50-111 (112)
323 1y7n_A Amyloid beta A4 precurs 98.2 2.8E-06 9.5E-11 77.0 8.2 50 1010-1061 34-85 (90)
324 2kjd_A Sodium/hydrogen exchang 98.2 1.4E-06 4.7E-11 84.5 6.6 63 296-359 32-97 (128)
325 2qg1_A Multiple PDZ domain pro 98.2 2.3E-06 7.7E-11 77.8 7.6 58 1007-1067 29-89 (92)
326 2jde_A Urokinase-type plasmino 98.2 5.8E-05 2E-09 83.0 20.5 186 45-241 34-266 (276)
327 1uew_A Membrane associated gua 98.2 1.4E-06 4.6E-11 82.8 6.3 59 1008-1069 44-105 (114)
328 2yt7_A Amyloid beta A4 precurs 98.2 3.2E-06 1.1E-10 78.3 8.8 57 297-354 37-98 (101)
329 3o46_A Maguk P55 subfamily mem 98.2 2.8E-06 9.5E-11 77.4 8.2 56 1008-1066 29-87 (93)
330 1nf3_C PAR-6B; semi-CRIB motif 98.2 2.7E-06 9.2E-11 82.5 8.5 58 1008-1068 66-126 (128)
331 3kzd_A TIAM-1, T-lymphoma inva 98.2 2.7E-06 9.2E-11 77.4 7.9 51 1007-1061 35-87 (94)
332 2r0l_A Hepatocyte growth facto 98.2 6E-05 2.1E-09 81.4 20.2 181 46-243 12-238 (248)
333 1bru_P Elastase, PPE; serine p 98.2 5.4E-05 1.8E-09 81.6 19.7 162 46-221 12-211 (241)
334 1vae_A Rhophilin 2, rhophilin, 98.2 1.2E-06 4E-11 82.9 5.5 54 1008-1062 37-92 (111)
335 2dm8_A INAD-like protein; PDZ 98.2 1.4E-06 4.7E-11 83.0 6.1 60 1007-1069 43-105 (116)
336 1v5q_A GRIP1 homolog, glutamat 98.2 1.4E-06 4.9E-11 83.7 6.3 60 297-357 45-109 (122)
337 1v62_A KIAA1719 protein; struc 98.2 1.4E-06 4.8E-11 83.2 6.1 56 299-356 44-103 (117)
338 2djt_A Unnamed protein product 98.2 1.6E-06 5.6E-11 80.7 6.4 60 296-357 37-100 (104)
339 2asu_B Hepatocyte growth facto 98.2 1.6E-05 5.5E-10 85.3 15.2 179 46-240 9-222 (234)
340 3qe1_A Sorting nexin-27, G pro 98.2 3.5E-06 1.2E-10 78.9 8.6 57 1008-1067 44-102 (107)
341 1wha_A KIAA0147 protein, scrib 98.2 2.1E-06 7.2E-11 80.2 7.0 59 296-356 37-99 (105)
342 1ueq_A Membrane associated gua 98.2 2.9E-06 9.9E-11 81.7 8.2 60 296-356 43-107 (123)
343 1va8_A Maguk P55 subfamily mem 98.2 4E-06 1.4E-10 79.4 9.0 60 296-357 47-110 (113)
344 2d92_A INAD-like protein; PDZ 98.2 3.3E-06 1.1E-10 79.3 8.3 57 1007-1065 44-103 (108)
345 2iwn_A Multiple PDZ domain pro 98.2 2.7E-06 9.3E-11 77.9 7.5 59 1007-1068 33-94 (97)
346 1wg6_A Hypothetical protein (r 98.2 1E-06 3.6E-11 85.3 4.9 60 1008-1068 56-123 (127)
347 2db5_A INAD-like protein; PDZ 98.2 2.8E-06 9.7E-11 82.3 8.0 58 1007-1067 54-115 (128)
348 2z17_A Pleckstrin homology SEC 98.2 1.6E-06 5.6E-11 80.8 6.0 53 1007-1061 48-102 (104)
349 1mfg_A ERB-B2 interacting prot 98.2 3E-06 1E-10 77.5 7.7 59 295-355 33-93 (95)
350 2edp_A Fragment, shroom family 98.2 2E-06 6.8E-11 79.6 6.5 58 1008-1068 36-95 (100)
351 3e17_A Tight junction protein 98.2 4.1E-06 1.4E-10 75.5 8.3 52 1008-1061 22-76 (88)
352 1ujv_A Membrane associated gua 98.2 3.2E-06 1.1E-10 77.6 7.6 59 1008-1069 33-93 (96)
353 3i4w_A Disks large homolog 4; 98.2 3.3E-06 1.1E-10 78.5 7.8 59 297-356 35-96 (104)
354 2r4h_A Membrane-associated gua 98.2 3.1E-06 1.1E-10 80.1 7.7 60 296-357 48-111 (112)
355 1ujd_A KIAA0559 protein; PDZ d 98.2 1.8E-06 6.2E-11 82.3 6.1 59 297-357 49-111 (117)
356 2dmz_A INAD-like protein; PDZ 98.2 1.7E-06 5.8E-11 84.1 5.9 61 296-358 45-109 (129)
357 3axa_A Afadin, nectin-3, prote 98.2 3.2E-06 1.1E-10 79.0 7.7 60 296-357 37-100 (106)
358 2yuy_A RHO GTPase activating p 98.2 7.3E-07 2.5E-11 86.3 3.3 59 1007-1068 61-121 (126)
359 1q7x_A PDZ2B domain of PTP-BAS 98.2 2.4E-06 8.1E-11 80.2 6.7 60 296-357 41-104 (108)
360 2iwn_A Multiple PDZ domain pro 98.2 3E-06 1E-10 77.6 7.2 59 296-356 32-94 (97)
361 3b76_A E3 ubiquitin-protein li 98.1 4.4E-06 1.5E-10 79.8 8.5 54 1007-1062 53-109 (118)
362 3hpk_A Protein interacting wit 98.1 1.1E-06 3.7E-11 85.0 4.2 55 1008-1065 46-103 (125)
363 3nfk_A Tyrosine-protein phosph 98.1 3.5E-06 1.2E-10 78.9 7.6 58 1008-1066 44-107 (107)
364 3gyl_B Prostasin; ENAC, zymoge 98.1 8E-05 2.7E-09 81.0 19.6 99 46-157 12-131 (261)
365 2dlu_A INAD-like protein; PDZ 98.1 3.1E-06 1.1E-10 79.8 7.3 59 1008-1069 39-100 (111)
366 2q9v_A Membrane-associated gua 98.1 2.9E-06 9.9E-11 76.7 6.7 59 296-355 26-89 (90)
367 1vae_A Rhophilin 2, rhophilin, 98.1 2.2E-06 7.7E-11 80.9 6.1 56 297-353 36-94 (111)
368 2any_A Kininogenin, plasma kal 98.1 8E-05 2.7E-09 80.1 19.3 184 46-242 12-234 (241)
369 1q3o_A Shank1; PDZ, GKAP, pept 98.1 3.9E-06 1.3E-10 78.9 7.7 56 297-354 45-103 (109)
370 3bg8_A Coagulation factor XIA 98.1 7E-05 2.4E-09 80.5 18.6 163 46-221 12-210 (238)
371 3beu_A Trypsin, SGT; beta shee 98.1 3E-05 1E-09 82.4 15.6 164 69-241 21-219 (224)
372 3k1r_A Harmonin; protein-prote 98.1 4.3E-06 1.5E-10 87.1 8.7 57 1008-1068 111-169 (192)
373 1um1_A KIAA1849 protein, RSGI 98.1 3.1E-06 1.1E-10 79.7 6.8 64 296-361 35-102 (110)
374 2qkv_A Inactivation-NO-after-p 98.1 4E-06 1.4E-10 76.9 7.3 58 296-354 30-90 (96)
375 1mfg_A ERB-B2 interacting prot 98.1 5.4E-06 1.8E-10 75.8 8.2 56 1007-1066 35-92 (95)
376 2dkr_A LIN-7 homolog B; LIN-7B 98.1 4.1E-06 1.4E-10 76.2 7.4 57 1008-1067 31-90 (93)
377 1wfv_A Membrane associated gua 98.1 1.8E-06 6.3E-11 80.1 5.1 58 1008-1068 37-97 (103)
378 2eno_A Synaptojanin-2-binding 98.1 4.5E-06 1.5E-10 79.9 8.0 59 1007-1068 47-108 (120)
379 2qkv_A Inactivation-NO-after-p 98.1 2.8E-06 9.7E-11 77.9 6.3 56 1008-1066 32-90 (96)
380 1wf8_A Neurabin-I; PDZ domain, 98.1 5.1E-06 1.7E-10 77.8 8.1 59 1007-1068 40-101 (107)
381 3qik_A Phosphatidylinositol 3, 98.1 5E-06 1.7E-10 76.2 7.7 55 297-352 39-98 (101)
382 3e17_A Tight junction protein 98.1 2.4E-06 8.3E-11 77.1 5.7 56 297-354 21-80 (88)
383 1wfg_A Regulating synaptic mem 98.1 3.4E-06 1.2E-10 82.2 7.1 60 296-356 64-128 (131)
384 2gzv_A PRKCA-binding protein; 98.1 6.8E-06 2.3E-10 78.0 9.0 55 297-353 50-108 (114)
385 3i4w_A Disks large homolog 4; 98.1 2.9E-06 9.8E-11 79.0 6.3 57 1008-1067 36-95 (104)
386 1wif_A RSGI RUH-020, riken cDN 98.1 2.3E-06 7.9E-11 82.5 5.8 57 297-354 49-110 (126)
387 2la8_A Inactivation-NO-after-p 98.1 3.5E-06 1.2E-10 78.8 6.8 59 296-355 24-85 (106)
388 3o46_A Maguk P55 subfamily mem 98.1 4.8E-06 1.6E-10 75.8 7.5 59 296-356 27-89 (93)
389 2dlu_A INAD-like protein; PDZ 98.1 4.6E-06 1.6E-10 78.6 7.6 59 297-357 38-100 (111)
390 1tp5_A Presynaptic density pro 98.1 4.4E-06 1.5E-10 79.9 7.5 59 297-356 38-99 (119)
391 2g5m_B Neurabin-2; spinophilin 98.1 3.3E-06 1.1E-10 79.9 6.6 64 296-361 34-101 (113)
392 4e34_A Golgi-associated PDZ an 98.1 7.6E-06 2.6E-10 73.4 8.7 52 1008-1061 29-83 (87)
393 1x5n_A Harmonin; PDZ domain, u 98.1 6.5E-07 2.2E-11 85.0 1.6 65 1007-1075 41-108 (114)
394 2qbw_A PDZ-fibronectin fusion 98.1 6.5E-06 2.2E-10 85.8 9.4 69 295-364 22-95 (195)
395 1rtf_B (TC)-T-PA, two chain ti 98.1 0.00013 4.4E-09 79.0 20.0 167 46-221 12-225 (252)
396 1qav_A Alpha-1 syntrophin (res 98.1 8.2E-06 2.8E-10 73.8 8.7 52 1008-1061 31-85 (90)
397 1wi4_A Synip, syntaxin binding 98.1 3.1E-06 1.1E-10 79.6 6.1 59 297-356 41-106 (109)
398 2gzv_A PRKCA-binding protein; 98.1 6.2E-06 2.1E-10 78.3 8.2 52 1008-1061 51-105 (114)
399 3l4f_D SH3 and multiple ankyri 98.1 6.4E-06 2.2E-10 80.3 8.5 57 1008-1067 66-124 (132)
400 3kzd_A TIAM-1, T-lymphoma inva 98.1 4.6E-06 1.6E-10 75.8 7.0 53 296-352 34-89 (94)
401 3qe1_A Sorting nexin-27, G pro 98.1 4.3E-06 1.5E-10 78.2 7.0 56 299-356 45-103 (107)
402 1yc0_A Hepatocyte growth facto 98.1 0.00011 3.9E-09 81.0 19.8 180 46-242 47-272 (283)
403 2f91_A Hepatopancreas trypsin; 98.1 1.4E-05 4.8E-10 85.9 12.0 164 46-221 12-211 (237)
404 3b76_A E3 ubiquitin-protein li 98.1 6.8E-06 2.3E-10 78.4 8.4 58 295-354 51-112 (118)
405 1wfv_A Membrane associated gua 98.1 2E-06 6.9E-11 79.9 4.6 58 297-356 36-97 (103)
406 2edv_A FERM and PDZ domain-con 98.1 3.2E-06 1.1E-10 77.6 5.9 58 296-355 30-89 (96)
407 1x6d_A Interleukin-16; PDZ dom 98.1 1.5E-06 5E-11 83.2 3.7 63 296-359 41-107 (119)
408 1tp5_A Presynaptic density pro 98.1 3.9E-06 1.3E-10 80.2 6.6 57 1008-1067 39-98 (119)
409 1ddj_A Plasminogen; catalytic 98.1 0.00017 5.8E-09 77.9 20.5 181 46-241 29-242 (247)
410 2kpk_A Membrane-associated gua 98.1 5.3E-06 1.8E-10 80.6 7.5 59 297-356 43-106 (129)
411 2yuy_A RHO GTPase activating p 98.1 1.2E-06 4.2E-11 84.7 3.0 59 296-356 60-121 (126)
412 2daz_A INAD-like protein; PDZ 98.1 6.2E-06 2.1E-10 79.5 7.9 59 1008-1069 52-113 (124)
413 1lvm_A Catalytic domain of the 98.1 6.5E-05 2.2E-09 78.3 15.9 173 45-242 22-201 (229)
414 1ujv_A Membrane associated gua 98.1 1E-05 3.5E-10 74.2 8.9 57 297-356 32-92 (96)
415 1wf8_A Neurabin-I; PDZ domain, 98.1 3.4E-06 1.2E-10 79.0 5.8 59 296-356 39-101 (107)
416 1ym0_A Fibrinotic enzyme compo 98.1 0.00011 3.7E-09 78.8 18.4 182 46-241 12-233 (238)
417 1arb_A Achromobacter protease 98.1 1E-05 3.6E-10 88.5 10.5 154 44-221 20-213 (268)
418 2iwo_A Multiple PDZ domain pro 98.1 2.6E-06 9.1E-11 81.6 5.0 63 899-965 53-117 (120)
419 2db5_A INAD-like protein; PDZ 98.1 3.9E-06 1.3E-10 81.3 6.2 59 296-356 53-116 (128)
420 2d92_A INAD-like protein; PDZ 98.1 4.8E-06 1.7E-10 78.1 6.5 58 296-354 43-104 (108)
421 2d8i_A T-cell lymphoma invasio 98.1 5.2E-06 1.8E-10 78.7 6.7 54 1008-1066 45-100 (114)
422 1uhp_A Hypothetical protein KI 98.0 9.2E-06 3.1E-10 76.0 8.4 58 1007-1067 41-101 (107)
423 1t8o_A Chymotrypsin A; chymotr 98.0 8.5E-05 2.9E-09 80.2 17.3 178 46-241 27-240 (245)
424 2eno_A Synaptojanin-2-binding 98.0 4.6E-06 1.6E-10 79.9 6.4 60 296-357 46-109 (120)
425 1whd_A RGS3, regulator of G-pr 98.0 3.6E-06 1.2E-10 77.9 5.5 58 297-356 36-96 (100)
426 4dgj_A Enteropeptidase catalyt 98.0 5.3E-05 1.8E-09 81.1 15.4 160 46-221 12-209 (235)
427 2dm8_A INAD-like protein; PDZ 98.0 4.6E-06 1.6E-10 79.3 6.2 59 297-357 43-105 (116)
428 1i16_A Interleukin 16, LCF; cy 98.0 3.7E-06 1.3E-10 81.8 5.6 58 1008-1067 58-118 (130)
429 1pyt_D TC, PCPA-TC, chymotryps 98.0 0.00014 4.6E-09 78.9 18.7 163 46-221 25-222 (251)
430 1n7t_A 99-MER peptide of densi 98.0 5.1E-06 1.7E-10 77.2 6.3 58 296-355 42-101 (103)
431 1uju_A Scribble; PDZ domain, c 98.0 1.9E-06 6.4E-11 81.4 3.3 59 1007-1068 44-105 (111)
432 3f1s_B Vitamin K-dependent pro 98.0 4.4E-05 1.5E-09 84.4 14.9 187 43-244 61-276 (283)
433 1r6j_A Syntenin 1; PDZ, membra 98.0 1.1E-05 3.6E-10 71.6 7.5 51 1010-1062 26-78 (82)
434 1x5n_A Harmonin; PDZ domain, u 98.0 5.6E-06 1.9E-10 78.4 6.1 60 296-358 40-103 (114)
435 1fc6_A Photosystem II D1 prote 98.0 2.2E-05 7.6E-10 90.9 12.3 78 1007-1086 99-181 (388)
436 1uew_A Membrane associated gua 98.0 6.2E-06 2.1E-10 78.2 6.3 58 298-357 44-105 (114)
437 2ehr_A INAD-like protein; PDZ 98.0 4.8E-06 1.6E-10 79.3 5.5 56 1007-1065 50-108 (117)
438 2dkr_A LIN-7 homolog B; LIN-7B 98.0 7.8E-06 2.7E-10 74.3 6.6 59 296-356 29-91 (93)
439 1fon_A Procarboxypeptidase A-S 98.0 1.5E-05 5.1E-10 85.8 9.9 162 46-221 10-210 (240)
440 3l4f_D SH3 and multiple ankyri 98.0 1.1E-05 3.6E-10 78.8 7.8 58 297-356 65-125 (132)
441 1v6b_A Harmonin isoform A1; st 98.0 6.7E-06 2.3E-10 78.5 6.3 57 1008-1065 44-105 (118)
442 2cs5_A Tyrosine-protein phosph 98.0 6E-06 2.1E-10 78.9 5.9 61 1008-1069 42-108 (119)
443 2qbw_A PDZ-fibronectin fusion 98.0 1.2E-05 4E-10 83.9 8.5 67 1007-1077 24-95 (195)
444 3egg_C Spinophilin; PP1, serin 98.0 1.5E-05 5E-10 81.2 8.9 57 1007-1066 111-170 (170)
445 2eei_A PDZ domain-containing p 98.0 5.6E-06 1.9E-10 77.3 5.4 58 1007-1067 32-91 (106)
446 3k1r_A Harmonin; protein-prote 98.0 9.5E-06 3.2E-10 84.5 7.7 57 297-356 110-169 (192)
447 1wg6_A Hypothetical protein (r 98.0 5E-06 1.7E-10 80.5 5.2 59 297-356 55-123 (127)
448 2jkh_A Activated factor XA hea 98.0 3.7E-05 1.3E-09 82.7 12.5 169 67-243 24-232 (241)
449 2edv_A FERM and PDZ domain-con 98.0 4.9E-06 1.7E-10 76.3 4.7 56 1008-1067 32-89 (96)
450 1ufx_A KIAA1526 protein; PDZ d 98.0 6.5E-06 2.2E-10 76.6 5.5 59 1008-1067 33-97 (103)
451 1zyo_A Serine protease; beta-b 98.0 7.6E-05 2.6E-09 76.9 14.1 154 648-837 26-185 (191)
452 2dc2_A GOPC, golgi associated 98.0 1.9E-05 6.4E-10 73.4 8.7 53 1008-1062 36-91 (103)
453 2bz6_H Blood coagulation facto 98.0 0.00012 4.2E-09 79.3 16.6 185 46-246 12-242 (254)
454 1n7t_A 99-MER peptide of densi 98.0 7.9E-06 2.7E-10 75.9 6.1 56 1007-1066 43-100 (103)
455 2vnt_A Urokinase-type plasmino 98.0 0.00049 1.7E-08 75.4 21.5 191 45-244 34-269 (276)
456 3hpk_A Protein interacting wit 98.0 2.4E-05 8.2E-10 75.4 9.6 56 296-353 44-103 (125)
457 3h5c_B Vitamin K-dependent pro 98.0 3.5E-05 1.2E-09 86.7 12.4 163 45-221 104-292 (317)
458 3shw_A Tight junction protein 97.9 1.3E-05 4.4E-10 94.0 9.0 76 1008-1084 24-111 (468)
459 2edp_A Fragment, shroom family 97.9 8.2E-06 2.8E-10 75.4 5.9 58 297-356 35-95 (100)
460 2daz_A INAD-like protein; PDZ 97.9 6.8E-06 2.3E-10 79.2 5.5 59 297-357 51-113 (124)
461 2z17_A Pleckstrin homology SEC 97.9 1E-05 3.4E-10 75.4 6.5 54 296-351 47-103 (104)
462 3soe_A Membrane-associated gua 97.9 2E-05 6.9E-10 74.1 8.5 59 1008-1069 35-95 (113)
463 1fc6_A Photosystem II D1 prote 97.9 3E-05 1E-09 89.8 11.9 66 296-362 98-169 (388)
464 2csj_A TJP2 protein; PDZ domai 97.9 6.2E-06 2.1E-10 78.6 5.0 59 296-356 45-105 (117)
465 3tvj_B Mannan-binding lectin s 97.9 0.00021 7.3E-09 76.5 17.7 90 67-158 21-132 (242)
466 2olg_A Pro-phenoloxidase activ 97.9 0.0003 1E-08 77.3 19.3 167 46-221 34-251 (278)
467 1uju_A Scribble; PDZ domain, c 97.9 3.4E-06 1.2E-10 79.6 2.9 60 295-356 42-105 (111)
468 3tsz_A Tight junction protein 97.9 1.3E-05 4.3E-10 92.7 8.2 76 1007-1083 31-118 (391)
469 1z8g_A Serine protease hepsin; 97.9 0.00022 7.4E-09 82.1 18.6 169 67-242 140-358 (372)
470 2ehr_A INAD-like protein; PDZ 97.9 1.3E-05 4.3E-10 76.4 6.3 59 296-356 49-111 (117)
471 1r6j_A Syntenin 1; PDZ, membra 97.9 1.4E-05 4.7E-10 70.9 6.0 50 303-353 28-80 (82)
472 2eei_A PDZ domain-containing p 97.9 9.5E-06 3.3E-10 75.7 5.2 59 296-356 31-92 (106)
473 3rm2_H Thrombin heavy chain; s 97.9 0.00024 8.1E-09 77.0 17.1 101 46-157 12-143 (259)
474 2wph_S Coagulation factor IXA 97.9 6.1E-05 2.1E-09 80.7 12.3 177 46-240 12-229 (235)
475 3egg_C Spinophilin; PP1, serin 97.9 2.1E-05 7.3E-10 80.0 8.0 57 296-354 110-170 (170)
476 1uhp_A Hypothetical protein KI 97.9 1.7E-05 5.9E-10 74.2 6.8 59 296-356 40-102 (107)
477 2csj_A TJP2 protein; PDZ domai 97.9 5.6E-06 1.9E-10 78.9 3.4 59 1007-1069 46-106 (117)
478 3gge_A PDZ domain-containing p 97.9 3.4E-05 1.2E-09 69.9 8.3 57 1008-1064 29-88 (95)
479 2krg_A Na(+)/H(+) exchange reg 97.9 1.2E-06 3.9E-11 92.8 -1.7 73 1008-1083 34-111 (216)
480 2d8i_A T-cell lymphoma invasio 97.9 1.3E-05 4.6E-10 75.8 5.8 55 297-355 44-101 (114)
481 3nfk_A Tyrosine-protein phosph 97.9 1.4E-05 4.9E-10 74.7 5.9 57 297-354 43-107 (107)
482 2f9n_A Alpha I tryptase; serin 97.9 0.00038 1.3E-08 74.9 18.1 102 46-157 12-132 (245)
483 1fiw_A Beta-acrosin heavy chai 97.9 0.00051 1.7E-08 76.1 19.4 165 46-221 12-223 (290)
484 2qy0_B Complement C1R subcompo 97.8 7.7E-05 2.6E-09 80.2 12.3 171 68-241 22-236 (242)
485 1qav_A Alpha-1 syntrophin (res 97.8 3.3E-05 1.1E-09 69.7 7.7 57 899-959 30-88 (90)
486 1um7_A Synapse-associated prot 97.8 1.1E-05 3.8E-10 76.1 4.6 58 1007-1067 39-99 (113)
487 1i16_A Interleukin 16, LCF; cy 97.8 1.8E-05 6.3E-10 76.8 6.3 60 296-356 56-119 (130)
488 3tsz_A Tight junction protein 97.8 2.4E-05 8.2E-10 90.4 8.3 61 296-357 30-94 (391)
489 1ufx_A KIAA1526 protein; PDZ d 97.8 1.4E-05 4.8E-10 74.3 4.5 56 301-356 35-98 (103)
490 4dur_A Plasminogen, serine pro 97.8 0.00049 1.7E-08 86.2 19.7 182 46-241 573-786 (791)
491 4e34_A Golgi-associated PDZ an 97.8 4.6E-05 1.6E-09 68.2 7.3 55 899-959 28-86 (87)
492 3mmg_A Nuclear inclusion prote 97.8 0.00046 1.6E-08 72.4 15.7 174 624-841 14-194 (241)
493 3soe_A Membrane-associated gua 97.8 8.5E-05 2.9E-09 69.9 9.3 59 297-358 34-96 (113)
494 2cs5_A Tyrosine-protein phosph 97.7 3.7E-05 1.3E-09 73.3 6.8 59 297-356 41-107 (119)
495 1um7_A Synapse-associated prot 97.7 1.6E-05 5.6E-10 75.0 3.9 58 297-356 39-100 (113)
496 2bdy_A Thrombin; thrombin, com 97.7 0.00066 2.3E-08 75.1 17.5 101 46-157 42-173 (289)
497 1v6b_A Harmonin isoform A1; st 97.7 3.6E-05 1.2E-09 73.4 6.3 57 298-354 43-106 (118)
498 2krg_A Na(+)/H(+) exchange reg 97.7 1.2E-05 4.1E-10 85.0 3.1 60 297-358 33-96 (216)
499 4f4o_C Haptoglobin; globin fol 97.7 0.001 3.4E-08 75.7 19.0 89 67-158 125-228 (347)
500 1zjk_A Mannan-binding lectin s 97.6 0.001 3.5E-08 77.3 18.6 181 46-241 173-398 (403)
No 1
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=100.00 E-value=4.8e-52 Score=490.65 Aligned_cols=382 Identities=19% Similarity=0.308 Sum_probs=317.0
Q ss_pred CccCchhHHHHHHHhCCceEEEEEeeee------------ccCC------CCCCccEEEEEEEeCCCcEEEEcccccCCC
Q 001280 31 NVATADDWRKALNKVVPAVVVLRTTACR------------AFDT------EAAGASYATGFVVDKRRGIILTNRHVVKPG 92 (1108)
Q Consensus 31 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~------------~~d~------~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~ 92 (1108)
.++..++|.++++++.||||+|.+.... .|+. .....+.||||+|++++||||||+|||. +
T Consensus 8 ~~~~~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~~~G~IlTn~Hvv~-~ 86 (436)
T 4a8c_A 8 DQAPLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-Q 86 (436)
T ss_pred cccCCCCHHHHHHhhCCcEEEEEEEEeecccccCcchhhhhcccccccccCCcCceEEEEEEEECCCCEEEECHHHhC-C
Confidence 3445678999999999999999987532 1221 2234688999999984499999999999 5
Q ss_pred CeEEEEEecCCeEEeEEEEEEcCCCceEEEEEC-CCCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEe
Q 001280 93 PVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYD-PSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARL 171 (1108)
Q Consensus 93 ~~~~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d-~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~ 171 (1108)
...+.|++.|++.++|++++.|+.+||||||++ +..++++.++. +..+++|++|+++|||.+...+++.|+|+++
T Consensus 87 a~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv~~~~~l~~~~l~~----s~~~~~G~~v~aiG~P~g~~~~vt~G~vs~~ 162 (436)
T 4a8c_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSAL 162 (436)
T ss_pred CCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEecCCCCCceEeccC----cccCCCCCEEEEEEcCCCCCccEEEEEEeee
Confidence 678999999999999999999999999999995 44555555554 6789999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHHHhcCC
Q 001280 172 DRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERRD 247 (1108)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l~~~~~ 247 (1108)
++.. +....|. .+||+|+++++|+|||||||.+|+||||+++.... .+++|+||++.+++++++|.+.+
T Consensus 163 ~r~~--~~~~~~~----~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g- 235 (436)
T 4a8c_A 163 GRSG--LNLEGLE----NFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG- 235 (436)
T ss_pred cccc--cCCCCcc----CEEEEcCccCCCCCcCcccCCCCEEEEEEeeeccCCCCceeEEEEEehHHHHHHHHHHHhcc-
Confidence 8861 2222333 36999999999999999999999999999876543 46899999999999999999988
Q ss_pred cccccccccccCCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECC
Q 001280 248 CNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNG 326 (1108)
Q Consensus 248 ~~~~~~~~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG 326 (1108)
.+.|||||+.++.++.+.++.|||+ ...|++| ..|.++|||++ ||++||+|++|||
T Consensus 236 ---------~v~r~~lGv~~~~~~~~~a~~~gl~-------------~~~G~~V-~~V~~~spA~~aGL~~GD~I~~vnG 292 (436)
T 4a8c_A 236 ---------EIKRGLLGIKGTEMSADIAKAFNLD-------------VQRGAFV-SEVLPGSGSAKAGVKAGDIITSLNG 292 (436)
T ss_pred ---------ccccccCceEecccCHHHHHHhCCC-------------CCcceEE-EEECCCChHHHCCCCCCCEEEEECC
Confidence 7899999999999999999999998 5689888 69999999999 9999999999999
Q ss_pred EEeCChhHHHHHHh-cCCCCeEEEEEEECCEEEEEEE-cccccccCCC---cccccCCeEEccCCHHHhhccCcCCCeEE
Q 001280 327 EVITQFLKLETLLD-DGVDKNIELLIERGGISMTVNL-VQDLHSITPD---YFLEVSGAVIHPLSYQQARNFRFPCGLVY 401 (1108)
Q Consensus 327 ~~v~~~~~l~~~l~-~~~g~~v~l~V~R~g~~~~~~v-~~~~~~~~~~---~~~~~~G~~~~~l~~q~~~~~~~~~~gv~ 401 (1108)
++|.+|.++..++. ..+|++++|+|.|+|+.+++++ +..++..... ..+.+.|..+.+... . -...|++
T Consensus 293 ~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~~~---~---~~~~gv~ 366 (436)
T 4a8c_A 293 KPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQL---K---DGGKGIK 366 (436)
T ss_pred EECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCcccccccccccCceeeecccccc---c---CCCCCEE
Confidence 99999999998885 4689999999999999999999 8776533221 123333433332221 0 0125788
Q ss_pred EE--CCCChhHHcCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCCeEEEEEeeec
Q 001280 402 VA--EPGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYT 455 (1108)
Q Consensus 402 v~--~~~~~a~~aGl~~Gd~I~~Vng~~v~~l~~~~~~i~~~~~~~~v~l~~~~~~ 455 (1108)
|. .++++|+++||++||+|++|||+++.++++|.+++++.+ +.+.|++.|-.
T Consensus 367 V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~~--~~v~l~v~R~g 420 (436)
T 4a8c_A 367 IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKP--AIIALQIVRGN 420 (436)
T ss_pred EEEeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhCC--CeEEEEEEECC
Confidence 88 489999999999999999999999999999999999833 37888877754
No 2
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=100.00 E-value=3.7e-51 Score=485.86 Aligned_cols=373 Identities=18% Similarity=0.205 Sum_probs=310.0
Q ss_pred HhCCceEEEEEeeee-----ccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec-CCeEEeEEEEEEcCCC
Q 001280 44 KVVPAVVVLRTTACR-----AFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV-NREEIPVYPIYRDPVH 117 (1108)
Q Consensus 44 ~~~~sVV~I~~~~~~-----~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~-d~~~~~a~vv~~d~~~ 117 (1108)
...+|||.|.+.... +|.......+.||||+|+ +||||||+|||. +...+.|++. |+++++|++++.|+.+
T Consensus 45 ~~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~--dG~IlTN~HVV~-~a~~i~V~~~~dg~~~~A~vv~~D~~~ 121 (539)
T 4fln_A 45 SFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIG--DGKLLTNAHCVE-HDTQVKVKRRGDDRKYVAKVLVRGVDC 121 (539)
T ss_dssp HHHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEE--TTEEEECGGGGT-TEEEEEEECTTCCCCEEEEEEEEETTT
T ss_pred ccCCCeEEEEEEecCCCCCCccccCCccceEEEEEEEE--CCEEEEChHHcC-CCCeEEEEEccCCEEEEEEEEEECCCC
Confidence 456999999988653 355667778999999998 699999999999 6778999885 8999999999999999
Q ss_pred ceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC-CeEEEEEEEEecCCCCCCCCCCcccccceEEEEeee
Q 001280 118 DFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-VSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASG 196 (1108)
Q Consensus 118 DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~-~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~ 196 (1108)
||||||++...++. .+.++.+. ..+++|++|+++|||+|.. .+++.|+||++++.....+ .....+||+|++
T Consensus 122 DLAvLkv~~~~~~~-~~~pl~~g-~~~~vGd~V~aiG~P~g~~~~tvT~GIVSa~~r~~~~~~-----~~~~~~IQtDAa 194 (539)
T 4fln_A 122 DIALLSVESEDFWK-GAEPLRLG-HLPRLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHG-----SSDLLGIQIDAA 194 (539)
T ss_dssp TEEEEEECCSSSST-TCCCCCBC-CCCCTTCEEEEEECCSSSCCCEEEEEEEEEEEEEECTTS-----CCEEEEEEESSC
T ss_pred CEEEEEEeCCcCCc-CCceeecC-CcCcCCCeEEEEEcCCCCCCCcEEeEEECcccccccCCC-----CcceeEEEEEeE
Confidence 99999998765432 23334443 4578999999999999876 5999999999988643221 112346999999
Q ss_pred cCCCCCCCceecccCcEEEEeecccCC---CCcccccChHHHHHHHHHHHhcCCccccccccccc-CCCccCeEEEEc-C
Q 001280 197 TKGGSSGSPVIDWQGRAVALNAGSKSS---SASAFFLPLERVVRALRFLQERRDCNIHNWEAVSI-PRGTLQVTFVHK-G 271 (1108)
Q Consensus 197 ~~~G~SGgPv~n~~G~vVGi~~~~~~~---~~~~falPi~~i~~~l~~l~~~~~~~~~~~~~~~v-~rg~lg~~~~~~-~ 271 (1108)
+++|||||||||.+|+||||+++.... .+++|+||++.+++++++|.+.+ .+ .|||||+.++.. .
T Consensus 195 InpGnSGGPLvn~~GeVIGIntai~~~~~~~gigfAIP~~~v~~vl~~l~~~G----------~~~~r~~LGv~~~~~~~ 264 (539)
T 4fln_A 195 INPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNG----------KYTGYPCLGVLLQKLEN 264 (539)
T ss_dssp CCTTTTTSEEECSSSCEEEEECCCC-----CCCEEEEEHHHHHHHHHHHHTTT----------SCCCCCBCCEEEEECCC
T ss_pred ecCCCccchhccCCCcEEEEEEEEecCCCCCcceecccHHHHHHHHHHHHHcC----------eEEeeeecceEEEecCC
Confidence 999999999999999999999876532 57899999999999999998766 44 499999999986 5
Q ss_pred hhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhH----------HHHHH-h
Q 001280 272 FDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLK----------LETLL-D 340 (1108)
Q Consensus 272 ~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~----------l~~~l-~ 340 (1108)
...++.|||+ ...|++| ..|.++|||+++|++||+|++|||++|.+..+ |..++ .
T Consensus 265 ~~~~~~~~l~-------------~~~Gv~V-~~V~~~spA~~al~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~ 330 (539)
T 4fln_A 265 PALRECLKVP-------------TNEGVLV-RRVEPTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQ 330 (539)
T ss_dssp HHHHHHHTCS-------------SSBCEEE-EEECTTSGGGGTCCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHT
T ss_pred HHHHHhcCCC-------------CcCceee-ecccCCChHHhCccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHc
Confidence 6677779998 6789998 69999999988999999999999999976543 56666 5
Q ss_pred cCCCCeEEEEEEECCEEEEEEE-cccccccCC-------CcccccCCeEEccCCHHHhhccCcC----------------
Q 001280 341 DGVDKNIELLIERGGISMTVNL-VQDLHSITP-------DYFLEVSGAVIHPLSYQQARNFRFP---------------- 396 (1108)
Q Consensus 341 ~~~g~~v~l~V~R~g~~~~~~v-~~~~~~~~~-------~~~~~~~G~~~~~l~~q~~~~~~~~---------------- 396 (1108)
..+|++|+|+|.|+|+++++++ +..++...+ ..+..++|++|+++++++++.++..
T Consensus 331 ~~~Gd~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~~ 410 (539)
T 4fln_A 331 KFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVAR 410 (539)
T ss_dssp SCTTCEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCCS
T ss_pred CCCCCEEEEEEEECCEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHHHhhcccccCceeeehhhhhhhc
Confidence 6899999999999999999999 988765433 3467889999999999887655432
Q ss_pred ---CCeEEEE--CCCChhHHcCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCCeEEEEE
Q 001280 397 ---CGLVYVA--EPGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEY 451 (1108)
Q Consensus 397 ---~~gv~v~--~~~~~a~~aGl~~Gd~I~~Vng~~v~~l~~~~~~i~~~~~~~~v~l~~ 451 (1108)
..||.++ .|++++..+|++.||+|++|||++|.|+++|.++|++.+ ++++.|++
T Consensus 411 ~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~l~~~l~~~k-~~~l~~~~ 469 (539)
T 4fln_A 411 FRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCK-DKYLVFEF 469 (539)
T ss_dssp STTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHHHHHHHHTCC-SSEEEEEE
T ss_pred cCCceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHHHHHHHHHHcC-CCeEEEEE
Confidence 2478888 499999999999999999999999999999999999975 46666654
No 3
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=100.00 E-value=6.3e-52 Score=490.42 Aligned_cols=380 Identities=20% Similarity=0.323 Sum_probs=311.5
Q ss_pred hhHHHHHHHhCCceEEEEEeeee-----------------ccCCC---------CCCccEEEEEEEeCCCcEEEEccccc
Q 001280 36 DDWRKALNKVVPAVVVLRTTACR-----------------AFDTE---------AAGASYATGFVVDKRRGIILTNRHVV 89 (1108)
Q Consensus 36 ~~~~~~~~~~~~sVV~I~~~~~~-----------------~~d~~---------~~~~~~GSGfvV~~~~G~ILTn~HVV 89 (1108)
.++.++++++.||||+|.+.... .|.+. ....+.||||+|++++||||||+|||
T Consensus 19 ~~~~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTn~HVv 98 (451)
T 3pv2_A 19 PSMAPVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHVI 98 (451)
T ss_dssp CCSHHHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEETTTTEEEECHHHH
T ss_pred CCHHHHHHHhCCcEEEEEEEEeecccCCCccccccchhHHhhcccccccccccCcccceeEEEEEEECCCCEEEEChHHh
Confidence 47899999999999999987521 01111 12357899999998569999999999
Q ss_pred CCCCeEEEEEecCCeEEeEEEEEEcCCCceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC-----CeEE
Q 001280 90 KPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSIL 164 (1108)
Q Consensus 90 ~~~~~~~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~-----~si~ 164 (1108)
. +...+.|++.|++.++|++++.|+.+||||||+++..++++.+.. +..+++|++|+++|||.|.. .+++
T Consensus 99 ~-~a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~l~~~~l~~----s~~~~~G~~V~aiG~P~G~~~~~~~~~vt 173 (451)
T 3pv2_A 99 R-NASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGD----SDKLEVGDFVVAIGNPFGLNSFGNSQSAT 173 (451)
T ss_dssp T-TEEEEEEECTTSCEEECEEEEEETTTTEEEEECCCSSCCCCCBCC----GGGCCTTCEEEEEECCCCC-----CCEEE
T ss_pred C-CCCEEEEEEcCCCEEEEEEEecCcCCcEEEEEEcCcCCceeEecC----cccCCCCCEEEEEECCCCccccccCCcee
Confidence 9 677899999999999999999999999999999887666666654 67899999999999999988 8999
Q ss_pred EEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHH
Q 001280 165 AGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALR 240 (1108)
Q Consensus 165 ~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~ 240 (1108)
.|+|+++.+.. +....|.+ +||+++++++|+|||||||.+|+||||+++.... .+++|+||++.++++++
T Consensus 174 ~Givs~~~r~~--~~~~~~~~----~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~ 247 (451)
T 3pv2_A 174 FGIVSALKRSD--LNIEGVEN----FIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQ 247 (451)
T ss_dssp EEEEEEEC------------C----CEEESSCCCGGGTTSEEEETTCCEEEEEECCC------CCCEEEEEHHHHHHHHH
T ss_pred EEEEeeccccc--cCCCCcce----EEEEecccCCCCCcCcccCCCCeEEEEEeEeecCCCCccceeeeehhHHHHHHHH
Confidence 99999998762 22223333 5999999999999999999999999999887642 57899999999999999
Q ss_pred HHHhcCCcccccccccccCCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCC-CceEEEEEecCCCcccc-CCCCC
Q 001280 241 FLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGE-TGLLVVDSVVPGGPAHL-RLEPG 318 (1108)
Q Consensus 241 ~l~~~~~~~~~~~~~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~-~G~lVv~~V~~~spA~~-gL~~G 318 (1108)
+|.+++ .+.|||||+.++.++.+.++.|||+ .. .|++| ..|.++|||++ ||++|
T Consensus 248 ~l~~~g----------~v~r~~lGv~~~~~~~~~a~~~gl~-------------~~~~G~~V-~~V~~~spA~~aGL~~G 303 (451)
T 3pv2_A 248 QIIKFG----------SIHRGLMGIFVQHLTPELAQAMGYP-------------EDFQGALV-SQVNPNSPAELAGLKAG 303 (451)
T ss_dssp HHHHHS----------SCCCCBCCEEEEECCHHHHHHTTSC-------------TTCCCEEE-EEECTTSHHHHHTCCTT
T ss_pred HHHhcC----------CcccccccceEEeccHHHHHhcCCC-------------cCCceEEE-EecCCCChHHHcCCCCC
Confidence 999988 7899999999999999999999998 44 78888 69999999999 99999
Q ss_pred CEEEEECCEEeCChhHHHHHHh-cCCCCeEEEEEEECCEEEEEEE-cccccccCC---CcccccCCeEEccCCHHHhhcc
Q 001280 319 DVLVRVNGEVITQFLKLETLLD-DGVDKNIELLIERGGISMTVNL-VQDLHSITP---DYFLEVSGAVIHPLSYQQARNF 393 (1108)
Q Consensus 319 D~Il~VnG~~v~~~~~l~~~l~-~~~g~~v~l~V~R~g~~~~~~v-~~~~~~~~~---~~~~~~~G~~~~~l~~q~~~~~ 393 (1108)
|+|++|||++|.+|.++..++. ..+|++++|+|.|+|+.+++++ +..++.... .......|+.+.++.++....
T Consensus 304 DvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~- 382 (451)
T 3pv2_A 304 DIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPH- 382 (451)
T ss_dssp CEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCHHHHHHHHHHHSTTTTTEEEEEEEEECTTS-
T ss_pred CEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccCCccccccccccccccccccccCChhHhcc-
Confidence 9999999999999999998885 5889999999999999999998 766542111 112245677777665432111
Q ss_pred CcCCCeEEEE--CCCChhHHcCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCCeEEEEEeee
Q 001280 394 RFPCGLVYVA--EPGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSY 454 (1108)
Q Consensus 394 ~~~~~gv~v~--~~~~~a~~aGl~~Gd~I~~Vng~~v~~l~~~~~~i~~~~~~~~v~l~~~~~ 454 (1108)
. ...|++|. .++|+|+++||++||+|++|||+++.++++|.+++++ .++.+.|++.|-
T Consensus 383 ~-~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~--~~~~v~l~v~R~ 442 (451)
T 3pv2_A 383 G-NVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE--KKKELLVQVLRG 442 (451)
T ss_dssp C-EEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTTS--SCSCEEEEEEET
T ss_pred c-CCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHhc--CCCeEEEEEEEC
Confidence 1 12588888 5899999999999999999999999999999999998 456677777653
No 4
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=100.00 E-value=5.6e-49 Score=464.52 Aligned_cols=397 Identities=19% Similarity=0.259 Sum_probs=314.5
Q ss_pred cccccccccEEEEEEEcCccc----------ccCC------cccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEE
Q 001280 619 FAESVIEPTLVMFEVHVPPSC----------MIDG------VHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLS 682 (1108)
Q Consensus 619 ~~~~~~~~S~V~V~~~~~~~~----------~~dg------~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~ 682 (1108)
.+.+++.||||.|.+...... .++. .....+.||||||+. ++|||||| +||+.++.++.|+
T Consensus 17 ~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~--~~G~IlTn-~Hvv~~a~~i~V~ 93 (436)
T 4a8c_A 17 PMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINA--SKGYVLTN-NHVINQAQKISIQ 93 (436)
T ss_pred HHHHhhCCcEEEEEEEEeecccccCcchhhhhcccccccccCCcCceEEEEEEEEC--CCCEEEEC-HHHhCCCCEEEEE
Confidence 378999999999988753210 1111 112357899999992 34999999 5566788899999
Q ss_pred eecCCeEEeEEEEEeeCCCcEEEEEEC-CCCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEecccc
Q 001280 683 FAAFPIEIPGEVVFLHPVHNFALIAYD-PSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCA 761 (1108)
Q Consensus 683 ~~~~~~~~~a~vv~~dp~~dlAilk~d-~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~ 761 (1108)
+.+ ++.++|++++.|+.+||||||++ +..+++ ++|+++..++.||+|+++|||+++......+.|+
T Consensus 94 ~~d-g~~~~a~vv~~d~~~DlAllkv~~~~~l~~--------~~l~~s~~~~~G~~v~aiG~P~g~~~~vt~G~vs---- 160 (436)
T 4a8c_A 94 LND-GREFDAKLIGSDDQSDIALLQIQNPSKLTQ--------IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVS---- 160 (436)
T ss_pred eCC-CCEEEEEEEEEcCCCCEEEEEecCCCCCce--------EeccCcccCCCCCEEEEEEcCCCCCccEEEEEEe----
Confidence 998 99999999999999999999995 445554 8999877899999999999999986544445554
Q ss_pred ccccCCCCCCcc-ccccceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHH
Q 001280 762 ALNISSADCPRY-RAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLD 839 (1108)
Q Consensus 762 ~~~i~~~~~~~y-~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~ 839 (1108)
+..+..+ .....++||+|+++++ +|||||+|.+|+|+||+++.... +....++.||||++.++++++
T Consensus 161 -----~~~r~~~~~~~~~~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~------~~~~~g~gfaIP~~~~~~~~~ 229 (436)
T 4a8c_A 161 -----ALGRSGLNLEGLENFIQTDASINRGNAGGALLNLNGELIGINTAILAP------GGGSVGIGFAIPSNMARTLAQ 229 (436)
T ss_pred -----eecccccCCCCccCEEEEcCccCCCCCcCcccCCCCEEEEEEeeeccC------CCCceeEEEEEehHHHHHHHH
Confidence 3322211 1123478999999965 79999999999999999986543 223456678999999999999
Q ss_pred HHHcCCCCCcccccCcccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhHh-ccC
Q 001280 840 KIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQ 918 (1108)
Q Consensus 840 ~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A~~a-L~~ 918 (1108)
+|+++++ +.|+ |||+.++.++...++.+|++.. .+++|..|.++|||+++ |+.
T Consensus 230 ~l~~~g~--------v~r~-----~lGv~~~~~~~~~a~~~gl~~~-------------~G~~V~~V~~~spA~~aGL~~ 283 (436)
T 4a8c_A 230 QLIDFGE--------IKRG-----LLGIKGTEMSADIAKAFNLDVQ-------------RGAFVSEVLPGSGSAKAGVKA 283 (436)
T ss_pred HHHhccc--------cccc-----cCceEecccCHHHHHHhCCCCC-------------cceEEEEECCCChHHHCCCCC
Confidence 9999876 7777 9999999999999999998764 67889999999999999 999
Q ss_pred CCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccCCCCCcceeeeccccccCCchhhhh
Q 001280 919 GDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGNGTTRVINWCGCIVQDPHPAVRA 998 (1108)
Q Consensus 919 GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~~~~t~~~~~~~G~~~~~p~~~vr~ 998 (1108)
||+|++|||++|.++.++..++....++ +++.++|.|+|+.+++++++...............|+....+...
T Consensus 284 GD~I~~vnG~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~--- 356 (436)
T 4a8c_A 284 GDIITSLNGKPLNSFAELRSRIATTEPG----TKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDG--- 356 (436)
T ss_pred CCEEEEECCEECCCHHHHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEECCCCcccccccccccCceeeecccc---
Confidence 9999999999999999999998766665 899999999999999999988775332211111123322222100
Q ss_pred cCCCCCCCCeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEeCC
Q 001280 999 LGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQDL 1078 (1108)
Q Consensus 999 ~~~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~d~ 1078 (1108)
. ......|++|.+|.++|||+++||++||+|++|||+++.++++|.+++++. +..+.|+ +.|+|+.+.+++.+.+
T Consensus 357 -~-~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~--~~~v~l~-v~R~g~~~~~~~~~~~ 431 (436)
T 4a8c_A 357 -Q-LKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAK--PAIIALQ-IVRGNESIYLLMRLEH 431 (436)
T ss_pred -c-ccCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhC--CCeEEEE-EEECCEEEEEEEEecc
Confidence 0 111124899999999999999999999999999999999999999999983 3479998 8999999999998865
Q ss_pred cc
Q 001280 1079 HY 1080 (1108)
Q Consensus 1079 ~y 1080 (1108)
++
T Consensus 432 ~~ 433 (436)
T 4a8c_A 432 HH 433 (436)
T ss_pred cC
Confidence 54
No 5
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=100.00 E-value=3.7e-48 Score=460.17 Aligned_cols=392 Identities=15% Similarity=0.108 Sum_probs=306.8
Q ss_pred cccccEEEEEEEcCccccc---CCcccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEeeC
Q 001280 623 VIEPTLVMFEVHVPPSCMI---DGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHP 699 (1108)
Q Consensus 623 ~~~~S~V~V~~~~~~~~~~---dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~dp 699 (1108)
...+|||.|.+......+. .......+.||||||+ +|||||| +||+.++..|.|++..+++.++|+|++.|+
T Consensus 45 ~~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~----dG~IlTN-~HVV~~a~~i~V~~~~dg~~~~A~vv~~D~ 119 (539)
T 4fln_A 45 SFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIG----DGKLLTN-AHCVEHDTQVKVKRRGDDRKYVAKVLVRGV 119 (539)
T ss_dssp HHHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEE----TTEEEEC-GGGGTTEEEEEEECTTCCCCEEEEEEEEET
T ss_pred ccCCCeEEEEEEecCCCCCCccccCCccceEEEEEEEE----CCEEEEC-hHHcCCCCeEEEEEccCCEEEEEEEEEECC
Confidence 4568999998876421111 1223445789999998 6999999 667788899999996339999999999999
Q ss_pred CCcEEEEEECCCCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccc--ccc
Q 001280 700 VHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR--AMN 777 (1108)
Q Consensus 700 ~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~--~~~ 777 (1108)
.+||||||++...++ ..+.++.++++ .+.||+|++||||+++.. .+|| .|++++..+..+. ...
T Consensus 120 ~~DLAvLkv~~~~~~----~~~~pl~~g~~--~~vGd~V~aiG~P~g~~~----~tvT----~GIVSa~~r~~~~~~~~~ 185 (539)
T 4fln_A 120 DCDIALLSVESEDFW----KGAEPLRLGHL--PRLQDSVTVVGYPLGGDT----ISVT----KGVVSRIEVTSYAHGSSD 185 (539)
T ss_dssp TTTEEEEEECCSSSS----TTCCCCCBCCC--CCTTCEEEEEECCSSSCC----CEEE----EEEEEEEEEEECTTSCCE
T ss_pred CCCEEEEEEeCCcCC----cCCceeecCCc--CcCCCeEEEEEcCCCCCC----CcEE----eEEECcccccccCCCCcc
Confidence 999999999877554 24455788876 488999999999998752 2444 4444443332221 123
Q ss_pred ceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcCCCCCcccccCcc
Q 001280 778 MEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGVK 856 (1108)
Q Consensus 778 ~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~~~~~~~~~~~v~ 856 (1108)
..+||+|+++++ ||||||+|.+|+||||+++.... ....+. .||||++.+++++++|++.|+ +.
T Consensus 186 ~~~IQtDAaInpGnSGGPLvn~~GeVIGIntai~~~-----~~~~gi--gfAIP~~~v~~vl~~l~~~G~--------~~ 250 (539)
T 4fln_A 186 LLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRS-----EETENI--GYVIPTTVVSHFLTDYERNGK--------YT 250 (539)
T ss_dssp EEEEEESSCCCTTTTTSEEECSSSCEEEEECCCC----------CCC--EEEEEHHHHHHHHHHHHTTTS--------CC
T ss_pred eeEEEEEeEecCCCccchhccCCCcEEEEEEEEecC-----CCCCcc--eecccHHHHHHHHHHHHHcCe--------EE
Confidence 467999999966 79999999999999999885443 123444 488999999999999988765 33
Q ss_pred -cCCCceeeeeeEEEEc-ChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhHhccCCCEEEEECCEEcCChh
Q 001280 857 -RPMPLVRILEVELYPT-LLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENMLEQGDMMLAINKQPVTCFH 934 (1108)
Q Consensus 857 -r~~p~~~~Lgv~~~~i-~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A~~aL~~GDiIlsVnG~~V~~~~ 934 (1108)
|+ |||+.++.+ ....++.+|++.. +|++|.+|.++|||+++|+.||+|++|||++|.+..
T Consensus 251 ~r~-----~LGv~~~~~~~~~~~~~~~l~~~-------------~Gv~V~~V~~~spA~~al~~GDvI~~idg~~V~~~g 312 (539)
T 4fln_A 251 GYP-----CLGVLLQKLENPALRECLKVPTN-------------EGVLVRRVEPTSDASKVLKEGDVIVSFDDLHVGCEG 312 (539)
T ss_dssp CCC-----BCCEEEEECCCHHHHHHHTCSSS-------------BCEEEEEECTTSGGGGTCCTTCEEEEETTEECBSSS
T ss_pred eee-----ecceEEEecCCHHHHHhcCCCCc-------------CceeeecccCCChHHhCccCCCEEEEECCEEeCcCC
Confidence 66 999999987 5667777888755 789999999999999889999999999999997755
Q ss_pred H----------HHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccCCC-------CCcceeeeccccccCCchhhh
Q 001280 935 D----------IENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGN-------GTTRVINWCGCIVQDPHPAVR 997 (1108)
Q Consensus 935 d----------l~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~~~-------~t~~~~~~~G~~~~~p~~~vr 997 (1108)
+ |..++....+| ++++++|+|+|++++++|++...+.. ...++..++|+.++++....+
T Consensus 313 ~~~~~~~~~~~l~~~v~~~~~G----d~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~ 388 (539)
T 4fln_A 313 TVPFRSSERIAFRYLISQKFAG----DIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLI 388 (539)
T ss_dssp EEECSTTCEEETHHHHHTSCTT----CEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHH
T ss_pred eeccccchhHHHHHHHHcCCCC----CEEEEEEEECCEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHH
Confidence 4 66777777787 99999999999999999999877532 223456788999988876654
Q ss_pred hc-C----------------CCCCCCCeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEE
Q 001280 998 AL-G----------------FLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRV 1060 (1108)
Q Consensus 998 ~~-~----------------~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l 1060 (1108)
+. . ....+.++|+|++|.++|+|.+||+++||.|++|||++|.++++|.+++++.+ +++++|
T Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~l~~~l~~~k-~~~l~~ 467 (539)
T 4fln_A 389 EEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCK-DKYLVF 467 (539)
T ss_dssp TTSCSSSSCHHHHHHHHHCCCSSTTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHHHHHHHHTCC-SSEEEE
T ss_pred HhhcccccCceeeehhhhhhhccCCceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHHHHHHHHHHcC-CCeEEE
Confidence 31 1 01122468999999999999999999999999999999999999999999965 899998
Q ss_pred EEEEeCCeEEEEE
Q 001280 1061 RTVHLNGKPRVLT 1073 (1108)
Q Consensus 1061 ~~v~rdg~~~~~~ 1073 (1108)
+ ..+|+..++.
T Consensus 468 ~--~~~~~~ivL~ 478 (539)
T 4fln_A 468 E--FEDNYVAVLE 478 (539)
T ss_dssp E--ETTSCEEEEE
T ss_pred E--ECCCEEEEEE
Confidence 8 3467766654
No 6
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=100.00 E-value=5.3e-49 Score=465.44 Aligned_cols=399 Identities=18% Similarity=0.167 Sum_probs=306.1
Q ss_pred cccccccccEEEEEEEcCccc------------ccCCc------------ccceeeEEEEEEEeeCCceEEEEeCceecC
Q 001280 619 FAESVIEPTLVMFEVHVPPSC------------MIDGV------------HSQHFFGTGVIIYHSQSMGLVVVDKNTVAI 674 (1108)
Q Consensus 619 ~~~~~~~~S~V~V~~~~~~~~------------~~dg~------------~~~~~~GsG~iId~~~~~G~IlTnr~~V~~ 674 (1108)
.+.+++.||||.|.+...... .+..+ ....+.||||||+ .++|||||| +||+.
T Consensus 23 ~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~--~~~G~IlTn-~HVv~ 99 (451)
T 3pv2_A 23 PVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIID--PNNGVIITN-DHVIR 99 (451)
T ss_dssp HHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEE--TTTTEEEEC-HHHHT
T ss_pred HHHHHhCCcEEEEEEEEeecccCCCccccccchhHHhhcccccccccccCcccceeEEEEEEE--CCCCEEEEC-hHHhC
Confidence 378899999999988642100 01111 1234679999999 235999999 55777
Q ss_pred CCceEEEEeecCCeEEeEEEEEeeCCCcEEEEEECCCCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeee
Q 001280 675 SASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKS 754 (1108)
Q Consensus 675 ~~~~i~V~~~~~~~~~~a~vv~~dp~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~ 754 (1108)
++.++.|++.+ ++.++|++++.|+.+||||||+++..+++ ++|+++..++.||+|+++|||++........
T Consensus 100 ~a~~i~V~~~d-g~~~~a~vv~~d~~~DlAlLkv~~~~l~~--------~~l~~s~~~~~G~~V~aiG~P~G~~~~~~~~ 170 (451)
T 3pv2_A 100 NASLITVTLQD-GRRLKARLIGGDSETDLAVLKIDAKNLKS--------LVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQ 170 (451)
T ss_dssp TEEEEEEECTT-SCEEECEEEEEETTTTEEEEECCCSSCCC--------CCBCCGGGCCTTCEEEEEECCCCC-----CC
T ss_pred CCCEEEEEEcC-CCEEEEEEEecCcCCcEEEEEEcCcCCce--------eEecCcccCCCCCEEEEEECCCCccccccCC
Confidence 88899999998 99999999999999999999998877765 8999887899999999999999986111113
Q ss_pred eEeccccccccCCCCCCccc-cccceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHH
Q 001280 755 IVTNPCAALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIY 832 (1108)
Q Consensus 755 ~Vt~~~~~~~i~~~~~~~y~-~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~ 832 (1108)
+++ .|++++..+..+. .....+||+|+++++ +|||||+|.+|+||||+++.... +....++.||||++
T Consensus 171 ~vt----~Givs~~~r~~~~~~~~~~~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~------~~~~~g~gfaIP~~ 240 (451)
T 3pv2_A 171 SAT----FGIVSALKRSDLNIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSP------YGGNVGIGFAIPIN 240 (451)
T ss_dssp EEE----EEEEEEEC----------CCEEESSCCCGGGTTSEEEETTCCEEEEEECCC------------CCCEEEEEHH
T ss_pred cee----EEEEeeccccccCCCCcceEEEEecccCCCCCcCcccCCCCeEEEEEeEeecC------CCCccceeeeehhH
Confidence 344 4444443332111 123468999999965 79999999999999999885443 12234566899999
Q ss_pred HHHHHHHHHHcCCCCCcccccCcccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHH
Q 001280 833 TISRVLDKIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKA 912 (1108)
Q Consensus 833 ~i~~vl~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A 912 (1108)
.+++++++|+++++ +.|+ |||+.++.++...++.+|++.. .++++|..|.++|||
T Consensus 241 ~~~~~~~~l~~~g~--------v~r~-----~lGv~~~~~~~~~a~~~gl~~~------------~~G~~V~~V~~~spA 295 (451)
T 3pv2_A 241 MVKDVAQQIIKFGS--------IHRG-----LMGIFVQHLTPELAQAMGYPED------------FQGALVSQVNPNSPA 295 (451)
T ss_dssp HHHHHHHHHHHHSS--------CCCC-----BCCEEEEECCHHHHHHTTSCTT------------CCCEEEEEECTTSHH
T ss_pred HHHHHHHHHHhcCC--------cccc-----cccceEEeccHHHHHhcCCCcC------------CceEEEEecCCCChH
Confidence 99999999999876 7777 9999999999999999998743 257889999999999
Q ss_pred hHh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccCCCCC---cceeeecccc
Q 001280 913 ENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGNGT---TRVINWCGCI 988 (1108)
Q Consensus 913 ~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~~~~t---~~~~~~~G~~ 988 (1108)
+++ |+.||+|++|||++|.++.++..++....+| +++.++|.|+|+++++++++........ .....+.|+.
T Consensus 296 ~~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g----~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~~~~G~~ 371 (451)
T 3pv2_A 296 ELAGLKAGDIITQINDTKITQATQVKTTISLLRVG----STVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLA 371 (451)
T ss_dssp HHHTCCTTCEEEEETTEECCSHHHHHHHHHTSCTT----CEEEEEEEETTEEEEEEEECBCHHHHHHHHHHHSTTTTTEE
T ss_pred HHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEEccCCccccccccccccccccc
Confidence 999 9999999999999999999999999766776 8999999999999999999876542110 0011234554
Q ss_pred ccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 989 VQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 989 ~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+.......+. .. ...|++|.+|.++|||+++||++||+|++|||+++.++++|.+++++ .++.+.|. +.|+|+
T Consensus 372 l~~~~~~~~~---~~-~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~--~~~~v~l~-v~R~g~ 444 (451)
T 3pv2_A 372 LRAFEQESPP---HG-NVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE--KKKELLVQ-VLRGPG 444 (451)
T ss_dssp EEEEEEECTT---SC-EEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTTS--SCSCEEEE-EEETTE
T ss_pred cccCChhHhc---cc-CCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHhc--CCCeEEEE-EEECCE
Confidence 4432211111 11 12489999999999999999999999999999999999999999997 47889998 899999
Q ss_pred EEEEEEE
Q 001280 1069 PRVLTLK 1075 (1108)
Q Consensus 1069 ~~~~~lk 1075 (1108)
.++++++
T Consensus 445 ~~~v~l~ 451 (451)
T 3pv2_A 445 SMYLLVI 451 (451)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9888763
No 7
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=100.00 E-value=9e-50 Score=471.63 Aligned_cols=373 Identities=20% Similarity=0.345 Sum_probs=249.9
Q ss_pred chhHHHHHHHhCCceEEEEEeeee-------------ccCCCC----------------------------CCccEEEEE
Q 001280 35 ADDWRKALNKVVPAVVVLRTTACR-------------AFDTEA----------------------------AGASYATGF 73 (1108)
Q Consensus 35 ~~~~~~~~~~~~~sVV~I~~~~~~-------------~~d~~~----------------------------~~~~~GSGf 73 (1108)
..+|..+++++.||||+|.+.... .|+... ...+.||||
T Consensus 12 ~~~~~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSG~ 91 (448)
T 1ky9_A 12 MPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGV 91 (448)
T ss_dssp CCCSHHHHHHHGGGEEEEEEEEEEEECCCCSSCCTTCCCC---------------------------CEEEEEEEEEEEE
T ss_pred CccHHHHHHHhCCcEEEEEEEEEecccCCccchhhhhhhccccccccccccccccccccccccccccccccccccEEEEE
Confidence 347999999999999999986532 121110 112679999
Q ss_pred EEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEcCCCceEEEEECC-CCcccccccCCCCCCcccCCCCEEEE
Q 001280 74 VVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRV 152 (1108)
Q Consensus 74 vV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d~-~~~~~~~~~~l~l~~~~~~~G~~V~~ 152 (1108)
+|++++||||||+|||. +...+.|++.|++.++|++++.|+.+||||||++. ..++++++++ +..+++|++|++
T Consensus 92 ii~~~~g~IlTn~HVv~-~a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~~~~~~~~~~l~~----s~~~~~G~~V~a 166 (448)
T 1ky9_A 92 IIDADKGYVVTNNHVVD-NATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMAD----SDALRVGDYTVA 166 (448)
T ss_dssp EEETTTTEEEEEHHHHT-TEEEEEEEETTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTCEEEE
T ss_pred EEECCCCEEEEChHHhC-CCCEEEEEECCCCEEEEEEEEEcCCCCEEEEEecCCCCCceEEecc----cccCCCCCEEEE
Confidence 99984599999999999 56789999999999999999999999999999974 4555555554 578999999999
Q ss_pred EecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccCC----CCccc
Q 001280 153 VGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAF 228 (1108)
Q Consensus 153 iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~f 228 (1108)
+|||++...+++.|+|+++.|.. +....+.+ +||+|+++++|+|||||||.+|+||||+++.... .+++|
T Consensus 167 iG~P~g~~~tvt~Givs~~~r~~--~~~~~~~~----~iqtda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~~g~gf 240 (448)
T 1ky9_A 167 IGNPFGLGETVTSGIVSALGRSG--LNAENYEN----FIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGF 240 (448)
T ss_dssp EECTTSSSCEEEEEEEEEESSCC-------CCC----CEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSEE
T ss_pred EECCCCCCCeEEeEEEeeccccc--cCCCCccC----EEEEcCCCCCCCCCCeeECCCCEEEEEEEEeecCCCCccceee
Confidence 99999999999999999998761 11223333 5999999999999999999999999999876542 46899
Q ss_pred ccChHHHHHHHHHHHhcCCcccccccccccCCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCC
Q 001280 229 FLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPG 308 (1108)
Q Consensus 229 alPi~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~ 308 (1108)
+||++.+++++++|.+++ .+.|||||+.++.++.+.++.|||+ ...|++| ..|.++
T Consensus 241 aIP~~~~~~~~~~l~~~g----------~v~~~~LGv~~~~~~~~~a~~lgl~-------------~~~G~~V-~~V~~g 296 (448)
T 1ky9_A 241 AIPSNMVKNLTSQMVEYG----------QVKRGELGIMGTELNSELAKAMKVD-------------AQRGAFV-SQVLPN 296 (448)
T ss_dssp EEEHHHHHHHHHHHHHHS----------SCCBCCCCCSCCCTTSHHHHTSCCT-------------TCCSEEC-CCCTTC
T ss_pred eeecccchhhHHHHhhhc----------ccceeccccccccccHHHHHHhCCC-------------CCCceEE-EEeccC
Confidence 999999999999999988 7899999999999999999999997 5688887 699999
Q ss_pred Ccccc-CCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEE-cccccccC---CCcccccCCeEE
Q 001280 309 GPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNL-VQDLHSIT---PDYFLEVSGAVI 382 (1108)
Q Consensus 309 spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~v-~~~~~~~~---~~~~~~~~G~~~ 382 (1108)
|||++ ||++||+|++|||++|.++.++..++.. .+|++++|+|.|+|+.+++++ +...+... ........|+.+
T Consensus 297 spA~~AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~~~~~~~~~G~~l 376 (448)
T 1ky9_A 297 SSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEM 376 (448)
T ss_dssp SSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC-----------------------
T ss_pred CHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEecCCCcccccccccccccceEe
Confidence 99999 9999999999999999999999988854 789999999999999888887 65433211 111223446555
Q ss_pred ccCCHHHhhccCcCCCeEEEE--CCCChhHHcCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCCeEEEEEee
Q 001280 383 HPLSYQQARNFRFPCGLVYVA--EPGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSS 453 (1108)
Q Consensus 383 ~~l~~q~~~~~~~~~~gv~v~--~~~~~a~~aGl~~Gd~I~~Vng~~v~~l~~~~~~i~~~~~~~~v~l~~~~ 453 (1108)
.++. ...|++|. .++++|+++||++||+|++|||+++.++++|.+++++.++ .+.|++.|
T Consensus 377 ~~~~---------~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~l~~~l~~~~~--~v~l~v~R 438 (448)
T 1ky9_A 377 SNKG---------KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPS--VLALNIQR 438 (448)
T ss_dssp -------------------------------------------------------------------------
T ss_pred eccC---------CCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHcCCC--eEEEEEEE
Confidence 5432 12578887 4899999999999999999999999999999999987432 45555544
No 8
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=100.00 E-value=7.3e-45 Score=415.90 Aligned_cols=303 Identities=21% Similarity=0.349 Sum_probs=257.5
Q ss_pred cCchhHHHHHHHhCCceEEEEEeeee------------ccCC------CCCCccEEEEEEEeCCCcEEEEcccccCCCCe
Q 001280 33 ATADDWRKALNKVVPAVVVLRTTACR------------AFDT------EAAGASYATGFVVDKRRGIILTNRHVVKPGPV 94 (1108)
Q Consensus 33 ~~~~~~~~~~~~~~~sVV~I~~~~~~------------~~d~------~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~ 94 (1108)
+..++|.++++++.||||+|.+.... .|+. .....+.||||+|++++||||||+|||. +..
T Consensus 10 ~~~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHVv~-~~~ 88 (345)
T 3stj_A 10 APLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-QAQ 88 (345)
T ss_dssp -CCCBSHHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEETTTTEEEECHHHHT-TEE
T ss_pred CCCCCHHHHHHHhCCcEEEEEEEEeecccccCchhhhhhcccccccccCcccceeEEEEEEECCCCEEEEChHHhC-CCC
Confidence 44468999999999999999987532 1221 1223688999999984499999999999 677
Q ss_pred EEEEEecCCeEEeEEEEEEcCCCceEEEEEC-CCCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecC
Q 001280 95 VAEAMFVNREEIPVYPIYRDPVHDFGFFRYD-PSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDR 173 (1108)
Q Consensus 95 ~~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d-~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~ 173 (1108)
.+.+++.|++.++|++++.|+.+||||||++ +..++++.+.. +..+++|++|+++|||.+...+++.|+|++..+
T Consensus 89 ~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~l~~----s~~~~~G~~V~aiG~p~g~~~~vt~G~Vs~~~~ 164 (345)
T 3stj_A 89 KISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR 164 (345)
T ss_dssp EEEEECTTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTBEEEEEECGGGCSCEEEEEEEEEEEE
T ss_pred EEEEEeCCCcEEEEEEEEEcCCCCEEEEEEcccCCCceEeecC----cccCCCCCEEEEEECCCCCCCcEEeeEEeeecc
Confidence 8999999999999999999999999999996 44555555543 678999999999999999999999999999987
Q ss_pred CCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHHHhcCCcc
Q 001280 174 DAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERRDCN 249 (1108)
Q Consensus 174 ~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l~~~~~~~ 249 (1108)
.. +....+. .+||+++++++|+|||||||.+|+||||+++.... .+++|+||++.+++++++|.+.+
T Consensus 165 ~~--~~~~~~~----~~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g--- 235 (345)
T 3stj_A 165 SG--LNLEGLE----NFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG--- 235 (345)
T ss_dssp CC--SSSSSSC----CEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHS---
T ss_pred cc--cCCCCcc----CEEEEecccCCCcCccceeCCCCEEEEEEeccccCCCCcceeEEEEehHHHHHHHHHHHhcc---
Confidence 62 2222333 36999999999999999999999999999876542 47899999999999999999888
Q ss_pred cccccccccCCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEE
Q 001280 250 IHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEV 328 (1108)
Q Consensus 250 ~~~~~~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~ 328 (1108)
.+.|+|||+.++.++.+.++.|||+ ...|++| ..|.++|||++ ||++||+|++|||++
T Consensus 236 -------~v~~~~lGv~~~~~~~~~a~~~gl~-------------~~~G~~V-~~V~~~spA~~aGL~~GDvI~~ing~~ 294 (345)
T 3stj_A 236 -------EIKRGLLGIKGTEMSADIAKAFNLD-------------VQRGAFV-SEVLPGSGSAKAGVKAGDIITSLNGKP 294 (345)
T ss_dssp -------SCCCEECCEEEEECCHHHHHHTTCS-------------CCSSEEE-EEECTTSHHHHHTCCTTCEECEETTEE
T ss_pred -------cccccccceeeEeecHHHHHhcCCC-------------CCceEEE-EEeccCChHHHcCCCCCCEEEEECCEE
Confidence 7899999999999999999999998 5689888 69999999999 999999999999999
Q ss_pred eCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEE-cccccccC
Q 001280 329 ITQFLKLETLLDD-GVDKNIELLIERGGISMTVNL-VQDLHSIT 370 (1108)
Q Consensus 329 v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~v-~~~~~~~~ 370 (1108)
|.++.++..++.. .+|++++|+|.|+|+.+++++ +..++...
T Consensus 295 v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~ 338 (345)
T 3stj_A 295 LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSL 338 (345)
T ss_dssp CSCHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEEC----
T ss_pred CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEcccCCCC
Confidence 9999999998854 689999999999999999999 87776443
No 9
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=100.00 E-value=1.4e-46 Score=444.29 Aligned_cols=356 Identities=19% Similarity=0.274 Sum_probs=218.3
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEeeCCCcEEEEEEC-CCCCCcccccceeccccC
Q 001280 649 FFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYD-PSSLGVAGASVVRAAELL 727 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~dp~~dlAilk~d-~~~l~~~~~~~v~~~~l~ 727 (1108)
..||||||+ .+.|||||| +||+.++..+.|++.+ +..++|++++.|+.+||||||++ +..+++ ++|+
T Consensus 86 ~~GSG~ii~--~~~g~IlTn-~HVv~~a~~i~V~~~d-g~~~~a~vv~~d~~~DlAvlkv~~~~~~~~--------~~l~ 153 (448)
T 1ky9_A 86 ALGSGVIID--ADKGYVVTN-NHVVDNATVIKVQLSD-GRKFDAKMVGKDPRSDIALIQIQNPKNLTA--------IKMA 153 (448)
T ss_dssp EEEEEEEEE--TTTTEEEEE-HHHHTTEEEEEEEETT-SCEEEEEEEEEETTTTEEEEEESSCCSCCC--------CCBC
T ss_pred cEEEEEEEE--CCCCEEEEC-hHHhCCCCEEEEEECC-CCEEEEEEEEEcCCCCEEEEEecCCCCCce--------EEec
Confidence 679999999 234999999 5567888899999998 99999999999999999999997 445655 8999
Q ss_pred CCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccc-cccceEEEEecccCC-CCCceEEcCCeeEEEE
Q 001280 728 PEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGRVQAI 805 (1108)
Q Consensus 728 ~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~-~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi 805 (1108)
++..++.||+|+++|||+++....+.+.|+ +..+..+. .....+||+|+++++ ||||||+|.+|+|+||
T Consensus 154 ~s~~~~~G~~V~aiG~P~g~~~tvt~Givs---------~~~r~~~~~~~~~~~iqtda~i~~GnSGGpl~n~~G~vvGI 224 (448)
T 1ky9_A 154 DSDALRVGDYTVAIGNPFGLGETVTSGIVS---------ALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGI 224 (448)
T ss_dssp CGGGCCTTCEEEEEECTTSSSCEEEEEEEE---------EESSCC-----CCCCEEESCCCTTSCCCSEEECTTSCEEEE
T ss_pred ccccCCCCCEEEEEECCCCCCCeEEeEEEe---------eccccccCCCCccCEEEEcCCCCCCCCCCeeECCCCEEEEE
Confidence 887899999999999999986544444444 33222111 113478999999965 7999999999999999
Q ss_pred EeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcCCCCCcccccCcccCCCceeeeeeEEEEcChHhHHHcCCCHH
Q 001280 806 WGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDD 885 (1108)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~ 885 (1108)
+++.... +....++.|+||++.+++++++|+++++ +.|+ |||+.++.++...++.+|++..
T Consensus 225 ~~~~~~~------~~~~~g~gfaIP~~~~~~~~~~l~~~g~--------v~~~-----~LGv~~~~~~~~~a~~lgl~~~ 285 (448)
T 1ky9_A 225 NTAILAP------DGGNIGIGFAIPSNMVKNLTSQMVEYGQ--------VKRG-----ELGIMGTELNSELAKAMKVDAQ 285 (448)
T ss_dssp EECSSTT------SCCCSSSEEEEEHHHHHHHHHHHHHHSS--------CCBC-----CCCCSCCCTTSHHHHTSCCTTC
T ss_pred EEEeecC------CCCccceeeeeecccchhhHHHHhhhcc--------ccee-----ccccccccccHHHHHHhCCCCC
Confidence 9885443 1122345588999999999999998876 6677 8999999999888888998754
Q ss_pred HHHHHHhcCCCccceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEE
Q 001280 886 WVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREI 964 (1108)
Q Consensus 886 wi~~~~~~~~~~~~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~ 964 (1108)
.+++|..|.++|||+++ |+.||+|++|||++|.++.++..++....+| +++.++|.|+|+.+
T Consensus 286 -------------~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~~ 348 (448)
T 1ky9_A 286 -------------RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVG----SKLTLGLLRDGKQV 348 (448)
T ss_dssp -------------CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTT----CCCEEEEESSSCEE
T ss_pred -------------CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCC----CEEEEEEEECCEEE
Confidence 67889999999999999 9999999999999999999999888655565 78999999999998
Q ss_pred EEEEeecccCCCC---CcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC
Q 001280 965 ELQVGTDVRDGNG---TTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD 1041 (1108)
Q Consensus 965 ~v~v~~~~~~~~~---t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~ 1041 (1108)
++++++...+... ......++|+.++... ...|++|..|.++|||+++||++||.|++|||+++.+
T Consensus 349 ~~~v~~~~~~~~~~~~~~~~~~~~G~~l~~~~-----------~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~ 417 (448)
T 1ky9_A 349 NVNLELQQSSQNQVDSSSIFNGIEGAEMSNKG-----------KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN 417 (448)
T ss_dssp ECCCC---------------------------------------------------------------------------
T ss_pred EEEEEEecCCCcccccccccccccceEeeccC-----------CCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCC
Confidence 8888775433211 0111233466554321 1238899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEE
Q 001280 1042 LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1075 (1108)
Q Consensus 1042 l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk 1075 (1108)
+++|.+++++.+ + .+.|. +.|+|+.+.++++
T Consensus 418 ~~~l~~~l~~~~-~-~v~l~-v~R~g~~~~~~l~ 448 (448)
T 1ky9_A 418 IAELRKVLDSKP-S-VLALN-IQRGDSTIYLLMQ 448 (448)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHcCC-C-eEEEE-EEECCEEEEEEeC
Confidence 999999999754 4 78888 7999988777653
No 10
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=100.00 E-value=2.7e-41 Score=383.74 Aligned_cols=298 Identities=17% Similarity=0.290 Sum_probs=253.1
Q ss_pred cCchhHHHHHHHhCCceEEEEEeeeec-cCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEEE
Q 001280 33 ATADDWRKALNKVVPAVVVLRTTACRA-FDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPI 111 (1108)
Q Consensus 33 ~~~~~~~~~~~~~~~sVV~I~~~~~~~-~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv 111 (1108)
....++.++++++.+|||+|.+..... ++......+.||||+|++ +||||||+||+. +...+.+++.+++.++++++
T Consensus 6 ~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~gsG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~~~a~v~ 83 (318)
T 1te0_A 6 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ-RGYIITNKHVIN-DADQIIVALQDGRVFEALLV 83 (318)
T ss_dssp CCCCCCHHHHHHHGGGEEEEEEEEECSSSSCCEEEEEEEEEEECST-TCEEEEEHHHHT-TCSEEEEECTTSCEEEEEEE
T ss_pred cccccHHHHHHhcCCcEEEEEeEeccCCcccccccCccEEEEEEeC-CCEEEECHHHcC-CCCEEEEEeCCCCEEEEEEE
Confidence 344568899999999999999976432 222223467899999997 699999999999 45678999999999999999
Q ss_pred EEcCCCceEEEEECCC-CcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceE
Q 001280 112 YRDPVHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFY 190 (1108)
Q Consensus 112 ~~d~~~DlAlLk~d~~-~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~ 190 (1108)
++|+.+||||||++.. .++++.+.. +..+++|++|+++|||.+...+++.|+|+...+... ....+ ..+
T Consensus 84 ~~d~~~DlAllk~~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~--~~~~~----~~~ 153 (318)
T 1te0_A 84 GSDSLTDLAVLIIKATGGLPTIPINA----RRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGL--NPTGR----QNF 153 (318)
T ss_dssp EEETTTTEEEEECCCSSCCCCCCCCT----TCCCCTTCEEEEECCCSSSSCCEEEEEEEECCCCCC--CTTCS----CCS
T ss_pred EeCCCceEEEEEEeCCCCCceEEeeC----ccCCCCCCEEEEEEcCCCCCCcEEeeEEeccccccc--CCCCc----CCE
Confidence 9999999999999875 444444432 457899999999999999989999999999876532 11122 235
Q ss_pred EEEeeecCCCCCCCceecccCcEEEEeecccC-------CCCcccccChHHHHHHHHHHHhcCCcccccccccccCCCcc
Q 001280 191 MQAASGTKGGSSGSPVIDWQGRAVALNAGSKS-------SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTL 263 (1108)
Q Consensus 191 i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~-------~~~~~falPi~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~l 263 (1108)
|++++.+.+|+|||||||.+|+||||++++.. ..+.+|+||++.+++++++|.+++ .+.|+||
T Consensus 154 i~~d~~~~~G~SGGPl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g----------~~~~~~l 223 (318)
T 1te0_A 154 LQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG----------RVIRGYI 223 (318)
T ss_dssp EEESSCCCTTTTTSEEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHS----------SCCCEEC
T ss_pred EEECCCCCCCCCcCceECCCCeEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHHcC----------Ccccccc
Confidence 99999999999999999999999999987654 247899999999999999999887 7889999
Q ss_pred CeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhc-
Q 001280 264 QVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD- 341 (1108)
Q Consensus 264 g~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~- 341 (1108)
|+.++.++...++.||++ ...|++| ..|.++|||++ ||++||+|++|||+++.++.++..++..
T Consensus 224 Gi~~~~~~~~~~~~~g~~-------------~~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~l~~~l~~~ 289 (318)
T 1te0_A 224 GIGGREIAPLHAQGGGID-------------QLQGIVV-NEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEI 289 (318)
T ss_dssp CEEEEECSCCCSSSSCSS-------------SCCCEEE-EEECTTSTTTTTCCCTTCCEEEETTEECCCHHHHHHHHHTS
T ss_pred eeEeeecchhHHHhccCC-------------CCCcEEE-EEeCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhc
Confidence 999999988888889987 5688887 69999999999 9999999999999999999999998865
Q ss_pred CCCCeEEEEEEECCEEEEEEE-cccc
Q 001280 342 GVDKNIELLIERGGISMTVNL-VQDL 366 (1108)
Q Consensus 342 ~~g~~v~l~V~R~g~~~~~~v-~~~~ 366 (1108)
.+|++++|+|.|+|+.+++++ +...
T Consensus 290 ~~g~~v~l~v~R~g~~~~~~v~~~~~ 315 (318)
T 1te0_A 290 RPGSVIPVVVMRDDKQLTLQVTIQEY 315 (318)
T ss_dssp CTTCEEEEEEESSSCEEEEEEECEEC
T ss_pred CCCCEEEEEEEECCEEEEEEEEEccC
Confidence 789999999999999999988 6544
No 11
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=100.00 E-value=1.7e-40 Score=377.87 Aligned_cols=307 Identities=21% Similarity=0.316 Sum_probs=243.7
Q ss_pred ccCchhHHHHHHHhCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEEE
Q 001280 32 VATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPI 111 (1108)
Q Consensus 32 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv 111 (1108)
......+.++++++.+|||+|......+|++.....+.||||+|++ +||||||+||+. +...+.|++.+++.++++++
T Consensus 11 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~gsG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~~~a~v~ 88 (325)
T 1lcy_A 11 RSQYNFIADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAA-DGLIVTNAHVVA-DRRRVRVRLLSGDTYEAVVT 88 (325)
T ss_dssp HHHSCHHHHHHHHHGGGEEEEEEEEEETTTTEEEEEEEEEEEEEET-TTEEEECHHHHT-TCSEEEEECTTSCEEEEEEE
T ss_pred ccchhHHHHHHHHhCCcEEEEEEEecCccCCCccccccEEEEEEeC-CCEEEECHHHcC-CCCEEEEEeCCCCEEEEEEE
Confidence 3445679999999999999999876555655444467899999997 799999999999 46689999999999999999
Q ss_pred EEcCCCceEEEEECCC-CcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceE
Q 001280 112 YRDPVHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFY 190 (1108)
Q Consensus 112 ~~d~~~DlAlLk~d~~-~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~ 190 (1108)
++|+.+||||||++.. .++++.+.. +..++.|++|+++|||.+...+++.|+++...+....++ +......+
T Consensus 89 ~~d~~~DlAllkl~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~~~~~~v~~G~vs~~~~~~~~~g---~~~~~~~~ 161 (325)
T 1lcy_A 89 AVDPVADIATLRIQTKEPLPTLPLGR----SADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLG---LPQTNVEY 161 (325)
T ss_dssp EEETTTTEEEEECCCSSCCCCCCBCC----GGGCCTTCEEEECCCTTSSSSCCEEEEBCSCSCC------------CCCC
T ss_pred EECCCCCEEEEEEcCCCCCceEEecc----cccCCCCCEEEEEECCCCCCCcEEeEEEecccccccccC---CCCCCCCE
Confidence 9999999999999864 344444432 457899999999999999988999999998877543222 11112346
Q ss_pred EEEeeecCCCCCCCceecccCcEEEEeecccCCCCcccccChHHHHHHHHHHHhcCCcccccccccccCCCccCeEEEEc
Q 001280 191 MQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHK 270 (1108)
Q Consensus 191 i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~~~~falPi~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~lg~~~~~~ 270 (1108)
|++++.+.+|+|||||||.+|+||||++++.. .+.+|+||++.++++|+++++.+. .+..-.+.|++||+.+..+
T Consensus 162 i~~d~~~~~G~SGGPl~~~~G~vVGI~s~~~~-~g~~~aip~~~i~~~l~~~~~~~~----~~g~~~~~r~~lGv~~~~l 236 (325)
T 1lcy_A 162 IQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT-AGISFAIPSDRLREFLHRGEKKNS----SSGISGSQRRYIGVMMLTL 236 (325)
T ss_dssp EEESSCCSTTTTTSEEEETTSCEEEEEEEEEE-TTEEEEEEHHHHHHHTCC-------------------EECCEEEEEC
T ss_pred EEEcCCCCCCCccccEECCCCEEEEEEeEeec-CCeeEEEEHHHHHHHHHHhhhccc----ccccccccccccceEeecC
Confidence 99999999999999999999999999988653 578999999999999998876420 0000157899999999999
Q ss_pred ChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEE
Q 001280 271 GFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIEL 349 (1108)
Q Consensus 271 ~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l 349 (1108)
+.+.++.+|++. ..+|+...|++| ..|.++|||++ ||++||+|++|||++|.++.++..++.. ++++.|
T Consensus 237 ~~~~~~~~~l~~-------~~~~~~~~gv~V-~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~l~~~l~~--~~~v~l 306 (325)
T 1lcy_A 237 SPSILAELQLRE-------PSFPDVQHGVLI-HKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT--QSQLAV 306 (325)
T ss_dssp CHHHHHHHTTSC-------TTSCCCSSCEEE-EEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHTT--CSSEEE
T ss_pred CHHHHHhhCccc-------cccccCCCCeEE-EEeCcCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHhC--CCeEEE
Confidence 999999999862 123334578887 69999999999 9999999999999999999999988865 589999
Q ss_pred EEEECCEEEEEEE
Q 001280 350 LIERGGISMTVNL 362 (1108)
Q Consensus 350 ~V~R~g~~~~~~v 362 (1108)
+|.|+|+.+++++
T Consensus 307 ~v~R~g~~~~~~v 319 (325)
T 1lcy_A 307 QIRRGRETLTLYV 319 (325)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEECCEEEEEEE
Confidence 9999999998887
No 12
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-39 Score=373.96 Aligned_cols=301 Identities=24% Similarity=0.360 Sum_probs=247.6
Q ss_pred cCccCchhHHHHHHHhCCceEEEEEeeee--ccCC--CCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeE
Q 001280 30 ENVATADDWRKALNKVVPAVVVLRTTACR--AFDT--EAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREE 105 (1108)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~sVV~I~~~~~~--~~d~--~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~ 105 (1108)
...+.+..+.++++++.+|||.|...... .|.. .....+.||||+|++ +||||||+||+. +...+.+++.+++.
T Consensus 11 ~~~~~e~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~~g~GSG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~ 88 (348)
T 3qo6_A 11 KLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDK-QGHIVTNYHVIR-GASDLRVTLADQTT 88 (348)
T ss_dssp CCCHHHHHHHHHHHHHGGGEEEEEEEEEEECSSSCCEEEEEEEEEEEEEEET-TTEEEECHHHHT-TCSEEEEECTTSCE
T ss_pred ccCcchhHHHHHHHHhCCCEEEEEEEeecccccccccccccCceEEEEEEeC-CCEEEECHHHhC-CCcEEEEEECCCCE
Confidence 34566778889999999999999987532 1211 112356899999997 799999999999 56789999999999
Q ss_pred EeEEEEEEcCCCceEEEEECCCCcccccccCCCCC-CcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcc
Q 001280 106 IPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYN 184 (1108)
Q Consensus 106 ~~a~vv~~d~~~DlAlLk~d~~~~~~~~~~~l~l~-~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~ 184 (1108)
+++++++.|+.+||||||++... ..+.+++|. +..+++|+.|+++|||.+...+++.|.++.+.+....+.. .
T Consensus 89 ~~a~~v~~d~~~DlAlLkl~~~~---~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~~~~~~g~vs~~~~~~~~~~~---~ 162 (348)
T 3qo6_A 89 FDAKVVGFDQDKDVAVLRIDAPK---NKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAAT---G 162 (348)
T ss_dssp EEEEEEEEEGGGTEEEEECCCCG---GGCCCCCBCCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECCSSS---S
T ss_pred EEEEEEEEcCcCCEEEEEEcCCC---CCceeEEecCcccCCCCCEEEEEECCCCCCCcEeEEEEEeeccccccccC---C
Confidence 99999999999999999998642 123344443 5678999999999999999999999999998876443211 1
Q ss_pred cccceEEEEeeecCCCCCCCceecccCcEEEEeecccC----CCCcccccChHHHHHHHHHHHhcCCcccccccccccCC
Q 001280 185 DFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS----SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPR 260 (1108)
Q Consensus 185 ~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~----~~~~~falPi~~i~~~l~~l~~~~~~~~~~~~~~~v~r 260 (1108)
.....++++++.+.+|+|||||+|.+|+||||+++... ..+.+|+||++.+++++++|.+++ .+.|
T Consensus 163 ~~~~~~i~~da~i~~G~SGGPLvn~~G~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~g----------~~~~ 232 (348)
T 3qo6_A 163 RPIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFG----------KVTR 232 (348)
T ss_dssp SCEEEEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHHS----------SCCC
T ss_pred CcccCEEEEeCCcCCCCcHHHhhCCCCeEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHhCC----------ceee
Confidence 11235799999999999999999999999999987654 257899999999999999999887 7899
Q ss_pred CccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCC-----------CCEEEEECCEE
Q 001280 261 GTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEP-----------GDVLVRVNGEV 328 (1108)
Q Consensus 261 g~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~-----------GD~Il~VnG~~ 328 (1108)
+|||+.+... ..++.+| ..|++| ..|.++|||++ ||++ ||+|++|||++
T Consensus 233 ~~lGi~~~~~--~~~~~~~----------------~~Gv~V-~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~ 293 (348)
T 3qo6_A 233 PILGIKFAPD--QSVEQLG----------------VSGVLV-LDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTK 293 (348)
T ss_dssp EECCCEECCT--TTTTTTT----------------CSSEEE-EECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBC
T ss_pred eecCcEEccc--hhhhhcC----------------CceEEE-EEecCCChHHHcCCccccccccCCCCCCCEEEEECCEE
Confidence 9999998632 2222233 268888 59999999999 9999 99999999999
Q ss_pred eCChhHHHHHHh-cCCCCeEEEEEEECCEEEEEEE-ccccc
Q 001280 329 ITQFLKLETLLD-DGVDKNIELLIERGGISMTVNL-VQDLH 367 (1108)
Q Consensus 329 v~~~~~l~~~l~-~~~g~~v~l~V~R~g~~~~~~v-~~~~~ 367 (1108)
|.+|.++..++. ..+|++++|+|.|+|+.+++++ +..++
T Consensus 294 v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~ 334 (348)
T 3qo6_A 294 VSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPKP 334 (348)
T ss_dssp CSSSHHHHHHHTTCCTTCEEEEEEECSSSEEEEEEECEECC
T ss_pred eCCHHHHHHHHHhCCCcCEEEEEEEECCEEEEEEEEEccCC
Confidence 999999999984 5789999999999999999999 77664
No 13
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=100.00 E-value=2.9e-40 Score=377.46 Aligned_cols=310 Identities=16% Similarity=0.296 Sum_probs=162.4
Q ss_pred CccCchhHHHHHHHhCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEE
Q 001280 31 NVATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYP 110 (1108)
Q Consensus 31 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~v 110 (1108)
+......+.++++++.+|||+|.+..+.+|+......+.||||+|++ +||||||+||+. +...+.+.+.+++.+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~-~G~ILTaaHvv~-~~~~i~V~~~~g~~~~a~~ 86 (332)
T 3num_A 9 LRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSE-DGLIVTNAHVVT-NKHRVKVELKNGATYEAKI 86 (332)
T ss_dssp HHHHHCHHHHHHHHHGGGEEEEEEEEECTTSSCEEEEEEEEEEEEET-TTEEEECTTTCC-TTSEEEEEETTSCEEEEEE
T ss_pred cccccchHHHHHHHhcCcEEEEEEEeccccCCCcceeeeEEEEEEeC-CCEEEEChHHcC-CCCEEEEEECCCCEEEEEE
Confidence 34555789999999999999999988778877777778999999997 799999999999 5678999999999999999
Q ss_pred EEEcCCCceEEEEECCC-CcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccce
Q 001280 111 IYRDPVHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTF 189 (1108)
Q Consensus 111 v~~d~~~DlAlLk~d~~-~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~ 189 (1108)
++.|+.+||||||++.. .++++.+.. +..+++|+.|+++|||.+...+++.|.++...+..... .+......
T Consensus 87 ~~~d~~~DlAlL~l~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~~~---~~~~~~~~ 159 (332)
T 3num_A 87 KDVDEKADIALIKIDHQGKLPVLLLGR----SSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL---GLRNSDMD 159 (332)
T ss_dssp EEEETTTTEEEEEECCSSCCCCCCBCC----TTSCCTTCEEEEECC-----CCEEEEEEEEC-----------------C
T ss_pred EEecCCCCeEEEEEcCCCCCceeeecC----cccCCCCCEEEEEECCCCCCcceeeeEEEeeccccccc---CcCCCcCC
Confidence 99999999999999864 344444433 56789999999999999999999999999887753221 22222345
Q ss_pred EEEEeeecCCCCCCCceecccCcEEEEeecccCCCCcccccChHHHHHHHHHHHhcCCcccccccccccCCCccCeEEEE
Q 001280 190 YMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVH 269 (1108)
Q Consensus 190 ~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~~~~falPi~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~lg~~~~~ 269 (1108)
++++++.+.+|+|||||||.+|+||||+++... .+.+|+||++.++++|+++.+... .....+.|+|||+.+..
T Consensus 160 ~i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~-~g~~~aip~~~i~~~l~~~~~~~~-----~g~~~~~r~~lGi~~~~ 233 (332)
T 3num_A 160 YIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT-AGISFAIPSDKIKKFLTESHDRQA-----KGKAITKKKYIGIRMMS 233 (332)
T ss_dssp CEEESSCCCTTTTTSEEEETTSCEEEEEEEEEE-TTEEEEEEHHHHHHHHHHHCC-------------------------
T ss_pred EEEEECCcCCCCcHHHhhCCCCcEEEEEeeEec-ccceEEECHHHHHHHHHHHhhhhc-----cCcccccccccceEEEe
Confidence 699999999999999999999999999987654 579999999999999998743110 00014679999999998
Q ss_pred cChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEE
Q 001280 270 KGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIE 348 (1108)
Q Consensus 270 ~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~ 348 (1108)
++.+.++.+++.. ..+++...|++| ..|.++|||++ ||++||+|++|||++|.++.++..++.. |++++
T Consensus 234 ~~~~~~~~~~~~~-------~~~~~~~~g~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~--~~~v~ 303 (332)
T 3num_A 234 LTSSKAKELKDRH-------RDFPDVISGAYI-IEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKR--ESTLN 303 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHhhhhhhhc-------cccCCCCCceEE-EEeccCCChHHcCCCCCCEEEEECCEECCCHHHHHHHHhC--CCeEE
Confidence 8877776665431 122324578887 69999999999 9999999999999999999999888754 78899
Q ss_pred EEEEECCEEEEEEE-ccc
Q 001280 349 LLIERGGISMTVNL-VQD 365 (1108)
Q Consensus 349 l~V~R~g~~~~~~v-~~~ 365 (1108)
|+|.|+|+.+++++ ...
T Consensus 304 l~v~R~g~~~~~~v~p~~ 321 (332)
T 3num_A 304 MVVRRGNEDIMITVIPEE 321 (332)
T ss_dssp ------------------
T ss_pred EEEEECCEEEEEEEEEee
Confidence 99999999988887 543
No 14
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=100.00 E-value=1.4e-38 Score=363.83 Aligned_cols=301 Identities=21% Similarity=0.279 Sum_probs=242.7
Q ss_pred cccccccccEEEEEEEcCccc----------ccCC------cccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEE
Q 001280 619 FAESVIEPTLVMFEVHVPPSC----------MIDG------VHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLS 682 (1108)
Q Consensus 619 ~~~~~~~~S~V~V~~~~~~~~----------~~dg------~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~ 682 (1108)
.+.+++.||+|.|.+...... .++. .....+.||||||+ .++|||||| +||+.++.++.|+
T Consensus 17 ~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~--~~~G~IlTn-aHVv~~~~~i~V~ 93 (345)
T 3stj_A 17 PMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIIN--ASKGYVLTN-NHVINQAQKISIQ 93 (345)
T ss_dssp HHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEE--TTTTEEEEC-HHHHTTEEEEEEE
T ss_pred HHHHHhCCcEEEEEEEEeecccccCchhhhhhcccccccccCcccceeEEEEEEE--CCCCEEEEC-hHHhCCCCEEEEE
Confidence 388999999999998764210 1111 01235789999999 234999999 5567788899999
Q ss_pred eecCCeEEeEEEEEeeCCCcEEEEEEC-CCCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEecccc
Q 001280 683 FAAFPIEIPGEVVFLHPVHNFALIAYD-PSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCA 761 (1108)
Q Consensus 683 ~~~~~~~~~a~vv~~dp~~dlAilk~d-~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~ 761 (1108)
+.+ +..++|++++.|+.+||||||++ +..+++ ++|+++..++.||+|+++|+|++.......+.|+...
T Consensus 94 ~~d-g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~--------~~l~~s~~~~~G~~V~aiG~p~g~~~~vt~G~Vs~~~- 163 (345)
T 3stj_A 94 LND-GREFDAKLIGSDDQSDIALLQIQNPSKLTQ--------IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALG- 163 (345)
T ss_dssp CTT-SCEEEEEEEEEETTTTEEEEEESSCCSCCC--------CCBCCGGGCCTTBEEEEEECGGGCSCEEEEEEEEEEE-
T ss_pred eCC-CcEEEEEEEEEcCCCCEEEEEEcccCCCce--------EeecCcccCCCCCEEEEEECCCCCCCcEEeeEEeeec-
Confidence 998 99999999999999999999995 445554 8898887899999999999999987666666665221
Q ss_pred ccccCCCCCCccccccceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHH
Q 001280 762 ALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDK 840 (1108)
Q Consensus 762 ~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~ 840 (1108)
....... ....+|++|+++++ +|||||+|.+|+||||+++.... +....++.||||++.+++++++
T Consensus 164 ---~~~~~~~----~~~~~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~------~~~~~g~gfaIP~~~~~~~~~~ 230 (345)
T 3stj_A 164 ---RSGLNLE----GLENFIQTDASINRGNSGGALLNLNGELIGINTAILAP------GGGSVGIGFAIPSNMARTLAQQ 230 (345)
T ss_dssp ---ECCSSSS----SSCCEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECT------TSSCSSCEEEEEHHHHHHHHHH
T ss_pred ---ccccCCC----CccCEEEEecccCCCcCccceeCCCCEEEEEEeccccC------CCCcceeEEEEehHHHHHHHHH
Confidence 1101111 23468999999955 79999999999999999886543 1223445689999999999999
Q ss_pred HHcCCCCCcccccCcccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhHh-ccCC
Q 001280 841 IISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQG 919 (1108)
Q Consensus 841 l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A~~a-L~~G 919 (1108)
|++.++ +.|+ |||+.++.++...++.+|++.. ++++|..|.++|||+++ |++|
T Consensus 231 l~~~g~--------v~~~-----~lGv~~~~~~~~~a~~~gl~~~-------------~G~~V~~V~~~spA~~aGL~~G 284 (345)
T 3stj_A 231 LIDFGE--------IKRG-----LLGIKGTEMSADIAKAFNLDVQ-------------RGAFVSEVLPGSGSAKAGVKAG 284 (345)
T ss_dssp HHHHSS--------CCCE-----ECCEEEEECCHHHHHHTTCSCC-------------SSEEEEEECTTSHHHHHTCCTT
T ss_pred HHhccc--------cccc-----ccceeeEeecHHHHHhcCCCCC-------------ceEEEEEeccCChHHHcCCCCC
Confidence 998876 6677 9999999999999999998654 67889999999999999 9999
Q ss_pred CEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccCC
Q 001280 920 DMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDG 975 (1108)
Q Consensus 920 DiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~~ 975 (1108)
|+|++|||++|+++.++..++....+| ++++++|.|+|+++++++++...+.
T Consensus 285 DvI~~ing~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~l~~~~~ 336 (345)
T 3stj_A 285 DIITSLNGKPLNSFAELRSRIATTEPG----TKVKLGLLRNGKPLEVEVTLDTSTS 336 (345)
T ss_dssp CEECEETTEECSCHHHHHHHHHTSCTT----CEEEEEEEETTEEEEEEEECEEC--
T ss_pred CEEEEECCEECCCHHHHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEEcccCC
Confidence 999999999999999999999776676 8999999999999999999987654
No 15
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=100.00 E-value=2.4e-38 Score=360.64 Aligned_cols=286 Identities=21% Similarity=0.310 Sum_probs=234.4
Q ss_pred hhHHHHHHHhCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCC--------eEEEEEecCCeEEe
Q 001280 36 DDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP--------VVAEAMFVNREEIP 107 (1108)
Q Consensus 36 ~~~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~--------~~~~v~~~d~~~~~ 107 (1108)
.++.++++++.+|||+|..... ...+.||||+|++ +||||||+||+.... ..+.+++.+++.++
T Consensus 6 ~~~~~~~~~~~~svV~I~~~~~-------~~~~~gsG~iI~~-~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g~~~~ 77 (324)
T 1y8t_A 6 GSVEQVAAKVVPSVVMLETDLG-------RQSEEGSGIILSA-EGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAP 77 (324)
T ss_dssp CCHHHHHHHHGGGEEEEEEEC-----------CEEEEEECCT-TSEEEEEHHHHTTCC--------CEEEEEETTCCEEC
T ss_pred ccHHHHHHHhcCcEEEEEEEcc-------CCCceEEEEEEeC-CCEEEEChHHcCCcccccccCCceEEEEEeCCCCEEE
Confidence 5789999999999999988532 2457899999997 699999999998543 27899999999999
Q ss_pred EEEEEEcCCCceEEEEECC-CCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccc
Q 001280 108 VYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDF 186 (1108)
Q Consensus 108 a~vv~~d~~~DlAlLk~d~-~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~ 186 (1108)
++++++|+.+||||||++. ..++++.+.. +..+++|++|+++|||.+...+++.|+++...+........++...
T Consensus 78 a~vv~~d~~~DlAllkl~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~G~vs~~~~~~~~~~~~g~~~~ 153 (324)
T 1y8t_A 78 FTVVGADPTSDIAVVRVQGVSGLTPISLGS----SSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNT 153 (324)
T ss_dssp EEEEECCTTTTEEEEEECSCCSCCCCEECC----STTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECC-------CC
T ss_pred EEEEEeCCCCCEEEEEECCCCCCceEEecC----cccCCCCCEEEEEEcCCCCCCcEeeeEEeecccccccccccCcccc
Confidence 9999999999999999986 3455444443 4578999999999999998889999999988764321111111112
Q ss_pred cceEEEEeeecCCCCCCCceecccCcEEEEeecccCC-----------CCcccccChHHHHHHHHHHHhcCCcccccccc
Q 001280 187 NTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS-----------SASAFFLPLERVVRALRFLQERRDCNIHNWEA 255 (1108)
Q Consensus 187 ~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-----------~~~~falPi~~i~~~l~~l~~~~~~~~~~~~~ 255 (1108)
...+|++++.+.+|+|||||+|.+|+||||++++... .+++|+||++.+++++++|.+++
T Consensus 154 ~~~~i~~d~~~~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g--------- 224 (324)
T 1y8t_A 154 VLDAIQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTG--------- 224 (324)
T ss_dssp CEEEEEECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHS---------
T ss_pred cCCEEEEcCCCCCCCccCcEECCCCeEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHHcC---------
Confidence 3457999999999999999999999999999876432 36899999999999999998877
Q ss_pred cccCCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhH
Q 001280 256 VSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLK 334 (1108)
Q Consensus 256 ~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~ 334 (1108)
.+.|++||+.+.... ...|++| ..|.++|||++ ||++||+|++|||++|.+|.+
T Consensus 225 -~~~~~~lGi~~~~~~-----------------------~~~g~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~ 279 (324)
T 1y8t_A 225 -KASHASLGVQVTNDK-----------------------DTLGAKI-VEVVAGGAAANAGVPKGVVVTKVDDRPINSADA 279 (324)
T ss_dssp -CCCCEECCEEEESCS-----------------------SSSSEEE-EEECTTSTTTTTTCCTTCEEEEETTEECCSHHH
T ss_pred -CccccccceEeeecc-----------------------CCCceEE-EEECCCChHHHcCCCCCCEEEEECCEECCCHHH
Confidence 688999999987421 3578777 69999999999 999999999999999999999
Q ss_pred HHHHHhc-CCCCeEEEEEEE-CCEEEEEEE-ccccc
Q 001280 335 LETLLDD-GVDKNIELLIER-GGISMTVNL-VQDLH 367 (1108)
Q Consensus 335 l~~~l~~-~~g~~v~l~V~R-~g~~~~~~v-~~~~~ 367 (1108)
+..++.. .+|++++|+|+| +|+.+++++ +...+
T Consensus 280 l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v~~~~~~ 315 (324)
T 1y8t_A 280 LVAAVRSKAPGATVALTFQDPSGGSRTVQVTLGKAE 315 (324)
T ss_dssp HHHHHHTSCTTCEEEEEEECSSCCEEEEEEECEEC-
T ss_pred HHHHHHhcCCCCEEEEEEEECCCCEEEEEEEEccCC
Confidence 9988854 689999999999 999999888 66543
No 16
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=100.00 E-value=5.3e-36 Score=340.19 Aligned_cols=300 Identities=15% Similarity=0.213 Sum_probs=238.6
Q ss_pred cccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEee
Q 001280 619 FAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH 698 (1108)
Q Consensus 619 ~~~~~~~~S~V~V~~~~~~~~~~dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d 698 (1108)
..++++.+|+|.|.+..+... .++.......||||+|+ ++||||||+| |+.++.++.|++.+ +..++|++++.|
T Consensus 13 ~~~~~~~~sVV~I~~~~~~~~-~~~~~~~~~~gsG~iI~---~~G~IlT~aH-vv~~~~~i~V~~~~-g~~~~a~v~~~d 86 (318)
T 1te0_A 13 LAVRRAAPAVVNVYNRGLNTN-SHNQLEIRTLGSGVIMD---QRGYIITNKH-VINDADQIIVALQD-GRVFEALLVGSD 86 (318)
T ss_dssp HHHHHHGGGEEEEEEEEECSS-SSCCEEEEEEEEEEECS---TTCEEEEEHH-HHTTCSEEEEECTT-SCEEEEEEEEEE
T ss_pred HHHHhcCCcEEEEEeEeccCC-cccccccCccEEEEEEe---CCCEEEECHH-HcCCCCEEEEEeCC-CCEEEEEEEEeC
Confidence 378899999999998875211 12223346789999999 5799999955 55677789999998 999999999999
Q ss_pred CCCcEEEEEECCC-CCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccc-cc
Q 001280 699 PVHNFALIAYDPS-SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR-AM 776 (1108)
Q Consensus 699 p~~dlAilk~d~~-~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~-~~ 776 (1108)
+.+||||||++.. .+++ ++|+++..++.|++|+++|||.+.......+.|+. ..+..|. ..
T Consensus 87 ~~~DlAllk~~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~---------~~~~~~~~~~ 149 (318)
T 1te0_A 87 SLTDLAVLIIKATGGLPT--------IPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA---------TGRIGLNPTG 149 (318)
T ss_dssp TTTTEEEEECCCSSCCCC--------CCCCTTCCCCTTCEEEEECCCSSSSCCEEEEEEEE---------CCCCCCCTTC
T ss_pred CCceEEEEEEeCCCCCce--------EEeeCccCCCCCCEEEEEEcCCCCCCcEEeeEEec---------ccccccCCCC
Confidence 9999999999865 4544 88887666899999999999998765555555552 2211111 12
Q ss_pred cceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcCCCCCcccccCc
Q 001280 777 NMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGV 855 (1108)
Q Consensus 777 ~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~~~~~~~~~~~v 855 (1108)
...+|++|+.+.+ +|||||+|.+|+|+||+++..... + ......++.|+||++.+++++++|+++++ +
T Consensus 150 ~~~~i~~d~~~~~G~SGGPl~~~~G~vvGI~s~~~~~~--~-~~~~~~~~~~aip~~~i~~~l~~l~~~g~--------~ 218 (318)
T 1te0_A 150 RQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKS--N-DGETPEGIGFAIPFQLATKIMDKLIRDGR--------V 218 (318)
T ss_dssp SCCSEEESSCCCTTTTTSEEECTTCCEEEEEECCSSSS--S-SCCSCCSCEEEEEHHHHHHHHHHHHHHSS--------C
T ss_pred cCCEEEECCCCCCCCCcCceECCCCeEEEEEeeeeccC--C-ccccccceEEeccHHHHHHHHHHHHHcCC--------c
Confidence 3467899999854 799999999999999998754320 0 00123455689999999999999998765 5
Q ss_pred ccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCChh
Q 001280 856 KRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFH 934 (1108)
Q Consensus 856 ~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~ 934 (1108)
.|+ |||+.++.++...++.+|++.. .+++|..|.++|||+++ |++||+|++|||++|.++.
T Consensus 219 ~~~-----~lGi~~~~~~~~~~~~~g~~~~-------------~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~ 280 (318)
T 1te0_A 219 IRG-----YIGIGGREIAPLHAQGGGIDQL-------------QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISAL 280 (318)
T ss_dssp CCE-----ECCEEEEECSCCCSSSSCSSSC-------------CCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCHH
T ss_pred ccc-----cceeEeeecchhHHHhccCCCC-------------CcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCHH
Confidence 566 9999999998888888887643 67889999999999999 9999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccC
Q 001280 935 DIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRD 974 (1108)
Q Consensus 935 dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~ 974 (1108)
++..++....+| +++.++|.|+|+.+++++++...+
T Consensus 281 ~l~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~~~~~~ 316 (318)
T 1te0_A 281 ETMDQVAEIRPG----SVIPVVVMRDDKQLTLQVTIQEYP 316 (318)
T ss_dssp HHHHHHHTSCTT----CEEEEEEESSSCEEEEEEECEECC
T ss_pred HHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEEccCC
Confidence 999998655665 899999999999999999886543
No 17
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=100.00 E-value=4.9e-34 Score=327.79 Aligned_cols=298 Identities=18% Similarity=0.242 Sum_probs=230.8
Q ss_pred ccccccccEEEEEEEcCcccccC--CcccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEe
Q 001280 620 AESVIEPTLVMFEVHVPPSCMID--GVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFL 697 (1108)
Q Consensus 620 ~~~~~~~S~V~V~~~~~~~~~~d--g~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~ 697 (1108)
.++++.+|+|.|.+.......+. ........||||||+ ++||||||+| |+.++.++.|++.+ +..++|++++.
T Consensus 22 ~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~~g~GSG~iI~---~~G~IlT~aH-vv~~~~~i~V~~~~-g~~~~a~~v~~ 96 (348)
T 3qo6_A 22 LFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWD---KQGHIVTNYH-VIRGASDLRVTLAD-QTTFDAKVVGF 96 (348)
T ss_dssp HHHHHGGGEEEEEEEEEEECSSSCCEEEEEEEEEEEEEEE---TTTEEEECHH-HHTTCSEEEEECTT-SCEEEEEEEEE
T ss_pred HHHHhCCCEEEEEEEeecccccccccccccCceEEEEEEe---CCCEEEECHH-HhCCCcEEEEEECC-CCEEEEEEEEE
Confidence 77899999999988654211111 111235689999999 6799999955 56778899999998 99999999999
Q ss_pred eCCCcEEEEEECCCCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCcccccc
Q 001280 698 HPVHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMN 777 (1108)
Q Consensus 698 dp~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~ 777 (1108)
|+.+||||||++... ..+.+++|+++..++.|+.|+++|+|.+.......+.++.+. .- +.. ..+....
T Consensus 97 d~~~DlAlLkl~~~~------~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~~~~~~g~vs~~~-~~-~~~---~~~~~~~ 165 (348)
T 3qo6_A 97 DQDKDVAVLRIDAPK------NKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLR-RE-ISS---AATGRPI 165 (348)
T ss_dssp EGGGTEEEEECCCCG------GGCCCCCBCCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEE-EE-ECC---SSSSSCE
T ss_pred cCcCCEEEEEEcCCC------CCceeEEecCcccCCCCCEEEEEECCCCCCCcEeEEEEEeec-cc-ccc---ccCCCcc
Confidence 999999999997531 133448888777799999999999999887665666665222 10 111 1111123
Q ss_pred ceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcCCCCCcccccCcc
Q 001280 778 MEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGVK 856 (1108)
Q Consensus 778 ~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~~~~~~~~~~~v~ 856 (1108)
..+|++|+.+++ +|||||+|.+|+|+||+++.... .....++.|+||++.+++++++|+++++ +.
T Consensus 166 ~~~i~~da~i~~G~SGGPLvn~~G~vvGI~s~~~~~------~~~~~g~gfaiP~~~~~~~~~~l~~~g~--------~~ 231 (348)
T 3qo6_A 166 QDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSP------SGASSGVGFSIPVDTVGGIVDQLVRFGK--------VT 231 (348)
T ss_dssp EEEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECS------SSSCSSCEEEEEHHHHHHHHHHHHHHSS--------CC
T ss_pred cCEEEEeCCcCCCCcHHHhhCCCCeEEEEEEeeecC------CCCcccEEEEEEecchHHHHHHHHhCCc--------ee
Confidence 478999999955 79999999999999999875433 1222445588999999999999998876 66
Q ss_pred cCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhHh-ccC-----------CCEEEE
Q 001280 857 RPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQ-----------GDMMLA 924 (1108)
Q Consensus 857 r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A~~a-L~~-----------GDiIls 924 (1108)
|+ |||+.+.+.. .++.+| ..+++|..|.++|||+++ |+. ||+|++
T Consensus 232 ~~-----~lGi~~~~~~--~~~~~~----------------~~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ 288 (348)
T 3qo6_A 232 RP-----ILGIKFAPDQ--SVEQLG----------------VSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITS 288 (348)
T ss_dssp CE-----ECCCEECCTT--TTTTTT----------------CSSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECE
T ss_pred ee-----ecCcEEccch--hhhhcC----------------CceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEE
Confidence 77 9999886532 122222 157889999999999999 999 999999
Q ss_pred ECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccC
Q 001280 925 INKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRD 974 (1108)
Q Consensus 925 VnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~ 974 (1108)
|||++|.++.|+..++...++| ++++++|.|+|+++++++++...+
T Consensus 289 ing~~v~~~~dl~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~l~~~~ 334 (348)
T 3qo6_A 289 VNGTKVSNGSDLYRILDQCKVG----DEVTVEVLRGDHKEKISVTLEPKP 334 (348)
T ss_dssp ETTBCCSSSHHHHHHHTTCCTT----CEEEEEEECSSSEEEEEEECEECC
T ss_pred ECCEEeCCHHHHHHHHHhCCCc----CEEEEEEEECCEEEEEEEEEccCC
Confidence 9999999999999999666665 899999999999999999988765
No 18
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=100.00 E-value=5e-33 Score=316.82 Aligned_cols=293 Identities=19% Similarity=0.275 Sum_probs=222.0
Q ss_pred cccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCC--------ceEEEEeecCCeEE
Q 001280 619 FAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISA--------SDVMLSFAAFPIEI 690 (1108)
Q Consensus 619 ~~~~~~~~S~V~V~~~~~~~~~~dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~--------~~i~V~~~~~~~~~ 690 (1108)
..++++.+|+|+|.+... .....||||+|+ ++||||||+|+|.... .++.|++.+ +..+
T Consensus 10 ~~~~~~~~svV~I~~~~~---------~~~~~gsG~iI~---~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~-g~~~ 76 (324)
T 1y8t_A 10 QVAAKVVPSVVMLETDLG---------RQSEEGSGIILS---AEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSD-GRTA 76 (324)
T ss_dssp HHHHHHGGGEEEEEEEC-------------CEEEEEECC---TTSEEEEEHHHHTTCC--------CEEEEEETT-CCEE
T ss_pred HHHHHhcCcEEEEEEEcc---------CCCceEEEEEEe---CCCEEEEChHHcCCcccccccCCceEEEEEeCC-CCEE
Confidence 478889999999987654 245789999999 4689999977664332 379999998 9999
Q ss_pred eEEEEEeeCCCcEEEEEECC-CCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCC
Q 001280 691 PGEVVFLHPVHNFALIAYDP-SSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSAD 769 (1108)
Q Consensus 691 ~a~vv~~dp~~dlAilk~d~-~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~ 769 (1108)
+|++++.|+.+||||||++. ..+++ ++|+++..++.|++|+++|+|++.......+.|+......... .
T Consensus 77 ~a~vv~~d~~~DlAllkl~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~G~vs~~~~~~~~~--~ 146 (324)
T 1y8t_A 77 PFTVVGADPTSDIAVVRVQGVSGLTP--------ISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTT--G 146 (324)
T ss_dssp CEEEEECCTTTTEEEEEECSCCSCCC--------CEECCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECC----
T ss_pred EEEEEEeCCCCCEEEEEECCCCCCce--------EEecCcccCCCCCEEEEEEcCCCCCCcEeeeEEeecccccccc--c
Confidence 99999999999999999976 34444 8888776689999999999999876655566665322111100 1
Q ss_pred CCccccccceEEEEecccCC-CCCceEEcCCeeEEEEEeecccccc-ccCCCCCcceeEecccHHHHHHHHHHHHcCCCC
Q 001280 770 CPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVK-FGCSSSEDHQFVRGIPIYTISRVLDKIISGASG 847 (1108)
Q Consensus 770 ~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~-~~~~~~~~~~~~~aipi~~i~~vl~~l~~~~~~ 847 (1108)
...|......+|++|+.+.+ +|||||+|.+|+|+||+++...... .+.......++.||||++.+++++++|+++++
T Consensus 147 ~~g~~~~~~~~i~~d~~~~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g~- 225 (324)
T 1y8t_A 147 EAGNQNTVLDAIQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGK- 225 (324)
T ss_dssp -----CCCEEEEEECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHSC-
T ss_pred ccCcccccCCEEEEcCCCCCCCccCcEECCCCeEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHHcCC-
Confidence 01121234578999999844 7999999999999999987543200 00001123456689999999999999998765
Q ss_pred CcccccCcccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhHh-ccCCCEEEEEC
Q 001280 848 PSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAIN 926 (1108)
Q Consensus 848 ~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A~~a-L~~GDiIlsVn 926 (1108)
+.|+ |||+.+.... ...+++|..|.++|||+++ |++||+|++||
T Consensus 226 -------~~~~-----~lGi~~~~~~-----------------------~~~g~~V~~v~~~spA~~aGl~~GD~I~~in 270 (324)
T 1y8t_A 226 -------ASHA-----SLGVQVTNDK-----------------------DTLGAKIVEVVAGGAAANAGVPKGVVVTKVD 270 (324)
T ss_dssp -------CCCE-----ECCEEEESCS-----------------------SSSSEEEEEECTTSTTTTTTCCTTCEEEEET
T ss_pred -------cccc-----ccceEeeecc-----------------------CCCceEEEEECCCChHHHcCCCCCCEEEEEC
Confidence 4555 9999886421 1356889999999999999 99999999999
Q ss_pred CEEcCChhHHHHHHHhccCCCCCCCeEEEEEEe-CCEEEEEEEeecccC
Q 001280 927 KQPVTCFHDIENACQALDKDGEDNGKLDITIFR-QGREIELQVGTDVRD 974 (1108)
Q Consensus 927 G~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R-~g~~~~v~v~~~~~~ 974 (1108)
|++|.++.++..++....+| ++++++|+| +|+.+++++++...+
T Consensus 271 g~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~~g~~~~~~v~~~~~~ 315 (324)
T 1y8t_A 271 DRPINSADALVAAVRSKAPG----ATVALTFQDPSGGSRTVQVTLGKAE 315 (324)
T ss_dssp TEECCSHHHHHHHHHTSCTT----CEEEEEEECSSCCEEEEEEECEEC-
T ss_pred CEECCCHHHHHHHHHhcCCC----CEEEEEEEECCCCEEEEEEEEccCC
Confidence 99999999999988655665 889999999 999999999887654
No 19
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=100.00 E-value=3.5e-33 Score=317.64 Aligned_cols=296 Identities=23% Similarity=0.250 Sum_probs=223.7
Q ss_pred ccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEeeC
Q 001280 620 AESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHP 699 (1108)
Q Consensus 620 ~~~~~~~S~V~V~~~~~~~~~~dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~dp 699 (1108)
.++++.+|+|.|++... ..+++.......||||+|+ ++||||||+| |+.++.++.|++.+ +..++|++++.|+
T Consensus 20 ~~~~~~~sVV~I~~~~~--~~~~~~~~~~~~gsG~iI~---~~G~IlT~aH-vv~~~~~i~V~~~~-g~~~~a~v~~~d~ 92 (325)
T 1lcy_A 20 VVEKTAPAVVYIEILDR--HPFLGREVPISNGSGFVVA---ADGLIVTNAH-VVADRRRVRVRLLS-GDTYEAVVTAVDP 92 (325)
T ss_dssp HHHHHGGGEEEEEEEEE--ETTTTEEEEEEEEEEEEEE---TTTEEEECHH-HHTTCSEEEEECTT-SCEEEEEEEEEET
T ss_pred HHHHhCCcEEEEEEEec--CccCCCccccccEEEEEEe---CCCEEEECHH-HcCCCCEEEEEeCC-CCEEEEEEEEECC
Confidence 77889999999987543 1334433445789999999 6789999955 56677889999998 9999999999999
Q ss_pred CCcEEEEEECCC-CCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCC--cc--c
Q 001280 700 VHNFALIAYDPS-SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCP--RY--R 774 (1108)
Q Consensus 700 ~~dlAilk~d~~-~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~--~y--~ 774 (1108)
.+||||||++.. .+++ ++|+++..++.|++|+++|+|.+...... .|+++...+. .+ .
T Consensus 93 ~~DlAllkl~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~~~~~~v~---------~G~vs~~~~~~~~~g~~ 155 (325)
T 1lcy_A 93 VADIATLRIQTKEPLPT--------LPLGRSADVRQGEFVVAMGSPFALQNTIT---------SGIVSSAQRPARDLGLP 155 (325)
T ss_dssp TTTEEEEECCCSSCCCC--------CCBCCGGGCCTTCEEEECCCTTSSSSCCE---------EEEBCSCSCC-------
T ss_pred CCCEEEEEEcCCCCCce--------EEecccccCCCCCEEEEEECCCCCCCcEE---------eEEEecccccccccCCC
Confidence 999999999754 4444 88988767899999999999998754333 4444443321 11 1
Q ss_pred cccceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcCCCCCccccc
Q 001280 775 AMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLIN 853 (1108)
Q Consensus 775 ~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~~~~~~~~~~ 853 (1108)
.....+|++|+.+.+ +|||||+|.+|+|+||++.... . ++.|+||++.++++|+++++.+. .....
T Consensus 156 ~~~~~~i~~d~~~~~G~SGGPl~~~~G~vVGI~s~~~~---------~--g~~~aip~~~i~~~l~~~~~~~~--~~g~~ 222 (325)
T 1lcy_A 156 QTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT---------A--GISFAIPSDRLREFLHRGEKKNS--SSGIS 222 (325)
T ss_dssp --CCCCEEESSCCSTTTTTSEEEETTSCEEEEEEEEEE---------T--TEEEEEEHHHHHHHTCC-------------
T ss_pred CCCCCEEEEcCCCCCCCccccEECCCCEEEEEEeEeec---------C--CeeEEEEHHHHHHHHHHhhhccc--ccccc
Confidence 123468999999854 7999999999999999876422 1 24588999999999999876521 00011
Q ss_pred CcccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCC
Q 001280 854 GVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTC 932 (1108)
Q Consensus 854 ~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~ 932 (1108)
.+.|+ |||+.+..++...++.+++... ..++...+++|..|.++|||+++ |++||+|++|||++|.+
T Consensus 223 ~~~r~-----~lGv~~~~l~~~~~~~~~l~~~-------~~~~~~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~ 290 (325)
T 1lcy_A 223 GSQRR-----YIGVMMLTLSPSILAELQLREP-------SFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN 290 (325)
T ss_dssp ----E-----ECCEEEEECCHHHHHHHTTSCT-------TSCCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS
T ss_pred ccccc-----ccceEeecCCHHHHHhhCcccc-------ccccCCCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCC
Confidence 24455 9999999999888888877532 12334568889999999999999 99999999999999999
Q ss_pred hhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeec
Q 001280 933 FHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTD 971 (1108)
Q Consensus 933 ~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~ 971 (1108)
+.++..++.. + +++.++|.|+|+.+++++++.
T Consensus 291 ~~~l~~~l~~---~----~~v~l~v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 291 AEDVYEAVRT---Q----SQLAVQIRRGRETLTLYVTPE 322 (325)
T ss_dssp HHHHHHHHTT---C----SSEEEEEEETTEEEEEEECCE
T ss_pred HHHHHHHHhC---C----CeEEEEEEECCEEEEEEEEEe
Confidence 9999988832 3 679999999999999988764
No 20
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=100.00 E-value=7.1e-34 Score=324.66 Aligned_cols=303 Identities=21% Similarity=0.222 Sum_probs=143.6
Q ss_pred cccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEee
Q 001280 619 FAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH 698 (1108)
Q Consensus 619 ~~~~~~~~S~V~V~~~~~~~~~~dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d 698 (1108)
..++++.+|+|+|.+..+ ..+++.......||||||+ ++||||||+|+| .++..+.|++.+ +..++|++++.|
T Consensus 18 ~~~~~~~~sVV~I~~~~~--~~~~~~~~~~~~GSG~iI~---~~G~ILTaaHvv-~~~~~i~V~~~~-g~~~~a~~~~~d 90 (332)
T 3num_A 18 DVVEKIAPAVVHIELFRK--LPFSKREVPVASGSGFIVS---EDGLIVTNAHVV-TNKHRVKVELKN-GATYEAKIKDVD 90 (332)
T ss_dssp HHHHHHGGGEEEEEEEEE--CTTSSCEEEEEEEEEEEEE---TTTEEEECTTTC-CTTSEEEEEETT-SCEEEEEEEEEE
T ss_pred HHHHHhcCcEEEEEEEec--cccCCCcceeeeEEEEEEe---CCCEEEEChHHc-CCCCEEEEEECC-CCEEEEEEEEec
Confidence 378899999999999775 2455555667899999999 679999996654 567889999998 999999999999
Q ss_pred CCCcEEEEEECCC-CCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCcccccc
Q 001280 699 PVHNFALIAYDPS-SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMN 777 (1108)
Q Consensus 699 p~~dlAilk~d~~-~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~ 777 (1108)
+.+||||||++.. .+++ +.|+++..++.|+.|+++|+|.+.......+.++... . ......+....
T Consensus 91 ~~~DlAlL~l~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~----~-~~~~~~~~~~~ 157 (332)
T 3num_A 91 EKADIALIKIDHQGKLPV--------LLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQ----R-GGKELGLRNSD 157 (332)
T ss_dssp TTTTEEEEEECCSSCCCC--------CCBCCTTSCCTTCEEEEECC-----CCEEEEEEEEC------------------
T ss_pred CCCCeEEEEEcCCCCCce--------eeecCcccCCCCCEEEEEECCCCCCcceeeeEEEeec----c-cccccCcCCCc
Confidence 9999999999754 4443 7888777799999999999999886555555554221 0 00112233334
Q ss_pred ceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcCCCCCcccccCcc
Q 001280 778 MEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGVK 856 (1108)
Q Consensus 778 ~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~~~~~~~~~~~v~ 856 (1108)
..+|++|+.+++ +|||||+|.+|+|+||+++...+ ++.|+||++.++++++++.+..... ..-+.
T Consensus 158 ~~~i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~~-----------g~~~aip~~~i~~~l~~~~~~~~~g---~~~~~ 223 (332)
T 3num_A 158 MDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVTA-----------GISFAIPSDKIKKFLTESHDRQAKG---KAITK 223 (332)
T ss_dssp -CCEEESSCCCTTTTTSEEEETTSCEEEEEEEEEET-----------TEEEEEEHHHHHHHHHHHCC-------------
T ss_pred CCEEEEECCcCCCCcHHHhhCCCCcEEEEEeeEecc-----------cceEEECHHHHHHHHHHHhhhhccC---ccccc
Confidence 577999999854 79999999999999998864322 3458899999999999986421000 00034
Q ss_pred cCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCChhH
Q 001280 857 RPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHD 935 (1108)
Q Consensus 857 r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~d 935 (1108)
|+ |||+.+..++...++.++.... ..+....+++|..|.++|||+++ |++||+|++|||++|.++.+
T Consensus 224 r~-----~lGi~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~ 291 (332)
T 3num_A 224 KK-----YIGIRMMSLTSSKAKELKDRHR-------DFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAND 291 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-----ccceEEEecCHHHhhhhhhhcc-------ccCCCCCceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHHH
Confidence 55 9999998887766655543211 12233467889999999999999 99999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccC
Q 001280 936 IENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRD 974 (1108)
Q Consensus 936 l~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~ 974 (1108)
+..++. .+ ++++++|.|+|+++++++++....
T Consensus 292 ~~~~l~---~~----~~v~l~v~R~g~~~~~~v~p~~~~ 323 (332)
T 3num_A 292 VSDVIK---RE----STLNMVVRRGNEDIMITVIPEEID 323 (332)
T ss_dssp ---------------------------------------
T ss_pred HHHHHh---CC----CeEEEEEEECCEEEEEEEEEeeec
Confidence 988773 23 679999999999999888876543
No 21
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=99.97 E-value=6.7e-30 Score=277.84 Aligned_cols=203 Identities=20% Similarity=0.321 Sum_probs=157.2
Q ss_pred cCchhHHHHHHHhCCceEEEEEeeee------------ccCC------CCCCccEEEEEEEeCCCcEEEEcccccCCCCe
Q 001280 33 ATADDWRKALNKVVPAVVVLRTTACR------------AFDT------EAAGASYATGFVVDKRRGIILTNRHVVKPGPV 94 (1108)
Q Consensus 33 ~~~~~~~~~~~~~~~sVV~I~~~~~~------------~~d~------~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~ 94 (1108)
...++|.++++++.||||+|.+.... .|+. .....+.||||+|++++||||||+|||. +..
T Consensus 10 ~~~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHvv~-~a~ 88 (245)
T 3sti_A 10 APLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-QAQ 88 (245)
T ss_dssp -CCCBSHHHHHHHGGGEEEC----------------------------------CCEEEEEETTTTEEEECGGGC-----
T ss_pred CCCCCHHHHHHHhCCceEEEEEEEeeccccccchhhhhhccccccccccccccceEEEEEEeCCCCEEEEcHHHhC-CCC
Confidence 44468999999999999999987532 1221 1223578999999984499999999999 567
Q ss_pred EEEEEecCCeEEeEEEEEEcCCCceEEEEECC-CCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecC
Q 001280 95 VAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDR 173 (1108)
Q Consensus 95 ~~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d~-~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~ 173 (1108)
.+.+++.+++.++|++++.|+.+||||||++. ..++++.+.. +..+++|++|+++|||.+...+++.|+|++..+
T Consensus 89 ~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~l~~----s~~~~~G~~v~aiG~P~g~~~~vt~G~vs~~~~ 164 (245)
T 3sti_A 89 KISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR 164 (245)
T ss_dssp CEEEECTTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTBEEEEEECGGGSCCEEEEEEEEECSS
T ss_pred EEEEEECCCCEEEEEEEEecCCCCEEEEEeccCCCCceeeecC----cCCCCCCCEEEEEECCCCCCCcEEeeEEeeecc
Confidence 89999999999999999999999999999964 4455444443 567899999999999999999999999999987
Q ss_pred CCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHHHhcC
Q 001280 174 DAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERR 246 (1108)
Q Consensus 174 ~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l~~~~ 246 (1108)
.. +....+.+ +|++++.+.+|+|||||||.+|+||||+++.... .+++|+||++.+++++++|.+.+
T Consensus 165 ~~--~~~~~~~~----~i~tda~i~~G~SGGPLvn~~G~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g 235 (245)
T 3sti_A 165 SG--LNLEGLEN----FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG 235 (245)
T ss_dssp CS--SCCTTCSS----CEEESSCCCTTTTTSEEECTTSCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHH
T ss_pred cc--cCCCCccC----EEEEcCCcCCCcchhHeecCCCeEEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHHcC
Confidence 62 22233333 5999999999999999999999999999886643 47899999999999999998877
No 22
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=99.96 E-value=4e-29 Score=271.23 Aligned_cols=211 Identities=21% Similarity=0.359 Sum_probs=162.2
Q ss_pred hhHHHHHHHhCCceEEEEEeeee---------------ccCCC----CCC-ccEEEEEEEeCCCcEEEEcccccCCCCeE
Q 001280 36 DDWRKALNKVVPAVVVLRTTACR---------------AFDTE----AAG-ASYATGFVVDKRRGIILTNRHVVKPGPVV 95 (1108)
Q Consensus 36 ~~~~~~~~~~~~sVV~I~~~~~~---------------~~d~~----~~~-~~~GSGfvV~~~~G~ILTn~HVV~~~~~~ 95 (1108)
.++.++++++.||||+|.+.... .|+.. ... .+.||||+|++ +||||||+||+. +...
T Consensus 4 ~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsG~iI~~-~g~ILTnaHvv~-~~~~ 81 (239)
T 1l1j_A 4 SPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDP-EGYILTNYHVVG-GADN 81 (239)
T ss_dssp CHHHHHHHHHGGGEEEEEEECC--CCCCCHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEET-TTEEEEEHHHHS-SCSS
T ss_pred hhHHHHHHHhCCCEEEEEEEEeecccccccccchhhhhhccccccccccccCceEEEEEEeC-CCEEEEChHHhC-CCCE
Confidence 57899999999999999987532 11211 012 57899999997 799999999998 4567
Q ss_pred EEEEecCCeEEeEEEEEEcCCCceEEEEECC--CCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecC
Q 001280 96 AEAMFVNREEIPVYPIYRDPVHDFGFFRYDP--SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDR 173 (1108)
Q Consensus 96 ~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d~--~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~ 173 (1108)
+.|++.+++.+++++++.|+.+||||||++. ..++++.+.. +..+++|++|+++|||.+...+++.|++++..+
T Consensus 82 i~V~~~~g~~~~a~vv~~d~~~DlAllkl~~~~~~~~~~~l~~----s~~~~~G~~v~~iG~p~g~~~~vt~Givs~~~r 157 (239)
T 1l1j_A 82 ITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGD----SDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNR 157 (239)
T ss_dssp CEEECTTSCEEEBCCCEEETTTTEEEEEBCCSSSCCCCCEECC----GGGCCTTCEEEEEECTTSSSCEEEEEEEEEEEE
T ss_pred EEEEECCCCEEEEEEEEEcCCCCEEEEEEcCCCCCCceEEecC----ccCCccccEEEEEECCCCCCCcEEEEEEecccc
Confidence 8999999999999999999999999999986 4455555543 457899999999999999888999999999877
Q ss_pred CCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccCC---CCcccccChHHHHHHHHHHHhcCCccc
Q 001280 174 DAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS---SASAFFLPLERVVRALRFLQERRDCNI 250 (1108)
Q Consensus 174 ~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~---~~~~falPi~~i~~~l~~l~~~~~~~~ 250 (1108)
..+... . ......+|++++.+.+|+|||||+|.+|+||||++++... .+++|+||++.+++++++|.+++
T Consensus 158 ~~~~~~--~-~~~~~~~i~tda~i~~G~SGGPLv~~~G~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g---- 230 (239)
T 1l1j_A 158 RIPKPD--G-SGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQK---- 230 (239)
T ss_dssp EEECTT--S-SCEEEEEEEESSCCCTTTTTSEEECSSSEEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGCC------
T ss_pred ccccCC--C-ccccCCEEEECCCCCCCCccHHhccCCCeEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHHHCC----
Confidence 532111 0 0011347999999999999999999999999999887642 37899999999999999998877
Q ss_pred ccccccccCCCccCe
Q 001280 251 HNWEAVSIPRGTLQV 265 (1108)
Q Consensus 251 ~~~~~~~v~rg~lg~ 265 (1108)
++.|||||+
T Consensus 231 ------~v~r~~lGv 239 (239)
T 1l1j_A 231 ------KVEKAYLGV 239 (239)
T ss_dssp ---------------
T ss_pred ------CCccceeCc
Confidence 789999985
No 23
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=99.95 E-value=1.3e-27 Score=259.86 Aligned_cols=203 Identities=17% Similarity=0.291 Sum_probs=167.4
Q ss_pred ccCchhHHHHHHHhCCceEEEEEeeeeccC-CCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEE
Q 001280 32 VATADDWRKALNKVVPAVVVLRTTACRAFD-TEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYP 110 (1108)
Q Consensus 32 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~d-~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~v 110 (1108)
.....++.++++++.+|||+|.......+. ......+.||||+|++ +||||||+||+. +...+.+.+.+++.+++++
T Consensus 16 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~GsG~ii~~-~G~IlTaaHvv~-~~~~~~V~~~~g~~~~a~v 93 (237)
T 3lgi_A 16 DETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ-RGYIITNKHVIN-DADQIIVALQDGRVFEALL 93 (237)
T ss_dssp TCCCCBCHHHHHHHGGGEEEEEEECCTTTCTTSCCEEEEEEEEEEET-TTEEEEEHHHHT-TCSEEEEECTTSCEEEEEE
T ss_pred ccCCcCHHHHHHHhCCcEEEEEEEecccCcccccccceEEEEEEEeC-CCEEEEeeeecC-CCCEEEEEeCCCCEEEEEE
Confidence 344567899999999999999997643322 2233457899999997 799999999999 5678999999999999999
Q ss_pred EEEcCCCceEEEEECCCC-cccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccce
Q 001280 111 IYRDPVHDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTF 189 (1108)
Q Consensus 111 v~~d~~~DlAlLk~d~~~-~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~ 189 (1108)
++.|+.+||||||++... ++++++.. +..+++|+.|+++|||.+...+++.|.++...+.... ...+ ..
T Consensus 94 v~~d~~~DlAll~l~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~~~~~~~~~g~vs~~~~~~~~--~~~~----~~ 163 (237)
T 3lgi_A 94 VGSDSLTDLAVLKINATGGLPTIPINA----RRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLN--PTGR----QN 163 (237)
T ss_dssp EEEETTTTEEEEECCCSSCCCCCCCCT----TCCCCTTBEEEEEECGGGSCSEEEEEEEEEECCSSCC--TTSC----SC
T ss_pred EEEcCCCCEEEEEecCCCCCceEeccC----cccCCCCCEEEEEECCCCCCCcEEEEEEEeccccccc--CCCc----CC
Confidence 999999999999998654 44433332 5678999999999999999999999999998875321 1122 23
Q ss_pred EEEEeeecCCCCCCCceecccCcEEEEeecccC-------CCCcccccChHHHHHHHHHHHhcC
Q 001280 190 YMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS-------SSASAFFLPLERVVRALRFLQERR 246 (1108)
Q Consensus 190 ~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~-------~~~~~falPi~~i~~~l~~l~~~~ 246 (1108)
++++++.+.+|+|||||||.+|+||||++.... ..+++|+||++.+++++++|.+.+
T Consensus 164 ~i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~~g 227 (237)
T 3lgi_A 164 FLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 227 (237)
T ss_dssp CEEECSCCCTTCTTCEEECTTCCEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHHHS
T ss_pred EEEEcCccCCCCchHHeeCCCCeEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999987543 246899999999999999999887
No 24
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=99.95 E-value=5.7e-28 Score=261.36 Aligned_cols=204 Identities=18% Similarity=0.279 Sum_probs=165.8
Q ss_pred CccCchhHHHHHHHhCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEE
Q 001280 31 NVATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYP 110 (1108)
Q Consensus 31 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~v 110 (1108)
.......+.++++++.+|||+|......+|.......+.||||+|++ +||||||+||+. +...+.+.+.+++.+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~-~G~VLTaaHvv~-~~~~i~V~~~~g~~~~a~v 103 (231)
T 3tjo_A 26 LRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSE-DGLIVTNAHVVT-NKHRVKVELKNGATYEAKI 103 (231)
T ss_dssp HHHHSCHHHHHHHHHGGGEEEEEEEEECTTSSCEEEEEEEEEEECST-TCEEEEETTTCC-SSSEEEEECTTSCEEEEEE
T ss_pred ccchhhHHHHHHHHhcCcEEEEEEEeccccCCCccccceEEEEEEeC-CCEEEEchhccc-CCceEEEEcCCCCEEEEEE
Confidence 34556799999999999999999987666655555558899999997 799999999999 5678999999999999999
Q ss_pred EEEcCCCceEEEEECC-CCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccce
Q 001280 111 IYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTF 189 (1108)
Q Consensus 111 v~~d~~~DlAlLk~d~-~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~ 189 (1108)
++.|+.+||||||++. ..++++.+.. +..+++|+.|+++|||.+...+++.|.++...+..... .+......
T Consensus 104 ~~~d~~~DlAlL~l~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~~~---~~~~~~~~ 176 (231)
T 3tjo_A 104 KDVDEKADIALIKIDHQGKLPVLLLGR----SSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL---GLRNSDMD 176 (231)
T ss_dssp EEEETTTTEEEEECCCSSCCCCCCBCC----GGGCCTTCEEEEEEEEETTEEEEEEEEEEECC----------------C
T ss_pred EEecCCCCEEEEEecCCCCCCceecCC----cCCCCCCCEEEEEECCCCCCCceeeEEEeecccccccc---ccCCCccc
Confidence 9999999999999984 3444444433 56789999999999999988899999999987754321 12222234
Q ss_pred EEEEeeecCCCCCCCceecccCcEEEEeecccCCCCcccccChHHHHHHHHHHHh
Q 001280 190 YMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQE 244 (1108)
Q Consensus 190 ~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~~~~falPi~~i~~~l~~l~~ 244 (1108)
++++++.+.+|+|||||||.+|+||||++++.. .+.+|+||++.++++|+++++
T Consensus 177 ~i~~da~i~~G~SGGPLv~~~G~vVGI~s~~~~-~g~~~aip~~~i~~~l~~~~~ 230 (231)
T 3tjo_A 177 YIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT-AGISFAIPSDKIKKFLTESHD 230 (231)
T ss_dssp CEEESSCCCTTTTTSEEECTTSCEEEEEEEEEE-TTEEEEEEHHHHHHHHHHHHT
T ss_pred EEEEcCCcCCCCchhHeecCCCeEEEEEeEEec-CCeEEEEEHHHHHHHHHHHhh
Confidence 699999999999999999999999999987653 579999999999999999875
No 25
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=99.92 E-value=3.3e-24 Score=233.13 Aligned_cols=193 Identities=20% Similarity=0.275 Sum_probs=154.0
Q ss_pred HHHHHHHhCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEcCCC
Q 001280 38 WRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVH 117 (1108)
Q Consensus 38 ~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d~~~ 117 (1108)
..++++++.+|||+|..... .....+.||||+|+ +||||||+||+. +...+.+.+.+ ..+++++++.|+.+
T Consensus 33 ~~~~~~~~~~svV~I~~~~~-----~~~~~~~GsG~iI~--~~~VlTaaH~v~-~~~~~~V~~~~-~~~~~~~v~~~~~~ 103 (237)
T 3k6y_A 33 NNPVVAATEPSVVKIRSLAP-----RCQKVLEGTGFVIS--PDRVMTNAHVVA-GSNNVTVYAGD-KPFEATVVSYDPSV 103 (237)
T ss_dssp GCHHHHHHGGGEEEEEEEEG-----GGTEEEEEEEEEEE--TTEEEECGGGTT-TCSEEEEEETT-EEEECEEEEEETTT
T ss_pred cHHHHHHhcCCEEEEEEEec-----CCCcceeEEEEEEE--CCEEEECHHHcC-CCceEEEEECC-cEEEEEEEEEcCCC
Confidence 36789999999999998642 12345789999999 589999999998 56678999988 58999999999999
Q ss_pred ceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCC--CCCCCCCcccccceEEEEee
Q 001280 118 DFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDA--PHYKKDGYNDFNTFYMQAAS 195 (1108)
Q Consensus 118 DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~--~~~~~~~~~~~~~~~i~~~a 195 (1108)
||||||++...++ +++|.+..++.|+.++++|||.+...+...|.++...+.. ..|.... .....++++++
T Consensus 104 DiAll~l~~~~~~-----~~~l~~~~~~~G~~v~v~G~p~g~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 176 (237)
T 3k6y_A 104 DVAILAVPHLPPP-----PLVFAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPE--PVTRDVYTIRA 176 (237)
T ss_dssp TEEEEECTTCCSC-----CCCBCSSCCCTTCEEEEEECGGGCSCEEEEEEEEEEEEEEECCTTCCSS--CEEEEEEEEES
T ss_pred CEEEEEeCCCCCC-----ceecCCCCCCCCCEEEEEECCCCCCCccceeEEEeeEeecccccccCCC--cccccEEEecC
Confidence 9999999855444 4444466789999999999999988888888777654321 1121110 02335789999
Q ss_pred ecCCCCCCCceecccCcEEEEeecccCC-CCcccccChHHHHHHHHHHHhcC
Q 001280 196 GTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALRFLQERR 246 (1108)
Q Consensus 196 ~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falPi~~i~~~l~~l~~~~ 246 (1108)
.+.+|+|||||+|.+|+||||+++.... .+.+|+||++.++++|+++....
T Consensus 177 ~~~~GdSGGPLv~~~G~vvGI~s~~~~~~~~~~~aip~~~v~~~l~~~~~~~ 228 (237)
T 3k6y_A 177 DVEQGDSGGPLIDLNGQVLGVVFGAAIDDAETGFVLTAGEVAGQLAKIGATQ 228 (237)
T ss_dssp CCCTTCTTCEEECTTSCEEEEEEEECSSSTTEEEEEEHHHHHGGGGGTTCCS
T ss_pred ccCCCccHHHEECCCCEEEEEEEeeccCCCcEEEEEEHHHHHHHHHHccCCC
Confidence 9999999999999999999999886644 57899999999999999996655
No 26
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=99.91 E-value=4.4e-24 Score=232.05 Aligned_cols=200 Identities=19% Similarity=0.210 Sum_probs=140.4
Q ss_pred cccccccccEEEEEEEcCcc----------cccCCc------ccceeeEEEEEEEeeCCc-eEEEEeCceecCCCceEEE
Q 001280 619 FAESVIEPTLVMFEVHVPPS----------CMIDGV------HSQHFFGTGVIIYHSQSM-GLVVVDKNTVAISASDVML 681 (1108)
Q Consensus 619 ~~~~~~~~S~V~V~~~~~~~----------~~~dg~------~~~~~~GsG~iId~~~~~-G~IlTnr~~V~~~~~~i~V 681 (1108)
.+++++.+|||.|.+..... ..++.. ......||||||+ ++ ||||||+| |+.++..+.|
T Consensus 17 ~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~---~~~G~IlTnaH-vv~~a~~i~V 92 (245)
T 3sti_A 17 PMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIIN---ASKGYVLTNNH-VINQAQKISI 92 (245)
T ss_dssp HHHHHHGGGEEEC----------------------------------CCEEEEEE---TTTTEEEECGG-GC----CEEE
T ss_pred HHHHHhCCceEEEEEEEeeccccccchhhhhhccccccccccccccceEEEEEEe---CCCCEEEEcHH-HhCCCCEEEE
Confidence 38899999999998765321 011110 1124789999999 44 99999955 5667788999
Q ss_pred EeecCCeEEeEEEEEeeCCCcEEEEEEC-CCCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccc
Q 001280 682 SFAAFPIEIPGEVVFLHPVHNFALIAYD-PSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPC 760 (1108)
Q Consensus 682 ~~~~~~~~~~a~vv~~dp~~dlAilk~d-~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~ 760 (1108)
++.+ +..++|++++.|+.+||||||++ +..+++ ++|+++..++.|++|+++|||.+.......+.|+
T Consensus 93 ~~~d-g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~--------~~l~~s~~~~~G~~v~aiG~P~g~~~~vt~G~vs--- 160 (245)
T 3sti_A 93 QLND-GREFDAKLIGSDDQSDIALLQIQNPSKLTQ--------IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVS--- 160 (245)
T ss_dssp ECTT-SCEEEEEEEEEETTTTEEEEEESSCCSCCC--------CCBCCGGGCCTTBEEEEEECGGGSCCEEEEEEEE---
T ss_pred EECC-CCEEEEEEEEecCCCCEEEEEeccCCCCce--------eeecCcCCCCCCCEEEEEECCCCCCCcEEeeEEe---
Confidence 9998 99999999999999999999995 445554 8898877799999999999999986544445554
Q ss_pred cccccCCCCCCccc-cccceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHH
Q 001280 761 AALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 838 (1108)
Q Consensus 761 ~~~~i~~~~~~~y~-~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl 838 (1108)
...+..+. ....++|++|+.+++ +|||||+|.+|+||||+++.... +....++.||||++.+++++
T Consensus 161 ------~~~~~~~~~~~~~~~i~tda~i~~G~SGGPLvn~~G~vVGI~s~~~~~------~~~~~g~~faIP~~~~~~~~ 228 (245)
T 3sti_A 161 ------ALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAP------GGGSVGIGFAIPSNMARTLA 228 (245)
T ss_dssp ------ECSSCSSCCTTCSSCEEESSCCCTTTTTSEEECTTSCEEEEEECCC------------CCCEEEEEHHHHHHHH
T ss_pred ------eecccccCCCCccCEEEEcCCcCCCcchhHeecCCCeEEEEEEeEECC------CCCcceEEEEEeHHHHHHHH
Confidence 32222111 123467999999955 79999999999999999875443 12233556899999999999
Q ss_pred HHHHcCCC
Q 001280 839 DKIISGAS 846 (1108)
Q Consensus 839 ~~l~~~~~ 846 (1108)
++|++.++
T Consensus 229 ~~l~~~g~ 236 (245)
T 3sti_A 229 QQLIDFGE 236 (245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 99998865
No 27
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=99.90 E-value=5.8e-23 Score=223.16 Aligned_cols=204 Identities=15% Similarity=0.199 Sum_probs=155.0
Q ss_pred ccccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEe
Q 001280 618 SFAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFL 697 (1108)
Q Consensus 618 ~~~~~~~~~S~V~V~~~~~~~~~~dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~ 697 (1108)
..+++++.+|+|.|.+..+.... .........||||||+ ++||||||+| |+.++.++.|++.+ +..++|++++.
T Consensus 23 ~~~~~~~~~sVV~I~~~~~~~~~-~~~~~~~~~GsG~ii~---~~G~IlTaaH-vv~~~~~~~V~~~~-g~~~~a~vv~~ 96 (237)
T 3lgi_A 23 NLAVRRAAPAVVNVYNRGLNTNS-HNQLEIRTLGSGVIMD---QRGYIITNKH-VINDADQIIVALQD-GRVFEALLVGS 96 (237)
T ss_dssp HHHHHHHGGGEEEEEEECCTTTC-TTSCCEEEEEEEEEEE---TTTEEEEEHH-HHTTCSEEEEECTT-SCEEEEEEEEE
T ss_pred HHHHHHhCCcEEEEEEEecccCc-ccccccceEEEEEEEe---CCCEEEEeee-ecCCCCEEEEEeCC-CCEEEEEEEEE
Confidence 34789999999999988763111 1223345789999999 6789999955 56778899999998 99999999999
Q ss_pred eCCCcEEEEEECCCC-CCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccc-c
Q 001280 698 HPVHNFALIAYDPSS-LGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR-A 775 (1108)
Q Consensus 698 dp~~dlAilk~d~~~-l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~-~ 775 (1108)
|+.+||||||++... +++ ++|+++..++.|+.|+++|+|++.......+.|+.+ .+..+. .
T Consensus 97 d~~~DlAll~l~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~~~~~~~~~g~vs~~---------~~~~~~~~ 159 (237)
T 3lgi_A 97 DSLTDLAVLKINATGGLPT--------IPINARRVPHIGDVVLAIGNPYNLGQTITQGIISAT---------GRIGLNPT 159 (237)
T ss_dssp ETTTTEEEEECCCSSCCCC--------CCCCTTCCCCTTBEEEEEECGGGSCSEEEEEEEEEE---------CCSSCCTT
T ss_pred cCCCCEEEEEecCCCCCce--------EeccCcccCCCCCEEEEEECCCCCCCcEEEEEEEec---------ccccccCC
Confidence 999999999998654 544 788876668999999999999987665555555521 111111 1
Q ss_pred ccceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcCCCC
Q 001280 776 MNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASG 847 (1108)
Q Consensus 776 ~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~~~~ 847 (1108)
...++|++|+.+.+ +|||||+|.+|+|+||+++..... ..+....++.||||++.+++++++|++.++.
T Consensus 160 ~~~~~i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~~~---~~~~~~~g~~~aip~~~i~~~~~~l~~~g~~ 229 (237)
T 3lgi_A 160 GRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKS---NDGETPEGIGFAIPFQLATKIMDKLIRDGRV 229 (237)
T ss_dssp SCSCCEEECSCCCTTCTTCEEECTTCCEEEEECCCCCCC---TTSCCCCSCEEEEEHHHHHHHHHHHHHHSSC
T ss_pred CcCCEEEEcCccCCCCchHHeeCCCCeEEEEEeeeeccC---CCCcCcCceEEEEEHHHHHHHHHHHHHcCCC
Confidence 23467899999954 799999999999999998754431 0011234466899999999999999998863
No 28
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=99.90 E-value=8.6e-24 Score=229.32 Aligned_cols=210 Identities=19% Similarity=0.245 Sum_probs=146.9
Q ss_pred ccccccccEEEEEEEcCccc-------------ccCCc----ccc-eeeEEEEEEEeeCCceEEEEeCceecCCCceEEE
Q 001280 620 AESVIEPTLVMFEVHVPPSC-------------MIDGV----HSQ-HFFGTGVIIYHSQSMGLVVVDKNTVAISASDVML 681 (1108)
Q Consensus 620 ~~~~~~~S~V~V~~~~~~~~-------------~~dg~----~~~-~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V 681 (1108)
+++++.||+|.|.+...... .++.. ... ...||||||+ ++||||||+| |+.++.++.|
T Consensus 9 ~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsG~iI~---~~g~ILTnaH-vv~~~~~i~V 84 (239)
T 1l1j_A 9 VVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFD---PEGYILTNYH-VVGGADNITV 84 (239)
T ss_dssp HHHHHGGGEEEEEEECC--CCCCCHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEE---TTTEEEEEHH-HHSSCSSCEE
T ss_pred HHHHhCCCEEEEEEEEeecccccccccchhhhhhccccccccccccCceEEEEEEe---CCCEEEEChH-HhCCCCEEEE
Confidence 78889999999998754210 11111 112 5789999999 5789999955 5566778999
Q ss_pred EeecCCeEEeEEEEEeeCCCcEEEEEECC--CCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEecc
Q 001280 682 SFAAFPIEIPGEVVFLHPVHNFALIAYDP--SSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNP 759 (1108)
Q Consensus 682 ~~~~~~~~~~a~vv~~dp~~dlAilk~d~--~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~ 759 (1108)
++.+ +..++|++++.|+.+||||||++. ..+++ ++|+++..++.|++|+++|+|++.......+.|+..
T Consensus 85 ~~~~-g~~~~a~vv~~d~~~DlAllkl~~~~~~~~~--------~~l~~s~~~~~G~~v~~iG~p~g~~~~vt~Givs~~ 155 (239)
T 1l1j_A 85 TMLD-GSKYDAEYIGGDEELDIAVIKIKASDKKFPY--------LEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSAT 155 (239)
T ss_dssp ECTT-SCEEEBCCCEEETTTTEEEEEBCCSSSCCCC--------CEECCGGGCCTTCEEEEEECTTSSSCEEEEEEEEEE
T ss_pred EECC-CCEEEEEEEEEcCCCCEEEEEEcCCCCCCce--------EEecCccCCccccEEEEEECCCCCCCcEEEEEEecc
Confidence 9998 999999999999999999999976 34544 889887678999999999999987654455555522
Q ss_pred ccccccCCCCCCccccccceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHH
Q 001280 760 CAALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 838 (1108)
Q Consensus 760 ~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl 838 (1108)
... +.. ... ......+|++|+++.+ +|||||+|.+|+|+||+++.... ....++.||||++.+++++
T Consensus 156 ~r~--~~~--~~~-~~~~~~~i~tda~i~~G~SGGPLv~~~G~vvGI~s~~~~~-------~~~~g~~faIP~~~~~~~~ 223 (239)
T 1l1j_A 156 NRR--IPK--PDG-SGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNP-------QEAVNLGFAIPINTVKKFL 223 (239)
T ss_dssp EEE--EEC--TTS-SCEEEEEEEESSCCCTTTTTSEEECSSSEEEEEECCCSCC-------CSCCSCEEEEEHHHHHHHH
T ss_pred ccc--ccc--CCC-ccccCCEEEECCCCCCCCccHHhccCCCeEEEEEeeeecC-------CCcCceEEEEEHHHHHHHH
Confidence 100 000 000 0012468999999855 79999999999999998874322 1123445889999999999
Q ss_pred HHHHcCCCCCcccccCcccCCCceeeeee
Q 001280 839 DKIISGASGPSLLINGVKRPMPLVRILEV 867 (1108)
Q Consensus 839 ~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv 867 (1108)
++|+++++ +.|+ |||+
T Consensus 224 ~~l~~~g~--------v~r~-----~lGv 239 (239)
T 1l1j_A 224 DTILTQKK--------VEKA-----YLGV 239 (239)
T ss_dssp GGGCC------------------------
T ss_pred HHHHHCCC--------Cccc-----eeCc
Confidence 99998876 7787 8885
No 29
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=99.87 E-value=6.8e-22 Score=213.67 Aligned_cols=194 Identities=22% Similarity=0.212 Sum_probs=144.1
Q ss_pred cccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEee
Q 001280 619 FAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH 698 (1108)
Q Consensus 619 ~~~~~~~~S~V~V~~~~~~~~~~dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d 698 (1108)
..++++.+|+|.|.+.... .+.+.......||||||+ ++||||||+|+ +.++..+.|++.+ +..++|++++.|
T Consensus 35 ~~~~~~~~sVV~I~~~~~~--~~~~~~~~~~~GSG~iI~---~~G~VLTaaHv-v~~~~~i~V~~~~-g~~~~a~v~~~d 107 (231)
T 3tjo_A 35 DVVEKIAPAVVHIELFRKL--PFSKREVPVASGSGFIVS---EDGLIVTNAHV-VTNKHRVKVELKN-GATYEAKIKDVD 107 (231)
T ss_dssp HHHHHHGGGEEEEEEEEEC--TTSSCEEEEEEEEEEECS---TTCEEEEETTT-CCSSSEEEEECTT-SCEEEEEEEEEE
T ss_pred HHHHHhcCcEEEEEEEecc--ccCCCccccceEEEEEEe---CCCEEEEchhc-ccCCceEEEEcCC-CCEEEEEEEEec
Confidence 4788999999999987652 223323334789999999 67899999665 5667889999998 999999999999
Q ss_pred CCCcEEEEEECC-CCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCcccccc
Q 001280 699 PVHNFALIAYDP-SSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMN 777 (1108)
Q Consensus 699 p~~dlAilk~d~-~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~ 777 (1108)
+.+||||||++. ..+++ ++|+++..++.|+.|+++|+|.+.......+.++... .. .....+....
T Consensus 108 ~~~DlAlL~l~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~----~~-~~~~~~~~~~ 174 (231)
T 3tjo_A 108 EKADIALIKIDHQGKLPV--------LLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQ----RG-GKELGLRNSD 174 (231)
T ss_dssp TTTTEEEEECCCSSCCCC--------CCBCCGGGCCTTCEEEEEEEEETTEEEEEEEEEEECC-----------------
T ss_pred CCCCEEEEEecCCCCCCc--------eecCCcCCCCCCCEEEEEECCCCCCCceeeEEEeecc----cc-ccccccCCCc
Confidence 999999999974 34444 7887777789999999999999875544444444211 00 0001122223
Q ss_pred ceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHc
Q 001280 778 MEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIIS 843 (1108)
Q Consensus 778 ~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~ 843 (1108)
..+|++|+.+.+ +|||||+|.+|+|+||++.... . ++.||||++.++++|+++++
T Consensus 175 ~~~i~~da~i~~G~SGGPLv~~~G~vVGI~s~~~~---------~--g~~~aip~~~i~~~l~~~~~ 230 (231)
T 3tjo_A 175 MDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT---------A--GISFAIPSDKIKKFLTESHD 230 (231)
T ss_dssp -CCEEESSCCCTTTTTSEEECTTSCEEEEEEEEEE---------T--TEEEEEEHHHHHHHHHHHHT
T ss_pred ccEEEEcCCcCCCCchhHeecCCCeEEEEEeEEec---------C--CeEEEEEHHHHHHHHHHHhh
Confidence 467899999844 6999999999999999876432 1 34588999999999999976
No 30
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=99.81 E-value=2.5e-19 Score=194.62 Aligned_cols=191 Identities=16% Similarity=0.160 Sum_probs=143.9
Q ss_pred cccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEee
Q 001280 619 FAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH 698 (1108)
Q Consensus 619 ~~~~~~~~S~V~V~~~~~~~~~~dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d 698 (1108)
..++++.+|+|+|....+. ......||||+|+ ++|||||+|+ +.+..++.|++.+ ..+++++++.|
T Consensus 35 ~~~~~~~~svV~I~~~~~~-------~~~~~~GsG~iI~----~~~VlTaaH~-v~~~~~~~V~~~~--~~~~~~~v~~~ 100 (237)
T 3k6y_A 35 PVVAATEPSVVKIRSLAPR-------CQKVLEGTGFVIS----PDRVMTNAHV-VAGSNNVTVYAGD--KPFEATVVSYD 100 (237)
T ss_dssp HHHHHHGGGEEEEEEEEGG-------GTEEEEEEEEEEE----TTEEEECGGG-TTTCSEEEEEETT--EEEECEEEEEE
T ss_pred HHHHHhcCCEEEEEEEecC-------CCcceeEEEEEEE----CCEEEECHHH-cCCCceEEEEECC--cEEEEEEEEEc
Confidence 3778999999999887651 1345789999999 7899999665 4677789999986 48999999999
Q ss_pred CCCcEEEEEECCCCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCcccc---
Q 001280 699 PVHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRA--- 775 (1108)
Q Consensus 699 p~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~--- 775 (1108)
+.+||||||++...+++ ++|.+ ..++.|+.++++|+|.+.......+.++.+. .......|..
T Consensus 101 ~~~DiAll~l~~~~~~~--------~~l~~-~~~~~G~~v~v~G~p~g~~~~~~~g~v~~~~-----~~~~~~~~~~~~~ 166 (237)
T 3k6y_A 101 PSVDVAILAVPHLPPPP--------LVFAA-EPAKTGADVVVLGYPGGGNFTATPARIREAI-----RLSGPDIYGDPEP 166 (237)
T ss_dssp TTTTEEEEECTTCCSCC--------CCBCS-SCCCTTCEEEEEECGGGCSCEEEEEEEEEEE-----EEEECCTTCCSSC
T ss_pred CCCCEEEEEeCCCCCCc--------eecCC-CCCCCCCEEEEEECCCCCCCccceeEEEeeE-----eecccccccCCCc
Confidence 99999999998555544 78873 4589999999999998876655555554322 1111122221
Q ss_pred ccceEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcCCC
Q 001280 776 MNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGAS 846 (1108)
Q Consensus 776 ~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~~~ 846 (1108)
....++++|+.+.+ +|||||+|.+|+|+||+++.... . .++.|+||++.++++|+++.++..
T Consensus 167 ~~~~~~~~~~~~~~GdSGGPLv~~~G~vvGI~s~~~~~-------~--~~~~~aip~~~v~~~l~~~~~~~~ 229 (237)
T 3k6y_A 167 VTRDVYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAID-------D--AETGFVLTAGEVAGQLAKIGATQP 229 (237)
T ss_dssp EEEEEEEEESCCCTTCTTCEEECTTSCEEEEEEEECSS-------S--TTEEEEEEHHHHHGGGGGTTCCSC
T ss_pred ccccEEEecCccCCCccHHHEECCCCEEEEEEEeeccC-------C--CcEEEEEEHHHHHHHHHHccCCCC
Confidence 23468899998843 69999999999999998764322 2 235688999999999999966543
No 31
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=99.80 E-value=5.3e-19 Score=179.44 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=100.9
Q ss_pred CccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEcCCCceEEEEECCCCcccccccCCCCCCcccC
Q 001280 66 GASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAAC 145 (1108)
Q Consensus 66 ~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d~~~~~~~~~~~l~l~~~~~~ 145 (1108)
..+.||||+| +||||||+|||. +...+.+++ +++.++|+++ .|+.+||||||++...+++ .+++|+.. .
T Consensus 19 ~~~~GSGfii---~g~IlTn~HVV~-~~~~i~V~~-dg~~~~a~vv-~d~~~DlAlLkv~~~~~~~---~~l~l~~~--~ 87 (163)
T 2w5e_A 19 PEGKGTGFFS---GNDIVTAAHVVG-NNTFVNVCY-EGLMYEAKVR-YMPEKDIAFITCPGDLHPT---ARLKLSKN--P 87 (163)
T ss_dssp TTEEEEEEEE---TTEEEEEHHHHT-TCSEEEEEE-TTEEEEEEEE-ECCSSSEEEEECCTTCCCS---CCCCBCSS--C
T ss_pred CceeEEEEEE---CCEEEecHHHhC-CCceEEEEE-CCEEEEEEEE-EECCCCEEEEEecCCCCCc---ceEEcCCC--C
Confidence 4688999999 479999999999 556788888 9999999999 8999999999998755333 33344332 2
Q ss_pred CCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccCCCC
Q 001280 146 VGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSA 225 (1108)
Q Consensus 146 ~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~~ 225 (1108)
..+.|+++|+|.+. ..++.+ ..... + ..++.++++++|||||||||.+|+||||+++.....+
T Consensus 88 ~~~~v~~~G~p~~~-~~~s~~--~~~~~--------g------~~~~~~a~i~pGnSGGPl~n~~G~VVGI~~~~~g~~g 150 (163)
T 2w5e_A 88 DYSCVTVMAYVNED-LVVSTA--AAMVY--------G------NTLSYAVRTQDGMSGAPVCDKYCRVLAVHQTNTGYTG 150 (163)
T ss_dssp CTTEEEEEEEETTE-EEEEEE--EEEEE--------T------TEEEEECSCSSCCTTCEEECTTSCEEEEEEEEETTEE
T ss_pred CCCEEEEEEeCCCC-EEEEEe--ccEEc--------C------CeEEEEEEeCCCCchhhEEcCCCEEEEEEccCccccc
Confidence 24899999999763 211111 11100 1 1367889999999999999999999999976543334
Q ss_pred cccccC
Q 001280 226 SAFFLP 231 (1108)
Q Consensus 226 ~~falP 231 (1108)
+|+|.
T Consensus 151 -g~ai~ 155 (163)
T 2w5e_A 151 -GAVII 155 (163)
T ss_dssp -EEEEC
T ss_pred -CEEEe
Confidence 66653
No 32
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.77 E-value=2.5e-18 Score=182.77 Aligned_cols=168 Identities=11% Similarity=0.025 Sum_probs=131.1
Q ss_pred CCccceEEEEeecCCCHHhHh-ccCC-CEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecc
Q 001280 895 PVRRQVLRVKGCLAGSKAENM-LEQG-DMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDV 972 (1108)
Q Consensus 895 ~~~~~~~~V~~V~~~s~A~~a-L~~G-DiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~ 972 (1108)
....++++|..|.++|||+++ |+.| |+|++|||++|.+|.++...+....++ +++.++|.|+++...+++++..
T Consensus 12 ~~~~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g----~~v~l~v~R~~~~~~~~v~l~p 87 (209)
T 3rle_A 12 GGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVE----KPVKMLIYSSKTLELRETSVTP 87 (209)
T ss_dssp TSSSEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHHHHHHHTTT----SCEEEEEEETTTCCEEEEEECC
T ss_pred CCCCCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHHHHHhcCCC----CEEEEEEEecCCceEEEEEEcc
Confidence 344578999999999999999 9999 999999999999999988777555555 8899999997644444444432
Q ss_pred cCCCCCcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcCCCC-CCEEEEECCeecCCHHHHHHHHHc
Q 001280 973 RDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYA-LQWIVEINGKRTPDLEAFVNVTKE 1051 (1108)
Q Consensus 973 ~~~~~t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~GL~~-gD~I~~VNg~~v~~l~~f~~~v~~ 1051 (1108)
... .....++|+.++......+. ..|++|..|.++|||+++||++ ||+|++|||+ +.++++|.+++++
T Consensus 88 ~~~---~~~~~~lGi~~~~~~~~~~~-------~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l~~~l~~ 156 (209)
T 3rle_A 88 SNL---WGGQGLLGVSIRFCSFDGAN-------ENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESEDLFSLIET 156 (209)
T ss_dssp CSS---SSSSSSSCEEEEEEECTTGG-------GSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCHHHHHHH
T ss_pred ccc---ccccCccceEEeecChhHcc-------ccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHHHHHHHHh
Confidence 211 11234678777643322111 1389999999999999999999 9999999998 9999999999999
Q ss_pred CCCCceEEEEEEEeCC--eEEEEEEEeCCc
Q 001280 1052 IEHGEFVRVRTVHLNG--KPRVLTLKQDLH 1079 (1108)
Q Consensus 1052 ~~~~~~v~l~~v~rdg--~~~~~~lk~d~~ 1079 (1108)
. +++.+.|+ +.|++ +.+.++++++.+
T Consensus 157 ~-~g~~v~l~-v~r~~~~~~~~v~l~p~~~ 184 (209)
T 3rle_A 157 H-EAKPLKLY-VYNTDTDNCREVIITPNSA 184 (209)
T ss_dssp T-TTSCEEEE-EEETTTTEEEEEEECCCTT
T ss_pred C-CCCeEEEE-EEECCceEEEEEEEEecCC
Confidence 7 58999999 66654 567888888654
No 33
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=99.73 E-value=1.2e-17 Score=177.81 Aligned_cols=179 Identities=21% Similarity=0.200 Sum_probs=128.7
Q ss_pred CceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCC--eEEEEEe----cCCeEEeEE-EEEEcCCCce
Q 001280 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP--VVAEAMF----VNREEIPVY-PIYRDPVHDF 119 (1108)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~--~~~~v~~----~d~~~~~a~-vv~~d~~~Dl 119 (1108)
+++|+|......+|.... ....||||+|++ +|||||+||+.+.. ..+.+.+ .+++.+.++ ++.+|+..||
T Consensus 3 ~~~~~i~~~~~~P~~v~~-~~~~c~G~lI~~--~~VLTaaHcv~~~~~~~~i~v~~~~~~~~g~~~~~~~v~~~~~~~Di 79 (210)
T 2as9_A 3 KNVTQVKDTNNFPYNGVV-SFKDATGFVIGK--NTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDI 79 (210)
T ss_dssp CCEEECSCTTSTTGGGEE-ECSSCEEEEEET--TEEEECHHHHHHCCTTCEEEESCCGGGCCSCEEEEEEEEECSSSSSC
T ss_pred CceEEeecCCcCCeEEEE-EeeeEEEEEEeC--CEEEECHhHCCccCCCCEEEEEeCcccCCCCEEEEEEEEeCCCCCcE
Confidence 345555444333332211 135699999994 69999999997432 2566653 477888884 8888999999
Q ss_pred EEEEECCCCc-------cc-ccccCCCCCCcccCCCCEEEEEecCCCCCC----eEEEEEEEEecCCCCCCCCCCccccc
Q 001280 120 GFFRYDPSAI-------QF-LNYDEIPLAPEAACVGLEIRVVGNDSGEKV----SILAGTLARLDRDAPHYKKDGYNDFN 187 (1108)
Q Consensus 120 AlLk~d~~~~-------~~-~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~----si~~G~is~~~~~~~~~~~~~~~~~~ 187 (1108)
||||++...+ .+ ..+.+++|+ ..+..|+.++++|+|.+... .+..|+++....
T Consensus 80 All~l~~~~~~~~~~~~~~~~~v~~i~l~-~~~~~g~~v~v~G~p~~~~~~~~l~~~~g~v~~~~~-------------- 144 (210)
T 2as9_A 80 SVMNIEEQAVERGPKGFNFNENVQAFNFA-KDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKD-------------- 144 (210)
T ss_dssp EEEEECSEEEEEETTEEEGGGSCCCCCBC-SCCCTTCEEEEEECSSTTTTTSCCEEEEEEEEEEET--------------
T ss_pred EEEEecCccccccccccccccccceeecC-CCCCCCCEEEEEeCCCCCCCCcceEEeeeEEccccC--------------
Confidence 9999986321 11 023455554 46789999999999986543 347788877521
Q ss_pred ceEEEEeeecCCCCCCCceecccCcEEEEeecccCC---CCcccccChHHHHHHHHHHHh
Q 001280 188 TFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS---SASAFFLPLERVVRALRFLQE 244 (1108)
Q Consensus 188 ~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~---~~~~falPi~~i~~~l~~l~~ 244 (1108)
.++++++.+.+|+|||||+|.+|+||||++.+... ...+|++|.+.++++++..+.
T Consensus 145 -~~i~~~~~~~~GdSGGPlv~~~g~lvGI~s~g~~~~~~~~~~~~~~~~~i~~f~~~~~~ 203 (210)
T 2as9_A 145 -NILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIE 203 (210)
T ss_dssp -TEEEEECCCCTTCTTCEEECTTSCEEEEECCSCCCTTCSSEEEEECCHHHHHHHHTTCC
T ss_pred -CeEEEcCccCCCCccCcEECCCCeEEEEEecccccCCccccccEEEcHHHHHHHHHhhh
Confidence 14788999999999999999999999999887643 455799999999999876543
No 34
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.70 E-value=5.5e-17 Score=172.45 Aligned_cols=150 Identities=21% Similarity=0.167 Sum_probs=121.3
Q ss_pred CCCceEEEEEecCCCcccc-CCCCC-CEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCEEEEEEE-cccccccC
Q 001280 295 GETGLLVVDSVVPGGPAHL-RLEPG-DVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGISMTVNL-VQDLHSIT 370 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~G-D~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~V~R~g~~~~~~v-~~~~~~~~ 370 (1108)
...|++| ..|.++|||++ ||++| |+|++|||++|.+|.++...+ ...+|++++++|.|++...+.++ +.....
T Consensus 14 ~~~G~~V-~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~-- 90 (209)
T 3rle_A 14 GTEGYHV-LRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNL-- 90 (209)
T ss_dssp SSEEEEE-EEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSS--
T ss_pred CCCEEEE-EEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEccccc--
Confidence 5678888 69999999999 99999 999999999999999987655 56789999999999764444444 321111
Q ss_pred CCcccccCCeEEccCCHHHhhccCcCCCeEEEE--CCCChhHHcCCCC-CCEEEEeCCeecCCHHHHHHHHHhcCCCCeE
Q 001280 371 PDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAGVPR-HAIIKKFAGEEISRLEDLISVLSKLSRGARV 447 (1108)
Q Consensus 371 ~~~~~~~~G~~~~~l~~q~~~~~~~~~~gv~v~--~~~~~a~~aGl~~-Gd~I~~Vng~~v~~l~~~~~~i~~~~~~~~v 447 (1108)
.....+.|+.+.+++++.+.. .|++|. .++|||++|||++ ||+|++|||+ +.++++|.+++++. .++.+
T Consensus 91 -~~~~~~lGi~~~~~~~~~~~~-----~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l~~~l~~~-~g~~v 162 (209)
T 3rle_A 91 -WGGQGLLGVSIRFCSFDGANE-----NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESEDLFSLIETH-EAKPL 162 (209)
T ss_dssp -SSSSSSSCEEEEEEECTTGGG-----SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCHHHHHHHT-TTSCE
T ss_pred -ccccCccceEEeecChhHccc-----cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHHHHHHHHhC-CCCeE
Confidence 113457888888877655443 568887 5899999999999 9999999998 99999999999997 67889
Q ss_pred EEEEeeec
Q 001280 448 PIEYSSYT 455 (1108)
Q Consensus 448 ~l~~~~~~ 455 (1108)
.|++.|-.
T Consensus 163 ~l~v~r~~ 170 (209)
T 3rle_A 163 KLYVYNTD 170 (209)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99998753
No 35
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.67 E-value=1.3e-15 Score=159.93 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=118.2
Q ss_pred cceEEEEeecCCCHHhHh--ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCC--EEEEEEEeeccc
Q 001280 898 RQVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQG--REIELQVGTDVR 973 (1108)
Q Consensus 898 ~~~~~V~~V~~~s~A~~a--L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g--~~~~v~v~~~~~ 973 (1108)
..+++|..|.++|||+++ |+.||+|++|||+++.+|.++.........+ +.+.++|.|++ ....+++.+...
T Consensus 34 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g----~~v~l~v~r~~~~~~~~~~v~l~~~ 109 (196)
T 3gsl_A 34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG----SIVRLYVMRRKPPAEKVMEIKLIKG 109 (196)
T ss_dssp CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSC----SEEEEEEEEECCCCEEEEEEEEEEB
T ss_pred CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CcEEEEEEecCCCccccEEEEEecC
Confidence 357889999999999987 9999999999999999998877766555555 78999999977 455556665543
Q ss_pred CCCCCcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHH
Q 001280 974 DGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTK 1050 (1108)
Q Consensus 974 ~~~~t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~ 1050 (1108)
.. -+|+.+..... ....+ ...|++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++
T Consensus 110 ~~--------~lG~~~~~~~~----~~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 176 (196)
T 3gsl_A 110 PK--------GLGFSIAGGVG----NQHIP-GDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 176 (196)
T ss_dssp TT--------BSCEEEEESBT----SCSBT-TBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHH
T ss_pred CC--------CceEEEEccCC----CcCCC-CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHH
Confidence 31 23444432210 00011 12489999999999999999 99999999999999999 999999998
Q ss_pred cCCCCceEEEEEEEeCCeEE
Q 001280 1051 EIEHGEFVRVRTVHLNGKPR 1070 (1108)
Q Consensus 1051 ~~~~~~~v~l~~v~rdg~~~ 1070 (1108)
+ .++.+.|. +.|++...
T Consensus 177 ~--~~~~v~l~-v~R~~~~~ 193 (196)
T 3gsl_A 177 N--TYDVVYLK-VAKPSNAE 193 (196)
T ss_dssp S--CCEEEEEE-EEEESCCC
T ss_pred c--CCCeEEEE-EeCCCCcc
Confidence 6 37889998 78877643
No 36
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...
Probab=99.67 E-value=1.8e-16 Score=166.48 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=118.3
Q ss_pred EEEEEEEeCC-CcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEc-CCCceEEEEECCCC--cccccc--cCCCCC-C
Q 001280 69 YATGFVVDKR-RGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSA--IQFLNY--DEIPLA-P 141 (1108)
Q Consensus 69 ~GSGfvV~~~-~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d-~~~DlAlLk~d~~~--~~~~~~--~~l~l~-~ 141 (1108)
-.+||++... .+|||||.||+..+. .+. .|+ .+.++++..| |..|+|+||++... .+.+.+ ..+++. .
T Consensus 17 CT~Gf~v~~~~~~~ilTa~Hc~~~~~-~v~---~~~-~~~g~vv~~~~~~~D~Avi~i~~~~~~~~~v~~~g~~~~v~g~ 91 (198)
T 2h5c_A 17 CSVGFSVTRGATKGFVTAGHCGTVNA-TAR---IGG-AVVGTFAARVFPGNDRAWVSLTSAQTLLPRVANGSSFVTVRGS 91 (198)
T ss_dssp EECCEEEEETTEEEEEECGGGCCTTC-EEE---ETT-EEEEEEEEEECSBSCEEEEEECTTSEEEEEEEETTEEEECCBC
T ss_pred CCcCEEEecCCeeEEEECcccCCCCC-EEE---eCC-cEEEEEEecCCCCCCEEEEEeCCCCccCceEecCCceEEecCc
Confidence 4589999641 369999999998543 343 454 8889999999 99999999998653 122111 001222 5
Q ss_pred cccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeeccc
Q 001280 142 EAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1108)
Q Consensus 142 ~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1108)
..+++|+.|..+|+|.+ .++|+|+.+++... |....+ ..++|+++.+.+|+|||||+|.+|++|||++++.
T Consensus 92 ~~~~vG~~V~~~G~~tg----~t~G~V~~~~~~~~-~~~g~~----~~~i~t~~~~~~GDSGGPl~~~~g~~vGI~s~~~ 162 (198)
T 2h5c_A 92 TEAAVGAAVCRSGRTTG----YQCGTITAKNVTAN-YAEGAV----RGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGN 162 (198)
T ss_dssp CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-ETTEEE----EEEEEECSCCBTTCTTCEEECTTCBEEEEEEEEC
T ss_pred ccCCCCCeEEEeecCcc----eEEEEEEeeeeEEE-eCCCeE----eeeEEecccCCCCcceeEEEeeCCEEEEEEEeec
Confidence 67899999999999887 58999999987542 221112 2469999999999999999999999999998874
Q ss_pred -C----------CCCcccccChHHHHHHH
Q 001280 222 -S----------SSASAFFLPLERVVRAL 239 (1108)
Q Consensus 222 -~----------~~~~~falPi~~i~~~l 239 (1108)
. ..+.+|++|++.+++.+
T Consensus 163 ~~~~~~~c~~~~~~g~~f~~Pi~~vl~~~ 191 (198)
T 2h5c_A 163 VQSNGNNCGIPASQRSSLFERLQPILSQY 191 (198)
T ss_dssp CCTTSBSTTSCGGGCCEEEEEHHHHHHHH
T ss_pred CccCCCccccccCCceEEEEEHHHHHHHC
Confidence 1 12588999999998765
No 37
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.65 E-value=1.3e-16 Score=157.12 Aligned_cols=121 Identities=24% Similarity=0.389 Sum_probs=106.2
Q ss_pred CCcccccChHHHHHHHHHHHhcCCcccccccccccCCCccCeEEEEcCh---hHHHhcCCChhHHHhhhcCCCCCCCceE
Q 001280 224 SASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHKGF---DETRRLGLQSATEQMVRHASPPGETGLL 300 (1108)
Q Consensus 224 ~~~~falPi~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~lg~~~~~~~~---~~~r~lGl~~~~~~~~~~~~~~~~~G~l 300 (1108)
.|++|+||++.+++++++|.+++ .+.|+|||+.++.++. +.++.|||+.. ...|++
T Consensus 2 ~GigFAIP~~~~~~v~~~L~~~G----------~v~r~~LGv~~~~~~~~~~~~~~~lgl~~~-----------~~~g~~ 60 (134)
T 2l97_A 2 EGLGFAIPANDAINIIEQLEKNG----------KVTRPALGIQMVNLSNVSTSDIRRLNIPSN-----------VTSGVI 60 (134)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCC----------CSSCCCCCCEEEESSSSCHHHHHHHSSCSS-----------SCSCEE
T ss_pred CcEEEEeEHHHHHHHHHHHHHcC----------CEeeeEeeEEEEECCchhHHHHHHcCCCcC-----------CCCCEE
Confidence 47899999999999999998887 7899999999998765 67888999721 247877
Q ss_pred EEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEE-cccc
Q 001280 301 VVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNL-VQDL 366 (1108)
Q Consensus 301 Vv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~v-~~~~ 366 (1108)
| ..|.++|||+.||++||+|++|||+++.++.++..++.. .+|++++|+|.|+|+.+++++ +..+
T Consensus 61 V-~~V~~~spA~aGL~~GD~I~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~ 127 (134)
T 2l97_A 61 V-RSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNKL 127 (134)
T ss_dssp E-EECSTTSGGGTTSCSSCEEEEETTEECCCHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECCCC
T ss_pred E-EEECCCCchHHCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEccc
Confidence 7 699999999989999999999999999999999988865 589999999999999999998 6654
No 38
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=99.63 E-value=3.8e-15 Score=151.07 Aligned_cols=126 Identities=14% Similarity=0.076 Sum_probs=93.4
Q ss_pred ceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEeeCCCcEEEEEECCCCCCcccccceecccc
Q 001280 647 QHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYDPSSLGVAGASVVRAAEL 726 (1108)
Q Consensus 647 ~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~dp~~dlAilk~d~~~l~~~~~~~v~~~~l 726 (1108)
....||||+| +||||||+ ||+.++..+.|++ + ++.++|+++ .|+.+||||||++...++. .+++|
T Consensus 19 ~~~~GSGfii-----~g~IlTn~-HVV~~~~~i~V~~-d-g~~~~a~vv-~d~~~DlAlLkv~~~~~~~------~~l~l 83 (163)
T 2w5e_A 19 PEGKGTGFFS-----GNDIVTAA-HVVGNNTFVNVCY-E-GLMYEAKVR-YMPEKDIAFITCPGDLHPT------ARLKL 83 (163)
T ss_dssp TTEEEEEEEE-----TTEEEEEH-HHHTTCSEEEEEE-T-TEEEEEEEE-ECCSSSEEEEECCTTCCCS------CCCCB
T ss_pred CceeEEEEEE-----CCEEEecH-HHhCCCceEEEEE-C-CEEEEEEEE-EECCCCEEEEEecCCCCCc------ceEEc
Confidence 3468999999 36999995 5667788899999 6 999999999 8999999999998755432 33678
Q ss_pred CCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccceEEEEecccCC-CCCceEEcCCeeEEEE
Q 001280 727 LPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAI 805 (1108)
Q Consensus 727 ~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi 805 (1108)
+++. ..+.|+++|+|.+. +.. ..+ .+.+ .-..++.++++++ ||||||+|.+|+||||
T Consensus 84 ~~~~---~~~~v~~~G~p~~~-~~~---s~~----~~~~-----------~g~~~~~~a~i~pGnSGGPl~n~~G~VVGI 141 (163)
T 2w5e_A 84 SKNP---DYSCVTVMAYVNED-LVV---STA----AAMV-----------YGNTLSYAVRTQDGMSGAPVCDKYCRVLAV 141 (163)
T ss_dssp CSSC---CTTEEEEEEEETTE-EEE---EEE----EEEE-----------ETTEEEEECSCSSCCTTCEEECTTSCEEEE
T ss_pred CCCC---CCCEEEEEEeCCCC-EEE---EEe----ccEE-----------cCCeEEEEEEeCCCCchhhEEcCCCEEEEE
Confidence 7764 24899999999763 211 111 1111 0124566788855 7999999999999999
Q ss_pred Eeec
Q 001280 806 WGSF 809 (1108)
Q Consensus 806 ~~~~ 809 (1108)
+.+.
T Consensus 142 ~~~~ 145 (163)
T 2w5e_A 142 HQTN 145 (163)
T ss_dssp EEEE
T ss_pred EccC
Confidence 8753
No 39
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.63 E-value=2.6e-15 Score=157.93 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=116.6
Q ss_pred ceEEEEeecCCCHHhHh--ccCCCEEEEECCEEcC--ChhHHHHHHHhccCCCCCCCeEEEEEEeCCEE--------EEE
Q 001280 899 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVT--CFHDIENACQALDKDGEDNGKLDITIFRQGRE--------IEL 966 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a--L~~GDiIlsVnG~~V~--~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~--------~~v 966 (1108)
.+++|..|.++|||+++ |+.||+|++|||+++. +|.++..++....++ +.+.++|.|+++. .++
T Consensus 36 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g----~~v~l~v~R~~~~~~~~~~~~~~v 111 (196)
T 1p1d_A 36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSIT----SKVTLEIEFDVAESVIPSSGTFHV 111 (196)
T ss_dssp CSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSS----SEEEEEEEECSCSCCBCCSSCEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC----CeEEEEEEecCCCCCCCCCCcEEE
Confidence 45779999999999987 9999999999999999 689999888655545 7899999999853 233
Q ss_pred EEeecccCCCCCcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HH
Q 001280 967 QVGTDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LE 1043 (1108)
Q Consensus 967 ~v~~~~~~~~~t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~ 1043 (1108)
.++- . ....+|+.+..+... .+ ..+++|.+|.++|||+++| |++||+|++|||+++.+ ++
T Consensus 112 ~l~~--~-------~~~~lG~~~~~~~~~------~~--~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~ 174 (196)
T 1p1d_A 112 KLPK--K-------HSVELGITISSPSSR------KP--GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSME 174 (196)
T ss_dssp EECC--C-------SSCCCCCEEECSCSS------ST--TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHH
T ss_pred EecC--C-------CCCCcCEEEECCCCC------CC--CCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence 3321 0 112357777665421 00 2378999999999999999 99999999999999999 99
Q ss_pred HHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1044 AFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1044 ~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
+|.+++++. ++.+.|. +.|++
T Consensus 175 ~~~~~l~~~--~~~v~l~-v~R~~ 195 (196)
T 1p1d_A 175 DAVQILQQC--EDLVKLK-IRKDE 195 (196)
T ss_dssp HHHHHHHHC--TTCEEEE-EECCC
T ss_pred HHHHHHHhC--CCEEEEE-EEeCC
Confidence 999999985 8889998 77775
No 40
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.60 E-value=2e-15 Score=154.52 Aligned_cols=115 Identities=24% Similarity=0.268 Sum_probs=92.3
Q ss_pred ceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCChhH-HHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccCCC
Q 001280 899 QVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHD-IENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGN 976 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~d-l~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~~~ 976 (1108)
.+++|..|.++|||+++ |+.||+|++|||+++.++.+ +...+.....+ +++.++|.|++++++++++...
T Consensus 27 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~----~~v~l~vr~~~~~~~v~l~~~~---- 98 (166)
T 1w9e_A 27 NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFG----EKITMTIRDRPFERTITMHKDS---- 98 (166)
T ss_dssp TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS----SEEEEEEECCTTCEEEEEECCT----
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC----CEEEEEEEcCCCcEEEEEecCC----
Confidence 56889999999999999 99999999999999999988 66555444454 6899999444488777776411
Q ss_pred CCcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHH
Q 001280 977 GTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLE 1043 (1108)
Q Consensus 977 ~t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~ 1043 (1108)
...+|+.+. . | +|..+.++|||+++||++||+|++|||+++.++.
T Consensus 99 -----~~~lG~~~~-------------~---g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~ 143 (166)
T 1w9e_A 99 -----TGHVGFIFK-------------N---G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLK 143 (166)
T ss_dssp -----TSCCSEEEE-------------T---T-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCC
T ss_pred -----CCcEeEEEe-------------C---C-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCC
Confidence 112355443 1 4 7999999999999999999999999999999984
No 41
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.60 E-value=1.1e-14 Score=152.74 Aligned_cols=145 Identities=15% Similarity=0.150 Sum_probs=108.4
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECC--EEEEEEE-ccccccc
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGG--ISMTVNL-VQDLHSI 369 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~V~R~g--~~~~~~v-~~~~~~~ 369 (1108)
..|++| ..|.|+|||++ | |++||+|++|||+++.+|.++.... ....|+.+.++|.|++ ....+++ +....
T Consensus 34 ~~g~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~v~l~~~~-- 110 (196)
T 3gsl_A 34 DPSIFI-TKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGP-- 110 (196)
T ss_dssp CCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEECCCCEEEEEEEEEEBT--
T ss_pred CCCEEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCCccccEEEEEecCC--
Confidence 467777 79999999999 9 9999999999999999998877554 4567899999999977 4455555 43322
Q ss_pred CCCcccccCCeEEccCCHHHhhccCcCCCeEEEE--CCCChhHHcC-CCCCCEEEEeCCeecCC--HHHHHHHHHhcCCC
Q 001280 370 TPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAG-VPRHAIIKKFAGEEISR--LEDLISVLSKLSRG 444 (1108)
Q Consensus 370 ~~~~~~~~~G~~~~~l~~q~~~~~~~~~~gv~v~--~~~~~a~~aG-l~~Gd~I~~Vng~~v~~--l~~~~~~i~~~~~~ 444 (1108)
.-.|+.+....... .+ ....|++|. .|+++|+++| |++||+|++|||+++.+ ++++++.+++. +
T Consensus 111 ------~~lG~~~~~~~~~~--~~-~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~--~ 179 (196)
T 3gsl_A 111 ------KGLGFSIAGGVGNQ--HI-PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT--Y 179 (196)
T ss_dssp ------TBSCEEEEESBTSC--SB-TTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSC--C
T ss_pred ------CCceEEEEccCCCc--CC-CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcC--C
Confidence 12455554322100 00 012578888 5999999999 99999999999999999 99999999863 4
Q ss_pred CeEEEEEeee
Q 001280 445 ARVPIEYSSY 454 (1108)
Q Consensus 445 ~~v~l~~~~~ 454 (1108)
+.+.|++.|-
T Consensus 180 ~~v~l~v~R~ 189 (196)
T 3gsl_A 180 DVVYLKVAKP 189 (196)
T ss_dssp EEEEEEEEEE
T ss_pred CeEEEEEeCC
Confidence 5555555543
No 42
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=99.59 E-value=3.3e-15 Score=162.53 Aligned_cols=171 Identities=19% Similarity=0.240 Sum_probs=117.2
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCe-EEEEEecCC-------------eEEeEEEE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPV-VAEAMFVNR-------------EEIPVYPI 111 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~-~~~v~~~d~-------------~~~~a~vv 111 (1108)
.+++|+|... ....|+||+|++ +|||||+||+.+... .+.+++.+| ..+.++.+
T Consensus 43 ~~~~v~i~~~----------~~~~c~G~lI~~--~~VLTAaHcv~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i 110 (242)
T 1agj_A 43 YNTIGNVFVK----------GQTSATGVLIGK--NTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEI 110 (242)
T ss_dssp GGGEEEEEET----------TTEEEEEEECSS--SEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEE
T ss_pred cceEEEEEEC----------CCccEEEEEEeC--CEEEEChhhcccCCCCceEEEEecCccccccccccccCCceeEEEE
Confidence 3456666542 246899999984 699999999974321 133444332 35788999
Q ss_pred EEcC---CCceEEEEECCCCc--cc-ccccCCCCC-CcccCCCCEEEEEecCCCCCCe-EEEEEEEEecCCCCCCCCCCc
Q 001280 112 YRDP---VHDFGFFRYDPSAI--QF-LNYDEIPLA-PEAACVGLEIRVVGNDSGEKVS-ILAGTLARLDRDAPHYKKDGY 183 (1108)
Q Consensus 112 ~~d~---~~DlAlLk~d~~~~--~~-~~~~~l~l~-~~~~~~G~~V~~iG~p~g~~~s-i~~G~is~~~~~~~~~~~~~~ 183 (1108)
..|+ .+||||||++.... ++ ..+.+++|. ...+..|+.++++|+|.+...+ .....+... .+
T Consensus 111 ~~~~~~~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~~~l~~~~~~~~----------~~ 180 (242)
T 1agj_A 111 LQEPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIELT----------TL 180 (242)
T ss_dssp ESCTTCTTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTSTTCCEEEEEEEC----------CG
T ss_pred EeCCCCCCCcEEEEEEcCCCccccccccccceecCccccCCCCCEEEEEeCCCCCCCccceeeeeeEe----------cC
Confidence 9998 89999999986421 00 023444443 3467899999999999876532 222222211 11
Q ss_pred ccccceEEEEeeecCCCCCCCceecccCcEEEEeecccC----CCCcccccChH-HHHHHHHHH
Q 001280 184 NDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS----SSASAFFLPLE-RVVRALRFL 242 (1108)
Q Consensus 184 ~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~----~~~~~falPi~-~i~~~l~~l 242 (1108)
.. .+++++.+.+|+|||||++.+|+||||++.+.. ..+.+|++|++ .++++|++.
T Consensus 181 ~~----~~~~~~~~c~GdSGGPl~~~~g~lvGI~s~g~~c~~~~~~~~~~~~i~~~~~~~l~~~ 240 (242)
T 1agj_A 181 SR----GLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRIINEK 240 (242)
T ss_dssp GG----SEEEECCCCGGGTTCEEECTTSEEEEEEEEEEECSSTTCEEEEEEECCHHHHHHHHHH
T ss_pred Cc----eEEEeCCcCCCCCchHhcccCCEEEEEEeccccccCcCCCceeeEEehHHHHHHHHhh
Confidence 11 267888999999999999999999999987653 24678899985 777777653
No 43
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.59 E-value=1.9e-14 Score=151.86 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=112.9
Q ss_pred ceEEEEeecCCCHHhHh--ccCCCEEEEECCEEcCCh--hHHHHHHHhccCCCCCCCeEEEEEEeCCEE----------E
Q 001280 899 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCF--HDIENACQALDKDGEDNGKLDITIFRQGRE----------I 964 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a--L~~GDiIlsVnG~~V~~~--~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~----------~ 964 (1108)
.+++|..|.++|||+++ |+.||+|++|||+++.++ .++..++ ...+ +++.++|.|+++. .
T Consensus 33 ~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~--~~~g----~~v~l~v~R~~~~~~~~g~~~~~~ 106 (200)
T 2qt5_A 33 GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLL--KNVG----ERVVLEVEYELPPVSIQGSSVMFR 106 (200)
T ss_dssp SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHH--HTCC----SEEEEEEEEECCCCCCCCSSEEEE
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH--HhCC----CeEEEEEeccCCCcccCCCcccee
Confidence 45679999999999987 999999999999999999 6666554 2334 7899999997632 4
Q ss_pred EEEEeecccCCCCCcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--C
Q 001280 965 ELQVGTDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--D 1041 (1108)
Q Consensus 965 ~v~v~~~~~~~~~t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~ 1041 (1108)
++.+++.... ..+|+.+...... ..+ ...+++|.++.++|||+++| |++||+|++|||+++. +
T Consensus 107 ~~~v~l~~~~--------~~lG~~l~~g~~~-----~~~-~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~ 172 (200)
T 2qt5_A 107 TVEVTLHKEG--------NTFGFVIRGGAHD-----DRN-KSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 172 (200)
T ss_dssp EEEEEEECBT--------TBCSEEEEEECCS-----STT-TCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred EEEEEEecCC--------CCeEEEEECCCCC-----Ccc-CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 5555553211 1234443321100 001 12489999999999999999 9999999999999999 9
Q ss_pred HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1042 LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1042 l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
++++.++++. .++.++|. +.|++..
T Consensus 173 ~~~~~~~l~~--~~~~v~l~-v~R~~~~ 197 (200)
T 2qt5_A 173 HAEAMSILKQ--CGQEATLL-IEYDVSV 197 (200)
T ss_dssp HHHHHHHHHT--TCSEEEEE-EEEEEEC
T ss_pred HHHHHHHHHc--CCCeEEEE-EEECCcc
Confidence 9999999998 48899998 7887764
No 44
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=99.59 E-value=3.3e-15 Score=157.58 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=109.6
Q ss_pred cEEEEEEEeCCCcEEEEcccccCCCC---eEEEEEe----cCCeEEeE-EEEEEcCCCceEEEEECCCCcccc----ccc
Q 001280 68 SYATGFVVDKRRGIILTNRHVVKPGP---VVAEAMF----VNREEIPV-YPIYRDPVHDFGFFRYDPSAIQFL----NYD 135 (1108)
Q Consensus 68 ~~GSGfvV~~~~G~ILTn~HVV~~~~---~~~~v~~----~d~~~~~a-~vv~~d~~~DlAlLk~d~~~~~~~----~~~ 135 (1108)
..|+||+|++ ++||||+||+.... ..+.+.+ .+++.+.+ +++.+|+.+||||||++...++.+ .+.
T Consensus 22 ~~c~G~lI~~--~~VLTaaHcv~~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~~v~ 99 (200)
T 2w7s_A 22 VGGTGVVVGK--NTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIVHVHETSTEGLNFNKNVS 99 (200)
T ss_dssp TTEEEEEEET--TEEEECHHHHHHHHHTTCCEEETCCSSSCCCCEECEEEEEECSSSSSCEEEEECSBCTTSCBGGGSCC
T ss_pred ceEEEEEEEC--CEEEEChhhcCCcccCCcEEEEEecCccCCCcEEEEEEEecCCCcceEEEEEECCCCCCccccccccc
Confidence 4699999994 69999999996321 1345543 46777887 578889999999999986532211 245
Q ss_pred CCCCCCcccCCCCEEEEEecCCCCCC----eEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccC
Q 001280 136 EIPLAPEAACVGLEIRVVGNDSGEKV----SILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQG 211 (1108)
Q Consensus 136 ~l~l~~~~~~~G~~V~~iG~p~g~~~----si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G 211 (1108)
+++|. ..+..|+.++++|+|.+... .+..|.++.... .++++++.+.+|+|||||+|.+|
T Consensus 100 pi~l~-~~~~~g~~v~v~G~p~g~~~~~~~~~~~g~v~~~~~---------------~~~~~~~~~~~GdSGGPl~~~~g 163 (200)
T 2w7s_A 100 YTKFA-DGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISG---------------TFMEFDAYAQPGNSGSPVLNSKH 163 (200)
T ss_dssp CCCBC-CCCCTTCEEEEEECTTHHHHTSCEEEEEEEEEEEET---------------TEEEECSCCCTTCTTCEEECTTS
T ss_pred ceecc-ccCCCCCEEEEEECCCCCCCccceEEeEEEEEccCC---------------CEEEEcceeCCCCccCeEECcCC
Confidence 56664 46789999999999976432 346677776421 14788889999999999999999
Q ss_pred cEEEEeecccCC--CCccccc-ChHHHHHHHH
Q 001280 212 RAVALNAGSKSS--SASAFFL-PLERVVRALR 240 (1108)
Q Consensus 212 ~vVGi~~~~~~~--~~~~fal-Pi~~i~~~l~ 240 (1108)
++|||++.+... ...+|.+ ....++++++
T Consensus 164 ~lvGI~s~g~~~~~~~~~~~v~~~~~~~~wI~ 195 (200)
T 2w7s_A 164 ELIGILYAGSGKDESEKNFGVYFTPQLKEFIQ 195 (200)
T ss_dssp CEEEEEEEEC----CCCEEEEECCHHHHHHHH
T ss_pred EEEEEEeccccCCCCccceeeecHHHHHHHHH
Confidence 999999887543 2344544 3355555554
No 45
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.57 E-value=1.8e-15 Score=148.97 Aligned_cols=120 Identities=17% Similarity=0.275 Sum_probs=103.4
Q ss_pred EecccHHHHHHHHHHHHcCCCCCcccccCcccCCCceeeeeeEEEEcCh---HhHHHcCCCHHHHHHHHhcCCCccceEE
Q 001280 826 VRGIPIYTISRVLDKIISGASGPSLLINGVKRPMPLVRILEVELYPTLL---SKARSFGLSDDWVQALVKKDPVRRQVLR 902 (1108)
Q Consensus 826 ~~aipi~~i~~vl~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~---~~a~~~Gl~~~wi~~~~~~~~~~~~~~~ 902 (1108)
.||||++.+++++++|+++++ +.|+ |||+.++.++. ..++.+|++.. ..++++
T Consensus 5 gFAIP~~~~~~v~~~L~~~G~--------v~r~-----~LGv~~~~~~~~~~~~~~~lgl~~~-----------~~~g~~ 60 (134)
T 2l97_A 5 GFAIPANDAINIIEQLEKNGK--------VTRP-----ALGIQMVNLSNVSTSDIRRLNIPSN-----------VTSGVI 60 (134)
T ss_dssp CCCCCCCCCCCCCCCCCCCCC--------SSCC-----CCCCEEEESSSSCHHHHHHHSSCSS-----------SCSCEE
T ss_pred EEEeEHHHHHHHHHHHHHcCC--------Eeee-----EeeEEEEECCchhHHHHHHcCCCcC-----------CCCCEE
Confidence 389999999999999998876 6777 99999999875 56677887632 236788
Q ss_pred EEeecCCCHHhHh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccC
Q 001280 903 VKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRD 974 (1108)
Q Consensus 903 V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~ 974 (1108)
|..|.++|||+ + |++||+|++|||++|.++.++..++...++| +++.++|.|+|+.+++++++...+
T Consensus 61 V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~~~~~~ 128 (134)
T 2l97_A 61 VRSVQSNMPAN-GHLEKYDVITKVDDKEIASSTDLQSALYNHSIG----DTIKITYYRNGKEETTSIKLNKLE 128 (134)
T ss_dssp EEECSTTSGGG-TTSCSSCEEEEETTEECCCHHHHHHHHHHSSTT----CEEEEEEEETTEEEEEEEECCCC-
T ss_pred EEEECCCCchH-HCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCC----CEEEEEEEECCEEEEEEEEEcccC
Confidence 99999999999 9 9999999999999999999999988766565 889999999999999999886543
No 46
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.56 E-value=2.5e-14 Score=150.46 Aligned_cols=142 Identities=19% Similarity=0.275 Sum_probs=111.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcC-CCCeEEEEEEECCEEE------EEEE-c
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDG-VDKNIELLIERGGISM------TVNL-V 363 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g~~~------~~~v-~ 363 (1108)
..+++| ..|.++|||++ | |++||+|++|||+++. +|.++..++... +|++++|+|.|+|+.. ..++ +
T Consensus 35 ~~~~~V-~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~~~~~~~~v~l 113 (196)
T 1p1d_A 35 SSPPLI-SYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKL 113 (196)
T ss_dssp SCSEEE-EECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSCSCCBCCSSCEEEEE
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCCCCCCCCCCcEEEEe
Confidence 356676 79999999999 9 9999999999999999 689999888654 4899999999998532 1222 2
Q ss_pred ccccccCCCcccccCCeEEccCCHHHhhccCcCCCeEEEE--CCCChhHHcC-CCCCCEEEEeCCeecCC--HHHHHHHH
Q 001280 364 QDLHSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAG-VPRHAIIKKFAGEEISR--LEDLISVL 438 (1108)
Q Consensus 364 ~~~~~~~~~~~~~~~G~~~~~l~~q~~~~~~~~~~gv~v~--~~~~~a~~aG-l~~Gd~I~~Vng~~v~~--l~~~~~~i 438 (1108)
.. ......|+.+...+... ...|++|. .++++|+++| |++||+|++|||+++.+ +++|.+++
T Consensus 114 ~~-------~~~~~lG~~~~~~~~~~------~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l 180 (196)
T 1p1d_A 114 PK-------KHSVELGITISSPSSRK------PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL 180 (196)
T ss_dssp CC-------CSSCCCCCEEECSCSSS------TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHH
T ss_pred cC-------CCCCCcCEEEECCCCCC------CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 11 12234577777654421 12578888 4899999999 99999999999999999 99999999
Q ss_pred HhcCCCCeEEEEEee
Q 001280 439 SKLSRGARVPIEYSS 453 (1108)
Q Consensus 439 ~~~~~~~~v~l~~~~ 453 (1108)
++. ++.+.|++.|
T Consensus 181 ~~~--~~~v~l~v~R 193 (196)
T 1p1d_A 181 QQC--EDLVKLKIRK 193 (196)
T ss_dssp HHC--TTCEEEEEEC
T ss_pred HhC--CCEEEEEEEe
Confidence 986 6666666654
No 47
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.56 E-value=3.2e-14 Score=150.72 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=104.2
Q ss_pred ceEEEEeecCCCHHhHh--ccCCCEEEEECCEEcCC----hhHHHHHHHhccCCCCCCCe-EEEEEEeCCEEE--EEEEe
Q 001280 899 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTC----FHDIENACQALDKDGEDNGK-LDITIFRQGREI--ELQVG 969 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a--L~~GDiIlsVnG~~V~~----~~dl~~~l~~~~~g~~~~~~-v~l~V~R~g~~~--~v~v~ 969 (1108)
.+++|..|.++|||+++ |+.||+|++|||+++.+ +.++..++ ...+ +. +.++|.|+++.. .+++.
T Consensus 45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~~----~~~v~l~v~R~~~~~~~~~~v~ 118 (206)
T 3r0h_A 45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLF--HTTY----EKAVTLTVFRADPPELEKFNVD 118 (206)
T ss_dssp SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHH--HSCC----SSEEEEEEECCSSCCEEEEEEE
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHH--HhcC----CCceEEEEEecccCCCcEEEEE
Confidence 46889999999999987 99999999999999999 44443333 3333 45 999999988654 44444
Q ss_pred ecccCCCCCcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHH
Q 001280 970 TDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFV 1046 (1108)
Q Consensus 970 ~~~~~~~~t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~ 1046 (1108)
+.... ...+|+.+.... .|++|.+|.++|||+++| |++||.|++|||+++.++ +++.
T Consensus 119 l~~~~-------~~~lG~~~~~~~-------------~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~ 178 (206)
T 3r0h_A 119 LMKKA-------GKELGLSLSPNE-------------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCY 178 (206)
T ss_dssp EECCT-------TCCCCEEEEECS-------------SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHH
T ss_pred EecCC-------CCccCeEEEcCC-------------ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 33211 112465554221 379999999999999999 999999999999999966 8888
Q ss_pred HHHHcCCCCceEEEEEEEe
Q 001280 1047 NVTKEIEHGEFVRVRTVHL 1065 (1108)
Q Consensus 1047 ~~v~~~~~~~~v~l~~v~r 1065 (1108)
.+++. .++.+.|. +.|
T Consensus 179 ~~l~~--~~~~v~L~-V~R 194 (206)
T 3r0h_A 179 ALFKG--ANGKVSME-VTR 194 (206)
T ss_dssp HHHHT--CCSEEEEE-EEE
T ss_pred HHHHc--CCCeEEEE-EEe
Confidence 88886 36678887 454
No 48
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Probab=99.55 E-value=1.4e-14 Score=150.99 Aligned_cols=156 Identities=16% Similarity=0.248 Sum_probs=115.2
Q ss_pred cEEEEEEEeCCCc--EEEEcccccCCCCeEEEEEecCCeEEeEEEEEEc-CCCceEEEEECCCCc--ccccc----cCCC
Q 001280 68 SYATGFVVDKRRG--IILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSAI--QFLNY----DEIP 138 (1108)
Q Consensus 68 ~~GSGfvV~~~~G--~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d-~~~DlAlLk~d~~~~--~~~~~----~~l~ 138 (1108)
.-.+||++...+| |||||+||+..+.. +.+.| +.++++..| |..|+||||++.... +.+.. ..++
T Consensus 14 ~CTsGf~v~~~~G~~~ilTa~Hc~~~g~~---v~~~d---~~g~v~~~~~p~~DiAlikl~~~~~~~~~v~~~g~~~~~~ 87 (188)
T 2oua_A 14 RCSVGFAATNASGQPGFVTAGHCGSVGTQ---VSIGN---GRGVFERSVFPGNDAAFVRGTSNFTLTNLVSRYNSGGYAT 87 (188)
T ss_dssp EEECCEEEECTTCCEEEEECGGGCCTTCE---EEETT---EEEEEEEEECSBSCEEEEEEEESCEEEEEEECGGGCSEEE
T ss_pred cEecCEEEEeCCCCEEEEECcccCCCCCE---EEecC---ceEEEEeeCCCCCCEEEEEeCCCCccccceeecCCcceEe
Confidence 4568999964478 99999999975433 33455 889999999 999999999986532 21111 1123
Q ss_pred CC-CcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEe
Q 001280 139 LA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALN 217 (1108)
Q Consensus 139 l~-~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~ 217 (1108)
+. +..+++|+.|..+|++.+ .+.|+|+.+++... |....+ ..+++++..+.+|+|||||+. +|++|||+
T Consensus 88 l~~~~~~~vG~~v~~~G~~tG----~t~G~v~~~~~~v~-~~~~~~----~~~~~~~~~~~~GDSGgpl~~-~~~~vGi~ 157 (188)
T 2oua_A 88 VSGSSTAPIGSQVCRSGSTTG----WYCGTIQARNQTVS-YPQGTV----HSLTRTSVCAEPGDSGGSFIS-GTQAQGVT 157 (188)
T ss_dssp CCBCCCCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-ETTEEE----EEEEEESCCCCTTCTTCEEEE-TTEEEEEE
T ss_pred ccCccCCCCCCeEEEEEcCCC----eEEEEEEEEeeEEE-eCCCcE----eeeEeeeeecCCCCccceEEE-CCEEEEEE
Confidence 33 467899999999999987 47899999887542 221111 236889999999999999994 88999999
Q ss_pred ecccC---CCCcccccChHHHHHHH
Q 001280 218 AGSKS---SSASAFFLPLERVVRAL 239 (1108)
Q Consensus 218 ~~~~~---~~~~~falPi~~i~~~l 239 (1108)
+++.. ..+.+|++|++.+++.+
T Consensus 158 s~~~~~~~~~~~~~~~pi~~~l~~~ 182 (188)
T 2oua_A 158 SGGSGNCRTGGTTFYQEVNPMLNSW 182 (188)
T ss_dssp EEEEEETTTEEEEEEEESHHHHHHT
T ss_pred eccCCCCCCCCceEEEEHHHHHHHc
Confidence 87642 23568999999888664
No 49
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Probab=99.52 E-value=9.6e-14 Score=146.62 Aligned_cols=156 Identities=25% Similarity=0.240 Sum_probs=108.4
Q ss_pred cEEEEEEEeCCCcEEEEcccccCCCC--eEEEEEe----cCCeEEe-EEEEEEcCCCceEEEEECCCC-------ccc-c
Q 001280 68 SYATGFVVDKRRGIILTNRHVVKPGP--VVAEAMF----VNREEIP-VYPIYRDPVHDFGFFRYDPSA-------IQF-L 132 (1108)
Q Consensus 68 ~~GSGfvV~~~~G~ILTn~HVV~~~~--~~~~v~~----~d~~~~~-a~vv~~d~~~DlAlLk~d~~~-------~~~-~ 132 (1108)
+.||||+|++ .+||||+||+.... ..+.+.. .++..+. ++++..++.+||||||++... +.+ .
T Consensus 22 ~~c~G~lI~~--~~VLTaaHcv~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~~~~~ 99 (204)
T 2vid_A 22 KSATGFVVGK--NTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFNFND 99 (204)
T ss_dssp SSCEEEEEET--TEEEECHHHHTTCCTTCEEEESCCSSSCCSCEEEEEEEEECSSSSCCEEEEECSEEEEEETTEEEHHH
T ss_pred eeEEEEEEEC--CEEEEChhHCCCccCCceEEEEeccccCCCcEEEeeEEecCCCCCeEEEEEEcCcccccccccccccc
Confidence 4689999996 49999999998533 1444422 3556676 567777889999999998531 111 0
Q ss_pred cccCCCCCCcccCCCCEEEEEecCCCCCC----eEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceec
Q 001280 133 NYDEIPLAPEAACVGLEIRVVGNDSGEKV----SILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVID 208 (1108)
Q Consensus 133 ~~~~l~l~~~~~~~G~~V~~iG~p~g~~~----si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n 208 (1108)
.+.++.|.. .+..|+.++++|+|.+... ....|.++.... .++..++.+.+|+|||||++
T Consensus 100 ~v~pi~l~~-~~~~g~~~~~~G~g~~~~~~~~~~~~~g~v~~~~~---------------~~~~~~~~~~~GdSGGPl~~ 163 (204)
T 2vid_A 100 NVTPFKYAA-GAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVEG---------------SSIVYSAHTESGNSGSPVLN 163 (204)
T ss_dssp HCCCCCBCS-CCCTTCEEEEEECCCCCC--CCCEEEEEEEEEEET---------------TEEEECCCCCGGGTTCEEEC
T ss_pred cccccccCC-cCCCCCEEEEEeCCCCCCCCcceEeeccEEeeccC---------------CeEEEecccCCCCccCcEEC
Confidence 134555543 6789999999999986553 355677766422 14778889999999999999
Q ss_pred ccCcEEEEeecccC---CCCccccc-ChHHHHHHHHH
Q 001280 209 WQGRAVALNAGSKS---SSASAFFL-PLERVVRALRF 241 (1108)
Q Consensus 209 ~~G~vVGi~~~~~~---~~~~~fal-Pi~~i~~~l~~ 241 (1108)
.+|++|||++.+.. ....+|.+ +...+++++++
T Consensus 164 ~~g~lvGI~s~g~~~~~~~~~~~~~~~~~~~~~wI~~ 200 (204)
T 2vid_A 164 SNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAE 200 (204)
T ss_dssp TTSCEEEEEEEECC---CCCCEEEECCCHHHHHHHHH
T ss_pred CCCeEEEEEecCccCCCcccccceeEeCHHHHHHHHh
Confidence 99999999988753 23345543 33556666654
No 50
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.51 E-value=1.9e-13 Score=139.78 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=106.1
Q ss_pred cCCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhH-H
Q 001280 258 IPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLK-L 335 (1108)
Q Consensus 258 v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~-l 335 (1108)
..|++||+.+... ..|++| ..|.++|||++ ||++||+|++|||+++.+|.+ +
T Consensus 13 ~~~~~lG~~~~~~-------------------------~~g~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~ 66 (166)
T 1w9e_A 13 DQDGKIGLRLKSI-------------------------DNGIFV-QLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 66 (166)
T ss_dssp CTTSCCSEEEEEE-------------------------TTEEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCcEeEEEEeC-------------------------CCCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 3578999998852 267776 79999999999 999999999999999999988 6
Q ss_pred HHH-HhcCCCCeEEEEEEECCEEEEEEE-cccccccCCCcccccCCeEEccCCHHHhhccCcCCCeEEEE--CCCChhHH
Q 001280 336 ETL-LDDGVDKNIELLIERGGISMTVNL-VQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFR 411 (1108)
Q Consensus 336 ~~~-l~~~~g~~v~l~V~R~g~~~~~~v-~~~~~~~~~~~~~~~~G~~~~~l~~q~~~~~~~~~~gv~v~--~~~~~a~~ 411 (1108)
... +....|++++|+|.|+++.+++++ ... ....|+.+. .| +|. .++++|++
T Consensus 67 ~~~~~~~~~~~~v~l~vr~~~~~~~v~l~~~~---------~~~lG~~~~--------------~g-~v~~v~~~s~a~~ 122 (166)
T 1w9e_A 67 AHKVLKQAFGEKITMTIRDRPFERTITMHKDS---------TGHVGFIFK--------------NG-KITSIVKDSSAAR 122 (166)
T ss_dssp HHHHHHHCCSSEEEEEEECCTTCEEEEEECCT---------TSCCSEEEE--------------TT-EEEEECTTSHHHH
T ss_pred HHHHHhcCCCCEEEEEEEcCCCcEEEEEecCC---------CCcEeEEEe--------------CC-EEEEEccCCHHHH
Confidence 544 456778899999944447777766 311 123355443 13 444 58999999
Q ss_pred cCCCCCCEEEEeCCeecCCHHHHHHHHHhcCCCCeEEEEE
Q 001280 412 AGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEY 451 (1108)
Q Consensus 412 aGl~~Gd~I~~Vng~~v~~l~~~~~~i~~~~~~~~v~l~~ 451 (1108)
+||++||+|++|||+++.++....-.+.-..+++.+.+.+
T Consensus 123 aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v 162 (166)
T 1w9e_A 123 NGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162 (166)
T ss_dssp TTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEE
T ss_pred cCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEE
Confidence 9999999999999999999864433333333455555443
No 51
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.51 E-value=1.7e-13 Score=144.48 Aligned_cols=143 Identities=22% Similarity=0.228 Sum_probs=107.7
Q ss_pred CCceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE----------EEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS----------MTVN 361 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~----------~~~~ 361 (1108)
..|++| ..|.++|||++ ||++||+|++|||+.+.++ .++..++ ...|+++.|+|.|+++. .++.
T Consensus 32 ~~~~~V-~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~-~~~g~~v~l~v~R~~~~~~~~g~~~~~~~~~ 109 (200)
T 2qt5_A 32 DGKPRV-SNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLL-KNVGERVVLEVEYELPPVSIQGSSVMFRTVE 109 (200)
T ss_dssp SSCSEE-EEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHH-HTCCSEEEEEEEEECCCCCCCCSSEEEEEEE
T ss_pred CCCeEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH-HhCCCeEEEEEeccCCCcccCCCccceeEEE
Confidence 466777 79999999996 8999999999999999999 6666555 34588999999997642 4555
Q ss_pred E-cccccccCCCcccccCCeEEccCCHHHhhccCcCCCeEEEE--CCCChhHHcC-CCCCCEEEEeCCeecC--CHHHHH
Q 001280 362 L-VQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAG-VPRHAIIKKFAGEEIS--RLEDLI 435 (1108)
Q Consensus 362 v-~~~~~~~~~~~~~~~~G~~~~~l~~q~~~~~~~~~~gv~v~--~~~~~a~~aG-l~~Gd~I~~Vng~~v~--~l~~~~ 435 (1108)
+ +... ....|+.+...... +.....+++|. .++++|+++| |++||+|++|||+++. +++++.
T Consensus 110 v~l~~~--------~~~lG~~l~~g~~~----~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~ 177 (200)
T 2qt5_A 110 VTLHKE--------GNTFGFVIRGGAHD----DRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM 177 (200)
T ss_dssp EEEECB--------TTBCSEEEEEECCS----STTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred EEEecC--------CCCeEEEEECCCCC----CccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 5 4321 12346655432210 00112578888 5899999999 9999999999999999 999999
Q ss_pred HHHHhcCCCCeEEEEEeee
Q 001280 436 SVLSKLSRGARVPIEYSSY 454 (1108)
Q Consensus 436 ~~i~~~~~~~~v~l~~~~~ 454 (1108)
++|+. .++.+.|++.|-
T Consensus 178 ~~l~~--~~~~v~l~v~R~ 194 (200)
T 2qt5_A 178 SILKQ--CGQEATLLIEYD 194 (200)
T ss_dssp HHHHT--TCSEEEEEEEEE
T ss_pred HHHHc--CCCeEEEEEEEC
Confidence 99998 456777777653
No 52
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=99.50 E-value=2.9e-13 Score=149.87 Aligned_cols=170 Identities=24% Similarity=0.283 Sum_probs=115.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCe---EEEEEe--------cCCeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPV---VAEAMF--------VNREEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~---~~~v~~--------~d~~~~~a~vv~~d 114 (1108)
.+++|+|.... ......|+||+|++ .||||++||+..... .+.+.+ .++....++++..+
T Consensus 19 ~~~~v~i~~~~-------~~~~~~C~G~lI~~--~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~ 89 (274)
T 2o8l_A 19 YAPVTYIQVEA-------PTGTFIASGVVVGK--DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYS 89 (274)
T ss_dssp GTTEEEEEEEE-------TTEEEEEEEEEEET--TEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECS
T ss_pred cceEEEEEEEc-------CCCCEEEEEEEEEC--CEEEEChhhCcccCCCcceEEEEecccCcccccCccEEEEEEEeCC
Confidence 45677777642 11346899999995 499999999974332 255543 34555556677777
Q ss_pred CCCceEEEEECCCC----cccccccCCCCC-CcccCCCCEEEEEecCCCCCC---eEEEEEEEEecCCCCCCCCCCcccc
Q 001280 115 PVHDFGFFRYDPSA----IQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKV---SILAGTLARLDRDAPHYKKDGYNDF 186 (1108)
Q Consensus 115 ~~~DlAlLk~d~~~----~~~~~~~~l~l~-~~~~~~G~~V~~iG~p~g~~~---si~~G~is~~~~~~~~~~~~~~~~~ 186 (1108)
..+||||||++... +. ..+.++.|. ...+..|+.++++|+|.+... ....|.++....
T Consensus 90 ~~~DIALLkL~~~~~~~~~~-~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~~~~~------------- 155 (274)
T 2o8l_A 90 GEGDLAIVKFSPNEQNKHIG-EVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKITYLKG------------- 155 (274)
T ss_dssp SSSCCEEEEECCCTTSCCTT-TSSCCCEECCCTTCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEET-------------
T ss_pred CCCcEEEEEecCcccccccc-cccccccccccccccCCCEEEEEECCCCCCCceEEecCceEEecCC-------------
Confidence 88999999998542 11 123444444 345789999999999977542 235566665421
Q ss_pred cceEEEEeeecCCCCCCCceecccCcEEEEeecccCC-CCcccccChHHHHHHHHH
Q 001280 187 NTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 187 ~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falPi~~i~~~l~~ 241 (1108)
.+++.++.+.+|+||||||+.+|+||||++.+... .+.++++. ..++.++++
T Consensus 156 --~~i~~~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~~~~~~~~~~-~~~~~wI~~ 208 (274)
T 2o8l_A 156 --EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFIN-ENVRNFLKQ 208 (274)
T ss_dssp --TEEEESCCCCTTCTTCEEECTTSCEEEEEEEEETTTEEEEEECC-HHHHHHHHH
T ss_pred --CeEEeCcccCCCCchhheeccCCeEEEEEeCcccCCCCceEEec-HHHHHHHHH
Confidence 14788889999999999999999999999876532 23455553 445555543
No 53
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.49 E-value=3.1e-13 Score=143.10 Aligned_cols=137 Identities=21% Similarity=0.258 Sum_probs=100.9
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC----hhHHHHHHhcCCCCe-EEEEEEECCEEE--EEEE-cccc
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ----FLKLETLLDDGVDKN-IELLIERGGISM--TVNL-VQDL 366 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~----~~~l~~~l~~~~g~~-v~l~V~R~g~~~--~~~v-~~~~ 366 (1108)
.|++| ..|.++|||++ | |+.||+|++|||+.+.+ +.++..++.. .++. +.|+|.|+++.. ++++ +...
T Consensus 45 ~g~~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~-~~~~~v~l~v~R~~~~~~~~~~v~l~~~ 122 (206)
T 3r0h_A 45 TGCVI-THVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHT-TYEKAVTLTVFRADPPELEKFNVDLMKK 122 (206)
T ss_dssp SCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHS-CCSSEEEEEEECCSSCCEEEEEEEEECC
T ss_pred CCeEE-EEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHh-cCCCceEEEEEecccCCCcEEEEEEecC
Confidence 57777 79999999999 8 99999999999999999 4444444444 4555 999999987654 3444 3221
Q ss_pred cccCCCcccccCCeEEccCCHHHhhccCcCCCeEEEE--CCCChhHHcC-CCCCCEEEEeCCeecCCH--HHHHHHHHhc
Q 001280 367 HSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAG-VPRHAIIKKFAGEEISRL--EDLISVLSKL 441 (1108)
Q Consensus 367 ~~~~~~~~~~~~G~~~~~l~~q~~~~~~~~~~gv~v~--~~~~~a~~aG-l~~Gd~I~~Vng~~v~~l--~~~~~~i~~~ 441 (1108)
. ....|+.+... ..|+||. .++|+|+++| |++||+|++|||+++.++ +++.+.+++.
T Consensus 123 ~-------~~~lG~~~~~~-----------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~ 184 (206)
T 3r0h_A 123 A-------GKELGLSLSPN-----------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA 184 (206)
T ss_dssp T-------TCCCCEEEEEC-----------SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred C-------CCccCeEEEcC-----------CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 1 12346555421 1478888 4999999999 999999999999999966 7888888773
Q ss_pred CCCCeEEEEEeeec
Q 001280 442 SRGARVPIEYSSYT 455 (1108)
Q Consensus 442 ~~~~~v~l~~~~~~ 455 (1108)
++.+.|++.|..
T Consensus 185 --~~~v~L~V~R~~ 196 (206)
T 3r0h_A 185 --NGKVSMEVTRPK 196 (206)
T ss_dssp --CSEEEEEEEEEC
T ss_pred --CCeEEEEEEeCC
Confidence 345666665543
No 54
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Probab=99.48 E-value=4.2e-14 Score=154.21 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=100.7
Q ss_pred ccEEEEEEEeCCCcEEEEcccccCCCC---eEEEEEecC------------CeEEeEEEEEEcC---CCceEEEEECCCC
Q 001280 67 ASYATGFVVDKRRGIILTNRHVVKPGP---VVAEAMFVN------------REEIPVYPIYRDP---VHDFGFFRYDPSA 128 (1108)
Q Consensus 67 ~~~GSGfvV~~~~G~ILTn~HVV~~~~---~~~~v~~~d------------~~~~~a~vv~~d~---~~DlAlLk~d~~~ 128 (1108)
...|+||+|++ ++||||+||+.+.. ..+.+.... ...+.++.+..|| .+|||||+++...
T Consensus 47 ~~~c~G~lI~~--~~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp~~~~~DiALLkl~~~~ 124 (246)
T 1qtf_A 47 STLATGVLIGK--NTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNE 124 (246)
T ss_dssp TEEEEEEEEET--TEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTCTTSCCEEEEECCCT
T ss_pred CceEEEEEEEC--CEEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCCCCCCCCEEEEEEeCCc
Confidence 46899999995 59999999997432 234444321 1478899999999 9999999998653
Q ss_pred c--cc-ccccCCCCC-CcccCCCCEEEEEecCCCCCCe-EEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCC
Q 001280 129 I--QF-LNYDEIPLA-PEAACVGLEIRVVGNDSGEKVS-ILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSG 203 (1108)
Q Consensus 129 ~--~~-~~~~~l~l~-~~~~~~G~~V~~iG~p~g~~~s-i~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SG 203 (1108)
. .+ -.+.+++|. ...+..|+.++++|+|.+...+ .....+.... .+++++.+.+|+||
T Consensus 125 ~~~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g~~~~~~~~~~~~~~~-----------------~~~~~~~~~~GdSG 187 (246)
T 1qtf_A 125 KGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQSQIEMFN-----------------DSQYFGYTEVGNSG 187 (246)
T ss_dssp TSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTSTTCCEEEEEEESS-----------------SSBEESCCCGGGTT
T ss_pred cccccccceeeeecCCccccCCCCEEEEEECCCCCCCceeEeeeeeecC-----------------cEEEeCCCCCCCch
Confidence 1 00 023445554 3457899999999999886543 1121111110 02445678999999
Q ss_pred CceecccCcEEEEeecccCCCCcccccChHHH
Q 001280 204 SPVIDWQGRAVALNAGSKSSSASAFFLPLERV 235 (1108)
Q Consensus 204 gPv~n~~G~vVGi~~~~~~~~~~~falPi~~i 235 (1108)
|||+|.+|+||||++.+.. +|++|++.+
T Consensus 188 GPlv~~~g~lvGI~s~g~~----~~~ipi~~~ 215 (246)
T 1qtf_A 188 SGIFNLKGELIGIHSGKGG----QHNLPIGVF 215 (246)
T ss_dssp CEEECTTCCEEEEEEEEET----TTTEEEEEE
T ss_pred hheECCCCEEEEEEecccc----Cccccchhh
Confidence 9999999999999988642 577776544
No 55
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1
Probab=99.48 E-value=5.5e-13 Score=147.18 Aligned_cols=171 Identities=24% Similarity=0.285 Sum_probs=115.6
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCC---eEEEEEe--------cCCeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP---VVAEAMF--------VNREEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~---~~~~v~~--------~d~~~~~a~vv~~d 114 (1108)
.+++|+|.... ......|+||+|++ .|||||+||+.... ..+.+++ .+++...++++..+
T Consensus 19 ~~~~v~l~~~~-------~~g~~~CgG~lI~~--~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~ 89 (268)
T 1wcz_A 19 YAPVTYIQVEA-------PTGTFIASGVVVGK--DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYS 89 (268)
T ss_dssp GTTEEEEEEEC--------CCEEEEEEEECSS--SEEEECHHHHGGGTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECS
T ss_pred ccEEEEEEEEc-------CCCCEEEEEEEEEC--CEEEEChhhCCCccCCcceEEEEecccCcccccCCcEEEEEEecCC
Confidence 45667776532 12346899999995 59999999997432 2366643 34555556677778
Q ss_pred CCCceEEEEECCCCc--cc-ccccCCCCCC-cccCCCCEEEEEecCCCCCC---eEEEEEEEEecCCCCCCCCCCccccc
Q 001280 115 PVHDFGFFRYDPSAI--QF-LNYDEIPLAP-EAACVGLEIRVVGNDSGEKV---SILAGTLARLDRDAPHYKKDGYNDFN 187 (1108)
Q Consensus 115 ~~~DlAlLk~d~~~~--~~-~~~~~l~l~~-~~~~~G~~V~~iG~p~g~~~---si~~G~is~~~~~~~~~~~~~~~~~~ 187 (1108)
..+||||||++.... .+ ..+.++.|.. ..+..|+.++++|+|.+... ....|.++....
T Consensus 90 ~~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~~~~~-------------- 155 (268)
T 1wcz_A 90 GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKG-------------- 155 (268)
T ss_dssp SSSCCEEEEECCCTTSCCHHHHSCCCCBCCCSSCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEET--------------
T ss_pred CCCcEEEEEecCcccccccccccceeecccccccCCCCEEEEEECCCCCCCceEEeecceEEeeCC--------------
Confidence 889999999986421 00 1234445543 45788999999999976542 235566665421
Q ss_pred ceEEEEeeecCCCCCCCceecccCcEEEEeecccCC-CCcccccChHHHHHHHHH
Q 001280 188 TFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 188 ~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falPi~~i~~~l~~ 241 (1108)
.+++.++.+.+|+|||||++.+|+||||++.+... .+.+|++. ..++.+++.
T Consensus 156 -~~i~~~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~~~~~~~~~~-~~~~~wI~~ 208 (268)
T 1wcz_A 156 -EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFIN-ENVRNFLKQ 208 (268)
T ss_dssp -TEEEESBCCCTTCTTCEEECTTSCEEEEEEEEETTTEEEEEECC-HHHHHHHHH
T ss_pred -CeEEEecccCCCCccCeEEccCCEEEEEEeCCccCCcceeEEcC-HHHHHHHHH
Confidence 14788899999999999999899999999876532 23455564 555555544
No 56
>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1
Probab=99.46 E-value=1.9e-13 Score=142.45 Aligned_cols=157 Identities=18% Similarity=0.275 Sum_probs=112.3
Q ss_pred EEEEEEeCC-CcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEc-CCCceEEEEECCCC-c-cccccc---CCCCC-C
Q 001280 70 ATGFVVDKR-RGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSA-I-QFLNYD---EIPLA-P 141 (1108)
Q Consensus 70 GSGfvV~~~-~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d-~~~DlAlLk~d~~~-~-~~~~~~---~l~l~-~ 141 (1108)
.+||++..+ ++|||||+||+... .. +...++....+++...+ |..|+||||++... . +.+.+. .+++. .
T Consensus 15 T~Gfiv~~~g~~~ilT~~Hv~~~~-~~--v~~~~~~~~~g~~~~~~~~~~DiAlikl~~~~~~~~~v~~~~g~~~~i~~~ 91 (187)
T 1hpg_A 15 SAAFNVTKGGARYFVTAGHCTNIS-AN--WSASSGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDLYNGSTQDISSA 91 (187)
T ss_dssp ECCEEEEETTEEEEEECHHHHTTC-SE--EESSTTCCEEEEEEEEECSBSCEEEEEECSSCCCCSEEECSSSCEEECCEE
T ss_pred cceEEEEECCeeEEEECcccCCCC-Ce--EEeCCCceeEEEEeCccCCCCCEEEEEeCCCCCcCceEEecCCceeeeccc
Confidence 459999852 25999999999854 33 33456554446666666 88999999998632 1 222220 12222 5
Q ss_pred cccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeeccc
Q 001280 142 EAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1108)
Q Consensus 142 ~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1108)
..+++|+.|..+|++.+ .+.|+|+.+++... |.... ...+|++++.+.+|+|||||++.+ ++|||++++.
T Consensus 92 ~~~~~G~~v~~~G~~~g----~t~G~v~~~~~~v~-~~~~~----~~~~i~t~~~~~~GdSGgpl~~~~-~~vGi~s~~~ 161 (187)
T 1hpg_A 92 ANAVVGQAIKKSGSTTK----VTSGTVTAVNVTVN-YGDGP----VYNMVRTTACSAGGDSGGAHFAGS-VALGIHSGSS 161 (187)
T ss_dssp CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-ETTEE----EEEEEEECCCCCTTCTTCEEEETT-EEEEEEEEES
T ss_pred cCCCCCCEEEEEEcCCC----EeEEEEEEeEEEEE-eCCCe----EeeeEEeccccCCCCCCCeEEECC-EEEEEEEeeC
Confidence 67899999999999976 58899999887642 22111 234699999999999999999874 9999998765
Q ss_pred CC---CCcccccChHHHHHHH
Q 001280 222 SS---SASAFFLPLERVVRAL 239 (1108)
Q Consensus 222 ~~---~~~~falPi~~i~~~l 239 (1108)
.. .+.+|++|++.+++.|
T Consensus 162 ~~~~~~~~~~~~~i~~~~~~l 182 (187)
T 1hpg_A 162 GCSGTAGSAIHQPVTEALSAY 182 (187)
T ss_dssp CCBTTBCCCEEEEHHHHHHHH
T ss_pred CCCCCCCceEEEEHHHHHHHc
Confidence 31 3689999999888765
No 57
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}
Probab=99.44 E-value=2.1e-13 Score=141.95 Aligned_cols=149 Identities=21% Similarity=0.351 Sum_probs=109.3
Q ss_pred EEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEc-CCCceEEEEECCCCc--ccccc---cCCCCC-Cc
Q 001280 70 ATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSAI--QFLNY---DEIPLA-PE 142 (1108)
Q Consensus 70 GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d-~~~DlAlLk~d~~~~--~~~~~---~~l~l~-~~ 142 (1108)
.+||+++. +||||+||+..+. . ++..| +++++.| +..|+||||++.... +.+.+ .++++. ..
T Consensus 18 T~Gf~~~~---~ilTa~Hc~~~~~-~--v~~~d-----g~v~~~~~~~~DiAlikl~~~~~~~~~v~~~~g~~v~l~~s~ 86 (189)
T 2ea3_A 18 SIGFAVNG---GFITAGHCGRTGA-T--TANPT-----GTFAGSSFPGNDYAFVRTGAGVNLLAQVNNYSGGRVQVAGHT 86 (189)
T ss_dssp ECCEEETT---EEEECGGGCCTTC-E--EETTT-----EEEEEEECSBSCEEEEEECTTCEEEEEEECSSSCEEECCBCC
T ss_pred ccCEEccC---eEEEchhcCCCCC-E--EEeCC-----cEEEeeCCCCCCEEEEEECCCCccccceEecCCceeecCCCc
Confidence 47999973 9999999998543 3 34444 7888998 999999999986532 21110 022343 46
Q ss_pred ccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccC
Q 001280 143 AACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS 222 (1108)
Q Consensus 143 ~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~ 222 (1108)
.+++|+.|..+|++.+ .+.|+|+.+++... |....+ ..+++++..+.+|+|||||++ +|+++||++++..
T Consensus 87 ~~~vG~~v~~~G~~tG----~t~G~Vs~~~~~v~-~~~~~~----~~~~~~~~~~~~GDSGgpl~~-~~~~vGi~s~~~~ 156 (189)
T 2ea3_A 87 AAPVGSAVCRSGSTTG----WHCGTITALNSSVT-YPEGTV----RGLIRTTVCAEPGDSGGSLLA-GNQAQGVTSGGSG 156 (189)
T ss_dssp CCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-ETTEEE----EEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEeCCc----cEEEEEEecceEEE-eCCccC----cceEEeeeeccCCCccCeEEE-CCEEEEEEeecCC
Confidence 7899999999999977 47889988877542 221111 236889999999999999996 7999999987642
Q ss_pred ---CCCcccccChHHHHHHH
Q 001280 223 ---SSASAFFLPLERVVRAL 239 (1108)
Q Consensus 223 ---~~~~~falPi~~i~~~l 239 (1108)
..+.+|++|++.+++.+
T Consensus 157 ~c~~~~~~~~~pi~~~l~~~ 176 (189)
T 2ea3_A 157 NCRTGGTTFFQPVNPILQAY 176 (189)
T ss_dssp ETTTEEEEEEEEHHHHHHHH
T ss_pred CCCCCCcEEEEEHHHHHHHC
Confidence 23579999998887665
No 58
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3
Probab=99.43 E-value=9.9e-14 Score=138.29 Aligned_cols=128 Identities=17% Similarity=0.180 Sum_probs=92.7
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEcCCCceEEEEEC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYD 125 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d 125 (1108)
...+|+|... ..+.||||+|+. +|++|||+||+. +.....++. ++++++ +.+++..|||++++.
T Consensus 3 ~~n~~~v~g~----------~~G~GsgF~i~~-~g~vVTA~HVv~-~~~~~~V~~-~G~~~~---Vgf~~~~DlA~l~v~ 66 (198)
T 1mbm_A 3 RGNVGFVAGS----------SYGTGSVWTRNN-EVVVLTASHVVG-RANMATLKI-GDAMLT---LTFKKNGDFAEAVTT 66 (198)
T ss_dssp CTTEEEEESS----------SEEEEEEEEETT-EEEEEEEHHHHC-TTCEEEEEE-TTEEEE---EECEEETTEEEEEEC
T ss_pred ccceEEEecc----------cCCccceEEECC-CeEEEEeeeEEc-cCceEEEEE-CCEEEE---eecccCCcEEEEEee
Confidence 4557777653 467899999997 899999999997 455677888 999988 778899999999993
Q ss_pred CCCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCc
Q 001280 126 PSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSP 205 (1108)
Q Consensus 126 ~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgP 205 (1108)
.+..+ -.+..++|++ +++|+.-+. ...|.+.++.-. ...++++ .||+||||
T Consensus 67 ~~~~~-g~~P~l~las--p~vG~a~~~----------~~tG~~~~l~g~-------------~g~l~~t---~PGDSGsP 117 (198)
T 1mbm_A 67 QSELP-GNWPQLHFAQ--PTTGPASWC----------TATGDEEGLLSG-------------EVCLAWT---TSGDSGSA 117 (198)
T ss_dssp TTTSC-SCCCBCCBCC--CCSEEEEEE----------ETTEEEEEEECS-------------SCEECCC---CGGGTTCE
T ss_pred ccCCC-CCCcccccCC--CcccceEEe----------eccccEEEEecC-------------CceeEcC---CCCCCCCc
Confidence 21111 1222344433 688883332 456677776511 1246666 89999999
Q ss_pred eecccCcEEEEeec
Q 001280 206 VIDWQGRAVALNAG 219 (1108)
Q Consensus 206 v~n~~G~vVGi~~~ 219 (1108)
|+|.+ +||||+++
T Consensus 118 Vl~~~-~vIGV~T~ 130 (198)
T 1mbm_A 118 VVQGD-AVVGVHTG 130 (198)
T ss_dssp EEETT-EEEEEEEE
T ss_pred cccCC-eEEEEEec
Confidence 99999 99999998
No 59
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}
Probab=99.41 E-value=2.7e-13 Score=140.66 Aligned_cols=151 Identities=20% Similarity=0.337 Sum_probs=110.3
Q ss_pred EEEEEeC-CCcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEc-CCCceEEEEECCCC--cccccc---cCCCCC-Cc
Q 001280 71 TGFVVDK-RRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSA--IQFLNY---DEIPLA-PE 142 (1108)
Q Consensus 71 SGfvV~~-~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d-~~~DlAlLk~d~~~--~~~~~~---~~l~l~-~~ 142 (1108)
+||++.. .++|||||+||+..+ ..+.+ +.+++++.| |..|+||||+++.. .+.+.+ .++++. ..
T Consensus 18 ~Gf~v~~~~~~~ilTa~Hc~~~g-~~v~~-------~~g~v~~~~~~~~D~Alikl~~~~~~~~~v~~~~g~~~~i~~~~ 89 (186)
T 2pfe_A 18 IGFSVRQGSQTGFATAGHCGSTG-TRVSS-------PSGTVAGSYFPGRDMGWVRITSADTVTPLVNRYNGGTVTVTGSQ 89 (186)
T ss_dssp CCEEEEETTEEEEEECGGGCCTT-CEEBT-------TTEEEEEEECSBSCEEEEEECTTSEEEEEEECSSSCEEECCBCC
T ss_pred eeEEEEcCCeeEEEEChhhCCCC-CEEEE-------eeEEEEecCCCCCCEEEEEeCCCcccccceeccCCceEecCCCC
Confidence 7999963 247999999999854 33332 668888998 99999999998653 222221 022232 56
Q ss_pred ccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccC
Q 001280 143 AACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS 222 (1108)
Q Consensus 143 ~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~ 222 (1108)
.+++|++|..+|++.| .+.|+|+.+++... |....+ ..+++++..+.+|+|||||+. +|+++||++++..
T Consensus 90 ~~~vG~~vc~~G~~tG----~t~G~vs~~~~tv~-~~~~~~----~~~~~~~~c~~~GDSGgpl~~-~~~~vGi~s~g~~ 159 (186)
T 2pfe_A 90 EAATGSSVCRSGATTG----WRCGTIQSKNQTVR-YAEGTV----TGLTRTTACAEGGDSGGPWLT-GSQAQGVTSGGTG 159 (186)
T ss_dssp CCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-ETTEEE----EEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEE
T ss_pred CCCCCCeEEEEEeCCc----eEEEEEEEEeeeEE-eCCceE----eceEeccEEecCCCccCeEEE-CCEEEEEEeecCC
Confidence 7899999999999987 57899998887632 211112 235788888899999999995 8899999987642
Q ss_pred ---CCCcccccChHHHHHHH
Q 001280 223 ---SSASAFFLPLERVVRAL 239 (1108)
Q Consensus 223 ---~~~~~falPi~~i~~~l 239 (1108)
..+.+|++|++.+++.+
T Consensus 160 ~c~~~~~~~~~pi~~~l~~~ 179 (186)
T 2pfe_A 160 DCRSGGITFFQPINPLLSYF 179 (186)
T ss_dssp ETTTEEEEEEEEHHHHHHHH
T ss_pred CCCCCCcEEEEEHHHHHHHC
Confidence 23578999998887765
No 60
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=99.38 E-value=1.7e-12 Score=137.91 Aligned_cols=169 Identities=10% Similarity=0.036 Sum_probs=112.5
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCC--ceEEEEe----ecCCeEEeE-EEEEeeCCCcEEEEEECCCCCC-----cc
Q 001280 649 FFGTGVIIYHSQSMGLVVVDKNTVAISA--SDVMLSF----AAFPIEIPG-EVVFLHPVHNFALIAYDPSSLG-----VA 716 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G~IlTnr~~V~~~~--~~i~V~~----~~~~~~~~a-~vv~~dp~~dlAilk~d~~~l~-----~~ 716 (1108)
..|+||+|+ +++|||++|++.... ..+.|++ .+ +..+++ +++..|+..||||||++...++ ..
T Consensus 23 ~~c~G~lI~----~~~VLTaaHcv~~~~~~~~i~v~~~~~~~~-g~~~~~~~v~~~~~~~DiAll~l~~~~~~~~~~~~~ 97 (210)
T 2as9_A 23 KDATGFVIG----KNTIITNKHVSKDYKVGDRITAHPNGDKGN-GGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFN 97 (210)
T ss_dssp SSCEEEEEE----TTEEEECHHHHHHCCTTCEEEESCCGGGCC-SCEEEEEEEEECSSSSSCEEEEECSEEEEEETTEEE
T ss_pred eeEEEEEEe----CCEEEECHhHCCccCCCCEEEEEeCcccCC-CCEEEEEEEEeCCCCCcEEEEEecCccccccccccc
Confidence 479999999 579999988765332 3577764 34 677888 4888999999999999763221 00
Q ss_pred cccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccceEEEEecccC-CCCCceE
Q 001280 717 GASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFG-STFSGVL 795 (1108)
Q Consensus 717 ~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~ig-~~sGGpL 795 (1108)
-...+.++.|.. .+..|+.++++|+|.+....... .++ .+.++.. + ...|++|+.+. ++|||||
T Consensus 98 ~~~~v~~i~l~~--~~~~g~~v~v~G~p~~~~~~~~l-~~~----~g~v~~~----~----~~~i~~~~~~~~GdSGGPl 162 (210)
T 2as9_A 98 FNENVQAFNFAK--DAKVDDKIKVIGYPLPAQNSFKQ-FES----TGTIKRI----K----DNILNFDAYIEPGNSGSPV 162 (210)
T ss_dssp GGGSCCCCCBCS--CCCTTCEEEEEECSSTTTTTSCC-EEE----EEEEEEE----E----TTEEEEECCCCTTCTTCEE
T ss_pred cccccceeecCC--CCCCCCEEEEEeCCCCCCCCcce-EEe----eeEEccc----c----CCeEEEcCccCCCCccCcE
Confidence 012345577753 47899999999999765431100 111 2222211 1 13567887763 3699999
Q ss_pred EcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcC
Q 001280 796 TDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISG 844 (1108)
Q Consensus 796 ~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~ 844 (1108)
+|.+|+|+||.+..... .+....+ +++|++.++++++.....
T Consensus 163 v~~~g~lvGI~s~g~~~-----~~~~~~~--~~~~~~~i~~f~~~~~~~ 204 (210)
T 2as9_A 163 LNSNNEVIGVVYGGIGK-----IGSEYNG--AVYFTPQIKDFIQKHIEQ 204 (210)
T ss_dssp ECTTSCEEEEECCSCCC-----TTCSSEE--EEECCHHHHHHHHTTCCC
T ss_pred ECCCCeEEEEEeccccc-----CCccccc--cEEEcHHHHHHHHHhhhh
Confidence 99999999998764332 1223333 669999999999887654
No 61
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...
Probab=99.37 E-value=1.4e-12 Score=135.72 Aligned_cols=161 Identities=20% Similarity=0.317 Sum_probs=109.1
Q ss_pred cEEE-EEEEeC-CCcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEc-CCCceEEEEECCCCcccc-cccCCCCC-Cc
Q 001280 68 SYAT-GFVVDK-RRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSAIQFL-NYDEIPLA-PE 142 (1108)
Q Consensus 68 ~~GS-GfvV~~-~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d-~~~DlAlLk~d~~~~~~~-~~~~l~l~-~~ 142 (1108)
+.|| ||++.. .++|||||+||+.. ...+.+.+.+...+ +++...+ +.+|+||||++...+.+- .+.++++. ..
T Consensus 12 ~~ct~Gf~v~~~~~~~ilTaaHcv~~-~~~~~v~~~~~~~~-g~~~~~~~~~~DiAll~l~~~~~~~~~~v~~~~l~~~~ 89 (185)
T 2qa9_E 12 GRCSLGFNVRSGSTYYFLTAGHCTDG-ATTWWANSARTTVL-GTTSGSSFPNNDYGIVRYTNTTIPKDGTVGGQDITSAA 89 (185)
T ss_dssp CEEECCEEEEETTEEEEEECHHHHTT-CSEEESSTTSCSEE-EEEEEEECSBSCEEEEEECCSSSCCCCEETTEECCEEC
T ss_pred CcEeccEEEEECCceEEEECcccCCC-CCcEEecCCCceEe-EEEeccccCCCCEEEEEecCCCccccCccceeeeCCcc
Confidence 4566 999963 24699999999995 44555544444443 5556677 899999999986333221 12334443 35
Q ss_pred ccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeecccC
Q 001280 143 AACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS 222 (1108)
Q Consensus 143 ~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~ 222 (1108)
.+..|+.+.++|++.+ .+.|.+....... .+.... .+ ..+++.+..+.+|+|||||++.+ ++|||++++..
T Consensus 90 ~~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v-~~~~~~--~~-~~~~~~~~cac~GDSGGPlv~~~-~~vGI~s~g~~ 160 (185)
T 2qa9_E 90 NATVGMAVTRRGSTTG----THSGSVTALNATV-NYGGGD--VV-YGMIRTNVCAEPGDSGGPLYSGT-RAIGLTSGGSG 160 (185)
T ss_dssp CCCTTCEEEEEETTTE----EEEEEEEEEEEEE-ECSTTC--EE-EEEEEESCCCCTTCTTCEEEETT-EEEEEEEEEEE
T ss_pred cCCCCCEEEEecCCCc----eeEeEEEEEEEEE-EcCCCC--EE-eceEEecccCCCCCccceEEECC-EEEEEEEecCC
Confidence 6789999999999754 4567777665443 111111 01 13577888889999999999875 99999987642
Q ss_pred C---CCcccccChHHHHHHH
Q 001280 223 S---SASAFFLPLERVVRAL 239 (1108)
Q Consensus 223 ~---~~~~falPi~~i~~~l 239 (1108)
. ...+++.|++..+..+
T Consensus 161 ~~~~~~p~vyt~v~~~~~wI 180 (185)
T 2qa9_E 161 NCSSGGTTFFQPVTEALSAY 180 (185)
T ss_dssp ETTTEEEEEEEEHHHHHHHH
T ss_pred CCCCCCcEEEEEHHHHHHhh
Confidence 1 2468889998887765
No 62
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...
Probab=99.33 E-value=1e-11 Score=130.20 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=108.4
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee----c
Q 001280 649 FFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR----A 723 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~----~ 723 (1108)
...+||++.+ ...+|||||.| |......+. .+ + .+.|++++.| |..|+||||++...... ..+. .
T Consensus 16 ~CT~Gf~v~~-~~~~~ilTa~H-c~~~~~~v~---~~-~-~~~g~vv~~~~~~~D~Avi~i~~~~~~~---~~v~~~g~~ 85 (198)
T 2h5c_A 16 LCSVGFSVTR-GATKGFVTAGH-CGTVNATAR---IG-G-AVVGTFAARVFPGNDRAWVSLTSAQTLL---PRVANGSSF 85 (198)
T ss_dssp EEECCEEEEE-TTEEEEEECGG-GCCTTCEEE---ET-T-EEEEEEEEEECSBSCEEEEEECTTSEEE---EEEEETTEE
T ss_pred CCCcCEEEec-CCeeEEEECcc-cCCCCCEEE---eC-C-cEEEEEEecCCCCCCEEEEEeCCCCccC---ceEecCCce
Confidence 4568999973 24689999955 555555554 44 4 8889999999 99999999998653211 1111 1
Q ss_pred cccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCcccc-ccceEEEEecccCC-CCCceEEcCCee
Q 001280 724 AELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRA-MNMEVIELDTDFGS-TFSGVLTDEHGR 801 (1108)
Q Consensus 724 ~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~-~~~~~I~~d~~ig~-~sGGpL~d~~G~ 801 (1108)
+++.....+++|+.|..+|+|.++ ..+.|+.+.... .|.. ....+||+|+.+++ +|||||+|.+|+
T Consensus 86 ~~v~g~~~~~vG~~V~~~G~~tg~----t~G~V~~~~~~~--------~~~~g~~~~~i~t~~~~~~GDSGGPl~~~~g~ 153 (198)
T 2h5c_A 86 VTVRGSTEAAVGAAVCRSGRTTGY----QCGTITAKNVTA--------NYAEGAVRGLTQGNACMGRGDSGGSWITSAGQ 153 (198)
T ss_dssp EECCBCCCCCTTCEEEEEETTTEE----EEEEEEEEEEEE--------EETTEEEEEEEEECSCCBTTCTTCEEECTTCB
T ss_pred EEecCcccCCCCCeEEEeecCcce----EEEEEEeeeeEE--------EeCCCeEeeeEEecccCCCCcceeEEEeeCCE
Confidence 244445568999999999999774 244555221100 1110 12368999998855 799999999999
Q ss_pred EEEEEeecc-cc--ccccCCCCCcceeEecccHHHHHHHH
Q 001280 802 VQAIWGSFS-TQ--VKFGCSSSEDHQFVRGIPIYTISRVL 838 (1108)
Q Consensus 802 VvGi~~~~~-~~--~~~~~~~~~~~~~~~aipi~~i~~vl 838 (1108)
++||+++.. .. .........+.. |++|++.++..+
T Consensus 154 ~vGI~s~~~~~~~~~~c~~~~~~g~~--f~~Pi~~vl~~~ 191 (198)
T 2h5c_A 154 AQGVMSGGNVQSNGNNCGIPASQRSS--LFERLQPILSQY 191 (198)
T ss_dssp EEEEEEEECCCTTSBSTTSCGGGCCE--EEEEHHHHHHHH
T ss_pred EEEEEEeecCccCCCccccccCCceE--EEEEHHHHHHHC
Confidence 999998742 11 000000122344 679999988754
No 63
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.25 E-value=3.8e-11 Score=150.20 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=111.8
Q ss_pred ceEEEEeecCCCHHhHh--ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEE--EEEEEeecccC
Q 001280 899 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGRE--IELQVGTDVRD 974 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a--L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~--~~v~v~~~~~~ 974 (1108)
.+++|..|.++|||+++ |+.||+|++|||+.+.++.+..........+ ..+.|+|.|++.. ..+++++....
T Consensus 89 ~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g----~~v~l~v~R~~~~~~~~~~v~l~k~~ 164 (721)
T 2xkx_A 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG----SIVRLYVMRRKPPAEKVMEIKLIKGP 164 (721)
T ss_pred CCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccc----cccceEEEecccccccceeeeeeeec
Confidence 56889999999999987 9999999999999999996544433223344 7899999998854 23444443211
Q ss_pred CCCCcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHc
Q 001280 975 GNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKE 1051 (1108)
Q Consensus 975 ~~~t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~ 1051 (1108)
.-+|+.+...... ...+ +..|++|+.|.+||||+++| |++||.|++|||+++.++ ++++..++.
T Consensus 165 --------~~lG~~i~~~~~~----~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 231 (721)
T 2xkx_A 165 --------KGLGFSIAGGVGN----QHIP-GDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN 231 (721)
T ss_pred --------CCCceeeccCCCc----cccC-CCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHc
Confidence 1145555432100 0012 13489999999999999999 999999999999999996 678888875
Q ss_pred CCCCceEEEEEEEeCCeEE
Q 001280 1052 IEHGEFVRVRTVHLNGKPR 1070 (1108)
Q Consensus 1052 ~~~~~~v~l~~v~rdg~~~ 1070 (1108)
.++.++|. +.|+|...
T Consensus 232 --~~~~v~l~-V~R~g~~~ 247 (721)
T 2xkx_A 232 --TYDVVYLK-VAKPSNAY 247 (721)
T ss_pred --CCCeEEEE-EEeCCccc
Confidence 36789998 78888754
No 64
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A
Probab=99.25 E-value=6.4e-12 Score=130.25 Aligned_cols=154 Identities=20% Similarity=0.274 Sum_probs=101.0
Q ss_pred cEEE-EEEEeCC-CcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEcCCCceEEEEECCCCcccccccCC-----CC-
Q 001280 68 SYAT-GFVVDKR-RGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEI-----PL- 139 (1108)
Q Consensus 68 ~~GS-GfvV~~~-~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d~~~~~~~~~~~l-----~l- 139 (1108)
+.|| ||+|..+ ++|||||+||+... ..+.+-..+ ....+..|+||||++......-.+..+ .+
T Consensus 12 ~~ct~G~~v~~~~~~~vlTaaHc~~~~-~~~~~G~~~--------~~~~~~~DiAlikl~~~~~~~~~v~~i~~~~~~~~ 82 (181)
T 2sga_A 12 SRCSLGFNVSVNGVAHALTAGHCTNIS-ASWSIGTRT--------GTSFPNNDYGIIRHSNPAAADGRVYLYNGSYQDIT 82 (181)
T ss_dssp EEEECCEEEEETTEEEEEECHHHHTTC-SEETTEEEE--------EEECSBSCEEEEEESCGGGCCCEEECSSSCEEECC
T ss_pred CcEeccEEEEECCceEEEECcccCCCC-Cceeeccee--------CCcCCCCCEEEEEccCCCcccceEEecCCcceeec
Confidence 4566 9999731 35999999999843 222211111 133477899999998632111012221 11
Q ss_pred CCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeec
Q 001280 140 APEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAG 219 (1108)
Q Consensus 140 ~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~ 219 (1108)
....+++|+.+.++|++.+ .+.|.++..++... +.... ....+++++..+.+|+|||||++.+ ++|||+++
T Consensus 83 ~~~~~~~G~~v~~~G~~~~----~t~G~v~~~~~~v~-~~~~~---~~~~~i~~~~c~~~GDSGGPlv~~~-~~vGI~s~ 153 (181)
T 2sga_A 83 TAGNAFVGQAVQRSGSTTG----LRSGSVTGLNATVN-YGSSG---IVYGMIQTNVCAQPGDSGGSLFAGS-TALGLTSG 153 (181)
T ss_dssp EECCCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-CGGGC---EEEEEEEESCCCCTTCTTCEEEETT-EEEEEEEE
T ss_pred ccccCCCCCEEEEeecCCC----ccEEEEEEeEEEEE-CCCCC---EEeeeEecccccCCCCCCCEEEECC-EEEEEEEe
Confidence 2466799999999998865 36677777765431 21111 0123578888889999999999876 99999988
Q ss_pred ccCC---CCcccccChHHHHHHH
Q 001280 220 SKSS---SASAFFLPLERVVRAL 239 (1108)
Q Consensus 220 ~~~~---~~~~falPi~~i~~~l 239 (1108)
+... ...+|+.|++.++..|
T Consensus 154 g~~~~~~~~~~v~~~v~~~~~~l 176 (181)
T 2sga_A 154 GSGNCRTGGTTFYQPVTEALSAY 176 (181)
T ss_dssp EEEETTTEEEEEEEEHHHHHHHH
T ss_pred eCCCCcCCCceEEEEHHHHHHhc
Confidence 6421 2568999998888765
No 65
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=99.23 E-value=7.1e-11 Score=128.21 Aligned_cols=166 Identities=18% Similarity=0.252 Sum_probs=106.9
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCCc-eEEEEeecCC-------------eEEeEEEEEeeC---CCcEEEEEECCC
Q 001280 649 FFGTGVIIYHSQSMGLVVVDKNTVAISAS-DVMLSFAAFP-------------IEIPGEVVFLHP---VHNFALIAYDPS 711 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G~IlTnr~~V~~~~~-~i~V~~~~~~-------------~~~~a~vv~~dp---~~dlAilk~d~~ 711 (1108)
..|+|++|+ +++|||++|++..... .+.|++.+ + ..+.++++..|| .+||||||++..
T Consensus 55 ~~c~G~lI~----~~~VLTAaHcv~~~~~~~~~v~~~~-G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~DiAll~l~~~ 129 (242)
T 1agj_A 55 TSATGVLIG----KNTVLTNRHIAKFANGDPSKVSFRP-SINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKPD 129 (242)
T ss_dssp EEEEEEECS----SSEEEECHHHHGGGTTCGGGEEEEE-TCEECTTSCEECTTCCEEEEEEESCTTCTTSCCEEEEECCC
T ss_pred ccEEEEEEe----CCEEEEChhhcccCCCCceEEEEec-CccccccccccccCCceeEEEEEeCCCCCCCcEEEEEEcCC
Confidence 589999999 5899999887653221 24566644 3 258899999999 899999999764
Q ss_pred CCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCce-eeeeeEeccccccccCCCCCCccccccceEEEEeccc-CC
Q 001280 712 SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQAT-SRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF-GS 789 (1108)
Q Consensus 712 ~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~-~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~i-g~ 789 (1108)
.........+.++.|.+...+..|+.++++|+|.+.... .....+. +. .+. ..++.++.. .+
T Consensus 130 ~~~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~~~l~~~~~~-------~~-----~~~----~~~~~~~~~c~G 193 (242)
T 1agj_A 130 QNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIE-------LT-----TLS----RGLRYYGFTVPG 193 (242)
T ss_dssp TTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTSTTCCEEEEEE-------EC-----CGG----GSEEEECCCCGG
T ss_pred CccccccccccceecCccccCCCCCEEEEEeCCCCCCCccceeeeee-------Ee-----cCC----ceEEEeCCcCCC
Confidence 310000023555788765557899999999999765421 1111111 00 011 124566655 22
Q ss_pred CCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHH-HHHHHHHHH
Q 001280 790 TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIY-TISRVLDKI 841 (1108)
Q Consensus 790 ~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~-~i~~vl~~l 841 (1108)
+|||||++.+|+|+||.+...+- .......++|+|++ .++++|++.
T Consensus 194 dSGGPl~~~~g~lvGI~s~g~~c------~~~~~~~~~~~~i~~~~~~~l~~~ 240 (242)
T 1agj_A 194 NSGSGIFNSNGELVGIHSSKVSH------LDREHQINYGVGIGNYVKRIINEK 240 (242)
T ss_dssp GTTCEEECTTSEEEEEEEEEEEC------SSTTCEEEEEEECCHHHHHHHHHH
T ss_pred CCchHhcccCCEEEEEEeccccc------cCcCCCceeeEEehHHHHHHHHhh
Confidence 58999999999999998763221 11223455778875 777777764
No 66
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=99.23 E-value=3e-11 Score=115.07 Aligned_cols=99 Identities=22% Similarity=0.361 Sum_probs=82.2
Q ss_pred ccCCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHH
Q 001280 257 SIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKL 335 (1108)
Q Consensus 257 ~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l 335 (1108)
.+.|+|||+.+..++...+++||++. ..+++...|++| ..|.++|||++ ||++||+|++|||+++.++.++
T Consensus 2 ~v~r~~lGi~~~~l~~~~~~~~~~~~-------~~~~~~~~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~ 73 (113)
T 2pzd_A 2 SHMRRYIGVMMLTLSPSILAELQLRE-------PSFPDVQHGVLI-HKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDV 73 (113)
T ss_dssp ---CEECCEEEEECCHHHHHHHHHHC-------SSCCCCSSCEEE-EEEBTTSHHHHHTCCTTCEEEEETTEECCSHHHH
T ss_pred cccccEeEEEEEeCCHHHHHHhcccc-------ccccCCCCCeEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCHHHH
Confidence 47899999999999999998888741 123334578777 69999999999 9999999999999999999999
Q ss_pred HHHHhcCCCCeEEEEEEECCEEEEEEE-ccc
Q 001280 336 ETLLDDGVDKNIELLIERGGISMTVNL-VQD 365 (1108)
Q Consensus 336 ~~~l~~~~g~~v~l~V~R~g~~~~~~v-~~~ 365 (1108)
..++.. ++.+.|+|.|+|+.+++++ +..
T Consensus 74 ~~~l~~--~~~v~l~v~R~g~~~~~~v~~~~ 102 (113)
T 2pzd_A 74 YEAVRT--QSQLAVQIRRGRETLTLYVTPEV 102 (113)
T ss_dssp HHHHHH--CSSEEEEEEETTEEEEEEECCEE
T ss_pred HHHHhC--CCeEEEEEEECCEEEEEEEEEee
Confidence 888865 6889999999999998888 543
No 67
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.19 E-value=5.7e-12 Score=146.09 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=50.8
Q ss_pred eEEEEeecCCCHHhHh--ccCCCEEEEECCEEcCCh--hHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecccCC
Q 001280 900 VLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCF--HDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDG 975 (1108)
Q Consensus 900 ~~~V~~V~~~s~A~~a--L~~GDiIlsVnG~~V~~~--~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~~ 975 (1108)
+++|..|.++|||+++ |+.||+|++|||+++.+| .++..++.....+ ..+.++|.|++...++.+.....
T Consensus 233 g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~----~~v~l~v~r~~~~~~v~l~~~~~-- 306 (388)
T 3suz_A 233 TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQ----TQVKLNIVSCPPVTTVLIKRPDL-- 306 (388)
T ss_dssp CCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTC----SCEEEEEEECCSCC-----------
T ss_pred CEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCC----CccccccccccccceeeEeecCC--
Confidence 4679999999999987 999999999999999998 5666666443343 67999999988776655432111
Q ss_pred CCCcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCC
Q 001280 976 NGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIE 1053 (1108)
Q Consensus 976 ~~t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~ 1053 (1108)
...+|+.+. +.+|..|.+||||+++||++||.|++|||+++. +++++++.+++
T Consensus 307 ------~~~lG~~i~-----------------~g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-- 361 (388)
T 3suz_A 307 ------KYQLGFSVQ-----------------NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-- 361 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CCccceEEe-----------------cCEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh--
Confidence 112333321 237899999999999999999999999999997 56889988886
Q ss_pred CCceEEEE
Q 001280 1054 HGEFVRVR 1061 (1108)
Q Consensus 1054 ~~~~v~l~ 1061 (1108)
.+..+.|+
T Consensus 362 ~~~~v~L~ 369 (388)
T 3suz_A 362 SVGEIHMK 369 (388)
T ss_dssp --------
T ss_pred CCCeEEEE
Confidence 35666666
No 68
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=99.17 E-value=4.9e-11 Score=113.43 Aligned_cols=100 Identities=18% Similarity=0.299 Sum_probs=83.1
Q ss_pred ccCCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHH
Q 001280 257 SIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKL 335 (1108)
Q Consensus 257 ~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l 335 (1108)
.+.|++||+.+..++...++.||++. ..++....|++| ..|.++|||++ ||++||+|++|||+++.++.++
T Consensus 2 ~v~~~~lGi~~~~l~~~~~~~~~~~~-------~~~~~~~~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~ 73 (112)
T 2p3w_A 2 SHMKRFIGIRMRTITPSLVDELKASN-------PDFPEVSSGIYV-QEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSEL 73 (112)
T ss_dssp CCCEEECCEEEEECCHHHHHHHHHHC-------TTC--CCSSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECCSHHHH
T ss_pred CcccceeeEEEecCCHHHHHHhcccC-------cCcccCCCCeEE-EEECCCChHHHCCCCCCCEEEEECCEECCCHHHH
Confidence 47889999999999999888888741 112223578887 69999999999 9999999999999999999999
Q ss_pred HHHHhcCCCCeEEEEEEECCEEEEEEE-cccc
Q 001280 336 ETLLDDGVDKNIELLIERGGISMTVNL-VQDL 366 (1108)
Q Consensus 336 ~~~l~~~~g~~v~l~V~R~g~~~~~~v-~~~~ 366 (1108)
...+. .|+.+.|+|.|+|+.+++++ +...
T Consensus 74 ~~~l~--~g~~v~l~v~R~g~~~~~~v~~~~~ 103 (112)
T 2p3w_A 74 QEAVL--TESPLLLEVRRGNDDLLFSIAPEVV 103 (112)
T ss_dssp HHHHH--HCSSEEEEEEETTEEEEEEECCEEE
T ss_pred HHHHh--CCCeEEEEEEECCEEEEEEEEEeee
Confidence 88873 47889999999999988888 6544
No 69
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=99.16 E-value=8.1e-11 Score=123.82 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=92.3
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCC---ceEEEEe----ecCCeEEeE-EEEEeeCCCcEEEEEECCCCCCcc-ccc
Q 001280 649 FFGTGVIIYHSQSMGLVVVDKNTVAISA---SDVMLSF----AAFPIEIPG-EVVFLHPVHNFALIAYDPSSLGVA-GAS 719 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G~IlTnr~~V~~~~---~~i~V~~----~~~~~~~~a-~vv~~dp~~dlAilk~d~~~l~~~-~~~ 719 (1108)
..|+||+|+ +++|||++|++.... ..+.+.+ .+ +..+++ +++..|+.+||||||++...+++. --.
T Consensus 22 ~~c~G~lI~----~~~VLTaaHcv~~~~~~~~~v~v~~~~~~~~-~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~ 96 (200)
T 2w7s_A 22 VGGTGVVVG----KNTIVTNKHIAKSNDIFKNRVSAHHSSKGKG-GGNYDVKDIVEYPGKEDLAIVHVHETSTEGLNFNK 96 (200)
T ss_dssp TTEEEEEEE----TTEEEECHHHHHHHHHTTCCEEETCCSSSCC-CCEECEEEEEECSSSSSCEEEEECSBCTTSCBGGG
T ss_pred ceEEEEEEE----CCEEEEChhhcCCcccCCcEEEEEecCccCC-CcEEEEEEEecCCCcceEEEEEECCCCCCcccccc
Confidence 369999999 579999977764211 2355544 33 667887 588889999999999976533211 112
Q ss_pred ceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccceEEEEeccc-CCCCCceEEcC
Q 001280 720 VVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF-GSTFSGVLTDE 798 (1108)
Q Consensus 720 ~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~i-g~~sGGpL~d~ 798 (1108)
.++++.|.. .+..|+.++++|+|.+...... -.++ .+.++.. + ..++++++.. .++|||||+|.
T Consensus 97 ~v~pi~l~~--~~~~g~~v~v~G~p~g~~~~~~-~~~~----~g~v~~~----~----~~~~~~~~~~~~GdSGGPl~~~ 161 (200)
T 2w7s_A 97 NVSYTKFAD--GAKVKDRISVIGYPKGAQTKYK-MFES----TGTINHI----S----GTFMEFDAYAQPGNSGSPVLNS 161 (200)
T ss_dssp SCCCCCBCC--CCCTTCEEEEEECTTHHHHTSC-EEEE----EEEEEEE----E----TTEEEECSCCCTTCTTCEEECT
T ss_pred cccceeccc--cCCCCCEEEEEECCCCCCCccc-eEEe----EEEEEcc----C----CCEEEEcceeCCCCccCeEECc
Confidence 466677753 3789999999999975432110 0111 2222211 1 1346777766 33599999999
Q ss_pred CeeEEEEEeec
Q 001280 799 HGRVQAIWGSF 809 (1108)
Q Consensus 799 ~G~VvGi~~~~ 809 (1108)
+|+|+||.+..
T Consensus 162 ~g~lvGI~s~g 172 (200)
T 2w7s_A 162 KHELIGILYAG 172 (200)
T ss_dssp TSCEEEEEEEE
T ss_pred CCEEEEEEecc
Confidence 99999998763
No 70
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=99.15 E-value=3.7e-11 Score=121.98 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=73.8
Q ss_pred CccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEEEEEEcCCCceEEEEECC--CCcccccccCCCCCCcc
Q 001280 66 GASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP--SAIQFLNYDEIPLAPEA 143 (1108)
Q Consensus 66 ~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~vv~~d~~~DlAlLk~d~--~~~~~~~~~~l~l~~~~ 143 (1108)
..+.|+||.++. +++|||++|||.+. .. .++ .++.++. +++|+..|+|++++.. ..+|.++++. ..
T Consensus 28 ~~GsGt~F~i~g-~~~VvTA~HVVg~~-~~-vVt-~~g~r~~---~~f~~~~D~All~i~~~~g~~P~lKlA~-----~~ 95 (213)
T 3fan_A 28 SMGSGGVFTIDG-KIKCVTAAHVLTGN-SA-RVS-GVGFNQM---LDFDVKGDFAIADCPNWQGVAPKAQFCE-----DG 95 (213)
T ss_dssp SEEEEEEEEETT-EEEEEEEGGGSBTT-EE-EEE-ETTEEEE---EECEEETTEEEEECTTCCSCCCBCCBCC-----TT
T ss_pred CCCceEEEEECC-cEEEEEeccEeCCC-CE-EEe-cCCcEEE---EEecCCCcEEEEEccCcCCCCCcceeee-----ee
Confidence 467889999985 68999999999954 33 444 5665654 4779999999999963 4556555542 11
Q ss_pred cCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCCCCCceecccCcEEEEeeccc
Q 001280 144 ACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1108)
Q Consensus 144 ~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1108)
..|...+..-+ -...|.+. . ++ .+.+ ..+|+|||||+|.+|+||||+++..
T Consensus 96 -~~G~a~~~~~~------gv~~G~i~----~----------~~---al~~---T~pGdSGsPVvn~dG~VIGVHt~s~ 146 (213)
T 3fan_A 96 -WTGRAYWLTSS------GVEPGVIG----N----------GF---AFCF---TACGDSGSPVITEAGELVGVHTGSN 146 (213)
T ss_dssp -CCEEEEEEETT------EEEEEEEE----T----------TE---EEES---SCCCSTTCEEEETTSCEEEEEEC--
T ss_pred -ccCceEEEEcc------Cccccccc----c----------CC---EEEe---cCCCCCCCccCCCCCcEEEEEeccC
Confidence 12222222111 11222221 0 00 1111 2689999999999999999998754
No 71
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.15 E-value=1.6e-10 Score=144.47 Aligned_cols=142 Identities=16% Similarity=0.195 Sum_probs=101.8
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHH-HhcCCCCeEEEEEEECCEE--EEEEE-ccccccc
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETL-LDDGVDKNIELLIERGGIS--MTVNL-VQDLHSI 369 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~-l~~~~g~~v~l~V~R~g~~--~~~~v-~~~~~~~ 369 (1108)
..|++| ..|.++|||++ | |+.||+|++|||+.+.++.+.+.. +....|+.|.|+|.|++.. ..+++ +..-
T Consensus 88 ~~g~~V-~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~~~~~~v~l~k~--- 163 (721)
T 2xkx_A 88 DPSIFI-TKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG--- 163 (721)
T ss_pred CCCeEE-EEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccccccceEEEecccccccceeeeeeee---
Confidence 467777 79999999999 9 999999999999999998654432 2345688999999998854 23444 3211
Q ss_pred CCCcccccCCeEEccCCHHHhhccCcC-CCeEEEE--CCCChhHHcC-CCCCCEEEEeCCeecCCH--HHHHHHHHhcCC
Q 001280 370 TPDYFLEVSGAVIHPLSYQQARNFRFP-CGLVYVA--EPGYMLFRAG-VPRHAIIKKFAGEEISRL--EDLISVLSKLSR 443 (1108)
Q Consensus 370 ~~~~~~~~~G~~~~~l~~q~~~~~~~~-~~gv~v~--~~~~~a~~aG-l~~Gd~I~~Vng~~v~~l--~~~~~~i~~~~~ 443 (1108)
..-.|+.+....... ..+ ..|++|. .++++|+++| |+.||+|++|||+++.++ .+++..++..
T Consensus 164 -----~~~lG~~i~~~~~~~----~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-- 232 (721)
T 2xkx_A 164 -----PKGLGFSIAGGVGNQ----HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-- 232 (721)
T ss_pred -----cCCCceeeccCCCcc----ccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcC--
Confidence 112466554432211 111 3588988 4899999999 999999999999999986 5778777763
Q ss_pred CCeEEEEEe
Q 001280 444 GARVPIEYS 452 (1108)
Q Consensus 444 ~~~v~l~~~ 452 (1108)
++.|.|++.
T Consensus 233 ~~~v~l~V~ 241 (721)
T 2xkx_A 233 YDVVYLKVA 241 (721)
T ss_pred CCeEEEEEE
Confidence 334444443
No 72
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=99.12 E-value=1.2e-09 Score=120.76 Aligned_cols=175 Identities=14% Similarity=0.199 Sum_probs=110.8
Q ss_pred ccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCc---eEEEEee-------cCCeEEeEEEE
Q 001280 626 PTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISAS---DVMLSFA-------AFPIEIPGEVV 695 (1108)
Q Consensus 626 ~S~V~V~~~~~~~~~~dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~---~i~V~~~-------~~~~~~~a~vv 695 (1108)
+++|+|..... .....|+|++|+ ..+|||++|+|..... .+.|.+. ..+....++++
T Consensus 20 ~~~v~i~~~~~---------~~~~~C~G~lI~----~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~ 86 (274)
T 2o8l_A 20 APVTYIQVEAP---------TGTFIASGVVVG----KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQIT 86 (274)
T ss_dssp TTEEEEEEEET---------TEEEEEEEEEEE----TTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEE
T ss_pred ceEEEEEEEcC---------CCCEEEEEEEEE----CCEEEEChhhCcccCCCcceEEEEecccCcccccCccEEEEEEE
Confidence 55666655433 234689999999 5699999887754332 3777543 11445666777
Q ss_pred EeeCCCcEEEEEECCCC----CCcccccceeccccCCCccCCCCCEEEEEeeCCCCCce---eeeeeEeccccccccCCC
Q 001280 696 FLHPVHNFALIAYDPSS----LGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQAT---SRKSIVTNPCAALNISSA 768 (1108)
Q Consensus 696 ~~dp~~dlAilk~d~~~----l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~---~~~~~Vt~~~~~~~i~~~ 768 (1108)
..+..+||||||++... +. ..+.++.|.....+..|+.++++|+|.+.... ...+.++ ..
T Consensus 87 ~~~~~~DIALLkL~~~~~~~~~~----~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~---------~~ 153 (274)
T 2o8l_A 87 KYSGEGDLAIVKFSPNEQNKHIG----EVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKIT---------YL 153 (274)
T ss_dssp ECSSSSCCEEEEECCCTTSCCTT----TSSCCCEECCCTTCCTTCEEEEEECCTTSSTTCEEEEEEEEE---------EE
T ss_pred eCCCCCcEEEEEecCcccccccc----cccccccccccccccCCCEEEEEECCCCCCCceEEecCceEE---------ec
Confidence 77788999999997542 22 34566788765557899999999999764321 1122222 10
Q ss_pred CCCccccccceEEEEeccc-CCCCCceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcC
Q 001280 769 DCPRYRAMNMEVIELDTDF-GSTFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISG 844 (1108)
Q Consensus 769 ~~~~y~~~~~~~I~~d~~i-g~~sGGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~ 844 (1108)
...+++.++.. .+.|||||++.+|+|+||.+..... ..... +.+. ..++.+|++....
T Consensus 154 --------~~~~i~~~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~-------~~~~~--~~~~-~~~~~wI~~~i~~ 212 (274)
T 2o8l_A 154 --------KGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPN-------EFNGA--VFIN-ENVRNFLKQNIED 212 (274)
T ss_dssp --------ETTEEEESCCCCTTCTTCEEECTTSCEEEEEEEEETT-------TEEEE--EECC-HHHHHHHHHHCTT
T ss_pred --------CCCeEEeCcccCCCCchhheeccCCeEEEEEeCcccC-------CCCce--EEec-HHHHHHHHHHHhh
Confidence 11345666665 3359999999999999998763211 11223 3353 5566777665443
No 73
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.11 E-value=2e-11 Score=141.57 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=52.0
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhc-CCCCeEEEEEEECCEEEEEEE-cccccccC
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDD-GVDKNIELLIERGGISMTVNL-VQDLHSIT 370 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~v-~~~~~~~~ 370 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.+| .++..++.. ..+..+.|+|.|++...++.+ ..+.
T Consensus 232 ~g~~V-~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~~v~l~~~~~---- 306 (388)
T 3suz_A 232 PTVIL-ANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDL---- 306 (388)
T ss_dssp CCCBC-CCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC-------------
T ss_pred CCEEE-EeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccccccccceeeEeecCC----
Confidence 35666 79999999999 8 999999999999999999 567777754 366789999999887666554 2111
Q ss_pred CCcccccCCeEEccCCHHHhhccCcCCCeEEEE--CCCChhHHcCCCCCCEEEEeCCeecC--CHHHHHHHHHhc
Q 001280 371 PDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAGVPRHAIIKKFAGEEIS--RLEDLISVLSKL 441 (1108)
Q Consensus 371 ~~~~~~~~G~~~~~l~~q~~~~~~~~~~gv~v~--~~~~~a~~aGl~~Gd~I~~Vng~~v~--~l~~~~~~i~~~ 441 (1108)
....|+. ..+.+|. .++++|+++||++||+|++|||+++. +++++++.+++.
T Consensus 307 ----~~~lG~~---------------i~~g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~ 362 (388)
T 3suz_A 307 ----KYQLGFS---------------VQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNS 362 (388)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ----CCccceE---------------EecCEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 0112222 1222454 48999999999999999999999997 568889888874
No 74
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}
Probab=99.10 E-value=6.7e-10 Score=114.65 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=106.7
Q ss_pred CceEEEEEeeeeccCCCCCCccEEEEEEEeCCCc--EEEEcccccCCCCeEEEEEecCCeEEe-----EEEEEEcCCCce
Q 001280 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRG--IILTNRHVVKPGPVVAEAMFVNREEIP-----VYPIYRDPVHDF 119 (1108)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G--~ILTn~HVV~~~~~~~~v~~~d~~~~~-----a~vv~~d~~~Dl 119 (1108)
++||.|... . .-.|+|++|.. +| +|||++||+..+... .....++..++ ...-..|+..||
T Consensus 16 ~svv~l~~~--------d--~h~G~g~~V~~-~G~~~LlTA~Hv~~~~~~~-~~~~k~g~~ip~~~~~~~~~~~d~~~D~ 83 (191)
T 1zyo_A 16 ASLVAIKSG--------P--TTIGFGCRTKI-DGEDCLLTAHHVWCNSMRP-TGLAKAGKQVSVEDWEISMSSSDKMLDF 83 (191)
T ss_dssp SSEEEEEET--------T--EEEEEEEEEEC---CEEEEECHHHHTSSSCC-CEEEETTEEEECCSCEEEEEECCTTTCE
T ss_pred CeEEEEEeC--------C--eEEEEEEEEEE-CCCcEEEEChhhCcCCcce-eeecCCCCEEEcccceeeEccCCCCCcE
Confidence 457888762 1 55788999973 55 999999999864222 22234555544 444455789999
Q ss_pred EEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCC
Q 001280 120 GFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKG 199 (1108)
Q Consensus 120 AlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~ 199 (1108)
||+++++.-...+....+.|.+ +..++.|.++|++....+....|+....+. ...++..+++.+
T Consensus 84 all~vp~~~~s~lg~~~a~~~~--~~~~~~vt~yg~~~~~~~~s~~g~~~~~~~--------------~~~~~~~~~T~~ 147 (191)
T 1zyo_A 84 AIVRVPTHVWSKLGVKSTPLVC--PSSKDVITCYGGSSSDCLMSGVGSSSTSEF--------------TWKLTHTCPTAA 147 (191)
T ss_dssp EEEECCHHHHHHHTCCCCCBCC--CCSCEEEEEEEESSTTSEEEEEEEEEECSS--------------TTEEEECCCCCT
T ss_pred EEEEcCCChhhhcCcceeEeec--CCCCccEEEEeecCCCCEeecccceeeccC--------------CcEEEEEcCCCC
Confidence 9999976421112233333322 236999999999876554444553222110 114899999999
Q ss_pred CCCCCceecccCcEEEEeecccCCCCcccccChHHHHHH
Q 001280 200 GSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRA 238 (1108)
Q Consensus 200 G~SGgPv~n~~G~vVGi~~~~~~~~~~~falPi~~i~~~ 238 (1108)
|.||+|+||.+ .+|||+.+.......+.++-+..++.+
T Consensus 148 G~SGsP~~ng~-~IVGvh~G~~~~~~~N~a~n~~~~~~~ 185 (191)
T 1zyo_A 148 GWSGTPLYSSR-GVVGMHVGFEEIGKLNRGVNMFYVANY 185 (191)
T ss_dssp TCTTCEEECSS-CEEEEEEEEEETTTEEEEECHHHHHHH
T ss_pred CCCCCcEEcCC-eEEEEEeCcccCCceeeeeehHHHhhh
Confidence 99999999986 789999987554566777777777665
No 75
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Probab=99.10 E-value=4.2e-10 Score=117.07 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=102.1
Q ss_pred eeEEEEEEEeeCCce--EEEEeCceecCCCceEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee---
Q 001280 649 FFGTGVIIYHSQSMG--LVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR--- 722 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G--~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~--- 722 (1108)
...+||++.. .+| |||||.|++.. ...+ ++. . +.|++++.| |.+|+||||++...... ..|.
T Consensus 14 ~CTsGf~v~~--~~G~~~ilTa~Hc~~~-g~~v--~~~--d--~~g~v~~~~~p~~DiAlikl~~~~~~~---~~v~~~g 81 (188)
T 2oua_A 14 RCSVGFAATN--ASGQPGFVTAGHCGSV-GTQV--SIG--N--GRGVFERSVFPGNDAAFVRGTSNFTLT---NLVSRYN 81 (188)
T ss_dssp EEECCEEEEC--TTCCEEEEECGGGCCT-TCEE--EET--T--EEEEEEEEECSBSCEEEEEEEESCEEE---EEEECGG
T ss_pred cEecCEEEEe--CCCCEEEEECcccCCC-CCEE--Eec--C--ceEEEEeeCCCCCCEEEEEeCCCCccc---cceeecC
Confidence 5679999972 366 99999665533 3333 344 2 889999999 99999999997653211 1121
Q ss_pred ---ccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCcccc-ccceEEEEecccCC-CCCceEEc
Q 001280 723 ---AAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRA-MNMEVIELDTDFGS-TFSGVLTD 797 (1108)
Q Consensus 723 ---~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~-~~~~~I~~d~~ig~-~sGGpL~d 797 (1108)
.+++..+..++.|+.|..+|+|.+.. .+.|+.+... + .|.. ....+++++...++ .|||||+.
T Consensus 82 ~~~~~~l~~~~~~~vG~~v~~~G~~tG~t----~G~v~~~~~~--v------~~~~~~~~~~~~~~~~~~~GDSGgpl~~ 149 (188)
T 2oua_A 82 SGGYATVSGSSTAPIGSQVCRSGSTTGWY----CGTIQARNQT--V------SYPQGTVHSLTRTSVCAEPGDSGGSFIS 149 (188)
T ss_dssp GCSEEECCBCCCCCTTCEEEEEETTTEEE----EEEEEEEEEE--E------EETTEEEEEEEEESCCCCTTCTTCEEEE
T ss_pred CcceEeccCccCCCCCCeEEEEEcCCCeE----EEEEEEEeeE--E------EeCCCcEeeeEeeeeecCCCCccceEEE
Confidence 23566555689999999999997742 3455422101 0 1110 11256788877744 69999995
Q ss_pred CCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHH
Q 001280 798 EHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 838 (1108)
Q Consensus 798 ~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl 838 (1108)
+|+++||++..... ....+.. |++|++.+++.+
T Consensus 150 -~~~~vGi~s~~~~~-----~~~~~~~--~~~pi~~~l~~~ 182 (188)
T 2oua_A 150 -GTQAQGVTSGGSGN-----CRTGGTT--FYQEVNPMLNSW 182 (188)
T ss_dssp -TTEEEEEEEEEEEE-----TTTEEEE--EEEESHHHHHHT
T ss_pred -CCEEEEEEeccCCC-----CCCCCce--EEEEHHHHHHHc
Confidence 88999998864321 1122334 669998887643
No 76
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.07 E-value=6.2e-11 Score=115.57 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=85.0
Q ss_pred CeEEEEEEeCCEEEEEEEeecccCCCCCcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcCCCCCCE
Q 001280 951 GKLDITIFRQGREIELQVGTDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQW 1030 (1108)
Q Consensus 951 ~~v~l~V~R~g~~~~v~v~~~~~~~~~t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~ 1030 (1108)
+++.++|+|+|+++++++++... ..+|+.+.... .. ..+++|..|.++|||+++||++||+
T Consensus 9 ~~v~l~v~R~g~~~~v~v~~~~~---------~~lG~~~~~~~-------~~---~~gv~V~~V~~~spA~~aGL~~GD~ 69 (128)
T 1uf1_A 9 RRSTLHLLQGGDEKKVNLVLGDG---------RSLGLTIRGGA-------EY---GLGIYITGVDPGSEAEGSGLKVGDQ 69 (128)
T ss_dssp TSCCSCCCCCSSEEEEEEECCSS---------CCCCEEEECCT-------TT---TCCCEEEEECTTCHHHHHTCCTTCE
T ss_pred CEEEEEEEeCCcEEEEEEEECCC---------CccCEEEECcc-------cC---CCCEEEEEECCCCHHHHCCCCCCCE
Confidence 77899999999999999988542 12466654421 01 1278999999999999999999999
Q ss_pred EEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEeCCccCc
Q 001280 1031 IVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQDLHYWP 1082 (1108)
Q Consensus 1031 I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~d~~y~p 1082 (1108)
|++|||+++.++++ .++++.+..++.+.|. +.|+|+...++++++..-|-
T Consensus 70 I~~vng~~v~~~~~-~~~~~~~~~~~~v~l~-v~R~g~~~~~~v~~~~~~w~ 119 (128)
T 1uf1_A 70 ILEVNGRSFLNILH-DEAVRLLKSSRHLILT-VKDVGRLPHARTTVDETKWI 119 (128)
T ss_dssp EEEETTEECSSCCH-HHHHHHHTTCSEEEEE-EECCSCCSSCSCCCCSSCSC
T ss_pred EEEECCEECCCCCH-HHHHHHHhcCCeEEEE-EEECCcccccccccccccee
Confidence 99999999999754 4444444447789998 89999988777777665543
No 77
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Probab=99.06 E-value=2.7e-10 Score=123.96 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=88.2
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCC---ceEEEEeecC-----------CeEEeEEEEEeeC---CCcEEEEEECCC
Q 001280 649 FFGTGVIIYHSQSMGLVVVDKNTVAISA---SDVMLSFAAF-----------PIEIPGEVVFLHP---VHNFALIAYDPS 711 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G~IlTnr~~V~~~~---~~i~V~~~~~-----------~~~~~a~vv~~dp---~~dlAilk~d~~ 711 (1108)
..|+||+|+ +++|||++|++.... ..+.+..... ...+.++.+..|| .+|||||+++..
T Consensus 48 ~~c~G~lI~----~~~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp~~~~~DiALLkl~~~ 123 (246)
T 1qtf_A 48 TLATGVLIG----KNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPN 123 (246)
T ss_dssp EEEEEEEEE----TTEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTCTTSCCEEEEECCC
T ss_pred ceEEEEEEE----CCEEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCCCCCCCCEEEEEEeCC
Confidence 579999999 579999977764322 2344443210 0478899999999 999999999765
Q ss_pred CCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCcee-eeeeEeccccccccCCCCCCccccccceEEEEeccc-CC
Q 001280 712 SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATS-RKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF-GS 789 (1108)
Q Consensus 712 ~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~-~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~i-g~ 789 (1108)
.........+.++.|.+...+..|+.++++|+|.+..... ....+. +.. . ++.++.+ .+
T Consensus 124 ~~~~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g~~~~~~~~~~~~-------~~~----~--------~~~~~~~~~G 184 (246)
T 1qtf_A 124 EKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQSQIE-------MFN----D--------SQYFGYTEVG 184 (246)
T ss_dssp TTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTSTTCCEEEEEE-------ESS----S--------SBEESCCCGG
T ss_pred ccccccccceeeeecCCccccCCCCEEEEEECCCCCCCceeEeeeee-------ecC----c--------EEEeCCCCCC
Confidence 3110000134557887655578999999999998764210 000111 000 1 1223333 22
Q ss_pred CCCceEEcCCeeEEEEEee
Q 001280 790 TFSGVLTDEHGRVQAIWGS 808 (1108)
Q Consensus 790 ~sGGpL~d~~G~VvGi~~~ 808 (1108)
+|||||+|.+|+|+||.+.
T Consensus 185 dSGGPlv~~~g~lvGI~s~ 203 (246)
T 1qtf_A 185 NSGSGIFNLKGELIGIHSG 203 (246)
T ss_dssp GTTCEEECTTCCEEEEEEE
T ss_pred CchhheECCCCEEEEEEec
Confidence 4899999999999999875
No 78
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1
Probab=99.05 E-value=2.3e-09 Score=118.06 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=104.2
Q ss_pred eeeEEEEEEEeeCCceEEEEeCceecCCC---ceEEEEeec-------CCeEEeEEEEEeeCCCcEEEEEECCCCCCccc
Q 001280 648 HFFGTGVIIYHSQSMGLVVVDKNTVAISA---SDVMLSFAA-------FPIEIPGEVVFLHPVHNFALIAYDPSSLGVAG 717 (1108)
Q Consensus 648 ~~~GsG~iId~~~~~G~IlTnr~~V~~~~---~~i~V~~~~-------~~~~~~a~vv~~dp~~dlAilk~d~~~l~~~~ 717 (1108)
...|+|++|+ ..+|||++|++.... ..+.|.+.. .+....++++..+..+||||||++........
T Consensus 33 ~~~CgG~lI~----~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~~~~DIALLkL~~~~~~~~~ 108 (268)
T 1wcz_A 33 TFIASGVVVG----KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHI 108 (268)
T ss_dssp EEEEEEEECS----SSEEEECHHHHGGGTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECSSSSCCEEEEECCCTTSCCH
T ss_pred CEEEEEEEEE----CCEEEEChhhCCCccCCcceEEEEecccCcccccCCcEEEEEEecCCCCCcEEEEEecCccccccc
Confidence 4689999999 569999988765332 237775431 14455677777778899999999764310000
Q ss_pred ccceeccccCCCccCCCCCEEEEEeeCCCCCce---eeeeeEeccccccccCCCCCCccccccceEEEEeccc-CCCCCc
Q 001280 718 ASVVRAAELLPEPALRRGDSVYLVGLSRSLQAT---SRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF-GSTFSG 793 (1108)
Q Consensus 718 ~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~---~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~i-g~~sGG 793 (1108)
...+.++.|.....+..|+.++++|++.+.... ...+.++ .. ....|+.++.. .+.|||
T Consensus 109 ~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~---------~~--------~~~~i~~~~~~c~GdSGG 171 (268)
T 1wcz_A 109 GEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKIT---------YL--------KGEAMQYDLSTTGGNSGS 171 (268)
T ss_dssp HHHSCCCCBCCCSSCCTTCEEEEEECCTTSSTTCEEEEEEEEE---------EE--------ETTEEEESBCCCTTCTTC
T ss_pred ccccceeecccccccCCCCEEEEEECCCCCCCceEEeecceEE---------ee--------CCCeEEEecccCCCCccC
Confidence 124556788765557899999999999764321 1122222 10 11345666655 335999
Q ss_pred eEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHHcC
Q 001280 794 VLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISG 844 (1108)
Q Consensus 794 pL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~~~ 844 (1108)
||++.+|+|+||.+..... ..... +.+. ..++.+|++....
T Consensus 172 PLv~~~g~lvGIvS~G~~~-------~~~~~--~~~~-~~~~~wI~~~i~~ 212 (268)
T 1wcz_A 172 PVFNEKNEVIGIHWGGVPN-------EFNGA--VFIN-ENVRNFLKQNIED 212 (268)
T ss_dssp EEECTTSCEEEEEEEEETT-------TEEEE--EECC-HHHHHHHHHHCTT
T ss_pred eEEccCCEEEEEEeCCccC-------Cccee--EEcC-HHHHHHHHHHHHh
Confidence 9999999999998753211 11223 3354 5567777765543
No 79
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=99.05 E-value=3.5e-10 Score=107.60 Aligned_cols=100 Identities=20% Similarity=0.342 Sum_probs=79.5
Q ss_pred eeccccccCCchhhhhc-C----CCCCCCCeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCce
Q 001280 983 NWCGCIVQDPHPAVRAL-G----FLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEF 1057 (1108)
Q Consensus 983 ~~~G~~~~~p~~~vr~~-~----~lp~~~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~ 1057 (1108)
.|+|+.++.+..+.++. + ..+....|++|..+.++|||+++||++||.|++|||+++.++++|.+.++. ++.
T Consensus 6 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~---~~~ 82 (113)
T 2pzd_A 6 RYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT---QSQ 82 (113)
T ss_dssp EECCEEEEECCHHHHHHHHHHCSSCCCCSSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHHH---CSS
T ss_pred cEeEEEEEeCCHHHHHHhccccccccCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHhC---CCe
Confidence 46788888877666542 1 122234599999999999999999999999999999999999999999986 678
Q ss_pred EEEEEEEeCCeEEEEEEEeCCccCcceEE
Q 001280 1058 VRVRTVHLNGKPRVLTLKQDLHYWPTWEL 1086 (1108)
Q Consensus 1058 v~l~~v~rdg~~~~~~lk~d~~y~pt~el 1086 (1108)
+.|+ +.|+|+.+.+++++...-.++|.+
T Consensus 83 v~l~-v~R~g~~~~~~v~~~~~~~~~~~~ 110 (113)
T 2pzd_A 83 LAVQ-IRRGRETLTLYVTPEVTEGGGWTM 110 (113)
T ss_dssp EEEE-EEETTEEEEEEECCEEC---CCCC
T ss_pred EEEE-EEECCEEEEEEEEEeeccCCcEEE
Confidence 9998 799999999999886655555443
No 80
>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1
Probab=99.03 E-value=2.2e-09 Score=111.61 Aligned_cols=162 Identities=10% Similarity=0.082 Sum_probs=102.3
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee-----
Q 001280 649 FFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR----- 722 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~----- 722 (1108)
...+||+++. +..+|||||.| |..+...+ ++.+ +....+++...+ |..|+||||++...... ..+.
T Consensus 13 ~CT~Gfiv~~-~g~~~ilT~~H-v~~~~~~v--~~~~-~~~~~g~~~~~~~~~~DiAlikl~~~~~~~---~~v~~~~g~ 84 (187)
T 1hpg_A 13 RCSAAFNVTK-GGARYFVTAGH-CTNISANW--SASS-GGSVVGVREGTSFPTNDYGIVRYTDGSSPA---GTVDLYNGS 84 (187)
T ss_dssp EEECCEEEEE-TTEEEEEECHH-HHTTCSEE--ESST-TCCEEEEEEEEECSBSCEEEEEECSSCCCC---SEEECSSSC
T ss_pred cCcceEEEEE-CCeeEEEECcc-cCCCCCeE--EeCC-CceeEEEEeCccCCCCCEEEEEeCCCCCcC---ceEEecCCc
Confidence 4567999984 34589999955 55555544 4555 555557888777 89999999997642211 1111
Q ss_pred ccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccc-cccceEEEEecccCC-CCCceEEcCCe
Q 001280 723 AAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHG 800 (1108)
Q Consensus 723 ~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~-~~~~~~I~~d~~ig~-~sGGpL~d~~G 800 (1108)
..++..+..++.|+.|+++|++.+. ..+.|+.+.... .|. .....+|++|+.+.+ +|||||++.+
T Consensus 85 ~~~i~~~~~~~~G~~v~~~G~~~g~----t~G~v~~~~~~v--------~~~~~~~~~~i~t~~~~~~GdSGgpl~~~~- 151 (187)
T 1hpg_A 85 TQDISSAANAVVGQAIKKSGSTTKV----TSGTVTAVNVTV--------NYGDGPVYNMVRTTACSAGGDSGGAHFAGS- 151 (187)
T ss_dssp EEECCEECCCCTTCEEEEEETTTEE----EEEEEEEEEEEE--------EETTEEEEEEEEECCCCCTTCTTCEEEETT-
T ss_pred eeeeccccCCCCCCEEEEEEcCCCE----eEEEEEEeEEEE--------EeCCCeEeeeEEeccccCCCCCCCeEEECC-
Confidence 1233334458999999999999763 244555221111 111 112467999988744 7999999975
Q ss_pred eEEEEEeeccccccccCCCCCcceeEecccHHHHHHHH
Q 001280 801 RVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 838 (1108)
Q Consensus 801 ~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl 838 (1108)
+++||++..... ....... +++|++.++..+
T Consensus 152 ~~vGi~s~~~~~-----~~~~~~~--~~~~i~~~~~~l 182 (187)
T 1hpg_A 152 VALGIHSGSSGC-----SGTAGSA--IHQPVTEALSAY 182 (187)
T ss_dssp EEEEEEEEESCC-----BTTBCCC--EEEEHHHHHHHH
T ss_pred EEEEEEEeeCCC-----CCCCCce--EEEEHHHHHHHc
Confidence 999998764321 1122344 569998877644
No 81
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=99.01 E-value=8.4e-10 Score=104.81 Aligned_cols=97 Identities=13% Similarity=0.243 Sum_probs=78.7
Q ss_pred eeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCChhHHHHHHHh
Q 001280 864 ILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQA 942 (1108)
Q Consensus 864 ~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~ 942 (1108)
|||+.+..++...++.+|++.. ..+....+++|..|.++|||+++ |++||+|++|||+++.++.++..++.
T Consensus 7 ~lGi~~~~l~~~~~~~~~~~~~-------~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~- 78 (112)
T 2p3w_A 7 FIGIRMRTITPSLVDELKASNP-------DFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVL- 78 (112)
T ss_dssp ECCEEEEECCHHHHHHHHHHCT-------TC--CCSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHH-
T ss_pred eeeEEEecCCHHHHHHhcccCc-------CcccCCCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHh-
Confidence 8999999998877776654311 11222467889999999999999 99999999999999999999988772
Q ss_pred ccCCCCCCCeEEEEEEeCCEEEEEEEeecccC
Q 001280 943 LDKDGEDNGKLDITIFRQGREIELQVGTDVRD 974 (1108)
Q Consensus 943 ~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~~~ 974 (1108)
.+ +.+.++|.|+|+.+++++++...+
T Consensus 79 --~g----~~v~l~v~R~g~~~~~~v~~~~~~ 104 (112)
T 2p3w_A 79 --TE----SPLLLEVRRGNDDLLFSIAPEVVM 104 (112)
T ss_dssp --HC----SSEEEEEEETTEEEEEEECCEEEC
T ss_pred --CC----CeEEEEEEECCEEEEEEEEEeeeC
Confidence 34 679999999999999998876554
No 82
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Probab=98.97 E-value=5.7e-09 Score=109.82 Aligned_cols=164 Identities=9% Similarity=0.093 Sum_probs=99.2
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCC--ceEEEEe----ecCCeEEe-EEEEEeeCCCcEEEEEECCCCC-----Ccc
Q 001280 649 FFGTGVIIYHSQSMGLVVVDKNTVAISA--SDVMLSF----AAFPIEIP-GEVVFLHPVHNFALIAYDPSSL-----GVA 716 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G~IlTnr~~V~~~~--~~i~V~~----~~~~~~~~-a~vv~~dp~~dlAilk~d~~~l-----~~~ 716 (1108)
..|+||+|+ +.+|||++|++.... ..+.+.+ .+ +..+. ++++..++.+||||||++.... +..
T Consensus 22 ~~c~G~lI~----~~~VLTaaHcv~~~~~~~~v~v~~~~~~~~-~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~~ 96 (204)
T 2vid_A 22 KSATGFVVG----KNTILTNKHVSKNYKVGDRITAHPNSDKGN-GGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFN 96 (204)
T ss_dssp SSCEEEEEE----TTEEEECHHHHTTCCTTCEEEESCCSSSCC-SCEEEEEEEEECSSSSCCEEEEECSEEEEEETTEEE
T ss_pred eeEEEEEEE----CCEEEEChhHCCCccCCceEEEEeccccCC-CcEEEeeEEecCCCCCeEEEEEEcCccccccccccc
Confidence 369999999 569999977765433 2455532 23 44565 6778888899999999975311 000
Q ss_pred cccceeccccCCCccCCCCCEEEEEeeCCCCCce----eeeeeEeccccccccCCCCCCccccccceEEEEeccc-CCCC
Q 001280 717 GASVVRAAELLPEPALRRGDSVYLVGLSRSLQAT----SRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF-GSTF 791 (1108)
Q Consensus 717 ~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~----~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~i-g~~s 791 (1108)
-...+.++.|.+ .+..|+.++++|+|.+.... ...+.++ .. +...+..++.. .++|
T Consensus 97 ~~~~v~pi~l~~--~~~~g~~~~~~G~g~~~~~~~~~~~~~g~v~---------~~--------~~~~~~~~~~~~~GdS 157 (204)
T 2vid_A 97 FNDNVTPFKYAA--GAKAGERIKVIGYPHPYKNKYVLYESTGPVM---------SV--------EGSSIVYSAHTESGNS 157 (204)
T ss_dssp HHHHCCCCCBCS--CCCTTCEEEEEECCCCCC--CCCEEEEEEEE---------EE--------ETTEEEECCCCCGGGT
T ss_pred ccccccccccCC--cCCCCCEEEEEeCCCCCCCCcceEeeccEEe---------ec--------cCCeEEEecccCCCCc
Confidence 011345567764 37899999999999765321 1122222 10 11345666655 2358
Q ss_pred CceEEcCCeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHHH
Q 001280 792 SGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKII 842 (1108)
Q Consensus 792 GGpL~d~~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l~ 842 (1108)
||||++.+|+|+||.+..... .......|. .++...++++|++..
T Consensus 158 GGPl~~~~g~lvGI~s~g~~~-----~~~~~~~~~-~~~~~~~~~wI~~~~ 202 (204)
T 2vid_A 158 GSPVLNSNNELVGIHFASDVK-----NDDNRNAYG-VYFTPEIKKFIAENI 202 (204)
T ss_dssp TCEEECTTSCEEEEEEEECC--------CCCCEEE-ECCCHHHHHHHHHHS
T ss_pred cCcEECCCCeEEEEEecCccC-----CCcccccce-eEeCHHHHHHHHhhc
Confidence 999999999999998763321 011223331 123366777777654
No 83
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}
Probab=98.93 E-value=4.3e-09 Score=109.42 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=98.2
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee-----
Q 001280 649 FFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR----- 722 (1108)
Q Consensus 649 ~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~----- 722 (1108)
...+||+++ . |||||.|++ .+... |++.+ |++++.| |..|+||||++...... ..|.
T Consensus 16 ~CT~Gf~~~---~--~ilTa~Hc~-~~~~~--v~~~d------g~v~~~~~~~~DiAlikl~~~~~~~---~~v~~~~g~ 78 (189)
T 2ea3_A 16 RCSIGFAVN---G--GFITAGHCG-RTGAT--TANPT------GTFAGSSFPGNDYAFVRTGAGVNLL---AQVNNYSGG 78 (189)
T ss_dssp EEECCEEET---T--EEEECGGGC-CTTCE--EETTT------EEEEEEECSBSCEEEEEECTTCEEE---EEEECSSSC
T ss_pred CCccCEEcc---C--eEEEchhcC-CCCCE--EEeCC------cEEEeeCCCCCCEEEEEECCCCccc---cceEecCCc
Confidence 456899998 2 999996654 55444 44442 8899999 99999999998653211 1222
Q ss_pred ccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCcccc-ccceEEEEecccCC-CCCceEEcCCe
Q 001280 723 AAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRA-MNMEVIELDTDFGS-TFSGVLTDEHG 800 (1108)
Q Consensus 723 ~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~-~~~~~I~~d~~ig~-~sGGpL~d~~G 800 (1108)
++++..+..++.|+.|..+|++.++. .+.|+.+... + .|.. ....+++++..+++ +|||||++ +|
T Consensus 79 ~v~l~~s~~~~vG~~v~~~G~~tG~t----~G~Vs~~~~~--v------~~~~~~~~~~~~~~~~~~~GDSGgpl~~-~~ 145 (189)
T 2ea3_A 79 RVQVAGHTAAPVGSAVCRSGSTTGWH----CGTITALNSS--V------TYPEGTVRGLIRTTVCAEPGDSGGSLLA-GN 145 (189)
T ss_dssp EEECCBCCCCCTTCEEEEEETTTEEE----EEEEEEEEEE--E------EETTEEEEEEEEESCCCCTTCTTCEEEE-TT
T ss_pred eeecCCCcCCCCCCEEEEEEeCCccE----EEEEEecceE--E------EeCCccCcceEEeeeeccCCCccCeEEE-CC
Confidence 34566555689999999999997642 3445421100 0 1110 11247888877744 79999996 79
Q ss_pred eEEEEEeeccccccccCCCCCcceeEecccHHHHHHHH
Q 001280 801 RVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 838 (1108)
Q Consensus 801 ~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl 838 (1108)
+++||++..... ....... |++|++.++..+
T Consensus 146 ~~vGi~s~~~~~-----c~~~~~~--~~~pi~~~l~~~ 176 (189)
T 2ea3_A 146 QAQGVTSGGSGN-----CRTGGTT--FFQPVNPILQAY 176 (189)
T ss_dssp EEEEEEEEEEEE-----TTTEEEE--EEEEHHHHHHHH
T ss_pred EEEEEEeecCCC-----CCCCCcE--EEEEHHHHHHHC
Confidence 999998763221 1122334 669988877654
No 84
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.92 E-value=3.2e-09 Score=97.47 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=64.3
Q ss_pred CCCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEE-ccccc
Q 001280 295 GETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNL-VQDLH 367 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~v-~~~~~ 367 (1108)
...|++| ..|.++|||++||++||+|++|||+++.++.++..++.. .+|+.+.|+|.|+|+.+++++ +...+
T Consensus 3 ~~~Gv~V-~~V~~~spA~~GL~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~ 76 (94)
T 2kl1_A 3 EAKGVYV-MSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKPFP 76 (94)
T ss_dssp CCCCEEC-CCCCTTSTTBTTBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCCBCS
T ss_pred CCCcEEE-EEECCCChHHhCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEeeCC
Confidence 4578777 699999999999999999999999999999999988865 489999999999999999999 76654
No 85
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.92 E-value=5.5e-09 Score=97.04 Aligned_cols=69 Identities=23% Similarity=0.309 Sum_probs=63.7
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEeC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQD 1077 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~d 1077 (1108)
.|++|..+.++|||++ ||++||.|++|||+++.++++|...+...+.++.+.|+ +.|+|+.+.+++++.
T Consensus 7 ~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~-v~R~g~~~~~~v~~~ 75 (100)
T 3i18_A 7 DGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKIN-YKHGDKNEQADIKLT 75 (100)
T ss_dssp CCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEE-EEETTEEEEEEEECE
T ss_pred CCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEE-EEECCEEEEEEEEEe
Confidence 4899999999999996 99999999999999999999999999987679999999 789999988887763
No 86
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.91 E-value=4.6e-09 Score=97.57 Aligned_cols=71 Identities=17% Similarity=0.312 Sum_probs=64.0
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEE-ccccc
Q 001280 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNL-VQDLH 367 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~v-~~~~~ 367 (1108)
..|++| ..|.++|||++||++||+|++|||++|.+|.++..++.. ..|+.+.|+|.|+|+..++++ +..++
T Consensus 6 ~~Gv~V-~~V~~~spA~~GL~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~ 78 (100)
T 3i18_A 6 YDGVYV-MSVKDDVPAADVLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAID 78 (100)
T ss_dssp CCCEEE-EEECTTSGGGGTCCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEECS
T ss_pred CCCEEE-EEeCCCCchHHCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecCC
Confidence 578887 699999999999999999999999999999999998865 578999999999999999998 76654
No 87
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.91 E-value=2.9e-09 Score=97.89 Aligned_cols=86 Identities=13% Similarity=0.075 Sum_probs=70.0
Q ss_pred EEEeecCCCHHhHh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCC--EEEEEEEeecccC-CCC
Q 001280 902 RVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQG--REIELQVGTDVRD-GNG 977 (1108)
Q Consensus 902 ~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g--~~~~v~v~~~~~~-~~~ 977 (1108)
+|..|.++|||+++ |++||+|++|||++|.+|.++...+.....+ +.+.++|.|+| +.+++++++..+. +..
T Consensus 5 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~d~~~~l~~~~~~----~~v~l~v~R~g~~~~~~~~l~l~~~~~~~~ 80 (95)
T 3id1_A 5 VVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGD----ESTTITVAPFGSDQRRDVKLDLRHWAFEPD 80 (95)
T ss_dssp BEEEECTTSHHHHTTCCTTCEEEEETTEECSSHHHHHHHHHHTTTC----SEEEEEEECTTCCCCEEEEEECTTCCCCTT
T ss_pred EEEeeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHHhcCC----CcEEEEEEECCCCceEEEEEEccccccCCC
Confidence 48899999999999 9999999999999999999999988655443 68999999987 5788899988875 334
Q ss_pred CcceeeeccccccC
Q 001280 978 TTRVINWCGCIVQD 991 (1108)
Q Consensus 978 t~~~~~~~G~~~~~ 991 (1108)
...++..+|+.+..
T Consensus 81 ~~~~l~~lGl~p~~ 94 (95)
T 3id1_A 81 KEDPVSSLGIRPRG 94 (95)
T ss_dssp TSCHHHHTTEEECC
T ss_pred CCCHHHHcCccCCC
Confidence 45556667776543
No 88
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.91 E-value=2.7e-09 Score=96.45 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=61.6
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1075 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk 1075 (1108)
|+.|..+.++|||+++||++||.|++|||+++.++++|.++++..+.++.++|+ +.|+|+.+.++++
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~-v~R~g~~~~~~v~ 86 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLT-VERDGQQHDVYIQ 86 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEE-EEETTEEEEEEEE
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEE-EEECCEEEEEEEE
Confidence 788999999999999999999999999999999999999999987678999999 7999998887765
No 89
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.91 E-value=8e-10 Score=100.77 Aligned_cols=69 Identities=26% Similarity=0.389 Sum_probs=61.8
Q ss_pred ceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHHhcC-CCCeEEEEEEECCEEEEEEE-ccccc
Q 001280 298 GLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTVNL-VQDLH 367 (1108)
Q Consensus 298 G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~v-~~~~~ 367 (1108)
|++| ..|.++|||++||++||+|++|||+++.++.++..++... +|++++|+|.|+|+.+++++ +...+
T Consensus 2 Gv~V-~~V~~~spA~~GL~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~ 72 (91)
T 2kjp_A 2 GIYA-SSVVENMPAKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFP 72 (91)
T ss_dssp CSSC-CCCCCSSCCSSCCCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCCT
T ss_pred ceEE-EEECCCChHHHcCCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEeccC
Confidence 5666 6999999999999999999999999999999999998664 79999999999999998888 76654
No 90
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}
Probab=98.90 E-value=4.5e-09 Score=108.92 Aligned_cols=157 Identities=10% Similarity=0.050 Sum_probs=98.4
Q ss_pred eEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee-----c
Q 001280 650 FGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR-----A 723 (1108)
Q Consensus 650 ~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~-----~ 723 (1108)
--+||++.+ ...+|||||.|+ ..+...+.+ ..|++++.| |..|+||||+++..... ..|. +
T Consensus 16 CT~Gf~v~~-~~~~~ilTa~Hc-~~~g~~v~~--------~~g~v~~~~~~~~D~Alikl~~~~~~~---~~v~~~~g~~ 82 (186)
T 2pfe_A 16 CSIGFSVRQ-GSQTGFATAGHC-GSTGTRVSS--------PSGTVAGSYFPGRDMGWVRITSADTVT---PLVNRYNGGT 82 (186)
T ss_dssp EECCEEEEE-TTEEEEEECGGG-CCTTCEEBT--------TTEEEEEEECSBSCEEEEEECTTSEEE---EEEECSSSCE
T ss_pred EEeeEEEEc-CCeeEEEEChhh-CCCCCEEEE--------eeEEEEecCCCCCCEEEEEeCCCcccc---cceeccCCce
Confidence 458999973 246899999554 455554443 568889998 99999999998653211 1222 2
Q ss_pred cccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccceEEEEecccCC-CCCceEEcCCeeE
Q 001280 724 AELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRV 802 (1108)
Q Consensus 724 ~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~V 802 (1108)
+++..+..++.|++|..+|++.+.. .+.|+.+......+. ..| ..+++.+...++ .|||||+. +|++
T Consensus 83 ~~i~~~~~~~vG~~vc~~G~~tG~t----~G~vs~~~~tv~~~~---~~~----~~~~~~~~c~~~GDSGgpl~~-~~~~ 150 (186)
T 2pfe_A 83 VTVTGSQEAATGSSVCRSGATTGWR----CGTIQSKNQTVRYAE---GTV----TGLTRTTACAEGGDSGGPWLT-GSQA 150 (186)
T ss_dssp EECCBCCCCCTTCEEEEEETTTEEE----EEEEEEEEEEEEETT---EEE----EEEEEESCCCCTTCTTCEEEE-TTEE
T ss_pred EecCCCCCCCCCCeEEEEEeCCceE----EEEEEEEeeeEEeCC---ceE----eceEeccEEecCCCccCeEEE-CCEE
Confidence 3455555689999999999997742 344542211100010 011 246777766643 79999995 7899
Q ss_pred EEEEeeccccccccCCCCCcceeEecccHHHHHHHH
Q 001280 803 QAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 838 (1108)
Q Consensus 803 vGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl 838 (1108)
+||++..... ....... |++|++.++..+
T Consensus 151 vGi~s~g~~~-----c~~~~~~--~~~pi~~~l~~~ 179 (186)
T 2pfe_A 151 QGVTSGGTGD-----CRSGGIT--FFQPINPLLSYF 179 (186)
T ss_dssp EEEEEEEEEE-----TTTEEEE--EEEEHHHHHHHH
T ss_pred EEEEeecCCC-----CCCCCcE--EEEEHHHHHHHC
Confidence 9998764321 1122234 569988877644
No 91
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.87 E-value=4.5e-09 Score=96.65 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=65.6
Q ss_pred EEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcC-CCCeEEEEEEECC--EEEEEEE-ccccccc-CCCccc
Q 001280 302 VDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGG--ISMTVNL-VQDLHSI-TPDYFL 375 (1108)
Q Consensus 302 v~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g--~~~~~~v-~~~~~~~-~~~~~~ 375 (1108)
|..|.++|||++ ||++||+|++|||+.|.+|.++...+... .++.+.++|.|+| ..+++++ +..|+.. ....++
T Consensus 6 V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~~~~~~~~~~l 85 (95)
T 3id1_A 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPV 85 (95)
T ss_dssp EEEECTTSHHHHTTCCTTCEEEEETTEECSSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTCCCCTTTSCHH
T ss_pred EEeeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEccccccCCCCCCHH
Confidence 469999999999 99999999999999999999999888654 4479999999987 5678888 8888632 334566
Q ss_pred ccCCeE
Q 001280 376 EVSGAV 381 (1108)
Q Consensus 376 ~~~G~~ 381 (1108)
...|+.
T Consensus 86 ~~lGl~ 91 (95)
T 3id1_A 86 SSLGIR 91 (95)
T ss_dssp HHTTEE
T ss_pred HHcCcc
Confidence 666754
No 92
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...
Probab=98.86 E-value=2.1e-08 Score=104.02 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=99.8
Q ss_pred eEE-EEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCcccccceeccccC
Q 001280 650 FGT-GVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVRAAELL 727 (1108)
Q Consensus 650 ~Gs-G~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~~~~l~ 727 (1108)
.|| ||++.. +..++|||++|+ ..+...+.+...+ .. ..++++..+ +.+|+||||++...+.. ...+.++.+.
T Consensus 13 ~ct~Gf~v~~-~~~~~ilTaaHc-v~~~~~~~v~~~~-~~-~~g~~~~~~~~~~DiAll~l~~~~~~~--~~~v~~~~l~ 86 (185)
T 2qa9_E 13 RCSLGFNVRS-GSTYYFLTAGHC-TDGATTWWANSAR-TT-VLGTTSGSSFPNNDYGIVRYTNTTIPK--DGTVGGQDIT 86 (185)
T ss_dssp EEECCEEEEE-TTEEEEEECHHH-HTTCSEEESSTTS-CS-EEEEEEEEECSBSCEEEEEECCSSSCC--CCEETTEECC
T ss_pred cEeccEEEEE-CCceEEEECccc-CCCCCcEEecCCC-ce-EeEEEeccccCCCCEEEEEecCCCccc--cCccceeeeC
Confidence 455 999974 357899999555 5556666665443 33 346777778 99999999997633321 1234445564
Q ss_pred CCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccceEEEEeccc-CCCCCceEEcCCeeEEEEE
Q 001280 728 PEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF-GSTFSGVLTDEHGRVQAIW 806 (1108)
Q Consensus 728 ~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~i-g~~sGGpL~d~~G~VvGi~ 806 (1108)
....+..|+.++++|++.+. ..+.++.+... +.......| ...++.+... ...|||||++.+ +++||.
T Consensus 87 ~~~~~~~g~~v~~~Gw~~~~----~~g~l~~~~~~--v~~~~~~~~----~~~~~~~~cac~GDSGGPlv~~~-~~vGI~ 155 (185)
T 2qa9_E 87 SAANATVGMAVTRRGSTTGT----HSGSVTALNAT--VNYGGGDVV----YGMIRTNVCAEPGDSGGPLYSGT-RAIGLT 155 (185)
T ss_dssp EECCCCTTCEEEEEETTTEE----EEEEEEEEEEE--EECSTTCEE----EEEEEESCCCCTTCTTCEEEETT-EEEEEE
T ss_pred CcccCCCCCEEEEecCCCce----eEeEEEEEEEE--EEcCCCCEE----eceEEecccCCCCCccceEEECC-EEEEEE
Confidence 33347899999999997542 23344422111 111111111 1355665544 236999999975 999998
Q ss_pred eeccccccccCCCCCcceeEecccHHHHHHHHH
Q 001280 807 GSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLD 839 (1108)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~ 839 (1108)
+...+. ......+ +..|++.++.+++
T Consensus 156 s~g~~~-----~~~~~p~--vyt~v~~~~~wI~ 181 (185)
T 2qa9_E 156 SGGSGN-----CSSGGTT--FFQPVTEALSAYG 181 (185)
T ss_dssp EEEEEE-----TTTEEEE--EEEEHHHHHHHHT
T ss_pred EecCCC-----CCCCCcE--EEEEHHHHHHhhC
Confidence 763221 1111223 5589888887663
No 93
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=98.85 E-value=7.4e-09 Score=102.21 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=69.3
Q ss_pred ccCCCccCeEEEE-cChhHH-HhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--C
Q 001280 257 SIPRGTLQVTFVH-KGFDET-RRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--Q 331 (1108)
Q Consensus 257 ~v~rg~lg~~~~~-~~~~~~-r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~ 331 (1108)
.+.|++||+.+.. ...+.+ +.+++. +...|++| ..|.++|||++ ||++||+|++|||+.+. +
T Consensus 34 ~~~~~~lG~~i~~g~~~~~~~~~~~~~------------~~~~gv~V-~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~ 100 (139)
T 2vz5_A 34 QGENLILGFSIGGGIDQDPSQNPFSED------------KTDKGIYV-TRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVT 100 (139)
T ss_dssp ETTEEECSEEEEECTTSCGGGCSSCSS------------TTCCCEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCC
T ss_pred CCCcccccEEEEccccCChhhhhhccc------------CCCCCEEE-EEECCCCHHHHCCCCCCCEEEEECCEEcCCCC
Confidence 4567899999874 222211 223332 14578887 69999999999 99999999999999999 5
Q ss_pred hhHHHHHHhcCCCCeEEEEEEECCEEEEEEE-ccc
Q 001280 332 FLKLETLLDDGVDKNIELLIERGGISMTVNL-VQD 365 (1108)
Q Consensus 332 ~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~v-~~~ 365 (1108)
+.++..++....|+.+.|+|.|+|+..++.+ +..
T Consensus 101 ~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~~~~ 135 (139)
T 2vz5_A 101 HDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS 135 (139)
T ss_dssp HHHHHHHHCCTTCSEEEEEEEECC-------CCCC
T ss_pred HHHHHHHHHhCCCCEEEEEEEECCEEEEEEEeece
Confidence 8889888877788999999999999887776 433
No 94
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.84 E-value=9.9e-10 Score=100.17 Aligned_cols=68 Identities=18% Similarity=0.315 Sum_probs=63.2
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQD 1077 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~d 1077 (1108)
|++|..|.++|||++ ||++||.|++|||+++.++++|..+++..+.|+.++|+ +.|+|+.+.+++++.
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~-v~R~g~~~~~~v~~~ 69 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLK-IEREEKEKRVTLTLK 69 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEE-EESSSCEECCCEECC
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEEE-EEECCEEEEEEEEEe
Confidence 678999999999999 99999999999999999999999999987679999999 899999988888874
No 95
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.83 E-value=5.6e-09 Score=95.80 Aligned_cols=69 Identities=28% Similarity=0.295 Sum_probs=64.3
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEeC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQD 1077 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~d 1077 (1108)
.|++|.++.++|||++ ||++||.|++|||+++.++++|.++++..+.|+.++|+ +.|+|+.+.+++++.
T Consensus 5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~-v~R~g~~~~~~v~~~ 73 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVT-FIRDRKQHEAELVLK 73 (94)
T ss_dssp CCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEE-EEETTEEEEEEECCC
T ss_pred CcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEE-EEECCEEEEEEEEEe
Confidence 4899999999999999 99999999999999999999999999987679999999 799999998888774
No 96
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.83 E-value=1.7e-08 Score=94.53 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCCCCcccccCcccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCC
Q 001280 831 IYTISRVLDKIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGS 910 (1108)
Q Consensus 831 i~~i~~vl~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~s 910 (1108)
.+.+.++.++|.+.+. ..+. ++|+...... ....++.|..+.++|
T Consensus 4 ~~~~~~~~~~l~~~~~--------~~~~-----~~g~~~~~~~----------------------~~~~G~~V~~~~pas 48 (105)
T 2i4s_A 4 EDKVDAIREAIARNPQ--------EIFQ-----YVRLSQVKRD----------------------DKVLGYRVSPGKDPV 48 (105)
T ss_dssp HHHHHHHHHHHHHSGG--------GHHH-----HEEEEEEEET----------------------TEEEEEEEEECSCTH
T ss_pred hHHHHHHHHHHHHCHH--------HHHh-----hceeEEEecC----------------------CcEEEEEEecCCCCC
Confidence 4578888888888754 3333 6776543211 112467788888888
Q ss_pred HHhHh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEee
Q 001280 911 KAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGT 970 (1108)
Q Consensus 911 ~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~ 970 (1108)
+|+++ |++||+|++|||++|.+|.++..++.....+ +.+.++|.|+|+.+++.+++
T Consensus 49 ~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g----~~v~l~v~R~g~~~~~~v~l 105 (105)
T 2i4s_A 49 LFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEM----TEMSLTVERDGQQHDVYIQF 105 (105)
T ss_dssp HHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTC----SEEEEEEEETTEEEEEEEEC
T ss_pred HHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCC----CeEEEEEEECCEEEEEEEeC
Confidence 99999 9999999999999999999999888666665 78999999999988887764
No 97
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.81 E-value=1.3e-08 Score=91.96 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=60.0
Q ss_pred ceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEee
Q 001280 899 QVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGT 970 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~ 970 (1108)
.++.|..+.++|||+++ |++||+|++|||++|.+|.++..++.....+ +.+.++|.|+|+.+++.+++
T Consensus 19 ~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g----~~v~l~v~R~g~~~~~~v~l 87 (87)
T 2i6v_A 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEM----TEMSLTVERDGQQHDVYIQF 87 (87)
T ss_dssp EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGC----SEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEC
Confidence 57778888889999999 9999999999999999999999888666665 78999999999988887754
No 98
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.79 E-value=1.2e-08 Score=95.70 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=61.1
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1075 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk 1075 (1108)
|++|....++|||+++||++||.|++|||+++.++++|.++++....++.++|+ +.|+|+.+.++++
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~-v~R~g~~~~~~v~ 104 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLT-VERDGQQHDVYIQ 104 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEE-EEETTEEEEEEEE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEE-EEECCEEEEEEEe
Confidence 677888888899999999999999999999999999999999986678999999 7999998888775
No 99
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3
Probab=98.73 E-value=2.8e-08 Score=99.36 Aligned_cols=114 Identities=10% Similarity=0.015 Sum_probs=80.9
Q ss_pred ceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEeeCCCcEEEEEE---CCC-CCCccccccee
Q 001280 647 QHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAY---DPS-SLGVAGASVVR 722 (1108)
Q Consensus 647 ~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~dp~~dlAilk~---d~~-~l~~~~~~~v~ 722 (1108)
....|+||+|+ ..++|||+ +||..+.....|+. + +..++ +.+++..|||++++ +.. .+|.
T Consensus 13 ~~G~GsgF~i~---~~g~vVTA-~HVv~~~~~~~V~~-~-G~~~~---Vgf~~~~DlA~l~v~~~~~~g~~P~------- 76 (198)
T 1mbm_A 13 SYGTGSVWTRN---NEVVVLTA-SHVVGRANMATLKI-G-DAMLT---LTFKKNGDFAEAVTTQSELPGNWPQ------- 76 (198)
T ss_dssp SEEEEEEEEET---TEEEEEEE-HHHHCTTCEEEEEE-T-TEEEE---EECEEETTEEEEEECTTTSCSCCCB-------
T ss_pred cCCccceEEEC---CCeEEEEe-eeEEccCceEEEEE-C-CEEEE---eecccCCcEEEEEeeccCCCCCCcc-------
Confidence 44789999999 79999999 55676777788888 6 89888 77889999999999 432 3343
Q ss_pred ccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccceEEEEecccCCCCCceEEcCCeeE
Q 001280 723 AAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGSTFSGVLTDEHGRV 802 (1108)
Q Consensus 723 ~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~~sGGpL~d~~G~V 802 (1108)
++|++ +++|+.-+. .+.+.++ ... .+ ..+++++ .-| +||||++|.+ +|
T Consensus 77 -l~las---p~vG~a~~~----------~~tG~~~----~l~-----g~------~g~l~~t-~PG-DSGsPVl~~~-~v 124 (198)
T 1mbm_A 77 -LHFAQ---PTTGPASWC----------TATGDEE----GLL-----SG------EVCLAWT-TSG-DSGSAVVQGD-AV 124 (198)
T ss_dssp -CCBCC---CCSEEEEEE----------ETTEEEE----EEE-----CS------SCEECCC-CGG-GTTCEEEETT-EE
T ss_pred -cccCC---CcccceEEe----------eccccEE----EEe-----cC------CceeEcC-CCC-CCCCccccCC-eE
Confidence 77754 488882222 2233333 111 11 1456666 223 5899999999 99
Q ss_pred EEEEee
Q 001280 803 QAIWGS 808 (1108)
Q Consensus 803 vGi~~~ 808 (1108)
|||++.
T Consensus 125 IGV~T~ 130 (198)
T 1mbm_A 125 VGVHTG 130 (198)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999987
No 100
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=98.72 E-value=4e-08 Score=96.90 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=56.9
Q ss_pred CCeEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEe
Q 001280 1006 GHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1076 (1108)
Q Consensus 1006 ~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~ 1076 (1108)
..|++|..|.++|||+++||++||.|++|||+++. +++++.+.++. ..|+.++|. +.|+|+...+.++.
T Consensus 63 ~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~g~~v~l~-v~R~g~~~~v~~~~ 133 (139)
T 2vz5_A 63 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTK-RSEEVVRLL-VTRQSLQKAVQQSM 133 (139)
T ss_dssp CCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCC-TTCSEEEEE-EEECC-------CC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCEEEEE-EEECCEEEEEEEee
Confidence 35999999999999999999999999999999999 58999999998 568999999 89999887776654
No 101
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.70 E-value=3e-08 Score=92.42 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=60.0
Q ss_pred cCCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hh
Q 001280 258 IPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FL 333 (1108)
Q Consensus 258 v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~ 333 (1108)
..+++||+.+.......++.++++ ...|++| ..|.++|||++ | |++||+|++|||+.+.+ +.
T Consensus 13 ~~~~~lG~~~~~~~~~~~~~~~~~-------------~~~g~~V-~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~ 78 (103)
T 2fcf_A 13 EPSKSLGISIVGGRGMGSRLSNGE-------------VMRGIFI-KHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHE 78 (103)
T ss_dssp CC-CCCCEEEECCCC--------------------------EEE-EEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred CCCCceeEEEEccCCCCcccccCC-------------CCCCEEE-EEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 356889999886554444444443 4467777 79999999999 9 99999999999999998 88
Q ss_pred HHHHHHhcCCCCeEEEEEEECCE
Q 001280 334 KLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 334 ~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
++..++... ++.+.|+|.|.++
T Consensus 79 ~~~~~l~~~-~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 79 QAVEAIRKA-GNPVVFMVQSIIS 100 (103)
T ss_dssp HHHHHHHTC-CSSEEEEEECCCC
T ss_pred HHHHHHHhC-CCcEEEEEEECCC
Confidence 998888665 4589999999654
No 102
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.70 E-value=2.6e-08 Score=90.59 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=60.7
Q ss_pred EEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEe
Q 001280 1009 VYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1076 (1108)
Q Consensus 1009 V~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~ 1076 (1108)
++|..+.++|||+++||++||.|++|||+++.++++|...++.. .++.+.|+ +.|+|+.+.+++++
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~-~g~~v~l~-v~R~g~~~~~~v~~ 71 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDN-PGXSLALE-IERQGSPLSLTLIP 71 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCHHHHHHHHHHC-TTCCEEEE-EEETTEEEEEEECC
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeEcCCHHHHHHHHhcC-CCCeEEEE-EEECCeEEEEEEEE
Confidence 46889999999999999999999999999999999999999986 58899999 79999998888875
No 103
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.70 E-value=1.8e-08 Score=91.79 Aligned_cols=80 Identities=18% Similarity=0.361 Sum_probs=57.5
Q ss_pred EEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCC
Q 001280 268 VHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGV 343 (1108)
Q Consensus 268 ~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~ 343 (1108)
.....+.++.||++ -..|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++...
T Consensus 7 ~~~~~~~~~~~g~~-------------~~~gv~V-~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~- 71 (92)
T 3cyy_A 7 TLVKSAKNEEYGLR-------------LASHIFV-KEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS- 71 (92)
T ss_dssp EEECSSTTSCCCEE-------------EEEEEEE-EEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-
T ss_pred EEEeCCCCCCCCEE-------------EeCCEEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence 33445556667776 2257666 79999999999 9 9999999999999999 999998888654
Q ss_pred CCeEEEEEEECCEEEEEEE
Q 001280 344 DKNIELLIERGGISMTVNL 362 (1108)
Q Consensus 344 g~~v~l~V~R~g~~~~~~v 362 (1108)
++.+.++|.|+|+..++.+
T Consensus 72 ~~~v~l~v~r~g~~~~~~v 90 (92)
T 3cyy_A 72 KGKLKMVVQRDERATLLNV 90 (92)
T ss_dssp TTEEEEEEEC---------
T ss_pred CCcEEEEEEeCCceeeeeC
Confidence 4589999999998765543
No 104
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.69 E-value=2.2e-08 Score=90.93 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=52.5
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEe--CChhHHHHHHhc-CCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVI--TQFLKLETLLDD-GVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v--~~~~~l~~~l~~-~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++ .++.++..++.. ..|+.+.|+|.|+|+
T Consensus 27 ~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 90 (90)
T 2eaq_A 27 IPGIFV-ASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYGK 90 (90)
T ss_dssp TTEEEE-EEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC-
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 357776 69999999999 9999999999999999 899999988864 568899999999874
No 105
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.68 E-value=2.2e-08 Score=88.78 Aligned_cols=77 Identities=17% Similarity=0.340 Sum_probs=60.8
Q ss_pred CeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHH
Q 001280 264 QVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLL 339 (1108)
Q Consensus 264 g~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l 339 (1108)
|+.+..++.+..+.||++ -..|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++
T Consensus 1 G~~~~~~~~~~~~~~g~~-------------~~~gv~V-~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l 66 (81)
T 2rcz_A 1 GSKVTLVKSRKNEEYGLR-------------LASHIFV-KEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 66 (81)
T ss_dssp CEEEEEECCSTTCCCCEE-------------EEEEEEE-EEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CeEEEEEECCCCCCCCEE-------------EeCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 455666666677778876 2256666 79999999999 9 9999999999999999 999998888
Q ss_pred hcCCCCeEEEEEEECC
Q 001280 340 DDGVDKNIELLIERGG 355 (1108)
Q Consensus 340 ~~~~g~~v~l~V~R~g 355 (1108)
.... +.+.++|.|+|
T Consensus 67 ~~~~-~~v~l~v~R~g 81 (81)
T 2rcz_A 67 ERSK-GKLKMVVQRDE 81 (81)
T ss_dssp HTST-TEEEEEEEC--
T ss_pred HCCC-CeEEEEEEeCC
Confidence 6543 48999999875
No 106
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.68 E-value=2e-08 Score=91.21 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=54.4
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
|++|..|.++|||+++||++||.|++|||+++ .++++|.++++..+.++.+.|. +.|+|+
T Consensus 29 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g~ 90 (90)
T 2eaq_A 29 GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMD-VRRYGK 90 (90)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEE-EEEEC-
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEE-EEeCCC
Confidence 89999999999999999999999999999999 8999999999875458889998 778764
No 107
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.68 E-value=2.7e-08 Score=90.47 Aligned_cols=64 Identities=30% Similarity=0.541 Sum_probs=58.1
Q ss_pred EEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEEEEEECCEEEEEEE-ccc
Q 001280 302 VDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGISMTVNL-VQD 365 (1108)
Q Consensus 302 v~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~v-~~~ 365 (1108)
|..|.++|||++ ||++||+|++|||+++.+|.++...+....|+.+.++|.|+|+.+++.+ +..
T Consensus 8 V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~~~ 73 (91)
T 2zpm_A 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPLSLTLIPES 73 (91)
T ss_dssp CSEECTTSHHHHTTCCTTCEEEEETTEECCCHHHHHHHHHHCTTCCEEEEEEETTEEEEEEECCEE
T ss_pred EEEECCCChHHhcCCCCCCEEEEECCeEcCCHHHHHHHHhcCCCCeEEEEEEECCeEEEEEEEEee
Confidence 479999999999 9999999999999999999999988876688999999999999988888 543
No 108
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=98.65 E-value=8e-08 Score=90.99 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=62.1
Q ss_pred eEEEEEecCCChhhhcCC-CCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYGL-YALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQD 1077 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL-~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~d 1077 (1108)
+++|..+.++|||+++|| ++||.|++|||+++.+ ++++.+.++.. .++.+.|. +.|+|+.+.+++++.
T Consensus 27 ~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~g~~v~l~-v~R~g~~~~~~~~~~ 97 (112)
T 1qau_A 27 PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI-ASETHVVL-ILRGPEGFTTHLETT 97 (112)
T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHS-CSSSEEEE-EEECCTTSEEEEEEE
T ss_pred CEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCCcEEEE-EEeCCcccceEeeee
Confidence 789999999999999998 9999999999999999 99999999985 48899999 789998888777763
No 109
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.64 E-value=6.3e-08 Score=88.15 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=51.1
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1075 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk 1075 (1108)
|++|.++.++|||+++| |++||.|++|||+++. +++++.+.++.. +..+.|. +.|+|+.+.+++.
T Consensus 24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~g~~~~~~v~ 91 (92)
T 3cyy_A 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS--KGKLKMV-VQRDERATLLNVP 91 (92)
T ss_dssp EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT--TTEEEEE-EEC----------
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCcEEEE-EEeCCceeeeeCC
Confidence 88999999999999999 9999999999999999 999999999974 3488998 7899988777664
No 110
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Probab=98.64 E-value=1.8e-07 Score=99.15 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=94.2
Q ss_pred ccEEEEEEEeCCCcEEEEcccccCCC-CeEE----EEEec------CCeEEeEEEEEEcC--------CCceEEEEECCC
Q 001280 67 ASYATGFVVDKRRGIILTNRHVVKPG-PVVA----EAMFV------NREEIPVYPIYRDP--------VHDFGFFRYDPS 127 (1108)
Q Consensus 67 ~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~----~v~~~------d~~~~~a~vv~~d~--------~~DlAlLk~d~~ 127 (1108)
...|+|++|+++ +|||+|||+... .... .+.+. .+..+.++-+..|| .+|+||||++..
T Consensus 29 ~~~CgGtLIs~~--~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~ 106 (215)
T 1p3c_A 29 GSSCTGTLIAPN--KILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTN 106 (215)
T ss_dssp SCEEEEEEEETT--EEEECHHHHEETTTTEECCCCEEEETCBTTBCTTCCEEEEEEECCHHHHHHCCGGGCCEEEEESSC
T ss_pred CceEEEEEEeCC--EEEECccEeccCCCCccccceEEEEcccCCCCCCCeEEEEEEEeCCccccCCCcccCEEEEEECCC
Confidence 467999999964 999999999642 2233 45443 12345666666654 359999999863
Q ss_pred CcccccccCCCCCCcccCCCCEEEEEecCCCCC-------CeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCC
Q 001280 128 AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-------VSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGG 200 (1108)
Q Consensus 128 ~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~-------~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G 200 (1108)
+.. .+.++.|.......|+.+.++|++.... .......++..... .......+-.|
T Consensus 107 -~~~-~v~pi~l~~~~~~~g~~~~~~Gwg~~~~~~~~~~l~~~~~~~~~~~~c~---------------~~~~~~~~C~G 169 (215)
T 1p3c_A 107 -IGN-TVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTN---------------LAYYTIDTFSG 169 (215)
T ss_dssp -HHH-HHCCCCBCCCSCCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEECSS---------------EEEECCCCCTT
T ss_pred -Ccc-cceeeecCCCcccCCCeEEEecCCCCCcccccceechhccCccCcccch---------------heeeccccCCC
Confidence 221 2455555555567899999999973211 11112121111110 01124567789
Q ss_pred CCCCceecccCcEEEEeecccCC-CCcccccChHHHHHHHHH
Q 001280 201 SSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 201 ~SGgPv~n~~G~vVGi~~~~~~~-~~~~falPi~~i~~~l~~ 241 (1108)
+|||||+..+|.++||.+.+..- ...+.+..+...+..+++
T Consensus 170 DSGgPl~~~~g~lvGi~S~g~~c~~~p~v~t~v~~~~~WI~~ 211 (215)
T 1p3c_A 170 NSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINY 211 (215)
T ss_dssp CTTCEEECTTSCEEEECCEEEGGGTEEEEEBCCHHHHHHHHH
T ss_pred CCCCeeEccCCeEEEEEecccCCCccCceeEechHHHHHHHH
Confidence 99999998889999999765421 122333445555555544
No 111
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.63 E-value=2.3e-08 Score=97.18 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCCCeEEEEEEECCEEEEEEE-cccccccCCCcccccCCeEEccCCHHHhhccCcCCCeEEEE--CCCChhHHcCCCCCC
Q 001280 342 GVDKNIELLIERGGISMTVNL-VQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAGVPRHA 418 (1108)
Q Consensus 342 ~~g~~v~l~V~R~g~~~~~~v-~~~~~~~~~~~~~~~~G~~~~~l~~q~~~~~~~~~~gv~v~--~~~~~a~~aGl~~Gd 418 (1108)
.+|++++++|.|+|+.+++++ +... ...|+.+... ..+. .|++|. .++++|++|||++||
T Consensus 6 ~~g~~v~l~v~R~g~~~~v~v~~~~~---------~~lG~~~~~~-----~~~~---~gv~V~~V~~~spA~~aGL~~GD 68 (128)
T 1uf1_A 6 SGDRRSTLHLLQGGDEKKVNLVLGDG---------RSLGLTIRGG-----AEYG---LGIYITGVDPGSEAEGSGLKVGD 68 (128)
T ss_dssp STTTSCCSCCCCCSSEEEEEEECCSS---------CCCCEEEECC-----TTTT---CCCEEEEECTTCHHHHHTCCTTC
T ss_pred CCCCEEEEEEEeCCcEEEEEEEECCC---------CccCEEEECc-----ccCC---CCEEEEEECCCCHHHHCCCCCCC
Confidence 578889999999999999888 6432 2346666542 1122 367887 589999999999999
Q ss_pred EEEEeCCeecCCHHHHHHHHHhcCCCCeEEEEEee
Q 001280 419 IIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSS 453 (1108)
Q Consensus 419 ~I~~Vng~~v~~l~~~~~~i~~~~~~~~v~l~~~~ 453 (1108)
+|++|||+++.++.+ .++++.+..++.+.|++.|
T Consensus 69 ~I~~vng~~v~~~~~-~~~~~~~~~~~~v~l~v~R 102 (128)
T 1uf1_A 69 QILEVNGRSFLNILH-DEAVRLLKSSRHLILTVKD 102 (128)
T ss_dssp EEEEETTEECSSCCH-HHHHHHHTTCSEEEEEEEC
T ss_pred EEEEECCEECCCCCH-HHHHHHHhcCCeEEEEEEE
Confidence 999999999999765 5555555445455555444
No 112
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=98.62 E-value=3.5e-08 Score=89.80 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=55.2
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHH--HHHHHHHcCCCCceEEEEEEEeCCeEE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLE--AFVNVTKEIEHGEFVRVRTVHLNGKPR 1070 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~--~f~~~v~~~~~~~~v~l~~v~rdg~~~ 1070 (1108)
+++|..|.++|||+++||++||.|++|||+++.++. ++...++. .++.+.|. +.|+|+..
T Consensus 28 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~g~~~ 89 (91)
T 2pkt_A 28 PLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG--CTDNLTLT-VARSEHES 89 (91)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT--CSSEEEEE-EEEECCCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECCccc
Confidence 789999999999999999999999999999999998 99999997 48999999 78888653
No 113
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.62 E-value=1.4e-08 Score=97.12 Aligned_cols=89 Identities=24% Similarity=0.243 Sum_probs=69.8
Q ss_pred ccCCCcc----CeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC
Q 001280 257 SIPRGTL----QVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ 331 (1108)
Q Consensus 257 ~v~rg~l----g~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~ 331 (1108)
++.|+|+ ++.+...+ ..||+.-. .. ...|++| ..|.+++||++ ||++||+|++|||+++.+
T Consensus 11 ~v~r~~l~~~~~v~l~~~~----~~lG~~~~--------~~-~~~gv~V-~~V~~~spA~~aGL~~GD~Il~vng~~v~~ 76 (117)
T 1uit_A 11 RKDRPYVEEPRHVKVQKGS----EPLGISIV--------SG-EKGGIYV-SKVTVGSIAHQAGLEYGDQLLEFNGINLRS 76 (117)
T ss_dssp CSCCCCSCCCEEEEEECSS----CCCCEEEE--------EC-TTSCEEE-EEECTTSHHHHHTCCTTCEECEETTEETTT
T ss_pred ccccccCCCCEEEEEEeCC----CCccEEEE--------cc-CCCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCC
Confidence 6889999 88877543 34565411 01 2357777 79999999999 999999999999999999
Q ss_pred hhHHHHHH-hcCCCCeEEEEEEECCEEEE
Q 001280 332 FLKLETLL-DDGVDKNIELLIERGGISMT 359 (1108)
Q Consensus 332 ~~~l~~~l-~~~~g~~v~l~V~R~g~~~~ 359 (1108)
+.++...+ ....++.+.|+|.|+++..+
T Consensus 77 ~~~~~~~~~~~~~g~~v~l~v~r~~~~~~ 105 (117)
T 1uit_A 77 ATEQQARLIIGQQCDTITILAQYNPHVHQ 105 (117)
T ss_dssp CCHHHHHHHTTSCCSEEEEEECCCSCCCC
T ss_pred CCHHHHHHHHHcCCCeEEEEEEECCchhh
Confidence 98887766 45778999999999887544
No 114
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=98.62 E-value=1e-07 Score=91.89 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=62.1
Q ss_pred CCCccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhH
Q 001280 259 PRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLK 334 (1108)
Q Consensus 259 ~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~ 334 (1108)
.+++||+.+.......++.+++. ...|++| ..|.++|||++ | |++||+|++|||+++.+ +.+
T Consensus 34 ~~~~lGi~v~~~~~~~~~~~~~~-------------~~~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~ 99 (123)
T 2iwq_A 34 PSKSLGISIVGGRGMGSRLSNGE-------------VMRGIFI-KHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ 99 (123)
T ss_dssp TTSCCSEEEEECC---------C-------------CCCSEEE-EEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCccEEEEeccCccccccccC-------------CCCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 46789999886544444333333 4578777 69999999999 9 99999999999999988 888
Q ss_pred HHHHHhcCCCCeEEEEEEECCE
Q 001280 335 LETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 335 l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
+..++... ++.+.|+|.|...
T Consensus 100 ~~~~l~~~-~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 100 AVEAIRKA-GNPVVFMVQSIIS 120 (123)
T ss_dssp HHHHHHHC-CSSEEEEEECCCC
T ss_pred HHHHHHcC-CCeEEEEEEECCc
Confidence 88888655 5589999998654
No 115
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=98.61 E-value=9.8e-08 Score=86.00 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=53.5
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++..+ +.+.|. +.|+|+
T Consensus 27 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~-v~R~~~ 86 (87)
T 2pa1_A 27 PIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP--SPLRLQ-LDRITS 86 (87)
T ss_dssp EEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC--SSEEEE-EEECCC
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC--CeEEEE-EEecCC
Confidence 7899999999999999999999999999999999 899999999854 789998 788774
No 116
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*
Probab=98.61 E-value=3.3e-07 Score=97.91 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=98.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-CeEEEEEec------CCeEEeEEEEEEcCC--
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFV------NREEIPVYPIYRDPV-- 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~~v~~~------d~~~~~a~vv~~d~~-- 116 (1108)
.|-+|+|... ....++|.+|+++ +|||+|||+... ...+.+.+. ++..+.++-+..||.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~ 79 (224)
T 1pq7_A 12 FPFIVSISRN----------GGPWCGGSLLNAN--TVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYS 79 (224)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECHHHHTTSCGGGEEEEESCSBSSSSSEEECEEEEEECTTCB
T ss_pred cCeEEEEEEC----------CCeEEEEEEecCC--EEEEcHHccCCCCCCceEEEeCcceecCCCEEEEEEEEEECCCCC
Confidence 3667888642 2467999999965 999999999742 234566553 356777787888885
Q ss_pred ---CceEEEEECCCCcccccccCCCCC--CcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCc
Q 001280 117 ---HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGY 183 (1108)
Q Consensus 117 ---~DlAlLk~d~~~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~~~ 183 (1108)
+||||||++..-.....+.++.|. ......|+.+.+.|+..... .......+..+... ...|.....
T Consensus 80 ~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~ 159 (224)
T 1pq7_A 80 GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAI 159 (224)
T ss_dssp TTBTCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTTTS
T ss_pred CCCCCEEEEEeCCCCcCCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHHhhHhhcCCCC
Confidence 599999997542111123444444 45568899999999864321 12222233322210 000110011
Q ss_pred ccccceEEEE-----eeecCCCCCCCceecccCcEEEEeeccc
Q 001280 184 NDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1108)
Q Consensus 184 ~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1108)
.+ .+|-+ ....-.|+|||||+..+|.++||.+.+.
T Consensus 160 ~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~g~l~Gi~S~g~ 199 (224)
T 1pq7_A 160 TN---QMFCAGVSSGGKDSCQGDSGGPIVDSSNTLIGAVSWGN 199 (224)
T ss_dssp CT---TEEEECCTTCCCBCCTTCTTCEEECTTCCEEEEEEECS
T ss_pred CC---CeEEeecCCCCCCCCcCCCCcceECcCCeEEEEEEeCC
Confidence 11 12222 1234579999999987899999998764
No 117
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=98.61 E-value=5.1e-08 Score=88.69 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=51.0
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++||++||.|++|||+++. +++++.+.++.. ++.++|. +.|++..
T Consensus 27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~--g~~v~l~-v~r~~~~ 88 (91)
T 2vsp_A 27 PGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS--GKNVTLL-VCGKKAQ 88 (91)
T ss_dssp SCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS--CSEEEEE-EEC----
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCEEEEE-EEeCCcc
Confidence 3789999999999999999999999999999999 999999999974 8899999 6777654
No 118
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0
Probab=98.60 E-value=9.5e-07 Score=92.55 Aligned_cols=164 Identities=13% Similarity=0.161 Sum_probs=113.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEE----EEEEcCCCceEE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVY----PIYRDPVHDFGF 121 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~----vv~~d~~~DlAl 121 (1108)
..+|+.+.... ......--|+.... ||+||+|........+.+.+..|+..-.. -+..-+..|+.+
T Consensus 15 a~~iC~l~n~s-------dg~~~~l~gigyG~---~iItn~HLf~rnng~L~I~s~hG~f~v~nt~~lki~~i~g~Diii 84 (241)
T 3mmg_A 15 SACVCLLENSS-------DGHSERLFGIGFGP---YIIANQHLFRRNNGELTIKTMHGEFAVANSTQLQMKPVEGRDIIV 84 (241)
T ss_dssp HTTEEEEEEEE-------TTEEEEEEEEEETT---EEEECGGGGSSTTCEEEEEETTEEEEEEEGGGSCEEECTBSSCEE
T ss_pred hheEEEEEEEe-------CCCEEEEEEEeECC---EEEEChhhcccCCCeEEEEECCceEEccCCCceeeEEeCCccEEE
Confidence 45677777643 11223335666654 99999999997767889988877543222 356678899999
Q ss_pred EEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCCCC
Q 001280 122 FRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGS 201 (1108)
Q Consensus 122 Lk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~G~ 201 (1108)
+|. |+++|+.+- .+.-..++.||+|..||..+..+...+ .+|.-....|.. +..+...-.++..|+
T Consensus 85 Irm-PkDfpPf~~---kl~FR~P~~~E~V~lVg~~fq~k~~~s--~vSesS~i~p~~--------~~~fWkHwIsT~~G~ 150 (241)
T 3mmg_A 85 IKM-AKDFPPFPQ---KLKFRQPTIKDRVCMVSTNFQQKSVSS--LVSESSHIVHKE--------DTSFWQHWITTKDGQ 150 (241)
T ss_dssp EEC-CTTSCCCCS---CCCBCCCCTTCCEEEEEEEECSSCEEE--EEEEEECCEECT--------TSSEEEECBCCCTTC
T ss_pred EeC-CCCCCCcch---hcccCCCCCCCeEEEEEeecccCCccE--EECCcceeEEcC--------CCCEEEEEcCCCCCc
Confidence 999 565554221 122356899999999998766553322 244433332221 123588999999999
Q ss_pred CCCceec-ccCcEEEEeecccCCCCcccccChH
Q 001280 202 SGSPVID-WQGRAVALNAGSKSSSASAFFLPLE 233 (1108)
Q Consensus 202 SGgPv~n-~~G~vVGi~~~~~~~~~~~falPi~ 233 (1108)
-|+|+++ .||.+|||++........+|+.|+.
T Consensus 151 CGlPlVs~~Dg~IVGiHsl~~~~~~~N~F~~f~ 183 (241)
T 3mmg_A 151 AGSPLVSIIDGNILGIHSLTHTTNGSNYFVEFP 183 (241)
T ss_dssp TTCEEEETTTCCEEEEEEEEETTTCCEEEEECC
T ss_pred CCCeEEEcCCCcEEEEEecccCCCCcEEEEcCC
Confidence 9999998 5899999999888777889997763
No 119
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.60 E-value=8.6e-08 Score=89.47 Aligned_cols=59 Identities=31% Similarity=0.496 Sum_probs=51.8
Q ss_pred CCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001280 295 GETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
...|++| ..|.++|||++ ||++||+|++|||+++.+ |.++..++....|+.+.|+|.|.
T Consensus 43 ~~~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 43 TDKGIYV-TRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp TCCSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred CCCCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence 4678887 69999999999 999999999999999966 55888888777889999999884
No 120
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=98.59 E-value=3.5e-08 Score=89.77 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=52.8
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGISM 358 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~~~ 358 (1108)
.|++| ..|.++|||++ ||++||+|++|||+++.++. ++..++.. .|+.+.|+|.|+|+.+
T Consensus 27 ~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~~ 89 (91)
T 2pkt_A 27 QPLAI-SRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEHES 89 (91)
T ss_dssp EEEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECCCC
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCccc
Confidence 56666 79999999999 99999999999999999998 66666766 8899999999988754
No 121
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=98.58 E-value=1.4e-07 Score=89.26 Aligned_cols=65 Identities=23% Similarity=0.406 Sum_probs=58.5
Q ss_pred CceEEEEEecCCCcccc-CC-CCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEEEEEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RL-EPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISMTVNL 362 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL-~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~v 362 (1108)
.|++| ..|.++|||++ || ++||+|++|||+.+.+ +.++..++....|+.+.|+|.|+|+..++++
T Consensus 26 ~~~~V-~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~ 94 (112)
T 1qau_A 26 PPVII-SDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHL 94 (112)
T ss_dssp SCEEE-EEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTSEEEE
T ss_pred CCEEE-EEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCcccceEe
Confidence 56666 79999999999 98 9999999999999999 8999988877788999999999998777776
No 122
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A
Probab=98.57 E-value=1.7e-07 Score=96.87 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=90.5
Q ss_pred eEE-EEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEeeCCCcEEEEEECCCCCCcccccceecc----
Q 001280 650 FGT-GVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYDPSSLGVAGASVVRAA---- 724 (1108)
Q Consensus 650 ~Gs-G~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~dp~~dlAilk~d~~~l~~~~~~~v~~~---- 724 (1108)
.|| ||+|.. +...||||++|++ .+...+.+-..+ -...|..|+||||++...... ..|+++
T Consensus 13 ~ct~G~~v~~-~~~~~vlTaaHc~-~~~~~~~~G~~~---------~~~~~~~DiAlikl~~~~~~~---~~v~~i~~~~ 78 (181)
T 2sga_A 13 RCSLGFNVSV-NGVAHALTAGHCT-NISASWSIGTRT---------GTSFPNNDYGIIRHSNPAAAD---GRVYLYNGSY 78 (181)
T ss_dssp EEECCEEEEE-TTEEEEEECHHHH-TTCSEETTEEEE---------EEECSBSCEEEEEESCGGGCC---CEEECSSSCE
T ss_pred cEeccEEEEE-CCceEEEECcccC-CCCCceeeccee---------CCcCCCCCEEEEEccCCCccc---ceEEecCCcc
Confidence 455 999984 3578999996664 444433222221 123478899999997642221 234332
Q ss_pred -ccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccceEEEEecccCC-CCCceEEcCCeeE
Q 001280 725 -ELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRV 802 (1108)
Q Consensus 725 -~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~V 802 (1108)
.+.....++.|+.|..+|++.+. ..+.++.+... +... .. ......|+.+...++ .|||||++.+ ++
T Consensus 79 ~~~~~~~~~~~G~~v~~~G~~~~~----t~G~v~~~~~~--v~~~--~~--~~~~~~i~~~~c~~~GDSGGPlv~~~-~~ 147 (181)
T 2sga_A 79 QDITTAGNAFVGQAVQRSGSTTGL----RSGSVTGLNAT--VNYG--SS--GIVYGMIQTNVCAQPGDSGGSLFAGS-TA 147 (181)
T ss_dssp EECCEECCCCTTCEEEEEETTTEE----EEEEEEEEEEE--EECG--GG--CEEEEEEEESCCCCTTCTTCEEEETT-EE
T ss_pred eeecccccCCCCCEEEEeecCCCc----cEEEEEEeEEE--EECC--CC--CEEeeeEecccccCCCCCCCEEEECC-EE
Confidence 22222347899999999988652 13344422111 1110 00 001245677755533 6999999977 99
Q ss_pred EEEEeeccccccccCCCCCcceeEecccHHHHHHHH
Q 001280 803 QAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 838 (1108)
Q Consensus 803 vGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl 838 (1108)
+||++..... ..... ..+..|++.++..+
T Consensus 148 vGI~s~g~~~-----~~~~~--~~v~~~v~~~~~~l 176 (181)
T 2sga_A 148 LGLTSGGSGN-----CRTGG--TTFYQPVTEALSAY 176 (181)
T ss_dssp EEEEEEEEEE-----TTTEE--EEEEEEHHHHHHHH
T ss_pred EEEEEeeCCC-----CcCCC--ceEEEEHHHHHHhc
Confidence 9998764321 11122 33569998887755
No 123
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=98.57 E-value=4.8e-08 Score=89.79 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=55.0
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.|++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++. + ++.+.|. +.|+|..
T Consensus 30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~-g~~v~l~-v~r~~~~ 91 (96)
T 2v90_A 30 PGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQG-Q-GSCVSLT-VVDPEAD 91 (96)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHT-T-TTEEEEE-EECCCTT
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C-CCEEEEE-EECCCCc
Confidence 38999999999999999999999999999999999 8999999997 3 8899999 7888764
No 124
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.56 E-value=4.1e-08 Score=94.91 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=58.3
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLT 1073 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~ 1073 (1108)
.|++|..|.++|||+++| |++||.|++|||+++.++++|.++++.. .++.+.|+ +.|+|+.+...
T Consensus 48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~l~~~-~g~~v~l~-v~R~g~~~~~~ 113 (124)
T 1wh1_A 48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSE-ENKNFSLL-IARPELQLDEG 113 (124)
T ss_dssp CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCS-SCCSCCEE-EEECSSCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCHHHHHHHHHhC-CCCEEEEE-EEECCEEeecc
Confidence 489999999999999999 9999999999999999999999999984 48889998 78888764443
No 125
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=1.9e-07 Score=86.51 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=48.4
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
.|++| ..|.++|||++ ||++||+|++|||+++.++. ++...+.. ++.+.|+|.|+|+.
T Consensus 36 ~gv~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~ 96 (100)
T 2eeh_A 36 LGIFV-SKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGSG 96 (100)
T ss_dssp CCEEE-EEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSCC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCcC
Confidence 57777 69999999999 99999999999999999964 44344433 78999999999864
No 126
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=98.56 E-value=1.5e-08 Score=96.43 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=57.3
Q ss_pred CCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEEEEEEE-cccc
Q 001280 295 GETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGISMTVNL-VQDL 366 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~~v-~~~~ 366 (1108)
...|++| ..|.++|||++ ||++||+|++|||+.+.++ .++..++.. .|+++.|+|.|+++..++++ ..++
T Consensus 36 ~~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~~~~~~~~~~~ 109 (114)
T 2edz_A 36 DTDGHLI-RVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLLVLDGDSYEKAVKNQVDL 109 (114)
T ss_dssp TCCSCEE-ECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHH-TCSEEEEEEECHHHHHHHHHHTCCS
T ss_pred CCCCeEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCcceehhhcCcCh
Confidence 3478877 69999999999 9999999999999999885 777777755 48999999999987665554 4333
No 127
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.55 E-value=9.8e-08 Score=87.86 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=55.4
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++. .++.+.|. +.|++..
T Consensus 32 ~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~~ 94 (97)
T 2jil_A 32 RPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ--CGQEAALL-IEYDVSE 94 (97)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH--SCSEEEEE-EEEECCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCCc
Confidence 489999999999999999 99999999999999999 9999999998 48999999 7887764
No 128
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=98.54 E-value=4e-08 Score=90.31 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=54.6
Q ss_pred CCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEEE
Q 001280 295 GETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISMT 359 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~ 359 (1108)
...|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++... |+.+.|+|.|+|+...
T Consensus 28 ~~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~~~ 93 (96)
T 2v90_A 28 GRPGQFL-WEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEADRE 93 (96)
T ss_dssp SCEEEEE-EEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTTSC
T ss_pred CCCCeEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCccc
Confidence 4567777 69999999999 999999999999999999 78888888665 8999999999886543
No 129
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2
Probab=98.53 E-value=3e-06 Score=91.21 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=93.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcC-
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDP- 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~- 115 (1108)
.|-+|.|... ....++|.+|+++ +|||+|||+. .. ..+.+. ....+.++-+..||
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGsLIs~~--~VLTAAHC~~-~~--~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 76 (237)
T 1gvz_A 12 KPWQVAVYHQ----------GHFQCGGVLVHPQ--WVLTAAHCMS-DD--YQIWLGRHNLSKDEDTAQFHQVSDSFLDPQ 76 (237)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECGGGCC-SS--CEEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred CCeEEEEeeC----------CceEEEeEEeeCC--EEEEcHHhCC-CC--CeEEEeecccccCCCCceEEEeeeEecCCc
Confidence 3567777542 2357999999965 9999999997 22 334332 24566677677776
Q ss_pred -----------------CCceEEEEECCCC-cccccccCCCCCCcccCCCCEEEEEecCCCC-C-C----eEEEEEEEEe
Q 001280 116 -----------------VHDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGE-K-V----SILAGTLARL 171 (1108)
Q Consensus 116 -----------------~~DlAlLk~d~~~-~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~-~-~----si~~G~is~~ 171 (1108)
.+|||||+++..- +. ..+.++.|.......|+.+.+.|+.... . . ......+..+
T Consensus 77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~-~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~ 155 (237)
T 1gvz_A 77 FDLSLLKKKYLRPYDDISHDLMLLRLAQPARIT-DAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQ 155 (237)
T ss_dssp SCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCB-TTBCCCCCCSSCCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEE
T ss_pred cCcccccccccccccccCCceEEEEeCCCcccC-CcEeeeECCCCCCCCCCEEEEECCCcccCCCCCCCCccEEEEEeEe
Confidence 6899999998542 22 1345666666667889999999986431 1 1 1112222222
Q ss_pred cCC--CCCCCCCCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeeccc
Q 001280 172 DRD--APHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1108)
Q Consensus 172 ~~~--~~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1108)
... ...|.. ...+ .++=+. ..+-.|.|||||+- +|.++||.+.+.
T Consensus 156 ~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~ 207 (237)
T 1gvz_A 156 SNEKCARAYPE-KMTE---FVLCATHRDDSGSICLGDSGGALIC-DGVFQGITSWGY 207 (237)
T ss_dssp CGGGGCSSCGG-GCCT---TEEEEECSSTTCEECGGGTTCEEEE-TTEEEEEECCCS
T ss_pred ChhHhhhhhhh-cCCC---ceEEEeeCCCCCccCCCCccCcEee-CCEEEEEEEeCC
Confidence 211 011111 1111 122221 13456899999995 789999998764
No 130
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.53 E-value=8.5e-08 Score=92.68 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=57.8
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEEEEEECCEEEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGISMTVN 361 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~ 361 (1108)
..|++| ..|.+++||++ | |++||+|++|||+.|.++.++..++....|+.+.|+|.|+|+.++..
T Consensus 47 ~~gv~V-~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~ 113 (124)
T 1wh1_A 47 DIGIYI-SEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEG 113 (124)
T ss_dssp CCCEEE-EEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCSSCCSCCEEEEECSSCCCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCEEEEEEEECCEEeecc
Confidence 367777 69999999999 9 99999999999999999999999997777899999999999865543
No 131
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=98.53 E-value=8.5e-08 Score=88.26 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=52.8
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++||++||.|++|||+++.++.++..+......++.++|. +.|+|++
T Consensus 34 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~-v~R~g~~ 95 (97)
T 2w4f_A 34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR-VWRERET 95 (97)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE-EECCSSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEE-EEeCCcc
Confidence 4899999999999999999999999999999999987765444332358999999 7888864
No 132
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=98.51 E-value=8.6e-08 Score=87.19 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=50.3
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGISM 358 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~ 358 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++. ++.++..++... |+.+.|+|.|+++..
T Consensus 26 ~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~~ 89 (91)
T 2vsp_A 26 LPGSFI-KEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQD 89 (91)
T ss_dssp CSCCBC--CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC-----
T ss_pred CCCeEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCccc
Confidence 457766 79999999999 99999999999999999 899999888766 899999999988653
No 133
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.51 E-value=2.1e-07 Score=89.86 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=59.3
Q ss_pred CCeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEe
Q 001280 1006 GHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1076 (1108)
Q Consensus 1006 ~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~ 1076 (1108)
..|++|..|.++|||+++ |++||.|++|||+++.++++|...++..+.++.++|+ + |+|+ +.+++..
T Consensus 24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~~dl~~~l~~~~~g~~v~l~-V-R~g~-~~v~l~~ 90 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINIT-T-DQGT-FHLKTGR 90 (125)
T ss_dssp CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEE-E-TTEE-EEEECCB
T ss_pred CCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEE-E-ECCE-EEEEEec
Confidence 358999999999999999 9999999999999999999999999976668999999 6 9998 5555543
No 134
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.51 E-value=1.4e-07 Score=91.01 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=55.7
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.|++|..|.++|||+++||++||.|++|||+++.++ +++.+.++..+.++.++|. +.|+++
T Consensus 51 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~~ 113 (124)
T 3tsv_A 51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-AQKKKD 113 (124)
T ss_dssp SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEE-EEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE-EEECCc
Confidence 389999999999999999999999999999999999 9999999886679999998 677764
No 135
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.51 E-value=2.3e-07 Score=83.71 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=52.4
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++.. ++.+.|. +.|+|.
T Consensus 28 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~--g~~v~l~-v~R~g~ 87 (88)
T 2uzc_A 28 PLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC--TGSLNMT-LQRESD 87 (88)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC--CSEEEEE-EECCCC
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEeCCC
Confidence 78999999999999999999999999999999999 8888888863 7889998 677764
No 136
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Probab=98.51 E-value=9.4e-07 Score=94.34 Aligned_cols=176 Identities=15% Similarity=0.215 Sum_probs=101.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-CeEEEEEecCC----------eEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVNR----------EEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~~v~~~d~----------~~~~a~vv~~d 114 (1108)
.|-+|+|... ....++|.+|+++ +|||+|||+... .....+.+... ..+..+-+..+
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~h 79 (225)
T 1a7s_A 12 FPFLASIQNQ----------GRHFCGGALIHAR--FVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSEN 79 (225)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECS
T ss_pred CCcEEEEecC----------CCcEEEEEEeeCC--EEEEchhccCCCCCCceEEEEeeeECCCCCCcceeEEeEEEEecc
Confidence 3667777652 2467999999965 999999999742 23455655421 45555555544
Q ss_pred ------CCCceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCCCCCCC
Q 001280 115 ------PVHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDAPHYKK 180 (1108)
Q Consensus 115 ------~~~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~~~~~~~ 180 (1108)
..+|||||+++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+.-+....
T Consensus 80 ~y~~~~~~~DIALl~L~~~~~~~-~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~----- 153 (225)
T 1a7s_A 80 GYDPQQNLNDLMLLQLDREANLT-SSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQ----- 153 (225)
T ss_dssp SCBTTTTBSCCEEEEESSCCCCB-TTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGG-----
T ss_pred cccCCCCcCCEEEEEcCCcccCC-CceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCCCcccccceeeeEECCHHH-----
Confidence 34799999997532 21 123444443 33457899999999864321 112222222221110
Q ss_pred CCcccccceEEEE-----eeecCCCCCCCceecccCcEEEEeecccCC--CCcccccChHHHHHHHHHHHhc
Q 001280 181 DGYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS--SASAFFLPLERVVRALRFLQER 245 (1108)
Q Consensus 181 ~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~--~~~~falPi~~i~~~l~~l~~~ 245 (1108)
-. ..++-+ ....-.|+|||||+-. |.++||.+.+... ..-+.+.-+...+..+++..+.
T Consensus 154 C~-----~~~~Ca~~~~~~~~~C~GDSGgPl~~~-g~l~Gi~S~g~~~C~~~p~vyt~V~~~~~WI~~~~~~ 219 (225)
T 1a7s_A 154 CR-----PNNVCTGVLTRRGGICNGDGGTPLVCE-GLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNN 219 (225)
T ss_dssp SC-----TTEEEEECSSSSCBCCTTCTTCEEEET-TEEEEEEEEECSSTTSSCEEEEEGGGGHHHHHHHHHS
T ss_pred hc-----cCceEEeccCCCCCcccCCCcchheeC-CEEEEEEEEccCCcCCCCcEEEEhHHhHHHHHHHhcC
Confidence 00 011211 1244569999999965 7999999876322 1145556666666666655443
No 137
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}
Probab=98.50 E-value=4.6e-06 Score=89.58 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=105.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC-------C-eEEeEEEEEEcC--
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN-------R-EEIPVYPIYRDP-- 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d-------~-~~~~a~vv~~d~-- 115 (1108)
.|-+|.|... ......++|.+|+++ +|||+||++.. ...+.+-..+ . ..+..+.+..++
T Consensus 12 ~Pw~v~l~~~--------~~~~~~CgGtLI~~~--~VLTAAHC~~~-~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~ 80 (238)
T 4e7n_A 12 HRFLVALYTS--------RSRTLFCGGTLINQE--WVLTAAHCDRK-NFRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSK 80 (238)
T ss_dssp CTTEEEEECT--------TTCCEEEEEEECSSS--EEEECGGGCCS-SCEEEESCSCSSSCCTTCEEECEEEEECSSTTC
T ss_pred cCcEEEEEEC--------CCCCEEEEEEEecCC--EEEEhHHcCCC-CCeEEeceeeccccCCCceeEeeeeeEEcCCCC
Confidence 4667777542 123467999999965 99999999984 3333332221 1 123334444344
Q ss_pred -----CCceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCC
Q 001280 116 -----VHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDG 182 (1108)
Q Consensus 116 -----~~DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~~ 182 (1108)
.+|||||+++..-.....+.++.|.......|+.+.+.|+..... .......+..+... ...|....
T Consensus 81 ~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 160 (238)
T 4e7n_A 81 NYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFE 160 (238)
T ss_dssp CCCSSSCCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECGGGGTTTCGGGC
T ss_pred CCCCCCCcEEEEEeCCCccCCCceeeeeCCCCCCCCCCEEEEEECCCCCCCCCCCCccceEeeccccCHHHHhhhccccc
Confidence 369999999753211123556666666777899999999864321 11222233333221 11111100
Q ss_pred cccccceEEEE-----eeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHHHhcC
Q 001280 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERR 246 (1108)
Q Consensus 183 ~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l~~~~ 246 (1108)
.. ....++-+ ....-.|.|||||+- +++++||.+.+... ...+.+..+...+..+++..++.
T Consensus 161 ~~-~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~ 231 (238)
T 4e7n_A 161 LP-ATSRTLCAGILEGGKDTCKGDSGGPLIC-NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGN 231 (238)
T ss_dssp CC-SCCSEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTTC
T ss_pred CC-CCCCeEEeCCCCCCCccCCCCCCcceEE-CCEEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhcC
Confidence 00 01112222 123456999999995 67899999877542 22345566666667776655543
No 138
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=98.50 E-value=9e-08 Score=88.31 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=54.4
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++.. .++.+.|. +.|+|+
T Consensus 33 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~~~~l~-v~R~g~ 94 (98)
T 2jxo_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLV-VDRETD 94 (98)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEE-CCHHHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEE-EECCch
Confidence 38999999999999999999999999999999999 99999999987 57778787 677765
No 139
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=98.50 E-value=1.1e-07 Score=96.64 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=70.0
Q ss_pred cceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEEEEEeeCCCcEEEEEECC--CCCCcccccceec
Q 001280 646 SQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYDP--SSLGVAGASVVRA 723 (1108)
Q Consensus 646 ~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~vv~~dp~~dlAilk~d~--~~l~~~~~~~v~~ 723 (1108)
+...+|+||.|+ .+++|||+.|+ +.+... .+++. +..+. +.+|+..|||+++++. ..+|.
T Consensus 27 ~~~GsGt~F~i~---g~~~VvTA~HV-Vg~~~~-vVt~~--g~r~~---~~f~~~~D~All~i~~~~g~~P~-------- 88 (213)
T 3fan_A 27 SSMGSGGVFTID---GKIKCVTAAHV-LTGNSA-RVSGV--GFNQM---LDFDVKGDFAIADCPNWQGVAPK-------- 88 (213)
T ss_dssp SSEEEEEEEEET---TEEEEEEEGGG-SBTTEE-EEEET--TEEEE---EECEEETTEEEEECTTCCSCCCB--------
T ss_pred cCCCceEEEEEC---CcEEEEEeccE-eCCCCE-EEecC--CcEEE---EEecCCCcEEEEEccCcCCCCCc--------
Confidence 445678888888 67899999665 444443 55544 56654 4779999999999953 46776
Q ss_pred cccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccceEEEEeccc---C-CCCCceEEcCC
Q 001280 724 AELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF---G-STFSGVLTDEH 799 (1108)
Q Consensus 724 ~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~i---g-~~sGGpL~d~~ 799 (1108)
++|+... ..|...+..-+ -+. . .+|+.|.++ + .+|||||+|.+
T Consensus 89 lKlA~~~--~~G~a~~~~~~-----------gv~----~----------------G~i~~~~al~~T~pGdSGsPVvn~d 135 (213)
T 3fan_A 89 AQFCEDG--WTGRAYWLTSS-----------GVE----P----------------GVIGNGFAFCFTACGDSGSPVITEA 135 (213)
T ss_dssp CCBCCTT--CCEEEEEEETT-----------EEE----E----------------EEEETTEEEESSCCCSTTCEEEETT
T ss_pred ceeeeee--ccCceEEEEcc-----------Ccc----c----------------cccccCCEEEecCCCCCCCccCCCC
Confidence 7777532 22211111100 000 0 122222222 2 26999999999
Q ss_pred eeEEEEEeec
Q 001280 800 GRVQAIWGSF 809 (1108)
Q Consensus 800 G~VvGi~~~~ 809 (1108)
|+||||++..
T Consensus 136 G~VIGVHt~s 145 (213)
T 3fan_A 136 GELVGVHTGS 145 (213)
T ss_dssp SCEEEEEEC-
T ss_pred CcEEEEEecc
Confidence 9999999874
No 140
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=98.50 E-value=2.7e-07 Score=83.64 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=52.0
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++... |+.+.|+|.|.+.
T Consensus 27 ~~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 88 (90)
T 2he4_A 27 RPGQYI-RSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90)
T ss_dssp SSSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 357777 79999999999 9999999999999999998 7788888665 8899999999764
No 141
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=98.49 E-value=3.1e-07 Score=88.31 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=55.2
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++..+.++.++|+ +.|+|+
T Consensus 58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g~ 121 (121)
T 2kom_A 58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL-VFRQED 121 (121)
T ss_dssp CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEE-EEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEE-EEeCCC
Confidence 379999999999999999 99999999999999998 59999999987668899998 677763
No 142
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.49 E-value=2.6e-07 Score=85.20 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=52.8
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.++ +++...++. .++.++|+ +.|+|+
T Consensus 37 ~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~g~ 98 (98)
T 1ihj_A 37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE--ADFKIELE-IQTFDK 98 (98)
T ss_dssp EEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH--SCSEEEEE-EEEC--
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCCeEEEE-EEeCCC
Confidence 389999999999999999 999999999999999997 889999987 48899999 788774
No 143
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A
Probab=98.48 E-value=6.1e-06 Score=87.95 Aligned_cols=181 Identities=18% Similarity=0.298 Sum_probs=103.5
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~~ 116 (1108)
.|-+|.|.... .......++|.+|+++ +|||+|||+.. ...+.+.. .+.+...-+..||.
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLI~~~--~VLTAAhC~~~---~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 80 (226)
T 4ag1_A 12 RPYMAYLEIVT------SNGPSKFCGGFLIRRN--FVLTAAHCAGR---SITVTLGAHNITEEEDTWQKLEVIKQFRHPK 80 (226)
T ss_dssp STTEEEEEEEC------SSSSCEEEEEEEEETT--EEEECGGGCCS---EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCcEEEEEEEc------CCCcccEEEEEEEeCC--EEEECcccCCC---CeEEEeCCcccCCCCCcceEEEEEEEEeCCC
Confidence 46678887642 1122467999999965 99999999963 45555432 24566777777876
Q ss_pred -------CceEEEEECCCCcccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCC-CCCCCC
Q 001280 117 -------HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDA-PHYKKD 181 (1108)
Q Consensus 117 -------~DlAlLk~d~~~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~~-~~~~~~ 181 (1108)
+||||||++....-...+.++.|. ...+..|+.+.+.|+..... .......+....... ..+.
T Consensus 81 y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~-- 158 (226)
T 4ag1_A 81 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR-- 158 (226)
T ss_dssp CCTTTCTTCCEEEEESSCCCCCSSSCCCCCC-----CCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECGGGGTTST--
T ss_pred CCCCCCcCcEEEEEECCCCccCCceeccccCCcccCCCCCCEEEEEECCCCCCCCCCCCEeEEEEEEEcChHHccccc--
Confidence 599999997532111133444443 34457899999999864321 122222333332211 0111
Q ss_pred CcccccceEEEE-----eeecCCCCCCCceecccCcEEEEeecccCCC-CcccccChHHHHHHHHHH
Q 001280 182 GYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSSS-ASAFFLPLERVVRALRFL 242 (1108)
Q Consensus 182 ~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~-~~~falPi~~i~~~l~~l 242 (1108)
.+.. ...+-+ ....-.|.|||||+- ++.++||.+.+.... .-+.+..+...+..+++.
T Consensus 159 ~~~~--~~~~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~p~vyt~v~~~~~WI~~~ 222 (226)
T 4ag1_A 159 DFDH--NLQLCVGNPRKTKSAFKGDSGGPLLC-AGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQI 222 (226)
T ss_dssp TCCT--TTEEEESCTTSCCBCCTTCTTCEEEE-TTEEEEEEEECBTTCCSCEEEEEHHHHHHHHHHH
T ss_pred CcCc--cceEeeccCCCCCcCccCCCCCceEE-cCEEEEEEEECCCCCCCCCEEEEhHHHHHHHHHH
Confidence 1110 011221 123456999999996 679999998765332 244555666666666544
No 144
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.48 E-value=4.1e-07 Score=83.03 Aligned_cols=60 Identities=28% Similarity=0.379 Sum_probs=49.9
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.++.+.+.+-....|+.+.|+|.|++.
T Consensus 28 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 28 DRIVLV-QSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSS 88 (93)
T ss_dssp SSSCEE-EEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEEEEECCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEEEEECCC
Confidence 467777 69999999999 9999999999999999998766433233568999999999764
No 145
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.48 E-value=2.9e-07 Score=85.66 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=51.1
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.|++|.+|.++|||+++| |++||.|++|||+++.+ ++++.+.++..+ + .++|+ +.|.+.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~-~v~l~-v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-N-PVVFM-VQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-S-SEEEE-EECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-C-cEEEE-EEECCC
Confidence 489999999999999999 99999999999999999 999999999853 3 78888 666553
No 146
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=98.48 E-value=2.7e-07 Score=87.15 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=55.7
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++..+.++.++|. +.|+|+.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~~~ 103 (111)
T 2koj_A 39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLL-VFRQEEA 103 (111)
T ss_dssp SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEE-EEECCCC
T ss_pred cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEeCCCC
Confidence 489999999999999999 99999999999999966 59999999987668999999 7888764
No 147
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=98.48 E-value=2.2e-07 Score=83.72 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=51.8
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++.... +.+.|+|.|+|+
T Consensus 26 ~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~ 86 (87)
T 2pa1_A 26 TPIMV-TKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRITS 86 (87)
T ss_dssp EEEEE-EEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred CCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence 56666 79999999999 999999999999999999 789988887654 889999999875
No 148
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.48 E-value=3.5e-07 Score=81.87 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=50.0
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVR 1061 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~ 1061 (1108)
+++|..+.++|||+++| |++||.|++|||+++. +++++.++++..+.++.++|.
T Consensus 26 ~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 82 (85)
T 2i04_A 26 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 82 (85)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 78999999999999999 9999999999999999 569999999987768888887
No 149
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.47 E-value=1.5e-07 Score=85.96 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=49.7
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++||++||.|++|||+++.+++++ ++++.+..++.++|+ +.|++.
T Consensus 30 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~-~~~~~~~~g~~v~l~-v~R~~~ 88 (93)
T 2dls_A 30 IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHL-EVVKLIKSGAYVALT-LLGSSS 88 (93)
T ss_dssp SCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHH-HHHHHHTSSSEEEEE-EECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH-HHHHhhcCCCEEEEE-EEECCC
Confidence 78999999999999999999999999999999997554 444444468999999 677653
No 150
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=98.47 E-value=2.9e-07 Score=83.40 Aligned_cols=58 Identities=29% Similarity=0.371 Sum_probs=52.5
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.|++|..|.++|||+++||++||.|++|||+++.++ +++.+.++.. ++.+.|. +.|.+
T Consensus 28 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~~ 87 (90)
T 2he4_A 28 PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR--EDEARLL-VVGPS 87 (90)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS--SSEEEEE-EECCC
T ss_pred CCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCcEEEE-EEccC
Confidence 389999999999999999999999999999999999 9999999973 7889998 56654
No 151
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.47 E-value=1.3e-07 Score=86.64 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=54.1
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++..+ +.++|. +.|+|++
T Consensus 31 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~-v~R~g~~ 91 (94)
T 1vb7_A 31 PIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA--SPLRLQ-LDRSSGP 91 (94)
T ss_dssp EEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC--SSEEEE-EECCCCC
T ss_pred CeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC--CcEEEE-EEECCcC
Confidence 88999999999999999999999999999999998 99999999753 789998 7888864
No 152
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.47 E-value=6.2e-07 Score=83.57 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=51.0
Q ss_pred CCeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEe
Q 001280 1006 GHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHL 1065 (1108)
Q Consensus 1006 ~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~r 1065 (1108)
..|++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++. ..++.+.|. +.|
T Consensus 44 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~g~~v~l~-v~R 103 (104)
T 3sfj_A 44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTK-RSEEVVRLL-VTR 103 (104)
T ss_dssp CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTC-TTCSEEEEE-EEE
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCCEEEEE-EEc
Confidence 458999999999999999999999999999999966 6699999987 458889888 454
No 153
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.46 E-value=2.1e-07 Score=85.23 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=50.2
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeec--CCHHHHHHHHHcC-CCCceEEEEE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRT--PDLEAFVNVTKEI-EHGEFVRVRT 1062 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v--~~l~~f~~~v~~~-~~~~~v~l~~ 1062 (1108)
+++|.+|.+||||+++||++||.|++|||+++ .+|+++.+.+++. +.++.+.|.+
T Consensus 40 ~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV 97 (101)
T 3qik_A 40 AVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLV 97 (101)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEE
Confidence 67899999999999999999999999999997 5999999999985 4588898874
No 154
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2
Probab=98.46 E-value=4.2e-06 Score=89.06 Aligned_cols=179 Identities=17% Similarity=0.243 Sum_probs=102.5
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|+|.... .......++|.+|+++ +|||+|||+.. ...+.+. ....+..+-+..||.
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLI~~~--~VLTAAhC~~~---~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~ 80 (224)
T 3rp2_A 12 RPYMAHLDIVT------EKGLRVICGGFLISRQ--FVLTAAHCKGR---EITVILGAHDVRKRESTQQKIKVEKQIIHES 80 (224)
T ss_dssp CTTEEEEEEEC------TTSCEEEEEEEESSSS--EEEECGGGCCS---EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCcEEEEEEec------CCCcEEEEEeEEeeCC--EEEEchhcCCC---CcEEEEeccccCcCCCCcEEEEEEEEEECCC
Confidence 46788887642 1112467999999965 99999999863 4555543 234567777777776
Q ss_pred -------CceEEEEECCCC-cccccccCCCC--CCcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCC-CCCCC
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPL--APEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDA-PHYKK 180 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l--~~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~~-~~~~~ 180 (1108)
+||||||++..- +. ..+.++.| ....+..|+.+.+.|+..... .......+..+.... ..+..
T Consensus 81 y~~~~~~~DIALl~L~~~~~~~-~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~ 159 (224)
T 3rp2_A 81 YNSVPNLHDIMLLKLEKKVELT-PAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRY 159 (224)
T ss_dssp CCSSSCCSCCEEEEESSCCCCB-TTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTTTTC
T ss_pred ccCCCCCccEEEEEcCCCcccC-CcccceecCCcccCCCCCCEEEEEeCCCCCCCCCCCceeeEeeeeecChHHhccccc
Confidence 699999997532 11 12333333 344567899999999853211 112222222222210 00111
Q ss_pred CCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecccCCC-CcccccChHHHHHHHHH
Q 001280 181 DGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSSS-ASAFFLPLERVVRALRF 241 (1108)
Q Consensus 181 ~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~-~~~falPi~~i~~~l~~ 241 (1108)
.... ..+-+. ...-.|.|||||+- ++.++||.+.+..-. ..+.+..+...+..+++
T Consensus 160 ~~~~----~~~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~p~vyt~v~~y~~WI~~ 221 (224)
T 3rp2_A 160 YEYK----FQVCVGSPTTLRAAFMGDSGGPLLC-AGVAHGIVSYGHPDAKPPAIFTRVSTYVPWINA 221 (224)
T ss_dssp CCTT----TEEEECCTTSCCBCCTTTTTCEEEE-TTEEEEEEEECCTTCCSCEEEEEHHHHHHHHHH
T ss_pred cCcC----CEEEecCCCCCCeeccCCCCCeEEE-cceeeEEEEECCCCCCCCcEEEEHHHhHHHHHH
Confidence 1111 112111 23345999999996 579999998765321 23445555555555544
No 155
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.46 E-value=1.5e-07 Score=86.68 Aligned_cols=61 Identities=30% Similarity=0.480 Sum_probs=54.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISM 358 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~ 358 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .|+.+.|+|.|+++..
T Consensus 31 ~~~~~V-~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~~ 95 (97)
T 2jil_A 31 SRPVVI-TSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYDVSET 95 (97)
T ss_dssp CEEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEECCCC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCcC
Confidence 456666 79999999999 9 99999999999999999 8888888876 8899999999987643
No 156
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*
Probab=98.46 E-value=1.1e-05 Score=86.55 Aligned_cols=184 Identities=16% Similarity=0.175 Sum_probs=103.6
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------Ce-EEeEEEEEEcC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------RE-EIPVYPIYRDP 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~-~~~a~vv~~d~ 115 (1108)
.|-+|.|.... .....++|.+|+++ +|||+||++.. . ..+.+.. .. .+....+..+|
T Consensus 12 ~Pw~v~l~~~~--------~~~~~CgGtLI~~~--~VLTAAHC~~~-~--~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~ 78 (234)
T 3s9c_A 12 HPFLVALYTSA--------SSTIHCAGALINRE--WVLTAAHCDRR-N--IRIKLGMHSKNIRNEDEQIRVPRGKYFCLN 78 (234)
T ss_dssp CTTEEEEEETT--------EEEEEEEEEEEETT--EEEECGGGCCT-T--EEEEESCSSSSSCCTTCEEECEEEEECCSS
T ss_pred CCeEEEEEECC--------CCcEEEeeEEeeCC--EEEEchhhcCC-C--ceEEEeecccccccCCcceEEeeeEEEeCC
Confidence 46678876421 12356999999965 99999999983 2 3333321 11 12233333344
Q ss_pred C-------CceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC----CeEEEEEEEEecC--CCCCCCCCC
Q 001280 116 V-------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK----VSILAGTLARLDR--DAPHYKKDG 182 (1108)
Q Consensus 116 ~-------~DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~----~si~~G~is~~~~--~~~~~~~~~ 182 (1108)
. +|||||+++..-.-...+.++.|.......|+.+.+.|+..... .......+..+.. -...|....
T Consensus 79 ~~~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 158 (234)
T 3s9c_A 79 TKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVP 158 (234)
T ss_dssp CSSTTCGGGCCEEEEESSCCCCBTTBCCCBCCSSCCCTTCEEEEEESSCSBTTBCCSSCEEEEEEEECGGGTTTTCTTSC
T ss_pred CCCCCCCcCceEEEEECCccccCCcccccccCCCCCCCCCeEEEEeeCCCCCCCCCccccccceEecCHHHhhhcccCCC
Confidence 4 59999999753211113556666666677899999999864321 1122222222222 111121111
Q ss_pred cccccceEEEE-----eeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHHHhcC
Q 001280 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERR 246 (1108)
Q Consensus 183 ~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l~~~~ 246 (1108)
..+ .++-+ ....-.|.|||||+- +++++||.+.+... ...+.+..+...+..+++..++.
T Consensus 159 ~~~---~~~Ca~~~~~~~~~C~GDSGgPl~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~ 227 (234)
T 3s9c_A 159 ADS---RTLCAGILKGGRDTCHGDSGGPLIC-NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGN 227 (234)
T ss_dssp TTS---SEEEEECTTSSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred CCc---ceEEeecCCCCCccCCCCCCCeEEE-eCCcEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcCC
Confidence 111 12222 123446999999996 56899999887542 12355566666777776555543
No 157
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.46 E-value=2.5e-07 Score=85.32 Aligned_cols=59 Identities=32% Similarity=0.545 Sum_probs=50.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+++.++ .++..++.. .|+.+.|+|.|+|+
T Consensus 36 ~~g~~V-~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~ 98 (98)
T 1ihj_A 36 TTGIFI-KGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQTFDK 98 (98)
T ss_dssp EEEEEE-EEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEEC--
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Confidence 457777 79999999999 9 999999999999999997 667666655 78999999999874
No 158
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2
Probab=98.45 E-value=1.9e-06 Score=91.73 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=89.5
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCC-eEEEEEecC---------CeEEeEEEEEEc-
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP-VVAEAMFVN---------REEIPVYPIYRD- 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~-~~~~v~~~d---------~~~~~a~vv~~d- 114 (1108)
.|-+|.|.... ......++|.+|+++ +|||+|||+.... ..+.+.+.. ...+...-+..+
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h~ 82 (221)
T 1fuj_A 12 RPYMASLQMRG-------NPGSHFCGGTLIHPS--FVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLNN 82 (221)
T ss_dssp CTTEEEEEETT-------BTTCCCEEEEEEETT--EEEECGGGGSSSCGGGEEEEESCSBTTSCCTTCEEEEEEEEEECC
T ss_pred cCCEEEEEEec-------CCCCEEEEEEEecCC--EEEEchHhcCcCCCCceEEEEeeeeccCCCCceEEEEEEEEEeCC
Confidence 36678886531 112467999999965 9999999998532 245565532 344555545443
Q ss_pred -----CCCceEEEEECCCCcccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCCCCCCCCC
Q 001280 115 -----PVHDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDAPHYKKDG 182 (1108)
Q Consensus 115 -----~~~DlAlLk~d~~~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~~~~~~~~~ 182 (1108)
..+|||||+++........+.++.|. ...+..|+.+.+.|+..... .......+......-.
T Consensus 83 y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~C~------ 156 (221)
T 1fuj_A 83 YDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCR------ 156 (221)
T ss_dssp CBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEECTTCC------
T ss_pred CCCCCCcccEEEEEeCCccccCCcceeeECCCCcCCCCCCCEEEEEEeCCCCCCCCHHHHhhcccceEEeeecC------
Confidence 33799999997532111123444443 33357899999999864321 1122222222211100
Q ss_pred cccccceEEEE-----eeecCCCCCCCceecccCcEEEEeec
Q 001280 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAG 219 (1108)
Q Consensus 183 ~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~ 219 (1108)
. . ++-+ ....-.|+|||||+. +|.++||.+.
T Consensus 157 --~-~--~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~s~ 192 (221)
T 1fuj_A 157 --P-H--NICTFVPRRKAGICFGDSGGPLIC-DGIIQGIDSF 192 (221)
T ss_dssp --T-T--EEEEECSSSSCBCCTTCTTCEEEE-TTEEEEEEEE
T ss_pred --C-c--eeeeccCCCCCCCCCCCCCCeeEE-CCEEeEEEEE
Confidence 0 0 1211 224567999999997 6899999987
No 159
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.45 E-value=1e-07 Score=90.96 Aligned_cols=61 Identities=25% Similarity=0.516 Sum_probs=53.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC---ChhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT---QFLKLETLLDDGVDKNIELLIERGGISM 358 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~---~~~~l~~~l~~~~g~~v~l~V~R~g~~~ 358 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++.. .|+.+.|+|.|+++..
T Consensus 48 ~~gv~V-~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 113 (117)
T 2o2t_A 48 ELGIFV-QEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK-AKDTVQLVIARGSLPQ 113 (117)
T ss_dssp CEEEEE-CCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESSCCGG
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeCCcce
Confidence 467776 79999999999 9 9999999999999998 78888877765 6889999999988743
No 160
>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A
Probab=98.45 E-value=3.6e-06 Score=89.98 Aligned_cols=179 Identities=15% Similarity=0.191 Sum_probs=100.7
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-CeEEEEEecC---------CeEEeEEEEEEcC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN---------REEIPVYPIYRDP 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~~v~~~d---------~~~~~a~vv~~d~ 115 (1108)
.|-+|+|... ....++|.+|+++ +|||+||++... ...+.|.+.. .+.+...-+..||
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp 79 (228)
T 2xw9_A 12 RPYMASVQLN----------GAHLCGGVLVAEQ--WVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHP 79 (228)
T ss_dssp CTTEEEEEET----------TEEEEEEEEEETT--EEEECGGGGSSCTTCCEEEEESCSBSSSCCTTCEEEEEEEEEECT
T ss_pred CCcEEEEEEC----------CCeEEEEEEEeCC--EEEEcHHhCCCCCCCceEEEEcccccCCCCCcceEEEEEEEEeCC
Confidence 4567888652 2467999999965 999999999732 2356666542 3456677677776
Q ss_pred C-------CceEEEEECCC-CcccccccCCCCCC--cccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC--CCCCC
Q 001280 116 V-------HDFGFFRYDPS-AIQFLNYDEIPLAP--EAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR--DAPHY 178 (1108)
Q Consensus 116 ~-------~DlAlLk~d~~-~~~~~~~~~l~l~~--~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~--~~~~~ 178 (1108)
. +||||||++.. .+. ..+.++.|.. ..+..|+.+.+.|+..... .......+..+.. -...|
T Consensus 80 ~y~~~~~~~DIAll~L~~~~~~~-~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~ 158 (228)
T 2xw9_A 80 DSQPDTIDHDLLLLQLSEKATLG-PAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRT 158 (228)
T ss_dssp TCCTTCCTTCCEEEEESSCCCCB-TTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTCCCCSBCEEEECCEECHHHHTSTT
T ss_pred CCCCCCCCCcEEEEEeCCCcccC-CCeeecccCCcccCCCCCCEEEEEEecccCCCCCCCchheEEEEEEcChhHhcCcc
Confidence 5 69999999753 221 1234444433 4567899999999864321 1122212222211 00011
Q ss_pred CC-CCcccccceEEEE---eeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHH
Q 001280 179 KK-DGYNDFNTFYMQA---ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 179 ~~-~~~~~~~~~~i~~---~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~ 241 (1108)
.. ....+ .++=+ ....-.|.|||||+- +|.++||.+.+... ...+.+..+...+..++.
T Consensus 159 ~~~~~~~~---~~~Ca~~~~~~~C~GDsGgPL~~-~~~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~ 225 (228)
T 2xw9_A 159 HHDGAITE---RLMCAESNRRDSCKGDAGGPLVC-GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225 (228)
T ss_dssp TTTTCCCT---TEEEECCSSCBCCTTCTTCEEEE-TTEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHH
T ss_pred ccCCcccC---CEEecCCCCCccCCCCCcccEEE-CCEEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHH
Confidence 10 01111 12222 123456999999996 57999999876422 123344555555554443
No 161
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=1.9e-07 Score=86.47 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=51.0
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.|++|..|.++|||+++||++||.|++|||+++.++ +++.+.++. ++.+.|. +.|+|+
T Consensus 36 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~---~~~v~l~-v~R~g~ 95 (100)
T 2eeh_A 36 LGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS---SSRLHMM-VRRMGS 95 (100)
T ss_dssp CCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS---CSSEEEE-EEECSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC---CCEEEEE-EEECCc
Confidence 389999999999999999999999999999999995 666666664 7889998 788876
No 162
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.45 E-value=2e-07 Score=87.89 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=52.9
Q ss_pred CCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCEEE
Q 001280 295 GETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGISM 358 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~V~R~g~~~ 358 (1108)
...|++| ..|.++|||++ ||++||+|++|||+++.++.+++.+. ....|+.+.|+|.|+|+.+
T Consensus 44 ~~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~~ 108 (110)
T 1x5q_A 44 DDEGIFI-SRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPS 108 (110)
T ss_dssp TCCSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECSSCC
T ss_pred CCCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECCccC
Confidence 3577777 69999999999 99999999999999999976666544 3348999999999998753
No 163
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.45 E-value=3.3e-07 Score=82.90 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=51.2
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++||++||.|++|||+++. +++++...++.. ++.+.|. +.|++.
T Consensus 28 ~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~--g~~v~l~-v~R~~~ 87 (89)
T 2q3g_A 28 PLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC--GERLSLG-LSRAIT 87 (89)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC--TTEEEEE-EEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCEEEEE-EEeCCC
Confidence 789999999999999999999999999999999 458888888863 7788888 677764
No 164
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Probab=98.44 E-value=7.2e-06 Score=88.36 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=94.9
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEecC---------CeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~d---------~~~~~a~vv~~d 114 (1108)
.|-+|+|... ....++|.+|+++ +|||+|||+... .....|++.. ...+..+-+..+
T Consensus 14 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h 81 (240)
T 1mza_A 14 RPFMASIQYG----------GHHVCGGVLIDPQ--WVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPF 81 (240)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred CCeEEEEeeC----------CceEEEEEEecCC--EEEECHHhCCCCCCCCCeEEEeCceecCCCCCceEEEEEEEEEeC
Confidence 4667888642 2467999999965 999999998632 3345565532 245666666666
Q ss_pred CC-------CceEEEEECCCCcccccccCCCCCC-cccCCCCEEEEEecCCCCC------CeEEEEEEEEecC---C-CC
Q 001280 115 PV-------HDFGFFRYDPSAIQFLNYDEIPLAP-EAACVGLEIRVVGNDSGEK------VSILAGTLARLDR---D-AP 176 (1108)
Q Consensus 115 ~~-------~DlAlLk~d~~~~~~~~~~~l~l~~-~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~---~-~~ 176 (1108)
|. +|||||+++..-.....+.++.|.. ..+..|+.+.+.|+..... .......+.-+.. . ..
T Consensus 82 p~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~ 161 (240)
T 1mza_A 82 SRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQS 161 (240)
T ss_dssp CCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTSTT
T ss_pred CCccCCCCCceEEEEEeCCCcccCCceeeeecCCcccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHHcCCcc
Confidence 54 6999999975321111344555544 5668899999999864321 1222223332221 1 01
Q ss_pred CCCCCCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeeccc
Q 001280 177 HYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1108)
Q Consensus 177 ~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1108)
.|...... ...+|=+. ...-.|.|||||+- +|.++||.+.+.
T Consensus 162 ~~~~~~~~--~~~~~Ca~~~~~~~~~C~GDSGGPL~~-~~~l~Gi~S~g~ 208 (240)
T 1mza_A 162 YYNGDPFI--TKDMVCAGDAKGQKDSCKGDAGGPLIC-KGVFHAIVSGGH 208 (240)
T ss_dssp TTTTTTCC--CTTEEEEECTTSCCCCCTTCTTCEEEE-TTEEEEEECSSC
T ss_pred eeCCCCcC--CCCeEeecCCCCCCccCCCCCCCeeEE-CCEEEEEEEECC
Confidence 12211000 11122221 23457999999996 679999998764
No 165
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.44 E-value=3.6e-07 Score=84.39 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=53.2
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
|++|..|.++|||+++||++||.|++|||+++. +++++...++. .++.+.|+ +.|+++
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 94 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK--SGNKISLR-TTALEN 94 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH--SCSEEEEE-EECSCS
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCCEEEEE-EEECCC
Confidence 789999999999999999999999999999999 89999999994 48899999 778765
No 166
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.44 E-value=7.4e-08 Score=92.06 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=54.5
Q ss_pred ceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEE
Q 001280 899 QVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIE 965 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~ 965 (1108)
.+++|..|.++|||+++ |++||+|++|||++|.++.++...+.....+ +.+.++|.|+++..+
T Consensus 42 ~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g----~~v~l~v~r~~~~~~ 105 (117)
T 1uit_A 42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQC----DTITILAQYNPHVHQ 105 (117)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCC----SEEEEEECCCSCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEECCchhh
Confidence 47889999999999999 9999999999999999998888776444554 789999999887554
No 167
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=98.44 E-value=1.6e-07 Score=86.64 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=52.5
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++....++.+.++|.|+|+
T Consensus 33 ~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 33 PGQFI-RSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (98)
T ss_dssp SCEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence 57776 79999999999 999999999999999999 8999998877677788899988765
No 168
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.43 E-value=3e-07 Score=82.91 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=49.6
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.+++| ..|.++|||++ ||++||+|++|||+++.++ .++..++... |+.+.|+|.|+|.
T Consensus 27 ~~~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 27 MPLTI-SSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRESD 87 (88)
T ss_dssp EEEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred CCeEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 56666 79999999999 9999999999999999999 5666666544 8899999999874
No 169
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.43 E-value=1.2e-07 Score=90.78 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=56.7
Q ss_pred CeEEEEEecC--CChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCeEEE
Q 001280 1007 HGVYVARWCH--GSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKPRV 1071 (1108)
Q Consensus 1007 ~gV~V~~v~~--gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~~~~ 1071 (1108)
.|++|..|.+ +|||+++||++||.|++|||+++.++ ++|.+.++.. ++.+.|+ +.|+|+...
T Consensus 44 ~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~--g~~v~l~-v~R~g~~~~ 109 (118)
T 2yub_A 44 TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT--SQTLQLL-IEHDPVPQR 109 (118)
T ss_dssp CEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC--SSCEEEE-EEECSSCCC
T ss_pred CcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC--CCEEEEE-EEECCEEEe
Confidence 4899999999 99999999999999999999999999 9999999985 8889998 788887643
No 170
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}
Probab=98.43 E-value=4.9e-06 Score=88.49 Aligned_cols=176 Identities=13% Similarity=0.072 Sum_probs=97.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEe---CCCcEEEEcccccCCCC-----eEEEEEec--CC----eEEeEEEE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVD---KRRGIILTNRHVVKPGP-----VVAEAMFV--NR----EEIPVYPI 111 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~---~~~G~ILTn~HVV~~~~-----~~~~v~~~--d~----~~~~a~vv 111 (1108)
.|.+++|.+.. ......|+|.+|+ ++ +|||++||+.... ..+.+... +. ..+.++-+
T Consensus 6 ~p~~g~l~~~~-------~~~~~~CgGslI~s~s~~--~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~~ 76 (218)
T 3cp7_A 6 SPHIGKVFFST-------NQGDFVCSANIVASANQS--TVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEEL 76 (218)
T ss_dssp CTTEEEEEEEE-------TTEEEEEEEEEBCCTTSC--EEEECGGGTBCCTTCBBCEEEEEEETCSSSCCTTCCEEEEEE
T ss_pred CceEEEEEEEc-------CCCCeEEEEEEEecCCCC--EEEEChHhcCcCCCCeeecCEEEECcccCCCCCccEEEEEEE
Confidence 46788887642 1234679999998 54 9999999996431 23444432 11 13455545
Q ss_pred EEcC--------CCceEEEEECCCC-cccc-ccc-CCCCCCcccCCCCEEEEEecCCCCC--C-e-EEEEEEEEecCCCC
Q 001280 112 YRDP--------VHDFGFFRYDPSA-IQFL-NYD-EIPLAPEAACVGLEIRVVGNDSGEK--V-S-ILAGTLARLDRDAP 176 (1108)
Q Consensus 112 ~~d~--------~~DlAlLk~d~~~-~~~~-~~~-~l~l~~~~~~~G~~V~~iG~p~g~~--~-s-i~~G~is~~~~~~~ 176 (1108)
..|| .+|+||||++... +.+- .+. +++|... ...|+.+.+.|++.... . . ..+ ... .
T Consensus 77 ~~hp~y~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~-~~~g~~~~v~GwG~~~~~~~~~l~~C---~~~--~-- 148 (218)
T 3cp7_A 77 VTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFN-QPRGQYYSAYGYPAAAPFNGQELHSC---HGT--A-- 148 (218)
T ss_dssp EECHHHHHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCS-CCSSCEEEEEECCCSTTCCSSSCEEE---EEE--C--
T ss_pred EECcccccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeec-CCCCCEEEEEeCCCCCCCCCceeeEe---eee--E--
Confidence 4442 4699999998651 1111 122 3344322 24799999999986421 1 1 111 010 0
Q ss_pred CCCCCCcccccceEEEEeeecCCCCCCCceecc---cCcEEEEeecccCCC-CcccccCh-HHHHHHHHHHH
Q 001280 177 HYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDW---QGRAVALNAGSKSSS-ASAFFLPL-ERVVRALRFLQ 243 (1108)
Q Consensus 177 ~~~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n~---~G~vVGi~~~~~~~~-~~~falPi-~~i~~~l~~l~ 243 (1108)
+.. .+.+ . .+..-+....|+|||||+.. .++++||++.+..-. ...|.-.. +.++.+++..+
T Consensus 149 -~~~-~~~~-~--~~~~~Ca~~~GDSGGPlv~~~~g~~~lvGIvS~G~gc~~~~~~~p~~~~~~~~l~~~a~ 215 (218)
T 3cp7_A 149 -TND-PMGS-S--TQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNSYGYTFLPNVMFGPYFGSGAQQNYNYAS 215 (218)
T ss_dssp -EEC-TTSS-S--CEEEECCCCTTCTTCEEEESSSSSSCEEEECCEEETTEEEEEEECCCCHHHHHHHHHHT
T ss_pred -EcC-CCCC-c--eEEecCCCCCCCcCCeeEEccCCCeEEEEEEccccCCCCCcEEcCcCCHHHHHHHHHHH
Confidence 000 0001 0 11222334679999999854 378999998765332 23333222 56666666553
No 171
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.43 E-value=6.1e-07 Score=86.65 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=56.2
Q ss_pred ceEEEEeecCCCHHhHhccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeecc
Q 001280 899 QVLRVKGCLAGSKAENMLEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDV 972 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~aL~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~~~ 972 (1108)
.+++|..|.++|||+++|++||+|++|||++|.+|.++...+.....+ +.+.++| |+|+ +++++..
T Consensus 25 ~gv~V~~V~~~spA~~aL~~GD~Il~InG~~v~~~~dl~~~l~~~~~g----~~v~l~V-R~g~---~~v~l~~ 90 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKVLTPGLVIESINGMPTSNLTTYSAALKTISVG----EVINITT-DQGT---FHLKTGR 90 (125)
T ss_dssp CCEEEEEECSSSGGGGTSCTTCEEEEETTEECSSHHHHHHHHTTCCTT----CEEEEEE-TTEE---EEEECCB
T ss_pred CceEEEEECCCChHHHhcCCCCEEEEECCEEcCCHHHHHHHHHhcCCC----CEEEEEE-ECCE---EEEEEec
Confidence 578899999999999889999999999999999999999888544555 7899999 9987 5555543
No 172
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2
Probab=98.43 E-value=9.6e-06 Score=87.06 Aligned_cols=164 Identities=19% Similarity=0.274 Sum_probs=96.0
Q ss_pred cEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC------------------CceE
Q 001280 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV------------------HDFG 120 (1108)
Q Consensus 68 ~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~------------------~DlA 120 (1108)
..++|.+|+++ +|||+|||+. .. ..+.+. ....+..+-+..||. +|||
T Consensus 22 ~~CgGsLIs~~--~VLTAAHC~~-~~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIA 96 (235)
T 1ton_A 22 YLCGGVLIDPS--WVITAAHCYS-NN--YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLM 96 (235)
T ss_dssp SEEEEEEEETT--EEEECGGGCC-SC--CEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC--------CCCCSTTCCE
T ss_pred CeEEEEEecCC--EEEEcHHhCC-CC--cEEEeCcccccCCCCcceEEEEEEEEeCCCCcccccccccccccCCCcCCEE
Confidence 57999999965 9999999996 22 334432 134555665666654 4999
Q ss_pred EEEECCCC-cccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCcccccceEE
Q 001280 121 FFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYM 191 (1108)
Q Consensus 121 lLk~d~~~-~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~~~~~~~~~~i 191 (1108)
||+++..- +. ..+.++.|....+..|+.+.+.|+..... .......+..+... ...|+. ...+ .+|
T Consensus 97 Ll~L~~~~~~~-~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~ 171 (235)
T 1ton_A 97 LLHLSEPADIT-GGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKD-NVTD---VML 171 (235)
T ss_dssp EEEESSCCCCC-SSCCCCCCCCSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGCGGGGST-TGGG---GEE
T ss_pred EEEcCCccccC-CcceeeeCCCCCCCCCCEEEEEecCCCCCCCCccCccceEEEEEEeCHHHHHHHhcC-cCCC---CeE
Confidence 99997532 21 13456666666678999999999864321 12222333333221 111211 1111 122
Q ss_pred EEe-----eecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHH
Q 001280 192 QAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFL 242 (1108)
Q Consensus 192 ~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l 242 (1108)
=+. ...-.|.|||||+- +|.++||.+.+... ..-+.+.-+...+..+++.
T Consensus 172 Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~ 230 (235)
T 1ton_A 172 CAGEMEGGKDTCAGDSGGPLIC-DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKV 230 (235)
T ss_dssp EEECTTCSCBCCTTCTTCEEEE-TTEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHH
T ss_pred eeccCCCCCcCCCCCCccccEE-CCEEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence 221 23457999999996 68999999876321 1234445555555555443
No 173
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.42 E-value=5.6e-07 Score=79.53 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=50.0
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
|++|.++.++|||+++| |++||.|++|||+++. +++++.+.++... ..+.|. +.|+|
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~-v~R~g 81 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK--GKLKMV-VQRDE 81 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST--TEEEEE-EEC--
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC--CeEEEE-EEeCC
Confidence 78999999999999999 9999999999999999 9999999999743 378888 66654
No 174
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.42 E-value=5.3e-07 Score=84.28 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=52.7
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1076 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~ 1076 (1108)
.+++|.+|.++|||+++| |++||.|++|||+++.+ ++++...++. .++.++|. +.|++....+.+.+
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~~~~~~~~~p 102 (105)
T 2awx_A 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN--TSDFVYLK-VAKPTSMYISRHHH 102 (105)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS--CCSEEEEE-EECCCC--------
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEcCCCCCCccccc
Confidence 489999999999999999 99999999999999966 6777788875 37889999 88999887777665
No 175
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.42 E-value=2.8e-07 Score=86.89 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=51.2
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHH--HHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEA--FVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~--f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++||++||.|++|||+++.++.+ ....++. .++.++|+ +.|+|+.
T Consensus 46 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~g~~ 107 (110)
T 1x5q_A 46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG--AGTAVQMR-VWRESGP 107 (110)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS--CCSEEEEE-EEECSSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC--CCCeEEEE-EEECCcc
Confidence 48999999999999999999999999999999999544 4444444 58999999 7888865
No 176
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.42 E-value=1.7e-07 Score=90.34 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=55.8
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.++|..|.++|||+++| |++||.|++|||+++.+ ++++.++++..+.++.++|. +.|++..
T Consensus 46 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~~~ 109 (122)
T 1v5q_A 46 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE-IEFDVAE 109 (122)
T ss_dssp CCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEE-EEEECCC
T ss_pred CcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEECCcc
Confidence 57999999999999999 99999999999999988 99999999987668899999 7888763
No 177
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.42 E-value=2.8e-07 Score=89.32 Aligned_cols=65 Identities=23% Similarity=0.406 Sum_probs=58.6
Q ss_pred CceEEEEEecCCCcccc-CC-CCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEEEEEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RL-EPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISMTVNL 362 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL-~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~v 362 (1108)
.|++| ..|.++|||++ || ++||+|++|||+.+.+ +.++..++....|+.+.|+|.|+|+..++++
T Consensus 33 ~~~~V-~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~ 101 (127)
T 1b8q_A 33 PPVII-SDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHL 101 (127)
T ss_dssp SCEEE-CCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCSEEECC
T ss_pred CCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCceEEEEE
Confidence 46666 79999999999 98 9999999999999999 8999998877788999999999999887776
No 178
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.42 E-value=3.7e-07 Score=82.37 Aligned_cols=59 Identities=29% Similarity=0.306 Sum_probs=50.4
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..+ ++|||+ +||++||.|++|||+++.++ +++.+.+++.+.++.++|. +.|+|+
T Consensus 27 ~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g~ 87 (88)
T 3bpu_A 27 GGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLL-VQRQTR 87 (88)
T ss_dssp SSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE-EEEECC
T ss_pred CcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEE-EEeCCc
Confidence 37889887 999999 99999999999999999998 9999999976668999998 677764
No 179
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=98.42 E-value=3.9e-07 Score=83.79 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=53.6
Q ss_pred cceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEE
Q 001280 898 RQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGRE 963 (1108)
Q Consensus 898 ~~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~ 963 (1108)
..+++|..|.++|||+++ |++||+|++|||++|.++.++........++ +.+.++|.|+|+.
T Consensus 33 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g----~~v~l~v~R~g~~ 95 (97)
T 2w4f_A 33 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAG----TAVQMRVWRERET 95 (97)
T ss_dssp BCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSC----SEEEEEEECCSSC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCC----CeEEEEEEeCCcc
Confidence 367889999999999999 9999999999999999998877665444455 8899999999864
No 180
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.41 E-value=1.4e-07 Score=91.57 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=62.2
Q ss_pred ccCeEEEEcChhHHHhcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHH
Q 001280 262 TLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLET 337 (1108)
Q Consensus 262 ~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~ 337 (1108)
.||+.+.......+..+|+. ...|++| ..|.++|||++ | |++||+|++|||+.+ .++.++..
T Consensus 43 ~lG~~i~~~~~~~~~~~g~~-------------~~~gv~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~ 108 (128)
T 1nf3_C 43 PLGFYIRDGSSVRVTPHGLE-------------KVPGIFI-SRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTD 108 (128)
T ss_dssp CCCEEEEEEEEEEEETTEEE-------------EEEEEEE-EEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHH
T ss_pred CccEEEEccccccccccccC-------------CCCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 47777775544444445554 3457776 79999999999 9 999999999999999 67788877
Q ss_pred HHhcCCCCeEEEEEEECCE
Q 001280 338 LLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 338 ~l~~~~g~~v~l~V~R~g~ 356 (1108)
++.. .++.|.|+|.|+++
T Consensus 109 ~l~~-~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 109 MMIA-NSRNLIITVRPANQ 126 (128)
T ss_dssp HHHH-TTTSEEEEEECCCC
T ss_pred HHHc-CCCeEEEEEEECCc
Confidence 7764 46679999999875
No 181
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.41 E-value=3e-07 Score=82.27 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=50.3
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|.+|.++|||+++||++||.|++|||+++.++ +++...++.. ++.++|. +.|+++
T Consensus 26 ~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~R~~~ 85 (85)
T 1rgw_A 26 PLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA--SYNLSLT-LQKSKR 85 (85)
T ss_dssp CCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC--SSCEEEE-EESCCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcC--CCeEEEE-EEeCCC
Confidence 67999999999999999999999999999999998 7888877753 4568888 677763
No 182
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*
Probab=98.41 E-value=1.9e-06 Score=92.40 Aligned_cols=180 Identities=15% Similarity=0.169 Sum_probs=103.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC--------CeEEeEEEEEEcCC-
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN--------REEIPVYPIYRDPV- 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d--------~~~~~a~vv~~d~~- 116 (1108)
.|-+|.|.. ....++|.+|+++ +|||+||++.. ...+.+-..+ .+.+..+-+..+|.
T Consensus 12 ~Pw~v~l~~-----------~~~~CgGsLIs~~--~VLTAAHC~~~-~~~v~~G~~~~~~~~~~~~~~~~v~~~~~hp~y 77 (231)
T 2aiq_A 12 HRFLALVYA-----------NGSLCGGTLINQE--WVLTARHCDRG-NMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTR 77 (231)
T ss_dssp CTTEEEEEE-----------TTEEEEEEECSSS--EEEECGGGCCS-SCEEEESCSCTTSCCTTCEEECEEEEECCSSCC
T ss_pred CCeEEEEEc-----------CCCeEEEEEEeCC--EEEEcHHcCCC-CCEEEEecccccccCCCceEEEEEEEEEECCCC
Confidence 366777752 1356999999965 99999999984 3333322211 13455555555654
Q ss_pred ------CceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCC
Q 001280 117 ------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDG 182 (1108)
Q Consensus 117 ------~DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~~ 182 (1108)
+||||||++..-.....+.++.|.......|+.+.+.|+..... .......+..+... ...|..
T Consensus 78 ~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-- 155 (231)
T 2aiq_A 78 NDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG-- 155 (231)
T ss_dssp SSSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTT--
T ss_pred CCCCCCCCEEEEEecCCCCCCCcEEeeECCCCCCCCCCEEEEEeCCccCCCCCccCchhhhccceecchhhhhhhhcC--
Confidence 59999999753211123556666666667899999999864321 11222222222210 001111
Q ss_pred cccccceEEEE-----eeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHHHhc
Q 001280 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQER 245 (1108)
Q Consensus 183 ~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l~~~ 245 (1108)
..+ .+|-+ ....-.|.|||||+- +|+++||.+.+... ...+.+..+...+..+++..+.
T Consensus 156 ~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~ 223 (231)
T 2aiq_A 156 LAA---TTLCAGILEGGKDTCKGDSGGPLIC-NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISG 223 (231)
T ss_dssp CCS---SEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred CCc---CcEEeccCCCCCcccCCcCCCcEEE-CCEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcC
Confidence 111 11222 124557999999996 57999999876321 2234456666666666655443
No 183
>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*
Probab=98.41 E-value=8.2e-06 Score=87.73 Aligned_cols=176 Identities=17% Similarity=0.233 Sum_probs=101.7
Q ss_pred CceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEe-------cCCeEEeEEEEEEcC----
Q 001280 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMF-------VNREEIPVYPIYRDP---- 115 (1108)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~-------~d~~~~~a~vv~~d~---- 115 (1108)
|-+|.|... ....++|.+|+++ +|||+|||+... ..+.+-. ..++.+..+-+..||
T Consensus 13 Pw~v~l~~~----------~~~~CgGsLIs~~--~VLTAAHC~~~~-~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~ 79 (237)
T 2zch_P 13 PWQVLVASR----------GRAVCGGVLVHPQ--WVLTAAHCIRNK-SVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDM 79 (237)
T ss_dssp TTEEEEESS----------SSEEEEEEEEETT--EEEECGGGCCSS-CEEEESCSBSSSCCTTCEEEEEEEEEECTTSCG
T ss_pred CCEEEEeeC----------CCeEEEEEEecCC--EEEEcHHhcCCC-ceEEEecccccCCCCCcEEEEEEEEecCCCcch
Confidence 557777531 2467999999965 999999999843 2232211 124566677677766
Q ss_pred --------------CCceEEEEECCC-CcccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC
Q 001280 116 --------------VHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD 174 (1108)
Q Consensus 116 --------------~~DlAlLk~d~~-~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~ 174 (1108)
.+|||||+++.. .+. ..+.++.|.......|+.+++.|+..... .......+..+...
T Consensus 80 ~~~~~~~~~~~~~~~~DIALl~L~~~~~~~-~~v~pi~Lp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~ 158 (237)
T 2zch_P 80 SLLKNRFLRPGDDSSHDLMLLRLSEPAELT-DAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISND 158 (237)
T ss_dssp GGGTSSSCCTTCBCTTCCEEEEESSCCCCC-SSCCCCCCCSSCCCTTCEEEEEESCCSSSSSCCCCSBCEEEEEEEECHH
T ss_pred hhhcccccccCCCCCcceEEEEeCCCCccC-CcEeeeECCCCCCCCCCEEEEEeCCccCCCCCcCCcccEEeEEEEeCHH
Confidence 569999999753 222 13455666666678899999999864321 11222222222210
Q ss_pred --CCCCCCCCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHH
Q 001280 175 --APHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 175 --~~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~ 241 (1108)
...|.. ...+ .+|-+. ...-.|.|||||+- ++.++||.+.+... ...+.+..+...+..+++
T Consensus 159 ~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~ 231 (237)
T 2zch_P 159 VCAQVHPQ-KVTK---FMLCAGRWTGGKSTCSGDSGGPLVC-NGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKD 231 (237)
T ss_dssp HHHHHCSS-BCCT---TEEEEECTTCSCBCCTTCTTCEEES-SSSEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred HhcccccC-CCCc---eEEeecCCCCCCcccCCCccCeEEE-CCEEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHH
Confidence 000111 0111 122221 23557999999995 57999999876521 223444555555555544
No 184
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Probab=98.41 E-value=7.3e-06 Score=87.34 Aligned_cols=176 Identities=16% Similarity=0.225 Sum_probs=102.4
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|+|... ....++|.+|+++ +|||+||++.. . +.+.+. +.+.+...-+..||.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 76 (223)
T 1lo6_A 12 HPYQAALYTS----------GHLLCGGVLIHPL--WVLTAAHCKKP-N--LQVFLGKHNLRQRESSQEQSSVVRAVIHPD 76 (223)
T ss_dssp CTTEEEEEET----------TEEEEEEEEEETT--EEEECGGGCCT-T--CEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCCEEEEecC----------CCEEEEeEEecCC--EEEECccCCCC-C--eEEEEcceecCCCCCCcEEEEEEEEEECCC
Confidence 3567777531 2467999999965 99999999973 2 334332 235566666667764
Q ss_pred -------CceEEEEECCCC-cccccccCCCCCCcccCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CCCCCCCC
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--APHYKKDG 182 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~----~si~~G~is~~~~~--~~~~~~~~ 182 (1108)
+|||||+++..- +. ..+.++.|.......|+.+.+.|+..... .......+.-+... ...|.. .
T Consensus 77 y~~~~~~~DIAll~L~~~~~~~-~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~ 154 (223)
T 1lo6_A 77 YDAASHDQDIMLLRLARPAKLS-ELIQPLPLERDCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPG-Q 154 (223)
T ss_dssp CCTTTCTTCCEEEEESSCCCCB-TTBCCCCBCCCTTCCCCEEEEEESSCCTTSSCCSBCEEEEEEEECHHHHHHHSTT-T
T ss_pred CCCCCCcCeEEEEEECCcccCC-CceeecccCCCCCCCCCEEEEEEECCCCCCCcCceeeEEEEEEeCHHHhhhhhCC-C
Confidence 699999997532 21 13456666666668999999999864321 12222222222210 001111 1
Q ss_pred cccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHH
Q 001280 183 YNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFL 242 (1108)
Q Consensus 183 ~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l 242 (1108)
..+ .+|-+. ...-.|.|||||+- +|.++||.+.+... ...+.+.-+...+..+++.
T Consensus 155 ~~~---~~~Ca~~~~~~~~~C~GDsGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~ 219 (223)
T 1lo6_A 155 ITQ---NMLCAGDEKYGKDSCQGDSGGPLVC-GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 219 (223)
T ss_dssp CCT---TEEEEECTTTCCBCCTTTTTCEEEE-TTEEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHH
T ss_pred CCC---CeEEeecCCCCCeeccccCCCcEEe-CCEEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHH
Confidence 111 122221 23457999999996 57999999876311 2234445555555555443
No 185
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.41 E-value=1.2e-07 Score=88.39 Aligned_cols=66 Identities=8% Similarity=0.021 Sum_probs=57.3
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1076 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~ 1076 (1108)
+++|..|.++|||+++||++||.|++|||+++.++ .++...++.. ++.++|. +.|+++.+.+++++
T Consensus 30 ~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~--g~~v~l~-v~R~g~~~~~~v~p 97 (103)
T 1wf7_A 30 PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC--TGSLNMT-LQRASAAAKSEPVS 97 (103)
T ss_dssp EEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC--SSEEEEE-ECCCSCCCCCCCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEeCCCcCCCCCCC
Confidence 68999999999999999999999999999999987 7777777763 7789998 78999877666655
No 186
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Probab=98.41 E-value=6.2e-06 Score=88.70 Aligned_cols=175 Identities=18% Similarity=0.178 Sum_probs=101.5
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcC-
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDP- 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~- 115 (1108)
.|-+|.|... ....++|.+|+++ +|||+|||+. .. ..+.+. +.+.+..+-+..||
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~-~~--~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~ 76 (237)
T 1ao5_A 12 QPWQVAVYYQ----------KEHICGGVLLDRN--WVLTAAHCYV-DQ--YEVWLGKNKLFQEEPSAQHRLVSKSFPHPG 76 (237)
T ss_dssp CTTEEEEEET----------TEEEEEEEEEETT--EEEECTTCCC-SS--CEEEESCCBSSSCCSSCEECCEEEEEECTT
T ss_pred cCCEEEEeeC----------CCeEEEEEEeeCC--EEEECHHHCC-CC--CEEEecccccccCCCCcEEEEEEEEEcCCC
Confidence 3567777642 2467999999965 9999999996 32 344432 13445555566665
Q ss_pred -----------------CCceEEEEECCCC-cccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEe
Q 001280 116 -----------------VHDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARL 171 (1108)
Q Consensus 116 -----------------~~DlAlLk~d~~~-~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~ 171 (1108)
.+|||||+++..- +. ..+.++.|....+..|+.+.+.|+..... .......+..+
T Consensus 77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~-~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~ 155 (237)
T 1ao5_A 77 FNMSLLMLQTIPPGADFSDDLMLLRLSKPADIT-DVVKPIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLL 155 (237)
T ss_dssp SCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCC-SSSCCCCCCCSCCCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEE
T ss_pred cCcccccccccccccCCCCCEEEEEeCCccccC-CceeCCCcCCCCCCCCCEEEEEECCccCCCCCCCCCcccEEEEEec
Confidence 5799999997532 21 13456666666678999999999864321 11222223222
Q ss_pred cCC--CCCCCCCCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHH
Q 001280 172 DRD--APHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALR 240 (1108)
Q Consensus 172 ~~~--~~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~ 240 (1108)
... ...|.. ...+ .+|-+. ...-.|.|||||+- +|.++||.+.+... ..-+.+..+...+..++
T Consensus 156 ~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~ 230 (237)
T 1ao5_A 156 PNENCAKVYLQ-KVTD---VMLCAGEMGGGKDTCRDDSGGPLIC-DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIK 230 (237)
T ss_dssp CHHHHHHHCSS-CCCT---TEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHH
T ss_pred ChhHhhhhhcc-cCCC---CEEEEccCCCCCCCCCCCCcceEEE-CCEEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHH
Confidence 210 001111 1111 122221 23457999999996 68999999876321 12344555555555554
Q ss_pred H
Q 001280 241 F 241 (1108)
Q Consensus 241 ~ 241 (1108)
+
T Consensus 231 ~ 231 (237)
T 1ao5_A 231 D 231 (237)
T ss_dssp H
T ss_pred H
Confidence 4
No 187
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}
Probab=98.40 E-value=3e-06 Score=90.77 Aligned_cols=188 Identities=14% Similarity=0.183 Sum_probs=105.8
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-CeEEEEEecC------CeEEeEEEEEEc----
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN------REEIPVYPIYRD---- 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~~v~~~d------~~~~~a~vv~~d---- 114 (1108)
.|-+|.|... ....++|.+|+++ +|||+|||+... ...+.+.+.. +..+..+-+..+
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~h~y~~ 79 (235)
T 3h7t_A 12 EPWAVGVLVD----------EKPFCGGSILTAN--FVITAAQCVDGTKPSDISIHYGSSYRTTKGTSVMAKKIYIVRYHP 79 (235)
T ss_dssp STTEEEEEET----------TSCCEEEEESSSS--EEEECHHHHTTCCGGGEEEEESCSBSSSSSEEEEEEEEEECSCBT
T ss_pred CCcEEEEecC----------CCceEeEEEeeCC--EEEECHHHCCCCCCCeeEEEcCccccccCCceeeeeeEEeeecCC
Confidence 4667888753 2456999999965 999999999532 3456666542 345555555543
Q ss_pred --CCCceEEEEECCCC-cccccccCCCCCCc--ccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCC
Q 001280 115 --PVHDFGFFRYDPSA-IQFLNYDEIPLAPE--AACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKD 181 (1108)
Q Consensus 115 --~~~DlAlLk~d~~~-~~~~~~~~l~l~~~--~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~ 181 (1108)
..+|+|||+++..- +....+.++.|... .+..|+.+++.|+..... .......+.-+... ...|...
T Consensus 80 ~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~ 159 (235)
T 3h7t_A 80 LTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQI 159 (235)
T ss_dssp TTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHHHHHHHTT
T ss_pred CCCCCCeEEEEeccccccCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHHHHHhhhc
Confidence 23699999997432 21112344444433 378999999999864321 12222223322210 0001110
Q ss_pred Ccccc-cceEEEE-----eeecCCCCCCCceecccCcEEEEeecccCC--CCcccccChHHHHHHHHHHHhcC
Q 001280 182 GYNDF-NTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS--SASAFFLPLERVVRALRFLQERR 246 (1108)
Q Consensus 182 ~~~~~-~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~--~~~~falPi~~i~~~l~~l~~~~ 246 (1108)
....+ ...+|=+ ....-.|.|||||+. +|+++||.+.+..- ...+.+..+...+..+++..+..
T Consensus 160 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~C~~~~p~vyt~v~~~~~WI~~~i~~~ 231 (235)
T 3h7t_A 160 EADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQ-NGTLVGVASYISSMPSEFPSVFLRVGYYVLDIKDIISGK 231 (235)
T ss_dssp TCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEE-TTEEEEEECCCTTCCTTSCEEEEEGGGGHHHHHHHHTTC
T ss_pred ccCccccCCeEecCCCCCCCccccCCCCCceee-CCeEEEEEEecCCCCCCCCceEEEHHHHHHHHHHHHhCC
Confidence 00000 0112222 223447999999996 78899999876431 23345566666677776655544
No 188
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.40 E-value=8.4e-07 Score=79.98 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=48.0
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCCh--hHHHHHHh-cCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQF--LKLETLLD-DGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~--~~l~~~l~-~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..+ ++|||+.||++||+|++|||+++.++ .++..++. ...|+++.|+|.|+|+
T Consensus 26 ~~~~~v-~~v-~~spA~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 26 GGGQRV-KQI-VDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp SSSEEE-EEC-CC--CCTTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred CCcEEE-EEe-cCChhHhCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence 356666 566 99999989999999999999999998 77777776 4678999999999875
No 189
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A
Probab=98.40 E-value=8.2e-06 Score=86.88 Aligned_cols=174 Identities=17% Similarity=0.208 Sum_probs=100.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|+|.. ....++|.+|+++ +|||+||++.. . ..+.+. +.+.+..+-+..||.
T Consensus 12 ~Pw~v~l~~-----------~~~~CgGsLIs~~--~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 75 (222)
T 1hj8_A 12 QPHQVSLNS-----------GYHFCGGSLVNEN--WVVSAAHCYKS-R--VEVRLGEHNIKVTEGSEQFISSSRVIRHPN 75 (222)
T ss_dssp CTTEEEEES-----------SSEEEEEEEEETT--EEEECGGGCCS-S--CEEEESCSBTTSCCSCCEEEEEEEEEECTT
T ss_pred CCEEEEEEc-----------CCcEEEeEEecCC--EEEECHHhcCC-C--eEEEEcccccccCCCCcEEEEEEEEEECCC
Confidence 356777742 2357999999965 99999999973 2 334332 235566666777764
Q ss_pred -------CceEEEEECCCC-cccccccCCCCCCcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCCC
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKKD 181 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~~~~~ 181 (1108)
+||||||++..- +. ..+.++.|....+..|+.+.+.|+..... .......+..+... ...|..
T Consensus 76 y~~~~~~~DIALl~L~~~~~~~-~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~- 153 (222)
T 1hj8_A 76 YSSYNIDNDIMLIKLSKPATLN-TYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG- 153 (222)
T ss_dssp CBTTTTBSCCEEEEESSCCCCS-SSCCCCBCCSSCCCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHHSTT-
T ss_pred CCCCCCCCcEEEEEECCcccCC-CceeccCCCCCCCCCCCEEEEEECCCCCCCCCCCceeEEEEEEEcCHHHhhhhccC-
Confidence 699999997532 21 13456666666678899999999864321 11222222222110 000111
Q ss_pred CcccccceEEEE-----eeecCCCCCCCceecccCcEEEEeecccCC---CCcccccChHHHHHHHHH
Q 001280 182 GYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 182 ~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~---~~~~falPi~~i~~~l~~ 241 (1108)
...+ .++-+ ....-.|.|||||+- +|+++||.+.+..- ..-+.+.-+...+..+++
T Consensus 154 ~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~C~~~~~p~vyt~v~~~~~WI~~ 217 (222)
T 1hj8_A 154 MITN---AMFCAGYLEGGKDSCQGDSGGPVVC-NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 217 (222)
T ss_dssp CCCT---TEEEESCTTSSCBCCTTCTTCEEEE-TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred CCCC---CeEEeccCCCCCccCCCCcccceEE-CCEEEEEEeecCCCCCCCcCcEEEEhHHhHHHHHH
Confidence 0111 12222 123457999999996 68999999876421 122334444444444443
No 190
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.40 E-value=3.5e-07 Score=84.85 Aligned_cols=60 Identities=27% Similarity=0.355 Sum_probs=50.8
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.+++||++ ||++||+|++|||+.+.++.+...+.....++.+.|+|.|+|+
T Consensus 34 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~v~l~v~R~g~ 94 (101)
T 1uez_A 34 GVGIYV-SLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGR 94 (101)
T ss_dssp TCCEEE-EEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSSSCCEEECCCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcCCCeEEEEEEECCc
Confidence 467777 79999999999 9999999999999999999885544344567789999999876
No 191
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*
Probab=98.40 E-value=5.6e-06 Score=88.63 Aligned_cols=184 Identities=14% Similarity=0.128 Sum_probs=104.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec-------CCeE-EeEEEEEEcCC-
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV-------NREE-IPVYPIYRDPV- 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~-------d~~~-~~a~vv~~d~~- 116 (1108)
.|-+|.|... ....++|.+|+++ +|||+||++.. ...+.+... +... ...+.+..+|.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~-~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~ 78 (234)
T 3s69_A 12 HRSLVAFFNS----------TGFFCSGTLINEE--WVLTAAHCDNT-NFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKK 78 (234)
T ss_dssp CTTEEEEECS----------SCEEEEEEEEETT--EEEECGGGCCS-SCEEEESCCCSSSCCTTCEEECEEEEEECTTCC
T ss_pred CceEEEEeeC----------CCeEEeEEEeeCC--EEEEchhhCCC-CceEEecccccccccCCcceeeceEEEECCCcc
Confidence 4667777542 2467999999965 99999999973 333333221 1122 23344444543
Q ss_pred ------CceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCC
Q 001280 117 ------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDG 182 (1108)
Q Consensus 117 ------~DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~~ 182 (1108)
+|||||+++..-.-...+.++.|.......|+.+.+.|+..... .......+..+... ...|....
T Consensus 79 ~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 158 (234)
T 3s69_A 79 NDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELL 158 (234)
T ss_dssp TTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTCC
T ss_pred CCCCCcccEEEEeeCCcCCCCCcceeeecCCCCCCCCCEEEEEECCCCCCCCcCcccccceeEEeecCHHHHhhhccccc
Confidence 69999999753211124556666666777899999999864321 11222222222210 00011111
Q ss_pred cccccceEEEE-----eeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHHHhcC
Q 001280 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERR 246 (1108)
Q Consensus 183 ~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l~~~~ 246 (1108)
..+ ..+-+ ....-.|.|||||+- +++++||.+.+... ...+.+.-+...+..+++..++.
T Consensus 159 ~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~ 227 (234)
T 3s69_A 159 TEY---RTLCAGILEGGKDTCGGDSGGPLIC-NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGN 227 (234)
T ss_dssp TTS---CEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred CCc---ceEeccCCCCCCccCCCCCccceEE-cCEEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcCC
Confidence 111 11211 223456999999996 67899999876532 12355566677777776655544
No 192
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.40 E-value=1.8e-07 Score=87.19 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=54.7
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.++++.. ++.++|. +.|+|+.
T Consensus 30 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~--g~~v~l~-v~R~g~~ 90 (103)
T 1v5l_A 30 PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA--SYQLCLK-IDRAETR 90 (103)
T ss_dssp EEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC--CSEEECE-ECCCTTT
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEECCeE
Confidence 7899999999999999999999999999999999 99999999974 8899998 7888864
No 193
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.39 E-value=5.5e-07 Score=81.32 Aligned_cols=58 Identities=28% Similarity=0.352 Sum_probs=52.1
Q ss_pred eEEEEEecCCChhhh-cCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHR-YGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~-~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|.++.++|||++ +||++||.|++|||+++. +++++.+.++..+ + .++|+ +.|.+.
T Consensus 26 ~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~-~v~l~-v~r~~~ 86 (88)
T 1kwa_A 26 HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-G-SITFK-IVPSYR 86 (88)
T ss_dssp GEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-E-EEEEE-EECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC-C-cEEEE-EECCcC
Confidence 689999999999999 899999999999999999 9999999999865 5 78888 566654
No 194
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.39 E-value=6.7e-07 Score=86.19 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=54.8
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.+++|..|.++|||+++| |++||.|++|||+++. +++++.++++..+.++.++|. +.|++
T Consensus 44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~ 106 (123)
T 1ueq_A 44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV-LCRGY 106 (123)
T ss_dssp CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE-EEESC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEeCC
Confidence 378999999999999999 9999999999999999 689999999987668999998 67766
No 195
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2
Probab=98.39 E-value=5.8e-06 Score=88.24 Aligned_cols=174 Identities=18% Similarity=0.222 Sum_probs=99.6
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|.|... ....++|.+|+++ +|||+|||+.. . ..+.+. ..+.+..+-+..||.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGsLI~~~--~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 76 (225)
T 1npm_A 12 QPWQAALFQG----------ERLICGGVLVGDR--WVLTAAHCKKQ-K--YSVRLGDHSLQSRDQPEQEIQVAQSIQHPC 76 (225)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECGGGCCS-S--CEEEESCSBTTC--CCCEEECEEEEEECTT
T ss_pred cCcEEEEeeC----------CceEEEEEEECCC--EEEEhHHcCCC-C--ceEEEeeeEcCCCCCCcEEEEEEEEEECCC
Confidence 3567777531 2467999999965 99999999972 2 344442 245566666666654
Q ss_pred ----------CceEEEEECCCC-cccccccCCCCCCcccCCCCEEEEEecCCCC------CCeEEEEEEEEecCC--CCC
Q 001280 117 ----------HDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGE------KVSILAGTLARLDRD--APH 177 (1108)
Q Consensus 117 ----------~DlAlLk~d~~~-~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~------~~si~~G~is~~~~~--~~~ 177 (1108)
+||||||++..- +. ..+.++.|.......|+.+.+.|+.... ........+..+... ...
T Consensus 77 y~~~~~~~~~~DIALl~L~~~~~~~-~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 155 (225)
T 1npm_A 77 YNNSNPEDHSHDIMLIRLQNSANLG-DKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERA 155 (225)
T ss_dssp CCSSCTTCCTTCCEEEEESSCCCCS-SSSCCCEECSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHH
T ss_pred CCCCCccCccccEEEEeeCCcccCC-CceeceECCCCCCCCCCEEEEEeCCcccCCCCCCCccceEeEEeeecHHHhhHH
Confidence 499999997532 21 1344555555567889999999986431 112222233322210 000
Q ss_pred CCCCCcccccceEEEE----eeecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHH
Q 001280 178 YKKDGYNDFNTFYMQA----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALR 240 (1108)
Q Consensus 178 ~~~~~~~~~~~~~i~~----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~ 240 (1108)
|.. ...+ .+|=+ ....-.|.|||||+- +|+++||.+.+... ...+.+.-+...+..++
T Consensus 156 ~~~-~~~~---~~~Ca~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~ 221 (225)
T 1npm_A 156 YPG-KITE---GMVCAGSSNGADTCQGDSGGPLVC-DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIK 221 (225)
T ss_dssp STT-TCCT---TEEEEECTTCCBCCTTCTTCEEEE-TTEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHH
T ss_pred hCC-CCCC---CEEeecCCCCCeecCCCCCchheE-CCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHH
Confidence 111 0111 12222 234567999999996 68999999876321 12233444444444443
No 196
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.39 E-value=1.4e-07 Score=90.07 Aligned_cols=61 Identities=23% Similarity=0.379 Sum_probs=55.7
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC---CHHHHHHHHHcCCCCceEEEEEEEeCCeEE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP---DLEAFVNVTKEIEHGEFVRVRTVHLNGKPR 1070 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~---~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~ 1070 (1108)
.|++|..|.++|||+++| |++||.|++|||+++. +++++.+.++. .++.++|. +.|+++++
T Consensus 49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~~~ 113 (117)
T 2o2t_A 49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK--AKDTVQLV-IARGSLPQ 113 (117)
T ss_dssp EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH--CCSEEEEE-EESSCCGG
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc--CCCEEEEE-EEeCCcce
Confidence 489999999999999999 9999999999999999 99999999987 37889998 78888753
No 197
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.39 E-value=5.9e-07 Score=84.48 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=53.7
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcC--CCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEI--EHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~--~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|.+|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. + +..++|+ +.|.+.+
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~-~~~v~l~-v~R~~~~ 98 (108)
T 3cbz_A 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK-PGPIVLT-VAKSGGG 98 (108)
T ss_dssp CEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS-SSCEEEE-EECCCC-
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC-CCeEEEE-EEeCCCC
Confidence 489999999999999999 99999999999999999 89999999986 3 3459998 7777654
No 198
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.39 E-value=5.9e-07 Score=82.39 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=52.6
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++. +++++...++. .++.++|. +.|++.
T Consensus 33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~ 94 (96)
T 1d5g_A 33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN--TGQVVHLL-LEKGQS 94 (96)
T ss_dssp SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS--CCSEEEEE-EECCSC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEcCCC
Confidence 378999999999999999 9999999999999999 66899999886 47889998 677764
No 199
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.38 E-value=7e-07 Score=82.23 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=52.8
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeEE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPR 1070 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~~ 1070 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++.. ++.+.|. +.|++...
T Consensus 30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~R~~~~~ 93 (98)
T 2opg_A 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT--PQRVRLT-LYRDEAPY 93 (98)
T ss_dssp CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC--CSEEEEE-EEECSSCC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEcCCCCC
Confidence 389999999999999999 99999999999999988 57888888763 4789998 78887643
No 200
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.38 E-value=1.4e-07 Score=90.28 Aligned_cols=63 Identities=22% Similarity=0.428 Sum_probs=55.8
Q ss_pred CCceEEEEEecC--CCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEEEEE
Q 001280 296 ETGLLVVDSVVP--GGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGISMTV 360 (1108)
Q Consensus 296 ~~G~lVv~~V~~--~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~ 360 (1108)
..|++| ..|.+ ++||++ ||++||+|++|||+.|.+| .++..++... |+.+.|+|.|+|+..++
T Consensus 43 ~~gv~V-~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~~~~~ 110 (118)
T 2yub_A 43 ATTVQV-KEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPVPQRL 110 (118)
T ss_dssp CCEEEE-EECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSSCCCC
T ss_pred CCcEEE-EEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCEEEee
Confidence 467776 79999 999999 9999999999999999999 9999888776 88999999999886543
No 201
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.38 E-value=8e-07 Score=84.85 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=53.2
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
+++|.+|.++|||+++| |++||.|++|||+++. +++++.+.++.. +..++|+ +.|+|+.
T Consensus 54 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~g~~ 115 (117)
T 2fne_A 54 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT--KGTVTLM-VLSSDET 115 (117)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC--CSSEEEE-EEECSCE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEeCCcc
Confidence 79999999999999999 9999999999999999 889999999874 3459998 7888865
No 202
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=98.38 E-value=7.5e-07 Score=85.82 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=51.6
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.|++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. +..++|. +.|..
T Consensus 59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~~ 119 (123)
T 2iwq_A 59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA--GNPVVFM-VQSII 119 (123)
T ss_dssp CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC--CSSEEEE-EECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECC
Confidence 489999999999999999 99999999999999998 99999999985 3478888 56644
No 203
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*
Probab=98.38 E-value=2.1e-06 Score=91.14 Aligned_cols=149 Identities=16% Similarity=0.216 Sum_probs=89.2
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-CeEEEEEecC---------CeEEeEEEEEEc-
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN---------REEIPVYPIYRD- 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~~v~~~d---------~~~~~a~vv~~d- 114 (1108)
.|-+|+|... ....++|.+|+++ +|||+||++... ...+.+.+.. ...+..+-+..+
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h~ 79 (218)
T 2z7f_E 12 WPFMVSLQLR----------GGHFCGATLIAPN--FVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENG 79 (218)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECHHHHTTSCGGGCEEEESCSBTTSCCTTCEEEEEEEEEESC
T ss_pred cCcEEEEEeC----------CCcEEEEEEccCC--EEEEcHHhcCCCCcCcEEEEEeceecCCCCCceEEEEEEEEEccC
Confidence 3667888652 2467999999965 999999999753 2335555542 245555555554
Q ss_pred -----CCCceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCCCCCCCC
Q 001280 115 -----PVHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDAPHYKKD 181 (1108)
Q Consensus 115 -----~~~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~~~~~~~~ 181 (1108)
..+|+||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+...-. ..
T Consensus 80 y~~~~~~~DIALl~L~~~~~~~-~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~C~---~~ 155 (218)
T 2z7f_E 80 YDPVNLLNDIVILQLNGSATIN-ANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCR---RS 155 (218)
T ss_dssp CBTTTTBSCCEEEEESSCCCCS-SSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEECTTCC---TT
T ss_pred CCCCCCCCCEEEEEECCcCcCC-CceeccCcCCCCCCCCCCCEEEEEEeCCCCCCCCccchheEeeeEEehhHcC---cc
Confidence 33699999997532 11 123444443 33457899999999864322 1122222222211100 00
Q ss_pred CcccccceEEEE-----eeecCCCCCCCceecccCcEEEEeec
Q 001280 182 GYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAG 219 (1108)
Q Consensus 182 ~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~ 219 (1108)
++-+ ....-.|.|||||+- +|.++||.+.
T Consensus 156 --------~~Ca~~~~~~~~~C~GDSGgPl~~-~~~l~Gi~S~ 189 (218)
T 2z7f_E 156 --------NVCTLVRGRQAGVCFGDSGSPLVC-NGLIHGIASF 189 (218)
T ss_dssp --------SEEEECTTSCCBCCTTCTTCEEEE-TTEEEEEEEE
T ss_pred --------eeeeccCCCCCeeCCCcCCCceEE-ccEEEEEEEe
Confidence 1111 123457999999995 6799999987
No 204
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.38 E-value=4.1e-07 Score=82.43 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=51.2
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
+++|..|.++|||+++| |++||.|++|||+++ .+++++.+.++..+.+..++|. +.|.
T Consensus 28 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~-v~R~ 88 (90)
T 2q9v_A 28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLT-VRQT 88 (90)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEE-EEEC
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEec
Confidence 68999999999999999 999999999999999 6689999999986545588888 5554
No 205
>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...
Probab=98.38 E-value=2.2e-06 Score=91.23 Aligned_cols=165 Identities=14% Similarity=0.184 Sum_probs=95.6
Q ss_pred ccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC-------CceEEEEECCCCcc
Q 001280 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV-------HDFGFFRYDPSAIQ 130 (1108)
Q Consensus 67 ~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~-------~DlAlLk~d~~~~~ 130 (1108)
...++|.+|+++ +|||+||++.. . ..+.+. +...+.++-+..||. +|||||+++..-.-
T Consensus 22 ~~~C~GtLI~~~--~VLTAAhC~~~-~--~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIAll~L~~~~~~ 96 (223)
T 4i8h_A 22 YHFCGGSLINSQ--WVVSAAHCYKS-G--IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASL 96 (223)
T ss_dssp SEEEEEEECSSS--EEEECGGGCCS-S--CEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCC
T ss_pred CcEEEEEEEcCC--EEEecHHhCCC-C--cEEEEccccccccCCCcEEEEEeEEEECcCCCCCCCcCCEEEEEECCcCcC
Confidence 356999999965 99999999984 2 333332 234566777777774 69999999753211
Q ss_pred cccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCcccccceEEEE-----eeec
Q 001280 131 FLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQA-----ASGT 197 (1108)
Q Consensus 131 ~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~~~~~~~~~~i~~-----~a~~ 197 (1108)
...+.++.|.......|+.+.+.|+..... .......+..+... ...|.. ...+ .++-+ ....
T Consensus 97 ~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~ 172 (223)
T 4i8h_A 97 NSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG-QITS---NMFCAGYLEGGKDS 172 (223)
T ss_dssp BTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-TCCT---TEEEESCTTSSCBC
T ss_pred CCceeceECCCCCCCCCCEEEEEecccccCCCCCccccceEEEeeecCHHHHHHhhCC-CCCC---CeEeccCCCCCCcc
Confidence 123556666666678999999999864322 11222222211110 000111 0111 11221 1234
Q ss_pred CCCCCCCceecccCcEEEEeecccCC---CCcccccChHHHHHHHHH
Q 001280 198 KGGSSGSPVIDWQGRAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 198 ~~G~SGgPv~n~~G~vVGi~~~~~~~---~~~~falPi~~i~~~l~~ 241 (1108)
-.|.|||||+- +++++||.+.+..- ...+.+..+...+..+++
T Consensus 173 C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~ 218 (223)
T 4i8h_A 173 CQGDSGGPVVC-SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218 (223)
T ss_dssp CTTCTTCEEEE-TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred CCCCCCCcEEE-CCEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 56999999996 56999999876432 123445555555555544
No 206
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.37 E-value=1.1e-06 Score=79.80 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGISM 358 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~ 358 (1108)
..|++| ..|.++|||++ ||++||+|++|||+.+.++ .++..++.. .++.+.|+|.|++...
T Consensus 23 ~~~~~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 86 (91)
T 2f5y_A 23 DSPVRV-QAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMVPQV 86 (91)
T ss_dssp SSSCEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC---
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCCC
Confidence 356666 79999999999 9999999999999999965 666666644 4678999999987653
No 207
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.37 E-value=3.3e-07 Score=83.87 Aligned_cols=60 Identities=23% Similarity=0.460 Sum_probs=52.1
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.... +.+.|+|.|+|+.
T Consensus 29 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 29 HTPIIV-TKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSGP 91 (94)
T ss_dssp TEEEEC-CCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred CCCeEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCcC
Confidence 356666 79999999999 9999999999999999998 88887776544 8899999999864
No 208
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.37 E-value=8.2e-07 Score=81.29 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=48.5
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHH--HHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLE--TLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~--~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+++.++.+.+ ..+. ..|+.+.|+|.|+++
T Consensus 28 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 28 EPGVFI-LDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ-ASGERVNLTIARPGK 90 (95)
T ss_dssp SCSEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEEEESC
T ss_pred CCCEEE-EEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCc
Confidence 457777 79999999999 9 9999999999999998754433 3333 458999999999775
No 209
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.37 E-value=6.4e-07 Score=82.40 Aligned_cols=52 Identities=31% Similarity=0.475 Sum_probs=48.1
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVR 1061 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~ 1061 (1108)
+++|++|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. ++.++|+
T Consensus 37 gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~--~~~v~L~ 91 (97)
T 2ejy_A 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET--KGMISLK 91 (97)
T ss_dssp CEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC--CEEEEEE
T ss_pred CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE
Confidence 88999999999999999 99999999999999996 99999999974 5678777
No 210
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.37 E-value=2.7e-07 Score=85.66 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=51.9
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++||++||.|++|||+++.++++ .+++..+..++.+.|+ +.|+|+
T Consensus 35 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~-~~~~~~~~~~~~v~l~-v~R~g~ 94 (101)
T 1uez_A 35 VGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTH-AEAVKALKGSKKLVLS-VYSAGR 94 (101)
T ss_dssp CCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCH-HHHHHHSSSSSSCCEE-ECCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCH-HHHHHhhcCCCeEEEE-EEECCc
Confidence 38999999999999999999999999999999999988 4566665567788888 677775
No 211
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.37 E-value=5.6e-07 Score=82.36 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=50.2
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++||++||.|++|||+++.++ +++...++. . +..+.+.++.+++.
T Consensus 30 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~-~~~~~~~~~r~~~~ 90 (95)
T 3r68_A 30 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-G-GDQTTLLVLDKELE 90 (95)
T ss_dssp SEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-T-TTEEEEEEEECC--
T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-C-CCeEEEEEECCccc
Confidence 78999999999999999999999999999999999 999999997 3 55666664555543
No 212
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.37 E-value=6.9e-07 Score=83.76 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=52.9
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||+.||++||+|++|||+++.++.++..++ ....|+.+.|+|.|+|+.
T Consensus 38 ~~gv~V-~~V~~~spA~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 99 (107)
T 2h2b_A 38 ETSIVI-SDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99 (107)
T ss_dssp CCCEEE-EEECTTSTTBTTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred CCCEEE-EEECCCCchhhCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence 467777 7999999999899999999999999999998887665 346789999999998763
No 213
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.36 E-value=5.1e-07 Score=84.23 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=52.2
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.++++. ++.++|+ +.|+..
T Consensus 41 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~---~~~v~l~-v~r~~~ 100 (104)
T 1wi2_A 41 LGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT---AREISMR-VRFFSG 100 (104)
T ss_dssp CCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH---SSSEEEE-EECCCC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC---CCEEEEE-EEECCC
Confidence 37899999999999999999999999999999999 9999999997 6778888 666654
No 214
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.36 E-value=5.6e-07 Score=81.35 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=48.7
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.. .|+.+.|+|.|+++
T Consensus 26 ~~~v~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 26 NVPLSI-SRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRA-CGERLSLGLSRAIT 87 (89)
T ss_dssp TEEEEE-EEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHT-CTTEEEEEEEEECC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEEEEEEeCCC
Confidence 356666 79999999999 9999999999999999965 555555544 48899999999875
No 215
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.36 E-value=3.9e-07 Score=87.89 Aligned_cols=58 Identities=10% Similarity=0.206 Sum_probs=54.1
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
+++|..|.++|||+++| |++||.|++|||+++. +++++.++++..+.|+.++|+ +.|+
T Consensus 50 ~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~-V~R~ 110 (126)
T 1wif_A 50 YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK-AYRG 110 (126)
T ss_dssp EEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEE-EESS
T ss_pred cEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEE-EEEC
Confidence 68999999999999999 9999999999999995 899999999987779999999 6776
No 216
>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Probab=98.36 E-value=5.2e-06 Score=88.78 Aligned_cols=166 Identities=13% Similarity=0.179 Sum_probs=95.1
Q ss_pred ccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcCC-------CceEEEEECCCC-c
Q 001280 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV-------HDFGFFRYDPSA-I 129 (1108)
Q Consensus 67 ~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~~-------~DlAlLk~d~~~-~ 129 (1108)
...++|.+|+++ +|||+|||+.. ...+.|.+.. ...+.++-+..||. +||||||++..- +
T Consensus 24 ~~~CgGtLI~~~--~VLTAAHC~~~-~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~ 100 (228)
T 1fxy_A 24 EGFCGGTILSEF--YILTAAHCLYQ-AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITF 100 (228)
T ss_dssp CEEEEEEECSSS--EEEECGGGTTS-CSSCEEEEECSCTTTCCCCEEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCC
T ss_pred CeeEEEEEeeCC--EEEECHHHCCC-CCcEEEEECccCccccCCCcEEEEEEEEEECCCCCCCCCcCcEEEEEECCcccC
Confidence 457999999965 99999999963 3344555432 23456666677764 699999997532 2
Q ss_pred ccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCcccccceEEEE-----eee
Q 001280 130 QFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQA-----ASG 196 (1108)
Q Consensus 130 ~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~~~~~~~~~~i~~-----~a~ 196 (1108)
. ..+.++.|.......|+.+.+.|+..... .......+..+... ...|.. ...+ .++-+ ...
T Consensus 101 ~-~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~ 175 (228)
T 1fxy_A 101 R-MNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG-KITS---NMFCVGFLEGGKD 175 (228)
T ss_dssp B-TTBCCCCCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-TCCT---TEEEESCTTCSCB
T ss_pred C-CceeccCCCCCCCCCCCEEEEEecCccCCCCCCCCccceEEEEEEeCHHHhHhhcCC-CCCC---CEEEeccCCCCCc
Confidence 1 13455666666677999999999864321 11222222222110 000110 0111 12222 123
Q ss_pred cCCCCCCCceecccCcEEEEeecccCC---CCcccccChHHHHHHHHH
Q 001280 197 TKGGSSGSPVIDWQGRAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 197 ~~~G~SGgPv~n~~G~vVGi~~~~~~~---~~~~falPi~~i~~~l~~ 241 (1108)
.-.|.|||||+- +|+++||.+.+..- ..-+.+.-+...+..+++
T Consensus 176 ~C~GDSGgPL~~-~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~ 222 (228)
T 1fxy_A 176 SCQGDSGGPVVC-NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKN 222 (228)
T ss_dssp CCTTCTTCEEEE-TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHH
T ss_pred cccCccccceEE-CCEEEEEEEECCCCCCCCCCEEEEEhHHHHHHHHH
Confidence 567999999995 57999999876421 122344444444444443
No 217
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=98.36 E-value=1.2e-06 Score=80.67 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=50.8
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++. ..|+.+.|+|.|+++.
T Consensus 30 ~~~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~~ 92 (97)
T 1n7e_A 30 DPIII-SSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTDA 92 (97)
T ss_dssp SCCEE-EEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCCC
T ss_pred CCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCCC
Confidence 56676 79999999999 9 99999999999999975 567776666 5789999999998864
No 218
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.35 E-value=8.3e-07 Score=80.52 Aligned_cols=60 Identities=27% Similarity=0.363 Sum_probs=50.4
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++..+ ++ +.+.++.|+++
T Consensus 27 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~-~~~~~~~r~~~ 88 (91)
T 1g9o_A 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL-NA-VRLLVVDPETD 88 (91)
T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SE-EEEEEECCCCS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-Cc-EEEEEEcCCcc
Confidence 38999999999999999999999999999999998 789999998743 55 44444677664
No 219
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.35 E-value=2.6e-07 Score=89.62 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=61.7
Q ss_pred eEEEEEecCCChhhhcCC-CCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEe
Q 001280 1008 GVYVARWCHGSPVHRYGL-YALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1076 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL-~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~ 1076 (1108)
+++|..|.++|||+++|| ++||.|++|||+++.+ ++++.+.++.. .++.+.|. +.|+|+.+.+++++
T Consensus 34 ~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~g~~v~l~-v~R~g~~~~~~~~~ 103 (127)
T 1b8q_A 34 PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI-ASETHVVL-ILRGPEGFTTHLET 103 (127)
T ss_dssp CEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSC-CSSCEEEE-EECCCCSEEECCCC
T ss_pred CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCCeEEEE-EEeCCceEEEEEEE
Confidence 789999999999999999 9999999999999999 99999999985 58899999 89999988877765
No 220
>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*
Probab=98.35 E-value=1.3e-05 Score=85.42 Aligned_cols=177 Identities=19% Similarity=0.229 Sum_probs=99.2
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|.|.... ......++|.+|+++ +|||+|||+.. . ..+++. ..+.+.++-+..||.
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGsLI~~~--~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (224)
T 1cgh_A 12 RPYMAYLQIQS-------PAGQSRCGGFLVRED--FVLTAAHCWGS-N--INVTLGAHNIQRRENTQQHITARRAIRHPQ 79 (224)
T ss_dssp STTEEEEEEST-------TTTSCEEEEEEEETT--EEEECGGGCCS-S--EEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCcEEEEEEEC-------CCCCeEEEEEEeeCC--EEEEhHHhCCC-C--CEEEEeecccCCCCCccEEEEEEEEEcCCC
Confidence 36677776531 112467999999965 99999999984 2 444442 135667777777775
Q ss_pred -------CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CCCCCC
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--APHYKK 180 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~~G~is~~~~~--~~~~~~ 180 (1108)
+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+... ...|+.
T Consensus 80 y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~ 158 (224)
T 1cgh_A 80 YNQRTIQNDIMLLQLSRRVRRN-RNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGS 158 (224)
T ss_dssp CBTTTTBSCCEEEEESSCCCCB-TTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCCSBCEEEEEEBCCHHHHHHHCTT
T ss_pred CCCCCCcCCEEEEEECCCCcCC-CceEeeECCCCCCCCCCCCEEEEEECCcCCCCCCCCcceEEEEEeeCHHHHHHHhCc
Confidence 599999997532 11 123444443 33457899999999864321 12222222211110 000111
Q ss_pred CCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecccCC-CCcccccChHHHHHHHH
Q 001280 181 DGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALR 240 (1108)
Q Consensus 181 ~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falPi~~i~~~l~ 240 (1108)
+.. ...|-+. ...-.|.|||||+- +|.++||.+.+... ..-+.+.-+...+..++
T Consensus 159 --~~~--~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~~~~p~vyt~V~~~~~WI~ 219 (224)
T 1cgh_A 159 --YDP--RRQICVGDRRERKAAFKGDSGGPLLC-NNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIR 219 (224)
T ss_dssp --CCT--TTEEEECCTTSCCBCCTTCTTCEEEE-TTEEEEEEEECCTTCCSCEEEEEGGGGHHHHH
T ss_pred --CCC--cceEeeccCCCCCeEeeCCCccceEE-ccEEEEEEEEECCCCCCCeEEEEHHHhHHHHH
Confidence 100 0022221 23456999999996 57999999876522 12233444444444443
No 221
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.35 E-value=1.2e-06 Score=82.09 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=51.9
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|.+|.++|||+++| |++||.|++|||+++.+ ++++...++. .+..++|+ +.|++.
T Consensus 32 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~ 93 (106)
T 4amh_A 32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN--TSDFVYLK-VAKPGS 93 (106)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS--CCSEEEEE-EECCSS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEE-EEeCCC
Confidence 489999999999999999 99999999999999955 7888888886 36689998 788774
No 222
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.35 E-value=2.8e-07 Score=85.84 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=53.6
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++..+.++.++|+ +.|++.
T Consensus 34 ~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~~ 97 (103)
T 1uep_A 34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLT-VRRKVL 97 (103)
T ss_dssp SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEE-EEEECC
T ss_pred CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEE-EEeCCC
Confidence 378999999999999999 99999999999999965 89999999875447889998 677664
No 223
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Probab=98.35 E-value=4e-05 Score=82.52 Aligned_cols=184 Identities=15% Similarity=0.143 Sum_probs=104.2
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-CeEEEEEecC-----------CeEEeEEEEEE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN-----------REEIPVYPIYR 113 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~~v~~~d-----------~~~~~a~vv~~ 113 (1108)
.|-+|+|... ....++|.+|+++ +|||+|||+... ...+.+.+.. ...+...-+.+
T Consensus 11 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~ 78 (240)
T 1si5_H 11 IGWMVSLRYR----------NKHICGGSLIKES--WVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVY 78 (240)
T ss_dssp CTTEEEEEES----------SSEEEEEEEEETT--EEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEE
T ss_pred CCeEEEEEeC----------CCeEEEEEEeeCC--EEEEhHHhcCCCCCccEEEEEeeeecCCCCCCCcceEEEEEEEEc
Confidence 3667888652 2467999999965 999999999743 2345565531 23455555556
Q ss_pred cC-CCceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CCCCCCC-C
Q 001280 114 DP-VHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--APHYKKD-G 182 (1108)
Q Consensus 114 d~-~~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~~G~is~~~~~--~~~~~~~-~ 182 (1108)
+| .+|||||+++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+... ...|+.. .
T Consensus 79 ~p~~~DiALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~ 157 (240)
T 1si5_H 79 GPEGSDLVLMKLARPAVLD-DFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVT 157 (240)
T ss_dssp CSSTTCEEEEEESSCCCCS-SSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSSCCCBCEEEEEEEECGGGTCC-------
T ss_pred CCCCCcEEEEEECCccccC-CceeccCcCCcCCCCCCCCEEEEEEeCCCCCCCCCCeeEEEEEeecCHHHhhhhhcCCcc
Confidence 66 6899999997532 21 123344443 24467899999999864322 12222233333221 1111110 0
Q ss_pred cccccceEEEE-----eeecCCCCCCCceecccC---cEEEEeecccCC---CCcccccChHHHHHHHHHHHhc
Q 001280 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQG---RAVALNAGSKSS---SASAFFLPLERVVRALRFLQER 245 (1108)
Q Consensus 183 ~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G---~vVGi~~~~~~~---~~~~falPi~~i~~~l~~l~~~ 245 (1108)
..+ ..|=+ ....-.|.|||||+-..+ .++||.+.+..- ...+.+..+...+..+++..+.
T Consensus 158 ~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~ 228 (240)
T 1si5_H 158 LNE---SEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILT 228 (240)
T ss_dssp CCT---TEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSS
T ss_pred CCC---CEEeecCCCCCCEeccCCCCCcEEEEECCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHhc
Confidence 111 12222 123456999999985433 799999876421 2234456666666666655443
No 224
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Probab=98.35 E-value=1.5e-05 Score=85.23 Aligned_cols=183 Identities=15% Similarity=0.110 Sum_probs=102.3
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC------CeEEeEEEEEEcCC---
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN------REEIPVYPIYRDPV--- 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d------~~~~~a~vv~~d~~--- 116 (1108)
.|-+|.|..... ......++|.+|+++ +|||+||++. +...+.+.+.. ...+..+-+..||.
T Consensus 12 ~Pw~v~l~~~~~------~~~~~~CgGtLIs~~--~VLTAAHC~~-~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~ 82 (230)
T 2hlc_A 12 FPYQAGLDITLQ------DQRRVWCGGSLIDNK--WILTAAHCVH-DAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNP 82 (230)
T ss_dssp STTEEEEEEEET------TSCEEEEEEEEEETT--EEEECHHHHT-TEEEEEEEESCSBTTCCSEEEECSEEEECTTCBT
T ss_pred CCcEEEEEEEec------CCCCEEEEEEEeeCC--EEEECHHHCC-CCcceEEEEeeeecCCCCeEEEEEEEEECCCCCC
Confidence 467788876421 123467999999965 9999999998 45556666643 24455555666654
Q ss_pred ----CceEEEEECCCCcccccccCCCCCCc----ccCCCCEEEEEecCCCCC--CeEEEEEEEEecC--CCCCCCCCCcc
Q 001280 117 ----HDFGFFRYDPSAIQFLNYDEIPLAPE----AACVGLEIRVVGNDSGEK--VSILAGTLARLDR--DAPHYKKDGYN 184 (1108)
Q Consensus 117 ----~DlAlLk~d~~~~~~~~~~~l~l~~~----~~~~G~~V~~iG~p~g~~--~si~~G~is~~~~--~~~~~~~~~~~ 184 (1108)
+||||||+++-.+. ..+.++.|... ....|+.+.+.|+..... .......+..+.. -...|......
T Consensus 83 ~~~~~DiALl~L~~~~~~-~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~ 161 (230)
T 2hlc_A 83 DTYLNDVALIKIPHVEYT-DNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIV 161 (230)
T ss_dssp TTTBTCCEEEECSCCCCC-SSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCCCBCEEEEEEEECHHHHHTTSCTTSSC
T ss_pred CCccccEEEEEecCCCcC-CcEeeeEcCCccccccccCCcEEEEEeeeecCCCCceeEEEEEEEeCHHHhhhhhCCCccc
Confidence 69999999832221 13445555432 245799999999865432 1222222222221 00112111111
Q ss_pred cccceEEEEe----eecCCCCCCCceec-ccCcEEEEeecccC-C---CCcccccChHHHHHHHHH
Q 001280 185 DFNTFYMQAA----SGTKGGSSGSPVID-WQGRAVALNAGSKS-S---SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 185 ~~~~~~i~~~----a~~~~G~SGgPv~n-~~G~vVGi~~~~~~-~---~~~~falPi~~i~~~l~~ 241 (1108)
+ ..+-+. ...-.|.|||||+- .++.++||.+.+.. . ...+.+..+...+..+++
T Consensus 162 ~---~~~Ca~~~~~~~~C~GDSGgPl~~~~~~~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~ 224 (230)
T 2hlc_A 162 E---STICGDTSDGKSPCFGDSGGPFVLSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQ 224 (230)
T ss_dssp T---TEEEECCTTSCBCCTTCTTCEEEEGGGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHH
T ss_pred C---CeEEecCCCCCCcCCCCCCCeeEECcCCEEEEEEEEeCCCCCCCCCCCEEEEhHHhHHHHHH
Confidence 1 112221 23557999999984 45699999987541 1 122333444445555443
No 225
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.35 E-value=8.7e-07 Score=80.01 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=50.6
Q ss_pred CceEEEEEecCCCcccc--CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.+++| ..|.++|||++ ||++||+|++|||+.+. ++.++..++....+ .+.|+|.|.++
T Consensus 25 ~~~~I-~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 86 (88)
T 1kwa_A 25 NHCIV-ARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSYR 86 (88)
T ss_dssp GGEEE-EEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence 34555 79999999998 69999999999999999 89999999977666 89999999765
No 226
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.35 E-value=2.9e-07 Score=85.73 Aligned_cols=59 Identities=22% Similarity=0.388 Sum_probs=52.9
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
.+++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++... ++.+.|+|.|+++.
T Consensus 29 ~~~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~ 90 (103)
T 1v5l_A 29 QPLVI-TRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAETR 90 (103)
T ss_dssp EEEEC-SCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTTT
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCeE
Confidence 35565 79999999999 999999999999999999 99999888766 89999999998874
No 227
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.35 E-value=1.4e-06 Score=78.93 Aligned_cols=58 Identities=29% Similarity=0.442 Sum_probs=48.0
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEEC
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERG 354 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~V~R~ 354 (1108)
..|++| ..|.++|||++ ||++||+|++|||+.+.++.+..... ....|+.+.|+|.|+
T Consensus 31 ~~gv~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 31 EKGVYV-KNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90 (91)
T ss_dssp SSCEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence 367777 79999999999 99999999999999999986554322 335688999999986
No 228
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.35 E-value=9.7e-07 Score=81.95 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=53.7
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++. .++.++|. +.|++.+
T Consensus 34 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~~ 96 (102)
T 2i1n_A 34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE--AGPVVRLV-VRRRQPP 96 (102)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH--SCSEEEEE-EEEECCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCCC
Confidence 489999999999999999 99999999999999977 7888888887 37889998 7787764
No 229
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Probab=98.34 E-value=1.3e-05 Score=86.08 Aligned_cols=158 Identities=18% Similarity=0.233 Sum_probs=92.4
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~~ 116 (1108)
.|-+|.|... ....++|.+|+++ +|||+|||+.... ..+.+.. .+.+..+-+..||.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~--~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~ 77 (234)
T 1orf_A 12 RPYMVLLSLD----------RKTICAGALIAKD--WVLTAAHCNLNKR--SQVILGAHSITREEPTKQIMLVKKEFPYPC 77 (234)
T ss_dssp STTEEEEECS----------SSCEEEEEEEETT--EEEECTTCCCCTT--CEEEESCSBSSSCCTTCEEECEEEEEECTT
T ss_pred CCeEEEEccC----------CceEEEEEEeeCC--EEEEchhcCCCCC--ceEEEeccccCcCCCceEEEEEEEEEcCCC
Confidence 4667777642 2467999999965 9999999997533 3344321 35667777777764
Q ss_pred -------CceEEEEECCCCcccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CC-CCC
Q 001280 117 -------HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DA-PHY 178 (1108)
Q Consensus 117 -------~DlAlLk~d~~~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~---~~-~~~ 178 (1108)
+||||||++........+.++.|. ...+..|+.+.+.|+..... .......+..+.. .. ..|
T Consensus 78 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~ 157 (234)
T 1orf_A 78 YDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHY 157 (234)
T ss_dssp CCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTT
T ss_pred CCCCCCCCCEEEEEECCcCccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCCCccccceEeEEEeeCHHHcCCcccc
Confidence 699999997532111123344443 33457899999999864321 1222323333322 10 112
Q ss_pred CCCCcccc-cceEEEEe-----eecCCCCCCCceecccCcEEEEeeccc
Q 001280 179 KKDGYNDF-NTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1108)
Q Consensus 179 ~~~~~~~~-~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1108)
. +.++ ...+|-+. ...-.|.|||||+- +|.++||.+.+.
T Consensus 158 ~---~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~ 202 (234)
T 1orf_A 158 N---FNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLC-EGVFRGVTSFGL 202 (234)
T ss_dssp T---TTTCCCTTEEEEECSSCCCBCCTTCTTCEEEE-TTEEEEEEEECC
T ss_pred c---cCCccCCCEEEecCCCCCCcCCCCCCCCeEEE-CCEEEEEEEEcC
Confidence 1 1110 00122221 23456999999996 679999998764
No 230
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.34 E-value=3.7e-08 Score=95.69 Aligned_cols=68 Identities=21% Similarity=0.167 Sum_probs=60.7
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeEEE--EEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRV--LTLKQD 1077 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~--~~lk~d 1077 (1108)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.++++.. .++.+.|. +.|+|+.+. +++++.
T Consensus 34 gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~~~~l~-v~R~g~~~~~~~~l~~~ 105 (128)
T 2kjd_A 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLV-VDRETDEFFKKCRVIPS 105 (128)
T ss_dssp SEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTT-CSEEEEEE-ECHHHHHHHHHHTCCCC
T ss_pred CEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCCEEEEE-EEeCCcceEEEEEEEec
Confidence 7999999999999999999999999999999999 99999999987 58888888 789988766 555554
No 231
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=98.34 E-value=6e-07 Score=84.34 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=53.8
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++. .++.++|. +.|+++.
T Consensus 44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~~ 106 (108)
T 2jre_A 44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN--AGNPVRLL-LIRRLPL 106 (108)
T ss_dssp CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH--HCSEEEEE-EEECCCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcC
Confidence 388999999999999999 99999999999999998 6899999987 47889998 6787754
No 232
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.34 E-value=9.6e-07 Score=82.37 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=51.0
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.+++||++ ||++||+|++|||+.+.+ +.++..++.. ++.+.|+|.|+..
T Consensus 40 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~~ 100 (104)
T 1wi2_A 40 QLGIFI-SKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFSG 100 (104)
T ss_dssp CCCCEE-EEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCCC
T ss_pred CCCEEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECCC
Confidence 467777 69999999999 999999999999999999 8888888865 7889999998654
No 233
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.34 E-value=5.7e-07 Score=83.03 Aligned_cols=57 Identities=28% Similarity=0.323 Sum_probs=50.2
Q ss_pred ceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 298 GLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 298 G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
|++| ..|.++|||++ ||++||+|++|||+.+. ++.++..++. ..|+.+.|+|.|+++
T Consensus 35 g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 94 (99)
T 3khf_A 35 HHVV-WSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALEN 94 (99)
T ss_dssp EEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred CeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence 5566 69999999999 99999999999999999 7777777776 578999999999775
No 234
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.34 E-value=8.3e-07 Score=86.51 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=75.5
Q ss_pred CeEEEEEEeCCEEEEEEEeecccCCC-C-CcceeeeccccccCCchhhhhcCCCCCCCCeEEEEEecCCChhhhcC-CCC
Q 001280 951 GKLDITIFRQGREIELQVGTDVRDGN-G-TTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYA 1027 (1108)
Q Consensus 951 ~~v~l~V~R~g~~~~v~v~~~~~~~~-~-t~~~~~~~G~~~~~p~~~vr~~~~lp~~~~gV~V~~v~~gSpA~~~G-L~~ 1027 (1108)
..+.....++++.+...+.+...... . ....-..+||.+..-. ..+....++||..|.++|||+++| |++
T Consensus 14 ~p~~~~~~~~~~~~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~-------~~~~~~~gv~V~~V~~gspA~~aG~L~~ 86 (131)
T 1wfg_A 14 HPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGK-------MTESGRLCAFITKVKKGSLADTVGHLRP 86 (131)
T ss_dssp CSCEEEECSSSSEEEEEEEEECSCTTSCCCSCSCTTTTEEEEEEE-------ECSSSCEEEEEEEECTTSHHHHTSCCCT
T ss_pred CCCcccCCCCCCceeeEEEEeccceeEEEecCCCCCCCEEEecCc-------cCCCCCCCEEEEEECCCChHHHcCCCCC
Confidence 45667777777776666655543110 0 0111223455553100 011112389999999999999999 999
Q ss_pred CCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1028 LQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1028 gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
||.|++|||+++.+ ++++.++++....++.++|. +.|++.
T Consensus 87 GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g~ 128 (131)
T 1wfg_A 87 GDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELV-VSRSGP 128 (131)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEE-EEEECS
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE-EEcCCC
Confidence 99999999999975 59999999997668999998 677653
No 235
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.34 E-value=6.2e-07 Score=84.07 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1006 GHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1006 ~~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
..+++|..|.++|||+ +||++||.|++|||+++.+++++..++...+.++.++|. +.|+|+.
T Consensus 38 ~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~-v~R~~~~ 99 (107)
T 2h2b_A 38 ETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKIT-IRRKKGG 99 (107)
T ss_dssp CCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE-EEEESCC
T ss_pred CCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEE-EEECCCC
Confidence 3589999999999999 999999999999999999998887776655568899998 6777754
No 236
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=98.34 E-value=1e-06 Score=81.04 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=53.0
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++. .++.++|. +.|+++.
T Consensus 30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~~ 92 (97)
T 1n7e_A 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM--AGETVTLK-IKKQTDA 92 (97)
T ss_dssp SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHT--CCSEEEEE-EECCCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCCC
Confidence 378999999999999999 99999999999999975 6899999983 58889998 6787764
No 237
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Probab=98.33 E-value=1.2e-05 Score=85.76 Aligned_cols=175 Identities=16% Similarity=0.207 Sum_probs=100.4
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec----------CCeEEeEEEEEEcC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV----------NREEIPVYPIYRDP 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~----------d~~~~~a~vv~~d~ 115 (1108)
.|-+|+|... ....++|.+|+++ +|||+||++.+ . ..+.+. +.+.+.+.-+..||
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGsLIs~~--~VLTAAHC~~~-~--~~v~~g~~~~~~~~~~~~~~~~v~~~~~Hp 76 (223)
T 2bdg_A 12 QPWQAALVME----------NELFCSGVLVHPQ--WVLSAAHCFQN-S--YTIGLGLHSLEADQEPGSQMVEASLSVRHP 76 (223)
T ss_dssp STTEEEEECS----------SCEEEEEEEEETT--EEEECGGGCCS-S--EEEEESCSBSCGGGCTTCEEEEEEEEEECT
T ss_pred CCcEEEEeeC----------CCEEEEEEEecCC--EEEEhHHhCCC-C--eEEEEeeeecCCCCCCCcEEEEEEEEEeCC
Confidence 3566777541 2467999999965 99999999974 2 333332 23456666667776
Q ss_pred C-------CceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CCCCCCCC
Q 001280 116 V-------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--APHYKKDG 182 (1108)
Q Consensus 116 ~-------~DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~----~si~~G~is~~~~~--~~~~~~~~ 182 (1108)
. +||||||++..-.....+.++.|....+..|+.+.+.|+..... .......+..+... ...|.. .
T Consensus 77 ~y~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~ 155 (223)
T 2bdg_A 77 EYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDP-L 155 (223)
T ss_dssp TTTSSTTCSCCEEEEESSCCCCCSSCCCCCBCSSCCCTTCEEEEEESCCCTTSCCCSBCEEEEEEBCCHHHHHHHSTT-T
T ss_pred CCCCCCCcCcEEEEEECCcccCCCceecccCCCCCCCCCCEEEEEeCcccCCCCCCCcceEEEEEEeCHHHhhhhhCC-C
Confidence 5 59999999754211113455666666678899999999864322 11222222222110 000111 0
Q ss_pred cccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHH
Q 001280 183 YNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALR 240 (1108)
Q Consensus 183 ~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~ 240 (1108)
+.+ .+|-+. ...-.|.|||||+- +|.++||.+.+... ...+.+.-+...+..++
T Consensus 156 ~~~---~~~Ca~~~~~~~~~C~GDsGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~ 218 (223)
T 2bdg_A 156 YHP---SMFCAGGGQDQKDSCNGDSGGPLIC-NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIE 218 (223)
T ss_dssp CCT---TEEEECCSTTCCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGTHHHHH
T ss_pred CCC---CeEeccCCCCCCCcCCCCCCchheE-ccEEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHH
Confidence 111 122221 23457999999996 57999999876421 22344455554444444
No 238
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.33 E-value=8.1e-07 Score=80.62 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=47.9
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHH--HHHHHHHcCCCCceEEEEEEEeC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLE--AFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~--~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
.|++|..|.++|||+++||++||.|++|||+++.+++ ++...++. .++.+.|. +.|+
T Consensus 32 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~ 90 (91)
T 1m5z_A 32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE--SGNKLDLV-ISRN 90 (91)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT--STTEEEEE-EEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEeC
Confidence 3899999999999999999999999999999999974 45555664 47888888 5664
No 239
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A
Probab=98.33 E-value=1.3e-05 Score=85.47 Aligned_cols=181 Identities=16% Similarity=0.186 Sum_probs=100.8
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|.|.... .......++|.+|+++ +|||+|||+. ....+.+. ..+.+.++-+..||.
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLI~~~--~VLTAAHC~~---~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 80 (227)
T 3fzz_A 12 RPYMAYYEFLK------VGGKKMFCGGFLVRDK--FVLTAAHCKG---RSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 80 (227)
T ss_dssp STTEEEEEEEC------SSSCEEEEEEEEEETT--EEEECTTCCC---EEEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred cCCEEEEEEEe------CCCceeEEEEEEEeCC--EEEECcccCC---CCcEEEEcccccCCCCCCceEEEEEEEEECcC
Confidence 46678887642 1122467999999965 9999999986 24555553 234567777777776
Q ss_pred -------CceEEEEECCCCcccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCC
Q 001280 117 -------HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKK 180 (1108)
Q Consensus 117 -------~DlAlLk~d~~~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~~~~ 180 (1108)
+|||||+++..-.....+.++.|. ...+..|+.+.+.|+..... .......+...... ...|..
T Consensus 81 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 160 (227)
T 3fzz_A 81 YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQS 160 (227)
T ss_dssp CBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSTTSCCCSBCEEEEEEBCCHHHHHHHHTT
T ss_pred CCCCCCcCCEEEEEECCcCCCCCcccccCCCCcccCCCCCCEEEEEECCcccCCCCCCCeeeEEEeeeecHHHhhhhhcc
Confidence 599999997532111123344443 34457899999999864211 11222222221110 000000
Q ss_pred CCcccccceEEEE-----eeecCCCCCCCceecccCcEEEEeecccCC-CCcccccChHHHHHHHHH
Q 001280 181 DGYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 181 ~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falPi~~i~~~l~~ 241 (1108)
.+.. ...+-+ ....-.|.|||||+- ++.++||.+.+... ..-+.+..+...+..+++
T Consensus 161 -~~~~--~~~~Ca~~~~~~~~~C~gDsGgPl~~-~~~l~Gi~S~g~~c~~~p~vyt~V~~~~~WI~~ 223 (227)
T 3fzz_A 161 -SYNR--ANEICVGDSKIKGASFEEDSGGPLVC-KRAAAGIVSYGQTDGSAPQVFTRVLSFVSWIKK 223 (227)
T ss_dssp -TCCT--TTEEEECCCSSCBCCTTTTTTCEEEE-TTEEEEEEEECCTTCSSSEEEEEGGGTHHHHHH
T ss_pred -ccCC--CceEEEeCCCCCCcccccCCccceEE-ecCCcEEEEECCCCCCCCeEEEEhHHhHHHHHH
Confidence 0000 011211 123456899999996 46999999876532 123444444444444443
No 240
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.33 E-value=1.2e-06 Score=79.59 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=50.0
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++.. +..+.|. +.|++.
T Consensus 25 ~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~~~ 84 (91)
T 2f5y_A 25 PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC--PSEIILL-VWRMVP 84 (91)
T ss_dssp SCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTC--SSEEEEE-EEECC-
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEeCCC
Confidence 6799999999999999999999999999999995 58899988862 5578888 677664
No 241
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B
Probab=98.33 E-value=1.2e-05 Score=86.88 Aligned_cols=183 Identities=15% Similarity=0.173 Sum_probs=104.6
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCC---------------CCeEEEEEec---------
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKP---------------GPVVAEAMFV--------- 101 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~---------------~~~~~~v~~~--------- 101 (1108)
.|-+|.|... .....++|.+|+++ +|||+|||+.. ....+.+.+.
T Consensus 12 ~Pw~v~l~~~---------~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~ 80 (251)
T 3gov_B 12 TPWIAMLSHL---------NGQPFCGGSLLGSS--WIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDE 80 (251)
T ss_dssp CTTEEEEEET---------TCCEEEEEEEETTT--EEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCCS
T ss_pred cCeEEEEecc---------CCCeeEEEEEecCC--EEEECHhhccccccccccccccccccccccEEEEecceeccCCCC
Confidence 4567777642 12457999999965 99999999963 2334556543
Q ss_pred CCeEEeEEEEEEcCC-------CceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC----CeEEEEEEEE
Q 001280 102 NREEIPVYPIYRDPV-------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK----VSILAGTLAR 170 (1108)
Q Consensus 102 d~~~~~a~vv~~d~~-------~DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~----~si~~G~is~ 170 (1108)
..+.+..+-+..||. +|||||+++....-...+.++.|.......|+.+.+.|+..... .......+.-
T Consensus 81 ~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~ 160 (251)
T 3gov_B 81 NEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGKQFLQRFPETLMEIEIPI 160 (251)
T ss_dssp SCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCCCTTCEEEEEECSCCTTSCCCSBCEEEEEEE
T ss_pred cceEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCCCCCCCCEEEEEcCCCCCCCCCCccceEEeeEE
Confidence 235566777777876 69999999753211113455566556668899999999864322 1222222222
Q ss_pred ecCC--CCCCCC--CCcccccceEEEE-----eeecCCCCCCCceecc---cC--cEEEEeecccCCC---CcccccChH
Q 001280 171 LDRD--APHYKK--DGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW---QG--RAVALNAGSKSSS---ASAFFLPLE 233 (1108)
Q Consensus 171 ~~~~--~~~~~~--~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~---~G--~vVGi~~~~~~~~---~~~falPi~ 233 (1108)
+... ...|.. ....+ .+|=+ ....-.|.|||||+-. +| .++||.+.+..-. ..+.+..+.
T Consensus 161 ~~~~~C~~~~~~~~~~~~~---~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~ 237 (251)
T 3gov_B 161 VDHSTCQKAYAPLKKKVTR---DMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIH 237 (251)
T ss_dssp ECHHHHHHHTTTTTCCCCT---TEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETT
T ss_pred ECHHHhhhhhhhccCCCCC---CcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHH
Confidence 2210 000110 00111 12222 1234579999999853 34 6999998764321 224445555
Q ss_pred HHHHHHHHH
Q 001280 234 RVVRALRFL 242 (1108)
Q Consensus 234 ~i~~~l~~l 242 (1108)
..+..+++.
T Consensus 238 ~~~~WI~~~ 246 (251)
T 3gov_B 238 HNKDWIQRV 246 (251)
T ss_dssp TTHHHHHHH
T ss_pred HhHHHHHHH
Confidence 555555443
No 242
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.33 E-value=2.3e-07 Score=86.28 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=51.2
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++. + ++.+.|. +.|++
T Consensus 30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~-g~~v~l~-v~r~~ 89 (102)
T 2d90_A 30 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-G-GDQTTLL-VLDKE 89 (102)
T ss_dssp SSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-S-TTEEEEE-ECSTT
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C-CCEEEEE-EEECC
Confidence 38999999999999999999999999999999998 5899999987 3 7889998 55544
No 243
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.33 E-value=4.3e-07 Score=85.03 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=52.1
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGISM 358 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~~~ 358 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.++. ++..++. ..|+.+.|+|.|+++..
T Consensus 25 ~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~~ 88 (106)
T 3ngh_A 25 TDGHLI-RVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR-KSGNSVTLLVLDGDSYE 88 (106)
T ss_dssp CCSCEE-ECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH-HTTTEEEEEEECHHHHH
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCEEEEEEEECCeee
Confidence 467887 69999999999 99999999999999999987 6666665 46889999999987643
No 244
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=5.6e-07 Score=82.28 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=50.9
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++||++||.|++|||+++.++ .++...++. .++.+.|. +.|+++
T Consensus 33 ~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~g~ 92 (94)
T 2eeg_A 33 PLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG--CHDHLTLS-VSSGPS 92 (94)
T ss_dssp CCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT--CCSCEEEE-EECCSS
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCC
Confidence 67999999999999999999999999999999995 677777776 47789998 678775
No 245
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.32 E-value=9.9e-07 Score=83.09 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=54.0
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCC--CCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIE--HGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~--~~~~v~l~~v~rdg~ 1068 (1108)
+++|.+|.++|||+++| |++||.|++|||+++.+ +++++++++..+ .++.++|. +.|++.
T Consensus 42 ~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~-v~R~~~ 106 (109)
T 1wi4_A 42 LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIA-FIRSGP 106 (109)
T ss_dssp SEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEE-EECCCC
T ss_pred CEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEE-EEeCCC
Confidence 68999999999999999 99999999999999998 899999999865 47888888 677764
No 246
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.32 E-value=6.4e-07 Score=86.46 Aligned_cols=60 Identities=27% Similarity=0.370 Sum_probs=53.0
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhc-CCCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDD-GVDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~-~~g~~v~l~V~R~g~~ 357 (1108)
.|++| ..|.++|||++ ||++||+|++|||++|.++ .++..++.. ..|+.+.|+|.|+++.
T Consensus 51 ~gv~V-~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 114 (124)
T 3tsv_A 51 VGIFV-AGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 114 (124)
T ss_dssp SCEEE-EEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHHH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCch
Confidence 67777 69999999999 9999999999999999999 888887754 7889999999998653
No 247
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Probab=98.32 E-value=1.1e-05 Score=86.07 Aligned_cols=179 Identities=14% Similarity=0.173 Sum_probs=100.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~~ 116 (1108)
.|-+|+|.... ......++|.+|+++ +|||+||++.. ...+.+.. .+.+..+-+..||.
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLI~~~--~VLTAAHC~~~---~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (227)
T 1iau_A 12 RPYMAYLMIWD-------QKSLKRCGGFLIRDD--FVLTAAHCWGS---SINVTLGAHNIKEQEPTQQFIPVKRPIPHPA 79 (227)
T ss_dssp STTEEEEEEEC-------SSCEEEEEEEEEETT--EEEECGGGCCS---EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred cCcEEEEEEEC-------CCCceEEEEEEEcCC--EEEECHHhCCC---ceEEEEccccccCCCCccEEEEEEEEECCCC
Confidence 36788886531 111367999999965 99999999983 35555431 35566777777765
Q ss_pred -------CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCC
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYK 179 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~~~ 179 (1108)
+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+... ...|+
T Consensus 80 y~~~~~~~DIALl~L~~~~~~~-~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~ 158 (227)
T 1iau_A 80 YNPKNFSNDIMLLQLERKAKRT-RAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLR 158 (227)
T ss_dssp CCTTTCTTCCEEEEESSCCCCB-TTBCCCCCCCTTCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHHTT
T ss_pred CCCCCCCCCeEEEEECCcccCC-CceecccCCCCCCCCCCCCEEEEEEcccCCCCCCcCceeeEeeeeeechHHhhhHhc
Confidence 599999997532 21 123444443 33357899999999864321 11222222211110 00011
Q ss_pred CCCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecccCC-CCcccccChHHHHHHHHH
Q 001280 180 KDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 180 ~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falPi~~i~~~l~~ 241 (1108)
. .+.. ...+-+. ...-.|.|||||+- +|.++||.+.+-.. ..-+.+..+...+..+++
T Consensus 159 ~-~~~~--~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~gc~~~~~p~vyt~v~~~~~WI~~ 222 (227)
T 1iau_A 159 H-YYDS--TIELCVGDPEIKKTSFKGDSGGPLVC-NKVAQGIVSYGRNNGMPPRACTKVSSFVHWIKK 222 (227)
T ss_dssp T-TCCT--TTEEEESCTTSCCBCCTTCTTSEEEE-TTEEEEEEEEECTTSCSCEEEEEGGGGHHHHHH
T ss_pred c-ccCC--CcEEEeECCCCCCeeeecCCCchheE-eeEEEEEEeEecCCCCCCeEEEEHHHHHHHHHH
Confidence 1 0110 0022221 23456999999996 57999999876321 123344445444444443
No 248
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.31 E-value=9.3e-07 Score=82.02 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=51.8
Q ss_pred eEEEEEecCCChhhh-cCCCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEEEEEe
Q 001280 1008 GVYVARWCHGSPVHR-YGLYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHL 1065 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~-~GL~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~~v~r 1065 (1108)
+++|.+|.++|||++ +||++||.|++|||+++ .+++++.++++..+.++.++|+ +.|
T Consensus 38 ~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R 97 (101)
T 2yt7_A 38 TAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS-IVH 97 (101)
T ss_dssp CEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEE-ECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEe
Confidence 689999999999999 67999999999999999 8999999999987668889988 444
No 249
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.31 E-value=5e-07 Score=80.49 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=47.9
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEEC
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
..|++| ..|.++|||++ ||++||+|++|||+.+.++ .++..++.. .++.+.|+|.|+
T Consensus 22 ~~~~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 81 (83)
T 2kv8_A 22 QAPCVL-SCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGK-CSGVLHMVIAEG 81 (83)
T ss_dssp SSSCBC-CBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTT-CSSCEEEEEECC
T ss_pred CCCeEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcC
Confidence 356666 79999999999 9999999999999999999 666666643 467799999986
No 250
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.3e-06 Score=79.29 Aligned_cols=56 Identities=27% Similarity=0.449 Sum_probs=49.3
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe-CChhHHHHHHhcCCCCeEEEEEEEC
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI-TQFLKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v-~~~~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
.|++| ..|.++|||++ | |++||+|++|||+++ .++.++..++... ++++.|+|.|.
T Consensus 29 ~~v~V-~~V~~~spA~~ag~L~~GD~I~~ing~~v~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 29 GELVI-ARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp SSEEE-EEECSSSHHHHHCCCCTTCEEEEETTEECTTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 56666 79999999999 7 999999999999999 9999999888664 67899998874
No 251
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.31 E-value=1.5e-06 Score=79.68 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=49.5
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHL 1065 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~r 1065 (1108)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++.. +..++|+ +.+
T Consensus 38 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~~ 94 (96)
T 2ego_A 38 VTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS--GNVLRLE-TLY 94 (96)
T ss_dssp EEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT--TTEEEEE-EEC
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEE
Confidence 8999999999999999999999999999999999 69999999985 4478887 444
No 252
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.31 E-value=1.6e-06 Score=79.14 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=50.9
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++.. +..++|+ +.|+|+
T Consensus 33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~R~g~ 94 (94)
T 2fe5_A 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT--SDMVYLK-VAKPGS 94 (94)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC--CSEEEEE-EECCCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEcCCC
Confidence 489999999999999999 99999999999999988 57888888763 4588888 677663
No 253
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=98.31 E-value=1e-06 Score=84.16 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=53.1
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++. .++.++|+ +.|++.
T Consensus 54 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~ 115 (117)
T 2byg_A 54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN--TSEVVYLK-VGKPTT 115 (117)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT--CCSEEEEE-EEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCc
Confidence 489999999999999999 9999999999999999 88999999986 37889998 677664
No 254
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.31 E-value=1.5e-06 Score=81.68 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=49.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.+++| ..|.++|||++ ||++||+|++|||+++. ++.++..++....++.++|+|.|...
T Consensus 44 ~~v~V-~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~~ 105 (109)
T 2vsv_A 44 APVQV-HFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLD 105 (109)
T ss_dssp SSCEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC-
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECCC
Confidence 45566 79999999999 99999999999999999 55888888866655669999988543
No 255
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Probab=98.31 E-value=2.5e-06 Score=91.25 Aligned_cols=178 Identities=13% Similarity=0.139 Sum_probs=101.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~~ 116 (1108)
.|-+|+|... ....++|.+|+++ +|||+|||+.. .....+.+.. ...+..+-+..||.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~ 78 (226)
T 1azz_A 12 WPHQAALFID----------DMYFCGGSLISPE--WILTAAHCMDG-AGFVDVVLGAHNIREDEATQVTIQSTDFTVHEN 78 (226)
T ss_dssp STTEEEEEET----------TTEEEEEEEEETT--EEEECHHHHTT-CSCEEEEESCSBSSSCCTTCEEEEECCEEECTT
T ss_pred cCCEEEEEEC----------CcEEEEEEEecCC--EEEEhHHhcCC-CCceEEEEcceEcCCCCCccEEEEEEEEEECCC
Confidence 3667888651 2467999999965 99999999984 4456666532 23455555566654
Q ss_pred -------CceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCC
Q 001280 117 -------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKD 181 (1108)
Q Consensus 117 -------~DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~ 181 (1108)
+||||||++..-.....+.++.|.......|+.+.+.|+..... .......+.-+... ...|+.
T Consensus 79 y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~- 157 (226)
T 1azz_A 79 YNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGI- 157 (226)
T ss_dssp CBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCCCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHSC-
T ss_pred CCCCCCCCceEEEEECCccccCCCcccccCCCCCCCCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhHhhhhhCc-
Confidence 69999999753211113445555544457899999999864321 11122122222110 000110
Q ss_pred CcccccceEEEEe----eecCCCCCCCceecccCcEEEEeecccC-C---CCcccccChHHHHHHHHHH
Q 001280 182 GYNDFNTFYMQAA----SGTKGGSSGSPVIDWQGRAVALNAGSKS-S---SASAFFLPLERVVRALRFL 242 (1108)
Q Consensus 182 ~~~~~~~~~i~~~----a~~~~G~SGgPv~n~~G~vVGi~~~~~~-~---~~~~falPi~~i~~~l~~l 242 (1108)
..+ .++-+. ...-.|.|||||+ .+|.++||.+.+.. . ..-+.+..+...+..+++.
T Consensus 158 -~~~---~~~Ca~~~~~~~~C~GDSGgPL~-~~~~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~ 221 (226)
T 1azz_A 158 -VTD---GNICIDSTGGKGTCNGDSGGPLN-YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ 221 (226)
T ss_dssp -CCT---TEEEECCTTTCBCCTTCTTCEEE-ETTEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHH
T ss_pred -CCC---ceEeecCCCCCccCCCCCCcceE-ECCEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHH
Confidence 011 112221 2345699999999 57899999987642 1 1223344455555555443
No 256
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=98.30 E-value=5.4e-07 Score=84.61 Aligned_cols=60 Identities=28% Similarity=0.459 Sum_probs=51.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .|+.+.|+|.|+++.
T Consensus 43 ~~gv~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 43 ATGIYV-KSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLLLIRRLPL 106 (108)
T ss_dssp CCCCEE-EEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-HCSEEEEEEEECCCC
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 467777 69999999999 9 99999999999999998 4666666655 688999999998864
No 257
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.30 E-value=1.1e-06 Score=85.36 Aligned_cols=60 Identities=22% Similarity=0.327 Sum_probs=55.2
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.++++. .++.+.|. +.|+|+.
T Consensus 46 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~~ 108 (129)
T 2dmz_A 46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN--AGQVVHLT-LVRRKTS 108 (129)
T ss_dssp CEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH--CCSSEEEE-EEEESSS
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcc
Confidence 489999999999999999 99999999999999999 9999999998 48889999 7787764
No 258
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...
Probab=98.30 E-value=2.6e-05 Score=84.03 Aligned_cols=185 Identities=12% Similarity=0.149 Sum_probs=101.3
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEec---------CCeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~---------d~~~~~a~vv~~d 114 (1108)
.|-+|.|.... ........++|.+|+++ +|||+|||+... .....+.+. ....+.++-+..|
T Consensus 12 ~Pw~v~l~~~~-----~~~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~h 84 (247)
T 3mhw_U 12 QPWFAAIYRRH-----RGGSVTYVCGGSLISPC--WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILH 84 (247)
T ss_dssp STTEEEEEEEC-----TTSCEEEEEEEEEEETT--EEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEEC
T ss_pred CCCEEEEEEec-----CCCccceEEEEEEEeCC--EEEEcHHhCcCCCCCccEEEEeccccccCCCCCCEEEEEEEEEEC
Confidence 46788886542 11111457999999965 999999999742 233555543 1345667767777
Q ss_pred CC---------CceEEEEECCC----CcccccccCCCCC--CcccCCCCEEEEEecCCCCC------CeEEEEEEEEecC
Q 001280 115 PV---------HDFGFFRYDPS----AIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDR 173 (1108)
Q Consensus 115 ~~---------~DlAlLk~d~~----~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~ 173 (1108)
|. +|||||+++.. ......+.++.|. ...+..|+.+.+.|+..... .......+..+..
T Consensus 85 p~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~ 164 (247)
T 3mhw_U 85 KDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISH 164 (247)
T ss_dssp TTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEEECH
T ss_pred CCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCcccchhheeeEEEEECh
Confidence 65 59999999754 1111123444443 35667899999999864321 1122222222221
Q ss_pred ---CCCCCCCCCcccccceEEEEe-----eecCCCCCCCceecc-cC--cEEEEeecccCC---CCcccccChHHHHHHH
Q 001280 174 ---DAPHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRAL 239 (1108)
Q Consensus 174 ---~~~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falPi~~i~~~l 239 (1108)
....+......+ .++=+. ...-.|.|||||+-. +| .++||.+.+..- ...+.+..+...+..+
T Consensus 165 ~~C~~~~~~~~~~~~---~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI 241 (247)
T 3mhw_U 165 RECQQPHYYGSEVTT---KMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241 (247)
T ss_dssp HHHTSTTTTGGGCCT---TEEEEECTTSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGCHHHH
T ss_pred HHhcCccccCCcCCC---CeEecCCCCCCCccCCCCCCCeEEEEECCCEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHH
Confidence 111010001111 122221 234579999999843 34 599999876422 1223344444444444
Q ss_pred H
Q 001280 240 R 240 (1108)
Q Consensus 240 ~ 240 (1108)
+
T Consensus 242 ~ 242 (247)
T 3mhw_U 242 R 242 (247)
T ss_dssp H
T ss_pred H
Confidence 3
No 259
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.30 E-value=1.5e-06 Score=84.46 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=54.0
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++.++++..+.++.++|. +.|++
T Consensus 44 ~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~ 105 (129)
T 2kpk_A 44 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE-LCRGY 105 (129)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEE-EEECS
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEeCC
Confidence 78999999999999999 99999999999999984 78999999997768899998 67765
No 260
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.30 E-value=2e-06 Score=104.69 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEeCCccCcceEE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQDLHYWPTWEL 1086 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~d~~y~pt~el 1086 (1108)
.|++|..|.+||||+++||++||.|++|||+++ +.++|.++++..+.|+.|+|. +.|+|+.+.+++++...--.++.|
T Consensus 496 ~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v-~~~~l~~~l~~~~~g~~v~l~-v~R~g~~~~~~v~l~~~~~~~~~l 573 (597)
T 4fgm_A 496 QGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQA-TEQSVKRILERYIPGDTVTIH-AFRRDELMTLELTWQEPAKSSYVL 573 (597)
T ss_dssp TEEEEEEECTTSHHHHHTCCTTCEEEEETTEEC-CTTTHHHHHTTCCTTCEEEEE-EEETTEEEEEEEECCCCCCCEEEE
T ss_pred CeEEEEEeCCCChHHHCCCCCCCEEEEECCEEC-CHHHHHHHHHhcCCCCEEEEE-EEECCEEEEEEEEecCCCCceEEE
Confidence 389999999999999999999999999999999 689999999987779999999 899999999999998776667788
Q ss_pred EEcCC--CCCeE
Q 001280 1087 IFDPD--TALWR 1096 (1108)
Q Consensus 1087 ~~~~~--~~~W~ 1096 (1108)
..++. -..|-
T Consensus 574 ~~~~~~~~~~wl 585 (597)
T 4fgm_A 574 SVEQPDKLKGWL 585 (597)
T ss_dssp EESCGGGSTTSS
T ss_pred EECCHHHHHhhh
Confidence 76542 34563
No 261
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.29 E-value=6.7e-07 Score=80.00 Aligned_cols=58 Identities=21% Similarity=0.420 Sum_probs=47.5
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++. ..++++.|+|.|+++
T Consensus 25 ~~v~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~~ 85 (85)
T 1rgw_A 25 MPLTI-SRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK-SASYNLSLTLQKSKR 85 (85)
T ss_dssp SCCBE-EEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHT-TCSSCEEEEEESCCC
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHH-cCCCeEEEEEEeCCC
Confidence 56666 79999999999 9999999999999999998 44444443 356779999999863
No 262
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.29 E-value=1.2e-06 Score=82.29 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=48.1
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRT 1062 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~ 1062 (1108)
+++|..|.++|||+++||++||.|++|||+++. +++++.+.++..+ ++.+.|++
T Consensus 45 ~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~-~~~v~l~V 100 (109)
T 2vsv_A 45 PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFG-EDEIEMKV 100 (109)
T ss_dssp SCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TSCEEEEE
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CCeEEEEE
Confidence 568999999999999999999999999999999 6699999998754 66688884
No 263
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=7.4e-07 Score=81.49 Aligned_cols=59 Identities=24% Similarity=0.404 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..+++| ..|.+++||++ ||++||+|++|||+++.++. ++..++.. .|+.+.|+|.|+++
T Consensus 31 ~~~v~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 31 SAPLTI-SRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGPS 92 (94)
T ss_dssp TSCCEE-CCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 456666 79999999999 99999999999999999973 44444433 68899999999875
No 264
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.29 E-value=6.3e-07 Score=83.01 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=50.2
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++.. +..++|+ +.|++.
T Consensus 37 ~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~~~ 96 (100)
T 1whd_A 37 PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC--PSEIILL-VWRVSG 96 (100)
T ss_dssp SCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC--SSEEEEE-EEECCS
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECCC
Confidence 6789999999999999999999999999999994 69999999874 3448888 677654
No 265
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.29 E-value=1.2e-06 Score=81.12 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=51.6
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.++ +++...++. .++.++|. +.|++.
T Consensus 37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~ 98 (101)
T 2jik_A 37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN--AGYAVSLR-VQHRLE 98 (101)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT--CCSEEEEE-EEEESC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEEEE-EEeCCC
Confidence 489999999999999999 999999999999999885 788888876 37789998 677664
No 266
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.29 E-value=1.4e-06 Score=81.89 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=49.4
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTV 1063 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v 1063 (1108)
|++|..|.++|||+++||++||.|++|||+++.++ +++.+.++.. ++.++|+++
T Consensus 46 gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~ 101 (109)
T 1q3o_A 46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG--GNTLMVKVV 101 (109)
T ss_dssp SEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT--TTEEEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCEEEEEEE
Confidence 89999999999999999999999999999999999 9999999873 677888743
No 267
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.29 E-value=3.2e-07 Score=86.56 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=57.5
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEEe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1076 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk~ 1076 (1108)
.|++|..|.++|||+++| |++||.|++|||+++.+ +.++...++. .++.++|. +.|++....+++++
T Consensus 36 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~~~~~~~v~~ 105 (110)
T 1um1_A 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH--GGKKMRFL-VAKSDVETAKKIHS 105 (110)
T ss_dssp SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT--CCSEEEEE-EECCCHHHHHHHSS
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcceeEEEEe
Confidence 489999999999999999 99999999999999974 7788888876 38889998 78888766655554
No 268
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.29 E-value=8.2e-07 Score=81.29 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=50.7
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
|++|..|.++|||+++| |++||.|++|||+++.+ +.+....++. .++.++|. +.|+++
T Consensus 30 gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~ 90 (95)
T 2vwr_A 30 GVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQA--SGERVNLT-IARPGK 90 (95)
T ss_dssp SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH--CCSEEEEE-EEEESC
T ss_pred CEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEcCCc
Confidence 89999999999999999 99999999999999977 5677777775 38889998 677765
No 269
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*
Probab=98.29 E-value=1.7e-05 Score=84.74 Aligned_cols=177 Identities=15% Similarity=0.179 Sum_probs=100.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec----------CCeEEeEEEEEEcC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV----------NREEIPVYPIYRDP 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~----------d~~~~~a~vv~~d~ 115 (1108)
.|-+|.|... .....++|.+|+++ +|||+||++.. . ..+++. ..+.+.+.-+..||
T Consensus 12 ~Pw~v~l~~~---------~~~~~CgGtLIs~~--~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~~v~~~~~Hp 77 (227)
T 2psx_A 12 QPWQAALLLR---------PNQLYCGAVLVHPQ--WLLTAAHCRKK-V--FRVRLGHYSLSPVYESGQQMFQGVKSIPHP 77 (227)
T ss_dssp CTTEEEEEET---------TTEEEEEEEEEETT--EEEECGGGCCS-S--CEEEESCCBSSCCCCTTCEEEEEEEEEECT
T ss_pred CCCEEEEEec---------CCCceEEEEEEcCC--EEEEhHHcCCC-C--cEEEEeeeecccCCCCCcEEEEEEEEEeCC
Confidence 4667777652 12467999999965 99999999983 2 334332 23456666666665
Q ss_pred C-------CceEEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCC
Q 001280 116 V-------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKK 180 (1108)
Q Consensus 116 ~-------~DlAlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~ 180 (1108)
. +||||||++..-.....+.++.|....+..|+.+.+.|+..... .......+..+... ...|..
T Consensus 78 ~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~ 157 (227)
T 2psx_A 78 GYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPR 157 (227)
T ss_dssp TCCSSSCTTCCEEEEESSCCCCCSSSCCCCBCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEBCCHHHHHHHSTT
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCCceeeeECCCCCCCCCCEEEEEeCcccCCCCCCCCchheEEEEEecCHhHhhhhcCC
Confidence 4 59999999853211123455666666778999999999864321 11222222222110 000111
Q ss_pred CCcccccceEEEEe----eecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHH
Q 001280 181 DGYNDFNTFYMQAA----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 181 ~~~~~~~~~~i~~~----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~ 241 (1108)
.+.+ .+|=+. ...-.|.|||||+- ++.++||.+.+... ..-+.+..+...+..+++
T Consensus 158 -~~~~---~~~Ca~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~ 221 (227)
T 2psx_A 158 -QIDD---TMFCAGDKAGRDSCQGDSGGPVVC-NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQE 221 (227)
T ss_dssp -TCCT---TEEEECCSTTCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHH
T ss_pred -CCCC---CEEcccCCCCCccCCCCCCcceee-CCEEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHH
Confidence 1111 122221 23446999999996 56999999876311 123444445444444443
No 270
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=1.1e-06 Score=81.84 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=51.8
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++. .++.++|. +.|+|+
T Consensus 39 ~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~g~ 99 (104)
T 2djt_A 39 PLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA--GGPQLHLV-IRRPLS 99 (104)
T ss_dssp CCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH--TCSEEEEE-ECCCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECCC
Confidence 68999999999999999 99999999999999988 5788888887 38889998 677775
No 271
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.28 E-value=5.4e-07 Score=80.27 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=49.2
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++.. ++.++|. +.|+
T Consensus 24 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~ 81 (83)
T 2kv8_A 24 PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC--SGVLHMV-IAEG 81 (83)
T ss_dssp SCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC--SSCEEEE-EECC
T ss_pred CeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEcC
Confidence 67899999999999999999999999999999999 8999888753 4568887 5654
No 272
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.28 E-value=1.3e-06 Score=81.11 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=50.8
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.. .|+.+.|+|.|++..
T Consensus 29 ~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~ 91 (102)
T 2d90_A 29 QKGQII-KDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEAE 91 (102)
T ss_dssp SSSEEE-ECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTTCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCCc
Confidence 467777 69999999999 9999999999999999984 667666655 488999999987654
No 273
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.28 E-value=1.2e-06 Score=81.95 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=48.8
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEEEEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGISMTVNL 362 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~~~~~~v 362 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+.. ++...+. ..|+.+.|+|.|+++.....+
T Consensus 32 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~~~~~~~~ 100 (105)
T 2awx_A 32 DNSIYV-TKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK-NTSDFVYLKVAKPTSMYISRH 100 (105)
T ss_dssp BCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH-SCCSEEEEEEECCCC------
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEcCCCCCCccc
Confidence 457777 79999999999 9 9999999999999997754 4434443 348899999999988766544
No 274
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.28 E-value=1.6e-06 Score=78.61 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=46.9
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++....++.+.+.+.|+++
T Consensus 26 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 88 (91)
T 1g9o_A 26 KLGQYI-RLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88 (91)
T ss_dssp CSSEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCCS
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCcc
Confidence 367777 79999999999 999999999999999998 5666666665555555555666654
No 275
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...
Probab=98.28 E-value=9.2e-06 Score=86.57 Aligned_cols=164 Identities=14% Similarity=0.205 Sum_probs=94.8
Q ss_pred ccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC-------CceEEEEECCCC-c
Q 001280 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV-------HDFGFFRYDPSA-I 129 (1108)
Q Consensus 67 ~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~-------~DlAlLk~d~~~-~ 129 (1108)
...++|.+|+++ +|||+||++. .. +.+.+. +.+.+.++-+..||. +||||||++..- +
T Consensus 22 ~~~CgGsLIs~~--~VLTAAHC~~-~~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~ 96 (223)
T 3mfj_A 22 YHFCGGSLINSQ--WVVSAAHCYK-SG--IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASL 96 (223)
T ss_dssp SEEEEEEEEETT--EEEECGGGCC-SS--CEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCC
T ss_pred CeEEEEEEecCC--EEEEhHHhcC-CC--cEEEECCceecccCCCcEEEEeeEEEECCCCCCCCCCCCEEEEEeCCCccc
Confidence 367999999965 9999999995 22 344432 235566666677764 699999997532 2
Q ss_pred ccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCcccccceEEEEe-----ee
Q 001280 130 QFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQAA-----SG 196 (1108)
Q Consensus 130 ~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~~~~~~~~~~i~~~-----a~ 196 (1108)
. ..+.++.|.......|+.+.+.|+..... .......+..+... ...|.. ...+ .+|-+. ..
T Consensus 97 ~-~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~ 171 (223)
T 3mfj_A 97 N-SRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG-QITS---NMFCAGYLEGGKD 171 (223)
T ss_dssp B-TTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-TCCT---TEEEESCTTSSCB
T ss_pred C-CcEeeeECCCCCCCCCCEEEEEeeeccCCCCCcccchheEEEEEEeCHHHhhhhhcC-cCCC---CEEEccCCCCCCC
Confidence 1 13556666666668899999999864321 11222222222110 000111 0111 122221 23
Q ss_pred cCCCCCCCceecccCcEEEEeecccCC---CCcccccChHHHHHHHHH
Q 001280 197 TKGGSSGSPVIDWQGRAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 197 ~~~G~SGgPv~n~~G~vVGi~~~~~~~---~~~~falPi~~i~~~l~~ 241 (1108)
.-.|.|||||+- +|+++||.+.+..- ...+.+..+...+..+++
T Consensus 172 ~C~GDSGgPL~~-~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~ 218 (223)
T 3mfj_A 172 SCQGDSGGPVVC-SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218 (223)
T ss_dssp CCTTCTTCEEEE-TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHH
T ss_pred cCCCCcccceEE-CCEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHH
Confidence 457999999996 68999999876421 122344455545555443
No 276
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Probab=98.28 E-value=1.1e-05 Score=86.02 Aligned_cols=142 Identities=17% Similarity=0.226 Sum_probs=85.4
Q ss_pred EEEEEEEeCCCcEEEEcccccCCCCeEEEEEec-------CCeEEeEEEEEEcCC-------CceEEEEECCCCcccccc
Q 001280 69 YATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV-------NREEIPVYPIYRDPV-------HDFGFFRYDPSAIQFLNY 134 (1108)
Q Consensus 69 ~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~-------d~~~~~a~vv~~d~~-------~DlAlLk~d~~~~~~~~~ 134 (1108)
.++|.+|+++ +|||+||++. . ...+.+. ..+.+.++-+..||. +|||||+++..-.....+
T Consensus 25 ~CgGtLI~~~--~VLTAAHC~~-~--~~~v~~G~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v 99 (224)
T 2qxi_A 25 HCGGVLVNER--WVLTAAHCKM-N--EYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMV 99 (224)
T ss_dssp EEEEEEEETT--EEEECGGGCC-S--CEEEEESCSBTTCTTSEEEEECEEEECTTCCTTTCTTCCEEEECSSCCCCBTTB
T ss_pred EEEEEEecCC--EEEEhHHcCC-C--CcEEEEeeeecCCCccEEEEEEEEEECCCCCCCCCcCcEEEEEeCCCCcCCCce
Confidence 7999999965 9999999995 2 3455543 234566666777765 699999997532111135
Q ss_pred cCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCcccccceEEEEe-----eecCCCC
Q 001280 135 DEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQAA-----SGTKGGS 201 (1108)
Q Consensus 135 ~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~~~~~~~~~~~~~i~~~-----a~~~~G~ 201 (1108)
.++.|.......|+.+.+.|+..... .......+..+... ...|+. ...+ .+|-+. ...-.|.
T Consensus 100 ~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GD 175 (224)
T 2qxi_A 100 KKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKD-LLEN---SMLCAGIPDSKKNACNGD 175 (224)
T ss_dssp CCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHHGG-GCCT---TEEEEECTTCCCBCCTTC
T ss_pred eeEECCCCCCCCCCEEEEEeCCccCCCCCCCChhheEEEeeecCHHHhhHHhcC-cCCC---CeEEecCCCCCCccCCCC
Confidence 56666655567899999999864321 11222222222110 000110 0011 122221 2345799
Q ss_pred CCCceecccCcEEEEeecc
Q 001280 202 SGSPVIDWQGRAVALNAGS 220 (1108)
Q Consensus 202 SGgPv~n~~G~vVGi~~~~ 220 (1108)
|||||+- +|.++||.+.+
T Consensus 176 SGgPL~~-~~~l~Gi~S~g 193 (224)
T 2qxi_A 176 SGGPLVC-RGTLQGLVSWG 193 (224)
T ss_dssp TTCEEEE-TTEEEEEEEEC
T ss_pred ccccEEE-CCEEEEEEEeC
Confidence 9999996 67999999876
No 277
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.28 E-value=4.2e-07 Score=85.09 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=52.4
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHH--HHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLE--AFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~--~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.|++|..|.++|||+++||++||.|++|||+++.+++ ++...+++ .++.++|. +.|++.
T Consensus 26 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 86 (106)
T 3ngh_A 26 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK--SGNSVTLL-VLDGDS 86 (106)
T ss_dssp CSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHH--TTTEEEEE-EECHHH
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCEEEEE-EEECCe
Confidence 3789999999999999999999999999999999986 99999985 47889998 667664
No 278
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=98.28 E-value=1.5e-06 Score=83.54 Aligned_cols=60 Identities=27% Similarity=0.410 Sum_probs=51.5
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhc-CCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDD-GVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~-~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. ..|+.|.|+|.|+|+
T Consensus 57 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 121 (121)
T 2kom_A 57 SAPIYV-KNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121 (121)
T ss_dssp SCCEEE-EEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECCC
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCCC
Confidence 356666 79999999999 9 99999999999999988 4777777765 458999999999874
No 279
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.28 E-value=1.7e-06 Score=79.60 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=48.7
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
.|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++... ++++.|+|.+.
T Consensus 36 ~gv~V-~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 36 QSCTV-ARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp CCEEE-EEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 56666 79999999999 9 99999999999999996 89999888654 67888888764
No 280
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=98.28 E-value=4.9e-07 Score=85.89 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=55.6
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCeEEEE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKPRVL 1072 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~ 1072 (1108)
.|++|..|.++|||+++||++||.|++|||+++.++ +++.+.++. + ++.++|+ +.|+++...+
T Consensus 38 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~-g~~v~l~-v~R~~~~~~~ 102 (114)
T 2edz_A 38 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK-S-GNSVTLL-VLDGDSYEKA 102 (114)
T ss_dssp CSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHH-T-CSEEEEE-EECHHHHHHH
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C-CCEEEEE-EEECCcceeh
Confidence 378999999999999999999999999999999885 999999987 3 8999999 7888765443
No 281
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}
Probab=98.28 E-value=8.3e-06 Score=87.68 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=99.4
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|.|... ....++|.+|+++ +|||+|||+.. . ..+.+. ..+.+.++-+..||.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGsLIs~~--~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 76 (238)
T 1spj_A 12 QPWQAALYHF----------STFQCGGILVHRQ--WVLTAAHCISD-N--YQLWLGRHNLFDDENTAQFVHVSESFPHPG 76 (238)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECGGGCCS-S--EEEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred CCcEEEEEeC----------CCeeEEEEEecCC--EEEEcHHhCCC-C--ceEEEEeccccCCCCCceEEEEEEEEcCCC
Confidence 3567777642 2467999999965 99999999984 2 344432 134556666666654
Q ss_pred ------------------CceEEEEECCCCc-ccccccCCCCCCcccCCCCEEEEEecCCCCC------CeEEEEEEEEe
Q 001280 117 ------------------HDFGFFRYDPSAI-QFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARL 171 (1108)
Q Consensus 117 ------------------~DlAlLk~d~~~~-~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~ 171 (1108)
+|||||+++.... -...+.++.|.......|+.+.+.|+..... .......+.-+
T Consensus 77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~ 156 (238)
T 1spj_A 77 FNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKIL 156 (238)
T ss_dssp SCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEE
T ss_pred ccccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCCCCCCCEEEEEecCCCCCCCCCCcCcccEEEEeec
Confidence 5999999975321 1113455666666677899999999864321 11222222222
Q ss_pred cCC--CCCCCCCCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHH
Q 001280 172 DRD--APHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALR 240 (1108)
Q Consensus 172 ~~~--~~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~ 240 (1108)
... ...|.. ...+ .+|-+. ...-.|.|||||+- +|.++||.+.+... ..-+.+.-+...+..++
T Consensus 157 ~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~ 231 (238)
T 1spj_A 157 PNDECKKAHVQ-KVTD---FMLCVGHLEGGKDTCVGDSGGPLMC-DGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIE 231 (238)
T ss_dssp CHHHHHHHCSS-CCCT---TEEEEECTTCSSBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHH
T ss_pred CHHHhhhhccC-CCCC---CeEEeeCCCCCCCCCCCCCCCcEEE-cCEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHH
Confidence 210 000111 1111 122221 23457999999995 57999999876321 12233444444444444
No 282
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.28 E-value=2e-06 Score=78.88 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=49.3
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++... ++.+.|+|.|+
T Consensus 36 ~~~~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 95 (96)
T 2ego_A 36 EMVTFV-ARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLETLYG 95 (96)
T ss_dssp CEEEEE-EEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEECC
T ss_pred CCCeEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence 357776 79999999999 999999999999999999 58888888665 56899998875
No 283
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.27 E-value=8.8e-07 Score=80.34 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=46.4
Q ss_pred EEEEecCCCcccc-CCCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEEC
Q 001280 301 VVDSVVPGGPAHL-RLEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 301 Vv~~V~~~spA~~-gL~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
+|..|.++|||++ ||++||+|++|||+++ .++.++..++.. .|+.+.|+|.+.
T Consensus 34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~p~ 89 (90)
T 1y7n_A 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN-AVGEIHMKTMPA 89 (90)
T ss_dssp EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHH-CCEEEEEEEECC
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 4479999999999 9999999999999999 578899888864 388899998764
No 284
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A
Probab=98.27 E-value=4.8e-05 Score=81.98 Aligned_cols=183 Identities=14% Similarity=0.152 Sum_probs=103.4
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC------CeEEeEEEEEEcC----
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN------REEIPVYPIYRDP---- 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d------~~~~~a~vv~~d~---- 115 (1108)
.|-+|+|... ....++|.+|+++ +|||+|||+......+.+.+.. +..+.++-+..||
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~Hp~y~~ 79 (240)
T 2zgc_A 12 RPYMASLQRN----------GSHLCGGVLVHPK--WVLTAAHCLAQRMAQLRLVLGLHTLDSPGLTFHIKAAIQHPRYKP 79 (240)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECGGGGCSCGGGEEEEESCSBSSSCCEEEEEEEEEECTTCBC
T ss_pred cCcEEEEEeC----------CCeEEEEEEEcCC--EEEEcHHhcCCCCCCEEEEecccccCCCCeEEEEEEEEECCCCCC
Confidence 3667888641 2467999999965 9999999998544346666542 3456666666654
Q ss_pred ----CCceEEEEECCCCcccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CC-CCCCC
Q 001280 116 ----VHDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DA-PHYKK 180 (1108)
Q Consensus 116 ----~~DlAlLk~d~~~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~---~~-~~~~~ 180 (1108)
.+||||||++..-.....+.++.|. ...+..|+.+.+.|+..... .......+..+.. .. ..|..
T Consensus 80 ~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~ 159 (240)
T 2zgc_A 80 VPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNG 159 (240)
T ss_dssp TTSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTCCBCSBCEEEEEEECCHHHHTSTTTTTT
T ss_pred CCCCcccEEEEEeCCcccCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCCCcCceeeeeeeeecCHHHhCCccccCC
Confidence 3699999997532111123444443 23457899999999864321 1122222222221 10 01211
Q ss_pred CCcccccceEEEEe-----eecCCCCCCCceeccc-CcEEEEeecccCC----CCcccccChHHHHHHHHHHHh
Q 001280 181 DGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQ-GRAVALNAGSKSS----SASAFFLPLERVVRALRFLQE 244 (1108)
Q Consensus 181 ~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~-G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l~~ 244 (1108)
...+ .++-+. ...-.|.|||||+-.+ ..++||.+.+... ..-+.+..+...+..+++..+
T Consensus 160 -~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~ 229 (240)
T 2zgc_A 160 -SLSP---SMVCLAADSKDQAPCKGDSGGPLVCGKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTG 229 (240)
T ss_dssp -CCCT---TEEEEECSSTTCBCCTTCTTCEEEETTTTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHC
T ss_pred -CCCC---ceEeeccCCCCCccCCCCccCeeEECCCCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHh
Confidence 1111 122221 2345799999998532 4899999876321 123444555555566655443
No 285
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.27 E-value=1.8e-06 Score=78.86 Aligned_cols=59 Identities=22% Similarity=0.439 Sum_probs=48.8
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
.|++| ..|.++|||++ ||++||+|++|||+.+.++ .++..++.. .++++.+.+.|.+..
T Consensus 29 ~~~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~~~r~~~~ 90 (95)
T 3r68_A 29 KGQII-KDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKELE 90 (95)
T ss_dssp CSEEE-ECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEECC--
T ss_pred CCEEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEECCccc
Confidence 47777 69999999999 9999999999999999999 777777766 567778887776543
No 286
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2
Probab=98.27 E-value=6.4e-06 Score=88.81 Aligned_cols=179 Identities=18% Similarity=0.142 Sum_probs=96.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEe-------cCCeEEeEEEEEEcCC--
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMF-------VNREEIPVYPIYRDPV-- 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~-------~d~~~~~a~vv~~d~~-- 116 (1108)
.|-+|.| .. .....++|.+|+++ +|||+|||+.. ...+.+-. .....+.++-+..||.
T Consensus 15 ~Pw~v~l-~~---------~~~~~CgGsLIs~~--~VLTAAHC~~~-~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~ 81 (240)
T 1sgf_A 15 QPWHVAV-YR---------FNKYQCGGVLLDRN--WVLTAAHCYND-KYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFN 81 (240)
T ss_dssp CTTEEEE-EC---------TTSCCEEEEECSSS--EEEECGGGCCS-CCEEEECC----C-CTTCEEEEEEEEEECTTSC
T ss_pred cCCEEEE-Ee---------CCCeEEEEEEecCC--EEEECHHhCCC-CceEEeCCcccccCCCCceEEEEEEEEcCCCCc
Confidence 4667777 21 12467999999964 99999999973 22222211 1234555555555543
Q ss_pred ----------------CceEEEEECCCC-cccccccCCCCCCcccCCCCEEEEEecCCCCCC------eEEEEEEEEecC
Q 001280 117 ----------------HDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKV------SILAGTLARLDR 173 (1108)
Q Consensus 117 ----------------~DlAlLk~d~~~-~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~------si~~G~is~~~~ 173 (1108)
+|||||+++..- +. ..+.++.|.......|+.+.+.|+...... ......+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~-~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~ 160 (240)
T 1sgf_A 82 MSLLNEHTPQPEDDYSNDLMLLRLSKPADIT-DVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPN 160 (240)
T ss_dssp GGGC----CCTTCBCTTCCEEEEESSCCCCC-SSCCCCCCCCSCCCTTCEEEEC-------C---------CEEEEEECT
T ss_pred ccccccccccccCCCCCceEEEEeCCcCcCC-CcccccCCCCCCCCCCCEEEEEecCCCCCCCCCCCccccEEeeeEeCH
Confidence 699999997532 21 134566666666788999999997643211 111112222221
Q ss_pred C--CCCCCCCCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecccCC----CCcccccChHHHHHHHHHH
Q 001280 174 D--APHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFL 242 (1108)
Q Consensus 174 ~--~~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falPi~~i~~~l~~l 242 (1108)
. ...|.. ...+ .+|=+. ...-.|.|||||+- +|.++||.+.+... ..-+.+..+...+..+++.
T Consensus 161 ~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~ 235 (240)
T 1sgf_A 161 EDCDKAHEM-KVTD---AMLCAGEMDGGSYTCEHDSGGPLIC-DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRET 235 (240)
T ss_dssp HHHHTTCSS-BCCT---TEEEEEECSSSEEECCCCTTCEEEE-TTEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHH
T ss_pred HHhhhhhCC-CcCC---CeEeEccCCCCCCCCCCCCcCcEEE-ccEEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHH
Confidence 0 001111 1111 122221 23567999999996 68999999876321 2234445555555555544
Q ss_pred H
Q 001280 243 Q 243 (1108)
Q Consensus 243 ~ 243 (1108)
.
T Consensus 236 ~ 236 (240)
T 1sgf_A 236 M 236 (240)
T ss_dssp H
T ss_pred H
Confidence 3
No 287
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.27 E-value=4.1e-07 Score=86.23 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=56.5
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeEEEEEEE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1075 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~~~~~lk 1075 (1108)
.|++|.+|.++|||+++| |++||.|++|||+++.+ +.++...++. . ++.++|. +.|++....+++.
T Consensus 35 ~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~-g~~v~l~-v~R~~~~~~~~v~ 103 (113)
T 2g5m_B 35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-T-KGRVRFM-IGRERPGEQSEVA 103 (113)
T ss_dssp EEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH-S-CSSCEEE-EEECCCCTTSSCS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-C-CCeEEEE-EEeCCCCCcchhh
Confidence 489999999999999999 99999999999999985 7778888887 3 7889998 7888876554443
No 288
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.27 E-value=1.6e-06 Score=79.51 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=49.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .|+.+.|+|.|++.
T Consensus 32 ~~g~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 32 HGGIYV-KAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQS 94 (96)
T ss_dssp SSCCEE-EEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred cCCEEE-EEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 467777 79999999999 9 99999999999999994 5666666654 68899999999764
No 289
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.27 E-value=1.7e-06 Score=77.41 Aligned_cols=57 Identities=28% Similarity=0.484 Sum_probs=48.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhc-CCCCeEEEEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDD-GVDKNIELLIER 353 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~-~~g~~v~l~V~R 353 (1108)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. ..|+.+.++|.|
T Consensus 24 ~~~~~V-~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 24 DEFLQI-KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TBCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 356776 79999999999 9 99999999999999985 5778777765 458899999876
No 290
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.27 E-value=1.2e-06 Score=81.88 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=51.9
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++.. ++.++|. +.|++
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~--g~~v~l~-v~R~~ 98 (105)
T 1wha_A 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA--SPTIALL-LEREA 98 (105)
T ss_dssp CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC--CSCEEEE-EEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECC
Confidence 478999999999999999 99999999999999988 89999999863 7779988 67764
No 291
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.26 E-value=1.5e-06 Score=79.32 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=48.5
Q ss_pred CCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 295 GETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
...|++| ..|.++|||++ | |++||+|++|||+++.++ .++..++. ..++.+.|+|.|+|+
T Consensus 31 ~~~gv~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~g~ 94 (94)
T 2fe5_A 31 GDNSIYI-TKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLK-NTSDMVYLKVAKPGS 94 (94)
T ss_dssp TBCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH-TCCSEEEEEEECCCC
T ss_pred CCCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEcCCC
Confidence 3467777 79999999999 9 999999999999999886 44444443 345699999999864
No 292
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.26 E-value=1.6e-06 Score=80.40 Aligned_cols=61 Identities=21% Similarity=0.451 Sum_probs=51.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISM 358 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~ 358 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .|+.+.|+|.|+++..
T Consensus 33 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~~ 97 (102)
T 2i1n_A 33 DPGIFI-TKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRRRQPPP 97 (102)
T ss_dssp CCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEECCCC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCCC
Confidence 468777 79999999999 9 99999999999999987 5555555544 6889999999987643
No 293
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=98.26 E-value=1.9e-06 Score=81.35 Aligned_cols=61 Identities=26% Similarity=0.418 Sum_probs=52.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhc-CCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDD-GVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~-~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. ..|+.+.|+|.|+|+.
T Consensus 38 ~~g~~V-~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 103 (111)
T 2koj_A 38 SAPIYV-KNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA 103 (111)
T ss_dssp SSCEEE-EEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred CcCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence 367776 79999999999 9 99999999999999966 4778777765 4689999999998863
No 294
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.26 E-value=3.6e-07 Score=85.61 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=45.8
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
|++|.+|.++|||+++| |++||.|++|||+++.+. ++....++. + +..+.|. +.|.
T Consensus 26 gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~-~~~v~l~-v~R~ 84 (106)
T 2la8_A 26 GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-A-NGKVSME-VTRP 84 (106)
T ss_dssp SEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHS-C-BSCEEEE-EEEC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-C-CCeEEEE-EEeC
Confidence 89999999999999999 999999999999999863 445555554 3 5568888 5553
No 295
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Probab=98.25 E-value=1.2e-05 Score=86.46 Aligned_cols=162 Identities=12% Similarity=0.139 Sum_probs=93.5
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcC-
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDP- 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~- 115 (1108)
.|-+|+|.... .......++|.+|+++ +|||+|||+.. .....|.+.. ...+.++-+..||
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLIs~~--~VLTAAHC~~~-~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~ 82 (236)
T 1elt_A 12 WPWQISLQYKS------GSSYYHTCGGSLIRQG--WVMTAAHCVDS-ARTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSG 82 (236)
T ss_dssp STTEEEEEEEE------TTEEEEEEEEEEEETT--EEEECHHHHSS-CCCEEEEESCSBTTSCCSCCEEECEEEEEECTT
T ss_pred CCCEEEEEEec------CCceeeEEEEEEEeCC--EEEECHHhhCC-cCceEEEEccccCCCCCCCcEEEEEEEEEECCC
Confidence 36678887642 1111257999999965 99999999984 3456666542 3456677677776
Q ss_pred --------CCceEEEEECCC-CcccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CCC
Q 001280 116 --------VHDFGFFRYDPS-AIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DAP 176 (1108)
Q Consensus 116 --------~~DlAlLk~d~~-~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~---~~~ 176 (1108)
.+||||||++.. .+. ..+.++.|. ...+..|+.+.+.|+..... .......+..+.. ...
T Consensus 83 y~~~~~~~~~DiALl~L~~~~~~~-~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~ 161 (236)
T 1elt_A 83 WNSDDVAGGYDIALLRLNTQASLN-SAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSS 161 (236)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCS-SSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHTST
T ss_pred CCCCCCCCCccEEEEECCCCCccC-CcEEeccCCCccccCCCCCEEEEEeCCCcCCCCCcChhheEeEeeecCHHHhccc
Confidence 569999999743 221 123444443 33467899999999864321 1122222222211 100
Q ss_pred -CCCCCCcccccceEEEEe---eecCCCCCCCceecc-cC--cEEEEeeccc
Q 001280 177 -HYKKDGYNDFNTFYMQAA---SGTKGGSSGSPVIDW-QG--RAVALNAGSK 221 (1108)
Q Consensus 177 -~~~~~~~~~~~~~~i~~~---a~~~~G~SGgPv~n~-~G--~vVGi~~~~~ 221 (1108)
.|+. ...+ .+|-+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 162 ~~~~~-~~~~---~~~Ca~~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~ 209 (236)
T 1elt_A 162 GWWGS-TVKT---TMVCAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVS 209 (236)
T ss_dssp TTTGG-GSCT---TEEEECCSSCBCCTTCTTCEEEEEETTEEEEEEEEEECC
T ss_pred cccCC-cCCc---ceEEecCCCCccCCCCCCCeeEEEECCEEEEEEEEEEeC
Confidence 0111 0111 122221 234579999999853 56 8999998763
No 296
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}
Probab=98.25 E-value=5.2e-05 Score=81.09 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=92.4
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEec-----CCeEEeEEEEEEcCC--
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV-----NREEIPVYPIYRDPV-- 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~-----d~~~~~a~vv~~d~~-- 116 (1108)
.|-+|+|... ....++|.+|+++ +|||+|||+... ...+.+.+. +...+..+-+..||.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAhC~~~~~~~~~~~v~~G~~~~~~~~~~~v~~i~~hp~y~ 79 (232)
T 2oq5_A 12 WPWQASLQWD----------GSHRCGATLINAT--WLVSAAHCFTTYKNPARWTASFGVTIKPSKMKRGLRRIIVHEKYK 79 (232)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECGGGGSSCCCGGGEEEEESSBSTTCSEEEEEEEEEECTTCC
T ss_pred CCeeEEEEeC----------CCeeEEEEEEcCC--EEEECHHHcCCCCCCceEEEEEeeEECCCceEEeEEEEEeCCCCC
Confidence 3667777652 2467999999965 999999999742 234555553 235566666677664
Q ss_pred -----CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CC-CCCC
Q 001280 117 -----HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DA-PHYK 179 (1108)
Q Consensus 117 -----~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~---~~-~~~~ 179 (1108)
+|+||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+.-+.. .. ..|.
T Consensus 80 ~~~~~~DIALl~L~~~~~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~ 158 (232)
T 2oq5_A 80 HPSHDYDISLAELSSPVPYT-NAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYN 158 (232)
T ss_dssp TTCCTTCCEEEEESSCCCCC-SSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHTSTTTTT
T ss_pred CCCCCCCEEEEEecCCCccC-CceeEeECCCccccCCCCCEEEEEECCccCCCCCCCceeeEeEEEEeCHHHcCCccccC
Confidence 699999997532 11 123344443 33456899999999864321 1222223332221 11 0111
Q ss_pred CCCcccccceEEEEe-----eecCCCCCCCceeccc--C--cEEEEeeccc
Q 001280 180 KDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQ--G--RAVALNAGSK 221 (1108)
Q Consensus 180 ~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~--G--~vVGi~~~~~ 221 (1108)
. ...+ .++=+. ...-.|.|||||+-.+ | .++||.+.+.
T Consensus 159 ~-~~~~---~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~ 205 (232)
T 2oq5_A 159 D-AITP---RMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGD 205 (232)
T ss_dssp T-CCCT---TEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECS
T ss_pred C-ccCC---CEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCC
Confidence 1 1111 122221 2345799999998543 3 6999998764
No 297
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.25 E-value=1.4e-06 Score=83.18 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=53.0
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++| |++||.|++|||+++ .+++++.+++++ .++.++|+ +.|+++
T Consensus 43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 103 (117)
T 1v62_A 43 VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS--ISEKVRLE-ILPVPQ 103 (117)
T ss_dssp EEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS--CSSEEEEE-ECCBTT
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEEEE-EEECCC
Confidence 58999999999999999 999999999999999 779999999995 48899998 677765
No 298
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.25 E-value=4.4e-07 Score=84.53 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=52.6
Q ss_pred ceEEEEeecCCCHHhHh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEee
Q 001280 899 QVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGT 970 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~v~v~~ 970 (1108)
..++|..|.++|||+++ |++||+|++|||+++.++.+.+........+ +.+.++|.|+++..+++++.
T Consensus 29 ~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g----~~v~l~v~R~g~~~~~~v~p 97 (103)
T 1wf7_A 29 MPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACT----GSLNMTLQRASAAAKSEPVS 97 (103)
T ss_dssp EEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCS----SEEEEEECCCSCCCCCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEeCCCcCCCCCCC
Confidence 45789999999999999 9999999999999999984333222222234 78999999999876665543
No 299
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.25 E-value=1.8e-06 Score=82.35 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=53.0
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++. .++.++|. +.|++..
T Consensus 50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~~ 111 (117)
T 1ujd_A 50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ--QSGEAEIC-VRLDLNM 111 (117)
T ss_dssp EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC--CSSCEEEE-EESSCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCEEEEE-EEECCcc
Confidence 78999999999999999 99999999999999977 6889999987 47789998 7888763
No 300
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.7e-06 Score=78.64 Aligned_cols=55 Identities=25% Similarity=0.333 Sum_probs=49.2
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeec-CCHHHHHHHHHcCCCCceEEEEEEEe
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT-PDLEAFVNVTKEIEHGEFVRVRTVHL 1065 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v-~~l~~f~~~v~~~~~~~~v~l~~v~r 1065 (1108)
+++|.+|.++|||+++| |++||.|++|||+++ .+++++.+.++.. ++.+.|+ +.|
T Consensus 30 ~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v~~~~~~~~~~l~~~--~~~v~l~-v~~ 86 (91)
T 2e7k_A 30 ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNA--SGSVILK-ILS 86 (91)
T ss_dssp SEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCHHHHHHHHHTC--CSSBCEE-EEC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCHHHHHHHHHcC--CCeEEEE-EEE
Confidence 78999999999999987 999999999999999 9999999999973 5678887 443
No 301
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=98.24 E-value=1.6e-06 Score=82.66 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=50.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++.. .|+.|.|+|.|+++
T Consensus 53 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 115 (117)
T 2byg_A 53 DNSIYV-TKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN-TSEVVYLKVGKPTT 115 (117)
T ss_dssp BCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 467777 69999999999 9 9999999999999999 66666666654 48899999999765
No 302
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.24 E-value=2.2e-06 Score=81.19 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=52.5
Q ss_pred eEEEEEecCCChhhhcCC-CCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYGL-YALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL-~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
+++|..|.++|||+++|| ++||.|++|||+++. +++++.+.++.. +..++|+ +.|+++.
T Consensus 49 gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~~~~ 110 (113)
T 1va8_A 49 SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM--HGTLTFV-LIPSSGP 110 (113)
T ss_dssp SEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC--CEEEEEE-EECCCCC
T ss_pred CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECCcc
Confidence 789999999999999999 999999999999999 788999999874 3578888 6787764
No 303
>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*
Probab=98.24 E-value=2.7e-05 Score=84.43 Aligned_cols=182 Identities=14% Similarity=0.159 Sum_probs=101.8
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~~ 116 (1108)
.|-+|.|... .....++|.+|+++ +|||+|||+.. ...+.|++.. ...+.++-+..||.
T Consensus 12 ~Pw~v~l~~~---------~~~~~CgGsLI~~~--~VLTAAHC~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (250)
T 1aut_C 12 SPWQVVLLDS---------KKKLACGAVLIHPS--WVLTAAHCMDE-SKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPN 79 (250)
T ss_dssp CTTEEEEECT---------TSCEEEEEEEEETT--EEEECGGGSSS-CSCCEEEESCCBTTCCCTTCEEEEEEEEEECTT
T ss_pred CCCEEEEecC---------CCceEEEEEEeeCC--EEEEChHHcCC-CCceEEEEcccccCCCCCccEEEEEEEEEECCC
Confidence 3556776531 12467999999965 99999999984 3345555532 34566666777765
Q ss_pred -------CceEEEEECCCC-cccccccCCCCCCc------ccCCCCEEEEEecCCCCCC----------eEEEEEEEEec
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPLAPE------AACVGLEIRVVGNDSGEKV----------SILAGTLARLD 172 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l~~~------~~~~G~~V~~iG~p~g~~~----------si~~G~is~~~ 172 (1108)
+||||||++..- +. ..+.++.|... ....|+.+.+.|+...... ......+..+.
T Consensus 80 y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~ 158 (250)
T 1aut_C 80 YSKSTTDNDIALLHLAQPATLS-QTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVP 158 (250)
T ss_dssp CBTTTTBTCCEEEEESSCCCCB-TTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEEC
T ss_pred CCCCCCCCcEEEEEECCcccCC-CceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEEEEEec
Confidence 699999997532 21 12344444432 2368999999998643210 12222222221
Q ss_pred CC--CCCCCCCCcccccceEEEE-----eeecCCCCCCCceec-ccCc--EEEEeecccCC---CCcccccChHHHHHHH
Q 001280 173 RD--APHYKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVID-WQGR--AVALNAGSKSS---SASAFFLPLERVVRAL 239 (1108)
Q Consensus 173 ~~--~~~~~~~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n-~~G~--vVGi~~~~~~~---~~~~falPi~~i~~~l 239 (1108)
.. ...|... ..+ .+|=+ ....-.|.|||||+- .+|+ ++||.+.+..- ...+.+.-+...+..+
T Consensus 159 ~~~C~~~~~~~-~~~---~~~Cag~~~~~~~~C~GDSGGPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI 234 (250)
T 1aut_C 159 HNECSEVMSNM-VSE---NMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234 (250)
T ss_dssp HHHHHHHCSSC-CCT---TEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHH
T ss_pred HHHhhHHhccC-CCC---CEEEeCCCCCCCCCCCCCCchheEEEECCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHH
Confidence 10 0001110 111 11222 123557999999985 3564 99999876421 2234455555555665
Q ss_pred HHHHh
Q 001280 240 RFLQE 244 (1108)
Q Consensus 240 ~~l~~ 244 (1108)
+...+
T Consensus 235 ~~~~~ 239 (250)
T 1aut_C 235 HGHIR 239 (250)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 54443
No 304
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.24 E-value=1.7e-06 Score=79.62 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=49.4
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEEEE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGISMT 359 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~~~~ 359 (1108)
.|++| ..|.++|||++ | |++||+|++|||+++.++. ++..++.. .++.+.|+|.|+++..+
T Consensus 30 ~gv~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~~~ 94 (98)
T 2opg_A 30 GAIII-HEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ-TPQRVRLTLYRDEAPYK 94 (98)
T ss_dssp CSEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEECSSCCC
T ss_pred CCEEE-EEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCCCCCc
Confidence 47776 79999999999 9 9999999999999998854 44444443 45899999999887543
No 305
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2
Probab=98.24 E-value=1.3e-05 Score=85.61 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=91.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|.|.... ......++|.+|+++ +|||+|||+.. .+.+++. ....+..+-+..||.
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGsLI~~~--~VLTAAHC~~~---~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (227)
T 1euf_A 12 RPYMAFLLFKT-------SGKSHICGGFLVRED--FVLTAAHCLGS---SINVTLGAHNIMERERTQQVIPVRRPIPHPD 79 (227)
T ss_dssp CTTEEEEEEES-------SSSEEEEEEEEEETT--EEEECGGGCCE---EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred cCCEEEEEEeC-------CCCceEEEEEEeeCC--EEEECHHHCCC---CcEEEEcccccCCCCCccEEEEEEEEEeCCC
Confidence 36678886531 111457999999965 99999999983 3555543 135566666677765
Q ss_pred -------CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCC
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYK 179 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~~~ 179 (1108)
+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+... ...|+
T Consensus 80 y~~~~~~~DIALl~L~~~~~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~ 158 (227)
T 1euf_A 80 YNDETLANDIMLLKLTRKADIT-DKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFK 158 (227)
T ss_dssp CCTTTCTTCCEEEEESSCCCCC-SSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTTCT
T ss_pred CCCCCCcCceEEEEECCcCcCC-CceeccCCCCccccCCCCCEEEEEEEccCCCCCCCchhheEeEeccccHHHhhHhhc
Confidence 699999997532 21 123444443 23457899999999864221 12222222222110 01121
Q ss_pred CCCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeecc
Q 001280 180 KDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGS 220 (1108)
Q Consensus 180 ~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~ 220 (1108)
.. ..+ ..|=+. .....|.|||||+- +|.++||.+.+
T Consensus 159 ~~-~~~---~~~Ca~~~~~~~~~~~GDsGgPL~~-~~~l~Gi~S~g 199 (227)
T 1euf_A 159 NY-IPF---TQICAGDPSKRKNSFSGDSGGPLVC-NGVAQGIVSYG 199 (227)
T ss_dssp TC-CTT---TEEEESCTTSCCBCCTTCTTCEEEE-TTEEEEEEEEC
T ss_pred Cc-CCC---cEEEccCCCCCCcccccCCCCceEE-CCEEEEEEEEe
Confidence 10 111 122221 11227999999996 67999999876
No 306
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0
Probab=98.24 E-value=3.4e-06 Score=89.96 Aligned_cols=184 Identities=18% Similarity=0.226 Sum_probs=99.3
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-CeEEEEEec--------CCeEEeEEEEEEc--
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFV--------NREEIPVYPIYRD-- 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~~v~~~--------d~~~~~a~vv~~d-- 114 (1108)
.|-+|.|.... ......++|.+|+++ +|||+|||+... ...+.+.+. .+..+..+-+..+
T Consensus 11 ~Pw~v~l~~~~-------~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~v~~g~~~~~~~~~~~~~~v~~i~~h~y 81 (228)
T 3h7o_A 11 VPWTVAVRTYP-------GEESLTCGGAILSQW--FVLTAAHCVFDQKPETIVIQYESTNLWEDPGKSDPYVSHVYLSFY 81 (228)
T ss_dssp STTEEEEEECG-------GGCCEEEEEEESSSS--EEEECHHHHTTSCGGGCEEEESCSBTTTBCCEEECCEEEEEESSC
T ss_pred CCeEEEEeecC-------CCCceEeeeEEeeCC--EEEEcHHhcccCCCCcEEEEecccccccCCCceeeeEEEEEcccc
Confidence 46778887631 011237999999964 999999999532 234445443 1233344444443
Q ss_pred ----CCCceEEEEECCC-CcccccccCCCCCCc--ccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCC
Q 001280 115 ----PVHDFGFFRYDPS-AIQFLNYDEIPLAPE--AACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKK 180 (1108)
Q Consensus 115 ----~~~DlAlLk~d~~-~~~~~~~~~l~l~~~--~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~~~~ 180 (1108)
..+|||||+++.. .+....+.++.|... .+..|+.+.+.|+..... .......+..+... ...|+.
T Consensus 82 ~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~ 161 (228)
T 3h7o_A 82 RQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGP 161 (228)
T ss_dssp BTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCCCCTTCEEEEEECCCSSCSCGGGGBCEEEEEEEECHHHHHHHHTT
T ss_pred CCCCccCCEEEEEECCcccccccccccccCCccccCCCCCCeeEEEEEecCCCCCCcccccccceeEEEcHHHHHHHhcC
Confidence 2369999999743 221112344444433 378899999999864322 11222223322210 000111
Q ss_pred CCcccccceEEEEe---eecCCCCCCCceecccCcEEEEeecccCC--CCcccccChHHHHHHHHHH
Q 001280 181 DGYNDFNTFYMQAA---SGTKGGSSGSPVIDWQGRAVALNAGSKSS--SASAFFLPLERVVRALRFL 242 (1108)
Q Consensus 181 ~~~~~~~~~~i~~~---a~~~~G~SGgPv~n~~G~vVGi~~~~~~~--~~~~falPi~~i~~~l~~l 242 (1108)
....+ .++-+. ...-.|.|||||+. +++++||.+.+..- ...+.+.-+...+..+++.
T Consensus 162 ~~~~~---~~~Ca~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~~p~vyt~v~~~~~WI~~~ 224 (228)
T 3h7o_A 162 IFLSL---QVFCAQKVGVSLESGDAGDPTVQ-QDTLVGVAAYFPKRPEGAPEVFTKVGSYVSWIQDI 224 (228)
T ss_dssp SCCCS---SEEEEECTTCCCCGGGTTCEEEE-TTEEEEEECCCTTCCTTCCEEEEEGGGTHHHHHHH
T ss_pred ccCCc---eEEecCCCCCcCCCCCCCCccee-cCeEEEEEeecCcCCCCCCcEEEEHHHHHHHHHHH
Confidence 00111 112111 33456999999996 67899999876432 1233445555555555443
No 307
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.24 E-value=2.5e-06 Score=103.77 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=60.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEE-cccc
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNL-VQDL 366 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~v-~~~~ 366 (1108)
.|++| ..|.++|||++ ||++||+|++|||++| +..++..++.. .+|++|+|+|.|+|+.+++++ +...
T Consensus 496 ~gv~V-~~V~~~spA~~AGL~~GD~I~aInG~~v-~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 566 (597)
T 4fgm_A 496 QGLDV-LNVYHDESAYHAGLSAGDKIIAIDHLQA-TEQSVKRILERYIPGDTVTIHAFRRDELMTLELTWQEP 566 (597)
T ss_dssp TEEEE-EEECTTSHHHHHTCCTTCEEEEETTEEC-CTTTHHHHHTTCCTTCEEEEEEEETTEEEEEEEECCCC
T ss_pred CeEEE-EEeCCCChHHHCCCCCCCEEEEECCEEC-CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEecCC
Confidence 45555 79999999999 9999999999999999 58899998864 789999999999999999998 7654
No 308
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...
Probab=98.24 E-value=2.3e-05 Score=84.42 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=92.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcC-
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDP- 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~- 115 (1108)
.|-+|+|.... .......++|.+|+++ +|||+|||+.. ...+.|.+.. .+.+.++-+..||
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGsLI~~~--~VLTAAHC~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 82 (240)
T 1gvk_B 12 WPSQISLQYRS------GSSWAHTCGGTLIRQN--WVMTAAHCVDR-ELTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPY 82 (240)
T ss_dssp CTTEEEEEEEE------TTEEEEEEEEEEEETT--EEEECGGGGCS-CCCEEEEESCSBTTSCCSCCEEEEEEEEEECTT
T ss_pred cCEEEEEEecC------CCccCceEEEEEeeCC--EEEECHHHCCC-CcceEEEECCeecccCCCcceEEEEEEEEECCC
Confidence 46678886421 0101357999999965 99999999984 3455666532 3456666677776
Q ss_pred --------CCceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CCC
Q 001280 116 --------VHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DAP 176 (1108)
Q Consensus 116 --------~~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~---~~~ 176 (1108)
.+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+.. ...
T Consensus 83 y~~~~~~~~~DIALl~L~~~v~~~-~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (240)
T 1gvk_B 83 WNTDDVAAGYDIALLRLAQSVTLN-SYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSS 161 (240)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCB-TTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHHTST
T ss_pred CCCCCCCCCCcEEEEEECCccccC-CCccceecCCCCCCCCCCCEEEEEecCcCCCCCCcchhccEEEEEEEcHHHhccc
Confidence 5699999997532 21 123333333 33467899999999864321 1122222222211 100
Q ss_pred -CCCCCCcccccceEEEEe----eecCCCCCCCceec-ccC--cEEEEeeccc
Q 001280 177 -HYKKDGYNDFNTFYMQAA----SGTKGGSSGSPVID-WQG--RAVALNAGSK 221 (1108)
Q Consensus 177 -~~~~~~~~~~~~~~i~~~----a~~~~G~SGgPv~n-~~G--~vVGi~~~~~ 221 (1108)
.++. ...+ .+|=+. ...-.|.|||||+- .+| .++||.+.+.
T Consensus 162 ~~~~~-~~~~---~~~Ca~~~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~ 210 (240)
T 1gvk_B 162 SYWGS-TVKN---SMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVS 210 (240)
T ss_dssp TTTGG-GCCT---TEEEECCSSSCBCCTTCTTCEEEEEETTEEEEEEEEEECB
T ss_pred cccCc-cCCc---ceEeecCCCCCcccCCCCcCceEEEECCcEEEEEEEEEeC
Confidence 0111 0111 122221 23457999999984 356 8999998763
No 309
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2
Probab=98.24 E-value=3.6e-06 Score=89.61 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=93.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEec------CCeEEeEEEEEEcCC-
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV------NREEIPVYPIYRDPV- 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~------d~~~~~a~vv~~d~~- 116 (1108)
.|-+|+|... ....++|.+|+++ +|||+||++... ...+.+.+. +++.+..+-+..||.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~~~~hp~y 79 (222)
T 1eq9_A 12 YPYQVSLRLS----------GSHRCGASILDNN--NVLTAAHCVDGLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKNY 79 (222)
T ss_dssp CTTEEEEEET----------TEEEEEEEECSSS--EEEECHHHHTTCSCGGGEEEEESCSBTTSCCEEEEEEEEEECTTC
T ss_pred cceEEEEEeC----------CCeEEEEEEeeCC--EEEEhhhcCCCCCCCceEEEEECceecCCCCeEEEEEEEEECCCC
Confidence 3667887642 2467999999964 999999999743 244566653 345677777777764
Q ss_pred ------CceEEEEECCCC-cccccccCCCCCCccc-CCCCEEEEEecCCCCC-----CeEEEEEEEEecCCC---CCCCC
Q 001280 117 ------HDFGFFRYDPSA-IQFLNYDEIPLAPEAA-CVGLEIRVVGNDSGEK-----VSILAGTLARLDRDA---PHYKK 180 (1108)
Q Consensus 117 ------~DlAlLk~d~~~-~~~~~~~~l~l~~~~~-~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~~---~~~~~ 180 (1108)
+|||||+++..- +. ..+.++.|..... ..|+.+.+.|+..... .......+.-+.... ..|+
T Consensus 80 ~~~~~~~DIALl~L~~~v~~~-~~v~picL~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~- 157 (222)
T 1eq9_A 80 DDFLLRNDVALVHLTNPIKFN-DLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR- 157 (222)
T ss_dssp BTTTTBCCCEEEEESSCCCCB-TTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSSS-
T ss_pred CCCCCCCCEEEEEECCccccC-CceEccCCCCCCcCCCCCEEEEEcccccCCCCcccchheEeEEEEeCHHHhCcccCC-
Confidence 699999997532 11 1234444443332 6799999999864321 112222222222100 1111
Q ss_pred CCcccccceEEEEe----eecCCCCCCCceecccCcEEEEeeccc
Q 001280 181 DGYNDFNTFYMQAA----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1108)
Q Consensus 181 ~~~~~~~~~~i~~~----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1108)
..+ .++-+. ...-.|+|||||+- +|.++||.+.+.
T Consensus 158 --~~~---~~~Ca~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~ 196 (222)
T 1eq9_A 158 --VID---SHICTLTKRGEGACHGDSGGPLVA-NGAQIGIVSFGS 196 (222)
T ss_dssp --CCT---TEEEECCCTTCBCCTTCTTCEEEE-TTEEEEEEEECS
T ss_pred --CCc---cEEeecCCCCCeeeeCCccceEEE-CCEEEEEEEECC
Confidence 111 122221 23457999999996 579999998764
No 310
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.23 E-value=1e-06 Score=82.03 Aligned_cols=60 Identities=25% Similarity=0.401 Sum_probs=50.8
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC-CCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG-VDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~-~g~~v~l~V~R~g~ 356 (1108)
..+++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++... .|+.|.|+|.|++.
T Consensus 33 ~~~~~V-~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 97 (103)
T 1uep_A 33 GQPILI-GAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97 (103)
T ss_dssp TSCCBE-EEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCeEE-EEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence 467776 69999999999 9 99999999999999965 77777777554 37899999999764
No 311
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.23 E-value=2.3e-06 Score=77.74 Aligned_cols=59 Identities=31% Similarity=0.419 Sum_probs=48.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+++.+. .++..++. ..++.+.|+|.|.+.
T Consensus 28 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~~ 90 (92)
T 2qg1_A 28 DTGVFV-SDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK-CSLGTVTLEVGRIST 90 (92)
T ss_dssp SCSCEE-EEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEECCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEcccc
Confidence 468887 69999999999 9 999999999999999875 44444443 357889999999764
No 312
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.23 E-value=2.1e-06 Score=81.98 Aligned_cols=60 Identities=20% Similarity=0.354 Sum_probs=50.5
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++... +++|.|+|.|+|+.
T Consensus 52 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~g~~ 115 (117)
T 2fne_A 52 DLPIYV-KTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KGTVTLMVLSSDET 115 (117)
T ss_dssp EEEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEECSCE
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCcc
Confidence 356676 79999999999 8 9999999999999999 677777777553 45699999998874
No 313
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.23 E-value=2.8e-06 Score=79.46 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=52.4
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++. +++++...++. .++.++|. +.|++.
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~ 99 (106)
T 3axa_A 38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR--TSSVVTLE-VAKQGA 99 (106)
T ss_dssp EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT--CCSEEEEE-EECCCS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCc
Confidence 489999999999999999 9999999999999998 47888888876 48889998 677775
No 314
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.23 E-value=9.9e-07 Score=84.60 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=52.6
Q ss_pred eEEEEEecCCChhhhc-CCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeEE
Q 001280 1008 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPR 1070 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~~ 1070 (1108)
+++|..|.++|||+++ ||++||.|++|||+++.+ +++++..++.. +..++|+ +.|+|...
T Consensus 54 ~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~g~~~ 116 (120)
T 2iwo_A 54 PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA--SGSIEMQ-VVAGGDVS 116 (120)
T ss_dssp EEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC--CSEEEEE-EECCTTSS
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECCccc
Confidence 7899999999999999 999999999999999987 68888888874 5559998 78887653
No 315
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.23 E-value=6.1e-07 Score=85.88 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=53.3
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCeEE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKPR 1070 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~~~ 1070 (1108)
.+++|..|.++|||+++| |++||.|++|||+++. +++++...++..+ ++.+.+. +.|+++.+
T Consensus 42 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~-~~~~~l~-v~R~~~~~ 106 (119)
T 1x6d_A 42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR-EPRQAVI-VTRKLTPE 106 (119)
T ss_dssp SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT-SSSEEEE-EEECCCSS
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CCeEEEE-EEcCCCcc
Confidence 378999999999999999 9999999999999999 6899999998855 6656666 67887643
No 316
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.23 E-value=1.9e-06 Score=80.72 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=48.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++. ..++.+.|+|.|+++
T Consensus 31 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~-~~~~~v~l~v~R~~~ 93 (106)
T 4amh_A 31 DNSIYV-TKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALK-NTSDFVYLKVAKPGS 93 (106)
T ss_dssp BCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH-SCCSEEEEEEECCSS
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHh-CCCCeEEEEEEeCCC
Confidence 457777 79999999999 9 99999999999999976 455555554 457799999999875
No 317
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*
Probab=98.23 E-value=9.6e-06 Score=87.22 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=99.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-------CeEEEEEec----------CCeEEeE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-------PVVAEAMFV----------NREEIPV 108 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-------~~~~~v~~~----------d~~~~~a 108 (1108)
.|-+|.|... .....++|.+|+++ +|||+|||+... .....+.+. ..+.+.+
T Consensus 12 ~Pw~v~l~~~---------~~~~~CgGtLI~~~--~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v 80 (241)
T 3ncl_A 12 WPWQVSLHAL---------GQGHICGASLISPN--WLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRL 80 (241)
T ss_dssp STTEEEEEET---------TTEEEEEEEECSSS--EEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEEE
T ss_pred CCcEEEEEcC---------CCceEEEEEEeeCC--EEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEEE
Confidence 4567777652 12357999999965 999999999642 233455442 2356777
Q ss_pred EEEEEcC-------CCceEEEEECCCC-cccccccCCCC--CCcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC
Q 001280 109 YPIYRDP-------VHDFGFFRYDPSA-IQFLNYDEIPL--APEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR 173 (1108)
Q Consensus 109 ~vv~~d~-------~~DlAlLk~d~~~-~~~~~~~~l~l--~~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~ 173 (1108)
+-+..|| .+||||||++..- +. ..+.++.| ....+..|+.+.+.|+..... .......+..+..
T Consensus 81 ~~i~~hp~y~~~~~~~DIALl~L~~~~~~~-~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~ 159 (241)
T 3ncl_A 81 KRIISHPFFNDFTFDYDIALLELEKPAEYS-SMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQ 159 (241)
T ss_dssp EEEEECTTCCTTTCTTCCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCH
T ss_pred EEEEECCCCCCCCCCCcEEEEEECCCCccc-CccCceEcCCcccCCCCCCEEEEEEecccCCCCCcCceeeEEeEEEECH
Confidence 7778887 4699999997532 11 12333333 334456899999999853221 1122222222211
Q ss_pred CC--CCCCCCCcccccceEEEE-----eeecCCCCCCCcee--cccCc--EEEEeecccCC---CCcccccChHHHHHHH
Q 001280 174 DA--PHYKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVI--DWQGR--AVALNAGSKSS---SASAFFLPLERVVRAL 239 (1108)
Q Consensus 174 ~~--~~~~~~~~~~~~~~~i~~-----~a~~~~G~SGgPv~--n~~G~--vVGi~~~~~~~---~~~~falPi~~i~~~l 239 (1108)
.. ..|.. ...+ .++=+ ....-.|.|||||+ +.+|+ ++||.+.+..- ..-+.+..+...+..+
T Consensus 160 ~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI 235 (241)
T 3ncl_A 160 TTCENLLPQ-QITP---RMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235 (241)
T ss_dssp HHHHHHSTT-TCCT---TEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHH
T ss_pred HHhhhhccc-CCCC---CeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHH
Confidence 00 00111 0111 11221 12345799999997 34565 89999876432 1223344444444444
Q ss_pred H
Q 001280 240 R 240 (1108)
Q Consensus 240 ~ 240 (1108)
+
T Consensus 236 ~ 236 (241)
T 3ncl_A 236 K 236 (241)
T ss_dssp H
T ss_pred H
Confidence 3
No 318
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.22 E-value=1.5e-06 Score=81.61 Aligned_cols=61 Identities=26% Similarity=0.411 Sum_probs=51.2
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC--CCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG--VDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~--~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++... .+..|.|+|.|.++.
T Consensus 32 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~~ 98 (108)
T 3cbz_A 32 DGGIYI-GSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGG 98 (108)
T ss_dssp CCEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC-
T ss_pred CCCEEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCCC
Confidence 467776 79999999999 9 99999999999999999 88888888544 345699999997654
No 319
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.22 E-value=2e-06 Score=79.67 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=48.9
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.++ .++..++.. .|+.+.|+|.|+++
T Consensus 36 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 36 DSGIYV-SRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHRLE 98 (101)
T ss_dssp BCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT-CCSEEEEEEEEESC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 467777 79999999999 9 999999999999999886 444444443 58899999999775
No 320
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Probab=98.22 E-value=1.4e-05 Score=86.18 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=92.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-CeEEEEEec--------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFV--------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~~v~~~--------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|+|.... ......++|.+|+++ +|||+|||+... +..+.+.+. +.+.+.++-+..||.
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~ 82 (241)
T 1m9u_A 12 FPWQLSQQRQS-------GSWSHSCGASLLSST--SALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSYTMHEN 82 (241)
T ss_dssp STTEEEEEEES-------SSEEEEEEEEECSSS--EEEECHHHHTTCCGGGEEEEESCSBTTCCTTCEEEEEEEEEECTT
T ss_pred cCeEEEEEecC-------CceeeeeEEEEEeCC--EEEecHHhCCCCCcceEEEEEEeecCCCCCCceEEEEEEEEeCCC
Confidence 35678877631 112367999999965 999999999742 344666653 245677777777776
Q ss_pred C---------ceEEEEECCCC-cccccccCCCCCCc--ccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCC
Q 001280 117 H---------DFGFFRYDPSA-IQFLNYDEIPLAPE--AACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APH 177 (1108)
Q Consensus 117 ~---------DlAlLk~d~~~-~~~~~~~~l~l~~~--~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~ 177 (1108)
+ |||||+++..- +. ..+.++.|... ....|+.+.+.|+..... .......+..+... ...
T Consensus 83 y~~~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (241)
T 1m9u_A 83 YGAGTASYSNDIAILHLATSISLG-GNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAA 161 (241)
T ss_dssp TTCSSSTTTTCCEEEEESSCCCCC-SSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHH
T ss_pred cCCCCCcccccEEEEEecCccccC-CCccccCcCCCcCCCCCCCEEEEEeCcccCCCCCcccceeEeeEEEEcHHHhhhh
Confidence 5 99999997532 11 12344444322 223899999999864322 11222222221110 000
Q ss_pred CCCCCcccccceEEEEe-----eecCCCCCCCceecccC--cEEEEeec
Q 001280 178 YKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQG--RAVALNAG 219 (1108)
Q Consensus 178 ~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G--~vVGi~~~ 219 (1108)
|............|-+. ...-.|.|||||+-.+| .++||.+.
T Consensus 162 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~l~Gi~S~ 210 (241)
T 1m9u_A 162 MVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPDGGTRVVGVTSW 210 (241)
T ss_dssp HTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEESSSEEEEEEEEE
T ss_pred hcccCCCcccCCcEEECcCCCCCeeecCcCCccEEEeCCCEEEEEEEEE
Confidence 10000000001122221 23456999999986445 89999987
No 321
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.22 E-value=1.2e-06 Score=82.38 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=54.1
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.|++|..|.++|||+++| |++||.|++|||+++. ++.++...++. . ++.++|. +.|++.+
T Consensus 42 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~-g~~v~l~-v~R~~~~ 104 (108)
T 1q7x_A 42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-T-GQVVHLL-LEKGQSP 104 (108)
T ss_dssp CCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-T-TSEEEEE-EECCCCS
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C-CCeEEEE-EEeCCcc
Confidence 488999999999999999 9999999999999999 77899999987 3 7889998 7888764
No 322
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=98.22 E-value=2.7e-06 Score=80.50 Aligned_cols=59 Identities=27% Similarity=0.398 Sum_probs=51.5
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++. .++.++|. +.|++..
T Consensus 50 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~~ 111 (112)
T 2r4h_A 50 DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN--GGRRVRLF-LKRGETS 111 (112)
T ss_dssp CEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHT--TTTEEEEE-EECCEEE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcc
Confidence 78999999999999999 99999999999999977 5788888876 37889998 6777653
No 323
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.21 E-value=2.8e-06 Score=77.02 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=46.3
Q ss_pred EEEEecCCChhhhcCCCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEE
Q 001280 1010 YVARWCHGSPVHRYGLYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVR 1061 (1108)
Q Consensus 1010 ~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~ 1061 (1108)
+|++|.++|||+++||++||.|++|||+++ .+++++.+.+++ .++.++|+
T Consensus 34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~g~~v~l~ 85 (90)
T 1y7n_A 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN--AVGEIHMK 85 (90)
T ss_dssp EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHH--CCEEEEEE
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE
Confidence 799999999999999999999999999999 589999999996 37888887
No 324
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.21 E-value=1.4e-06 Score=84.54 Aligned_cols=63 Identities=25% Similarity=0.371 Sum_probs=55.6
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISMT 359 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~ 359 (1108)
..|++| ..|.++|||++ ||++||+|++|||+.+.+ +.++..++....++.+.++|.|+|+..+
T Consensus 32 ~~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~~~~ 97 (128)
T 2kjd_A 32 KPGQFI-RSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFF 97 (128)
T ss_dssp SCSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHHHHH
T ss_pred CCCEEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCcceE
Confidence 357777 69999999999 999999999999999999 9999998877677889999999887654
No 325
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.21 E-value=2.3e-06 Score=77.79 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=49.7
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.++ +++...++. .++.++|. +.|.+
T Consensus 29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~ 89 (92)
T 2qg1_A 29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC--SLGTVTLE-VGRIS 89 (92)
T ss_dssp CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH--CCSEEEEE-EECCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEccc
Confidence 378999999999999999 999999999999999774 777777776 36779888 66655
No 326
>2jde_A Urokinase-type plasminogen activator; plasminogen activation, EGF-like domain, blood coagulation, inhibitor complex, UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Probab=98.21 E-value=5.8e-05 Score=82.98 Aligned_cols=186 Identities=11% Similarity=0.123 Sum_probs=103.2
Q ss_pred hCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEec---------CCeEEeEEEEEE
Q 001280 45 VVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYR 113 (1108)
Q Consensus 45 ~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~---------d~~~~~a~vv~~ 113 (1108)
-.|-+|.|.... ........++|.+|+++ +|||+|||+... .....+.+. ....+.++-+..
T Consensus 34 ~~Pw~v~l~~~~-----~~~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~ 106 (276)
T 2jde_A 34 NQPWFAAIYRRH-----RGGSVTYVCGGSLMSPC--WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLIL 106 (276)
T ss_dssp GSTTEEEEEEEC-----CCCCEEEEEEEEEEETT--EEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEE
T ss_pred CCCeEEEEEEec-----CCCccceeeeeEEeeCC--EEEEcHHhccCCCCcccEEEEecccccCCCCCCcEEEEEEEEEE
Confidence 357788887642 11111357999999965 999999999742 233555543 134566776777
Q ss_pred cCC---------CceEEEEECCC----CcccccccCCCCC--CcccCCCCEEEEEecCCCCC------CeEEEEEEEEec
Q 001280 114 DPV---------HDFGFFRYDPS----AIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLD 172 (1108)
Q Consensus 114 d~~---------~DlAlLk~d~~----~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~ 172 (1108)
||. +|||||+++.. ......+.++.|. ...+..|+.+.+.|+..... .......+..+.
T Consensus 107 hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~ 186 (276)
T 2jde_A 107 HKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLIS 186 (276)
T ss_dssp CTTCEECSSCEESCCEEEEEECTTSCCCCCBTTBCCCBCCBTTBCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEEC
T ss_pred CCCCCCCCCcCCCcEEEEEeCCccccccccCCceEccCCCCcccCCCCCCEEEEEECCccCCCCcccchhhhhceecccC
Confidence 764 49999999754 1111123444443 35667899999999864321 112222222222
Q ss_pred C---CCC-CCCCCCcccccceEEEEe-----eecCCCCCCCceec-ccC--cEEEEeecccCC---CCcccccChHHHHH
Q 001280 173 R---DAP-HYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVID-WQG--RAVALNAGSKSS---SASAFFLPLERVVR 237 (1108)
Q Consensus 173 ~---~~~-~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n-~~G--~vVGi~~~~~~~---~~~~falPi~~i~~ 237 (1108)
. ... .++. ...+ .+|=+. ...-.|.|||||+- .+| .++||.+.+..- ...+.+..+...+.
T Consensus 187 ~~~C~~~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~ 262 (276)
T 2jde_A 187 HRECQQPHYYGS-EVTT---KMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLP 262 (276)
T ss_dssp HHHHTSTTTTGG-GSCT---TEEEEECTTSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHH
T ss_pred hHHhCcccccCc-cCCC---CeEEecCCCCCCcccccccCcceEEEeCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHH
Confidence 1 111 1111 1111 122221 23457999999984 344 599999876422 12344455555555
Q ss_pred HHHH
Q 001280 238 ALRF 241 (1108)
Q Consensus 238 ~l~~ 241 (1108)
.+++
T Consensus 263 WI~~ 266 (276)
T 2jde_A 263 WIRS 266 (276)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 327
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.21 E-value=1.4e-06 Score=82.81 Aligned_cols=59 Identities=24% Similarity=0.297 Sum_probs=53.4
Q ss_pred eEEEEEecCCChhhh-cCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHR-YGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~-~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
+++|..|.++|||++ +||++||.|++|||+++.+ ++++.++++. .++.+.|+ +.|+++.
T Consensus 44 ~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~~ 105 (114)
T 1uew_A 44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD--AGLSVTLR-IIPQEEL 105 (114)
T ss_dssp SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH--TTTEEEEE-ECCCSCC
T ss_pred CeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcC
Confidence 459999999999999 9999999999999999999 6999999997 48899998 7777754
No 328
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.21 E-value=3.2e-06 Score=78.33 Aligned_cols=57 Identities=21% Similarity=0.377 Sum_probs=49.9
Q ss_pred CceEEEEEecCCCcccc--CCCCCCEEEEECCEEe--CChhHHHHHHhc-CCCCeEEEEEEEC
Q 001280 297 TGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVI--TQFLKLETLLDD-GVDKNIELLIERG 354 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v--~~~~~l~~~l~~-~~g~~v~l~V~R~ 354 (1108)
.+++| ..|.++|||++ +|++||+|++|||+.+ .++.++..++.. ..|+.|+|+|.|.
T Consensus 37 ~~~~V-~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 37 PTAVI-ANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CCEEE-EEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred cCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 35665 79999999998 5999999999999999 889999999866 4789999999874
No 329
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.21 E-value=2.8e-06 Score=77.42 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=49.8
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
+++|.++.++|||+++| |++||.|++|||+++ .+++++.+.++..+ ..++|+ +.+.
T Consensus 29 ~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~-v~~~ 87 (93)
T 3o46_A 29 AIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ--GAITFK-IIPG 87 (93)
T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC--EEEEEE-EECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC--CeEEEE-EEeC
Confidence 78999999999999999 999999999999999 89999999999854 378887 4443
No 330
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.21 E-value=2.7e-06 Score=82.54 Aligned_cols=58 Identities=17% Similarity=0.325 Sum_probs=52.2
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
|++|+.|.++|||+++| |++||.|++|||+++ .+++++.++++.. +..++|. +.|+++
T Consensus 66 gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~~~ 126 (128)
T 1nf3_C 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIAN--SRNLIIT-VRPANQ 126 (128)
T ss_dssp EEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHT--TTSEEEE-EECCCC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECCc
Confidence 79999999999999999 899999999999999 8899999999863 4569998 677775
No 331
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.21 E-value=2.7e-06 Score=77.41 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=44.9
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVR 1061 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~ 1061 (1108)
++++|..|.++|||+++||++||.|++|||+++. +++++.+++++ ..++|+
T Consensus 35 ~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~----~~l~lt 87 (94)
T 3kzd_A 35 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ----PSLGLL 87 (94)
T ss_dssp CEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS----SEEEEE
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC----CeEEEE
Confidence 4899999999999999999999999999999999 47999999884 346655
No 332
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Probab=98.21 E-value=6e-05 Score=81.43 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=102.7
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCC--eEEEEEecC---------CeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP--VVAEAMFVN---------REEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~--~~~~v~~~d---------~~~~~a~vv~~d 114 (1108)
.|-+|.|... ...++|.+|+++ +|||+|||+.... ..+.|.+.. ...+..+-+..+
T Consensus 12 ~Pw~v~l~~~-----------~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~h 78 (248)
T 2r0l_A 12 HPWLAAIYIG-----------DSFCAGSLVHTC--WVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPY 78 (248)
T ss_dssp STTEEEEEET-----------TEEEEEEEEETT--EEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEEC
T ss_pred CCeEEEEEcC-----------CceEEEEEEcCC--EEEECHHHcCCCCCcCcEEEEEEeEEcCCCCCccEEEeeeEEEeC
Confidence 3567777541 357999999965 9999999997542 456666542 345666655555
Q ss_pred C--------CCceEEEEECCCC---ccc-ccccCCCCCC--cccCCCCEEEEEecCCCCC------CeEEEEEEEEecC-
Q 001280 115 P--------VHDFGFFRYDPSA---IQF-LNYDEIPLAP--EAACVGLEIRVVGNDSGEK------VSILAGTLARLDR- 173 (1108)
Q Consensus 115 ~--------~~DlAlLk~d~~~---~~~-~~~~~l~l~~--~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~- 173 (1108)
| .+||||||++... +.+ ..+.++.|.. ..+..|+.+.+.|+..... .......+..+..
T Consensus 79 p~y~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~ 158 (248)
T 2r0l_A 79 TLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADH 158 (248)
T ss_dssp TTCCTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEBCCHH
T ss_pred CccCcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEEEEeeeCHH
Confidence 4 3699999997541 211 1234444433 4567899999999864321 1222222222221
Q ss_pred --CC-CCCCCCCcccccceEEEE-----eeecCCCCCCCceecc-cC--cEEEEeecccCC---CCcccccChHHHHHHH
Q 001280 174 --DA-PHYKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRAL 239 (1108)
Q Consensus 174 --~~-~~~~~~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falPi~~i~~~l 239 (1108)
.. ..|+. ...+ .+|=+ ....-.|.|||||+-. +| .++||.+.+..- ...+.+..+...+..+
T Consensus 159 ~C~~~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI 234 (248)
T 2r0l_A 159 KCSSPEVYGA-DISP---NMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWI 234 (248)
T ss_dssp HHTSTTTTGG-GCCT---TEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHH
T ss_pred HhCCccccCC-cCCC---CEEeECCCCCCCcCCCCccCCeEEEEECCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHH
Confidence 10 01111 0111 12222 1234579999999854 45 599999876421 2234445555555655
Q ss_pred HHHH
Q 001280 240 RFLQ 243 (1108)
Q Consensus 240 ~~l~ 243 (1108)
++..
T Consensus 235 ~~~~ 238 (248)
T 2r0l_A 235 NDRI 238 (248)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 333
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2
Probab=98.21 E-value=5.4e-05 Score=81.57 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=93.9
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~~ 116 (1108)
.|-+|+|.... .......++|.+|+++ +|||+|||+. ......|.+.. ...+.++-+..||.
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLI~~~--~VLTAAHC~~-~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 82 (241)
T 1bru_P 12 WPWQVSLQYDS------SGQWRHTCGGTLVDQS--WVLTAAHCIS-SSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQD 82 (241)
T ss_dssp STTEEEEEEEE------TTEEEEEEEEEEEETT--EEEECGGGCC-TTSCEEEEESCSBSSSCCTTCEEEEEEEEEECTT
T ss_pred cCcEEEEEEec------CCceeeEEEeEEeeCC--EEEEcHHhcc-cCCceEEEEEcccccCCCCccEEEEEEEEEECCC
Confidence 36678887632 1111357999999965 9999999998 33456666542 34566666677764
Q ss_pred ---------CceEEEEECCC-CcccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CCC
Q 001280 117 ---------HDFGFFRYDPS-AIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DAP 176 (1108)
Q Consensus 117 ---------~DlAlLk~d~~-~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~---~~~ 176 (1108)
+||||||++.. .+. ..+.++.|. ...+..|+.+.+.|+..... .......+..+.. ...
T Consensus 83 y~~~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~ 161 (241)
T 1bru_P 83 WNSNQLSNGNDIALLKLASPVSLT-DKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKP 161 (241)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHHTST
T ss_pred CCCCCCCCCCcEEEEEeCCCcccC-CccCCcccCCCcCCCCCCCEEEEEEccccCCCCCCCccceeCEEEEecHHHhCcc
Confidence 79999999753 221 123343333 33467899999999864321 1222223333321 110
Q ss_pred -CCCCCCcccccceEEEEe----eecCCCCCCCceecc--cC--cEEEEeeccc
Q 001280 177 -HYKKDGYNDFNTFYMQAA----SGTKGGSSGSPVIDW--QG--RAVALNAGSK 221 (1108)
Q Consensus 177 -~~~~~~~~~~~~~~i~~~----a~~~~G~SGgPv~n~--~G--~vVGi~~~~~ 221 (1108)
.|+. ... ..+|=+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 162 ~~~~~-~~~---~~~~Ca~~~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~ 211 (241)
T 1bru_P 162 GWWGS-TVK---TNMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGS 211 (241)
T ss_dssp TTTGG-GCC---TTEEEECCSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECB
T ss_pred cccCC-cCC---CceEeecCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcC
Confidence 1111 011 1122221 234569999999843 56 8999998764
No 334
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.20 E-value=1.2e-06 Score=82.87 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=49.1
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRT 1062 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~ 1062 (1108)
+++|..+.++|||+++||++||.|++|||+++. +++++.+.++..+ ++.+.|++
T Consensus 37 ~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~-~~~v~l~V 92 (111)
T 1vae_A 37 PVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFG-GEEVEMKV 92 (111)
T ss_dssp SCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTT-TSEECEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CceEEEEE
Confidence 568999999999999999999999999999999 9999999999865 66788874
No 335
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.20 E-value=1.4e-06 Score=82.96 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=53.1
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. ++.++|. +.|++..
T Consensus 43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~~~~ 105 (116)
T 2dm8_A 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT--PQKVRLV-VYRDEAH 105 (116)
T ss_dssp SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTC--CSEEEEE-EECCSSC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEeCCcc
Confidence 389999999999999999 99999999999999988 78999888863 4789998 7888764
No 336
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.20 E-value=1.4e-06 Score=83.71 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=52.5
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC-CCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG-VDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~-~g~~v~l~V~R~g~~ 357 (1108)
.+++| ..|.+++||++ | |++||+|++|||+.+.+ +.++..++... +|+.+.|+|.|+++.
T Consensus 45 ~~~~V-~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 109 (122)
T 1v5q_A 45 SPPLI-SYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAE 109 (122)
T ss_dssp SCCEE-EEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred CCcEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence 44565 79999999999 9 99999999999999988 99999988654 489999999998763
No 337
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.20 E-value=1.4e-06 Score=83.16 Aligned_cols=56 Identities=21% Similarity=0.424 Sum_probs=50.2
Q ss_pred eEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 299 LLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 299 ~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
++| ..|.+++||++ | |++||+|++|||+.+ .++.++..++. ..|+.+.|+|.|+++
T Consensus 44 ~~V-~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 103 (117)
T 1v62_A 44 ITI-DRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVPQ 103 (117)
T ss_dssp EEE-EECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBTT
T ss_pred EEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECCC
Confidence 555 79999999999 9 999999999999999 66888888887 478999999999876
No 338
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=1.6e-06 Score=80.71 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=49.9
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..+++| ..|.+++||++ | |++||+|++|||+.+.++ .++..++.. .|+.+.|+|.|+|+.
T Consensus 37 ~~~v~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~ 100 (104)
T 2djt_A 37 DTPLAV-RGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRPLSG 100 (104)
T ss_dssp ECCCEE-EEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCCCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCCC
Confidence 456676 79999999999 9 999999999999999885 555555544 688999999998763
No 339
>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Probab=98.19 E-value=1.6e-05 Score=85.27 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=98.7
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC---CeEEEEEecC-----------CeEEeEEEE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG---PVVAEAMFVN-----------REEIPVYPI 111 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~---~~~~~v~~~d-----------~~~~~a~vv 111 (1108)
.|-+|+|... .....++|.+|+++ +|||+|||+... ...+.|.+.. .+.+...-+
T Consensus 9 ~Pw~v~l~~~---------~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i 77 (234)
T 2asu_B 9 SPWTVSLRNR---------QGQHFCGGSLVKEQ--WILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKM 77 (234)
T ss_dssp CTTEEEEECT---------TSCEEEEEEEEETT--EEEEEGGGSSCTTCCCTTCEEEESCSBSSCCTTCTTCEEEEEEEE
T ss_pred CcceEEeecc---------CCCEEEEEEEEeCC--EEEECHHHcCCCCCCcccEEEEEeeeeccCCCCCCceEEEEEEEE
Confidence 4667777542 13467999999965 999999999642 2334454431 245666666
Q ss_pred EEcCC-CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CCCCCCC
Q 001280 112 YRDPV-HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--APHYKKD 181 (1108)
Q Consensus 112 ~~d~~-~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~~G~is~~~~~--~~~~~~~ 181 (1108)
..+|. +|||||+++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+... ...|+.
T Consensus 78 ~~hp~~~DiALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~- 155 (234)
T 2asu_B 78 VCGPSGSQLVLLKLERSVTLN-QRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRG- 155 (234)
T ss_dssp EECSTTCCEEEEEESSCCCCS-SSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSSCTTBCEEEEEEEECHHHHHHHTTT-
T ss_pred ecCCCCCCeEEEEeCCcCcCC-CcEeccCCCCccccCCCCCEEEEEeCCccCCCCCCccceEEEeeEEcHHHcccccCC-
Confidence 66765 899999997532 21 123444443 23456899999999864322 12222223222210 000110
Q ss_pred CcccccceEEEE-----eeecCCCCCCCceeccc-C--cEEEEeecccCC---CCcccccChHHHHHHHH
Q 001280 182 GYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQ-G--RAVALNAGSKSS---SASAFFLPLERVVRALR 240 (1108)
Q Consensus 182 ~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~-G--~vVGi~~~~~~~---~~~~falPi~~i~~~l~ 240 (1108)
...+ ..+-+ ....-.|.|||||+-.. | .++||.+.+..- ...+.+..+...+..++
T Consensus 156 ~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~ 222 (234)
T 2asu_B 156 RVRE---SEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIH 222 (234)
T ss_dssp CCCT---TEEEECCCSSCCBCCTTCTTCEEEEEETTEEEEEEEECCCSSSSCTTCCEEEEEGGGSHHHHH
T ss_pred ccCc---ceEeecCCCCCCeeccCCCCCceEEEECCeEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHH
Confidence 1111 11222 12345699999998543 3 799999876421 12233444444444443
No 340
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.19 E-value=3.5e-06 Score=78.90 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=50.9
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
+++|..|.++|||+++||++||.|++|||+++. +++++...++. .++.+.|+ +.|.+
T Consensus 44 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~ 102 (107)
T 3qe1_A 44 LQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRA--GEKELILT-VLSVE 102 (107)
T ss_dssp CEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH--CSSEEEEE-EECSS
T ss_pred ceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEcCC
Confidence 567999999999999999999999999999999 88999999996 37889998 55544
No 341
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.19 E-value=2.1e-06 Score=80.17 Aligned_cols=59 Identities=32% Similarity=0.533 Sum_probs=50.4
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++... ++.+.|+|.|++.
T Consensus 37 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~ 99 (105)
T 1wha_A 37 DAGIFV-SRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLEREAG 99 (105)
T ss_dssp CCSCEE-EECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEECCC
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCC
Confidence 467777 69999999999 9 99999999999999988 66776666544 8899999999753
No 342
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.19 E-value=2.9e-06 Score=81.70 Aligned_cols=60 Identities=30% Similarity=0.490 Sum_probs=52.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcC-CCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDG-VDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++... .|+.|.|+|.|++.
T Consensus 43 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 107 (123)
T 1ueq_A 43 DEFLQV-KSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP 107 (123)
T ss_dssp SCCCEE-EEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 466777 69999999999 9 9999999999999998 567888888664 58999999999864
No 343
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.19 E-value=4e-06 Score=79.38 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=50.8
Q ss_pred CCceEEEEEecCCCcccc-CC-CCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RL-EPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL-~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.+++||++ || ++||+|++|||+.|. ++.++..++... ++++.|+|.|+++.
T Consensus 47 ~~gv~V-~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~~ 110 (113)
T 1va8_A 47 MDSVII-SRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM-HGTLTFVLIPSSGP 110 (113)
T ss_dssp SSSEEE-EEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CEEEEEEEECCCCC
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCcc
Confidence 357776 79999999999 99 999999999999999 677888887554 35899999998864
No 344
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.18 E-value=3.3e-06 Score=79.30 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=50.5
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHL 1065 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~r 1065 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++..+ +..++|+ +.|
T Consensus 44 ~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l~-v~R 103 (108)
T 2d92_A 44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP-PGLVHLG-ICS 103 (108)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC-SEEEEEE-EEC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CCeEEEE-EEc
Confidence 489999999999999999 99999999999999965 899999999865 5678887 554
No 345
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.18 E-value=2.7e-06 Score=77.92 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=51.3
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..+.++|||+++| |++||.|++|||+++.++ +++...++. .++.++|. +.|+|+
T Consensus 33 ~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~r~g~ 94 (97)
T 2iwn_A 33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH--TGQTVLLT-LMRRGE 94 (97)
T ss_dssp CCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT--CCSEEEEE-EEEEEE
T ss_pred CCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCC
Confidence 478999999999999999 999999999999999965 677777776 48889998 677664
No 346
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=98.18 E-value=1e-06 Score=85.34 Aligned_cols=60 Identities=12% Similarity=0.262 Sum_probs=53.4
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcC-----CCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEI-----EHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~-----~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++++.++.. +.++.|+|. +.|++.
T Consensus 56 gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~-v~R~~~ 123 (127)
T 1wg6_A 56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLV-ILRRSG 123 (127)
T ss_dssp EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEE-EEECSC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEE-EEeCCC
Confidence 79999999999999999 99999999999999988 67999999975 347889998 677764
No 347
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.18 E-value=2.8e-06 Score=82.33 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=52.7
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC---CHHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP---DLEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~---~l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.|++|..|.++|||+++| |++||.|++|||+++. +++++.++++. .++.++|. +.|+.
T Consensus 54 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~--~~~~v~l~-v~r~~ 115 (128)
T 2db5_A 54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ--TTGSLRLI-VAREP 115 (128)
T ss_dssp EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH--CCSEEEEE-EEECC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc--CCCeEEEE-EEcCC
Confidence 389999999999999999 9999999999999999 89999999997 37889998 66664
No 348
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.18 E-value=1.6e-06 Score=80.77 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=48.2
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVR 1061 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~ 1061 (1108)
.+++|..|.++|||+++||++||.|++|||+++. +++++.+.++..+ + .++|.
T Consensus 48 ~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~-~v~l~ 102 (104)
T 2z17_A 48 MFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG-N-LLTIE 102 (104)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHTT-T-EEEEE
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-C-cEEEE
Confidence 3899999999999999999999999999999999 8899999999863 4 67765
No 349
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.18 E-value=3e-06 Score=77.54 Aligned_cols=59 Identities=32% Similarity=0.565 Sum_probs=48.2
Q ss_pred CCCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHH--HHHhcCCCCeEEEEEEECC
Q 001280 295 GETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLE--TLLDDGVDKNIELLIERGG 355 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~--~~l~~~~g~~v~l~V~R~g 355 (1108)
...|++| ..|.++|||++||++||+|++|||+.+.++.+.+ .++. ..++.+.|+|.|+.
T Consensus 33 ~~~gv~V-~~V~~~spA~~gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 33 DDDGIFV-TRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVREV 93 (95)
T ss_dssp TCCCEEE-EEECTTSTTTTTCCTTCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEEEC
T ss_pred CCCCEEE-EEECCCCchhhCCCCCCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEeCC
Confidence 3468777 6999999999999999999999999998855444 3333 56889999999864
No 350
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=2e-06 Score=79.59 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=50.9
Q ss_pred eEEEEEecCCChhhhc-CCCCCCEEEEECCeecCCH-HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPDL-EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~-GL~~gD~I~~VNg~~v~~l-~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|.+|.++|||+++ ||++||.|++|||+++.++ +++...++. .++.++|+ +.|++.
T Consensus 36 ~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~~~~v~l~-v~R~~~ 95 (100)
T 2edp_A 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKG--SFRILKLI-VRRRNS 95 (100)
T ss_dssp EEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSCSHHHHHHHHT--CCSSCEEE-EEECCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccchHHHHHHHHHh--CCCeEEEE-EEeCCC
Confidence 6899999999999999 9999999999999999995 778888876 26788888 778775
No 351
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.17 E-value=4.1e-06 Score=75.53 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=47.4
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVR 1061 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~ 1061 (1108)
+++|.+|.++|||+++| |++||.|++|||+++ .+++++.+.++.. +..++|+
T Consensus 22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~--~~~v~L~ 76 (88)
T 3e17_A 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS--RGKLQLV 76 (88)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHT--TTEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE
Confidence 78999999999999999 999999999999999 8899999999984 3467776
No 352
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.16 E-value=3.2e-06 Score=77.60 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=52.4
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
|++|..+.+ +|+++||++||.|++|||+++.++ +++.+.++..+.++.++|+ +.|++.+
T Consensus 33 Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g~~ 93 (96)
T 1ujv_A 33 GQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLI-IHRGSGP 93 (96)
T ss_dssp EEEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEE-EECCSSC
T ss_pred CEEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE-EEECCCC
Confidence 789999998 378999999999999999999875 9999999997668999999 7888753
No 353
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.16 E-value=3.3e-06 Score=78.55 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=48.0
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.++.+.+... ....++.+.|+|.|+++
T Consensus 35 ~gv~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~ 96 (104)
T 3i4w_A 35 EGIFI-SFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 96 (104)
T ss_dssp CCEEE-EEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHH
T ss_pred CCEEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECcc
Confidence 47777 79999999999 9 9999999999999997765544332 33468899999999754
No 354
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=98.16 E-value=3.1e-06 Score=80.07 Aligned_cols=60 Identities=25% Similarity=0.469 Sum_probs=49.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.++ .++..++.. .|+.+.|+|.|+++.
T Consensus 48 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 111 (112)
T 2r4h_A 48 NMDLYV-LRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN-GGRRVRLFLKRGETS 111 (112)
T ss_dssp TCCEEE-EEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEECCEEE
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 357776 79999999999 9 999999999999999875 444444443 688999999998764
No 355
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.16 E-value=1.8e-06 Score=82.34 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=49.8
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .++.|.|+|.|+++.
T Consensus 49 ~g~~V-~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 111 (117)
T 1ujd_A 49 IGAYI-AKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLDLNM 111 (117)
T ss_dssp EEEEE-EEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESSCCC
T ss_pred cCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEECCcc
Confidence 47776 79999999999 9 99999999999999977 5666666654 678999999998763
No 356
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.16 E-value=1.7e-06 Score=84.05 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=54.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISM 358 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~ 358 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .|+.+.|+|.|+++..
T Consensus 45 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 109 (129)
T 2dmz_A 45 ASGIYV-KSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLVRRKTSS 109 (129)
T ss_dssp CCEEEE-EEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEEEESSSS
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCccc
Confidence 467776 79999999999 9 99999999999999999 8888888876 8899999999988743
No 357
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.16 E-value=3.2e-06 Score=78.98 Aligned_cols=60 Identities=28% Similarity=0.473 Sum_probs=49.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++. ..|+.+.|+|.|+++.
T Consensus 37 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~~ 100 (106)
T 3axa_A 37 KLGIYV-KSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT-RTSSVVTLEVAKQGAI 100 (106)
T ss_dssp SEEEEE-EEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCSS
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCcc
Confidence 467776 79999999999 9 99999999999999986 444444443 3689999999998763
No 358
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=7.3e-07 Score=86.31 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=53.6
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++||++||.|++|||+++. +++++.++++. .++.++|. +.|+++
T Consensus 61 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 121 (126)
T 2yuy_A 61 DTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQN--SDTTLELS-VMPKDS 121 (126)
T ss_dssp CCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHT--CTTEEEEE-CCCCCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEECCC
Confidence 4789999999999999999999999999999998 99999999997 38899998 677664
No 359
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.16 E-value=2.4e-06 Score=80.22 Aligned_cols=60 Identities=27% Similarity=0.483 Sum_probs=50.9
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++.. .|+.+.|+|.|+++.
T Consensus 41 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~ 104 (108)
T 1q7x_A 41 HGGIYV-KAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQSP 104 (108)
T ss_dssp SCCCBE-EEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-TTSEEEEEEECCCCS
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 467777 69999999999 9 9999999999999998 56666666654 489999999998764
No 360
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.15 E-value=3e-06 Score=77.62 Aligned_cols=59 Identities=20% Similarity=0.407 Sum_probs=49.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+++.++. ++..++.. .|+.+.|+|.|+|+
T Consensus 32 ~~~~~V-~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~g~ 94 (97)
T 2iwn_A 32 PSGIFV-KSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMRRGE 94 (97)
T ss_dssp CCCCEE-EEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CCCEEE-EEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 467777 79999999999 9 9999999999999999764 44444444 78999999999775
No 361
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=98.15 E-value=4.4e-06 Score=79.77 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=49.4
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEE
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRT 1062 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~ 1062 (1108)
.+++|.+|.++|||+++| |++||.|++|||+++. +++++.+.++.. ++.++|++
T Consensus 53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~--~~~v~L~v 109 (118)
T 3b76_A 53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT--SSSIVLKA 109 (118)
T ss_dssp CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC--CSEEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEEE
Confidence 479999999999999999 9999999999999999 899999999973 66788883
No 362
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.15 E-value=1.1e-06 Score=84.97 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=48.7
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEe
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHL 1065 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~r 1065 (1108)
+++|..+.+||||+++| |++||.|++|||+++. +++++.+.++..+ + .++|. +.|
T Consensus 46 ~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~-~-~v~l~-v~r 103 (125)
T 3hpk_A 46 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-G-EVTIH-YNK 103 (125)
T ss_dssp SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC-S-EEEEE-EEE
T ss_pred CEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-C-eEEEE-EEE
Confidence 78999999999999999 9999999999999998 6899999999843 4 48888 444
No 363
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.14 E-value=3.5e-06 Score=78.90 Aligned_cols=58 Identities=24% Similarity=0.214 Sum_probs=49.4
Q ss_pred eEEEEEecCCChhhhcC--CCCCCEEEEECCeecCCH--HHHHHHHHcCCC--CceEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYG--LYALQWIVEINGKRTPDL--EAFVNVTKEIEH--GEFVRVRTVHLN 1066 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G--L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~--~~~v~l~~v~rd 1066 (1108)
+++|..|.++|||+++| |++||.|++|||+++.++ +++...++...+ ++.+.|+ +.|+
T Consensus 44 ~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~-v~r~ 107 (107)
T 3nfk_A 44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL-VRPN 107 (107)
T ss_dssp EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEE-EECC
T ss_pred CeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEE-EEcC
Confidence 78999999999999999 999999999999999965 788888887543 3578888 5553
No 364
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*
Probab=98.14 E-value=8e-05 Score=80.98 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=65.6
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEecC---------CeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~d---------~~~~~a~vv~~d 114 (1108)
.|-+|+|... ....|+|.+|+++ +|||+|||+... .....+.+.. ...+..+-+..|
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAhC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~h 79 (261)
T 3gyl_B 12 WPWQVSITYE----------GVHVCGGSLVSEQ--WVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPH 79 (261)
T ss_dssp STTEEEEEET----------TEEEEEEEECSSS--EEEECGGGSCTTSCGGGEEEEESCSBTTSCCSSCEEECEEEEEEC
T ss_pred CCcEEEEeeC----------CceEEEEEEEcCC--EEEECHHHCCCCCCcccEEEEeCceeccCCCCCceEEEEEEEEEC
Confidence 3567777652 2467999999965 999999999532 2345555532 235666777777
Q ss_pred CC-------CceEEEEECCCC-cccccccCCCC--CCcccCCCCEEEEEecCC
Q 001280 115 PV-------HDFGFFRYDPSA-IQFLNYDEIPL--APEAACVGLEIRVVGNDS 157 (1108)
Q Consensus 115 ~~-------~DlAlLk~d~~~-~~~~~~~~l~l--~~~~~~~G~~V~~iG~p~ 157 (1108)
|. +||||||++..- +. ..+.++.| ....+..|+.+.+.|+..
T Consensus 80 p~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~ 131 (261)
T 3gyl_B 80 PSYLQEGSQGDIALLQLSRPITFS-RYIRPISLPAAQASFPNGLHCTVTGWGH 131 (261)
T ss_dssp TTCCSTTCSCCCEEEEESSCCCCB-TTBCCCBCCCTTCCCCTTCEEEEEESSC
T ss_pred CCcCCCCCCCcEEEEEECCCccCC-CceeccCCCCcccCCCCCCEEEEEecCC
Confidence 75 499999997532 11 12334433 344566899999999864
No 365
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.14 E-value=3.1e-06 Score=79.80 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=52.0
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++. . ++.++|. +.|++..
T Consensus 39 g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~-g~~v~l~-v~R~~~~ 100 (111)
T 2dlu_A 39 GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-C-GNSVRML-VARDPAG 100 (111)
T ss_dssp SBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-H-CSEEEEE-EEESCTT
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-C-CCeEEEE-EEeCCCC
Confidence 78999999999999999 99999999999999994 6899999987 3 7789998 6776653
No 366
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.14 E-value=2.9e-06 Score=76.72 Aligned_cols=59 Identities=20% Similarity=0.393 Sum_probs=48.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcC-CCCeEEEEEEECC
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDG-VDKNIELLIERGG 355 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~-~g~~v~l~V~R~g 355 (1108)
..+++| ..|.++|||++ | |++||+|++|||+++ .++.++..++... .+..+.|+|.|.+
T Consensus 26 ~~~~~V-~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 26 GEPIYI-GHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89 (90)
T ss_dssp TSCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence 356666 79999999999 9 999999999999999 5577777777543 3458999999864
No 367
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.14 E-value=2.2e-06 Score=80.88 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=49.4
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIER 353 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R 353 (1108)
.+++| ..|.+++||++ ||++||+|++|||++|. +|.++..++....++.+.|+|.|
T Consensus 36 ~~v~V-~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 36 TPVQV-HFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp SSCEE-CCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence 45555 79999999999 99999999999999999 89999988877667778898877
No 368
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*
Probab=98.14 E-value=8e-05 Score=80.12 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=101.8
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEec---------CCeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~---------d~~~~~a~vv~~d 114 (1108)
.|-+|.|.... ......++|.+|+++ +|||+|||+... .....+.+. +...+.++-+..|
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~H 82 (241)
T 2any_A 12 WPWQVSLQVKL-------TAQRHLCGGSLIGHQ--WVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIIIH 82 (241)
T ss_dssp STTEEEEEEES-------SSEEEEEEEEEEETT--EEEECGGGGSSCCCSTTEEEECSCSBGGGCCTTSCCBCEEEEEEC
T ss_pred CCcEEEEEEEc-------CCCceEEEEEEecCC--EEEECHHHcCCCCCCccEEEEeeeeeccccccCceEEeeEEEEEC
Confidence 36678887531 123457999999965 999999999743 123445432 1234556666677
Q ss_pred CC-------CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCC
Q 001280 115 PV-------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APH 177 (1108)
Q Consensus 115 ~~-------~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~ 177 (1108)
|. +|||||+++..- +. ..+.++.|. ......|+.+++.|+..... .......+..+... ...
T Consensus 83 p~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (241)
T 2any_A 83 QNYKVSEGNHDIALIKLQAPLEYT-EFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR 161 (241)
T ss_dssp TTCCTTSSSSCCEEEEESSCCCCB-TTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHTT
T ss_pred CCCCCCCCCCCeEEEEeCCcccCC-CCcceeEcCCcccCCCCCCeEEEEecccCCCCCCcCchhheeEeEEeCHHHhhhH
Confidence 64 699999997532 21 123344443 33467899999999864321 11222222222210 011
Q ss_pred CCCCCcccccceEEEE-----eeecCCCCCCCceecc-cC--cEEEEeecccCC---CCcccccChHHHHHHHHHH
Q 001280 178 YKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRALRFL 242 (1108)
Q Consensus 178 ~~~~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falPi~~i~~~l~~l 242 (1108)
|......+ .++=+ ....-.|.|||||+-. +| .++||.+.+..- ...+.+.-+...+..+++.
T Consensus 162 ~~~~~~~~---~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~ 234 (241)
T 2any_A 162 YQDYKITQ---RMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234 (241)
T ss_dssp SCTTCSCT---TEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred hccCCCCc---CcEeecCCCCCCccCCCCCCCcEEEEECCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHH
Confidence 21111111 12222 1234579999999854 45 699999876421 2234445555555555443
No 369
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.14 E-value=3.9e-06 Score=78.91 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=48.6
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEEC
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
.|++| ..|.++|||++ ||++||+|++|||+.+.++ .++..++... ++.+.|+|.|.
T Consensus 45 ~gv~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 103 (109)
T 1q3o_A 45 ALQYL-ESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVMV 103 (109)
T ss_dssp SSEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEEE
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEEC
Confidence 47777 79999999999 9999999999999999999 7777766554 78899998874
No 370
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...
Probab=98.13 E-value=7e-05 Score=80.48 Aligned_cols=163 Identities=16% Similarity=0.179 Sum_probs=92.3
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEec---------CCeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~---------d~~~~~a~vv~~d 114 (1108)
.|-+|.|.... ......++|.+|+++ +|||+|||+... +..+.+.+. +...+..+-+..|
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~H 82 (238)
T 3bg8_A 12 WPWQVTLHTTS-------PTQRHLCGGSIIGNQ--WILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIH 82 (238)
T ss_dssp STTEEEEEECS-------SSCEEEEEEEEEETT--EEEECGGGGTTCCCGGGEEEECSCSBGGGCCTTSCCEEEEEEEEC
T ss_pred cCcEEEEEeec-------CCCcEEEEEEEeeCC--EEEECHHHCCCCCCCceEEEEEeeccCCcCCCCceEEeeEEEEEC
Confidence 36678876531 123467999999965 999999999743 234555542 2345666767777
Q ss_pred CC-------CceEEEEECCCC-cccccccCCCCCC--cccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCC
Q 001280 115 PV-------HDFGFFRYDPSA-IQFLNYDEIPLAP--EAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APH 177 (1108)
Q Consensus 115 ~~-------~DlAlLk~d~~~-~~~~~~~~l~l~~--~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~ 177 (1108)
|. +||||||++..- +. ..+.++.|.. .....|+.+.+.|+..... .......+.-+... ...
T Consensus 83 p~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (238)
T 3bg8_A 83 DQYKMAESGYDIALLKLETTVNYT-DSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR 161 (238)
T ss_dssp TTCCCGGGSCCCEEEEESSCCCCB-TTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSCCCCSBCEEEECCEECHHHHHHH
T ss_pred CCCCCCCCCCcEEEEEECCccccC-CCcccCCCCCCccCcCCCCeEEEEecCCCCCCCChhhhhcEeeEEEECHHHhhhh
Confidence 65 699999997532 21 1234444443 3367889999999864321 11112111111110 000
Q ss_pred CCCCCcccccceEEEE-----eeecCCCCCCCceecc-cC--cEEEEeeccc
Q 001280 178 YKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSK 221 (1108)
Q Consensus 178 ~~~~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~ 221 (1108)
|......+ .+|=+ ....-.|.|||||+-. +| .++||.+.+.
T Consensus 162 ~~~~~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~ 210 (238)
T 3bg8_A 162 YRGHKITH---KMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGE 210 (238)
T ss_dssp CTTSCCCT---TEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECS
T ss_pred hcCCCCCC---CeEeecCCCCCCCcCCCCCCcceEEEECCeEEEEEEEEECC
Confidence 11111111 11222 1234579999999853 44 5999998764
No 371
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Probab=98.13 E-value=3e-05 Score=82.42 Aligned_cols=164 Identities=14% Similarity=0.138 Sum_probs=90.6
Q ss_pred EEEEEEEeCCCcEEEEcccccCCC--CeEEEEEec-------CCeEEeEEEEEEcCC-------CceEEEEECCCCcccc
Q 001280 69 YATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV-------NREEIPVYPIYRDPV-------HDFGFFRYDPSAIQFL 132 (1108)
Q Consensus 69 ~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~-------d~~~~~a~vv~~d~~-------~DlAlLk~d~~~~~~~ 132 (1108)
.++|.+|+++ +|||+|||+... ...+.+.+. +...+...-+..||. +||||||++..-
T Consensus 21 ~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v---- 94 (224)
T 3beu_A 21 GCGGALYAQD--IVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPI---- 94 (224)
T ss_dssp TEEEEEEETT--EEEECGGGSCSSEEBCCCEEEESCSBTTCTTCEEEEEEEEEECTTCCCGGGSCCCEEEEESSCC----
T ss_pred ceeEEEeeCC--EEEEChhhcCCCCCcceEEEEeeEeecCCCCceEEEEEEEEeCCCcCCCcCCCCEEEEEeCCCC----
Confidence 3899999965 999999999853 223455543 234566666777775 499999997532
Q ss_pred cccCCCCCCcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCCCCcccccceEEEE-----eeecCCC
Q 001280 133 NYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQA-----ASGTKGG 200 (1108)
Q Consensus 133 ~~~~l~l~~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~~~~~~~~~~~~~~i~~-----~a~~~~G 200 (1108)
.+.++++.......+..+.+.|+..... .......+..+... ...|......+ .+|=+ ....-.|
T Consensus 95 ~~~~i~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~---~~~Ca~~~~~~~~~C~G 171 (224)
T 3beu_A 95 NQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVAN---EMICAGYDTKQEDTCQG 171 (224)
T ss_dssp CSCCCEECCSSTTSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHCSSCCCGG---GEEEECCSSSSCBCCTT
T ss_pred CCCccccccccccCCCEEEEEecCccCCCCcccceeeEeeCcccCHHHhhhhcCCccCCC---CeEEeccCCCCCcCCCC
Confidence 2233444444444567899999864321 12222223222210 00011000111 11221 1234579
Q ss_pred CCCCceeccc--C--cEEEEeecccCC---CCcccccChHHHHHHHHH
Q 001280 201 SSGSPVIDWQ--G--RAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 201 ~SGgPv~n~~--G--~vVGi~~~~~~~---~~~~falPi~~i~~~l~~ 241 (1108)
.|||||+-.+ | .++||.+.+..- ...+.+..+...+..+++
T Consensus 172 DsGgPl~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~ 219 (224)
T 3beu_A 172 DSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 219 (224)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHH
T ss_pred cCCCeeEEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 9999998543 3 689999876421 223444555555555543
No 372
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.13 E-value=4.3e-06 Score=87.06 Aligned_cols=57 Identities=25% Similarity=0.399 Sum_probs=53.6
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.+||||+++||++||.|++|||+++.+ ++++.+.++. ++.+.|+ +.|+|+
T Consensus 111 ~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~---~~~v~l~-v~r~g~ 169 (192)
T 3k1r_A 111 GLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT---EKTVSIK-VRHIGL 169 (192)
T ss_dssp EEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS---SSEEEEE-EEECCE
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC---CCeEEEE-EEECCc
Confidence 7899999999999999999999999999999999 9999999886 7889999 788887
No 373
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.12 E-value=3.1e-06 Score=79.66 Aligned_cols=64 Identities=25% Similarity=0.532 Sum_probs=51.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEEEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGISMTVN 361 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~~ 361 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+. .++..++.. .++.+.|+|.|+++..++.
T Consensus 35 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~~~~~ 102 (110)
T 1um1_A 35 APGLYI-QTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH-GGKKMRFLVAKSDVETAKK 102 (110)
T ss_dssp CSSEEE-EEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT-CCSEEEEEEECCCHHHHHH
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcceeEE
Confidence 467777 69999999999 9 999999999999999864 444444433 5889999999998755443
No 374
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.12 E-value=4e-06 Score=76.93 Aligned_cols=58 Identities=19% Similarity=0.412 Sum_probs=46.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHH-HHhcCCCCeEEEEEEEC
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLET-LLDDGVDKNIELLIERG 354 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~-~l~~~~g~~v~l~V~R~ 354 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+..+... .+....++++.|+|.|.
T Consensus 30 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~ 90 (96)
T 2qkv_A 30 EIGCTI-ADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRP 90 (96)
T ss_dssp SSSEEE-EEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred CCcEEE-EEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeC
Confidence 367776 79999999999 9 99999999999999987544432 23445667899999985
No 375
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.12 E-value=5.4e-06 Score=75.79 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=48.6
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
.+++|.+|.++|||++ ||++||.|++|||+++.+ +.++...++. .++.++|. +.|+
T Consensus 35 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~ 92 (95)
T 1mfg_A 35 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT--FQNTVELI-IVRE 92 (95)
T ss_dssp CCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHH--CCSEEEEE-EEEE
T ss_pred CCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhc--CCCeEEEE-EEeC
Confidence 4899999999999999 999999999999999988 5677777774 47889998 5654
No 376
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.12 E-value=4.1e-06 Score=76.19 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=49.0
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. +..++|. +.|++
T Consensus 31 ~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~r~~ 90 (93)
T 2dkr_A 31 PIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA--QGSVKLV-VRSGP 90 (93)
T ss_dssp CCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC--CSEEEEE-ECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCcEEEE-EEeCC
Confidence 78999999999999996 99999999999999995 68899888874 4568887 56654
No 377
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.12 E-value=1.8e-06 Score=80.13 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=51.1
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++. .++.++|. +.|++.
T Consensus 37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~ 97 (103)
T 1wfv_A 37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS--GGRRVRLL-LKRGTG 97 (103)
T ss_dssp EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH--HCSEECEE-EECTTC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECCC
Confidence 89999999999999999 99999999999999988 5788888873 47889998 677765
No 378
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=4.5e-06 Score=79.92 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=51.6
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.++ +++...++.. ++.++|. +.|++.
T Consensus 47 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~--g~~v~l~-v~R~~~ 108 (120)
T 2eno_A 47 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA--GYAVSLR-VQHRLQ 108 (120)
T ss_dssp CSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH--CSEEEEE-EEEEEE
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEeCCc
Confidence 489999999999999999 999999999999999995 5888888863 7789998 677654
No 379
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.12 E-value=2.8e-06 Score=77.91 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=45.6
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
|++|.+|.++|||+++| |++||.|++|||+++.++ ++....++. + +..++|. +.|.
T Consensus 32 gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~-~-~~~v~l~-v~R~ 90 (96)
T 2qkv_A 32 GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG-A-NGKVSME-VTRP 90 (96)
T ss_dssp SEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-C-SSEEEEE-EECC
T ss_pred cEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-C-CCcEEEE-EEeC
Confidence 79999999999999999 999999999999999863 444555554 3 5668888 5553
No 380
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.12 E-value=5.1e-06 Score=77.81 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=51.1
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++. .++.++|. +.|++.
T Consensus 40 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~~ 101 (107)
T 1wf8_A 40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN--TKGNVRFV-IGREKP 101 (107)
T ss_dssp EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH--CCSEEEEE-EEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCCeEEEE-EEeCCC
Confidence 489999999999999999 99999999999999985 6778888886 37889998 566543
No 381
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.12 E-value=5e-06 Score=76.15 Aligned_cols=55 Identities=24% Similarity=0.477 Sum_probs=47.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEe--CChhHHHHHHhc--CCCCeEEEEEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVI--TQFLKLETLLDD--GVDKNIELLIE 352 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v--~~~~~l~~~l~~--~~g~~v~l~V~ 352 (1108)
.+.+| ..|.++|||++ ||++||+|++|||++| .+|.++...+.. ..|+.|.|.|.
T Consensus 39 ~~~~I-~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 39 KAVVV-KSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp TEEEE-EEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 34444 79999999999 9999999999999998 499999998854 56888888875
No 382
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.12 E-value=2.4e-06 Score=77.06 Aligned_cols=56 Identities=21% Similarity=0.474 Sum_probs=46.6
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEEC
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
.|++| ..|.++|||++ | |+.||+|++|||+.+ .++.++..++... +.++.|++.+.
T Consensus 21 ~gv~V-~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~-~~~v~L~v~~~ 80 (88)
T 3e17_A 21 SQIFV-KEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRD 80 (88)
T ss_dssp EEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEECCC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEeCC
Confidence 36666 79999999999 9 999999999999999 7788888888664 35788887653
No 383
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.12 E-value=3.4e-06 Score=82.17 Aligned_cols=60 Identities=23% Similarity=0.438 Sum_probs=51.5
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhc-CCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDD-GVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~-~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. ..++.|.|+|.|++.
T Consensus 64 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 128 (131)
T 1wfg_A 64 RLCAFI-TKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128 (131)
T ss_dssp CEEEEE-EEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence 357777 79999999999 9 99999999999999975 5788888865 478999999999764
No 384
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.12 E-value=6.8e-06 Score=77.98 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=46.6
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIER 353 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~V~R 353 (1108)
.+++| ..|.++|||++ | |++||+|++|||+.+ .++.++..++.... +.+.|+|.+
T Consensus 50 ~~~~V-~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~ 108 (114)
T 2gzv_A 50 PCLYI-VQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNK 108 (114)
T ss_dssp CCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEC
T ss_pred CCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEe
Confidence 45666 79999999999 9 999999999999999 88999988886543 468888765
No 385
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.12 E-value=2.9e-06 Score=78.98 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=48.6
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
+++|..|.++|||+++| |++||.|++|||+++. ++.++...++. .++.+.|. +.|++
T Consensus 36 gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~r~~ 95 (104)
T 3i4w_A 36 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN--AGQTVTII-AQYKP 95 (104)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT--SCSEEEEE-EEECH
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECc
Confidence 89999999999999999 9999999999999995 45677777775 47788888 66654
No 386
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.11 E-value=2.3e-06 Score=82.49 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=50.7
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhc-CCCCeEEEEEEEC
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDD-GVDKNIELLIERG 354 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~-~~g~~v~l~V~R~ 354 (1108)
.+++| ..|.++|||++ | |++||+|++|||+.|. ++.++..++.. .+|+.|+|+|.|+
T Consensus 49 ~~v~V-~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 49 PYLQI-SHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp TEEEE-CCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred CcEEE-EEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 34454 79999999999 9 9999999999999995 89999999975 6799999999997
No 387
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.11 E-value=3.5e-06 Score=78.84 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=47.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHH-HHhcCCCCeEEEEEEECC
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLET-LLDDGVDKNIELLIERGG 355 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~-~l~~~~g~~v~l~V~R~g 355 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+..+... .+....++++.|+|.|..
T Consensus 24 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 85 (106)
T 2la8_A 24 EIGCTI-ADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPK 85 (106)
T ss_dssp SSSEEE-EECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEECC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCC
Confidence 367777 79999999999 9 99999999999999987544443 233455678999999853
No 388
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.11 E-value=4.8e-06 Score=75.83 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=49.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..+++| ..|.++|||++ | |++||+|++|||+.+ .++.++..++....+ .+.|+|.|...
T Consensus 27 ~~~~~V-~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~~ 89 (93)
T 3o46_A 27 TGAIIV-ARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGSK 89 (93)
T ss_dssp TCCEEE-EEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC--
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCCC
Confidence 356666 79999999999 9 999999999999999 788888888866544 89999988654
No 389
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.11 E-value=4.6e-06 Score=78.64 Aligned_cols=59 Identities=24% Similarity=0.546 Sum_probs=49.7
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
.|++| ..|.+++||++ | |++||+|++|||+.+.+ +.++..++.. .|+.+.|+|.|++..
T Consensus 38 ~g~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 100 (111)
T 2dlu_A 38 SGVVV-RTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDPAG 100 (111)
T ss_dssp SSBEE-EEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESCTT
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCCC
Confidence 67777 79999999999 9 99999999999999985 4666666654 478999999997653
No 390
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.10 E-value=4.4e-06 Score=79.86 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=49.7
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.++.+..... ....++.+.|+|.|++.
T Consensus 38 ~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~ 99 (119)
T 1tp5_A 38 EGIFI-SFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 99 (119)
T ss_dssp CCEEE-EEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 57776 79999999999 9 9999999999999999997655443 44578899999999754
No 391
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.10 E-value=3.3e-06 Score=79.89 Aligned_cols=64 Identities=23% Similarity=0.428 Sum_probs=51.5
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEEEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGISMTVN 361 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~~~~~~ 361 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.++. ++..++.. .|+.+.|+|.|+++..+++
T Consensus 34 ~~g~~V-~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~~~~~ 101 (113)
T 2g5m_B 34 KLGIFV-KTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGRERPGEQSE 101 (113)
T ss_dssp CEEEEE-EECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH-SCSSCEEEEEECCCCTTSS
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeCCCCCcch
Confidence 467776 79999999999 9 9999999999999998744 44444444 4889999999998755443
No 392
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.10 E-value=7.6e-06 Score=73.40 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=45.8
Q ss_pred eEEEEEecCCChhhh-cCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEE
Q 001280 1008 GVYVARWCHGSPVHR-YGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVR 1061 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~-~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~ 1061 (1108)
+++|.++.++|||++ +||++||.|++|||+++. +++++...++. + ++.++|+
T Consensus 29 ~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~-~~~v~l~ 83 (87)
T 4e34_A 29 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-Q-RGEIEFE 83 (87)
T ss_dssp EEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH-C-CSEEEEE
T ss_pred CEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C-CCeEEEE
Confidence 789999999999999 699999999999999995 55899999986 3 5667777
No 393
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.10 E-value=6.5e-07 Score=84.99 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=53.3
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCHHH--HHHHHHcCCCCceEEEEEEEeC-CeEEEEEEE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEA--FVNVTKEIEHGEFVRVRTVHLN-GKPRVLTLK 1075 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l~~--f~~~v~~~~~~~~v~l~~v~rd-g~~~~~~lk 1075 (1108)
.+++|..|.++|||+++||++||.|++|||+++.++.+ +...++. ++.+.|+ +.|+ |+.+.++++
T Consensus 41 ~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~---~~~v~l~-v~r~~g~~~~~~~~ 108 (114)
T 1x5n_A 41 PGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS---SRSLTIS-IVAAAGRELFMTDR 108 (114)
T ss_dssp CSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHH---CSSEEEE-ECSSTTTHHHHSSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc---CCeEEEE-EEcCCCCceEEEec
Confidence 38999999999999999999999999999999999954 7777775 3578888 6787 765444433
No 394
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.10 E-value=6.5e-06 Score=85.75 Aligned_cols=69 Identities=28% Similarity=0.514 Sum_probs=56.3
Q ss_pred CCCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEE---CCEEEEEEE-cc
Q 001280 295 GETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIER---GGISMTVNL-VQ 364 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~V~R---~g~~~~~~v-~~ 364 (1108)
...|++| ..|.++|||++||++||+|++|||+.+.+..+.+... ....+..|.|+|.| +|+..++.+ +.
T Consensus 22 ~~~g~~V-~~v~~~spA~~gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~G~~~~~~v~~~ 95 (195)
T 2qbw_A 22 DDDGIFV-TRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVE 95 (195)
T ss_dssp TCCSEEE-EEECTTSTTTTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCCCEEE-EEECCCChHHhCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEcCCCCCCceeEeEee
Confidence 3578887 6999999999999999999999999999876544332 23446799999999 899888887 54
No 395
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Probab=98.10 E-value=0.00013 Score=79.01 Aligned_cols=167 Identities=13% Similarity=0.118 Sum_probs=93.8
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEec---------CCeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~---------d~~~~~a~vv~~d 114 (1108)
.|-+|+|...... .......++|.+|+++ +|||+|||+... ...+.|.+. +...+..+-+..|
T Consensus 12 ~Pw~v~l~~~~~~----~~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~H 85 (252)
T 1rtf_B 12 HPWQAAIFAKHRR----SPGERFLCGGILISSC--WILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVH 85 (252)
T ss_dssp STTEEEEEEEC--------CEEEEEEEEECSSS--EEEECGGGGTTCCCGGGEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred cCCEEEEEEecCC----CCCCCEEEEEEEEeCC--EEEECHHHCCCCCCcccEEEEeCcccccCCCCcceEEEEEEEEeC
Confidence 4667888764211 1123457999999965 999999999743 234566553 2345666667777
Q ss_pred CC-------CceEEEEECCCC---ccc-ccccCCCCC--CcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC-
Q 001280 115 PV-------HDFGFFRYDPSA---IQF-LNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD- 174 (1108)
Q Consensus 115 ~~-------~DlAlLk~d~~~---~~~-~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~- 174 (1108)
|. +|||||+++... +.+ ..+.++.|. ...+..|+.+.+.|+..... .......+..+...
T Consensus 86 p~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~ 165 (252)
T 1rtf_B 86 KEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSR 165 (252)
T ss_dssp TTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEECCGGG
T ss_pred CCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCccccchheEeeeEEecHHH
Confidence 64 699999997541 111 123444443 23456789999999864321 12222223222221
Q ss_pred -CCCCC-CCCcccccceEEEEe-----------eecCCCCCCCceecc-cC--cEEEEeeccc
Q 001280 175 -APHYK-KDGYNDFNTFYMQAA-----------SGTKGGSSGSPVIDW-QG--RAVALNAGSK 221 (1108)
Q Consensus 175 -~~~~~-~~~~~~~~~~~i~~~-----------a~~~~G~SGgPv~n~-~G--~vVGi~~~~~ 221 (1108)
...+. .....+ .+|=+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 166 C~~~~~~~~~~~~---~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~~~~~~l~Gi~S~g~ 225 (252)
T 1rtf_B 166 CTSQHLLNRTVTD---NMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGL 225 (252)
T ss_dssp SSTTTTTTCCCCT---TEEEEECCC------CCCBCCTTCTTCEEEEEETTEEEEEEEEEECS
T ss_pred hhhhhccCCCCCC---CEEEecCCCCCCccCCCCccccCCCcCceEEEeCCcEEEEEEEEEcC
Confidence 00110 001111 122221 234569999999843 45 6999998764
No 396
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.10 E-value=8.2e-06 Score=73.76 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=46.0
Q ss_pred eEEEEEecCCChhhhc-CCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEE
Q 001280 1008 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVR 1061 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~ 1061 (1108)
+++|.+|.++|||+++ ||++||.|++|||+++.+ +.++...++. .++.++|.
T Consensus 31 g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~~v~l~ 85 (90)
T 1qav_A 31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK--TGKEVVLE 85 (90)
T ss_dssp EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHT--CCSEEEEE
T ss_pred CEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEEEE
Confidence 7899999999999999 999999999999999986 5777788876 36678887
No 397
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.09 E-value=3.1e-06 Score=79.63 Aligned_cols=59 Identities=27% Similarity=0.486 Sum_probs=51.6
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCC---CCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGV---DKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~---g~~v~l~V~R~g~ 356 (1108)
.+++| ..|.+++||++ | |++||+|++|||+.+.+ +.++..++.... +..++|+|.|+++
T Consensus 41 ~~~~V-~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 41 PLVYI-HEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp SSEEE-EEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred CCEEE-EEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence 36666 79999999999 9 99999999999999987 778888886655 8899999999875
No 398
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.09 E-value=6.2e-06 Score=78.26 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=47.1
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVR 1061 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~ 1061 (1108)
+++|.+|.++|||+++| |++||.|++|||+++ .+++++.+.++... + .++|.
T Consensus 51 ~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~-~v~l~ 105 (114)
T 2gzv_A 51 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-G-EVTIH 105 (114)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-S-EEEEE
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-C-eEEEE
Confidence 68999999999999999 999999999999999 99999999998743 3 47776
No 399
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=98.09 E-value=6.4e-06 Score=80.32 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=50.1
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
|++|..|.++|||+++||++||+|++|||+++.+ +++++..++. .++.++|+ +.+.+
T Consensus 66 gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~~~~ 124 (132)
T 3l4f_D 66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ--GGNTLMVK-VVMVT 124 (132)
T ss_dssp SEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHHH--TTTEEEEE-EECCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEECC
Confidence 8999999999999999999999999999999994 7899999987 37788888 44443
No 400
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.09 E-value=4.6e-06 Score=75.85 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=44.0
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIE 352 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~ 352 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++.. ..++++|.
T Consensus 34 ~~g~~V-~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~---~~l~ltV~ 89 (94)
T 3kzd_A 34 IRRLYV-NSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVR 89 (94)
T ss_dssp SCEEEE-EEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS---SEEEEEEE
T ss_pred cCCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC---CeEEEEEE
Confidence 357776 79999999999 999999999999999985 6888887764 36777664
No 401
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.09 E-value=4.3e-06 Score=78.25 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=48.7
Q ss_pred eEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 299 LLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 299 ~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
++| ..|.++|||++ ||++||+|++|||+++. ++.++..++.. .|+.+.|+|.|.+.
T Consensus 45 ~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 45 QHV-SAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRA-GEKELILTVLSVES 103 (107)
T ss_dssp EEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH-CSSEEEEEEECSSC
T ss_pred eEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCCC
Confidence 345 79999999999 99999999999999999 77888887764 58899999999754
No 402
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A
Probab=98.09 E-value=0.00011 Score=81.01 Aligned_cols=180 Identities=12% Similarity=0.130 Sum_probs=101.5
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEecC---------CeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~d---------~~~~~a~vv~~d 114 (1108)
.|-+|.|... ...++|.+|+++ +|||+|||+... ...+.|.+.. ...+..+-+..|
T Consensus 47 ~Pw~v~l~~~-----------~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~h 113 (283)
T 1yc0_A 47 HPWLAAIYIG-----------DSFCAGSLVHTC--WVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPY 113 (283)
T ss_dssp STTEEEEEET-----------TEEEEEEEEETT--EEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEEC
T ss_pred CCeEEEEEcC-----------CcEEEEEEeeCC--EEEECHHHcCCCCCCceEEEEEeeeecccCCCceEEEeeEEEEec
Confidence 4667777541 357999999965 999999999754 2446666532 345556656555
Q ss_pred CC--------CceEEEEECCCC---ccc-ccccCCCCCC--cccCCCCEEEEEecCCCCC------CeEEEEEEEEecC-
Q 001280 115 PV--------HDFGFFRYDPSA---IQF-LNYDEIPLAP--EAACVGLEIRVVGNDSGEK------VSILAGTLARLDR- 173 (1108)
Q Consensus 115 ~~--------~DlAlLk~d~~~---~~~-~~~~~l~l~~--~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~- 173 (1108)
|. +|||||+++... +.+ ..+.++.|.. ..+..|+.+.+.|+..... .......+.-+..
T Consensus 114 p~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~L~~~~v~i~~~~ 193 (283)
T 1yc0_A 114 TLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADH 193 (283)
T ss_dssp TTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCSCCSBCEEEEEEBCCHH
T ss_pred CccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCccCCCCCccCchheEeEEEEECHH
Confidence 43 599999997541 111 1234444433 4567899999999864321 1222222322221
Q ss_pred --CC-CCCCCCCcccccceEEEEe-----eecCCCCCCCceecc-cC--cEEEEeecccCC---CCcccccChHHHHHHH
Q 001280 174 --DA-PHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRAL 239 (1108)
Q Consensus 174 --~~-~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falPi~~i~~~l 239 (1108)
.. ..|+. ... ..+|=+. ...-.|.|||||+-. +| .++||.+.+..- ...+.+..+...+..+
T Consensus 194 ~C~~~~~~~~-~~~---~~~iCa~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI 269 (283)
T 1yc0_A 194 KCSSPEVYGA-DIS---PNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWI 269 (283)
T ss_dssp HHTSTTTTGG-GCC---TTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHH
T ss_pred HhcCccccCC-cCC---CCEEeeCCCCCCCccCCCCCCCceEEEECCcEEEEEEEEECCCCCCCCCCeEEEEhhhHHHHH
Confidence 11 01111 011 1122221 234579999999854 45 599999876521 2234445555555555
Q ss_pred HHH
Q 001280 240 RFL 242 (1108)
Q Consensus 240 ~~l 242 (1108)
++.
T Consensus 270 ~~~ 272 (283)
T 1yc0_A 270 NDR 272 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 403
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2
Probab=98.09 E-value=1.4e-05 Score=85.94 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=94.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC----CeEEEEEecC-------C--eEEeEEEEE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG----PVVAEAMFVN-------R--EEIPVYPIY 112 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~----~~~~~v~~~d-------~--~~~~a~vv~ 112 (1108)
.|-+|+|.... . ......++|.+|+++ +|||+|||+... +..+.+.+.. + +.+.++-+.
T Consensus 12 ~Pw~v~l~~~~----~--~~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~ 83 (237)
T 2f91_A 12 FPYQLSFQETF----I--GFSFHFCGASIYNEN--YAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKII 83 (237)
T ss_dssp STTEEEEEEEE----T--TEEEEEEEEEEEETT--EEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEEEEE
T ss_pred CCcEEEEEEec----C--CCCcceEEEEEeeCC--EEEEcHHhCCCCccCCcccEEEEECCeeccCCCCccEEEEEEEEE
Confidence 35678876531 0 001134999999965 999999999742 3446665531 2 556777677
Q ss_pred EcCC-------CceEEEEECCCC-cccccccCCCCCCcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCC
Q 001280 113 RDPV-------HDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APH 177 (1108)
Q Consensus 113 ~d~~-------~DlAlLk~d~~~-~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~~~ 177 (1108)
.||. +||||||++..- +. ..+.++.|.......|+.+.+.|+..... .......+..+... ...
T Consensus 84 ~Hp~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 162 (237)
T 2f91_A 84 LHENFDYNLLDNDISLLKLSGSLTFN-DNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRAD 162 (237)
T ss_dssp ECTTCCTTTCTTCCEEEEESSCCCCB-TTBCCCBCCCTTCCCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHHHH
T ss_pred ECCCCCCCCCCCcEEEEEECCCcccC-CceeeccCCCCCCCCCCcEEEEECCcCCCCCCccceeeEEEEeEcCHHHhhhh
Confidence 7764 699999998532 21 13455556555557899999999864321 11222222222210 000
Q ss_pred CCCCCcccccceEEEE-----eeecCCCCCCCceecccC---cEEEEeeccc
Q 001280 178 YKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQG---RAVALNAGSK 221 (1108)
Q Consensus 178 ~~~~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~~G---~vVGi~~~~~ 221 (1108)
|......+ .+|=+ ....-.|.|||||+-.++ .++||.+.+.
T Consensus 163 ~~~~~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~ 211 (237)
T 2f91_A 163 YGADEILD---SMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGY 211 (237)
T ss_dssp HCTTTSCT---TEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEES
T ss_pred hCCCCcCC---CeEEEecCCCCCCCCCCcCCCCeEEecCCCEEEEEEEEecC
Confidence 11001111 12222 123457999999985432 7999998764
No 404
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=98.09 E-value=6.8e-06 Score=78.45 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=49.4
Q ss_pred CCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEEC
Q 001280 295 GETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
...|++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++.. .++++.|+|.|.
T Consensus 51 ~~~gv~V-~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~v~R~ 112 (118)
T 3b76_A 51 WDLPIYV-ISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKR-TSSSIVLKALEV 112 (118)
T ss_dssp CCCCEEE-EEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHS-CCSEEEEEEEEE
T ss_pred CCCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 3467777 79999999999 9 9999999999999999 77777777764 478899999984
No 405
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.09 E-value=2e-06 Score=79.88 Aligned_cols=58 Identities=26% Similarity=0.443 Sum_probs=48.4
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.++ .++..++. ..|+.+.|+|.|+++
T Consensus 36 ~~~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 36 MDLYV-LRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp EEEEC-CCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH-HHCSEECEEEECTTC
T ss_pred CCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence 46666 79999999999 9 999999999999999985 44444444 567899999999876
No 406
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=3.2e-06 Score=77.58 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=47.2
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECC
Q 001280 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGG 355 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g 355 (1108)
..+++| ..|.++|||+.||++||+|++|||+.+.+. .++..++.. .|+.+.|+|.|++
T Consensus 30 ~~~~~V-~~V~~~spA~agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 30 SLPLTV-VAVTAGGSAHGKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp SSSCBC-CCBCSSSSSTTTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred CCCeEE-EEECCCCchhhCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 457776 799999999559999999999999999874 444444444 6899999999976
No 407
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.08 E-value=1.5e-06 Score=83.22 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=52.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGISMT 359 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~ 359 (1108)
..|++| ..|.+++||++ | |++||+|++|||+.+. ++.++..++....+..+.+++.|+++..+
T Consensus 41 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~~ 107 (119)
T 1x6d_A 41 NKVITV-HRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEA 107 (119)
T ss_dssp CSSCEE-EEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCCSSS
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCCccc
Confidence 357777 69999999999 9 9999999999999998 46677777766666777889999887543
No 408
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.08 E-value=3.9e-06 Score=80.24 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=47.1
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCHHHH--HHHHHcCCCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDLEAF--VNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l~~f--~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
+++|..|.++|||+++| |++||.|++|||+++.++.++ ...++. .++.+.|. +.|++
T Consensus 39 gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~r~~ 98 (119)
T 1tp5_A 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN--AGQTVTII-AQYKP 98 (119)
T ss_dssp CEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT--SCSEEEEE-EEECH
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECC
Confidence 89999999999999999 999999999999999998543 334443 47888888 55554
No 409
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A
Probab=98.08 E-value=0.00017 Score=77.90 Aligned_cols=181 Identities=15% Similarity=0.231 Sum_probs=98.6
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEecC---------CeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~d---------~~~~~a~vv~~d 114 (1108)
.|-+|+|... .....++|.+|+++ +|||+||++... +..+.+.+.. .+.+...-++.+
T Consensus 29 ~Pw~v~l~~~---------~~~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~h 97 (247)
T 1ddj_A 29 WPWQVSLRTR---------FGMHFCGGTLISPE--WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 97 (247)
T ss_dssp STTEEEEECT---------TSCEEEEEEEEETT--EEEECGGGGTTCSCGGGCEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred CCcEEEEEcC---------CCCeEEEEEEeeCC--EEEEcHHHcCCCCCCccEEEEEcccccCccCCceEEEEeeeEEcC
Confidence 4667887642 12467999999965 999999999743 2334555431 245566666677
Q ss_pred CC-CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC----CeEEEEEEEEecC---CCCCCCCCCc
Q 001280 115 PV-HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSILAGTLARLDR---DAPHYKKDGY 183 (1108)
Q Consensus 115 ~~-~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~~G~is~~~~---~~~~~~~~~~ 183 (1108)
|. +||||||++..- +. ..+.++.|. ...+..|+.+++.|+..... .......+..+.. ....+.....
T Consensus 98 p~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~ 176 (247)
T 1ddj_A 98 PTRKDIALLKLSSPAVIT-DKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRV 176 (247)
T ss_dssp TTSCSCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEECCCCSSSTTTTBCEEEEEEEECHHHHTSTTTTTTCC
T ss_pred CCCCcEEEEEeCCceeeC-CCEEeeecCCcccCCCCCCEEEEEEcccCCCCCCCccceEEeeeecCHHHhcchhccCCCC
Confidence 64 899999997532 21 123343333 33456789999999864321 1122222222221 1100101111
Q ss_pred ccccceEEEEe-----eecCCCCCCCceecc-cC--cEEEEeecccCC---CCcccccChHHHHHHHHH
Q 001280 184 NDFNTFYMQAA-----SGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 184 ~~~~~~~i~~~-----a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falPi~~i~~~l~~ 241 (1108)
.+ ..|=+. ...-.|.|||||+-. +| .++||.+.+..- ..-+.+.-+...+..++.
T Consensus 177 ~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~ 242 (247)
T 1ddj_A 177 QS---TELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEG 242 (247)
T ss_dssp CT---TEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECGGGCCBBTTBCEEEEEGGGSHHHHHH
T ss_pred cC---CeEeecCCCCCCccccCcCcCcEEEEECCcEEEEEEEEECCCCCCCCCCEEEEEhHHhHHHHHH
Confidence 11 122221 234579999999843 34 599999876421 122334444444444443
No 410
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.08 E-value=5.3e-06 Score=80.57 Aligned_cols=59 Identities=29% Similarity=0.436 Sum_probs=50.5
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC-CCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG-VDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~-~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++... .|+.|.|+|.|++.
T Consensus 43 ~~v~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 106 (129)
T 2kpk_A 43 EFLQI-KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYP 106 (129)
T ss_dssp EEEEE-EEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred CCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 45666 79999999999 9 99999999999999985 67787888654 48899999999864
No 411
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=1.2e-06 Score=84.67 Aligned_cols=59 Identities=29% Similarity=0.508 Sum_probs=52.1
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ ||++||+|++|||+.|. ++.++..++... |+.+.|+|.|+++
T Consensus 60 ~~gv~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 60 MDTIFV-KQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp CCCCCB-CCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence 366776 79999999999 99999999999999998 888888888654 8999999999875
No 412
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.07 E-value=6.2e-06 Score=79.45 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=51.1
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++.. +..+.|. +.|++..
T Consensus 52 gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~--~~~v~l~-v~R~~~~ 113 (124)
T 2daz_A 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA--PSKVKLV-FIRNEDA 113 (124)
T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS--CSEEEEE-EEECTTH
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEeCCCc
Confidence 89999999999999999 99999999999999966 77888888764 4588998 6777654
No 413
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A
Probab=98.07 E-value=6.5e-05 Score=78.30 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=112.2
Q ss_pred hCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecCCeEEeEE-----EEEEcCCCce
Q 001280 45 VVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVY-----PIYRDPVHDF 119 (1108)
Q Consensus 45 ~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d~~~~~a~-----vv~~d~~~Dl 119 (1108)
+...|+.|.... ......--|+.... ||+||+|........+.+++..|+. ... -+..=+..|+
T Consensus 22 Ia~~ic~l~n~s-------dg~~~~l~gigyG~---~iItn~HLf~~nnG~L~I~s~hG~f-~v~nt~~lki~~i~g~Di 90 (229)
T 1lvm_A 22 ISSTICHLTNES-------DGHTTSLYGIGFGP---FIITNKHLFRRNNGTLLVQSLHGVF-KVKNTTTLQQHLIDGRDM 90 (229)
T ss_dssp HHTTEEEEEEEE-------TTEEEEEEEEEETT---EEEECGGGGGCCSSEEEEEETTEEE-EESCGGGSEEEECTTSSC
T ss_pred hheEEEEEEecc-------CCceEEEEEEeECC---EEEeChhhhccCCCcEEEEeCCCeE-EeCCCCceeeEEeCCccE
Confidence 445677777653 11223335666654 9999999999766788888776643 221 2445577899
Q ss_pred EEEEECCCCcccccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCcccccceEEEEeeecCC
Q 001280 120 GFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKG 199 (1108)
Q Consensus 120 AlLk~d~~~~~~~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~is~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~ 199 (1108)
.++|.. +++|+.+- .+.-..++.||+|..||..+..+...+. +|.-....|.. +..+...-.++..
T Consensus 91 iiIrmP-kDfpPf~~---~l~FR~P~~~e~V~lVg~~fq~k~~~s~--vSesS~i~p~~--------~~~fWkHwIsT~~ 156 (229)
T 1lvm_A 91 IIIRMP-KDFPPFPQ---KLKFREPQREERICLVTTNFQTKSMSSM--VSDTSCTFPSS--------DGIFWKHWIQTKD 156 (229)
T ss_dssp EEEECC-TTSCCCCS---CCCBCCCCTTCEEEEEEEECSSSSCEEE--ECCCEECEEET--------TTTEEEECBCCCT
T ss_pred EEEeCC-CcCCCccc---ccccCCCCCCCeEEEEEeEeecCCccEE--ECCcceeEecC--------CCCEeEEEeeCCC
Confidence 999994 44443221 1123568999999999987665533221 22221111111 1224777788999
Q ss_pred CCCCCceec-ccCcEEEEeecccCCCCcccccChHH-HHHHHHHH
Q 001280 200 GSSGSPVID-WQGRAVALNAGSKSSSASAFFLPLER-VVRALRFL 242 (1108)
Q Consensus 200 G~SGgPv~n-~~G~vVGi~~~~~~~~~~~falPi~~-i~~~l~~l 242 (1108)
|+-|.|+++ .||++|||++........+|+.|+.. +..+|+..
T Consensus 157 G~CGlPlVs~~Dg~IVGiHsl~~~~~~~NyF~~f~~~f~~~L~~~ 201 (229)
T 1lvm_A 157 GQCGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTNQ 201 (229)
T ss_dssp TCTTCEEEETTTCCEEEEEEEEETTSCSEEEEECCTTHHHHHHCG
T ss_pred CcCCCcEEECCCCcEEEEEcccccCCCeEEEeCCCHHHHHHHhcc
Confidence 999999998 68999999999887778899977743 33555443
No 414
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.07 E-value=1e-05 Score=74.20 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=47.4
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcC-CCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDG-VDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~-~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.+. |++ ||++||+|++|||+.+.++ .++..++... .|+.+.|+|.|+++
T Consensus 32 ~Gv~V-~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 32 TGQRV-KQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp TEEEE-EEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred CCEEE-EEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence 47777 588873 566 9999999999999999875 7888888765 58999999999875
No 415
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.07 E-value=3.4e-06 Score=78.98 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=48.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.++. ++..++.. .++.+.|+|.|++.
T Consensus 39 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 39 KLGIFV-KTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN-TKGNVRFVIGREKP 101 (107)
T ss_dssp EEEEEE-EEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH-CCSEEEEEEEEECC
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Confidence 467776 79999999999 9 9999999999999998644 44444443 58899999999754
No 416
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=98.06 E-value=0.00011 Score=78.83 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=100.8
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-CeEEEEEecC---------CeEEeEEEEEEcC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN---------REEIPVYPIYRDP 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-~~~~~v~~~d---------~~~~~a~vv~~d~ 115 (1108)
.|-+|+|.... .....++|.+|+++ +|||+|||+... +..+.+.+.. .+.+..+-+..||
T Consensus 12 ~Pw~v~l~~~~--------~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp 81 (238)
T 1ym0_A 12 FPWQVSVRRKS--------SDSHFCGGSIINDR--WVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNE 81 (238)
T ss_dssp STTEEEEEEGG--------GTEEEEEEEEEETT--EEEECHHHHTTCCGGGEEEEESCSBTTSCCSSCEEEEEEEEEECT
T ss_pred cCCEEEEEeCC--------CCceEEEEEEeeCC--EEEECHHhCCCCCCceEEEEEcccccCCCCCCceEEEEEEEEECC
Confidence 35678876531 12467999999965 999999999753 2445665542 3456677677776
Q ss_pred C-------CceEEEEECCCC-cccccccCCCCCCcc-cCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCC
Q 001280 116 V-------HDFGFFRYDPSA-IQFLNYDEIPLAPEA-ACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHY 178 (1108)
Q Consensus 116 ~-------~DlAlLk~d~~~-~~~~~~~~l~l~~~~-~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~ 178 (1108)
. +||||||++..- +. ..+.++.|.... ...|+.+.+.|+..... .......+.-+... ...|
T Consensus 82 ~y~~~~~~~DIALl~L~~~~~~~-~~v~picLp~~~~~~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~ 160 (238)
T 1ym0_A 82 NYDPATLENDVSVIKTAVAITFD-INVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY 160 (238)
T ss_dssp TCCTTTCTTCCEEEEESSCCCCS-SSCCCCBCCCTTCCCTTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHHHHHHC
T ss_pred CCCCCCCcccEEEEEeCCCcccc-CcccccCCCCCcCCCCCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHHHhHhh
Confidence 4 699999997432 11 123444443222 12899999999864321 11222222222110 0001
Q ss_pred CCCCcccccceEEEEe-------eecCCCCCCCceecc--cC--cEEEEeecccCC--CCcccccChHHHHHHHHH
Q 001280 179 KKDGYNDFNTFYMQAA-------SGTKGGSSGSPVIDW--QG--RAVALNAGSKSS--SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 179 ~~~~~~~~~~~~i~~~-------a~~~~G~SGgPv~n~--~G--~vVGi~~~~~~~--~~~~falPi~~i~~~l~~ 241 (1108)
......+ .+|=+. ...-.|.|||||+-. +| .++||.+.+..- ...+.+..+...+..+++
T Consensus 161 ~~~~~~~---~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~~~~p~vyt~v~~~~~WI~~ 233 (238)
T 1ym0_A 161 TSDTIYD---DMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASGYPGVYSRVGFHAGWITD 233 (238)
T ss_dssp TTSCCCT---TEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSSSSSSSCEEEEEHHHHHHHHHH
T ss_pred cccccCC---CeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCCCCCCCCcEEEEHHHhHHHHHH
Confidence 1101111 122221 345569999999854 35 699999876421 122344555555555543
No 417
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Probab=98.06 E-value=1e-05 Score=88.50 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=80.5
Q ss_pred HhCCceEEEEEeeeeccCCCCCCccEEEEEEEeCC----CcEEEEcccccCCC---CeEEEEEecC--------------
Q 001280 44 KVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKR----RGIILTNRHVVKPG---PVVAEAMFVN-------------- 102 (1108)
Q Consensus 44 ~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~----~G~ILTn~HVV~~~---~~~~~v~~~d-------------- 102 (1108)
...++|++|... +...++|++|+.. ..||||++||+... ...+.+.+..
T Consensus 20 ~~~~aV~rl~~~----------g~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~~~~~~~v~~~~~~~~c~~~~~~~~~ 89 (268)
T 1arb_A 20 DIIRAVGAYSKS----------GTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASG 89 (268)
T ss_dssp TGGGGEEEEEET----------TEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGG
T ss_pred HhhceEEEEEeC----------CccEEeEEEEcCCCCCCCCEEEEcHHhCCCccCcceEEEEEeCCCCCccccccccccc
Confidence 467889998642 3467999999951 14999999999742 1234444421
Q ss_pred --------CeEEeEEEEEEcCCCceEEEEECCCCccc------ccccCCCCCCcccCCCCEEEEEecCCCCCCeEEEEEE
Q 001280 103 --------REEIPVYPIYRDPVHDFGFFRYDPSAIQF------LNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTL 168 (1108)
Q Consensus 103 --------~~~~~a~vv~~d~~~DlAlLk~d~~~~~~------~~~~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~i 168 (1108)
...+...++.....+||||||++... +. .-++. .. ..+.....+..|.+....+....+
T Consensus 90 ~~~~~~~~~~~v~~~i~h~~~~nDIALLrL~~~v-~~~~~~~vsGWG~----t~--~~~~~~~~~~~~~~~l~~i~~~~~ 162 (268)
T 1arb_A 90 ANGDGSMSQTQSGSTVKATYATSDFTLLELNNAA-NPAFNLFWAGWDR----RD--QNYPGAIAIHHPNVAEKRISNSTS 162 (268)
T ss_dssp SCCCCCCCCEEECEEEEEEETTTTEEEEEESSCC-CGGGCCEEBCEEC----CS--CCCSCEEEEECGGGCSCEEEEECS
T ss_pred cccCCcceEEeccceEecCCCCCceEEEEecCCC-CCCCceEEeCcCc----cC--CCCCcceeeccCCcccEEEEeecc
Confidence 01123334444567999999997531 10 00000 00 011112222333322222222111
Q ss_pred EEecCCCCCCCCCCcccccceEEEEe-----eecCCCCCCCceecccCcEEEEeeccc
Q 001280 169 ARLDRDAPHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1108)
Q Consensus 169 s~~~~~~~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1108)
... ...|+. .+.+ .+|.+. ...-.|+|||||+..+++++||++.+.
T Consensus 163 ~~~---~~~~~~-~~~~---~~iCag~~~~~gdtC~gdsGgPl~~~~~~~~Gi~s~g~ 213 (268)
T 1arb_A 163 PTS---FVAWGG-GAGT---THLNVQWQPSGGVTEPGSSGSPIYSPEKRVLGQLHGGP 213 (268)
T ss_dssp CCE---EECTTS-SSCS---SEEEEECCTTSCCCCTTCTTCEEECTTSCEEEEEEECS
T ss_pred ccc---cccccc-cccC---CeEEEeeecCCCCCccCcccCCcEeeCCEEEEEEeecC
Confidence 100 011221 1111 123332 135689999999987899999998764
No 418
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.06 E-value=2.6e-06 Score=81.60 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=48.6
Q ss_pred ceEEEEeecCCCHHhHh--ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEE
Q 001280 899 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIE 965 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a--L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~ 965 (1108)
.+++|..|.++|||+++ |++||+|++|||+++.++...+........+ +++.|+|.|+|+..+
T Consensus 53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~----~~v~l~v~r~g~~~~ 117 (120)
T 2iwo_A 53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS----GSIEMQVVAGGDVSE 117 (120)
T ss_dssp EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC----SEEEEEEECCTTSSS
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEECCccce
Confidence 57889999999999976 9999999999999999854333322222333 679999999886543
No 419
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.06 E-value=3.9e-06 Score=81.34 Aligned_cols=59 Identities=20% Similarity=0.401 Sum_probs=51.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC---ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT---QFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~---~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.+++||++ | |++||+|++|||+.+. ++.++..++.. .++.|.|+|.|+..
T Consensus 53 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 53 KVDIFV-KDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVAREPV 116 (128)
T ss_dssp CEEEEE-ECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEECCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 357777 69999999999 9 9999999999999998 77888777765 67899999999754
No 420
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.05 E-value=4.8e-06 Score=78.14 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=50.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++....++.|.|+|.|.
T Consensus 43 ~~g~~V-~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~ 104 (108)
T 2d92_A 43 RSVIVI-RSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104 (108)
T ss_dssp CEEEEE-EEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 467776 79999999999 9 99999999999999965 77888888776667899999885
No 421
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=5.2e-06 Score=78.71 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=46.8
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.++++. ..+.|+ +.|.
T Consensus 45 gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~----~~v~l~-v~R~ 100 (114)
T 2d8i_A 45 RLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ----PSLGLL-VRTY 100 (114)
T ss_dssp EEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS----SEEEEE-EEEC
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC----CcEEEE-EEEC
Confidence 7899999999999999999999999999999998 5788888874 367777 4553
No 422
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.05 E-value=9.2e-06 Score=76.03 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=49.6
Q ss_pred CeEEEEEecCCChhhhc-CCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.+++|..|.++|||+++ ||++||.|++|||+++.+ ++++...++. .++.+.|. +.|.+
T Consensus 41 ~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~ 101 (107)
T 1uhp_A 41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT--AKEPIVVQ-VLRRT 101 (107)
T ss_dssp CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH--CCSSEEEE-EEECC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCcEEEE-EEeCC
Confidence 48899999999999999 999999999999999976 6778888886 36778888 55543
No 423
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Probab=98.05 E-value=8.5e-05 Score=80.23 Aligned_cols=178 Identities=14% Similarity=0.214 Sum_probs=98.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec---------CCeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~---------d~~~~~a~vv~~d~~ 116 (1108)
.|-+|+|... .....++|.+|+++ +|||+||++..... .+++. ..+.+..+-+..||.
T Consensus 27 ~Pw~v~l~~~---------~~~~~CgGtLI~~~--~VLTAAHC~~~~~~--~v~~G~~~~~~~~~~~~~~~v~~i~~hp~ 93 (245)
T 1t8o_A 27 WPWQVSLQDK---------TGFHFCGGSLINEN--WVVTAAHCGVTTSD--VVVAGEFDQGSSSEKIQKLKIAKVFKNSK 93 (245)
T ss_dssp STTEEEEECT---------TCCEEEEEEEEETT--EEEECGGGCCCTTS--EEEESCSBTTCSSSCCEEEEEEEEEECTT
T ss_pred CCceEEEEcC---------CCCeEEEEEEeeCC--EEEEcHHhCcCCCc--EEEEeeeecCCCCCCcEEEEEEEEEeCCC
Confidence 4667777642 12457999999965 99999999975333 33332 234566666777764
Q ss_pred -------CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCC
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHY 178 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~~~--~~~~ 178 (1108)
+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+... ...|
T Consensus 94 y~~~~~~~DIALl~L~~~~~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~ 172 (245)
T 1t8o_A 94 YNSLTINNDITLLKLSTAASFS-QTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYW 172 (245)
T ss_dssp CCTTTCCSCCEEEEESSCCCCB-TTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEEEEEEECHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCcCC-CceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEEEEeeEcchhhhHhh
Confidence 699999997532 21 123444443 33467899999999864321 11222222222110 0001
Q ss_pred CCCCcccccceEEEE---eeecCCCCCCCceecc-cC--cEEEEeecccCC---CCcccccChHHHHHHHHH
Q 001280 179 KKDGYNDFNTFYMQA---ASGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 179 ~~~~~~~~~~~~i~~---~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falPi~~i~~~l~~ 241 (1108)
+. ...+ .+|=+ ....-.|.|||||+-. +| .++||.+.+..- ..-+.+.-+...+..+++
T Consensus 173 ~~-~~~~---~~~Ca~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~ 240 (245)
T 1t8o_A 173 GT-KIKD---AMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQ 240 (245)
T ss_dssp GG-GCCT---TEEEEECSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTSEEEEEEGGGTHHHHHH
T ss_pred cC-cCCC---ceEEccCCCCccCcccCcCCEEEEECCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHH
Confidence 10 0111 11211 1234579999999853 45 799999876432 122344444444444443
No 424
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=4.6e-06 Score=79.89 Aligned_cols=60 Identities=23% Similarity=0.428 Sum_probs=49.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.+++||++ | |++||+|++|||+.|.++. ++..++.. .++.|.|+|.|+++.
T Consensus 46 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~ 109 (120)
T 2eno_A 46 DSGIYV-SRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHRLQV 109 (120)
T ss_dssp CCSEEE-EEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH-HCSEEEEEEEEEEEC
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 567777 69999999999 9 9999999999999999965 44455543 478999999997663
No 425
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.05 E-value=3.6e-06 Score=77.86 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=48.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.+++| ..|.+++||++ ||++||+|++|||+.+.+ +.++..++... ++++.|+|.|++.
T Consensus 36 ~~~~V-~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~~ 96 (100)
T 1whd_A 36 SPVRV-QAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRVSG 96 (100)
T ss_dssp SSCBC-CBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEECCS
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCC
Confidence 56666 79999999999 999999999999999995 47777777553 5569999999753
No 426
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B
Probab=98.04 E-value=5.3e-05 Score=81.09 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=90.4
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC---CeEEEEEec----------CCeEEeEEEEE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG---PVVAEAMFV----------NREEIPVYPIY 112 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~---~~~~~v~~~----------d~~~~~a~vv~ 112 (1108)
.|-+|+|... ....++|.+|+++ +|||+|||+... +....+.+. ....+..+-+.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~ 79 (235)
T 4dgj_A 12 WPWVVGLYYD----------DRLLCGASLVSSD--WLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIV 79 (235)
T ss_dssp STTEEEEEET----------TEEEEEEEECSSS--EEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCTTCEEEEEEEEE
T ss_pred CCcEEEEeeC----------CCeEEEEEEeeCC--EEEECHHhcCCCCCCCccEEEEEeeecccccCCCceeEEeEEEEE
Confidence 4567887652 2467999999965 999999999532 233445443 12345566677
Q ss_pred EcCC-------CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--C
Q 001280 113 RDPV-------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--A 175 (1108)
Q Consensus 113 ~d~~-------~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~ 175 (1108)
.||. +|||||+++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+... .
T Consensus 80 ~hp~y~~~~~~~DiALl~L~~~~~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~ 158 (235)
T 4dgj_A 80 INPHYNRRRKDNDIAMMHLEFKVNYT-DYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQ 158 (235)
T ss_dssp ECTTCBTTTTBTCCEEEEESSCCCCB-TTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTCCBCSBCEEEEEEEECHHHHH
T ss_pred ECCCCCCCCCCCeEEEEEECCccccC-CcccccCCCCcccCCCCCCEEEEEecccCCCCCccchhheEeEeeecCHHHhh
Confidence 7776 699999997432 11 123444443 33456899999999853211 11222222222110 0
Q ss_pred CCCCCCCcccccceEEEE-----eeecCCCCCCCceecc-cC--cEEEEeeccc
Q 001280 176 PHYKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSK 221 (1108)
Q Consensus 176 ~~~~~~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~ 221 (1108)
..|......+ .++=+ ....-.|.|||||+-. +| .++||.+.+.
T Consensus 159 ~~~~~~~~~~---~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~Gi~S~g~ 209 (235)
T 4dgj_A 159 QQMPEYNITE---NMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGY 209 (235)
T ss_dssp HHCTTSCCCT---TEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECS
T ss_pred hhccCccCCC---CeEeecCCCCCCccCCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 0011111111 12222 1234579999999854 44 4999998764
No 427
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.04 E-value=4.6e-06 Score=79.25 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=49.1
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .++.|.|+|.|+++.
T Consensus 43 ~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 105 (116)
T 2dm8_A 43 NAIVI-HEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQ-TPQKVRLVVYRDEAH 105 (116)
T ss_dssp SSEEC-CCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHT-CCSEEEEEEECCSSC
T ss_pred CCEEE-EEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCcc
Confidence 46666 79999999999 9 99999999999999988 5566655544 348899999998874
No 428
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.04 E-value=3.7e-06 Score=81.82 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=51.5
Q ss_pred eEEEEEecCCChhhhc-CCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
+++|..|.+||||+++ ||++||.|++|||+++.+ ++++++.++..+ ++.+.|. +.|++
T Consensus 58 ~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l~-v~r~~ 118 (130)
T 1i16_A 58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP-DGPVTIV-IRRKS 118 (130)
T ss_dssp CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC-SSEEEEE-EEEES
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CceEEEE-EEeCC
Confidence 6899999999999999 999999999999999988 699999999865 7778888 56654
No 429
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2
Probab=98.04 E-value=0.00014 Score=78.90 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=92.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC----------CeEEeEEEEEEcC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN----------REEIPVYPIYRDP 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d----------~~~~~a~vv~~d~ 115 (1108)
.|-+|+|.... .......++|.+|+++ +|||+||++. ......|.+.. ...+..+-+..||
T Consensus 25 ~Pw~v~l~~~~------~~~~~~~CgGtLIs~~--~VLTAAHC~~-~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~Hp 95 (251)
T 1pyt_D 25 WPWQISLQYLR------DNTWRHTCGGTLITPN--HVLTAAHCIS-NTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHE 95 (251)
T ss_dssp STTEEEEEEEE------TTEEEEEEEEEEEETT--EEEECGGGCC-TTCCEEEEESCSBTTCSCCSSCEEEEEEEEEECT
T ss_pred CCceEEEEEEc------CCCcceEEEeEEecCC--EEEECHHHhC-CCceEEEEEcccccccCCCCCcEEEEEEEEEECC
Confidence 46788887532 1112457999999965 9999999998 44556666532 2345666677776
Q ss_pred C-------CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CCCC
Q 001280 116 V-------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DAPH 177 (1108)
Q Consensus 116 ~-------~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~---~~~~ 177 (1108)
. +||||||++..- +. ..+.++.|. ...+..|..+.+.|+..... .......+..+.. ....
T Consensus 96 ~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~ 174 (251)
T 1pyt_D 96 KWNSFLVRNDIALIKLAETVELG-DTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRD 174 (251)
T ss_dssp TCBTTTTBSCCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHHHHTSTT
T ss_pred CCCCCCCCCCEEEEEECCCcccC-CCeeeeEcCCCcccCCCCCEEEEEecccCCCCCCcccchheeEeEeeCHHHcchhh
Confidence 5 699999997532 11 123344443 33456799999999764321 1111111111111 1000
Q ss_pred CCCCCcccccceEEEEe----eecCCCCCCCceecc-cC--cEEEEeeccc
Q 001280 178 YKKDGYNDFNTFYMQAA----SGTKGGSSGSPVIDW-QG--RAVALNAGSK 221 (1108)
Q Consensus 178 ~~~~~~~~~~~~~i~~~----a~~~~G~SGgPv~n~-~G--~vVGi~~~~~ 221 (1108)
+......+ .+|=+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 175 ~~~~~~~~---~~~Ca~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~ 222 (251)
T 1pyt_D 175 WWGTTVKE---TMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFGS 222 (251)
T ss_dssp TTTTTCCT---TEEEECCSCSSCCCCSCTTCEEEEESSSSEEEEEEEEECC
T ss_pred ccCCCcCC---CeEEecCCCCCccCCCCCCCceEEEECCCEEEEEEEEECC
Confidence 00001111 122221 134578999999853 46 6999998764
No 430
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.03 E-value=5.1e-06 Score=77.20 Aligned_cols=58 Identities=33% Similarity=0.572 Sum_probs=47.5
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhH--HHHHHhcCCCCeEEEEEEECC
Q 001280 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLK--LETLLDDGVDKNIELLIERGG 355 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~--l~~~l~~~~g~~v~l~V~R~g 355 (1108)
..|++| ..|.++|||++||++||+|++|||+.+.++.+ +...+. ..|+.+.|+|.|+.
T Consensus 42 ~~gv~V-~~V~~~spA~~gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 42 DDGIFV-TRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVREV 101 (103)
T ss_dssp CCSEEC-CCBSSSSTTSSSCCTTCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEEEECCC
T ss_pred CCCEEE-EEECCCCchHHCCCCCCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEEEEecC
Confidence 467777 79999999999999999999999999988544 434443 46889999999863
No 431
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.03 E-value=1.9e-06 Score=81.36 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=51.8
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceEEEEEEEeCCe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1068 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v~l~~v~rdg~ 1068 (1108)
.+++|..|.++|||+++| |++||.|++|||+++. +++++...++. .++.++|. +.|+..
T Consensus 44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 105 (111)
T 1uju_A 44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS--VGDTLTVL-VCDGFE 105 (111)
T ss_dssp CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS--CSSEEEEC-CCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECCC
Confidence 488999999999999999 9999999999999999 78999999886 47888887 566543
No 432
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=98.03 E-value=4.4e-05 Score=84.45 Aligned_cols=187 Identities=9% Similarity=0.054 Sum_probs=102.4
Q ss_pred HHhCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec------CCeEEeEEEEEEcCC
Q 001280 43 NKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV------NREEIPVYPIYRDPV 116 (1108)
Q Consensus 43 ~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~------d~~~~~a~vv~~d~~ 116 (1108)
..-.|-+|.|... .....++|.+|+++ +|||+||++.. ...+.|.+. ....+.++-+..||.
T Consensus 61 ~~~~Pw~v~l~~~---------~~~~~CgGtLI~~~--~VLTAAHC~~~-~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~ 128 (283)
T 3f1s_B 61 LQDLPWQVKLTNS---------EGKDFCGGVIIREN--FVLTTAKCSLL-HRNITVKTYFNRTSQDPLMIKITHVHVHMR 128 (283)
T ss_dssp --CCTTEEEEECT---------TSCEEEEEEEEETT--EEEECHHHHTS-CSSCEEEECTTC-CCCCEEEEEEEEEECTT
T ss_pred ccccCCEEEEEec---------CCCeeeccEEecCC--EEEEcHHhcCc-cCceEEEEeeeeCCCCcEEEEeEEEEECCC
Confidence 3456778888642 13467999999965 99999999974 344566654 345677777777774
Q ss_pred -------CceEEEEECCCC-cccccccCCCCCCc-----ccCCCCEEEEEecCCCCC---CeEEEEEEEEecCC--CCCC
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPLAPE-----AACVGLEIRVVGNDSGEK---VSILAGTLARLDRD--APHY 178 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l~~~-----~~~~G~~V~~iG~p~g~~---~si~~G~is~~~~~--~~~~ 178 (1108)
+||||||++..- +. ..+.++.|... .+..|+..++.|+..... .......+..+... ...|
T Consensus 129 y~~~~~~nDIALl~L~~pv~~~-~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~v~~~~~~~C~~~~ 207 (283)
T 3f1s_B 129 YDADAGENDLSLLELEWPIQCP-GAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEECGQVL 207 (283)
T ss_dssp CBTTTTBTCCEEEEESSCCCTT-TTCCCCBCCCHHHHHHTTTTTSCEEEEECBCC-------CEEEEEEEECHHHHHHHH
T ss_pred CCCCCCCCCEEEEEeCCcccCC-CCEEeEECCCCccccccccCCCEEEEEECCCCCCCCCceeeEEEEeEeCHHHHhhhh
Confidence 599999997532 21 13444445432 357899999999864111 11111122222110 0001
Q ss_pred CCCCcccccceEEEEeeecCCCCCCCceec-ccCc--EEEEeecccCC--CCcccccChHHHHHHHHHHHh
Q 001280 179 KKDGYNDFNTFYMQAASGTKGGSSGSPVID-WQGR--AVALNAGSKSS--SASAFFLPLERVVRALRFLQE 244 (1108)
Q Consensus 179 ~~~~~~~~~~~~i~~~a~~~~G~SGgPv~n-~~G~--vVGi~~~~~~~--~~~~falPi~~i~~~l~~l~~ 244 (1108)
+. ...+ +............|.|||||+- .+|+ ++||.+.+.-. ...+.+.-+...+..+++..+
T Consensus 208 ~~-~~~~-~~~Ca~~~~~~~~gDSGgPlv~~~~~~~~l~GIvS~g~c~~~~~p~vyt~V~~y~~WI~~~~~ 276 (283)
T 3f1s_B 208 NV-TVTT-RTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLGSQPVGGQAHMVLVTKVSRYSLWFKQIMN 276 (283)
T ss_dssp TS-CCCT-TEEEEECSSCGGGBCTTCEEEEECSSCEEEEEEECCCSGGGCSSEEEEEEGGGGHHHHHHHHT
T ss_pred cC-CCCC-CeEcccCCCCCCCCCCCCcEEEEECCEEEEEEEEEeCCCCCCCcceEEEEhHHhHHHHHHHhh
Confidence 10 0111 1111111112335799999985 4566 99999764311 122344555555555554443
No 433
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=98.01 E-value=1.1e-05 Score=71.64 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=45.0
Q ss_pred EEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEE
Q 001280 1010 YVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRT 1062 (1108)
Q Consensus 1010 ~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~ 1062 (1108)
+|.++.++|||+++||++||.|++|||+++.. .++.++.+++ .++.|+|++
T Consensus 26 ~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~--~g~~V~L~v 78 (82)
T 1r6j_A 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILST--SGTVVTITI 78 (82)
T ss_dssp EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH--SCSEEEEEE
T ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCEEEEEE
Confidence 47899999999999999999999999999965 4789999984 488899883
No 434
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.01 E-value=5.6e-06 Score=78.45 Aligned_cols=60 Identities=25% Similarity=0.443 Sum_probs=49.0
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhH--HHHHHhcCCCCeEEEEEEEC-CEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLK--LETLLDDGVDKNIELLIERG-GISM 358 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~--l~~~l~~~~g~~v~l~V~R~-g~~~ 358 (1108)
..|++| ..|.+++||++ ||++||+|++|||+++.++.+ +..++... +.+.|+|.|+ |+.+
T Consensus 40 ~~gv~V-~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~--~~v~l~v~r~~g~~~ 103 (114)
T 1x5n_A 40 KPGIFI-SHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS--RSLTISIVAAAGREL 103 (114)
T ss_dssp SCSEEE-EEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC--SSEEEEECSSTTTHH
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEcCCCCce
Confidence 467776 79999999999 999999999999999999865 44444433 5899999998 7643
No 435
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.01 E-value=2.2e-05 Score=90.92 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=66.5
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCe---EEEEEEEeCCccC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK---PRVLTLKQDLHYW 1081 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~---~~~~~lk~d~~y~ 1081 (1108)
.+++|..+.++|||+++||++||+|++|||+++.++ +++.+.++. +.|+.++|+ +.|+|. ++.++|+.+..--
T Consensus 99 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~-v~r~g~~~~~~~~~l~r~~i~~ 176 (388)
T 1fc6_A 99 KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG-EADSQVEVV-LHAPGAPSNTRTLQLTRQKVTI 176 (388)
T ss_dssp SCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCB-STTCEEEEE-EEETTEEEEEEEEEEECBCCCC
T ss_pred CcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCCEEEEE-EEeCCCCcceEEEEEEEceeec
Confidence 378999999999999999999999999999999996 889988886 459999999 789998 7888888765544
Q ss_pred cceEE
Q 001280 1082 PTWEL 1086 (1108)
Q Consensus 1082 pt~el 1086 (1108)
++...
T Consensus 177 ~~v~~ 181 (388)
T 1fc6_A 177 NPVTF 181 (388)
T ss_dssp CCEEE
T ss_pred Cceee
Confidence 54443
No 436
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.00 E-value=6.2e-06 Score=78.18 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=51.1
Q ss_pred ceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001280 298 GLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 298 G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
+++| ..|.++|||++ ||++||+|++|||+.+.+ +.++..++.. .|+.+.|+|.|+++.
T Consensus 44 ~~~V-~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~ 105 (114)
T 1uew_A 44 PHKI-GRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRIIPQEEL 105 (114)
T ss_dssp SCEE-EEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEECCCSCC
T ss_pred CeEE-EEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 4565 79999999998 999999999999999999 5888888866 789999999998763
No 437
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.00 E-value=4.8e-06 Score=79.33 Aligned_cols=56 Identities=21% Similarity=0.289 Sum_probs=49.0
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEe
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHL 1065 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~r 1065 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.+ +++++..++. .++.++|. +.|
T Consensus 50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~r 108 (117)
T 2ehr_A 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN--AGNPVVFI-VQS 108 (117)
T ss_dssp CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT--SCSSEEEE-ECC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEE
Confidence 489999999999999999 99999999999999976 6788888886 37888888 444
No 438
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=7.8e-06 Score=74.32 Aligned_cols=59 Identities=29% Similarity=0.495 Sum_probs=47.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .++.+.|+|.|++.
T Consensus 29 ~~~~~V-~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~ 91 (93)
T 2dkr_A 29 NSPIYI-SRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA-AQGSVKLVVRSGPS 91 (93)
T ss_dssp SCCCEE-EEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHH-CCSEEEEEECCCCS
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEeCCC
Confidence 467777 79999999999 7 99999999999999996 4566655544 35689999998653
No 439
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Probab=97.99 E-value=1.5e-05 Score=85.81 Aligned_cols=162 Identities=14% Similarity=0.105 Sum_probs=86.9
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec--CC---------eEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV--NR---------EEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~--d~---------~~~~a~vv~~d 114 (1108)
.|-+|+|.... .......++|.+|+++ +|||+|||+.. ...+.|.+. +. ..+.++-+..|
T Consensus 10 ~Pw~v~l~~~~------~~~~~~~CgGtLIs~~--~VLTAAhC~~~-~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~H 80 (240)
T 1fon_A 10 WSWQVSLQYEK------DGAFHHTCGGSLIAPD--WVVTAGHCIST-SRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVH 80 (240)
T ss_dssp EEEEEEEEEEE------TTEEEEEECCEEEETT--EEEECGGGCCT-TSCEEEEEEEEETTEEEEEEEEEEECTTSEEEC
T ss_pred cccEEEEEEec------CCcEeeEEEEEEeeCC--EEEECHHHCCC-CCceEEEeeeeeccccCCCceeEeeeeeEEEEC
Confidence 35677776531 1111357999999965 99999999984 334455443 11 11222224455
Q ss_pred CC---------CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---C
Q 001280 115 PV---------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---D 174 (1108)
Q Consensus 115 ~~---------~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~---~ 174 (1108)
|. +|||||+++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+.. .
T Consensus 81 p~y~~~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~ 159 (240)
T 1fon_A 81 PLWNSNCVACGNDIALVKLSRSAQLG-DKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCS 159 (240)
T ss_dssp TTCCTTCGGGCCCCEEEECSSCCCCT-TSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHT
T ss_pred CCCcCCCccCCCCEEEEEecCccccC-CcccccCCCCcccCCCCCCeEEEEEEeEcCCCCCCChhheEEEEeeeCHHHhc
Confidence 43 799999997532 11 123344443 33467899999999864321 1122222222211 1
Q ss_pred CC-CCCCCCcccccceEEEEe---eecCCCCCCCceecc--cC--cEEEEeeccc
Q 001280 175 AP-HYKKDGYNDFNTFYMQAA---SGTKGGSSGSPVIDW--QG--RAVALNAGSK 221 (1108)
Q Consensus 175 ~~-~~~~~~~~~~~~~~i~~~---a~~~~G~SGgPv~n~--~G--~vVGi~~~~~ 221 (1108)
.. .++. ...+ .+|=+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 160 ~~~~~~~-~~~~---~~~Ca~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~ 210 (240)
T 1fon_A 160 QWDWWGI-TVKK---TMVCAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVS 210 (240)
T ss_dssp STTTTGG-GCCT---TEEEECCSSSCSTTSCTTCEEEEECSSSCEEEEEEEEECC
T ss_pred cceecCC-cccc---ceEeecCCCCcccCCCCCCeEEeEcCCCCEEEEEEEEEcC
Confidence 00 0110 0111 122221 234579999999842 56 8999998764
No 440
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=97.99 E-value=1.1e-05 Score=78.77 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=48.5
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ ||+.||+|++|||+.+.+ +.++..++.. .|+.+.|+|.|...
T Consensus 65 ~gv~V-~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 65 ALQYL-ESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVTR 125 (132)
T ss_dssp CSEEE-EEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHHH-TTTEEEEEEECCCC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 57777 69999999999 999999999999999986 4555555554 67899999988654
No 441
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.99 E-value=6.7e-06 Score=78.51 Aligned_cols=57 Identities=25% Similarity=0.305 Sum_probs=50.2
Q ss_pred eEEEEEecCCChhhhc-CCCCCCEEEEECCeecCC--HHHHHHHHHcCC--CCceEEEEEEEe
Q 001280 1008 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIE--HGEFVRVRTVHL 1065 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~--~~~~v~l~~v~r 1065 (1108)
.++|.+|.++|||+++ ||++||.|++|||+++.+ ++++.+.++... .++.++|+ +.|
T Consensus 44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~-v~r 105 (118)
T 1v6b_A 44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV-VAV 105 (118)
T ss_dssp SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEE-EEC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEE-EEe
Confidence 4899999999999999 999999999999999998 789999998752 38889998 555
No 442
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.98 E-value=6e-06 Score=78.91 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=51.6
Q ss_pred eEEEEEecCCChhhhc--CCCCCCEEEEECCeecCC--HHHHHHHHHcCCC--CceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRY--GLYALQWIVEINGKRTPD--LEAFVNVTKEIEH--GEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~--GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~--~~~v~l~~v~rdg~~ 1069 (1108)
+++|..|.++|||+++ ||++||.|++|||+++.+ ++++.+.++.... +..++|. +.|++..
T Consensus 42 ~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~-v~R~~~~ 108 (119)
T 2cs5_A 42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL-VRPNAVY 108 (119)
T ss_dssp EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEE-EECCCCC
T ss_pred CeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEE-EEccccc
Confidence 7899999999999999 999999999999999976 5888888887542 2578888 7777543
No 443
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=97.98 E-value=1.2e-05 Score=83.86 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=57.0
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEe---CCeEEEEEEEeC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHL---NGKPRVLTLKQD 1077 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~r---dg~~~~~~lk~d 1077 (1108)
.|++|..|.++|||++ ||++||.|++|||+++.+. .+.+..++.. +..+.|. +.| +|+...++++..
T Consensus 24 ~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~r~~~~G~~~~~~v~~~ 95 (195)
T 2qbw_A 24 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF--QNTVELI-IVREVGNGAKQEIRVRVE 95 (195)
T ss_dssp CSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHC--CSEEEEE-EEEECSSSCEEEEEEEEE
T ss_pred CCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEEcCCCCCCceeEeEee
Confidence 4899999999999999 9999999999999999884 5777777763 4589998 778 898887777664
No 444
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=97.98 E-value=1.5e-05 Score=81.17 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=50.8
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeec--CCHHHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
.+++|..|.+||||+++| |++||.|++|||+++ .++++++..++. .++.++|+ +.|+
T Consensus 111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~g~~v~L~-V~R~ 170 (170)
T 3egg_C 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN--TKGRVRFM-IGRE 170 (170)
T ss_dssp BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH--CCSEEEEE-EEEC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEeC
Confidence 489999999999999999 999999999999999 667899999997 37789988 6664
No 445
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=5.6e-06 Score=77.33 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=49.1
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++...++.. ++.+.|. +.|.+
T Consensus 32 ~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~r~~ 91 (106)
T 2eei_A 32 KGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKS--GSRVMFL-LVDKE 91 (106)
T ss_dssp CSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHH--CSEEEEE-ECCTT
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEcCc
Confidence 37899999999999999999999999999999985 58888888752 6778888 45544
No 446
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=97.98 E-value=9.5e-06 Score=84.47 Aligned_cols=57 Identities=28% Similarity=0.562 Sum_probs=51.0
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ ||++||+|++|||+.|.+ +.++..++.. |+.+.|+|.|+|+
T Consensus 110 ~~~~V-~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 110 CGLFI-SHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIGL 169 (192)
T ss_dssp EEEEE-EEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECCE
T ss_pred CCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECCc
Confidence 46666 79999999999 999999999999999999 8887777755 8999999999988
No 447
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=97.97 E-value=5e-06 Score=80.50 Aligned_cols=59 Identities=29% Similarity=0.402 Sum_probs=50.0
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC------CCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG------VDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~------~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..+|... .++.|.|+|.|++.
T Consensus 55 ~gi~V-~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 55 LGIFI-KSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp EEEEE-EECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 46776 69999999999 8 99999999999999988 55777777543 57899999999865
No 448
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...
Probab=97.97 E-value=3.7e-05 Score=82.74 Aligned_cols=169 Identities=11% Similarity=0.102 Sum_probs=95.2
Q ss_pred ccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcCC-------CceEEEEECCC-Cc
Q 001280 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV-------HDFGFFRYDPS-AI 129 (1108)
Q Consensus 67 ~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~~-------~DlAlLk~d~~-~~ 129 (1108)
...++|.+|+++ +|||+|||+... ..+.|.+.. ...+..+-+..||. +|||||+++.. .+
T Consensus 24 ~~~CgGtLIs~~--~VLTAAhC~~~~-~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~ 100 (241)
T 2jkh_A 24 EGFCGGTILSEF--YILTAAHCLYQA-KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITF 100 (241)
T ss_dssp CEEEEEEECSSS--EEEECGGGGGSC-SSCEEEESCSBTTCCCSCCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCC
T ss_pred CcEEEEEEeeCC--EEEEcHHHcCCC-CcEEEEECCccCCCCCCCcEEEEeEEEEeCCCCCCCCCCCcEEEEEECCcccC
Confidence 467999999965 999999999743 345555532 24566777777764 59999999753 22
Q ss_pred ccccccCCCCCCcc-----cCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCC--CCCCCCCcccccceEEEE----
Q 001280 130 QFLNYDEIPLAPEA-----ACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDA--PHYKKDGYNDFNTFYMQA---- 193 (1108)
Q Consensus 130 ~~~~~~~l~l~~~~-----~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~~--~~~~~~~~~~~~~~~i~~---- 193 (1108)
. ..+.++.|.... +..|+...+.|+..... .......+..+.... ..+.. ...+ .+|=+
T Consensus 101 ~-~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~ 175 (241)
T 2jkh_A 101 R-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSF-IITQ---NMFCAGYDT 175 (241)
T ss_dssp B-TTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHHHCSS-CCCT---TEEEESCSS
T ss_pred C-CCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEeeeccccHHHhcccccC-cCCC---CeEEeeCCC
Confidence 1 134455554322 46789999999853221 112222232222100 00110 0111 11211
Q ss_pred -eeecCCCCCCCceecc-cC--cEEEEeecccCC---CCcccccChHHHHHHHHHHH
Q 001280 194 -ASGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRALRFLQ 243 (1108)
Q Consensus 194 -~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falPi~~i~~~l~~l~ 243 (1108)
....-.|.|||||+-. +| .++||.+.+..- ...+.+..+...+..+++..
T Consensus 176 ~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~ 232 (241)
T 2jkh_A 176 KQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232 (241)
T ss_dssp SSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHT
T ss_pred CCCccCcCcCCCeeEEEECCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHh
Confidence 1234579999999853 45 599999876522 12344555555556655443
No 449
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=4.9e-06 Score=76.33 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=49.0
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
+++|..|.++|||+ +||++||.|++|||+++.+ +.++...++. .++.+.|. +.|++
T Consensus 32 ~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~ 89 (96)
T 2edv_A 32 PLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE--AEDSLSIT-VVRCT 89 (96)
T ss_dssp SCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH--CSSCEEEE-EEECC
T ss_pred CeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECC
Confidence 67999999999996 9999999999999999977 6778888886 38889998 67765
No 450
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.97 E-value=6.5e-06 Score=76.61 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=50.3
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCC--HHHHHHHHHcC---CCCceEEEEEEEeCC
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEI---EHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~v~~~---~~~~~v~l~~v~rdg 1067 (1108)
.++|..+.++|||+++| |++||.|++|||+++.+ ++++++++++. ..++.+.+. +.|.+
T Consensus 33 ~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~-v~r~~ 97 (103)
T 1ufx_A 33 LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFL-VTEFN 97 (103)
T ss_dssp SCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEE-ECCCC
T ss_pred cEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEE-EEEcc
Confidence 34899999999999999 99999999999999976 89999999874 137778887 55544
No 451
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}
Probab=97.97 E-value=7.6e-05 Score=76.90 Aligned_cols=154 Identities=13% Similarity=0.036 Sum_probs=95.2
Q ss_pred eeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEe-----EEEEEeeCCCcEEEEEECCCCCCccccccee
Q 001280 648 HFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIP-----GEVVFLHPVHNFALIAYDPSSLGVAGASVVR 722 (1108)
Q Consensus 648 ~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~-----a~vv~~dp~~dlAilk~d~~~l~~~~~~~v~ 722 (1108)
+..|+|++|. .....++||++|++..+...+.. ..+ +..++ .+.-..|+..|+||+++.+.- ++.-.++
T Consensus 26 ~h~G~g~~V~-~~G~~~LlTA~Hv~~~~~~~~~~-~k~-g~~ip~~~~~~~~~~~d~~~D~all~vp~~~---~s~lg~~ 99 (191)
T 1zyo_A 26 TTIGFGCRTK-IDGEDCLLTAHHVWCNSMRPTGL-AKA-GKQVSVEDWEISMSSSDKMLDFAIVRVPTHV---WSKLGVK 99 (191)
T ss_dssp EEEEEEEEEE-C--CEEEEECHHHHTSSSCCCEE-EET-TEEEECCSCEEEEEECCTTTCEEEEECCHHH---HHHHTCC
T ss_pred eEEEEEEEEE-ECCCcEEEEChhhCcCCcceeee-cCC-CCEEEcccceeeEccCCCCCcEEEEEcCCCh---hhhcCcc
Confidence 4589999997 33467999996665443232222 333 55444 444456889999999997641 1122355
Q ss_pred ccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccceEEEEeccc-CCCCCceEEcCCee
Q 001280 723 AAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF-GSTFSGVLTDEHGR 801 (1108)
Q Consensus 723 ~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~~I~~d~~i-g~~sGGpL~d~~G~ 801 (1108)
++.|.+ ...++.|.++|++.+..+....+... +. . +-..+++++.- .++||.|++|.+ .
T Consensus 100 ~a~~~~---~~~~~~vt~yg~~~~~~~~s~~g~~~-------~~-----~----~~~~~~~~~~T~~G~SGsP~~ng~-~ 159 (191)
T 1zyo_A 100 STPLVC---PSSKDVITCYGGSSSDCLMSGVGSSS-------TS-----E----FTWKLTHTCPTAAGWSGTPLYSSR-G 159 (191)
T ss_dssp CCCBCC---CCSCEEEEEEEESSTTSEEEEEEEEE-------EC-----S----STTEEEECCCCCTTCTTCEEECSS-C
T ss_pred eeEeec---CCCCccEEEEeecCCCCEeeccccee-------ec-----c----CCcEEEEEcCCCCCCCCCcEEcCC-e
Confidence 667754 34699999999987666554433221 00 0 11345666655 346999999986 7
Q ss_pred EEEEEeeccccccccCCCCCcceeEecccHHHHHHH
Q 001280 802 VQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRV 837 (1108)
Q Consensus 802 VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~v 837 (1108)
||||...+.. ...+++|+-+..++.+
T Consensus 160 IVGvh~G~~~----------~~~~N~a~n~~~~~~~ 185 (191)
T 1zyo_A 160 VVGMHVGFEE----------IGKLNRGVNMFYVANY 185 (191)
T ss_dssp EEEEEEEEEE----------TTTEEEEECHHHHHHH
T ss_pred EEEEEeCccc----------CCceeeeeehHHHhhh
Confidence 7899876422 1345677777777664
No 452
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=97.97 E-value=1.9e-05 Score=73.43 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=46.8
Q ss_pred eEEEEEecCCChhhhc-CCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEE
Q 001280 1008 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRT 1062 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~ 1062 (1108)
+++|..|.++|||+++ ||++||.|++|||+++.+ ++++...+++. +..++|++
T Consensus 36 ~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v 91 (103)
T 2dc2_A 36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ--RGEIEFEV 91 (103)
T ss_dssp EEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC--CSEEEEEE
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCcEEEEE
Confidence 7899999999999995 999999999999999965 89999999974 44788873
No 453
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...
Probab=97.96 E-value=0.00012 Score=79.32 Aligned_cols=185 Identities=14% Similarity=0.168 Sum_probs=104.6
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCC--eEEEEEecC---------CeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP--VVAEAMFVN---------REEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~--~~~~v~~~d---------~~~~~a~vv~~d 114 (1108)
.|-+|+|... ....++|.+|+++ +|||+|||+.... ..+.+.+.. ...+.++-+..|
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h 79 (254)
T 2bz6_H 12 CPWQVLLLVN----------GAQLCGGTLINTI--WVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIP 79 (254)
T ss_dssp STTEEEEEET----------TEEEEEEEECSSS--EEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEEE
T ss_pred cCCEEEEEeC----------CCcEEEEEEecCC--EEEECHHHcCCCCCcceEEEEECCcccCCCCCCcEEEEEEEEEEC
Confidence 3567777631 2467999999965 9999999998532 235665532 345666666777
Q ss_pred CC-------CceEEEEECCCC-cccccccCCCCCCc-----ccCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--
Q 001280 115 PV-------HDFGFFRYDPSA-IQFLNYDEIPLAPE-----AACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD-- 174 (1108)
Q Consensus 115 ~~-------~DlAlLk~d~~~-~~~~~~~~l~l~~~-----~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~-- 174 (1108)
|. +|||||+++..- +. ..+.++.|... .+..|+.+.+.|+..... .......+..+...
T Consensus 80 p~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C 158 (254)
T 2bz6_H 80 STYVPGTTNHDIALLRLHQPVVLT-DHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDC 158 (254)
T ss_dssp TTCCTTSCSSCCEEEEESSCCCCB-TTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHH
T ss_pred CCCCCCCCcCcEEEEEECCccccC-CCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeeeeeeecHHHH
Confidence 65 699999997532 21 12444444432 245789999999753221 12222223222210
Q ss_pred CCCCCC----CCcccccceEEEE-----eeecCCCCCCCceecc-cC--cEEEEeecccCC---CCcccccChHHHHHHH
Q 001280 175 APHYKK----DGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRAL 239 (1108)
Q Consensus 175 ~~~~~~----~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falPi~~i~~~l 239 (1108)
...|.. ....+ .+|=+ ....-.|.|||||+-. +| .++||.+.+..- ...+.+.-+...+..+
T Consensus 159 ~~~~~~~~~~~~~~~---~~~Ca~~~~~~~~~C~GDSGgPl~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI 235 (254)
T 2bz6_H 159 LQQSRKVGDSPNITE---YMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWL 235 (254)
T ss_dssp HHHSCCCTTCCCCCT---TEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHH
T ss_pred hhhhhccccCCccCC---CEEeecCCCCCCccccccCCCceEEeECCEEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHH
Confidence 000110 01111 12222 1234568999999853 45 599999876421 2234456666667777
Q ss_pred HHHHhcC
Q 001280 240 RFLQERR 246 (1108)
Q Consensus 240 ~~l~~~~ 246 (1108)
++..+..
T Consensus 236 ~~~~~~~ 242 (254)
T 2bz6_H 236 QKLMRSE 242 (254)
T ss_dssp HHHHTSC
T ss_pred HHHHhcc
Confidence 6665544
No 454
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=97.96 E-value=7.9e-06 Score=75.90 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=48.8
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeC
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLN 1066 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rd 1066 (1108)
.+++|..|.++|||++ ||++||.|++|||+++.+ +.++...++. .++.++|. +.|+
T Consensus 43 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~ 100 (103)
T 1n7t_A 43 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT--FQNTVELI-IVRE 100 (103)
T ss_dssp CSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHH--CCSEEEEE-EECC
T ss_pred CCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhc--CCCeEEEE-EEec
Confidence 4899999999999999 999999999999999987 6777888774 47889888 6665
No 455
>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}
Probab=97.96 E-value=0.00049 Score=75.41 Aligned_cols=191 Identities=10% Similarity=0.078 Sum_probs=101.6
Q ss_pred hCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEec---------CCeEEeEEEEEE
Q 001280 45 VVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYR 113 (1108)
Q Consensus 45 ~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~---------d~~~~~a~vv~~ 113 (1108)
-.|-+|+|.... ........+.|.+|+++ +|||+|||+... .....+.+. ....+..+-+..
T Consensus 34 ~~Pw~v~l~~~~-----~~~~~~~~CgGsLIs~~--~VLTAAHCv~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~ 106 (276)
T 2vnt_A 34 NQPWFAAIYRRH-----RGGSVTYVCGGSLMSPC--WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLIL 106 (276)
T ss_dssp GSTTEEEEEEEC-----SSSCEEEEEEEEEEETT--EEEECGGGTTTCCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEE
T ss_pred CCCcEEEEEEec-----CCCcceeEEEEEEeeCC--EEEECcccccCCCCCccEEEEeeeeeccCCCCceEEEEEEEEEE
Confidence 358889887642 11222356999999965 999999999743 223344332 234567777777
Q ss_pred cCC---------CceEEEEECCCC---c-ccccccCCCC--CCcccCCCCEEEEEecCCCCC------CeEEEEEEEEec
Q 001280 114 DPV---------HDFGFFRYDPSA---I-QFLNYDEIPL--APEAACVGLEIRVVGNDSGEK------VSILAGTLARLD 172 (1108)
Q Consensus 114 d~~---------~DlAlLk~d~~~---~-~~~~~~~l~l--~~~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~ 172 (1108)
||. .|+|||+++... . ....+.++.| ....+..|..+.+.|+..... .......+..+.
T Consensus 107 Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~l~~~~~~i~~ 186 (276)
T 2vnt_A 107 HKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLIS 186 (276)
T ss_dssp CTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEEC
T ss_pred ccccccccccccchhhhhhhhccccccccCcccccccccccccccccccceEEEEEeeccccCCCCcchhheeeeeeEec
Confidence 764 499999996421 1 1112333333 345667899999988754321 111111121111
Q ss_pred C--CCCCCCCCCcccccceEEEEe-----eecCCCCCCCceec-ccC--cEEEEeecccCCC---CcccccChHHHHHHH
Q 001280 173 R--DAPHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVID-WQG--RAVALNAGSKSSS---ASAFFLPLERVVRAL 239 (1108)
Q Consensus 173 ~--~~~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n-~~G--~vVGi~~~~~~~~---~~~falPi~~i~~~l 239 (1108)
. -...|..... .....+... ...-.|.|||||+- .+| .++||.+.+..-. .-+.+.-+...+..+
T Consensus 187 ~~~C~~~~~~~~~--~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~~~P~vyt~V~~y~~WI 264 (276)
T 2vnt_A 187 HRECQQPHYYGSE--VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 264 (276)
T ss_dssp HHHHTSTTTTGGG--SCTTEEEEECTTSCCCCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHH
T ss_pred HHHhhhhhccCcc--cCccceeeccCCCCCCCCCCCCCCeEEEeeCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHH
Confidence 1 0011111000 011122221 12446999999983 344 4999998765321 123344455555665
Q ss_pred HHHHh
Q 001280 240 RFLQE 244 (1108)
Q Consensus 240 ~~l~~ 244 (1108)
++..+
T Consensus 265 ~~~~~ 269 (276)
T 2vnt_A 265 RSHTK 269 (276)
T ss_dssp HHHHS
T ss_pred HHHhh
Confidence 55443
No 456
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=97.96 E-value=2.4e-05 Score=75.41 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=47.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIER 353 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R 353 (1108)
..+++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++... ++++.|+|.|
T Consensus 44 ~~~~~V-~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r 103 (125)
T 3hpk_A 44 CPCLYI-VQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNK 103 (125)
T ss_dssp CSSEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEE
T ss_pred CCCEEE-EEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 356666 79999999999 9 9999999999999998 567777777664 4569999988
No 457
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=97.95 E-value=3.5e-05 Score=86.71 Aligned_cols=163 Identities=10% Similarity=0.039 Sum_probs=91.7
Q ss_pred hCCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEec------CCeEEeEEEEEEcCC--
Q 001280 45 VVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV------NREEIPVYPIYRDPV-- 116 (1108)
Q Consensus 45 ~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~------d~~~~~a~vv~~d~~-- 116 (1108)
-.|-+|.|... .....++|.+|+++ +|||+||++.. ...+.|++. ..+.+.++-+..||.
T Consensus 104 ~~Pw~v~l~~~---------~~~~~CgGtLIs~~--~VLTAAHC~~~-~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~y~ 171 (317)
T 3h5c_B 104 DLPWQVKLTNS---------EGKDFCGGVIIREN--FVLTTAKCSLL-HRNITVKTYFNRTSQDPLMIKITHVHVHMRYD 171 (317)
T ss_dssp CCTTEEEEECS---------SSCEEEEEEEEETT--EEEECHHHHHS-CSSCEEEECTTSCTTSCEEEEEEEEEECTTCB
T ss_pred CCCcEEEEecc---------CCceeeeeEEeeCC--EEEEChHhcCc-CCceEEEEeeecCCCCcEEEEeeEEEECCCCC
Confidence 35778888642 13457999999965 99999999863 334555553 345677777777774
Q ss_pred -----CceEEEEECCCCcccccccCCCCCCc-----ccCCCCEEEEEecCCCCC---CeEEEEEEEEecCC--CCCCCCC
Q 001280 117 -----HDFGFFRYDPSAIQFLNYDEIPLAPE-----AACVGLEIRVVGNDSGEK---VSILAGTLARLDRD--APHYKKD 181 (1108)
Q Consensus 117 -----~DlAlLk~d~~~~~~~~~~~l~l~~~-----~~~~G~~V~~iG~p~g~~---~si~~G~is~~~~~--~~~~~~~ 181 (1108)
+||||||++..-.-...+.++.|... .+..|+.+++.|+..... .......+..+... ...|+.
T Consensus 172 ~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~v~~~~~~~C~~~~~~- 250 (317)
T 3h5c_B 172 ADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEECGQVLNV- 250 (317)
T ss_dssp TTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCTTCCSSSCCCBCCEEEEECHHHHHHHHTC-
T ss_pred CCCCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCCCCCCCCccceEEEEEEECHHHHhhhhcC-
Confidence 59999999753211113445555433 367899999999854111 01111111112110 000110
Q ss_pred CcccccceEEEEeeecCCCCCCCceecc-cCc--EEEEeeccc
Q 001280 182 GYNDFNTFYMQAASGTKGGSSGSPVIDW-QGR--AVALNAGSK 221 (1108)
Q Consensus 182 ~~~~~~~~~i~~~a~~~~G~SGgPv~n~-~G~--vVGi~~~~~ 221 (1108)
...+ +............|.|||||+-. +|+ ++||.+.+.
T Consensus 251 ~~~~-~~~Ca~~~~~~~~gDsGgPl~~~~~~~~~l~Gi~S~g~ 292 (317)
T 3h5c_B 251 TVTT-RTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLGSQP 292 (317)
T ss_dssp CCCT-TEEEEECSCCCCCCCTTCEEEEEETTEEEEEEEECCCC
T ss_pred cCCC-ceeECCCCCCCcCCCCCCCEEEecCCEEEEEEEEEECC
Confidence 0111 00111112223468999999853 455 999997643
No 458
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.95 E-value=1.3e-05 Score=93.96 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=65.6
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe----------EEEEEEE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK----------PRVLTLK 1075 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~----------~~~~~lk 1075 (1108)
|++|.+|.+||||+++||++||.|++|||+++.+ .+++...++..+.|+.++|+ +.|+|+ ...+-++
T Consensus 24 Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~-V~r~g~~~~~~~~~~~g~s~yVr 102 (468)
T 3shw_A 24 GIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-AQKKKDVYRRIVESDVGDSFYIR 102 (468)
T ss_dssp EEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEE-EEECHHHHHHHHHHTCCCCEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE-EEECCccchhhhccccccccccc
Confidence 8999999999999999999999999999999988 89999999997779999999 788654 1234567
Q ss_pred eCCccCcce
Q 001280 1076 QDLHYWPTW 1084 (1108)
Q Consensus 1076 ~d~~y~pt~ 1084 (1108)
..++|-|.-
T Consensus 103 alfdy~~~~ 111 (468)
T 3shw_A 103 THFEYEKES 111 (468)
T ss_dssp ECSCBCCSS
T ss_pred cccCcCCCC
Confidence 778887763
No 459
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=8.2e-06 Score=75.40 Aligned_cols=58 Identities=26% Similarity=0.397 Sum_probs=47.0
Q ss_pred CceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCCh-hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQF-LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~~-~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.+++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.. .++.+.|+|.|+++
T Consensus 35 ~~v~V-~~V~~~spA~~agGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 95 (100)
T 2edp_A 35 EPLTV-SKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKG-SFRILKLIVRRRNS 95 (100)
T ss_dssp EEEEE-CCCCTTSHHHHHTSCCTTCEEEEETTEECCSCSHHHHHHHHT-CCSSCEEEEEECCC
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCCEEEEECCEEccchHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 45555 79999999998 7999999999999999985 334444443 47889999999875
No 460
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.95 E-value=6.8e-06 Score=79.20 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=47.6
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhH--HHHHHhcCCCCeEEEEEEECCEE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLK--LETLLDDGVDKNIELLIERGGIS 357 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~--l~~~l~~~~g~~v~l~V~R~g~~ 357 (1108)
.|++| ..|.++|||++ | |++||+|++|||+.+.++.+ +..++.. .++.+.|+|.|+++.
T Consensus 51 ~gv~V-~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~ 113 (124)
T 2daz_A 51 MSIFV-VGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT-APSKVKLVFIRNEDA 113 (124)
T ss_dssp CCEEE-EEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHH-SCSEEEEEEEECTTH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence 57776 79999999999 9 99999999999999977444 4344433 467999999998763
No 461
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=97.95 E-value=1e-05 Score=75.37 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=46.2
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLI 351 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V 351 (1108)
..|++| ..|.+++||++ ||++||+|++|||+.+. ++.++..++.... ..+.|+|
T Consensus 47 ~~~~~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v 103 (104)
T 2z17_A 47 EMFTLI-CKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG-NLLTIET 103 (104)
T ss_dssp SCCEEE-EEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHTT-TEEEEEC
T ss_pred CCCeEE-EEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CcEEEEE
Confidence 457766 79999999999 99999999999999999 8899998887664 4777765
No 462
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=97.94 E-value=2e-05 Score=74.13 Aligned_cols=59 Identities=25% Similarity=0.215 Sum_probs=52.6
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
|.+|.++.+ ||+.+||++||.|++|||+++.++ +++++.+++.+.++.++|. +.|+|.+
T Consensus 35 g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~-V~R~g~~ 95 (113)
T 3soe_A 35 GQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL-ILRGGPP 95 (113)
T ss_dssp EEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEE-EEESSCC
T ss_pred CcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE-EEECCcc
Confidence 667888887 688999999999999999999955 7999999998889999999 8898864
No 463
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=97.94 E-value=3e-05 Score=89.77 Aligned_cols=66 Identities=29% Similarity=0.550 Sum_probs=57.0
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE---EEEEEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI---SMTVNL 362 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~---~~~~~v 362 (1108)
..+++| ..|.++|||++ ||++||+|++|||+++.++ .++..++....|++++|+|.|+|+ .+++++
T Consensus 98 ~~~~~V-~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l 169 (388)
T 1fc6_A 98 GKDVVV-LTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQL 169 (388)
T ss_dssp SSCEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEE
T ss_pred CCcEEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEE
Confidence 356666 69999999999 9999999999999999997 677777777789999999999998 666666
No 464
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.94 E-value=6.2e-06 Score=78.56 Aligned_cols=59 Identities=31% Similarity=0.469 Sum_probs=48.0
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHH--HHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKL--ETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l--~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||+.||++||+|++|||+.+.++.+. ..++.. .++.+.|+|.|.++
T Consensus 45 ~~gv~V-~~V~~~spA~~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 105 (117)
T 2csj_A 45 ETSIVI-SDVLPGGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRK-SGKIAAIVVKRPRK 105 (117)
T ss_dssp CCBCEE-EEECTTSSHHHHBCTTCEEEEESSCBCBTCCHHHHHHHHHH-SCSEEEEEEEEEEE
T ss_pred CCCEEE-EEECCCCcccccCCCCCEEEEECCEECCCcCHHHHHHHHhc-CCCeEEEEEEECCc
Confidence 467777 699999999669999999999999999886444 344444 58899999999655
No 465
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*
Probab=97.93 E-value=0.00021 Score=76.50 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=58.6
Q ss_pred ccEEEEEEEeCCCcEEEEcccccCC---CCeEEEEEecC-------CeEEeEEEEEEcC--------CCceEEEEECCCC
Q 001280 67 ASYATGFVVDKRRGIILTNRHVVKP---GPVVAEAMFVN-------REEIPVYPIYRDP--------VHDFGFFRYDPSA 128 (1108)
Q Consensus 67 ~~~GSGfvV~~~~G~ILTn~HVV~~---~~~~~~v~~~d-------~~~~~a~vv~~d~--------~~DlAlLk~d~~~ 128 (1108)
...++|.+|+++ +|||+|||+.. ....+.+.+.. ...+..+-+..|| .+||||||++..-
T Consensus 21 ~~~CgGtLI~~~--~VLTAAhC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v 98 (242)
T 3tvj_B 21 GTTAAGALLYDN--WVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKV 98 (242)
T ss_dssp SEEEEEEEETTT--EEEECHHHHSTTTTCSSCCEEEESCSBTTCSCCEEEEEEEEEECTTCCTTSCSTTCCEEEEESSCC
T ss_pred CCcEEEEEecCC--EEEECHHHCCCCCCCcceEEEEeccccccCcccceeeEEEEEeCCCCCCCCCCcCcEEEEEECCcc
Confidence 357999999965 99999999963 23345555542 2455566666665 3699999997432
Q ss_pred cccccccCCCCCCc----ccCCCCEEEEEecCCC
Q 001280 129 IQFLNYDEIPLAPE----AACVGLEIRVVGNDSG 158 (1108)
Q Consensus 129 ~~~~~~~~l~l~~~----~~~~G~~V~~iG~p~g 158 (1108)
.-...+.++.|... .+..|+.+.+.|+...
T Consensus 99 ~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~ 132 (242)
T 3tvj_B 99 VINSNITPICLPRKEAESFMRTDDIGTASGWGLT 132 (242)
T ss_dssp CCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCC
T ss_pred ccCCCEecCCcCCCcccccccCCCEEEEEEeCCC
Confidence 11113344444322 3678999999998643
No 466
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}
Probab=97.93 E-value=0.0003 Score=77.35 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=91.3
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC-----CeEEEEEecC------------------
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-----PVVAEAMFVN------------------ 102 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~-----~~~~~v~~~d------------------ 102 (1108)
.|-+|.|.... ........++|.+|+++ +|||+|||+... .....|.+..
T Consensus 34 ~Pw~v~l~~~~-----~~~~~~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~~~ 106 (278)
T 2olg_A 34 FPWTAMIGYKN-----SSNFEQFACGGSLINNR--YIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVP 106 (278)
T ss_dssp STTEEEEEEEC-----TTCCEEEEEEEEECSSS--EEEECGGGTSTHHHHHTCEEEEEEESCSBTTCSSCEETTTTEECS
T ss_pred CCceEEEEEec-----CCCCcceeEEEEEEeCC--EEEEhHHhCCCcccccccceeEEEeCcccCCCCccccccccccCC
Confidence 46788887642 11112457999999965 999999999742 1234555431
Q ss_pred --CeEEeEEEEEEcC---------CCceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC----CeEE
Q 001280 103 --REEIPVYPIYRDP---------VHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSIL 164 (1108)
Q Consensus 103 --~~~~~a~vv~~d~---------~~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~ 164 (1108)
...+..+-+..|| .+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... ....
T Consensus 107 ~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~-~~v~picLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~l~ 185 (278)
T 2olg_A 107 DKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFT-NYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQYSTIKQ 185 (278)
T ss_dssp SCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEESCCSSSCCCCSBCE
T ss_pred CCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCC-CCcCccCcCCCCCCcCCCCEEEEEcCCcCCCCCccchhh
Confidence 2345566566665 3699999997532 11 123444443 33567899999999864322 1112
Q ss_pred EEEEEEecCC--CCCCCCCCcccccceEEEEe----eecCCCCCCCceecc--cC--cEEEEeeccc
Q 001280 165 AGTLARLDRD--APHYKKDGYNDFNTFYMQAA----SGTKGGSSGSPVIDW--QG--RAVALNAGSK 221 (1108)
Q Consensus 165 ~G~is~~~~~--~~~~~~~~~~~~~~~~i~~~----a~~~~G~SGgPv~n~--~G--~vVGi~~~~~ 221 (1108)
...+..+... ...|..... .....+|=+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 186 ~~~~~i~~~~~C~~~~~~~~~-~~~~~~~Ca~~~~~~~~C~GDSGGPL~~~~~~~~~~l~GIvS~g~ 251 (278)
T 2olg_A 186 KLAVPVVHAEQCAKTFGAAGV-RVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLEGLVSFGA 251 (278)
T ss_dssp EEEEEBCCGGGGGGGGSSTTC-CCCTTEEEECCTTCTTCCCCCTTCEEEEEEGGGEEEEEEEEEECC
T ss_pred cccccccCHHHHHHHhccccc-cCCCceEeeecCCCCeeCCCccCcceEEEcCCCcEEEEEEEEECC
Confidence 2122222111 001111000 0001122221 134579999999843 34 6999998764
No 467
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.93 E-value=3.4e-06 Score=79.59 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=50.1
Q ss_pred CCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 295 GETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
...|++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++.. .++.+.|+|.|+..
T Consensus 42 ~~~gv~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 105 (111)
T 1uju_A 42 TDEGIFI-SKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTVLVCDGFE 105 (111)
T ss_dssp TCCCCEE-EEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEECCCCCCC
T ss_pred CCCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence 3567777 69999999999 9 9999999999999999 56666666644 68899999988653
No 468
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.92 E-value=1.3e-05 Score=92.68 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=64.3
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCC--HHHHHHHHHcCCCCceEEEEEEEeCCe----------EEEEEE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK----------PRVLTL 1074 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~v~~~~~~~~v~l~~v~rdg~----------~~~~~l 1074 (1108)
.|++|.+|.+||||+++||++||.|++|||+++.+ ++++...++..+.|+.++|. +.|+++ ...+-+
T Consensus 31 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~-v~r~~~~~~~~~~~~~~~~~~v 109 (391)
T 3tsz_A 31 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-AQKKKDVYRRIVESDVGDSFYI 109 (391)
T ss_dssp TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEE-EEECHHHHGGGTSSCCSCCEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEE-EeeCCccccccccccccccccc
Confidence 38999999999999999999999999999999977 89999999986669999999 777752 123456
Q ss_pred EeCCccCcc
Q 001280 1075 KQDLHYWPT 1083 (1108)
Q Consensus 1075 k~d~~y~pt 1083 (1108)
+..+.|-|.
T Consensus 110 ral~dy~~~ 118 (391)
T 3tsz_A 110 RTHFEYEKE 118 (391)
T ss_dssp EECSCBCCS
T ss_pred ccccccCCC
Confidence 677777665
No 469
>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Probab=97.92 E-value=0.00022 Score=82.08 Aligned_cols=169 Identities=11% Similarity=0.074 Sum_probs=93.6
Q ss_pred ccEEEEEEEeCCCcEEEEcccccCC---CCeEEEEEec-------CCeEEeEEEEEEcCCC-------------ceEEEE
Q 001280 67 ASYATGFVVDKRRGIILTNRHVVKP---GPVVAEAMFV-------NREEIPVYPIYRDPVH-------------DFGFFR 123 (1108)
Q Consensus 67 ~~~GSGfvV~~~~G~ILTn~HVV~~---~~~~~~v~~~-------d~~~~~a~vv~~d~~~-------------DlAlLk 123 (1108)
...+.|.+|+++ +|||+||++.. ....+.|.+. .+..+.++-+..||.+ ||||||
T Consensus 140 ~~~CgGsLIs~~--~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlk 217 (372)
T 1z8g_A 140 AHLCGGSLLSGD--WVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVH 217 (372)
T ss_dssp EEEEEEEESSSS--EEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEE
T ss_pred ceEEEEEEecCC--EEEEChhhcCCCCCccceEEEEEeeEeccCCCCcEEEEEEEEECCCccccccCCCCCCCccEEEEE
Confidence 467899999965 99999999942 1234555543 2345666666666654 999999
Q ss_pred ECCCC-cccccccCCCCC--CcccCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CC-CCCCCCCcccccceEE
Q 001280 124 YDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DA-PHYKKDGYNDFNTFYM 191 (1108)
Q Consensus 124 ~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~---~~-~~~~~~~~~~~~~~~i 191 (1108)
++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+.. .. ..|+. ...+ .+|
T Consensus 218 L~~pv~~~-~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~~L~~~~v~ii~~~~C~~~~~~~~-~i~~---~~i 292 (372)
T 1z8g_A 218 LSSPLPLT-EYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGN-QIKP---KMF 292 (372)
T ss_dssp ESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHTSTTTTTT-CCCT---TEE
T ss_pred ECCCCCCC-CceeccccCCcccCCCCCCEEEEEecCCCCCCCCCCceeeEEEEEecChHHhCcchhcCC-cCCC---CeE
Confidence 97532 21 123444443 34567899999999864321 1122222322221 11 11211 1111 122
Q ss_pred EEe-----eecCCCCCCCceeccc-----C--cEEEEeecccCC---CCcccccChHHHHHHHHHH
Q 001280 192 QAA-----SGTKGGSSGSPVIDWQ-----G--RAVALNAGSKSS---SASAFFLPLERVVRALRFL 242 (1108)
Q Consensus 192 ~~~-----a~~~~G~SGgPv~n~~-----G--~vVGi~~~~~~~---~~~~falPi~~i~~~l~~l 242 (1108)
=+. ...-.|.|||||+-.+ | .++||.+.+..= ..-+.+.-+...+..+++.
T Consensus 293 Cag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~p~vyt~V~~y~~WI~~~ 358 (372)
T 1z8g_A 293 CAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQA 358 (372)
T ss_dssp EESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred eeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence 221 2345799999998433 3 699999876421 2234445555555555443
No 470
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.89 E-value=1.3e-05 Score=76.39 Aligned_cols=59 Identities=15% Similarity=0.312 Sum_probs=47.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+.. ++..++. ..|+.+.|+|.|.+.
T Consensus 49 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 49 LKGIFI-KQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIK-NAGNPVVFIVQSLSS 111 (117)
T ss_dssp CCSEEE-EEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHH-TSCSSEEEEECCBSC
T ss_pred cCCEEE-EEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence 467777 79999999999 9 9999999999999998754 4444444 358899999988544
No 471
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=97.89 E-value=1.4e-05 Score=70.91 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=42.7
Q ss_pred EEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEE
Q 001280 303 DSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIER 353 (1108)
Q Consensus 303 ~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R 353 (1108)
..+.+++||++ ||++||+|++|||+.+... .++..+|. ..|.+|+|+|..
T Consensus 28 ~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 28 TSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp EEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred EEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 59999999999 9999999999999999765 45556666 678899998864
No 472
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=9.5e-06 Score=75.74 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=48.0
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.. .++.+.++|.|.+.
T Consensus 31 ~~g~~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~ 92 (106)
T 2eei_A 31 KKGVYM-TDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKET 92 (106)
T ss_dssp CCSCEE-CCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTTT
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCch
Confidence 467777 79999999999 9999999999999999865 455444443 47789999998765
No 473
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Probab=97.88 E-value=0.00024 Score=77.01 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=61.8
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCC-------CCeEEEEEecC----------CeEEeE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKP-------GPVVAEAMFVN----------REEIPV 108 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~-------~~~~~~v~~~d----------~~~~~a 108 (1108)
.|-+|.|.... .....++|.+|+++ +|||+|||+.. ....+.+.+.. ......
T Consensus 12 ~Pw~v~l~~~~--------~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v 81 (259)
T 3rm2_H 12 SPWQVMLFRKS--------PQELLCGASLISDR--WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISML 81 (259)
T ss_dssp STTEEEEEEET--------TEEEEEEEEECSSS--EEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEE
T ss_pred cCCEEEEEECC--------CCceEEEEEEEeCC--EEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeEE
Confidence 46677775421 12357999999964 99999999841 12334555432 122335
Q ss_pred EEEEEcCC--------CceEEEEECCCC-cccccccCCCCCCc-----ccCCCCEEEEEecCC
Q 001280 109 YPIYRDPV--------HDFGFFRYDPSA-IQFLNYDEIPLAPE-----AACVGLEIRVVGNDS 157 (1108)
Q Consensus 109 ~vv~~d~~--------~DlAlLk~d~~~-~~~~~~~~l~l~~~-----~~~~G~~V~~iG~p~ 157 (1108)
+-+..||. +|||||+++..- +. ..+.++.|... .+..|..+.+.|+..
T Consensus 82 ~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~g~~~~v~GwG~ 143 (259)
T 3rm2_H 82 EKIYIHPRYNWRENLDRDIALMKLKKPVAFS-DYIHPVCLPDRETAASLLQAGYKGRVTGWGN 143 (259)
T ss_dssp EEEEECTTCBTTTTCBTCCEEEEESSCCCCB-TTBCCCBCCCHHHHHHHCCTTCEEEEEESCC
T ss_pred EEEEECCCCCCCCCCCCcEEEEEeCCceEcC-CCcccccCCCccccccccCCCCEEEEeecCC
Confidence 55566653 499999997532 21 12344444332 236799999999864
No 474
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Probab=97.88 E-value=6.1e-05 Score=80.67 Aligned_cols=177 Identities=18% Similarity=0.177 Sum_probs=95.8
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCCCeEEEEEecC---------CeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~~~~~~v~~~d---------~~~~~a~vv~~d~~ 116 (1108)
.|-+|.|... ....++|.+|+++ +|||+|||+... ..+.+.+.. ...+...-+..||.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAhC~~~~-~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 78 (235)
T 2wph_S 12 FPWQVVLNGK----------VDAFCGGSIVNEK--WIVTAAHCVETG-VKITVVAGEHNIEETEHTEQKRNVIRIIPHHN 78 (235)
T ss_dssp STTEEEEESS----------STTCEEEEEEETT--EEEECGGGCCTT-SCCEEEESCCBTTSCCSCCEEEEEEEEEECTT
T ss_pred CCeEEEEccC----------CCeeEEEEEEeCC--EEEECHHHCcCC-CCEEEEEcccccCCCCCCcEEeeeEEEEeCCC
Confidence 3556777532 1457999999965 999999999843 345555431 24455665666653
Q ss_pred ---------CceEEEEECCCC-cccccccCCCCCCcc----cCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--C
Q 001280 117 ---------HDFGFFRYDPSA-IQFLNYDEIPLAPEA----ACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--A 175 (1108)
Q Consensus 117 ---------~DlAlLk~d~~~-~~~~~~~~l~l~~~~----~~~G~~V~~iG~p~g~~-----~si~~G~is~~~~~--~ 175 (1108)
+||||||++..- +. ..+.++.|.... +..+...++.|+..... .......+.-+... .
T Consensus 79 y~~~~~~~~~DIALl~L~~~~~~~-~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~ 157 (235)
T 2wph_S 79 FNAAINTYNHDIALLELDEPLVLN-SYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCL 157 (235)
T ss_dssp TTSSSSCCTTCCEEEEESSCCCCB-TTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHH
T ss_pred CcccCCcCCCCEEEEEECCcCcCC-CCccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEeeeeeeCHHHhc
Confidence 599999997532 21 134455554322 24688899999753211 11222222222210 0
Q ss_pred CCCCCCCcccccceEEEE-----eeecCCCCCCCceecc-cC--cEEEEeecccCC---CCcccccChHHHHHHHH
Q 001280 176 PHYKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRALR 240 (1108)
Q Consensus 176 ~~~~~~~~~~~~~~~i~~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falPi~~i~~~l~ 240 (1108)
..+.. ...+ .+|=+ ....-.|.|||||+-. +| .++||.+.+..- ...+.+..+...+..++
T Consensus 158 ~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~ 229 (235)
T 2wph_S 158 RSTKF-TITN---NMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIK 229 (235)
T ss_dssp HTCSS-CCCT---TEEEESCTTCSCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHH
T ss_pred CcccC-CCCC---CEEEeCCCCCCCccCCCCCCCceEEeECCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHH
Confidence 00110 1111 11222 1234579999999853 45 599999876421 12233444444444443
No 475
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=97.88 E-value=2.1e-05 Score=79.97 Aligned_cols=57 Identities=26% Similarity=0.490 Sum_probs=47.4
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001280 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 354 (1108)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .|..|.|+|.|+
T Consensus 110 ~~gi~V-~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R~ 170 (170)
T 3egg_C 110 KLGIFV-KTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGRE 170 (170)
T ss_dssp SBEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 356666 79999999999 9 99999999999999954 5556666655 678999999985
No 476
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.88 E-value=1.7e-05 Score=74.17 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=47.4
Q ss_pred CCceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..|++| ..|.++|||++ ||++||+|++|||+.+.+.. ++..++.. .++.+.|+|.|.+.
T Consensus 40 ~~gv~V-~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 102 (107)
T 1uhp_A 40 SEGIFV-SKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQVLRRTS 102 (107)
T ss_dssp SCCCEE-EEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEEEEECCS
T ss_pred CCCEEE-EEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEEEEeCCC
Confidence 467777 79999999998 79999999999999997754 44444443 57899999999753
No 477
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.87 E-value=5.6e-06 Score=78.88 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=50.3
Q ss_pred CeEEEEEecCCChhhhcCCCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCCeE
Q 001280 1007 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKP 1069 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg~~ 1069 (1108)
.+++|..|.++|||+ +||++||.|++|||+++.++ +++...++. .++.++|. +.|.+..
T Consensus 46 ~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~~ 106 (117)
T 2csj_A 46 TSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK--SGKIAAIV-VKRPRKV 106 (117)
T ss_dssp CBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH--SCSEEEEE-EEEEEEC
T ss_pred CCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhc--CCCeEEEE-EEECCcc
Confidence 478999999999997 99999999999999999875 777788886 37889998 6665543
No 478
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=97.87 E-value=3.4e-05 Score=69.94 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=52.1
Q ss_pred eEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEE
Q 001280 1008 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVH 1064 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~ 1064 (1108)
.+||.++.+||||++.| |.+||.|++|||+.+..+ ++.++++++.+.+..++|+++.
T Consensus 29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~ 88 (95)
T 3gge_A 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE 88 (95)
T ss_dssp CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence 36899999999999987 799999999999999776 8999999999999999999754
No 479
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=97.86 E-value=1.2e-06 Score=92.84 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=61.7
Q ss_pred eEEEEEecCCChhhhcCCCCCCEEEEECCeecC--CHHHHHHHHHcCCCCceE-EEEEEEeCCeEE--EEEEEeCCccCc
Q 001280 1008 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFV-RVRTVHLNGKPR--VLTLKQDLHYWP 1082 (1108)
Q Consensus 1008 gV~V~~v~~gSpA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~v~~~~~~~~v-~l~~v~rdg~~~--~~~lk~d~~y~p 1082 (1108)
|++|..|.+||||+++||++||.|++|||+++. +++++.++++.. ++.+ .|. +.|+|+.+ .+++++.....+
T Consensus 34 gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~--g~~v~~l~-V~R~g~~~~~~v~v~p~~~~~~ 110 (216)
T 2krg_A 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG--GDETKLLV-VDRETDEFFKKCRVIPSQEHLN 110 (216)
T ss_dssp SCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH--CSEEEEEE-CCHHHHHHHHHHTCCCCGGGGS
T ss_pred CeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc--CCeEEEEE-EEECCEEEEEEEEEEEeeeecC
Confidence 789999999999999999999999999999999 999999999875 7778 776 78999876 556666544433
Q ss_pred c
Q 001280 1083 T 1083 (1108)
Q Consensus 1083 t 1083 (1108)
.
T Consensus 111 ~ 111 (216)
T 2krg_A 111 G 111 (216)
T ss_dssp S
T ss_pred C
Confidence 3
No 480
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=1.3e-05 Score=75.85 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=46.0
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECC
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGG 355 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 355 (1108)
.|++| ..|.++|||++ ||++||+|++|||++|.+ |.++..++.. ..+.|+|.|..
T Consensus 44 ~gv~V-~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 44 RRLYV-NSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp EEEEE-EECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred CCEEE-EEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 45555 79999999999 999999999999999998 4677777753 38999998854
No 481
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=97.86 E-value=1.4e-05 Score=74.67 Aligned_cols=57 Identities=28% Similarity=0.497 Sum_probs=45.0
Q ss_pred CceEEEEEecCCCcccc-C--CCCCCEEEEECCEEeCChhH--HHHHHhcCC---CCeEEEEEEEC
Q 001280 297 TGLLVVDSVVPGGPAHL-R--LEPGDVLVRVNGEVITQFLK--LETLLDDGV---DKNIELLIERG 354 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g--L~~GD~Il~VnG~~v~~~~~--l~~~l~~~~---g~~v~l~V~R~ 354 (1108)
.+++| ..|.++|||++ | |++||+|++|||+.+.++.+ +..++.... +..|.|+|.|+
T Consensus 43 ~~~~V-~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 43 MPVIV-SRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp EEEEE-EEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred CCeEE-EEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence 45665 79999999999 9 99999999999999997754 444444332 35899999884
No 482
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Probab=97.86 E-value=0.00038 Score=74.94 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=66.1
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC---CeEEEEEecC------CeEEeEEEEEEcCC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG---PVVAEAMFVN------REEIPVYPIYRDPV 116 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~---~~~~~v~~~d------~~~~~a~vv~~d~~ 116 (1108)
.|-+|+|.... ......++|.+|+++ +|||+|||+... ...+.+.+.. ++.+.++-+..||.
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~v~~i~~Hp~ 82 (245)
T 2f9n_A 12 WPWQVSLRVRD-------RYWMHFCGGSLIHPQ--WVLTAAHCVGPDVKDLATLRVQLREQHLYYQDQLLPVSRIIVHPQ 82 (245)
T ss_dssp CTTEEEEEEES-------SSEEEEEEEEEEETT--EEEECGGGGCSSCCCGGGEEEECSCSBTTTTCCCBCEEEEEECTT
T ss_pred CCcEEEEEEcC-------CCcceEEEEEEeeCC--EEEECHHhCCCCCCCcceEEEEeCCcccccCceEEEEEEEEECCC
Confidence 46678887631 112457999999965 999999999632 3345665542 34556666777765
Q ss_pred -------CceEEEEECCCC-cccccccCCCCC--CcccCCCCEEEEEecCC
Q 001280 117 -------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDS 157 (1108)
Q Consensus 117 -------~DlAlLk~d~~~-~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~ 157 (1108)
+||||||++..- +. ..+.++.|. ...+..|+.+++.|+..
T Consensus 83 y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~ 132 (245)
T 2f9n_A 83 FYIIQTGADIALLELEEPVNIS-SRVHTVMLPPASETFPPGMPCWVTGWGD 132 (245)
T ss_dssp CCSSCCTTCCEEEEESSCCCCC-SSSCCCBCCCTTCCCCTTCCEEEEESCC
T ss_pred ccCCCCCCcEEEEEeCCCCcCC-CCccccCCCCcccCCCCCCEEEEEEeCC
Confidence 599999997532 21 123343343 34566899999999864
No 483
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*
Probab=97.85 E-value=0.00051 Score=76.14 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=90.6
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEecC--------------CeEEeEE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN--------------REEIPVY 109 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~d--------------~~~~~a~ 109 (1108)
.|-+|.|..... . .......|.|.+|+++ +|||+|||+... ...+.+.+.. .+.+.++
T Consensus 12 ~Pw~v~l~~~~~---~-~~~~~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~V~ 85 (290)
T 1fiw_A 12 WPWMVSLQIFTY---H-NNRRYHVCGGSLLNSQ--WLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVE 85 (290)
T ss_dssp STTEEEEEEEET---T-TTEEEEEEEEEEEETT--EEEECGGGGSSCCSGGGEEEEESCSBCCTTCCSCCCTTCEEEEEE
T ss_pred CCcEEEEEEecc---C-CCccceEEEEEEeeCC--EEEECHHhCCCCCCCcceEEEecceEEeccCCCcCCCCceEEEEE
Confidence 366788765320 0 1112356999999965 999999999743 2234555421 2455566
Q ss_pred EEEEcCC-------CceEEEEECCC-CcccccccCCCCCC---cccCCCCEEEEEecCCCCC------CeEEEEEEEEec
Q 001280 110 PIYRDPV-------HDFGFFRYDPS-AIQFLNYDEIPLAP---EAACVGLEIRVVGNDSGEK------VSILAGTLARLD 172 (1108)
Q Consensus 110 vv~~d~~-------~DlAlLk~d~~-~~~~~~~~~l~l~~---~~~~~G~~V~~iG~p~g~~------~si~~G~is~~~ 172 (1108)
-+..||. +||||||++.. .+. ..+.++.|.. .....|+.+.+.|+..... .......+..+.
T Consensus 86 ~i~~Hp~y~~~~~~nDIALl~L~~~v~~~-~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~ 164 (290)
T 1fiw_A 86 KIIIHEKYSASSEANDIALMKITPPVTCG-HFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLID 164 (290)
T ss_dssp EEEECTTCBTTTTBTCCEEEEEESCCCCB-TTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEEEEEEEEC
T ss_pred EEEECCCCCCCCCCCCEEEEEECCccccC-CccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeEEEEEEec
Confidence 6667765 69999999753 221 1233433332 2245699999999864221 112222333332
Q ss_pred C---CC-CCCCCCCcccccceEEEEe-----eecCCCCCCCceeccc---C--cEEEEeeccc
Q 001280 173 R---DA-PHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQ---G--RAVALNAGSK 221 (1108)
Q Consensus 173 ~---~~-~~~~~~~~~~~~~~~i~~~-----a~~~~G~SGgPv~n~~---G--~vVGi~~~~~ 221 (1108)
. .. ..|.. ...+ .+|=+. ...-.|.|||||+-.+ | .++||.+.+.
T Consensus 165 ~~~C~~~~~~~~-~i~~---~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~ 223 (290)
T 1fiw_A 165 LGLCNSTRWYNG-RIRS---TNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGV 223 (290)
T ss_dssp HHHHTSTTTTTT-CCCT---TEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECS
T ss_pred HHHhccccccCC-cCCC---CEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECC
Confidence 1 11 01111 1111 122221 2345699999998432 3 6999998764
No 484
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2
Probab=97.84 E-value=7.7e-05 Score=80.21 Aligned_cols=171 Identities=16% Similarity=0.147 Sum_probs=89.5
Q ss_pred cEEEEEEEeCCCcEEEEcccccCCC------CeEEEEEecCC--------eEEeEEEEEEcCC----------CceEEEE
Q 001280 68 SYATGFVVDKRRGIILTNRHVVKPG------PVVAEAMFVNR--------EEIPVYPIYRDPV----------HDFGFFR 123 (1108)
Q Consensus 68 ~~GSGfvV~~~~G~ILTn~HVV~~~------~~~~~v~~~d~--------~~~~a~vv~~d~~----------~DlAlLk 123 (1108)
..++|.+|+++ +|||+|||+... ...+.|.+... ..+.++-+..||. +||||||
T Consensus 22 ~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~ 99 (242)
T 2qy0_B 22 GRGGGALLGDR--WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLE 99 (242)
T ss_dssp SEEEEEEETTT--EEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHHCCCCEEEEEECTTCCTTCSSCCTTCCEEEE
T ss_pred CCEEEEEEeCC--EEEEcHHhccccccccCCCceEEEEEeeccccccccccceeEEEEEECCCCccCcCCCCCCcEEEEE
Confidence 46899999965 999999999732 22345555422 2345565666654 4999999
Q ss_pred ECCCC-cccccccCCCCCC--cccCCCCEEEEEecCCCCC---CeEEEEEEEEecCC--CCCCCCCCc-ccccceEEEE-
Q 001280 124 YDPSA-IQFLNYDEIPLAP--EAACVGLEIRVVGNDSGEK---VSILAGTLARLDRD--APHYKKDGY-NDFNTFYMQA- 193 (1108)
Q Consensus 124 ~d~~~-~~~~~~~~l~l~~--~~~~~G~~V~~iG~p~g~~---~si~~G~is~~~~~--~~~~~~~~~-~~~~~~~i~~- 193 (1108)
++..- +. ..+.++.|.. ..+..|..+++.|+..... .......+..+... ...|..... ......+|=+
T Consensus 100 L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~ 178 (242)
T 2qy0_B 100 LENSVTLG-PNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 178 (242)
T ss_dssp ESSCCCCB-TTBCCCBCCCSGGGGCTTCEEEEEECCCCSSSCCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEES
T ss_pred ECCCCcCC-CCcceeecCCCccccCCCCeEEEEeeccCCCcCCccceEEEEEEeCHHHHHHHhccccccccCCCCEEecc
Confidence 97532 21 1234444443 2357899999999864332 11222222211110 000000000 0000112222
Q ss_pred ----eeecCCCCCCCceecccC-----cEEEEeecccCC-CCcccccChHHHHHHHHH
Q 001280 194 ----ASGTKGGSSGSPVIDWQG-----RAVALNAGSKSS-SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 194 ----~a~~~~G~SGgPv~n~~G-----~vVGi~~~~~~~-~~~~falPi~~i~~~l~~ 241 (1108)
....-.|.|||||+-.++ .++||.+.+..- .+.+.+.-+...+..+++
T Consensus 179 ~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~vyt~V~~y~~WI~~ 236 (242)
T 2qy0_B 179 HPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYVDWIKK 236 (242)
T ss_dssp CTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSSSCEEEEEGGGGHHHHHH
T ss_pred CCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCcCCCCcEEEEHHHHHHHHHH
Confidence 123557999999985332 599999876421 123444555555555544
No 485
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=97.83 E-value=3.3e-05 Score=69.67 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=44.1
Q ss_pred ceEEEEeecCCCHHhHh--ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEe
Q 001280 899 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFR 959 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~a--L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R 959 (1108)
.+++|..|.++|||+++ |++||+|++|||+++.++...+........+ +.+.++|.|
T Consensus 30 ~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~----~~v~l~v~r 88 (90)
T 1qav_A 30 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG----KEVVLEVKY 88 (90)
T ss_dssp EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC----SEEEEEEEE
T ss_pred CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CeEEEEEEE
Confidence 56889999999999986 9999999999999999754433222222333 678898887
No 486
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.83 E-value=1.1e-05 Score=76.14 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=49.6
Q ss_pred CeEEEEEecCCChhhhcC-CCCCCEEEEECCeecCCH--HHHHHHHHcCCCCceEEEEEEEeCC
Q 001280 1007 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNG 1067 (1108)
Q Consensus 1007 ~gV~V~~v~~gSpA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~v~~~~~~~~v~l~~v~rdg 1067 (1108)
.+++|..|.++|||+++| |++||.|++|||+++.++ +++...++. .++.+.|. +.|++
T Consensus 39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~r~~ 99 (113)
T 1um7_A 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR--AGQSVTIV-AQYRP 99 (113)
T ss_dssp CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS--CCSEEEEE-EECCH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCcEEEE-EEECc
Confidence 378999999999999999 999999999999999997 777777774 47788888 56554
No 487
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=97.83 E-value=1.8e-05 Score=76.82 Aligned_cols=60 Identities=15% Similarity=0.400 Sum_probs=50.4
Q ss_pred CCceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001280 296 ETGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
..+++| ..|.+++||++ ||++||+|++|||+.+.+ +.++..++....+..+.|+|.|++.
T Consensus 56 ~~~i~I-~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~ 119 (130)
T 1i16_A 56 DKPLTI-NRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119 (130)
T ss_dssp CCCCEE-EEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCCC
Confidence 356666 79999999998 899999999999999987 5677777777767789999998654
No 488
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.83 E-value=2.4e-05 Score=90.35 Aligned_cols=61 Identities=26% Similarity=0.356 Sum_probs=53.6
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhc-CCCCeEEEEEEECCEE
Q 001280 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDD-GVDKNIELLIERGGIS 357 (1108)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~-~~g~~v~l~V~R~g~~ 357 (1108)
..|++| ..|.++|||++ ||++||+|++|||+.+.+ +.++..++.. .+|+.++|+|.|+|+.
T Consensus 30 ~~gi~V-~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~ 94 (391)
T 3tsz_A 30 DVGIFV-AGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 94 (391)
T ss_dssp TTEEEE-EEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHH
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcc
Confidence 367776 79999999999 999999999999999976 7888888865 7899999999998763
No 489
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.79 E-value=1.4e-05 Score=74.30 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=47.4
Q ss_pred EEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC----CCCeEEEEEEECCE
Q 001280 301 VVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG----VDKNIELLIERGGI 356 (1108)
Q Consensus 301 Vv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~----~g~~v~l~V~R~g~ 356 (1108)
+|..|.+++||++ | |++||+|++|||+.+.+ +.++..++... .++.+++.|.|.++
T Consensus 35 ~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~~ 98 (103)
T 1ufx_A 35 RIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNS 98 (103)
T ss_dssp EEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred EEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEccc
Confidence 4479999999999 9 99999999999999966 88888777543 57889999988654
No 490
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Probab=97.78 E-value=0.00049 Score=86.19 Aligned_cols=182 Identities=15% Similarity=0.223 Sum_probs=99.0
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC--CeEEEEEecC---------CeEEeEEEEEEc
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~--~~~~~v~~~d---------~~~~~a~vv~~d 114 (1108)
.|-+|+|... .....++|.+|++. +|||+||++... ...+.|.+.. .+.+...-++.+
T Consensus 573 ~PW~VsL~~~---------~~~~~CGGSLIs~~--wVLTAAHCv~~~~~~~~~~V~lG~~~~~~~~~~~q~~~V~~i~~h 641 (791)
T 4dur_A 573 WPWQVSLRTR---------FGMHFCGGTLISPE--WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 641 (791)
T ss_dssp STTEEEEECT---------TSCEEEEEEEEETT--EEEECGGGGSSCCCGGGCEEEESCCBSSSCCTTCEEEEEEEEEEC
T ss_pred CCeEEEEEec---------CCCeEEEEEEEeCC--EEEECHHHcCCcCCCceEEEEeccccccCCCCccEEEEEEEEECC
Confidence 4667777542 13467999999965 999999999743 2344555432 245666666667
Q ss_pred CC-CceEEEEECCCCcccccccCCCCC--CcccCCCCEEEEEecCCCCC----CeEEEEEEEEecC---CCCCCCCCCcc
Q 001280 115 PV-HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSILAGTLARLDR---DAPHYKKDGYN 184 (1108)
Q Consensus 115 ~~-~DlAlLk~d~~~~~~~~~~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~~G~is~~~~---~~~~~~~~~~~ 184 (1108)
+. +|||||+++....-...+.++.|. ...+..|..+.+.|+..... .......+..+.. ....+......
T Consensus 642 p~~nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~~~~~s~~L~~~~v~ii~~~~C~~~~~~~~~i~ 721 (791)
T 4dur_A 642 PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQ 721 (791)
T ss_dssp TTCCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC---CCTTBCEEEEEEEECHHHHTSTTTTTTCCC
T ss_pred CCCCceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCCCCCCCCeeEEEEEEEeCHHHhhcccccCCCCC
Confidence 65 799999997532111123344343 33467799999999864321 1122222222221 11111111111
Q ss_pred cccceEEEEe-----eecCCCCCCCceeccc-C--cEEEEeecccCC---CCcccccChHHHHHHHHH
Q 001280 185 DFNTFYMQAA-----SGTKGGSSGSPVIDWQ-G--RAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1108)
Q Consensus 185 ~~~~~~i~~~-----a~~~~G~SGgPv~n~~-G--~vVGi~~~~~~~---~~~~falPi~~i~~~l~~ 241 (1108)
+ .+|=+. ...-.|.|||||+-.+ | .++||.+.+..- ..-+.+.-+...+..++.
T Consensus 722 ~---~~iCAg~~~gg~daC~GDSGGPLv~~~~~~~~LvGIvS~G~gC~~~~~PgVYTrVs~y~dWI~~ 786 (791)
T 4dur_A 722 S---TELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEG 786 (791)
T ss_dssp T---TEEEESCSSSCCCBCCSCTTCEEEEEETTEEEEEEECCTTTCCBBTTBCEEEEEGGGTHHHHHH
T ss_pred C---CeEEeccCCCCCCCCCCCcccceEEEeCCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 1 122221 2334689999998433 3 599999876532 122444555555555443
No 491
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=97.76 E-value=4.6e-05 Score=68.21 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=43.2
Q ss_pred ceEEEEeecCCCHHhH-h-ccCCCEEEEECCEEcCCh--hHHHHHHHhccCCCCCCCeEEEEEEe
Q 001280 899 QVLRVKGCLAGSKAEN-M-LEQGDMMLAINKQPVTCF--HDIENACQALDKDGEDNGKLDITIFR 959 (1108)
Q Consensus 899 ~~~~V~~V~~~s~A~~-a-L~~GDiIlsVnG~~V~~~--~dl~~~l~~~~~g~~~~~~v~l~V~R 959 (1108)
.+++|.+|.++|||++ + |++||+|++|||+++.++ .++..++. ..+ +.+.++|.+
T Consensus 28 ~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~--~~~----~~v~l~v~~ 86 (87)
T 4e34_A 28 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS--QQR----GEIEFEVVY 86 (87)
T ss_dssp EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHH--HCC----SEEEEEEEE
T ss_pred CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH--cCC----CeEEEEEEE
Confidence 4678999999999999 7 999999999999999655 55555553 333 567777754
No 492
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0
Probab=97.75 E-value=0.00046 Score=72.43 Aligned_cols=174 Identities=11% Similarity=0.095 Sum_probs=105.8
Q ss_pred ccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCceEEEEeecCCeEEeEE----EEEeeC
Q 001280 624 IEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGE----VVFLHP 699 (1108)
Q Consensus 624 ~~~S~V~V~~~~~~~~~~dg~~~~~~~GsG~iId~~~~~G~IlTnr~~V~~~~~~i~V~~~~~~~~~~a~----vv~~dp 699 (1108)
+...++.++.... | ....-.|+... .|||||+|........+.|+... |.-.-.. -+.--+
T Consensus 14 ia~~iC~l~n~sd------g---~~~~l~gigyG-----~~iItn~HLf~rnng~L~I~s~h-G~f~v~nt~~lki~~i~ 78 (241)
T 3mmg_A 14 ISACVCLLENSSD------G---HSERLFGIGFG-----PYIIANQHLFRRNNGELTIKTMH-GEFAVANSTQLQMKPVE 78 (241)
T ss_dssp HHTTEEEEEEEET------T---EEEEEEEEEET-----TEEEECGGGGSSTTCEEEEEETT-EEEEEEEGGGSCEEECT
T ss_pred hhheEEEEEEEeC------C---CEEEEEEEeEC-----CEEEEChhhcccCCCeEEEEECC-ceEEccCCCceeeEEeC
Confidence 5567777755543 2 23444565555 59999988877777889998886 5432222 244456
Q ss_pred CCcEEEEEECCCCCCcccccceeccccCCCccCCCCCEEEEEeeCCCCCceeeeeeEeccccccccCCCCCCccccccce
Q 001280 700 VHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNME 779 (1108)
Q Consensus 700 ~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~vG~p~~~~~~~~~~~Vt~~~~~~~i~~~~~~~y~~~~~~ 779 (1108)
..|+.|+|. |+++|+ --+-++|.. .+.||+|..||..+..... .++||+. +.+.+.. +..
T Consensus 79 g~DiiiIrm-PkDfpP----f~~kl~FR~---P~~~E~V~lVg~~fq~k~~--~s~vSes--S~i~p~~--------~~~ 138 (241)
T 3mmg_A 79 GRDIIVIKM-AKDFPP----FPQKLKFRQ---PTIKDRVCMVSTNFQQKSV--SSLVSES--SHIVHKE--------DTS 138 (241)
T ss_dssp BSSCEEEEC-CTTSCC----CCSCCCBCC---CCTTCCEEEEEEEECSSCE--EEEEEEE--ECCEECT--------TSS
T ss_pred CccEEEEeC-CCCCCC----cchhcccCC---CCCCCeEEEEEeecccCCc--cEEECCc--ceeEEcC--------CCC
Confidence 789999998 666654 011133432 4899999999987655321 2234421 1111111 112
Q ss_pred EEEE--ecccCCCCCceEEcC-CeeEEEEEeeccccccccCCCCCcceeEecccHHHHHHHHHHH
Q 001280 780 VIEL--DTDFGSTFSGVLTDE-HGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKI 841 (1108)
Q Consensus 780 ~I~~--d~~ig~~sGGpL~d~-~G~VvGi~~~~~~~~~~~~~~~~~~~~~~aipi~~i~~vl~~l 841 (1108)
+... ++.-|. ||+||++. ||.+|||.+..... ....|+-++|-+....+|+..
T Consensus 139 fWkHwIsT~~G~-CGlPlVs~~Dg~IVGiHsl~~~~--------~~~N~F~~f~~~f~~~~L~~~ 194 (241)
T 3mmg_A 139 FWQHWITTKDGQ-AGSPLVSIIDGNILGIHSLTHTT--------NGSNYFVEFPEKFVATYLDAA 194 (241)
T ss_dssp EEEECBCCCTTC-TTCEEEETTTCCEEEEEEEEETT--------TCCEEEEECCTTHHHHHTTCS
T ss_pred EEEEEcCCCCCc-CCCeEEEcCCCcEEEEEecccCC--------CCcEEEEcCCHHHHHHHhhCc
Confidence 3333 333355 99999998 69999998775432 346777777776666565554
No 493
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=97.75 E-value=8.5e-05 Score=69.87 Aligned_cols=59 Identities=25% Similarity=0.441 Sum_probs=47.6
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhc-CCCCeEEEEEEECCEEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDD-GVDKNIELLIERGGISM 358 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~-~~g~~v~l~V~R~g~~~ 358 (1108)
.|.+| ..|.+ ++.. ||++||+|++|||+.+.+. .++..++.. ..|+.+.|+|.|+|...
T Consensus 34 ~g~~V-~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~ 96 (113)
T 3soe_A 34 TGQKV-KMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPS 96 (113)
T ss_dssp TEEEE-EEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC-
T ss_pred CCcEE-EEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCccC
Confidence 46565 67877 5666 9999999999999999955 678888865 56899999999998743
No 494
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.74 E-value=3.7e-05 Score=73.31 Aligned_cols=59 Identities=29% Similarity=0.528 Sum_probs=46.7
Q ss_pred CceEEEEEecCCCcccc---CCCCCCEEEEECCEEeCCh--hHHHHHHhcCC---CCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL---RLEPGDVLVRVNGEVITQF--LKLETLLDDGV---DKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~---gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~---g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.++|||++ ||++||+|++|||+.+.++ .++..++.... +.+|.|+|.|+..
T Consensus 41 ~~v~V-~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 107 (119)
T 2cs5_A 41 MPVIV-SRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV 107 (119)
T ss_dssp EEEEE-EEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred CCeEE-EEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence 46666 79999999998 8999999999999999874 55555554322 3589999999865
No 495
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.72 E-value=1.6e-05 Score=74.96 Aligned_cols=58 Identities=24% Similarity=0.449 Sum_probs=47.7
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001280 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~ 356 (1108)
.|++| ..|.+++||++ | |++||+|++|||+++.++. ++..++. ..++.+.|+|.|+++
T Consensus 39 ~gv~V-~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~r~~~ 100 (113)
T 1um7_A 39 EGIFV-SFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK-RAGQSVTIVAQYRPE 100 (113)
T ss_dssp CCCBC-CCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHH-SCCSEEEEEEECCHH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCcEEEEEEECcc
Confidence 57776 79999999999 9 9999999999999999984 3333333 568899999998754
No 496
>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...
Probab=97.72 E-value=0.00066 Score=75.10 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=62.9
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCC-------CCeEEEEEecC----------CeEEeE
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKP-------GPVVAEAMFVN----------REEIPV 108 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~-------~~~~~~v~~~d----------~~~~~a 108 (1108)
.|-+|.|... ......+.|.+|+++ +|||+|||+.. ....+.|++.. .+.+.+
T Consensus 42 ~Pw~v~l~~~--------~~~~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v 111 (289)
T 2bdy_A 42 SPWQVMLFRK--------SPQELLCGASLISDR--WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISML 111 (289)
T ss_dssp CTTEEEEEET--------TTTEEEEEEEECSSS--EEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEE
T ss_pred CCCeEEEEEC--------CCCCEEEEEEEecCC--EEEEcHHhcccCccccccCcccEEEEEccccccccCCCcceeeee
Confidence 4667777532 123467999999965 99999999842 12345565532 233455
Q ss_pred EEEEEcCC--------CceEEEEECCCC-cccccccCCCCCCcc-----cCCCCEEEEEecCC
Q 001280 109 YPIYRDPV--------HDFGFFRYDPSA-IQFLNYDEIPLAPEA-----ACVGLEIRVVGNDS 157 (1108)
Q Consensus 109 ~vv~~d~~--------~DlAlLk~d~~~-~~~~~~~~l~l~~~~-----~~~G~~V~~iG~p~ 157 (1108)
+-+..||. +||||||++..- +. ..+.++.|.... +..|..+.+.|+..
T Consensus 112 ~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~-~~v~picLp~~~~~~~~~~~g~~~~v~GWG~ 173 (289)
T 2bdy_A 112 EKIYIHPRYNWRENLDRDIALMKLKKPVAFS-DYIHPVCLPDRETAASLLQAGYKGRVTGWGN 173 (289)
T ss_dssp EEEEECTTCBTTTTCBTCCEEEEESSCCCCB-TTBCCCBCCCHHHHHHHCCTTCEEEEEESSC
T ss_pred EEEEECCCCCCCCCCCCeEEEEEECCccccC-CcccccCCCCccccccccCCCCEEEEECCCc
Confidence 55566553 599999997532 21 124455554322 46899999999764
No 497
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.72 E-value=3.6e-05 Score=73.39 Aligned_cols=57 Identities=28% Similarity=0.477 Sum_probs=46.9
Q ss_pred ceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCC--hhHHHHHHhcC---CCCeEEEEEEEC
Q 001280 298 GLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQ--FLKLETLLDDG---VDKNIELLIERG 354 (1108)
Q Consensus 298 G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~---~g~~v~l~V~R~ 354 (1108)
|-++|..|.++|||++ ||++||+|++|||+.+.+ +.++..++... .|+.|+|+|.|.
T Consensus 43 ~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 4355579999999998 799999999999999997 56777777432 488999999984
No 498
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=97.71 E-value=1.2e-05 Score=84.99 Aligned_cols=60 Identities=27% Similarity=0.415 Sum_probs=52.4
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeE-EEEEEECCEEE
Q 001280 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNI-ELLIERGGISM 358 (1108)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v-~l~V~R~g~~~ 358 (1108)
.|++| ..|.+++||++ ||+.||+|++|||+.|. ++.++..++... |+.| .|+|.|+|+..
T Consensus 33 ~gv~V-~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g~~~ 96 (216)
T 2krg_A 33 PGQFI-RSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRETDEF 96 (216)
T ss_dssp CSCBE-EEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHHHHHH
T ss_pred CCeEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEECCEEE
Confidence 47777 69999999999 99999999999999999 899998888655 7888 89998887643
No 499
>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}
Probab=97.70 E-value=0.001 Score=75.70 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=60.4
Q ss_pred ccEEEEEEEeCCCcEEEEcccccCCCCe----------EEEEEecCCeEEeEEEEEEcCC---CceEEEEECCC-Ccccc
Q 001280 67 ASYATGFVVDKRRGIILTNRHVVKPGPV----------VAEAMFVNREEIPVYPIYRDPV---HDFGFFRYDPS-AIQFL 132 (1108)
Q Consensus 67 ~~~GSGfvV~~~~G~ILTn~HVV~~~~~----------~~~v~~~d~~~~~a~vv~~d~~---~DlAlLk~d~~-~~~~~ 132 (1108)
...+.|.+|+++ ||||+||++..... .........+.+.++-+..||. +||||||++.. .+. .
T Consensus 125 ~~~CGGsLIs~~--~VLTAAHCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~HP~y~~nDIALlkL~~~v~~~-~ 201 (347)
T 4f4o_C 125 NLTSGATLINEQ--WLLTTAKNLRLGHKNDTKAKDIAPTLRLYVGKKQEVEIEKVIFHPDNSTVDIGLIKLKQKVPVN-E 201 (347)
T ss_dssp CCEEECCBCSSS--EEEECHHHHTTTSCTTCCHHHHGGGCEEEETTTEEECEEEEEECSCTTTCCCEEEEESSCCCCS-S
T ss_pred CEEEEEEEEcCC--EEEeCcccccCCCCCcceEEeeeeeeeecCCCeEEEEEEEEEECcCCCCCCEEEEEECCCccCC-C
Confidence 457999999964 99999999864211 1233444566777887888886 69999999753 121 1
Q ss_pred cccCCCCC-CcccCCCCEEEEEecCCC
Q 001280 133 NYDEIPLA-PEAACVGLEIRVVGNDSG 158 (1108)
Q Consensus 133 ~~~~l~l~-~~~~~~G~~V~~iG~p~g 158 (1108)
.+.++.|. ...+..|...++.|+...
T Consensus 202 ~v~PicLp~~~~~~~g~~~~v~GWG~~ 228 (347)
T 4f4o_C 202 RVMPICLPSKDYVNVGLVGYVSGWGRN 228 (347)
T ss_dssp SCCCCBCCSSCCCCTTCEEEEEECSBC
T ss_pred ceeeeecCccccCCCCcEEEEeccccC
Confidence 23444443 345678999999987643
No 500
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A
Probab=97.65 E-value=0.001 Score=77.26 Aligned_cols=181 Identities=12% Similarity=0.124 Sum_probs=98.2
Q ss_pred CCceEEEEEeeeeccCCCCCCccEEEEEEEeCCCcEEEEcccccCCC---CeEEEEEecC-------CeEEeEEEEEEcC
Q 001280 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG---PVVAEAMFVN-------REEIPVYPIYRDP 115 (1108)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~ILTn~HVV~~~---~~~~~v~~~d-------~~~~~a~vv~~d~ 115 (1108)
.|-+|.|.. ...+.|.+|+++ +|||+||++... ...+.|.+.. ...+.++-+..||
T Consensus 173 ~Pw~v~l~~------------~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~~V~~G~~~~~~~~~~~~~v~~i~~Hp 238 (403)
T 1zjk_A 173 FPWQVLILG------------GTTAAGALLYDN--WVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHE 238 (403)
T ss_dssp STTEEEEEE------------SCCEEEEEETTT--EEEECHHHHGGGTTCSTTEEEEESCSBTTCSCCEEEEEEEEEECT
T ss_pred cCCEeEecc------------CCceEEEEecCC--EEEEcHHhCCCCCCCcceEEEEccccccCCCCceEEeEEEEEECC
Confidence 466777764 135899999965 999999999642 3445565542 2456666666665
Q ss_pred --------CCceEEEEECCCC-cccccccCCCCCCcc----cCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CC
Q 001280 116 --------VHDFGFFRYDPSA-IQFLNYDEIPLAPEA----ACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--AP 176 (1108)
Q Consensus 116 --------~~DlAlLk~d~~~-~~~~~~~~l~l~~~~----~~~G~~V~~iG~p~g~~----~si~~G~is~~~~~--~~ 176 (1108)
.+||||||++..- +. ..+.++.|.... +..|+.+.+.|+..... .......+..+... ..
T Consensus 239 ~y~~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~~~v~v~~~~~C~~ 317 (403)
T 1zjk_A 239 GYTHDAGFDNDIALIKLNNKVVIN-SNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTA 317 (403)
T ss_dssp TCCTTSCCTTCCEEEEESSCCCCB-TTBCCCBCCCGGGGGGSSTTCEEEEEESCTTSSSCCCSBCEEEEEEEECHHHHHH
T ss_pred CCCCCCCCcccEEEEEeCCcCcCC-CceecccCCCcccccccCCCCeEEEEcCCcCCCCccCcccEEEEEeEeCHHHHhh
Confidence 3699999998542 21 134444444322 57899999999864322 12222223222210 00
Q ss_pred CCCCCCc--ccccceEEEE-----eeecCCCCCCCceecc---cC--cEEEEeecccCC----CCcccccChHHHHHHHH
Q 001280 177 HYKKDGY--NDFNTFYMQA-----ASGTKGGSSGSPVIDW---QG--RAVALNAGSKSS----SASAFFLPLERVVRALR 240 (1108)
Q Consensus 177 ~~~~~~~--~~~~~~~i~~-----~a~~~~G~SGgPv~n~---~G--~vVGi~~~~~~~----~~~~falPi~~i~~~l~ 240 (1108)
.|....+ ......+|=+ ....-.|.|||||+-. +| .++||.+.+... ...+.+.-+...+..++
T Consensus 318 ~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g~~~C~~~~~p~vyt~V~~y~~WI~ 397 (403)
T 1zjk_A 318 AYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIE 397 (403)
T ss_dssp HTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEECSCC--CCCCEEEEEGGGGHHHHH
T ss_pred hhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHH
Confidence 0111000 0001112222 1234579999999853 34 599999876311 12344445554555544
Q ss_pred H
Q 001280 241 F 241 (1108)
Q Consensus 241 ~ 241 (1108)
+
T Consensus 398 ~ 398 (403)
T 1zjk_A 398 N 398 (403)
T ss_dssp H
T ss_pred H
Confidence 3
Done!