BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001281
(1108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 593 KFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCS 652
K+ L L L G +T+LP IK L LR L+++ ++ SLP S L+ D +
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-N 303
Query: 653 RLTRLPSKMWNLINLRHLDIEGANSLE 679
+T LP + NL NL+ L +EG N LE
Sbjct: 304 MVTTLPWEFGNLCNLQFLGVEG-NPLE 329
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 598 RVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRL 657
L L + + +I + L L + G + LP +L +LRVL L +RLT L
Sbjct: 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSL 285
Query: 658 PSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTL 694
P+++ + L++ N + +P+ L +LQ L
Sbjct: 286 PAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFL 321
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 589 DMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLIL 648
D + L+ +++ + +LP++ ++ L L +A +R+LP S +SL LR L +
Sbjct: 98 DQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157
Query: 649 RDCSRLTRLPSKMWN---------LINLRHLDIEGANSLEGMPYGMEKLKHLQTL 694
R C LT LP + + L+NL+ L +E + +P + L++L++L
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIANLQNLKSL 211
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAG-TQIRSLPESTSSLMHLRVLILR 649
+ + L+ L + ++ L +I L L L++ G T +R+ P L+ LIL+
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 650 DCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKL 688
DCS L LP + L L LD+ G +L +P + +L
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 130/334 (38%), Gaps = 70/334 (20%)
Query: 213 IPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKA-WVCVSDEFDVLSISMALLESITCKPC 271
+ I GMAG GK+ LA E D ++ + F WV V + D + M L T
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 208
Query: 272 DLKALNEVQVQLQKALDGKKFL---------LVLDDVWNENYSLWEDLKAPFLAAAPNSK 322
D + + +++A D + L L+LDDVW+ W A +
Sbjct: 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKAFDSQCQ 259
Query: 323 IIVTTRHSHVA-STMGSV----------EHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQR 371
I++TTR V S MG + L +LS FV M A + H
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILS----LFVNMKKADLP-EQAH--- 311
Query: 372 ISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWEDIL----NSNIWDLPEQS----- 422
++++C+G PL +G LLR N WE L N + + S
Sbjct: 312 -------SIIKECKGSPLVVSLIGALLRD--FPNRWEYYLKQLQNKQFKRIRKSSSYDYE 362
Query: 423 GVQPVLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDW 482
+ + +S L +K + +I KD ++ K L LW E +++ED
Sbjct: 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEVED- 413
Query: 483 GSECFHDLVSRS-IFQQSSGDGSKFVMHDLVHDL 515
+ V++S +F +G ++ +HDL D
Sbjct: 414 ---ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 130/334 (38%), Gaps = 70/334 (20%)
Query: 213 IPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKA-WVCVSDEFDVLSISMALLESITCKPC 271
+ I GMAG GK+ LA E D ++ + F WV V + D + M L T
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 214
Query: 272 DLKALNEVQVQLQKALDGKKFL---------LVLDDVWNENYSLWEDLKAPFLAAAPNSK 322
D + + +++A D + L L+LDDVW+ W A +
Sbjct: 215 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKAFDSQCQ 265
Query: 323 IIVTTRHSHVA-STMGSV----------EHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQR 371
I++TTR V S MG + L +LS FV M A + H
Sbjct: 266 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILS----LFVNMKKADLP-EQAH--- 317
Query: 372 ISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWEDIL----NSNIWDLPEQS----- 422
++++C+G PL +G LLR N WE L N + + S
Sbjct: 318 -------SIIKECKGSPLVVSLIGALLRD--FPNRWEYYLKQLQNKQFKRIRKSSSYDYE 368
Query: 423 GVQPVLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDW 482
+ + +S L +K + +I KD ++ K L LW E +++ED
Sbjct: 369 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEVED- 419
Query: 483 GSECFHDLVSRS-IFQQSSGDGSKFVMHDLVHDL 515
+ V++S +F +G ++ +HDL D
Sbjct: 420 ---ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 597 LRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPEST-SSLMHLRVLILRDCSRLT 655
+R L+L G + + +++KEL L YL + G Q++SLP L +L+ L+L + ++L
Sbjct: 65 VRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQ 122
Query: 656 RLPSKMWN-LINLRHLDIEGANSLEGMPYGM-EKLKHLQTL 694
LP +++ L NL +L++ N L+ +P G+ +KL +L L
Sbjct: 123 SLPDGVFDKLTNLTYLNL-AHNQLQSLPKGVFDKLTNLTEL 162
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 141/338 (41%), Gaps = 78/338 (23%)
Query: 213 IPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKA-WVCVSDE--------FDVLSISMALL 263
+ I GMAG GK+ LA E D ++ + F WV + + L + +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 264 ESITCK-PCDLK-ALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNS 321
ES + + P +++ A + ++V + + + LL+LDDVW+ P++ A ++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLMLRK--HPRSLLILDDVWD-----------PWVLKAFDN 256
Query: 322 K--IIVTTRHSHVASTMGSVEHY-----------NLSLLSDDDCWFVFMNHAFYTRDHIH 368
+ I++TTR V ++ +H L +LS +F+N +
Sbjct: 257 QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS------LFVN--------MK 302
Query: 369 VQRISGLFHKKVVQKCRGLPLAAKTLGGLLRT----------KHGDNAWEDILNSNIWDL 418
+ + H ++++C+G PL +G LLR + + ++ I S+ +D
Sbjct: 303 KEDLPAEAHS-IIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDY 361
Query: 419 PEQSGVQPVLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQ 478
+ + +S L +K + +I KD ++ K L LW E ++
Sbjct: 362 ---EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------TEE 410
Query: 479 LEDWGSECFHDLVSRS-IFQQSSGDGSKFVMHDLVHDL 515
+ED + V++S +F +G + +HDL D
Sbjct: 411 VED----ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 594 FKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPEST-SSLMHLRVLILRDCS 652
+R L+L G + + +++KEL L YL + G Q++SLP L +L+ L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 653 RLTRLPSKMWN-LINLRHLDIEGANSLEGMPYGM-EKLKHLQTL 694
+L LP +++ L NL +L + N L+ +P G+ +KL +L L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLY-HNQLQSLPKGVFDKLTNLTRL 162
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 140/338 (41%), Gaps = 78/338 (23%)
Query: 213 IPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKA-WVCVSDE--------FDVLSISMALL 263
+ I GMAG GK+ LA E D ++ + F WV + + L + +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 264 ESITCK-PCDLK-ALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNS 321
ES + + P +++ A + ++V + + + LL+LDDVW+ P++ A ++
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVLMLRK--HPRSLLILDDVWD-----------PWVLKAFDN 263
Query: 322 K--IIVTTRHSHVASTMGSVEHY-----------NLSLLSDDDCWFVFMNHAFYTRDHIH 368
+ I++TT V ++ +H L +LS +F+N +
Sbjct: 264 QCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILS------LFVN--------MK 309
Query: 369 VQRISGLFHKKVVQKCRGLPLAAKTLGGLLRT----------KHGDNAWEDILNSNIWDL 418
+ + H ++++C+G PL +G LLR + + ++ I S+ +D
Sbjct: 310 KEDLPAEAHS-IIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDY 368
Query: 419 PEQSGVQPVLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQ 478
+ + +S L +K + +I KD ++ K L LW E ++
Sbjct: 369 ---EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------TEE 417
Query: 479 LEDWGSECFHDLVSRS-IFQQSSGDGSKFVMHDLVHDL 515
+ED + V++S +F +G + +HDL D
Sbjct: 418 VED----ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 596 KLRVLSLEGYYVTQLPNSI-KELKLLRYLNVAGTQIRSLPEST-SSLMHLRVLILRDCSR 653
L+ L L + LP + L L L++ Q+ LP + L+HL+ L + C++
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNK 123
Query: 654 LTRLPSKMWNLINLRHLDIEGANSLEGMPYG 684
LT LP + L +L HL ++ N L+ +P+G
Sbjct: 124 LTELPRGIERLTHLTHLALD-QNQLKSIPHG 153
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 548 GHFDSKIRFESLYEVPHLRTFLPVFIRGG----TDTSYITN---VLLSDMLPKFKKLRVL 600
G FDS I + LY + LPV + T TN VL S + + L+ L
Sbjct: 58 GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117
Query: 601 SLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPEST----SSLMH 642
+ +T+LP I+ L L +L + Q++S+P SSL H
Sbjct: 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 597 LRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTR 656
L+ L + G +T LP ELK L V+G ++ SLP S L+ L V ++LTR
Sbjct: 223 LKELIVSGNRLTSLPVLPSELK---ELMVSGNRLTSLPMLPSGLLSLSVY----RNQLTR 275
Query: 657 LPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLSN 696
LP +L HL E +LEG P L+ L+ +++
Sbjct: 276 LPE------SLIHLSSETTVNLEGNPLSERTLQALREITS 309
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 14/137 (10%)
Query: 566 RTFLPVFIRGGTDTSYI---TNVLLS---DMLPKFKKLRVLSLEGYYVTQLPNSI-KELK 618
RT +P I T+Y+ TN L S + + L L L G + LPN + +L
Sbjct: 19 RTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 619 LLRYLNVAGTQIRSLPEST-SSLMHLRVLILRDCSRLTRLPSKMWN-LINLRHLDIEGAN 676
L YLN++ Q++SLP L L+ L L + ++L LP +++ L L+ L + N
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLY-QN 134
Query: 677 SLEGMPYGM-EKLKHLQ 692
L+ +P G+ ++L LQ
Sbjct: 135 QLKSVPDGVFDRLTSLQ 151
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 55 LGDAEEKQLTDEAVKIWLDDLRDLAYDAEDILDEFATQ 92
+G+ +QL D K+W D++R+L+Y ED++D+F Q
Sbjct: 45 IGEVPREQL-DSQDKLWADEVRELSYVIEDVVDKFLVQ 81
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 804 MEVLELQNCQ----NCTSLPS-LSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLE 858
+E L+L+ C+ +C L S L +LK+LT+ + G+ G+ + ++ LE
Sbjct: 140 LEKLQLEYCRLTAASCEPLASVLRATRALKELTVSN-NDIGEAGARVLGQGLADSACQLE 198
Query: 859 TLRFEN--LPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPELLPSL 907
TLR EN L C D G++A +SLREL + + EL P L
Sbjct: 199 TLRLENCGLTPANCKDL--CGIVASQASLRELDLGSNGLGDAGIAELCPGL 247
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 596 KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE 635
K++VL L + +P + L+ L+ LNVA Q++S+P+
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
>pdb|1HDM|A Chain A, Histocompatibility Antigen Hla-Dm
Length = 201
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 840 SIG-SEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSG 898
S+G SE Y ED L F + R LPE+ W ++ + E I + PK G
Sbjct: 30 SVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAILFDKEFCEWMIQQIPKLDG 89
Query: 899 KLP 901
K+P
Sbjct: 90 KIP 92
>pdb|1UF2|A Chain A, The Atomic Structure Of Rice Dwarf Virus (Rdv)
pdb|1UF2|B Chain B, The Atomic Structure Of Rice Dwarf Virus (Rdv)
Length = 1019
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 202 SDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMA 261
S DP D +F V IV I ++AV D + ++ +L + A
Sbjct: 635 SVDPQDLLFGVFGIVPQYQIL----------NEAVPD-------FFAGGEDILILQLIRA 677
Query: 262 LLESITCK----PCDLKALNEV--------QVQLQKALDGKKFLLVLDDVWNENYSLWED 309
+ ++++ K P D+ L EV V +Q+ +D +K+ + + W++
Sbjct: 678 VYDTLSNKLGRNPADIFHLEEVFKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDN 737
Query: 310 -LKAPFLAAAPNSKIIVTTRHSHVASTMGSVEHYNLSLLSDDDCWFVFMNHAFYTR 364
L+ P PN ++ T+ HV + M + H ++ DC+++ N F R
Sbjct: 738 FLRRPVAQRLPNLYSVIMTQADHVYNYMTQLTH----IIPITDCFYIVKNSGFVDR 789
>pdb|3N9T|A Chain A, Cryatal Structure Of Hydroxyquinol 1,2-Dioxygenase From
Pseudomonas Putida Dll-E4
Length = 290
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 27/129 (20%)
Query: 496 FQQSSGDGSKFVMHDLVHDLAQLVSGESICRLEEANKLSRRFERVRHSSYTRGHFDSKIR 555
F+ S K +M LV L VS + E FE +R + T D K+R
Sbjct: 20 FETSPNPRFKQIMQSLVRHLHDFVSEVELTEQE-------WFEGIRFLTATGQKCDGKVR 72
Query: 556 FESLY------------EVPHLRT--------FLPVFIRGGTDTSYITNVLLSDMLPKFK 595
E + + H ++ F P FI G D Y N+ L+D +P
Sbjct: 73 QEFILLSDTLGVSMLVDAINHRQSTNATETTVFGPFFIEGMPDRGYGENMALTDGVPALV 132
Query: 596 KLRVLSLEG 604
RVL ++G
Sbjct: 133 YGRVLDVQG 141
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 596 KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE 635
+++VL L + +P + +L+ L+ LNVA Q++S+P+
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD 461
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 386 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 441
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 442 YRKRFGMKPYTSFQELTGEKEMAAELEELY 471
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 390 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 445
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 446 YRKRFGMKPYTSFQELTGEKEMAAELEELY 475
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 386 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 441
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 442 YRKRFGMKPYTSFQELTGEKEMAAELEELY 471
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 410 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 465
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 466 YRKRFGMKPYTSFQELTGEKEMAAELEELY 495
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 410 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 465
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 466 YRKRFGMKPYTSFQELTGEKEMAAELEELY 495
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 379 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 434
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 435 YRKRFGMKPYTSFQELTGEKEMAAELEELY 464
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 379 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 434
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 435 YRKRFGMKPYTSFQELTGEKEMAAELEELY 464
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 378 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 433
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 434 YRKRFGMKPYTSFQELTGEKEMAAELEELY 463
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 378 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 433
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 434 YRKRFGMKPYTSFQELTGEKEMAAELEELY 463
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 379 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 434
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 435 YRKRFGMKPYTSFQELTGEKEMAAELEELY 464
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 475 NNKQLEDWGSECFHDLVSRSIFQQSSG--DGSKFVMHDLVHDLAQLVSGESICRLEEANK 532
N L D+G E D SR Q +G G + + H ++H ++ + RL+ N+
Sbjct: 378 NTSMLVDYGVEALVDAFSR----QPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNE 433
Query: 533 LSRRFERVRHSSYTR--GHFDSKIRFESLY 560
+RF ++S+ G + E LY
Sbjct: 434 YRKRFGMKPYTSFQELTGEKEMAAELEELY 463
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 159 QLTPGGTSSAIAAQQRPPSSSVRTERAVYGRDDDKAKILDMVLSDDP 205
+L PGG +S + A +P V+ Y D A+I+D+VL+ P
Sbjct: 21 ELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGP 67
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 854 FKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSG-----KLPELLPSLE 908
F+ L LR NL DT LLAG LR L++ G L +++ SLE
Sbjct: 420 FQNLHLLRVLNLSHC-LLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE 478
Query: 909 ILVISKCADLVVPFSSF 925
IL++S C L + +F
Sbjct: 479 ILILSSCNLLSIDQQAF 495
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 558 SLYEVPHLRTFLPVFIRGGTDTSYITNVLLS---DMLPKFKKLRVLSLEGYYVTQLPNSI 614
SL V H R+F+ I D SY+TN L D +P K R+ + + T PN I
Sbjct: 152 SLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDI 211
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 600 LSLEGYYVTQLPNSI-KELKLLRYLNVAGTQIRSLPEST-SSLMHLRVLILRDCSRLTRL 657
L LE + LP+ + +L L L+++ QI+SLP+ L L +L L + ++L L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSL 91
Query: 658 PSKMWN-LINLRHLDIEGANSLEGMPYGM-EKLKHLQTL 694
P+ +++ L L+ L ++ N L+ +P G+ ++L LQ +
Sbjct: 92 PNGVFDKLTQLKELALD-TNQLKSVPDGIFDRLTSLQKI 129
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 558 SLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKE 616
+L VP+L V++R + + + ML + +L+ + L G + + P + +
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294
Query: 617 LKLLRYLNVAGTQIRSLPEST-SSLMHLRVLIL 648
L LR LNV+G Q+ +L ES S+ +L LIL
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 619 LLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANS 677
LL YL V+ Q+ LPE SS + + + +L LP + I + +E
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL-EFIAAGNNQLEELPE 190
Query: 678 LEGMPY---------GMEKLKHLQ-TLSNFIVGKDTGSGLKDLKNLKFL 716
L+ +P+ ++KL L +L + + G + L +L+NL FL
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 239
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 22/226 (9%)
Query: 510 DLVHDLAQLVSGESICRLEEANKLSRRFERVRHSSYTRGHFDSKIRFESLY--EVPHLRT 567
D ++ +S E + LE+A LS F G FDS I F+SL P+L
Sbjct: 156 DFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTI-FQSLNFGGTPNLSV 214
Query: 568 FLPVFIRGGTDTSYITNV-------LLSDMLPKFKKLRVLSL---EGYYVTQLPNSIKEL 617
T + ++ + S ML ++ V SL E + + +
Sbjct: 215 IFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCF 274
Query: 618 KLLRYLNVAGTQIRSLPESTSSLMHLRVLIL--RDCSRLTRLPSKMWNLINLRHLDIEGA 675
L+ L++ T ++ LP L L+ L+L +L ++ + N +L HL I G
Sbjct: 275 TQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAA--NFPSLTHLYIRGN 332
Query: 676 NSLEGMPYG-MEKLKHLQTLS---NFIVGKDTGS-GLKDLKNLKFL 716
+ G +EKL +LQTL N I D S LK+L +L+ L
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,441,035
Number of Sequences: 62578
Number of extensions: 1355179
Number of successful extensions: 3317
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 3273
Number of HSP's gapped (non-prelim): 72
length of query: 1108
length of database: 14,973,337
effective HSP length: 109
effective length of query: 999
effective length of database: 8,152,335
effective search space: 8144182665
effective search space used: 8144182665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)