Query 001281
Match_columns 1108
No_of_seqs 712 out of 4795
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 20:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.3E-84 7.2E-89 774.5 45.2 802 35-915 25-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.5E-64 2.1E-68 636.6 52.3 474 182-695 182-687 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-41 2.3E-46 373.3 15.8 275 189-473 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 6E-35 1.3E-39 375.1 26.6 506 538-1101 69-590 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.3E-33 2.8E-38 362.8 25.5 501 537-1095 92-607 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.3E-27 5E-32 254.3 -7.5 365 594-1101 6-381 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.4E-27 7.3E-32 241.2 -15.1 274 773-1093 248-539 (565)
8 KOG4194 Membrane glycoprotein 99.9 1.1E-24 2.4E-29 232.8 3.4 358 596-1065 79-447 (873)
9 KOG4194 Membrane glycoprotein 99.9 2.2E-24 4.8E-29 230.6 3.6 384 597-1091 54-448 (873)
10 KOG0618 Serine/threonine phosp 99.9 5.5E-25 1.2E-29 248.4 -5.7 103 591-695 41-143 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.8E-21 3.9E-26 249.4 25.3 239 801-1073 656-909 (1153)
12 KOG0618 Serine/threonine phosp 99.9 2.6E-24 5.6E-29 243.1 -8.7 111 561-681 43-153 (1081)
13 KOG0472 Leucine-rich repeat pr 99.9 5E-25 1.1E-29 225.4 -14.9 449 589-1100 62-522 (565)
14 KOG0444 Cytoskeletal regulator 99.8 4.2E-23 9E-28 221.9 -4.5 82 999-1090 313-394 (1255)
15 KOG4237 Extracellular matrix p 99.6 7.7E-18 1.7E-22 173.2 -5.4 111 584-695 80-194 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 2.6E-14 5.6E-19 169.3 16.9 255 743-1068 201-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 6.8E-14 1.5E-18 165.7 15.7 79 595-683 201-279 (788)
18 PRK04841 transcriptional regul 99.4 1.3E-11 2.9E-16 158.5 26.5 292 183-520 13-332 (903)
19 PRK15370 E3 ubiquitin-protein 99.4 8.4E-13 1.8E-17 157.9 11.1 135 779-937 180-315 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 1.6E-12 3.5E-17 155.4 12.3 159 595-836 178-336 (754)
21 KOG4237 Extracellular matrix p 99.3 5.7E-14 1.2E-18 145.1 -4.5 277 533-836 62-357 (498)
22 KOG0617 Ras suppressor protein 99.3 4.8E-14 1.1E-18 128.3 -5.8 129 558-696 28-157 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.3 2.8E-12 6.1E-17 155.8 6.8 100 595-695 545-648 (889)
24 PRK00411 cdc6 cell division co 99.2 2.9E-09 6.3E-14 122.3 26.1 299 182-499 28-358 (394)
25 KOG0617 Ras suppressor protein 99.2 4.5E-13 9.7E-18 122.0 -5.4 85 591-676 29-113 (264)
26 TIGR03015 pepcterm_ATPase puta 99.1 4.9E-09 1.1E-13 113.5 21.4 182 210-398 43-242 (269)
27 PRK00080 ruvB Holliday junctio 99.1 1.2E-09 2.5E-14 121.1 15.5 277 183-500 24-311 (328)
28 TIGR02928 orc1/cdc6 family rep 99.1 3.1E-08 6.7E-13 112.5 26.7 303 183-499 14-350 (365)
29 TIGR00635 ruvB Holliday juncti 99.1 3.3E-09 7.1E-14 117.0 17.2 276 184-500 4-290 (305)
30 PF01637 Arch_ATPase: Archaeal 99.0 8.2E-10 1.8E-14 117.2 10.7 195 186-393 1-233 (234)
31 COG2909 MalT ATP-dependent tra 99.0 3.9E-08 8.4E-13 113.4 21.9 289 194-521 25-339 (894)
32 KOG4341 F-box protein containi 98.9 1.6E-11 3.4E-16 128.5 -8.4 277 804-1097 140-441 (483)
33 cd00116 LRR_RI Leucine-rich re 98.9 1.8E-10 4E-15 128.7 -0.7 87 590-676 18-119 (319)
34 PF05729 NACHT: NACHT domain 98.9 1.4E-08 3E-13 101.1 11.5 144 211-360 1-163 (166)
35 COG3899 Predicted ATPase [Gene 98.8 1.8E-07 4E-12 114.9 20.0 311 185-517 1-383 (849)
36 PTZ00112 origin recognition co 98.8 7.9E-07 1.7E-11 103.5 22.4 301 183-498 754-1085(1164)
37 cd00116 LRR_RI Leucine-rich re 98.8 1.3E-09 2.9E-14 121.7 -0.3 114 559-676 19-148 (319)
38 COG3903 Predicted ATPase [Gene 98.6 6.1E-08 1.3E-12 103.3 7.8 292 210-520 14-314 (414)
39 COG4886 Leucine-rich repeat (L 98.6 3.1E-08 6.8E-13 113.9 4.4 103 591-695 112-215 (394)
40 PF05496 RuvB_N: Holliday junc 98.6 1.2E-06 2.6E-11 86.8 14.5 182 183-398 23-225 (233)
41 PRK13342 recombination factor 98.6 7.2E-07 1.6E-11 101.9 14.4 177 184-395 12-197 (413)
42 PF14580 LRR_9: Leucine-rich r 98.5 7.1E-08 1.5E-12 93.8 5.1 128 560-699 16-150 (175)
43 KOG0532 Leucine-rich repeat (L 98.5 4.1E-09 8.9E-14 114.8 -4.1 56 778-836 212-271 (722)
44 COG2256 MGS1 ATPase related to 98.5 6.6E-07 1.4E-11 94.7 12.3 155 209-390 47-208 (436)
45 PRK06893 DNA replication initi 98.5 1.3E-06 2.8E-11 91.0 14.5 154 210-396 39-205 (229)
46 PF13401 AAA_22: AAA domain; P 98.5 2.3E-07 4.9E-12 88.0 7.1 118 210-329 4-125 (131)
47 KOG0532 Leucine-rich repeat (L 98.5 9.2E-09 2E-13 112.2 -3.9 177 591-813 94-271 (722)
48 PTZ00202 tuzin; Provisional 98.5 6.5E-06 1.4E-10 89.0 17.2 171 177-359 255-433 (550)
49 PRK05564 DNA polymerase III su 98.5 5.5E-06 1.2E-10 91.2 17.6 179 184-393 4-189 (313)
50 KOG3207 Beta-tubulin folding c 98.4 3E-08 6.6E-13 105.0 -0.8 85 592-676 118-208 (505)
51 KOG4341 F-box protein containi 98.4 4.3E-09 9.4E-14 110.6 -7.3 255 825-1096 138-415 (483)
52 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.7E-06 5.9E-11 89.3 13.2 171 189-397 22-204 (226)
53 PRK07003 DNA polymerase III su 98.4 1.8E-05 3.9E-10 92.3 20.5 197 183-396 15-223 (830)
54 PRK04195 replication factor C 98.4 3.5E-05 7.5E-10 90.1 23.2 248 183-472 13-271 (482)
55 KOG1259 Nischarin, modulator o 98.4 7.9E-08 1.7E-12 96.3 0.8 84 999-1093 326-410 (490)
56 PRK14961 DNA polymerase III su 98.4 1.4E-05 3.1E-10 89.6 18.4 195 183-391 15-217 (363)
57 KOG3207 Beta-tubulin folding c 98.4 1.3E-07 2.7E-12 100.4 1.5 130 559-695 142-277 (505)
58 PF14580 LRR_9: Leucine-rich r 98.4 1.6E-07 3.4E-12 91.4 2.0 85 593-681 17-103 (175)
59 cd00009 AAA The AAA+ (ATPases 98.3 3.7E-06 8E-11 81.8 11.7 125 187-331 1-131 (151)
60 PF13855 LRR_8: Leucine rich r 98.3 5.8E-07 1.2E-11 71.5 4.7 57 596-652 2-60 (61)
61 KOG1259 Nischarin, modulator o 98.3 7.9E-08 1.7E-12 96.3 -0.3 84 591-676 280-363 (490)
62 PF13191 AAA_16: AAA ATPase do 98.3 5.1E-07 1.1E-11 91.6 5.5 50 185-236 1-50 (185)
63 PRK12402 replication factor C 98.3 1.1E-05 2.4E-10 90.7 16.7 199 183-393 14-225 (337)
64 PRK14963 DNA polymerase III su 98.3 2.4E-06 5.1E-11 98.7 11.4 202 184-396 14-220 (504)
65 COG1474 CDC6 Cdc6-related prot 98.3 1.8E-05 3.9E-10 87.5 17.6 176 184-362 17-205 (366)
66 PF13173 AAA_14: AAA domain 98.3 2.9E-06 6.2E-11 79.6 9.1 118 211-351 3-126 (128)
67 PRK14949 DNA polymerase III su 98.3 1.9E-05 4.2E-10 94.0 17.9 197 183-392 15-218 (944)
68 PRK14960 DNA polymerase III su 98.3 1.7E-05 3.6E-10 91.6 16.6 193 183-392 14-217 (702)
69 PLN03150 hypothetical protein; 98.3 1.1E-06 2.3E-11 105.8 6.7 92 596-687 419-512 (623)
70 TIGR02903 spore_lon_C ATP-depe 98.3 1.8E-05 3.9E-10 94.3 16.6 203 184-397 154-398 (615)
71 KOG2120 SCF ubiquitin ligase, 98.2 3.8E-08 8.3E-13 98.7 -5.1 92 739-838 256-351 (419)
72 PRK14956 DNA polymerase III su 98.2 1.2E-05 2.6E-10 90.2 13.8 195 183-390 17-218 (484)
73 PRK06645 DNA polymerase III su 98.2 4E-05 8.7E-10 88.1 17.6 197 183-391 20-226 (507)
74 PRK12323 DNA polymerase III su 98.2 3.5E-05 7.6E-10 88.7 16.9 199 183-393 15-224 (700)
75 PRK00440 rfc replication facto 98.2 3.9E-05 8.5E-10 85.5 17.4 181 183-391 16-200 (319)
76 cd01128 rho_factor Transcripti 98.2 3E-06 6.5E-11 88.2 7.7 88 210-299 16-112 (249)
77 PF13855 LRR_8: Leucine rich r 98.2 1.7E-06 3.6E-11 68.8 4.4 58 618-676 1-60 (61)
78 PLN03025 replication factor C 98.2 4E-05 8.8E-10 84.5 16.9 181 183-389 12-195 (319)
79 PRK07471 DNA polymerase III su 98.2 7E-05 1.5E-09 83.0 18.2 196 183-395 18-239 (365)
80 PRK14957 DNA polymerase III su 98.2 5.5E-05 1.2E-09 87.6 17.5 189 183-398 15-225 (546)
81 PRK09112 DNA polymerase III su 98.1 6.6E-05 1.4E-09 82.7 17.1 199 182-395 21-241 (351)
82 PLN03150 hypothetical protein; 98.1 4E-06 8.7E-11 100.9 8.0 95 586-680 433-530 (623)
83 PRK13341 recombination factor 98.1 3E-05 6.5E-10 93.2 15.0 174 183-389 27-212 (725)
84 PRK15386 type III secretion pr 98.1 1.7E-05 3.7E-10 86.8 11.7 132 882-1040 51-185 (426)
85 PRK07940 DNA polymerase III su 98.1 6.7E-05 1.5E-09 83.9 16.7 179 184-394 5-213 (394)
86 PRK08727 hypothetical protein; 98.1 5.2E-05 1.1E-09 79.2 15.0 148 211-391 42-201 (233)
87 PRK08691 DNA polymerase III su 98.1 2.4E-05 5.2E-10 91.3 13.1 197 183-392 15-218 (709)
88 COG2255 RuvB Holliday junction 98.1 7.4E-05 1.6E-09 75.6 14.5 179 183-395 25-224 (332)
89 PRK14962 DNA polymerase III su 98.1 9.3E-05 2E-09 84.9 17.0 189 183-398 13-223 (472)
90 PRK07994 DNA polymerase III su 98.1 8.6E-05 1.9E-09 87.3 16.9 194 183-393 15-219 (647)
91 TIGR02397 dnaX_nterm DNA polym 98.1 0.00015 3.2E-09 82.2 18.6 184 183-394 13-218 (355)
92 KOG2028 ATPase related to the 98.1 3.9E-05 8.4E-10 79.7 12.1 158 209-389 161-331 (554)
93 PRK09087 hypothetical protein; 98.1 0.0001 2.2E-09 76.3 15.5 143 210-395 44-196 (226)
94 TIGR00678 holB DNA polymerase 98.1 0.00014 3.1E-09 73.5 16.4 91 289-390 95-187 (188)
95 COG4886 Leucine-rich repeat (L 98.1 2.8E-06 6E-11 97.8 4.3 124 561-695 114-238 (394)
96 PRK05896 DNA polymerase III su 98.1 6.2E-05 1.3E-09 87.1 15.1 197 183-396 15-223 (605)
97 TIGR01242 26Sp45 26S proteasom 98.1 7.2E-05 1.6E-09 84.3 15.5 179 182-388 120-328 (364)
98 PRK08084 DNA replication initi 98.0 0.00012 2.6E-09 76.6 15.6 153 211-396 46-211 (235)
99 PRK08903 DnaA regulatory inact 98.0 7.6E-05 1.7E-09 78.2 14.2 172 187-398 22-203 (227)
100 PF12799 LRR_4: Leucine Rich r 98.0 5.3E-06 1.2E-10 60.0 3.7 38 596-633 2-39 (44)
101 PRK14958 DNA polymerase III su 98.0 0.00012 2.7E-09 84.9 16.9 183 183-391 15-217 (509)
102 PRK14964 DNA polymerase III su 98.0 0.00011 2.4E-09 83.8 16.1 183 183-391 12-214 (491)
103 PRK09376 rho transcription ter 98.0 1.2E-05 2.7E-10 86.8 7.4 99 195-299 158-265 (416)
104 PF05621 TniB: Bacterial TniB 98.0 0.00022 4.8E-09 74.6 16.3 197 191-391 44-258 (302)
105 PRK14951 DNA polymerase III su 98.0 0.00016 3.5E-09 84.9 17.0 197 183-392 15-223 (618)
106 PRK14969 DNA polymerase III su 98.0 0.00019 4.2E-09 84.0 17.6 183 183-395 15-222 (527)
107 PRK14955 DNA polymerase III su 98.0 0.00012 2.6E-09 83.2 15.3 202 183-395 15-230 (397)
108 PRK09111 DNA polymerase III su 98.0 0.00019 4.1E-09 84.6 16.9 198 183-393 23-232 (598)
109 PRK05642 DNA replication initi 97.9 0.0002 4.4E-09 74.8 14.8 155 211-398 46-212 (234)
110 PRK14950 DNA polymerase III su 97.9 0.00019 4E-09 85.7 16.1 196 183-394 15-221 (585)
111 KOG1909 Ran GTPase-activating 97.9 5.5E-07 1.2E-11 93.2 -4.5 90 587-676 22-131 (382)
112 PRK14959 DNA polymerase III su 97.9 0.00028 6.1E-09 82.2 16.7 199 183-398 15-225 (624)
113 PRK14087 dnaA chromosomal repl 97.9 0.00018 3.9E-09 82.5 15.0 169 210-396 141-321 (450)
114 PHA02544 44 clamp loader, smal 97.9 0.00014 3E-09 80.7 13.4 149 183-358 20-171 (316)
115 TIGR00767 rho transcription te 97.9 3.6E-05 7.8E-10 83.8 8.0 88 210-299 168-264 (415)
116 KOG2120 SCF ubiquitin ligase, 97.9 4.6E-07 1E-11 91.1 -5.8 176 905-1092 185-373 (419)
117 PRK14970 DNA polymerase III su 97.9 0.00051 1.1E-08 77.8 17.9 187 183-395 16-211 (367)
118 PF00308 Bac_DnaA: Bacterial d 97.8 0.00018 4E-09 74.1 12.7 185 186-394 11-208 (219)
119 PRK07133 DNA polymerase III su 97.8 0.00054 1.2E-08 81.2 17.6 196 183-395 17-221 (725)
120 PRK08451 DNA polymerase III su 97.8 0.00094 2E-08 77.1 18.7 181 183-394 13-218 (535)
121 PRK07764 DNA polymerase III su 97.8 0.00049 1.1E-08 84.0 17.3 192 183-391 14-218 (824)
122 KOG1909 Ran GTPase-activating 97.8 2.7E-06 5.8E-11 88.2 -1.8 116 557-676 24-168 (382)
123 PF12799 LRR_4: Leucine Rich r 97.8 2.7E-05 5.9E-10 56.3 3.9 40 618-658 1-40 (44)
124 PRK15386 type III secretion pr 97.8 2.6E-05 5.6E-10 85.4 5.5 121 944-1092 48-187 (426)
125 PRK11331 5-methylcytosine-spec 97.8 0.00017 3.7E-09 80.1 11.7 110 183-304 174-286 (459)
126 PRK14954 DNA polymerase III su 97.8 0.00064 1.4E-08 80.3 17.0 203 183-395 15-230 (620)
127 PRK14952 DNA polymerase III su 97.8 0.00088 1.9E-08 78.6 18.0 199 183-398 12-224 (584)
128 KOG0989 Replication factor C, 97.8 0.00025 5.5E-09 72.8 11.7 191 182-394 34-231 (346)
129 PRK03992 proteasome-activating 97.8 0.00029 6.3E-09 79.6 13.7 177 183-387 130-336 (389)
130 PRK06305 DNA polymerase III su 97.8 0.00082 1.8E-08 77.2 17.5 185 183-395 16-224 (451)
131 KOG0531 Protein phosphatase 1, 97.8 5E-06 1.1E-10 95.6 -0.6 83 591-676 91-173 (414)
132 PRK14953 DNA polymerase III su 97.7 0.0013 2.8E-08 76.1 18.7 183 184-393 16-219 (486)
133 PF14516 AAA_35: AAA-like doma 97.7 0.0052 1.1E-07 67.9 22.8 200 184-401 11-246 (331)
134 KOG2227 Pre-initiation complex 97.7 0.00048 1.1E-08 74.8 13.8 215 182-398 148-376 (529)
135 PRK14971 DNA polymerase III su 97.7 0.0011 2.4E-08 78.9 18.1 182 183-391 16-219 (614)
136 KOG0531 Protein phosphatase 1, 97.7 8.5E-06 1.8E-10 93.7 0.2 81 592-675 115-196 (414)
137 KOG2543 Origin recognition com 97.7 0.0013 2.7E-08 69.8 15.6 169 183-359 5-192 (438)
138 PRK14948 DNA polymerase III su 97.7 0.0014 3.1E-08 77.9 18.3 195 184-393 16-221 (620)
139 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00044 9.5E-09 85.7 13.7 183 184-387 187-389 (852)
140 PRK06620 hypothetical protein; 97.6 0.0016 3.5E-08 66.7 15.6 135 211-392 45-187 (214)
141 TIGR02639 ClpA ATP-dependent C 97.6 0.00051 1.1E-08 84.6 13.7 157 184-360 182-358 (731)
142 PRK06647 DNA polymerase III su 97.6 0.0028 6E-08 74.6 18.2 192 183-391 15-217 (563)
143 COG3267 ExeA Type II secretory 97.5 0.005 1.1E-07 62.1 17.0 180 210-396 51-247 (269)
144 TIGR00362 DnaA chromosomal rep 97.5 0.0023 5E-08 73.4 16.7 161 210-392 136-308 (405)
145 PRK05707 DNA polymerase III su 97.5 0.0028 6E-08 69.4 16.3 97 289-394 105-203 (328)
146 TIGR00602 rad24 checkpoint pro 97.5 0.00076 1.7E-08 79.5 12.6 54 181-234 81-134 (637)
147 CHL00095 clpC Clp protease ATP 97.5 0.00057 1.2E-08 85.2 12.3 157 184-359 179-353 (821)
148 PRK14965 DNA polymerase III su 97.5 0.0023 4.9E-08 76.1 16.6 198 183-397 15-224 (576)
149 KOG2982 Uncharacterized conser 97.5 6E-05 1.3E-09 76.3 2.8 77 597-676 47-132 (418)
150 KOG2982 Uncharacterized conser 97.5 3.1E-05 6.8E-10 78.3 0.6 85 592-676 68-157 (418)
151 PRK14088 dnaA chromosomal repl 97.5 0.0014 2.9E-08 75.3 13.7 160 210-391 130-302 (440)
152 PRK07399 DNA polymerase III su 97.5 0.0025 5.4E-08 69.4 15.0 196 184-394 4-221 (314)
153 PF00004 AAA: ATPase family as 97.4 0.00043 9.2E-09 65.5 8.0 23 213-235 1-23 (132)
154 KOG4579 Leucine-rich repeat (L 97.4 3.2E-05 6.9E-10 69.1 -0.6 92 591-684 49-141 (177)
155 KOG4579 Leucine-rich repeat (L 97.4 1.6E-05 3.5E-10 70.9 -2.5 99 595-695 27-129 (177)
156 CHL00181 cbbX CbbX; Provisiona 97.4 0.0064 1.4E-07 65.4 16.5 134 211-361 60-210 (287)
157 KOG3665 ZYG-1-like serine/thre 97.3 0.00016 3.6E-09 86.6 4.7 109 559-676 144-261 (699)
158 PRK11034 clpA ATP-dependent Cl 97.3 0.00083 1.8E-08 81.5 10.5 158 184-360 186-362 (758)
159 TIGR02881 spore_V_K stage V sp 97.3 0.0019 4.2E-08 69.0 12.2 158 185-361 7-192 (261)
160 PRK05563 DNA polymerase III su 97.3 0.0084 1.8E-07 71.0 18.6 192 183-391 15-217 (559)
161 TIGR02880 cbbX_cfxQ probable R 97.3 0.0016 3.5E-08 70.1 11.6 133 212-361 60-209 (284)
162 PTZ00454 26S protease regulato 97.3 0.0048 1E-07 69.4 15.7 179 183-388 144-351 (398)
163 PRK00149 dnaA chromosomal repl 97.3 0.0038 8.2E-08 72.6 15.4 160 210-391 148-319 (450)
164 PF05673 DUF815: Protein of un 97.3 0.0042 9E-08 63.1 13.2 123 180-332 23-153 (249)
165 PRK12422 chromosomal replicati 97.3 0.004 8.7E-08 71.3 14.8 154 210-387 141-306 (445)
166 PRK10536 hypothetical protein; 97.2 0.0054 1.2E-07 63.1 13.7 137 183-331 54-214 (262)
167 PRK08116 hypothetical protein; 97.2 0.0014 2.9E-08 69.9 9.6 103 211-329 115-220 (268)
168 smart00382 AAA ATPases associa 97.2 0.0024 5.1E-08 61.3 10.6 88 211-303 3-91 (148)
169 PTZ00361 26 proteosome regulat 97.2 0.0021 4.5E-08 72.7 11.4 158 184-362 183-369 (438)
170 COG0542 clpA ATP-binding subun 97.2 0.0054 1.2E-07 72.9 14.9 136 183-328 490-642 (786)
171 PRK10787 DNA-binding ATP-depen 97.2 0.0042 9.2E-08 76.2 14.6 52 183-234 321-373 (784)
172 PRK06871 DNA polymerase III su 97.2 0.018 3.8E-07 62.6 17.8 176 193-391 11-200 (325)
173 PRK14086 dnaA chromosomal repl 97.2 0.0058 1.2E-07 71.2 14.6 159 211-391 315-485 (617)
174 PRK08769 DNA polymerase III su 97.2 0.019 4E-07 62.4 17.5 96 289-395 112-209 (319)
175 KOG2004 Mitochondrial ATP-depe 97.1 0.018 3.8E-07 66.3 17.5 70 183-258 410-480 (906)
176 PRK06090 DNA polymerase III su 97.1 0.019 4.2E-07 62.2 17.4 177 192-394 11-201 (319)
177 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0037 8E-08 78.4 13.4 158 184-360 173-349 (852)
178 PRK08118 topology modulation p 97.1 0.00024 5.3E-09 69.7 2.4 35 212-246 3-37 (167)
179 COG1222 RPT1 ATP-dependent 26S 97.1 0.013 2.8E-07 61.9 14.8 188 183-398 150-371 (406)
180 TIGR03689 pup_AAA proteasome A 97.1 0.0075 1.6E-07 69.4 14.4 168 184-361 182-379 (512)
181 KOG3665 ZYG-1-like serine/thre 97.0 0.00024 5.2E-09 85.3 1.7 76 618-695 122-201 (699)
182 COG5238 RNA1 Ran GTPase-activa 97.0 0.00011 2.5E-09 73.4 -1.1 84 593-676 28-131 (388)
183 PRK10865 protein disaggregatio 97.0 0.0024 5.1E-08 79.6 10.1 46 184-234 178-223 (857)
184 TIGR01241 FtsH_fam ATP-depende 97.0 0.012 2.6E-07 69.3 15.5 178 183-387 54-259 (495)
185 COG0466 Lon ATP-dependent Lon 97.0 0.0071 1.5E-07 69.8 12.5 165 183-360 322-508 (782)
186 PRK08058 DNA polymerase III su 97.0 0.024 5.2E-07 62.7 16.4 163 185-359 6-181 (329)
187 PRK07261 topology modulation p 96.9 0.0018 4E-08 63.9 6.9 66 212-300 2-67 (171)
188 TIGR02640 gas_vesic_GvpN gas v 96.9 0.018 3.8E-07 61.5 14.8 54 192-258 10-63 (262)
189 CHL00176 ftsH cell division pr 96.9 0.012 2.6E-07 70.3 14.7 177 183-386 182-386 (638)
190 COG0593 DnaA ATPase involved i 96.9 0.014 3.1E-07 64.5 14.1 159 183-362 87-259 (408)
191 PRK07993 DNA polymerase III su 96.9 0.032 6.9E-07 61.4 16.8 178 192-392 10-202 (334)
192 PF04665 Pox_A32: Poxvirus A32 96.9 0.0019 4.1E-08 66.1 6.4 36 211-249 14-49 (241)
193 PF13177 DNA_pol3_delta2: DNA 96.9 0.013 2.9E-07 57.1 11.9 120 188-331 1-143 (162)
194 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0059 1.3E-07 76.6 11.3 137 184-329 565-717 (852)
195 KOG1859 Leucine-rich repeat pr 96.8 6.6E-05 1.4E-09 85.1 -5.2 86 588-676 180-265 (1096)
196 PRK13531 regulatory ATPase Rav 96.8 0.014 3E-07 65.9 12.7 151 185-359 21-193 (498)
197 PRK08181 transposase; Validate 96.8 0.0036 7.8E-08 66.1 7.6 100 211-329 107-208 (269)
198 TIGR00763 lon ATP-dependent pr 96.8 0.017 3.8E-07 71.7 14.7 52 184-235 320-372 (775)
199 PF01695 IstB_IS21: IstB-like 96.8 0.0022 4.8E-08 63.6 5.6 99 211-329 48-149 (178)
200 TIGR02639 ClpA ATP-dependent C 96.7 0.0067 1.5E-07 74.9 11.0 121 184-316 454-579 (731)
201 TIGR03345 VI_ClpV1 type VI sec 96.7 0.005 1.1E-07 76.5 9.6 136 184-329 566-718 (852)
202 PRK10865 protein disaggregatio 96.7 0.0072 1.6E-07 75.4 10.8 137 184-329 568-720 (857)
203 PRK12608 transcription termina 96.7 0.0076 1.6E-07 65.7 9.3 101 193-299 120-229 (380)
204 KOG0733 Nuclear AAA ATPase (VC 96.6 0.036 7.9E-07 62.6 14.4 98 182-300 188-292 (802)
205 PRK06964 DNA polymerase III su 96.6 0.056 1.2E-06 59.3 15.9 93 289-394 131-225 (342)
206 PRK12377 putative replication 96.6 0.0051 1.1E-07 64.1 7.5 101 211-329 102-205 (248)
207 COG2884 FtsE Predicted ATPase 96.6 0.025 5.5E-07 54.3 11.0 124 210-337 28-204 (223)
208 PRK06921 hypothetical protein; 96.6 0.011 2.4E-07 62.8 9.9 100 210-329 117-224 (266)
209 PRK06526 transposase; Provisio 96.6 0.004 8.8E-08 65.5 6.4 99 211-329 99-200 (254)
210 PRK08939 primosomal protein Dn 96.6 0.01 2.3E-07 64.3 9.6 122 188-329 135-260 (306)
211 PRK09183 transposase/IS protei 96.6 0.0081 1.8E-07 63.7 8.6 100 211-329 103-205 (259)
212 KOG1859 Leucine-rich repeat pr 96.6 0.0003 6.6E-09 79.9 -2.2 106 558-676 182-290 (1096)
213 PRK11889 flhF flagellar biosyn 96.5 0.022 4.7E-07 62.4 11.1 104 209-315 240-347 (436)
214 PF10443 RNA12: RNA12 protein; 96.5 0.19 4.1E-06 55.7 18.3 204 189-404 1-288 (431)
215 PRK07952 DNA replication prote 96.5 0.0086 1.9E-07 62.3 7.9 102 211-329 100-204 (244)
216 PRK05541 adenylylsulfate kinas 96.4 0.01 2.2E-07 59.2 8.1 27 209-235 6-32 (176)
217 PRK11034 clpA ATP-dependent Cl 96.4 0.011 2.3E-07 72.0 9.7 121 184-316 458-583 (758)
218 CHL00095 clpC Clp protease ATP 96.4 0.012 2.6E-07 73.6 10.3 137 184-329 509-661 (821)
219 CHL00195 ycf46 Ycf46; Provisio 96.4 0.033 7.2E-07 64.3 13.0 180 184-388 228-429 (489)
220 COG2607 Predicted ATPase (AAA+ 96.4 0.036 7.9E-07 55.3 11.1 106 181-316 57-166 (287)
221 PRK08699 DNA polymerase III su 96.4 0.046 1E-06 59.9 13.4 71 289-359 112-184 (325)
222 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0029 6.3E-08 68.6 3.8 52 184-235 51-103 (361)
223 KOG1644 U2-associated snRNP A' 96.3 0.0048 1E-07 59.7 4.7 97 596-695 43-146 (233)
224 TIGR01243 CDC48 AAA family ATP 96.3 0.037 7.9E-07 68.7 13.9 180 183-389 177-382 (733)
225 PRK04296 thymidine kinase; Pro 96.3 0.0089 1.9E-07 60.2 7.1 113 211-331 3-117 (190)
226 KOG1947 Leucine rich repeat pr 96.3 0.00032 6.8E-09 83.6 -4.5 131 822-956 185-329 (482)
227 PF02562 PhoH: PhoH-like prote 96.3 0.012 2.7E-07 58.8 7.5 131 188-330 4-156 (205)
228 TIGR02237 recomb_radB DNA repa 96.3 0.012 2.7E-07 60.6 7.9 48 209-260 11-58 (209)
229 PRK06835 DNA replication prote 96.2 0.0081 1.8E-07 65.6 6.5 102 211-329 184-288 (329)
230 PF07728 AAA_5: AAA domain (dy 96.2 0.0022 4.9E-08 61.1 1.9 88 213-314 2-89 (139)
231 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.022 4.9E-07 54.5 8.5 116 211-330 3-138 (159)
232 COG1373 Predicted ATPase (AAA+ 96.2 0.17 3.7E-06 57.4 17.1 117 212-354 39-161 (398)
233 PRK05800 cobU adenosylcobinami 96.2 0.041 9E-07 54.0 10.6 80 212-299 3-85 (170)
234 PRK04132 replication factor C 96.2 0.11 2.4E-06 63.6 16.2 154 218-392 574-729 (846)
235 COG1484 DnaC DNA replication p 96.2 0.013 2.9E-07 61.6 7.5 81 210-308 105-185 (254)
236 cd01120 RecA-like_NTPases RecA 96.1 0.023 5.1E-07 55.9 9.0 40 212-254 1-40 (165)
237 KOG2739 Leucine-rich acidic nu 96.1 0.0026 5.7E-08 64.3 1.9 82 593-676 41-127 (260)
238 PRK09361 radB DNA repair and r 96.1 0.015 3.2E-07 60.8 7.7 45 210-258 23-67 (225)
239 PF13207 AAA_17: AAA domain; P 96.1 0.0039 8.5E-08 57.8 2.9 22 212-233 1-22 (121)
240 COG0470 HolB ATPase involved i 96.1 0.035 7.5E-07 62.0 11.1 143 185-346 2-167 (325)
241 TIGR02902 spore_lonB ATP-depen 96.1 0.043 9.3E-07 64.8 12.1 45 184-233 65-109 (531)
242 TIGR01243 CDC48 AAA family ATP 96.1 0.074 1.6E-06 66.1 14.7 178 184-388 453-657 (733)
243 KOG1514 Origin recognition com 96.0 0.2 4.3E-06 58.2 16.3 201 183-395 395-622 (767)
244 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.064 1.4E-06 51.3 10.9 103 211-333 27-130 (144)
245 KOG1947 Leucine rich repeat pr 96.0 0.0003 6.4E-09 83.8 -6.6 60 776-837 187-255 (482)
246 cd00544 CobU Adenosylcobinamid 96.0 0.086 1.9E-06 51.6 11.8 37 213-255 2-38 (169)
247 KOG0991 Replication factor C, 96.0 0.057 1.2E-06 53.4 10.1 47 183-234 26-72 (333)
248 cd03214 ABC_Iron-Siderophores_ 96.0 0.084 1.8E-06 52.8 12.0 118 211-333 26-161 (180)
249 KOG0734 AAA+-type ATPase conta 96.0 0.024 5.1E-07 62.9 8.3 54 183-236 303-363 (752)
250 PLN00020 ribulose bisphosphate 96.0 0.19 4E-06 54.5 14.8 29 208-236 146-174 (413)
251 KOG1969 DNA replication checkp 96.0 0.024 5.1E-07 65.5 8.6 85 209-314 325-411 (877)
252 KOG2123 Uncharacterized conser 96.0 0.00073 1.6E-08 68.1 -2.8 103 594-699 18-127 (388)
253 PF00448 SRP54: SRP54-type pro 95.9 0.019 4.1E-07 57.8 7.2 57 210-269 1-58 (196)
254 KOG2228 Origin recognition com 95.9 0.059 1.3E-06 56.6 10.6 173 184-360 24-219 (408)
255 COG1223 Predicted ATPase (AAA+ 95.9 0.15 3.2E-06 51.5 12.9 157 183-361 120-298 (368)
256 cd03247 ABCC_cytochrome_bd The 95.9 0.081 1.8E-06 52.8 11.5 117 211-334 29-161 (178)
257 KOG2035 Replication factor C, 95.9 0.069 1.5E-06 54.4 10.6 228 186-435 15-282 (351)
258 PF00560 LRR_1: Leucine Rich R 95.9 0.0038 8.1E-08 37.4 1.1 18 620-637 2-19 (22)
259 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.037 8E-07 58.3 9.5 90 209-299 18-124 (235)
260 cd01394 radB RadB. The archaea 95.9 0.022 4.8E-07 59.2 7.7 43 209-254 18-60 (218)
261 KOG1644 U2-associated snRNP A' 95.9 0.012 2.6E-07 57.0 5.0 92 769-864 56-149 (233)
262 COG2812 DnaX DNA polymerase II 95.9 0.038 8.2E-07 63.3 9.8 187 184-388 16-214 (515)
263 KOG3864 Uncharacterized conser 95.9 0.00071 1.5E-08 65.3 -3.2 87 1004-1097 103-191 (221)
264 COG1136 SalX ABC-type antimicr 95.8 0.1 2.2E-06 52.9 11.8 60 278-337 148-210 (226)
265 PF07693 KAP_NTPase: KAP famil 95.8 0.13 2.7E-06 57.5 14.0 45 191-237 3-47 (325)
266 TIGR03499 FlhF flagellar biosy 95.8 0.025 5.4E-07 60.9 7.9 88 209-299 193-281 (282)
267 PRK00771 signal recognition pa 95.8 0.068 1.5E-06 60.7 11.6 87 209-299 94-184 (437)
268 cd03222 ABC_RNaseL_inhibitor T 95.8 0.078 1.7E-06 52.4 10.7 106 211-334 26-136 (177)
269 KOG0741 AAA+-type ATPase [Post 95.8 0.065 1.4E-06 59.5 10.7 130 208-359 536-685 (744)
270 cd03238 ABC_UvrA The excision 95.8 0.07 1.5E-06 52.7 10.3 114 211-334 22-153 (176)
271 cd01393 recA_like RecA is a b 95.8 0.031 6.8E-07 58.4 8.4 90 209-299 18-123 (226)
272 COG1875 NYN ribonuclease and A 95.8 0.034 7.3E-07 59.1 8.0 41 185-230 225-265 (436)
273 PF08423 Rad51: Rad51; InterP 95.7 0.026 5.6E-07 59.7 7.4 57 210-267 38-97 (256)
274 PF14532 Sigma54_activ_2: Sigm 95.7 0.01 2.2E-07 56.4 4.0 108 187-329 1-109 (138)
275 COG0542 clpA ATP-binding subun 95.7 0.054 1.2E-06 64.7 10.4 157 184-360 170-346 (786)
276 cd03228 ABCC_MRP_Like The MRP 95.7 0.086 1.9E-06 52.2 10.5 117 211-335 29-160 (171)
277 PTZ00494 tuzin-like protein; P 95.7 0.29 6.4E-06 53.7 14.8 169 178-359 365-543 (664)
278 cd03223 ABCD_peroxisomal_ALDP 95.7 0.16 3.4E-06 50.0 12.2 117 211-333 28-151 (166)
279 KOG0744 AAA+-type ATPase [Post 95.7 0.03 6.4E-07 58.2 7.1 80 210-299 177-259 (423)
280 KOG0731 AAA+-type ATPase conta 95.6 0.22 4.9E-06 59.2 15.1 181 183-390 310-520 (774)
281 PRK06696 uridine kinase; Valid 95.6 0.013 2.8E-07 60.9 4.7 45 188-234 2-46 (223)
282 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.1 2.2E-06 53.9 10.8 120 211-332 31-201 (254)
283 PRK12723 flagellar biosynthesi 95.6 0.079 1.7E-06 59.2 11.0 104 210-316 174-282 (388)
284 PRK13695 putative NTPase; Prov 95.6 0.011 2.3E-07 59.0 3.6 23 212-234 2-24 (174)
285 PF13604 AAA_30: AAA domain; P 95.6 0.012 2.7E-07 59.5 4.1 106 211-329 19-130 (196)
286 PHA02244 ATPase-like protein 95.6 0.15 3.1E-06 55.8 12.3 23 212-234 121-143 (383)
287 cd03216 ABC_Carb_Monos_I This 95.6 0.059 1.3E-06 52.8 8.8 115 211-333 27-145 (163)
288 cd00983 recA RecA is a bacter 95.6 0.021 4.6E-07 61.7 6.0 83 209-299 54-142 (325)
289 PRK12724 flagellar biosynthesi 95.5 0.07 1.5E-06 59.4 10.1 25 210-234 223-247 (432)
290 TIGR02238 recomb_DMC1 meiotic 95.5 0.039 8.5E-07 60.0 8.1 59 209-268 95-156 (313)
291 COG1126 GlnQ ABC-type polar am 95.5 0.22 4.8E-06 49.3 12.1 123 210-336 28-202 (240)
292 COG4608 AppF ABC-type oligopep 95.5 0.13 2.8E-06 53.2 10.9 128 210-338 39-178 (268)
293 PRK08233 hypothetical protein; 95.4 0.043 9.4E-07 55.1 7.6 25 210-234 3-27 (182)
294 cd01133 F1-ATPase_beta F1 ATP 95.4 0.047 1E-06 57.4 7.8 87 211-299 70-172 (274)
295 cd01131 PilT Pilus retraction 95.4 0.026 5.7E-07 57.3 5.9 110 211-333 2-112 (198)
296 PF13671 AAA_33: AAA domain; P 95.4 0.044 9.5E-07 52.5 7.1 22 212-233 1-22 (143)
297 PF00560 LRR_1: Leucine Rich R 95.4 0.0086 1.9E-07 35.8 1.3 22 596-617 1-22 (22)
298 PTZ00088 adenylate kinase 1; P 95.3 0.018 3.9E-07 59.5 4.5 22 213-234 9-30 (229)
299 TIGR02012 tigrfam_recA protein 95.3 0.032 7E-07 60.3 6.5 83 209-299 54-142 (321)
300 KOG2739 Leucine-rich acidic nu 95.3 0.007 1.5E-07 61.3 1.4 61 615-676 40-102 (260)
301 PRK14722 flhF flagellar biosyn 95.3 0.099 2.1E-06 57.8 10.3 89 210-301 137-226 (374)
302 KOG2123 Uncharacterized conser 95.3 0.0023 4.9E-08 64.7 -2.2 81 590-671 36-123 (388)
303 PRK06067 flagellar accessory p 95.3 0.087 1.9E-06 55.4 9.5 86 209-300 24-130 (234)
304 KOG0730 AAA+-type ATPase [Post 95.3 0.43 9.4E-06 55.1 15.2 52 184-235 434-493 (693)
305 COG0563 Adk Adenylate kinase a 95.2 0.072 1.6E-06 52.6 8.0 24 212-235 2-25 (178)
306 TIGR01360 aden_kin_iso1 adenyl 95.2 0.041 8.8E-07 55.7 6.6 24 210-233 3-26 (188)
307 COG1618 Predicted nucleotide k 95.2 0.016 3.5E-07 54.0 3.1 27 211-237 6-32 (179)
308 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.073 1.6E-06 53.5 8.3 23 212-234 1-23 (183)
309 PRK14974 cell division protein 95.1 0.13 2.9E-06 56.2 10.6 100 209-312 139-246 (336)
310 cd03230 ABC_DR_subfamily_A Thi 95.1 0.18 4E-06 50.0 10.9 117 211-334 27-159 (173)
311 COG0572 Udk Uridine kinase [Nu 95.1 0.034 7.3E-07 55.7 5.3 28 208-235 6-33 (218)
312 cd03246 ABCC_Protease_Secretio 95.1 0.15 3.3E-06 50.5 10.2 116 211-334 29-160 (173)
313 PRK12726 flagellar biosynthesi 95.1 0.17 3.8E-06 55.3 11.0 90 209-301 205-296 (407)
314 TIGR00708 cobA cob(I)alamin ad 95.1 0.11 2.5E-06 50.3 8.7 119 210-330 5-140 (173)
315 COG0468 RecA RecA/RadA recombi 95.1 0.09 2E-06 55.5 8.6 88 208-299 58-150 (279)
316 cd02025 PanK Pantothenate kina 95.0 0.066 1.4E-06 55.3 7.5 23 212-234 1-23 (220)
317 PRK09354 recA recombinase A; P 95.0 0.047 1E-06 59.6 6.7 83 209-299 59-147 (349)
318 cd01122 GP4d_helicase GP4d_hel 95.0 0.22 4.7E-06 53.8 12.0 52 210-265 30-81 (271)
319 PRK05703 flhF flagellar biosyn 95.0 0.12 2.6E-06 59.0 10.2 87 210-300 221-309 (424)
320 PLN03187 meiotic recombination 95.0 0.082 1.8E-06 58.0 8.5 59 209-268 125-186 (344)
321 PF00158 Sigma54_activat: Sigm 95.0 0.089 1.9E-06 51.5 8.0 130 186-329 1-143 (168)
322 COG0464 SpoVK ATPases of the A 95.0 0.28 6.1E-06 58.1 13.8 157 185-362 243-425 (494)
323 PRK07132 DNA polymerase III su 95.0 1.4 2.9E-05 47.7 17.5 156 210-393 18-184 (299)
324 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.16 3.4E-06 51.8 10.2 119 211-334 27-168 (200)
325 cd01125 repA Hexameric Replica 95.0 0.19 4E-06 53.0 11.0 119 212-330 3-159 (239)
326 COG1102 Cmk Cytidylate kinase 95.0 0.043 9.3E-07 51.3 5.2 44 212-269 2-45 (179)
327 PRK00889 adenylylsulfate kinas 95.0 0.1 2.2E-06 52.0 8.5 25 210-234 4-28 (175)
328 TIGR00064 ftsY signal recognit 95.0 0.15 3.3E-06 54.4 10.2 89 208-300 70-164 (272)
329 cd03115 SRP The signal recogni 95.0 0.12 2.5E-06 51.4 8.9 23 212-234 2-24 (173)
330 PRK15455 PrkA family serine pr 94.9 0.025 5.5E-07 64.7 4.2 51 185-235 77-128 (644)
331 PLN03186 DNA repair protein RA 94.9 0.084 1.8E-06 58.0 8.1 59 209-268 122-183 (342)
332 COG1124 DppF ABC-type dipeptid 94.8 0.32 6.9E-06 49.3 11.2 56 282-337 151-209 (252)
333 PRK07667 uridine kinase; Provi 94.8 0.036 7.7E-07 56.1 4.9 39 193-234 3-41 (193)
334 PTZ00301 uridine kinase; Provi 94.8 0.038 8.2E-07 56.3 5.0 25 210-234 3-27 (210)
335 PRK00625 shikimate kinase; Pro 94.8 0.12 2.6E-06 50.8 8.4 23 212-234 2-24 (173)
336 PRK10867 signal recognition pa 94.8 0.11 2.3E-06 59.0 8.9 26 209-234 99-124 (433)
337 TIGR02858 spore_III_AA stage I 94.8 0.18 3.9E-06 53.5 10.2 124 192-333 97-232 (270)
338 PRK12727 flagellar biosynthesi 94.8 0.068 1.5E-06 61.1 7.2 88 210-300 350-438 (559)
339 PRK05439 pantothenate kinase; 94.7 0.12 2.7E-06 55.6 8.9 27 208-234 84-110 (311)
340 PF00006 ATP-synt_ab: ATP synt 94.7 0.097 2.1E-06 53.3 7.6 84 211-299 16-114 (215)
341 PRK09270 nucleoside triphospha 94.7 0.097 2.1E-06 54.7 7.9 28 208-235 31-58 (229)
342 cd02027 APSK Adenosine 5'-phos 94.7 0.18 3.8E-06 48.5 9.1 23 212-234 1-23 (149)
343 TIGR02239 recomb_RAD51 DNA rep 94.7 0.11 2.3E-06 56.9 8.3 59 209-268 95-156 (316)
344 TIGR00959 ffh signal recogniti 94.7 0.3 6.4E-06 55.5 12.1 26 209-234 98-123 (428)
345 KOG1532 GTPase XAB1, interacts 94.7 0.14 3E-06 52.1 8.2 87 207-294 16-120 (366)
346 PRK10733 hflB ATP-dependent me 94.6 0.26 5.6E-06 59.9 12.3 158 184-362 152-337 (644)
347 cd03229 ABC_Class3 This class 94.6 0.14 3.1E-06 51.1 8.6 24 211-234 27-50 (178)
348 TIGR02236 recomb_radA DNA repa 94.6 0.15 3.2E-06 56.2 9.5 57 210-267 95-154 (310)
349 TIGR01817 nifA Nif-specific re 94.6 0.24 5.3E-06 59.1 12.0 136 182-329 194-340 (534)
350 PRK13539 cytochrome c biogenes 94.6 0.3 6.5E-06 50.2 11.2 62 283-347 138-201 (207)
351 cd01124 KaiC KaiC is a circadi 94.6 0.11 2.3E-06 52.5 7.8 38 212-252 1-38 (187)
352 PF00485 PRK: Phosphoribulokin 94.6 0.024 5.2E-07 57.6 2.9 24 212-235 1-24 (194)
353 KOG0735 AAA+-type ATPase [Post 94.6 0.074 1.6E-06 61.3 6.8 71 210-299 431-503 (952)
354 TIGR00390 hslU ATP-dependent p 94.6 0.077 1.7E-06 58.8 6.8 82 184-265 12-103 (441)
355 cd02019 NK Nucleoside/nucleoti 94.6 0.025 5.5E-07 45.9 2.4 22 212-233 1-22 (69)
356 PF13238 AAA_18: AAA domain; P 94.5 0.025 5.3E-07 53.0 2.7 21 213-233 1-21 (129)
357 COG0714 MoxR-like ATPases [Gen 94.5 0.13 2.9E-06 57.1 8.8 108 185-315 25-137 (329)
358 PF01583 APS_kinase: Adenylyls 94.5 0.032 6.9E-07 53.2 3.3 27 210-236 2-28 (156)
359 KOG1051 Chaperone HSP104 and r 94.5 0.2 4.2E-06 61.1 10.6 119 184-315 562-685 (898)
360 PRK00279 adk adenylate kinase; 94.5 0.094 2E-06 54.2 7.1 23 212-234 2-24 (215)
361 PRK08533 flagellar accessory p 94.5 0.26 5.7E-06 51.3 10.4 48 210-262 24-71 (230)
362 PRK05201 hslU ATP-dependent pr 94.5 0.069 1.5E-06 59.2 6.2 84 183-266 14-107 (443)
363 PF12775 AAA_7: P-loop contain 94.5 0.046 1E-06 58.3 4.8 90 194-302 23-112 (272)
364 PF13306 LRR_5: Leucine rich r 94.4 0.12 2.7E-06 48.3 7.2 58 1027-1090 53-111 (129)
365 PF07724 AAA_2: AAA domain (Cd 94.4 0.04 8.7E-07 54.1 3.9 91 210-315 3-104 (171)
366 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.6 1.3E-05 47.9 12.9 23 211-233 35-57 (207)
367 PRK06217 hypothetical protein; 94.4 0.062 1.3E-06 53.9 5.4 25 212-236 3-27 (183)
368 PRK05480 uridine/cytidine kina 94.4 0.034 7.4E-07 57.3 3.5 26 209-234 5-30 (209)
369 PRK06547 hypothetical protein; 94.4 0.055 1.2E-06 53.3 4.7 26 209-234 14-39 (172)
370 PF03969 AFG1_ATPase: AFG1-lik 94.3 0.15 3.2E-06 56.7 8.5 106 208-328 60-166 (362)
371 cd03263 ABC_subfamily_A The AB 94.3 0.34 7.3E-06 50.4 11.0 24 211-234 29-52 (220)
372 TIGR00554 panK_bact pantothena 94.3 0.15 3.3E-06 54.5 8.3 25 208-232 60-84 (290)
373 PRK04301 radA DNA repair and r 94.3 0.2 4.3E-06 55.3 9.5 58 209-267 101-161 (317)
374 PRK13538 cytochrome c biogenes 94.3 0.44 9.6E-06 48.8 11.6 24 211-234 28-51 (204)
375 cd03282 ABC_MSH4_euk MutS4 hom 94.3 0.079 1.7E-06 53.8 5.9 120 210-337 29-158 (204)
376 COG0396 sufC Cysteine desulfur 94.3 0.55 1.2E-05 47.1 11.3 60 281-340 153-214 (251)
377 PRK15429 formate hydrogenlyase 94.3 0.2 4.2E-06 61.9 10.5 134 184-329 376-520 (686)
378 PRK14723 flhF flagellar biosyn 94.3 0.23 4.9E-06 59.9 10.4 87 210-300 185-273 (767)
379 PRK13540 cytochrome c biogenes 94.2 0.42 9.1E-06 48.8 11.2 24 211-234 28-51 (200)
380 PRK14527 adenylate kinase; Pro 94.2 0.11 2.4E-06 52.5 6.9 26 210-235 6-31 (191)
381 TIGR03878 thermo_KaiC_2 KaiC d 94.2 0.19 4.2E-06 53.4 8.9 42 209-253 35-76 (259)
382 KOG0733 Nuclear AAA ATPase (VC 94.2 0.26 5.7E-06 56.0 10.0 132 210-362 545-694 (802)
383 cd03245 ABCC_bacteriocin_expor 94.2 0.48 1E-05 49.2 11.8 24 211-234 31-54 (220)
384 COG1428 Deoxynucleoside kinase 94.2 0.034 7.4E-07 54.8 2.8 26 210-235 4-29 (216)
385 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.27 5.8E-06 51.5 9.8 40 210-252 20-59 (229)
386 PF13306 LRR_5: Leucine rich r 94.2 0.17 3.6E-06 47.4 7.5 98 975-1085 30-129 (129)
387 PRK11608 pspF phage shock prot 94.2 0.16 3.6E-06 56.0 8.5 133 185-329 7-150 (326)
388 PF03308 ArgK: ArgK protein; 94.2 0.067 1.4E-06 54.8 4.9 62 192-257 14-75 (266)
389 COG1703 ArgK Putative periplas 94.1 0.057 1.2E-06 56.1 4.4 62 194-259 38-99 (323)
390 TIGR00235 udk uridine kinase. 94.1 0.044 9.5E-07 56.3 3.7 25 210-234 6-30 (207)
391 cd03281 ABC_MSH5_euk MutS5 hom 94.1 0.12 2.5E-06 53.2 6.7 23 210-232 29-51 (213)
392 PRK06762 hypothetical protein; 94.1 0.04 8.6E-07 54.4 3.1 25 210-234 2-26 (166)
393 PRK09544 znuC high-affinity zi 94.1 0.42 9E-06 50.7 11.1 24 211-234 31-54 (251)
394 COG5238 RNA1 Ran GTPase-activa 94.0 0.015 3.3E-07 58.7 0.1 81 614-695 26-126 (388)
395 PRK08972 fliI flagellum-specif 94.0 0.21 4.5E-06 56.1 8.9 85 210-299 162-261 (444)
396 PRK05986 cob(I)alamin adenolsy 94.0 0.23 4.9E-06 49.0 8.1 118 210-330 22-158 (191)
397 cd03233 ABC_PDR_domain1 The pl 94.0 0.57 1.2E-05 47.8 11.6 25 211-235 34-58 (202)
398 cd03231 ABC_CcmA_heme_exporter 94.0 0.5 1.1E-05 48.2 11.2 24 211-234 27-50 (201)
399 cd03215 ABC_Carb_Monos_II This 94.0 0.51 1.1E-05 47.2 11.1 25 211-235 27-51 (182)
400 TIGR03740 galliderm_ABC gallid 94.0 0.61 1.3E-05 48.6 12.0 24 211-234 27-50 (223)
401 COG4618 ArpD ABC-type protease 94.0 0.55 1.2E-05 52.6 11.7 23 211-233 363-385 (580)
402 cd03226 ABC_cobalt_CbiO_domain 93.9 0.49 1.1E-05 48.5 11.1 24 211-234 27-50 (205)
403 PRK06995 flhF flagellar biosyn 93.9 0.25 5.4E-06 56.6 9.5 88 210-300 256-344 (484)
404 PRK13543 cytochrome c biogenes 93.9 0.8 1.7E-05 47.3 12.6 24 211-234 38-61 (214)
405 cd03237 ABC_RNaseL_inhibitor_d 93.9 0.38 8.1E-06 50.8 10.3 125 211-335 26-181 (246)
406 PRK06731 flhF flagellar biosyn 93.8 0.35 7.7E-06 51.2 9.8 102 210-314 75-180 (270)
407 TIGR01069 mutS2 MutS2 family p 93.8 0.088 1.9E-06 64.8 6.1 24 210-233 322-345 (771)
408 PRK05973 replicative DNA helic 93.8 0.35 7.5E-06 50.0 9.5 112 210-329 64-192 (237)
409 PRK09580 sufC cysteine desulfu 93.8 0.57 1.2E-05 49.7 11.7 23 211-233 28-50 (248)
410 cd00267 ABC_ATPase ABC (ATP-bi 93.8 0.24 5.1E-06 48.3 8.1 118 211-335 26-145 (157)
411 cd03232 ABC_PDR_domain2 The pl 93.8 0.42 9E-06 48.4 10.1 23 211-233 34-56 (192)
412 cd03244 ABCC_MRP_domain2 Domai 93.8 0.94 2E-05 47.1 13.1 24 211-234 31-54 (221)
413 cd03251 ABCC_MsbA MsbA is an e 93.8 0.86 1.9E-05 47.8 12.9 24 211-234 29-52 (234)
414 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.8 0.59 1.3E-05 48.6 11.4 24 211-234 49-72 (224)
415 cd03235 ABC_Metallic_Cations A 93.8 0.48 1E-05 48.9 10.7 24 211-234 26-49 (213)
416 cd02021 GntK Gluconate kinase 93.8 0.39 8.4E-06 46.3 9.4 22 212-233 1-22 (150)
417 cd03254 ABCC_Glucan_exporter_l 93.7 0.69 1.5E-05 48.4 12.0 24 211-234 30-53 (229)
418 PF00910 RNA_helicase: RNA hel 93.7 0.035 7.6E-07 49.9 1.9 22 213-234 1-22 (107)
419 PTZ00035 Rad51 protein; Provis 93.7 0.3 6.5E-06 53.9 9.5 59 209-268 117-178 (337)
420 TIGR03522 GldA_ABC_ATP gliding 93.7 0.63 1.4E-05 50.9 12.0 24 211-234 29-52 (301)
421 KOG0728 26S proteasome regulat 93.7 0.88 1.9E-05 45.7 11.4 133 208-361 179-332 (404)
422 PRK06002 fliI flagellum-specif 93.7 0.28 6.1E-06 55.4 9.3 85 211-299 166-263 (450)
423 TIGR02974 phageshock_pspF psp 93.7 0.19 4.1E-06 55.5 7.9 132 186-329 1-143 (329)
424 cd03250 ABCC_MRP_domain1 Domai 93.7 1.1 2.4E-05 45.8 13.1 25 211-235 32-56 (204)
425 PHA00729 NTP-binding motif con 93.7 0.088 1.9E-06 53.5 4.7 24 210-233 17-40 (226)
426 PRK08149 ATP synthase SpaL; Va 93.6 0.25 5.5E-06 55.6 8.7 84 211-299 152-250 (428)
427 PRK14721 flhF flagellar biosyn 93.6 0.25 5.5E-06 55.6 8.7 24 210-233 191-214 (420)
428 TIGR03771 anch_rpt_ABC anchore 93.6 0.73 1.6E-05 47.9 11.7 24 211-234 7-30 (223)
429 PRK03839 putative kinase; Prov 93.6 0.049 1.1E-06 54.5 2.8 24 212-235 2-25 (180)
430 PRK04328 hypothetical protein; 93.6 0.3 6.6E-06 51.6 8.9 41 210-253 23-63 (249)
431 cd01428 ADK Adenylate kinase ( 93.5 0.25 5.3E-06 50.2 8.0 22 213-234 2-23 (194)
432 COG2842 Uncharacterized ATPase 93.5 0.74 1.6E-05 48.2 11.1 97 211-316 95-191 (297)
433 COG0529 CysC Adenylylsulfate k 93.5 0.11 2.4E-06 49.4 4.7 27 210-236 23-49 (197)
434 TIGR02868 CydC thiol reductant 93.5 0.52 1.1E-05 56.5 11.8 26 210-235 361-386 (529)
435 KOG2170 ATPase of the AAA+ sup 93.4 0.27 5.8E-06 51.1 7.7 114 185-315 83-203 (344)
436 COG3598 RepA RecA-family ATPas 93.4 0.19 4.1E-06 52.5 6.7 118 211-328 90-240 (402)
437 COG4088 Predicted nucleotide k 93.4 0.043 9.3E-07 53.3 1.9 25 211-235 2-26 (261)
438 TIGR03877 thermo_KaiC_1 KaiC d 93.4 0.25 5.4E-06 51.9 8.0 48 209-261 20-67 (237)
439 cd03264 ABC_drug_resistance_li 93.4 0.62 1.3E-05 48.0 10.8 22 212-233 27-48 (211)
440 cd03252 ABCC_Hemolysin The ABC 93.4 1.1 2.4E-05 47.1 13.0 52 283-334 149-201 (237)
441 COG0465 HflB ATP-dependent Zn 93.4 0.63 1.4E-05 54.3 11.6 56 181-236 147-209 (596)
442 PRK05917 DNA polymerase III su 93.4 1.1 2.4E-05 47.8 12.5 131 193-347 6-154 (290)
443 PRK05022 anaerobic nitric oxid 93.4 0.3 6.6E-06 57.7 9.4 135 183-329 186-331 (509)
444 KOG0473 Leucine-rich repeat pr 93.4 0.0047 1E-07 60.7 -4.6 85 591-676 38-122 (326)
445 PRK08927 fliI flagellum-specif 93.4 0.38 8.2E-06 54.4 9.5 85 210-299 158-257 (442)
446 PF13481 AAA_25: AAA domain; P 93.4 0.27 5.8E-06 49.9 7.9 43 211-253 33-82 (193)
447 PF13504 LRR_7: Leucine rich r 93.3 0.052 1.1E-06 30.0 1.4 12 620-631 3-14 (17)
448 COG0194 Gmk Guanylate kinase [ 93.3 0.096 2.1E-06 50.6 4.1 25 210-234 4-28 (191)
449 PRK12678 transcription termina 93.3 0.13 2.7E-06 58.9 5.6 99 195-299 405-512 (672)
450 PRK04040 adenylate kinase; Pro 93.3 0.066 1.4E-06 53.7 3.1 25 210-234 2-26 (188)
451 KOG0743 AAA+-type ATPase [Post 93.2 1.5 3.3E-05 48.6 13.5 24 211-234 236-259 (457)
452 TIGR03575 selen_PSTK_euk L-ser 93.2 0.18 3.9E-06 55.1 6.5 23 213-235 2-24 (340)
453 PF03215 Rad17: Rad17 cell cyc 93.2 0.08 1.7E-06 61.6 4.1 60 184-248 19-78 (519)
454 cd03253 ABCC_ATM1_transporter 93.2 0.82 1.8E-05 48.1 11.5 54 282-335 147-201 (236)
455 cd01135 V_A-ATPase_B V/A-type 93.2 0.39 8.4E-06 50.5 8.6 88 211-299 70-175 (276)
456 PRK11247 ssuB aliphatic sulfon 93.2 0.93 2E-05 48.2 11.9 24 211-234 39-62 (257)
457 PF06309 Torsin: Torsin; Inte 93.2 0.14 3E-06 46.5 4.6 39 193-233 38-76 (127)
458 cd01121 Sms Sms (bacterial rad 93.1 0.33 7.2E-06 54.2 8.7 81 210-299 82-167 (372)
459 cd03300 ABC_PotA_N PotA is an 93.1 0.64 1.4E-05 48.7 10.5 25 211-235 27-51 (232)
460 PF06414 Zeta_toxin: Zeta toxi 93.1 0.22 4.7E-06 50.8 6.7 103 207-316 12-117 (199)
461 PRK10751 molybdopterin-guanine 93.1 0.093 2E-06 51.2 3.7 28 209-236 5-32 (173)
462 cd03283 ABC_MutS-like MutS-lik 93.1 0.18 3.9E-06 51.1 6.0 22 211-232 26-47 (199)
463 PRK13647 cbiO cobalt transport 93.0 0.8 1.7E-05 49.3 11.2 24 211-234 32-55 (274)
464 TIGR02322 phosphon_PhnN phosph 93.0 0.073 1.6E-06 53.3 3.0 24 211-234 2-25 (179)
465 cd03213 ABCG_EPDR ABCG transpo 93.0 0.72 1.6E-05 46.7 10.3 24 211-234 36-59 (194)
466 PRK10463 hydrogenase nickel in 92.9 0.89 1.9E-05 48.3 11.0 27 209-235 103-129 (290)
467 TIGR03498 FliI_clade3 flagella 92.9 0.37 8E-06 54.4 8.6 84 211-299 141-239 (418)
468 cd02023 UMPK Uridine monophosp 92.9 0.062 1.3E-06 54.8 2.4 22 212-233 1-22 (198)
469 PRK07594 type III secretion sy 92.9 0.46 1E-05 53.7 9.4 85 210-299 155-254 (433)
470 PF13504 LRR_7: Leucine rich r 92.9 0.072 1.6E-06 29.5 1.5 17 595-611 1-17 (17)
471 cd02024 NRK1 Nicotinamide ribo 92.9 0.065 1.4E-06 53.3 2.4 23 212-234 1-23 (187)
472 PRK10416 signal recognition pa 92.9 0.64 1.4E-05 50.8 10.2 27 209-235 113-139 (318)
473 COG1936 Predicted nucleotide k 92.8 0.081 1.8E-06 50.3 2.8 20 212-231 2-21 (180)
474 TIGR00382 clpX endopeptidase C 92.8 0.84 1.8E-05 51.5 11.3 52 183-234 76-140 (413)
475 COG1419 FlhF Flagellar GTP-bin 92.8 0.3 6.5E-06 53.7 7.5 87 210-300 203-291 (407)
476 PRK14269 phosphate ABC transpo 92.8 1.3 2.7E-05 47.0 12.3 23 211-233 29-51 (246)
477 COG2274 SunT ABC-type bacterio 92.8 0.9 2E-05 55.2 12.2 52 282-333 619-672 (709)
478 PRK10418 nikD nickel transport 92.7 1.2 2.6E-05 47.4 12.0 24 211-234 30-53 (254)
479 KOG0058 Peptide exporter, ABC 92.7 0.45 9.8E-06 55.8 9.1 52 282-333 614-667 (716)
480 PRK06793 fliI flagellum-specif 92.7 0.77 1.7E-05 51.9 10.7 85 210-299 156-255 (432)
481 COG4181 Predicted ABC-type tra 92.7 2.1 4.6E-05 40.7 11.6 84 254-337 122-214 (228)
482 KOG0729 26S proteasome regulat 92.7 0.23 5.1E-06 50.0 5.8 52 183-234 176-235 (435)
483 TIGR01313 therm_gnt_kin carboh 92.7 0.43 9.3E-06 46.8 7.9 22 213-234 1-22 (163)
484 PRK00131 aroK shikimate kinase 92.6 0.086 1.9E-06 52.5 3.0 25 210-234 4-28 (175)
485 PF06745 KaiC: KaiC; InterPro 92.6 0.17 3.7E-06 52.9 5.3 85 210-299 19-124 (226)
486 cd01136 ATPase_flagellum-secre 92.6 0.74 1.6E-05 50.1 10.2 84 211-299 70-168 (326)
487 cd00227 CPT Chloramphenicol (C 92.6 0.081 1.8E-06 52.6 2.7 23 211-233 3-25 (175)
488 PF00154 RecA: recA bacterial 92.6 0.16 3.5E-06 54.8 5.0 82 210-299 53-140 (322)
489 TIGR00968 3a0106s01 sulfate AB 92.6 0.82 1.8E-05 48.1 10.4 24 211-234 27-50 (237)
490 TIGR00150 HI0065_YjeE ATPase, 92.6 0.16 3.4E-06 47.1 4.3 25 211-235 23-47 (133)
491 cd03240 ABC_Rad50 The catalyti 92.6 0.73 1.6E-05 47.0 9.7 54 282-335 131-188 (204)
492 PRK15453 phosphoribulokinase; 92.6 0.46 1E-05 49.9 8.2 25 209-233 4-28 (290)
493 PLN02348 phosphoribulokinase 92.6 0.13 2.8E-06 56.7 4.4 27 208-234 47-73 (395)
494 cd01134 V_A-ATPase_A V/A-type 92.6 0.83 1.8E-05 49.5 10.2 59 195-262 146-205 (369)
495 PRK14528 adenylate kinase; Pro 92.5 0.23 5E-06 49.9 5.8 24 211-234 2-25 (186)
496 COG2019 AdkA Archaeal adenylat 92.5 0.11 2.3E-06 49.0 3.0 25 210-234 4-28 (189)
497 KOG0736 Peroxisome assembly fa 92.5 0.31 6.8E-06 57.1 7.4 99 176-301 664-775 (953)
498 smart00534 MUTSac ATPase domai 92.5 0.093 2E-06 52.7 2.9 21 212-232 1-21 (185)
499 TIGR03263 guanyl_kin guanylate 92.4 0.098 2.1E-06 52.4 3.1 23 211-233 2-24 (180)
500 PF03205 MobB: Molybdopterin g 92.4 0.13 2.7E-06 48.7 3.6 39 211-251 1-39 (140)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-84 Score=774.49 Aligned_cols=802 Identities=30% Similarity=0.449 Sum_probs=579.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHhHhhHhHHHHHHHHHHHhhhhccCCCCCcccccccc
Q 001281 35 GVDSDQLKNWEQKLKMIQAVLGDAEEKQLTDEAVKIWLDDLRDLAYDAEDILDEFATQALENRLMAEDPDHQPTASRVRN 114 (1108)
Q Consensus 35 gv~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~eD~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1108)
|++ +.+..|+++|..++.+++||++++.....+..|.+.+++++|++||+++.|.......+.... -......++
T Consensus 25 ~~~-~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~----l~~~~~~~~ 99 (889)
T KOG4658|consen 25 GKD-NYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDL----LSTRSVERQ 99 (889)
T ss_pred chH-HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhhhHHHHH
Confidence 465 889999999999999999999999999999999999999999999999999988765533210 000011111
Q ss_pred ccccccccCCCCCccccchHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCcccccccCCCCCCccccCCceeccchhHH
Q 001281 115 IFPVACFNCFSPSTIGFNSSMRSKIKDITCRLEELWKQRIELGLQLTPGGTSSAIAAQQRPPSSSVRTERAVYGRDDDKA 194 (1108)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~ 194 (1108)
. .|. ..+.++.+..+..+.+++..+.+....++........+......+..+..+...... ||.++.++
T Consensus 100 ~---~c~-------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~ 168 (889)
T KOG4658|consen 100 R---LCL-------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLE 168 (889)
T ss_pred H---Hhh-------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHH
Confidence 1 111 145667778888888888888888888876542221111010112233344444445 99999999
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc-ccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCc
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKA-VSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDL 273 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 273 (1108)
++...|..++ ..+++|+||||+||||||+.++++.. ++. +||.++||+||+.++...++.+|++.++......
T Consensus 169 kl~~~L~~d~-----~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~-~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~ 242 (889)
T KOG4658|consen 169 KLWNRLMEDD-----VGIVGIYGMGGVGKTTLARQIFNKFDEVGN-HFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEW 242 (889)
T ss_pred HHHHHhccCC-----CCEEEEECCCcccHHHHHHHHhcccchhcc-cCceEEEEEEcccccHHhHHHHHHHHhccCCccc
Confidence 9999998876 38999999999999999999999988 777 9999999999999999999999999998754432
Q ss_pred --ccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhhh-ccccceeeCCCCChh
Q 001281 274 --KALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAST-MGSVEHYNLSLLSDD 350 (1108)
Q Consensus 274 --~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~L~~~ 350 (1108)
...++++..+.+.|++|||+||+||||++ .+|+.+..++|....||||++|||+..|+.. +++...++++.|+++
T Consensus 243 ~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ 320 (889)
T KOG4658|consen 243 EDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPE 320 (889)
T ss_pred chhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcc
Confidence 23478899999999999999999999998 7799999999999999999999999999998 788889999999999
Q ss_pred hHHHHHHhhhcCCCC--ccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCChhHHHHHHhhccCC----CC-CCCC
Q 001281 351 DCWFVFMNHAFYTRD--HIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWEDILNSNIWD----LP-EQSG 423 (1108)
Q Consensus 351 ~~~~lf~~~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~----~~-~~~~ 423 (1108)
|||.||++.|+.... .+.++ ++|++++++|+|+|||++++|+.|+.+.+..+|+++.+...+. .+ ..+.
T Consensus 321 eaW~LF~~~v~~~~~~~~~~i~----~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 321 EAWDLFQKKVGPNTLGSHPDIE----ELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred ccHHHHHHhhccccccccccHH----HHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 999999999987643 33456 8999999999999999999999999999999999999876544 22 3568
Q ss_pred hhHHHHHhhhcCChhHHHHHhHhcccCCCceechHHHHHHHHHcCCccCCCCchhHHHHHHHHHHHHHhCccccccC--C
Q 001281 424 VQPVLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDWGSECFHDLVSRSIFQQSS--G 501 (1108)
Q Consensus 424 i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~~--~ 501 (1108)
+..+|++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+.+.+..++++|..|+.+|++++|++... .
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~ 476 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEG 476 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999997778899999999999999999998765 3
Q ss_pred CCCeEEEchhHHHHHHHhhc-----cceEEeccc-----ccccccccceeEEEeecCCCCcccccccccCCCCceEEeee
Q 001281 502 DGSKFVMHDLVHDLAQLVSG-----ESICRLEEA-----NKLSRRFERVRHSSYTRGHFDSKIRFESLYEVPHLRTFLPV 571 (1108)
Q Consensus 502 ~~~~~~~H~lv~~~a~~~~~-----~~~~~~~~~-----~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~ 571 (1108)
....|+|||+||++|.++++ ++...+..+ ......+..+|++++..+... ....-..+++|+||.+.
T Consensus 477 ~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~---~~~~~~~~~~L~tLll~ 553 (889)
T KOG4658|consen 477 RKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE---HIAGSSENPKLRTLLLQ 553 (889)
T ss_pred ceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh---hccCCCCCCccceEEEe
Confidence 45689999999999999999 444444332 112233467889888776542 22333456689999988
Q ss_pred eecCCCCCccchhhhhhhhccCCCcccEEEecCcc-ccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecC
Q 001281 572 FIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYY-VTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRD 650 (1108)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~ 650 (1108)
.+.. ....+...+|..++.||||||++|. +.++|++|++|.|||||+++++.|+.+|.++++|..|.+||+..
T Consensus 554 ~n~~------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 554 RNSD------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred ecch------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 7642 1134455678999999999999876 78999999999999999999999999999999999999999999
Q ss_pred CcCCcccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCccCceeeCCCCC---CCccccccccccCceeEecCccC
Q 001281 651 CSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTG---SGLKDLKNLKFLHGELCISGLQN 727 (1108)
Q Consensus 651 ~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~---~~l~~l~~L~~L~~~l~i~~l~~ 727 (1108)
+..+..+|.....|++||+|.+.... ...-...++.+.+|++|..+.+..... ..+..+..|..+...+.+..
T Consensus 628 ~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~--- 703 (889)
T KOG4658|consen 628 TGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG--- 703 (889)
T ss_pred ccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc---
Confidence 87777777777789999999997664 221122344555555554433322222 11222222222221111111
Q ss_pred CCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCC-CCCCCCeEEEeecCCCCCccccccCCcCcceE
Q 001281 728 VNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQ-PHTNLKKLAITSYSGENFPMWIGDLSFSKMEV 806 (1108)
Q Consensus 728 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~ 806 (1108)
.........+..+.+|+.|.+..+........... -.... .++++.++.+.++.....+.|... .++|+.
T Consensus 704 --~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~-----~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f--~~~L~~ 774 (889)
T KOG4658|consen 704 --CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE-----SLIVLLCFPNLSKVSILNCHMLRDLTWLLF--APHLTS 774 (889)
T ss_pred --cccceeecccccccCcceEEEEcCCCchhhccccc-----ccchhhhHHHHHHHHhhccccccccchhhc--cCcccE
Confidence 11122334455666777777766554221110000 00000 123444444444444444444431 256666
Q ss_pred EEEeCCCCCCCC-CCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceE-ecccCCcccccccccCCccccCCc
Q 001281 807 LELQNCQNCTSL-PSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETL-RFENLPEWECWDTKENGLLAGFSS 884 (1108)
Q Consensus 807 L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~ 884 (1108)
|.+..|...+.+ |....+..++.+. ..|.+++.+ .+.+.+.+..+... .-.++.
T Consensus 775 l~l~~~~~~e~~i~~~k~~~~l~~~i--------------------~~f~~~~~l~~~~~l~~l~~i~~~----~l~~~~ 830 (889)
T KOG4658|consen 775 LSLVSCRLLEDIIPKLKALLELKELI--------------------LPFNKLEGLRMLCSLGGLPQLYWL----PLSFLK 830 (889)
T ss_pred EEEecccccccCCCHHHHhhhcccEE--------------------ecccccccceeeecCCCCceeEec----ccCccc
Confidence 666666554332 2233333333321 223344444 34444433333211 123455
Q ss_pred ccEEeecCCCCCCCCCCCCCCCccEEEEccC
Q 001281 885 LRELSILKCPKFSGKLPELLPSLEILVISKC 915 (1108)
Q Consensus 885 L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~ 915 (1108)
|+.+.+..||++. . +|.+.++.+.+|
T Consensus 831 l~~~~ve~~p~l~-~----~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 831 LEELIVEECPKLG-K----LPLLSTLTIVGC 856 (889)
T ss_pred hhheehhcCcccc-c----Cccccccceecc
Confidence 7777788888773 3 445666667665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.5e-64 Score=636.58 Aligned_cols=474 Identities=21% Similarity=0.308 Sum_probs=360.9
Q ss_pred cCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEe---CCC------
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCV---SDE------ 252 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~------ 252 (1108)
....+|||++.++++..+|... ..++++|+|+||||+||||||+++|+... . .|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~---~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~-~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE---SEEVRMVGIWGSSGIGKTTIARALFSRLS--R-QFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc---cCceEEEEEEcCCCCchHHHHHHHHHHHh--h-cCCeEEEeeccccccchhhccc
Confidence 3457999999999999888533 24589999999999999999999998654 3 7888887642 111
Q ss_pred -----CC-HHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEE
Q 001281 253 -----FD-VLSISMALLESITCKPC-DLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIV 325 (1108)
Q Consensus 253 -----~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 325 (1108)
++ ...++.+++.++..... ..... ..+++.++++|+||||||||+. .+|+.+.....+.++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 01 12344455555433211 11111 3567789999999999999875 789988877777789999999
Q ss_pred ecCchhhhhhccccceeeCCCCChhhHHHHHHhhhcCCCCcc-chhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCCh
Q 001281 326 TTRHSHVASTMGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHI-HVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGD 404 (1108)
Q Consensus 326 TtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~ 404 (1108)
|||+..++..++..+.|+++.+++++||+||+++||+...++ ... +++++|+++|+|+|||++++|++|+++ +.
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~----~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~ 404 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFM----ELASEVALRAGNLPLGLNVLGSYLRGR-DK 404 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHH----HHHHHHHHHhCCCcHHHHHHHHHHcCC-CH
Confidence 999999998877778999999999999999999999765432 334 789999999999999999999999986 67
Q ss_pred hHHHHHHhhccCCCCCCCChhHHHHHhhhcCCh-hHHHHHhHhcccCCCceechHHHHHHHHHcCCccCCCCchhHHHHH
Q 001281 405 NAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPS-HLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDWG 483 (1108)
Q Consensus 405 ~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 483 (1108)
.+|+.+++...... +..|..+|++||+.|++ ..|.||+++|+|+.++.++ .+..|++.+....
T Consensus 405 ~~W~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------- 468 (1153)
T PLN03210 405 EDWMDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------- 468 (1153)
T ss_pred HHHHHHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------
Confidence 89999998765433 46799999999999987 5999999999999887553 4667877765432
Q ss_pred HHHHHHHHhCccccccCCCCCeEEEchhHHHHHHHhhccce-------EEecccc-----cccccccceeEEEeecCCCC
Q 001281 484 SECFHDLVSRSIFQQSSGDGSKFVMHDLVHDLAQLVSGESI-------CRLEEAN-----KLSRRFERVRHSSYTRGHFD 551 (1108)
Q Consensus 484 ~~~~~~L~~~~li~~~~~~~~~~~~H~lv~~~a~~~~~~~~-------~~~~~~~-----~~~~~~~~~r~l~~~~~~~~ 551 (1108)
+..++.|+++||++... .++.|||++|++|+.++.++. +.+...+ ........++++++.....+
T Consensus 469 ~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 22388999999998753 369999999999999986542 1111110 01122345677766544332
Q ss_pred c-ccccccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCC-CcccEEEecCccccccCcchhcCCCCcEEEeeCcc
Q 001281 552 S-KIRFESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKF-KKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQ 629 (1108)
Q Consensus 552 ~-~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~ 629 (1108)
. ......|..|++|+.|.+....... ..... ..++..|..+ ..||.|.+.++.++.+|..+ ...+|++|+++++.
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~-~~~~~-~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQ-KKEVR-WHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK 622 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccc-cccce-eecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc
Confidence 2 1234567889999999876543210 00011 1123334444 46999999999999999887 57899999999999
Q ss_pred ccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCccC
Q 001281 630 IRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 630 i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
+..+|.++..+++|++|+|++|..++.+|. ++.+++|++|++++|..+..+|..++++++|+.|.
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 999999999999999999999888888886 88999999999999988889999898888888885
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-41 Score=373.29 Aligned_cols=275 Identities=37% Similarity=0.603 Sum_probs=224.0
Q ss_pred cchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 189 RDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
||.++++|.+.|.... .+.++|+|+||||+||||||.+++++...+. +|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~---~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS---NEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT---TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC---CCeEEEEEEcCCcCCcceeeeeccccccccc-ccccccccccccccccccccccccccccc
Confidence 7899999999998744 3489999999999999999999999866666 89999999999999999999999999988
Q ss_pred CCC---CcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhhhccc-cceeeC
Q 001281 269 KPC---DLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVASTMGS-VEHYNL 344 (1108)
Q Consensus 269 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 344 (1108)
... ...+.++....+.+.+.++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 3456778899999999999999999999876 6898888888877889999999999999887765 678999
Q ss_pred CCCChhhHHHHHHhhhcCCC--CccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCChhHHHHHHhhccCCCC---
Q 001281 345 SLLSDDDCWFVFMNHAFYTR--DHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWEDILNSNIWDLP--- 419 (1108)
Q Consensus 345 ~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~--- 419 (1108)
++|+++||++||.+.++... .....+ +.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.......
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~----~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~ 230 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLE----DLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR 230 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSC----THHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS
T ss_pred cccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997665 233334 788999999999999999999999766677889998876444332
Q ss_pred -CCCChhHHHHHhhhcCChhHHHHHhHhcccCCCceechHHHHHHHHHcCCccCC
Q 001281 420 -EQSGVQPVLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQP 473 (1108)
Q Consensus 420 -~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 473 (1108)
....+..++.+||+.||+++|.||+|||+||+++.|+++.++++|+++|||.+.
T Consensus 231 ~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 231 DYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp GSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 346789999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6e-35 Score=375.08 Aligned_cols=506 Identities=16% Similarity=0.167 Sum_probs=371.6
Q ss_pred cceeEEEeecCCCCcccccccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccc-ccCcchhc
Q 001281 538 ERVRHSSYTRGHFDSKIRFESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVT-QLPNSIKE 616 (1108)
Q Consensus 538 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~ 616 (1108)
..++.+.+..+..... ....+..+++|+.|.+.++.. ...++...+..+++|++|+|++|.++ .+|. +.
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~-------~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~ 138 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQL-------SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GS 138 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCcc-------CCcCChHHhccCCCCCEEECcCCccccccCc--cc
Confidence 4677777766544332 234577899999998876653 22345556778999999999999987 4564 56
Q ss_pred CCCCcEEEeeCcccc-ccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCccC
Q 001281 617 LKLLRYLNVAGTQIR-SLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 617 l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
+++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|.
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 889999999999987 6788999999999999999877778999999999999999999986667888899999999885
Q ss_pred ceee--CCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCC
Q 001281 696 NFIV--GKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDML 773 (1108)
Q Consensus 696 ~~~~--~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 773 (1108)
.... ....+..+..+++|+.|. ...+.+....+..+.++++|+.|++++|...+..+. .+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~--------L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----------~l 280 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLD--------LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP----------SI 280 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEE--------CcCceeccccChhHhCCCCCCEEECcCCeeeccCch----------hH
Confidence 3322 223344566777777664 222334445666788889999999988765433322 24
Q ss_pred CCCCCCCeEEEeecCCC-CCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCccc
Q 001281 774 QPHTNLKKLAITSYSGE-NFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDIL 851 (1108)
Q Consensus 774 ~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 851 (1108)
..+++|++|++++|... .+|.++. .+++|+.|++++|.+.+.+| .+..+++|+.|++++|.....++.. +
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~------l 352 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN------L 352 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH------H
Confidence 55678999999888754 5677776 46899999999998877766 4788999999999988755555533 2
Q ss_pred CcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC---CCCCccEEEEccCCCcc---ccCCCC
Q 001281 852 NTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE---LLPSLEILVISKCADLV---VPFSSF 925 (1108)
Q Consensus 852 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~---~~~~~l 925 (1108)
..+++|+.|++.++.-... .+..+..+++|+.|++.+| ++.+.+|. .+++|+.|++++|.... ..+..+
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~----~p~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGE----IPEGLCSSGNLFKLILFSN-SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred hCCCCCcEEECCCCeeEee----CChhHhCcCCCCEEECcCC-EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 4578888888877532111 2233456788999999885 55566775 46788999998887542 235568
Q ss_pred CcccEEEEeecCCccc--cCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc--cCCC
Q 001281 926 PMLCRLEIEECKGITC--STPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL--KQGF 1001 (1108)
Q Consensus 926 ~~L~~L~l~~c~~l~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l 1001 (1108)
++|+.|++++|..... ..+..+++|+.|++++|.+... . |.. ...++|+.|++++|......+ +..+
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~------p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG--L------PDS-FGSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee--c------Ccc-cccccceEEECcCCccCCccChhhhhh
Confidence 8899999998874332 2345688999999997765421 1 111 145789999999876655554 4678
Q ss_pred CCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceEecccccCCCCCcccCCCCC
Q 001281 1002 QQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNN 1081 (1108)
Q Consensus 1002 ~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l 1081 (1108)
++|++|++++|.. ...+|..+.++++|++|+|+ +|.-...+|..+..+++|+.|++++|+....+|. .+..+
T Consensus 499 ~~L~~L~Ls~N~l------~~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l 570 (968)
T PLN00113 499 SELMQLKLSENKL------SGEIPDELSSCKKLVSLDLS-HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK-NLGNV 570 (968)
T ss_pred hccCEEECcCCcc------eeeCChHHcCccCCCEEECC-CCcccccCChhHhCcccCCEEECCCCcccccCCh-hHhcC
Confidence 8899999999985 55678888899999999998 5444446777777889999999988765557787 67888
Q ss_pred CCccEEeeecCcCccccccc
Q 001281 1082 AQLEKLFIKYCDNIHRKKQA 1101 (1108)
Q Consensus 1082 ~~L~~L~l~~c~~L~~~~~~ 1101 (1108)
++|+.|++++|+-...+|..
T Consensus 571 ~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 571 ESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred cccCEEeccCCcceeeCCCc
Confidence 99999999999866666643
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-33 Score=362.84 Aligned_cols=501 Identities=18% Similarity=0.192 Sum_probs=380.5
Q ss_pred ccceeEEEeecCCCCcccccccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccc-ccCcchh
Q 001281 537 FERVRHSSYTRGHFDSKIRFESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVT-QLPNSIK 615 (1108)
Q Consensus 537 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~ 615 (1108)
...++.+.+..+.+........+..+++||.|.+.++... ..+ + ...+++|++|+|++|.++ .+|..++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-------~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT-------GSI-P--RGSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc-------ccc-C--ccccCCCCEEECcCCcccccCChHHh
Confidence 3456777776665432222233457899999988766531 111 1 135789999999999987 6799999
Q ss_pred cCCCCcEEEeeCcccc-ccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCcc
Q 001281 616 ELKLLRYLNVAGTQIR-SLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTL 694 (1108)
Q Consensus 616 ~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 694 (1108)
++++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 9999999999999987 789999999999999999998778899999999999999999998666789999999999998
Q ss_pred Ccee--eCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcC
Q 001281 695 SNFI--VGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDM 772 (1108)
Q Consensus 695 ~~~~--~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 772 (1108)
+... .....+..+.++++|+.|. ...+.+....+..+..+++|+.|++++|......+. .
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~--------L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----------~ 303 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLF--------LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE----------L 303 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEE--------CcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh----------h
Confidence 6432 2233445577777777765 223344445566778889999999998875433332 3
Q ss_pred CCCCCCCCeEEEeecCCC-CCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCcc
Q 001281 773 LQPHTNLKKLAITSYSGE-NFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDI 850 (1108)
Q Consensus 773 l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~ 850 (1108)
+..+++|+.|++.+|... .+|.++. .+++|+.|++++|.+.+.+| .++.+++|+.|++++|.....++..+
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~----- 376 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL----- 376 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH-----
Confidence 566789999999998765 4676666 46899999999999987777 48899999999999998666666444
Q ss_pred cCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC---CCCCccEEEEccCCCccc---cCCC
Q 001281 851 LNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE---LLPSLEILVISKCADLVV---PFSS 924 (1108)
Q Consensus 851 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~---~~~~ 924 (1108)
..+++|+.|.+.+..-... .+..+..+++|+.|++.+| ++++.+|. .+++|+.|++++|..... .+..
T Consensus 377 -~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 377 -CSSGNLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQDN-SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred -hCcCCCCEEECcCCEeccc----CCHHHhCCCCCCEEECcCC-EeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 3467899999887532211 2334678999999999997 56667775 468899999999875532 2346
Q ss_pred CCcccEEEEeecCCcc-ccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc--cCCC
Q 001281 925 FPMLCRLEIEECKGIT-CSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL--KQGF 1001 (1108)
Q Consensus 925 l~~L~~L~l~~c~~l~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l 1001 (1108)
+++|+.|++++|.... .+.....++|+.|++++|.+... .|..+..+++|+.|++++|.....+| +..+
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA--------VPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred CCCCcEEECcCceeeeecCcccccccceEEECcCCccCCc--------cChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 8999999999998543 22334568999999998877543 24455689999999999987666665 5788
Q ss_pred CCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceEecccccCCCCCcccCCCCC
Q 001281 1002 QQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNN 1081 (1108)
Q Consensus 1002 ~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l 1081 (1108)
++|++|+|++|.. ...+|..+.++++|++|+++ +|+....+|..+..+++|+.|++++|+-...+|.. ..+
T Consensus 523 ~~L~~L~Ls~N~l------~~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~--~~~ 593 (968)
T PLN00113 523 KKLVSLDLSHNQL------SGQIPASFSEMPVLSQLDLS-QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST--GAF 593 (968)
T ss_pred cCCCEEECCCCcc------cccCChhHhCcccCCEEECC-CCcccccCChhHhcCcccCEEeccCCcceeeCCCc--chh
Confidence 9999999999996 56788999999999999999 65555588988888999999999998777778863 223
Q ss_pred CCccEEeeecCcCc
Q 001281 1082 AQLEKLFIKYCDNI 1095 (1108)
Q Consensus 1082 ~~L~~L~l~~c~~L 1095 (1108)
..+....+.+++.+
T Consensus 594 ~~~~~~~~~~n~~l 607 (968)
T PLN00113 594 LAINASAVAGNIDL 607 (968)
T ss_pred cccChhhhcCCccc
Confidence 44455555555543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=2.3e-27 Score=254.29 Aligned_cols=365 Identities=18% Similarity=0.209 Sum_probs=240.8
Q ss_pred CCcccEEEecCcccc--ccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEe
Q 001281 594 FKKLRVLSLEGYYVT--QLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLD 671 (1108)
Q Consensus 594 l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 671 (1108)
++..|-.|+++|.++ .+|..+..++.++.|.|..+++..+|+.++.|.+|++|.+++|+ +..+-.+++.|+.||.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHHh
Confidence 456777899999886 77999999999999999999999999999999999999999965 666677788889999998
Q ss_pred ecCCCCCC--cCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceE
Q 001281 672 IEGANSLE--GMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALS 749 (1108)
Q Consensus 672 l~~~~~~~--~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 749 (1108)
+..|+ ++ .+|..|.+|.. |..|+
T Consensus 85 ~R~N~-LKnsGiP~diF~l~d------------------------------------------------------Lt~lD 109 (1255)
T KOG0444|consen 85 VRDNN-LKNSGIPTDIFRLKD------------------------------------------------------LTILD 109 (1255)
T ss_pred hhccc-cccCCCCchhccccc------------------------------------------------------ceeee
Confidence 88876 32 35555444443 33444
Q ss_pred EEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccE
Q 001281 750 LQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQ 829 (1108)
Q Consensus 750 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 829 (1108)
|+.|... .++..+....++-.|++++|++..+|..++- .+..|-.|+||+|.+....|....|.+|++
T Consensus 110 LShNqL~-----------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 110 LSHNQLR-----------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cchhhhh-----------hcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 4444321 1223345556777888889999999987763 467888999999987666667888999999
Q ss_pred EEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC---CCCC
Q 001281 830 LTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE---LLPS 906 (1108)
Q Consensus 830 L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~ 906 (1108)
|.|++|+.... . +..+| +|.+|+.|.+++-..--..+|. .+.+
T Consensus 178 L~Ls~NPL~hf------Q---LrQLP-------------------------smtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 178 LKLSNNPLNHF------Q---LRQLP-------------------------SMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred hhcCCChhhHH------H---HhcCc-------------------------cchhhhhhhcccccchhhcCCCchhhhhh
Confidence 99998862110 0 11122 2334444444443221123332 1233
Q ss_pred ccEEEEccCCCc--cccCCCCCcccEEEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcE
Q 001281 907 LEILVISKCADL--VVPFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTS 984 (1108)
Q Consensus 907 L~~L~l~~~~~l--~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~ 984 (1108)
|..++++.|..- ...+..+++|+.|++++| .++.+.... ....+|++
T Consensus 224 L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N----------------------~iteL~~~~---------~~W~~lEt 272 (1255)
T KOG0444|consen 224 LRDVDLSENNLPIVPECLYKLRNLRRLNLSGN----------------------KITELNMTE---------GEWENLET 272 (1255)
T ss_pred hhhccccccCCCcchHHHhhhhhhheeccCcC----------------------ceeeeeccH---------HHHhhhhh
Confidence 333333333211 112233445555555544 443332211 13445566
Q ss_pred EEEcccCCCcccc--cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceE
Q 001281 985 VTISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYL 1062 (1108)
Q Consensus 985 L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L 1062 (1108)
|+++. +.++.+| ...++.|+.|.+.+|.. +++.+|.+++.|.+|+.+..+ .|+++-+|+++..++.|+.|
T Consensus 273 LNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL-----~FeGiPSGIGKL~~Levf~aa--nN~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 273 LNLSR-NQLTVLPDAVCKLTKLTKLYANNNKL-----TFEGIPSGIGKLIQLEVFHAA--NNKLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred hcccc-chhccchHHHhhhHHHHHHHhccCcc-----cccCCccchhhhhhhHHHHhh--ccccccCchhhhhhHHHHHh
Confidence 66655 3455555 46677777777777663 367788888888888888887 77888888887778888888
Q ss_pred ecccccCCCCCcccCCCCCCCccEEeeecCcCccccccc
Q 001281 1063 KIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKKQA 1101 (1108)
Q Consensus 1063 ~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~~~ 1101 (1108)
.+ +|+.+.++|+ ++.-|+.|+.|++..+|+|.+-|.+
T Consensus 345 ~L-~~NrLiTLPe-aIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 345 KL-DHNRLITLPE-AIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred cc-cccceeechh-hhhhcCCcceeeccCCcCccCCCCc
Confidence 88 5677888887 7777888888888888888776655
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=3.4e-27 Score=241.22 Aligned_cols=274 Identities=19% Similarity=0.220 Sum_probs=159.8
Q ss_pred CCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccC
Q 001281 773 LQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILN 852 (1108)
Q Consensus 773 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~ 852 (1108)
+..++.+..|++..|+..++|+.+. -+.+|.+||+++|.+....++++++ .|+.|-+.||+ ++.+-.+....+.-.
T Consensus 248 ~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQE 323 (565)
T ss_pred hcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHH
Confidence 4566788888888888888888776 3578889999998887766788888 88999888886 333332221110000
Q ss_pred cCCccceE-ecccCCcccccccc-------cCCccccCCcccEEeecCCCCCCCCCCCC-CC-----CccEEEEccCCCc
Q 001281 853 TFKTLETL-RFENLPEWECWDTK-------ENGLLAGFSSLRELSILKCPKFSGKLPEL-LP-----SLEILVISKCADL 918 (1108)
Q Consensus 853 ~~~~L~~L-~l~~~~~l~~~~~~-------~~~~~~~~~~L~~L~l~~c~~l~~~~p~~-l~-----~L~~L~l~~~~~l 918 (1108)
.+..|+.= .-.+..+-+.-... .......+-+.+.|++++ .+++ .+|.. +. -.+..+++.|...
T Consensus 324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccc-cCCHHHHHHhhhcceEEEecccchHh
Confidence 11111110 00000000000000 000012234455555555 3443 44431 10 1333444444322
Q ss_pred cccCCCCCcccEEEEeecCCccccCCCCCCCc-cEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc
Q 001281 919 VVPFSSFPMLCRLEIEECKGITCSTPIDCKLI-ESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL 997 (1108)
Q Consensus 919 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 997 (1108)
+.+ ..++. +..+ ..+.+++|.+... |..++.+++|..|++++ +-+.++|
T Consensus 402 elP-k~L~~-------------------lkelvT~l~lsnn~isfv---------~~~l~~l~kLt~L~L~N-N~Ln~LP 451 (565)
T KOG0472|consen 402 ELP-KRLVE-------------------LKELVTDLVLSNNKISFV---------PLELSQLQKLTFLDLSN-NLLNDLP 451 (565)
T ss_pred hhh-hhhHH-------------------HHHHHHHHHhhcCccccc---------hHHHHhhhcceeeeccc-chhhhcc
Confidence 110 01111 1111 1122333332221 22333566777777765 3455555
Q ss_pred --cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccc-cccCCCcceEecccccCCCCCc
Q 001281 998 --KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENSRALKSLP 1074 (1108)
Q Consensus 998 --~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp 1074 (1108)
+..+..|++|+|+.|. +..+|.....+..|+.+-.+ .+.+..++.. +.++.+|.+|++.+ +.+.++|
T Consensus 452 ~e~~~lv~Lq~LnlS~Nr-------Fr~lP~~~y~lq~lEtllas--~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IP 521 (565)
T KOG0472|consen 452 EEMGSLVRLQTLNLSFNR-------FRMLPECLYELQTLETLLAS--NNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIP 521 (565)
T ss_pred hhhhhhhhhheecccccc-------cccchHHHhhHHHHHHHHhc--cccccccChHHhhhhhhcceeccCC-CchhhCC
Confidence 3567779999999986 88899888877777777776 7889999885 67899999999965 7899999
Q ss_pred ccCCCCCCCccEEeeecCc
Q 001281 1075 QEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1075 ~~~l~~l~~L~~L~l~~c~ 1093 (1108)
+ .++++++|++|.++|+|
T Consensus 522 p-~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 522 P-ILGNMTNLRHLELDGNP 539 (565)
T ss_pred h-hhccccceeEEEecCCc
Confidence 8 78999999999999987
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-24 Score=232.82 Aligned_cols=358 Identities=17% Similarity=0.176 Sum_probs=197.1
Q ss_pred cccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecC
Q 001281 596 KLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEG 674 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 674 (1108)
.-+.||+++|.+..+ +..|.++++|+.+++..|.++.+|...+...+|+.|+|.+|.....-.+.+..++.||.|||+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 456688888888776 6667788888888888888888887777777788888887543333344567777888888877
Q ss_pred CCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecC
Q 001281 675 ANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGS 754 (1108)
Q Consensus 675 ~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 754 (1108)
|. +..+|.. .+....++++|+|+.|.
T Consensus 159 N~-is~i~~~-----------------------------------------------------sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 159 NL-ISEIPKP-----------------------------------------------------SFPAKVNIKKLNLASNR 184 (873)
T ss_pred ch-hhcccCC-----------------------------------------------------CCCCCCCceEEeecccc
Confidence 75 4444321 12233456666666665
Q ss_pred CCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCC-CCCCCCCCCccEEEec
Q 001281 755 QFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTS-LPSLSMLGSLKQLTIK 833 (1108)
Q Consensus 755 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~ 833 (1108)
+..... ..+..+.+|..|.++.|.+..+|...+. .+++|+.|+|..|.+... .-.|.+|++|+.|.+.
T Consensus 185 It~l~~----------~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 185 ITTLET----------GHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred cccccc----------ccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 432211 1244455777777777777777765553 367777788777766332 2356777777777777
Q ss_pred CCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC---CCCCccEE
Q 001281 834 GMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE---LLPSLEIL 910 (1108)
Q Consensus 834 ~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L 910 (1108)
.|..-+.-+..|++ +.++++|++.... +... ..+.+.++.+|+.|+++.+ .+...-+. ..++|++|
T Consensus 254 rN~I~kL~DG~Fy~------l~kme~l~L~~N~-l~~v---n~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 254 RNDISKLDDGAFYG------LEKMEHLNLETNR-LQAV---NEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred hcCcccccCcceee------ecccceeecccch-hhhh---hcccccccchhhhhccchh-hhheeecchhhhcccceeE
Confidence 77654444545544 5566666665411 1111 1223445666666666652 33322121 23455555
Q ss_pred EEccCCCccccCCCCCcccEEEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEccc
Q 001281 911 VISKCADLVVPFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNV 990 (1108)
Q Consensus 911 ~l~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 990 (1108)
++++|.... +....+..+..|+.|.+++|++..+.- .+|..+++|+.|+++++
T Consensus 323 dLs~N~i~~-------------------l~~~sf~~L~~Le~LnLs~Nsi~~l~e--------~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 323 DLSSNRITR-------------------LDEGSFRVLSQLEELNLSHNSIDHLAE--------GAFVGLSSLHKLDLRSN 375 (873)
T ss_pred ecccccccc-------------------CChhHHHHHHHhhhhcccccchHHHHh--------hHHHHhhhhhhhcCcCC
Confidence 555554332 222233344444455555444433311 11223444444444432
Q ss_pred CC-----CcccccCCCCCccEEEEeccCCccccccccCCc-ccCCCCCCCcEeEeeccCccccccccccccCCCcceEec
Q 001281 991 LE-----FGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPE-QGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKI 1064 (1108)
Q Consensus 991 ~~-----l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l 1064 (1108)
.. =...+..++++|+.|.+.+|+ ++.+| .+|.+|++|++|++. .|.+.++-...+.-..|++|.+
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNq-------lk~I~krAfsgl~~LE~LdL~--~NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQ-------LKSIPKRAFSGLEALEHLDLG--DNAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCce-------eeecchhhhccCcccceecCC--CCcceeecccccccchhhhhhh
Confidence 11 112223455666666666665 45554 355566666666664 4455555433332225555554
Q ss_pred c
Q 001281 1065 E 1065 (1108)
Q Consensus 1065 ~ 1065 (1108)
.
T Consensus 447 n 447 (873)
T KOG4194|consen 447 N 447 (873)
T ss_pred c
Confidence 3
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.2e-24 Score=230.55 Aligned_cols=384 Identities=15% Similarity=0.187 Sum_probs=253.3
Q ss_pred ccEEEecCccccccC-cchhcC--CCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 597 LRVLSLEGYYVTQLP-NSIKEL--KLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 597 Lr~L~L~~~~i~~lp-~~i~~l--~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
-+.||.+++.+..+. ..+..+ ..-+.|++++|.+..+ +..|.+|+||+.+++.+| .+..+|.......+|++|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEee
Confidence 456777777766541 122221 2345688888888765 566778888888888874 57778875556666888888
Q ss_pred cCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEe
Q 001281 673 EGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQW 752 (1108)
Q Consensus 673 ~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 752 (1108)
.+|. +.++. ...+..++.|++|+|+.
T Consensus 133 ~~N~-I~sv~-----------------------------------------------------se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 133 RHNL-ISSVT-----------------------------------------------------SEELSALPALRSLDLSR 158 (873)
T ss_pred eccc-ccccc-----------------------------------------------------HHHHHhHhhhhhhhhhh
Confidence 7765 33221 11233446677788887
Q ss_pred cCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEE
Q 001281 753 GSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLT 831 (1108)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 831 (1108)
|....... ..+..-.++++|++++|.++.+...-++ .+.+|..|.|++|.+....+ .|..||+|+.|+
T Consensus 159 N~is~i~~----------~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 159 NLISEIPK----------PSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred chhhcccC----------CCCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 76432221 2244457899999999998887654443 46799999999998865444 578899999999
Q ss_pred ecCCCCceee-CcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCCCCCCccEE
Q 001281 832 IKGMTRLKSI-GSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPELLPSLEIL 910 (1108)
Q Consensus 832 L~~~~~l~~i-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L 910 (1108)
|..|. ++.+ +..| .++++|+.|.+... .+.....+.+..+.++++|++.. +++. .+.
T Consensus 228 LnrN~-irive~ltF------qgL~Sl~nlklqrN----~I~kL~DG~Fy~l~kme~l~L~~-N~l~-~vn--------- 285 (873)
T KOG4194|consen 228 LNRNR-IRIVEGLTF------QGLPSLQNLKLQRN----DISKLDDGAFYGLEKMEHLNLET-NRLQ-AVN--------- 285 (873)
T ss_pred ccccc-eeeehhhhh------cCchhhhhhhhhhc----CcccccCcceeeecccceeeccc-chhh-hhh---------
Confidence 98876 4333 2222 34566666555441 11111223344455555555544 2332 111
Q ss_pred EEccCCCccccCCCCCcccEEEEeecCC--ccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEc
Q 001281 911 VISKCADLVVPFSSFPMLCRLEIEECKG--ITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTIS 988 (1108)
Q Consensus 911 ~l~~~~~l~~~~~~l~~L~~L~l~~c~~--l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 988 (1108)
..++..+.+|+.|++++|.. +....-..+++|+.|++++|.++.++ +.+|..++.|+.|+++
T Consensus 286 --------~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~--------~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 286 --------EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD--------EGSFRVLSQLEELNLS 349 (873)
T ss_pred --------cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC--------hhHHHHHHHhhhhccc
Confidence 13455567777777777752 23344556888999999999887764 3445578899999998
Q ss_pred cc--CCCcccccCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccc-cccCCCcceEecc
Q 001281 989 NV--LEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIE 1065 (1108)
Q Consensus 989 ~c--~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~ 1065 (1108)
.+ ..+....+.++.+|++|+|++|..- -. ++.-...|.++++|+.|.+. .|++.++|.. +.++++|+.|++.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls-~~--IEDaa~~f~gl~~LrkL~l~--gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELS-WC--IEDAAVAFNGLPSLRKLRLT--GNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEE-EE--Eecchhhhccchhhhheeec--CceeeecchhhhccCcccceecCC
Confidence 73 2344444678899999999988731 10 23344568889999999997 8899999984 4489999999996
Q ss_pred cccCCCCCcccCCCCCCCccEEeeec
Q 001281 1066 NSRALKSLPQEVMGNNAQLEKLFIKY 1091 (1108)
Q Consensus 1066 ~c~~l~~lp~~~l~~l~~L~~L~l~~ 1091 (1108)
+ |.|.++-+.+|..+ .|+.|.+..
T Consensus 425 ~-NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 425 D-NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred C-Ccceeecccccccc-hhhhhhhcc
Confidence 6 67888876688877 888888765
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=5.5e-25 Score=248.44 Aligned_cols=103 Identities=33% Similarity=0.467 Sum_probs=91.6
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
..+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|.+.|.+++++.+|++|+|.+ +.+..+|.++..+++|++|
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYL 119 (1081)
T ss_pred hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhccccc
Confidence 334445999999999999999999999999999999999999999999999999999987 5689999999999999999
Q ss_pred eecCCCCCCcCCccCCCCCCCCccC
Q 001281 671 DIEGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
++++|. ...+|.-+..++.+..+.
T Consensus 120 dlS~N~-f~~~Pl~i~~lt~~~~~~ 143 (1081)
T KOG0618|consen 120 DLSFNH-FGPIPLVIEVLTAEEELA 143 (1081)
T ss_pred ccchhc-cCCCchhHHhhhHHHHHh
Confidence 999998 778888888777776664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.8e-21 Score=249.36 Aligned_cols=239 Identities=17% Similarity=0.249 Sum_probs=129.9
Q ss_pred cCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCcc
Q 001281 801 FSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLL 879 (1108)
Q Consensus 801 l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 879 (1108)
+++|+.|+|++|.....+| .++.+++|+.|++++|..++.+|... .+++|+.|.+.+|..+..++
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-------~l~sL~~L~Lsgc~~L~~~p------- 721 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-------NLKSLYRLNLSGCSRLKSFP------- 721 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-------CCCCCCEEeCCCCCCccccc-------
Confidence 4678888888877666666 46777788888887777776665321 35667777777665544332
Q ss_pred ccCCcccEEeecCCCCCCCCCCC--CCCCccEEEEccCCCccc----------cCCCCCcccEEEEeecCCccc--cCCC
Q 001281 880 AGFSSLRELSILKCPKFSGKLPE--LLPSLEILVISKCADLVV----------PFSSFPMLCRLEIEECKGITC--STPI 945 (1108)
Q Consensus 880 ~~~~~L~~L~l~~c~~l~~~~p~--~l~~L~~L~l~~~~~l~~----------~~~~l~~L~~L~l~~c~~l~~--~~~~ 945 (1108)
...++|+.|++.++ .+. .+|. .+++|++|.+.+|..... ....+++|+.|++++|+.+.. ..+.
T Consensus 722 ~~~~nL~~L~L~~n-~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 722 DISTNISWLDLDET-AIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred cccCCcCeeecCCC-ccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 12346667776664 342 4554 245666666655432110 011234566666666553321 2334
Q ss_pred CCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCCCccEEEEeccCCccccccccCCc
Q 001281 946 DCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPE 1025 (1108)
Q Consensus 946 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p 1025 (1108)
++++|+.|+++++ ..+..+ |..+ .+++|+.|++++|..+..++ ...++|+.|++++|. ++.+|
T Consensus 800 ~L~~L~~L~Ls~C-------~~L~~L-P~~~-~L~sL~~L~Ls~c~~L~~~p-~~~~nL~~L~Ls~n~-------i~~iP 862 (1153)
T PLN03210 800 NLHKLEHLEIENC-------INLETL-PTGI-NLESLESLDLSGCSRLRTFP-DISTNISDLNLSRTG-------IEEVP 862 (1153)
T ss_pred CCCCCCEEECCCC-------CCcCee-CCCC-CccccCEEECCCCCcccccc-ccccccCEeECCCCC-------CccCh
Confidence 5555666655521 111111 1111 35556666666665555443 223455566665554 45555
Q ss_pred ccCCCCCCCcEeEeeccCccccccccccccCCCcceEecccccCCCCC
Q 001281 1026 QGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSL 1073 (1108)
Q Consensus 1026 ~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l 1073 (1108)
..+..+++|+.|+++ +|++++.+|.....+++|+.|++++|++|+.+
T Consensus 863 ~si~~l~~L~~L~L~-~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 863 WWIEKFSNLSFLDMN-GCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred HHHhcCCCCCEEECC-CCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 555566666666665 56666666555555566666666666555544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=2.6e-24 Score=243.09 Aligned_cols=111 Identities=22% Similarity=0.292 Sum_probs=90.1
Q ss_pred CCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcC
Q 001281 561 EVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSL 640 (1108)
Q Consensus 561 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L 640 (1108)
+.-+|.+|.+.++.. .-+|..+..+.+|+.|.++.|.|.++|.++.++.+|+||+|.+|.+..+|.++..+
T Consensus 43 ~~v~L~~l~lsnn~~---------~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQI---------SSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISEL 113 (1081)
T ss_pred heeeeEEeecccccc---------ccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhh
Confidence 344578887776654 12233466778999999999999999999999999999999999999999999999
Q ss_pred ccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcC
Q 001281 641 MHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGM 681 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~l 681 (1108)
.+|++||++.|. ....|..+..++.+..+..++|..+..+
T Consensus 114 knl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~l 153 (1081)
T KOG0618|consen 114 KNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRL 153 (1081)
T ss_pred hcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhh
Confidence 999999999964 6788888888888888888887434433
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=5e-25 Score=225.43 Aligned_cols=449 Identities=19% Similarity=0.214 Sum_probs=298.9
Q ss_pred hhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCcc
Q 001281 589 DMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLR 668 (1108)
Q Consensus 589 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 668 (1108)
+.+.++..|.||++++|.+.++|.+++.+..++.|+.++|++.++|+.++.+.+|..|+.++| ...++|++++.+..|.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLE 140 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhh
Confidence 346788899999999999999999999999999999999999999999999999999999995 5788999999999999
Q ss_pred EEeecCCCCCCcCCccCCCCCCCCccCceee--CCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCC
Q 001281 669 HLDIEGANSLEGMPYGMEKLKHLQTLSNFIV--GKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQ 746 (1108)
Q Consensus 669 ~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 746 (1108)
.|+..+|+ +.++|.+++.+.+|..|..... ...++..+ .++.|++|. -..+.-+..|..++.+.+|.
T Consensus 141 dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld---------~~~N~L~tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 141 DLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLD---------CNSNLLETLPPELGGLESLE 209 (565)
T ss_pred hhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcc---------cchhhhhcCChhhcchhhhH
Confidence 99988887 8889999988888877753221 22222223 366777665 22344566777888899999
Q ss_pred ceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCC
Q 001281 747 ALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGS 826 (1108)
Q Consensus 747 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 826 (1108)
.|++..|.. ..+..+..+..|++|++..|.+..+|..+.. .+++|..|||.+|++.+....+..+.+
T Consensus 210 ~LyL~~Nki------------~~lPef~gcs~L~Elh~g~N~i~~lpae~~~-~L~~l~vLDLRdNklke~Pde~clLrs 276 (565)
T KOG0472|consen 210 LLYLRRNKI------------RFLPEFPGCSLLKELHVGENQIEMLPAEHLK-HLNSLLVLDLRDNKLKEVPDEICLLRS 276 (565)
T ss_pred HHHhhhccc------------ccCCCCCccHHHHHHHhcccHHHhhHHHHhc-ccccceeeeccccccccCchHHHHhhh
Confidence 999987764 2344577788899999999999989987764 478999999999987555446888899
Q ss_pred ccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccc-cCCccccCCcccEEeecCCCCCCCCCCCCCC
Q 001281 827 LKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTK-ENGLLAGFSSLRELSILKCPKFSGKLPELLP 905 (1108)
Q Consensus 827 L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~ 905 (1108)
|+.|++++|. +...|.. ++.+ .|+.|.+.+.|--+.-... ..+...-+..|+. . ..|..++ .++
T Consensus 277 L~rLDlSNN~-is~Lp~s------Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-~-~~~dglS--~se--- 341 (565)
T KOG0472|consen 277 LERLDLSNND-ISSLPYS------LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-K-IKDDGLS--QSE--- 341 (565)
T ss_pred hhhhcccCCc-cccCCcc------cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-h-hccCCCC--CCc---
Confidence 9999998876 4444421 2333 4555555554321000000 0000001111111 0 0011111 000
Q ss_pred CccEEEEccCCCccccCC---CCCcccEEEEeecCCcccc----CCCCCCCccEEEEecCCcccccccCcccCCCCCCCC
Q 001281 906 SLEILVISKCADLVVPFS---SFPMLCRLEIEECKGITCS----TPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDS 978 (1108)
Q Consensus 906 ~L~~L~l~~~~~l~~~~~---~l~~L~~L~l~~c~~l~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 978 (1108)
.=.-+........++ ..-+.+.|++++-.....+ ....-.-....+++.|++..+ |..+..
T Consensus 342 ---~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el---------Pk~L~~ 409 (565)
T KOG0472|consen 342 ---GGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL---------PKRLVE 409 (565)
T ss_pred ---ccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh---------hhhhHH
Confidence 000000000001111 1234455555443211110 011112245666676665544 222223
Q ss_pred CCCCcEEEEcccCCCcccc--cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccC
Q 001281 979 KSLPTSVTISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLM 1056 (1108)
Q Consensus 979 ~~~L~~L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l 1056 (1108)
+..+.+.-+...+.+..++ +..+++|..|++++|. +..+|..+..+..||+|+|+ .|....+|.....+
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-------Ln~LP~e~~~lv~Lq~LnlS--~NrFr~lP~~~y~l 480 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-------LNDLPEEMGSLVRLQTLNLS--FNRFRMLPECLYEL 480 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-------hhhcchhhhhhhhhheeccc--ccccccchHHHhhH
Confidence 4444444444455666665 5789999999999998 88899999999999999998 78899999877655
Q ss_pred CCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCcccccc
Q 001281 1057 NNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKKQ 1100 (1108)
Q Consensus 1057 ~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~~ 1100 (1108)
-.|+.+-.++ +.+.+++++++.++.+|..|++.+++ ++.+|.
T Consensus 481 q~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp 522 (565)
T KOG0472|consen 481 QTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPP 522 (565)
T ss_pred HHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCc-hhhCCh
Confidence 5666665544 78999999889999999999999874 666653
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.2e-23 Score=221.89 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=62.9
Q ss_pred CCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceEecccccCCCCCcccCC
Q 001281 999 QGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQEVM 1078 (1108)
Q Consensus 999 ~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l 1078 (1108)
+.+.+|+.+...+|. ++.+|+++..+..|+.|.++ ||.+..+|+.+..++-|+.|++..++++..-|...-
T Consensus 313 GKL~~Levf~aanN~-------LElVPEglcRC~kL~kL~L~--~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNK-------LELVPEGLCRCVKLQKLKLD--HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred hhhhhhHHHHhhccc-------cccCchhhhhhHHHHHhccc--ccceeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 344556666666666 78899999999999999997 999999999988899999999999999976554211
Q ss_pred CCCCCccEEeee
Q 001281 1079 GNNAQLEKLFIK 1090 (1108)
Q Consensus 1079 ~~l~~L~~L~l~ 1090 (1108)
.-++|+.-+|.
T Consensus 384 -a~~~lefYNID 394 (1255)
T KOG0444|consen 384 -ARKKLEFYNID 394 (1255)
T ss_pred -hhhcceeeecc
Confidence 11355555544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=7.7e-18 Score=173.17 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=89.7
Q ss_pred hhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeC-ccccccchh-hhcCccCcEeeecCCcCCcccchh
Q 001281 584 NVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAG-TQIRSLPES-TSSLMHLRVLILRDCSRLTRLPSK 660 (1108)
Q Consensus 584 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~-~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~ 660 (1108)
..+++.+|+.+++||+|||++|.|+.| |++|.++..|-.|-+.+ |+|+.+|+. |++|..||.|.+.-|.........
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 456778899999999999999999988 88898888887776655 889999875 788999999998887655555667
Q ss_pred ccCCCCccEEeecCCCCCCcCCc-cCCCCCCCCccC
Q 001281 661 MWNLINLRHLDIEGANSLEGMPY-GMEKLKHLQTLS 695 (1108)
Q Consensus 661 i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 695 (1108)
+..|++|..|.+.+|. +..++. .+..+.+++++.
T Consensus 160 l~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HHHhhhcchhcccchh-hhhhccccccchhccchHh
Confidence 8889999999988887 677776 477777777775
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.6e-14 Score=169.26 Aligned_cols=255 Identities=16% Similarity=0.101 Sum_probs=158.1
Q ss_pred CCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCC
Q 001281 743 QNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLS 822 (1108)
Q Consensus 743 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~ 822 (1108)
..-..|+++.+.... .|. .+ .++|+.|.+.+|.+..+|.. +++|++|+|++|.+. .+|.+
T Consensus 201 ~~~~~LdLs~~~Lts-LP~----------~l--~~~L~~L~L~~N~Lt~LP~l-----p~~Lk~LdLs~N~Lt-sLP~l- 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPD----------CL--PAHITTLVIPDNNLTSLPAL-----PPELRTLEVSGNQLT-SLPVL- 260 (788)
T ss_pred CCCcEEEcCCCCCCc-CCc----------ch--hcCCCEEEccCCcCCCCCCC-----CCCCcEEEecCCccC-cccCc-
Confidence 456677887765432 111 12 24788888888888888752 368888888888665 44543
Q ss_pred CCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC
Q 001281 823 MLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE 902 (1108)
Q Consensus 823 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 902 (1108)
.++|+.|++.+|. +..++. .+++|+.|.+.++ .++.+. ..+++|+.|++++| +++ .+|.
T Consensus 261 -p~sL~~L~Ls~N~-L~~Lp~---------lp~~L~~L~Ls~N-~Lt~LP-------~~p~~L~~LdLS~N-~L~-~Lp~ 319 (788)
T PRK15387 261 -PPGLLELSIFSNP-LTHLPA---------LPSGLCKLWIFGN-QLTSLP-------VLPPGLQELSVSDN-QLA-SLPA 319 (788)
T ss_pred -ccccceeeccCCc-hhhhhh---------chhhcCEEECcCC-cccccc-------ccccccceeECCCC-ccc-cCCC
Confidence 4688888888775 444431 2456777777663 222221 23467888888874 665 4666
Q ss_pred CCCCccEEEEccCCCccccCCCC-CcccEEEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCC
Q 001281 903 LLPSLEILVISKCADLVVPFSSF-PMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSL 981 (1108)
Q Consensus 903 ~l~~L~~L~l~~~~~l~~~~~~l-~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 981 (1108)
...+|+.|++++|.... ++.+ ++|+.|++++|.....+. ..++|+.|++++|.+..+.. ..++
T Consensus 320 lp~~L~~L~Ls~N~L~~--LP~lp~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L~~LP~------------l~~~ 383 (788)
T PRK15387 320 LPSELCKLWAYNNQLTS--LPTLPSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPA------------LPSG 383 (788)
T ss_pred CcccccccccccCcccc--ccccccccceEecCCCccCCCCC--CCcccceehhhccccccCcc------------cccc
Confidence 55677788887776532 3333 367888887776433222 24567777777776654321 2346
Q ss_pred CcEEEEcccCCCcccccCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcce
Q 001281 982 PTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRY 1061 (1108)
Q Consensus 982 L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~ 1061 (1108)
|+.|+++++ .++.+| ...++|+.|++++|. +..+|... .+|+.|+++ .|.++.+|..+..+++|+.
T Consensus 384 L~~LdLs~N-~Lt~LP-~l~s~L~~LdLS~N~-------LssIP~l~---~~L~~L~Ls--~NqLt~LP~sl~~L~~L~~ 449 (788)
T PRK15387 384 LKELIVSGN-RLTSLP-VLPSELKELMVSGNR-------LTSLPMLP---SGLLSLSVY--RNQLTRLPESLIHLSSETT 449 (788)
T ss_pred cceEEecCC-cccCCC-CcccCCCEEEccCCc-------CCCCCcch---hhhhhhhhc--cCcccccChHHhhccCCCe
Confidence 777777664 344444 224567777777776 45555432 356677776 5677777776666777777
Q ss_pred Eeccccc
Q 001281 1062 LKIENSR 1068 (1108)
Q Consensus 1062 L~l~~c~ 1068 (1108)
|+|++++
T Consensus 450 LdLs~N~ 456 (788)
T PRK15387 450 VNLEGNP 456 (788)
T ss_pred EECCCCC
Confidence 7777643
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=6.8e-14 Score=165.69 Aligned_cols=79 Identities=27% Similarity=0.307 Sum_probs=62.3
Q ss_pred CcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecC
Q 001281 595 KKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEG 674 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 674 (1108)
..-.+|+|+++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .++.+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446688999999999998776 4899999999999998863 578899999886 46677753 46788888888
Q ss_pred CCCCCcCCc
Q 001281 675 ANSLEGMPY 683 (1108)
Q Consensus 675 ~~~~~~lp~ 683 (1108)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 86 666654
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1.3e-11 Score=158.54 Aligned_cols=292 Identities=15% Similarity=0.185 Sum_probs=183.4
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC-CCCHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD-EFDVLSISMA 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~ 261 (1108)
...+|-|+.-.+.+.+ . ...+++.|+|++|.||||++..+... ++.++|+++.. ..+...+...
T Consensus 13 ~~~~~~R~rl~~~l~~----~----~~~~~~~v~apaG~GKTtl~~~~~~~-------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKLSG----A----NNYRLVLVTSPAGYGKTTLISQWAAG-------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHHhc----c----cCCCeEEEECCCCCCHHHHHHHHHHh-------CCCeEEEecCcccCCHHHHHHH
Confidence 3456677655555432 1 23689999999999999999998853 23689999964 4466666677
Q ss_pred HHHHhcCCCCC-------------cccHHHHHHHHHHHhC--CceEEEEEeCCCCCChhhHHHHHhhhc-cCCCCcEEEE
Q 001281 262 LLESITCKPCD-------------LKALNEVQVQLQKALD--GKKFLLVLDDVWNENYSLWEDLKAPFL-AAAPNSKIIV 325 (1108)
Q Consensus 262 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iiv 325 (1108)
++..++..... ..+.......+...+. +.+++||+||+...+......+...+. ....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77776422111 0122233333333332 679999999997654344443444433 3456778889
Q ss_pred ecCchhhhh--hcc-ccceeeCC----CCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhh
Q 001281 326 TTRHSHVAS--TMG-SVEHYNLS----LLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLL 398 (1108)
Q Consensus 326 TtR~~~v~~--~~~-~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 398 (1108)
|||...... ... ......+. +|+.+|+.++|........+ .+...+|.+.|+|.|+++..++..+
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~--------~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE--------AAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC--------HHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999742111 111 11234454 89999999999876543221 1567899999999999999988777
Q ss_pred cCCCChhHHHHHHhhccCCCC--CCCChhHHHHH-hhhcCChhHHHHHhHhcccCCCceechHHHHHHHHHcCCccCCCC
Q 001281 399 RTKHGDNAWEDILNSNIWDLP--EQSGVQPVLKL-SYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRN 475 (1108)
Q Consensus 399 ~~~~~~~~w~~~l~~~~~~~~--~~~~i~~~l~~-sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~ 475 (1108)
+...... .... +.+. ....+...+.- .|+.||++.+..+...|+++ .++.+.+-.. ...
T Consensus 230 ~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~~--- 291 (903)
T PRK04841 230 RQNNSSL--HDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TGE--- 291 (903)
T ss_pred hhCCCch--hhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cCC---
Confidence 5442210 0001 1111 12345555443 48999999999999999996 3333322211 111
Q ss_pred chhHHHHHHHHHHHHHhCcccc-ccCCCCCeEEEchhHHHHHHHhh
Q 001281 476 NKQLEDWGSECFHDLVSRSIFQ-QSSGDGSKFVMHDLVHDLAQLVS 520 (1108)
Q Consensus 476 ~~~~~~~~~~~~~~L~~~~li~-~~~~~~~~~~~H~lv~~~a~~~~ 520 (1108)
+.+...+++|.+++++. +.+.+...|+.|++++++.+...
T Consensus 292 -----~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 -----ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -----CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 12467899999999865 34444457999999999998764
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=8.4e-13 Score=157.87 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=63.8
Q ss_pred CCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccc
Q 001281 779 LKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLE 858 (1108)
Q Consensus 779 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 858 (1108)
...|++.++....+|..+. ++|+.|+|++|.+.. +|. ...++|+.|++++|. ++.+|.. .+++|+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N~Lts-LP~-~l~~nL~~L~Ls~N~-LtsLP~~--------l~~~L~ 244 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP----EQITTLILDNNELKS-LPE-NLQGNIKTLYANSNQ-LTSIPAT--------LPDTIQ 244 (754)
T ss_pred ceEEEeCCCCcCcCCcccc----cCCcEEEecCCCCCc-CCh-hhccCCCEEECCCCc-cccCChh--------hhcccc
Confidence 3455555555555554432 355666666655432 332 112456666665543 3333321 123445
Q ss_pred eEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCCCC-CCccEEEEccCCCccccCCCCCcccEEEEeecC
Q 001281 859 TLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPELL-PSLEILVISKCADLVVPFSSFPMLCRLEIEECK 937 (1108)
Q Consensus 859 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~c~ 937 (1108)
.|.++++. +..++ . .-..+|+.|++++ ++++ .+|..+ ++|+.|++++|.....+..-.++|+.|++++|.
T Consensus 245 ~L~Ls~N~-L~~LP----~--~l~s~L~~L~Ls~-N~L~-~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 245 EMELSINR-ITELP----E--RLPSALQSLDLFH-NKIS-CLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS 315 (754)
T ss_pred EEECcCCc-cCcCC----h--hHhCCCCEEECcC-CccC-ccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCc
Confidence 55554432 11111 0 1123677888775 4665 566543 467777777765332111112345555555554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=1.6e-12 Score=155.44 Aligned_cols=159 Identities=20% Similarity=0.277 Sum_probs=108.7
Q ss_pred CcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecC
Q 001281 595 KKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEG 674 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 674 (1108)
.+..+|++++++++.+|..+. ++|+.|+|++|+|+.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence 457889999999999998774 589999999999999998775 589999999864 778887654 4799999998
Q ss_pred CCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecC
Q 001281 675 ANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGS 754 (1108)
Q Consensus 675 ~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 754 (1108)
|. +..+|..+. ++ |+.|+++.|.
T Consensus 251 N~-L~~LP~~l~--s~------------------------------------------------------L~~L~Ls~N~ 273 (754)
T PRK15370 251 NR-ITELPERLP--SA------------------------------------------------------LQSLDLFHNK 273 (754)
T ss_pred Cc-cCcCChhHh--CC------------------------------------------------------CCEEECcCCc
Confidence 87 666665432 12 2233333222
Q ss_pred CCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecC
Q 001281 755 QFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKG 834 (1108)
Q Consensus 755 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 834 (1108)
... .+ ..+ +++|+.|++++|....+|..+. ++|+.|++++|.+.. +|. ...++|+.|++++
T Consensus 274 L~~-LP----------~~l--~~sL~~L~Ls~N~Lt~LP~~lp----~sL~~L~Ls~N~Lt~-LP~-~l~~sL~~L~Ls~ 334 (754)
T PRK15370 274 ISC-LP----------ENL--PEELRYLSVYDNSIRTLPAHLP----SGITHLNVQSNSLTA-LPE-TLPPGLKTLEAGE 334 (754)
T ss_pred cCc-cc----------ccc--CCCCcEEECCCCccccCcccch----hhHHHHHhcCCcccc-CCc-cccccceeccccC
Confidence 110 00 001 2367777777777777775442 478888888887754 342 1236788888887
Q ss_pred CC
Q 001281 835 MT 836 (1108)
Q Consensus 835 ~~ 836 (1108)
|.
T Consensus 335 N~ 336 (754)
T PRK15370 335 NA 336 (754)
T ss_pred Cc
Confidence 75
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=5.7e-14 Score=145.06 Aligned_cols=277 Identities=17% Similarity=0.142 Sum_probs=178.5
Q ss_pred ccccccceeEEEeecCCCCcccccccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecC-ccccccC
Q 001281 533 LSRRFERVRHSSYTRGHFDSKIRFESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEG-YYVTQLP 611 (1108)
Q Consensus 533 ~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp 611 (1108)
+...|....-+.+..+.+.. ....+|..+++||.+.+.++.+ ..+-++.|.+++.|-.|-+-+ |+|+.+|
T Consensus 62 P~~LP~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~I--------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNI--------SFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred cccCCCcceEEEeccCCccc-CChhhccchhhhceecccccch--------hhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 34455555566666555433 3457788999999999988765 567788999999888777766 8899997
Q ss_pred c-chhcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCcccch-hccCCCCccEEeecCCCCCCc--------
Q 001281 612 N-SIKELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLDIEGANSLEG-------- 680 (1108)
Q Consensus 612 ~-~i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~-------- 680 (1108)
. .|++|..|+-|.+.-|++.-++ ..+..|++|..|.+.+| .+..++. .+..+..++++.+..|..+..
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 4 6899999999999999998665 56889999999999995 5777776 788999999999887762211
Q ss_pred ----CCccCCCCCCCC--ccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecC
Q 001281 681 ----MPYGMEKLKHLQ--TLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGS 754 (1108)
Q Consensus 681 ----lp~~i~~L~~L~--~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 754 (1108)
.|..++...-.. .|....+.......+.. .++.+...+. ...+.........|..+++|+.|+|++|.
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~----~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLS----SEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhc----cccCcCCcChHHHHhhcccceEeccCCCc
Confidence 111111111111 01111111111111110 0111110000 01111111122347788889999998876
Q ss_pred CCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEec
Q 001281 755 QFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIK 833 (1108)
Q Consensus 755 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 833 (1108)
....... ++.....+++|.+..|++..+...++. .+++|+.|+|.+|+++...| .|..+..|..|.+-
T Consensus 286 i~~i~~~----------aFe~~a~l~eL~L~~N~l~~v~~~~f~-~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 286 ITRIEDG----------AFEGAAELQELYLTRNKLEFVSSGMFQ-GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cchhhhh----------hhcchhhhhhhhcCcchHHHHHHHhhh-ccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 5433222 255567788888888887777665554 36788888999888877666 47778888888887
Q ss_pred CCC
Q 001281 834 GMT 836 (1108)
Q Consensus 834 ~~~ 836 (1108)
.|+
T Consensus 355 ~Np 357 (498)
T KOG4237|consen 355 SNP 357 (498)
T ss_pred cCc
Confidence 654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=4.8e-14 Score=128.27 Aligned_cols=129 Identities=28% Similarity=0.396 Sum_probs=102.5
Q ss_pred cccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhh
Q 001281 558 SLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPEST 637 (1108)
Q Consensus 558 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i 637 (1108)
.+..+.+...|.+.++.. ...+..+..+++|++|++++|.++++|.+++.++.||.|+++-|++..+|..|
T Consensus 28 gLf~~s~ITrLtLSHNKl---------~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKL---------TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cccchhhhhhhhcccCce---------eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 344444555555544432 23344567888999999999999999999999999999999999998999999
Q ss_pred hcCccCcEeeecCCcCC-cccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCccCc
Q 001281 638 SSLMHLRVLILRDCSRL-TRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLSN 696 (1108)
Q Consensus 638 ~~L~~L~~L~l~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 696 (1108)
+.++-|++||+.+|+.. ..+|..|..|+.|+-|++++|. ...+|.++++|++||.|..
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSL 157 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEee
Confidence 99999999999887643 4688888889999999999888 7788999999999998863
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=2.8e-12 Score=155.83 Aligned_cols=100 Identities=35% Similarity=0.520 Sum_probs=61.6
Q ss_pred CcccEEEecCcc--ccccCc-chhcCCCCcEEEeeCc-cccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 595 KKLRVLSLEGYY--VTQLPN-SIKELKLLRYLNVAGT-QIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 595 ~~Lr~L~L~~~~--i~~lp~-~i~~l~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+.|++|-+.+|. +..++. .|..++.|++|||++| .+.++|.+|++|.+||+|++++ +.+..+|..+++|++|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhhee
Confidence 356666666664 445533 3556677777777654 4556677777777777777766 3466677777777777777
Q ss_pred eecCCCCCCcCCccCCCCCCCCccC
Q 001281 671 DIEGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
++..+..+..+|..+..|++|++|.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred ccccccccccccchhhhcccccEEE
Confidence 7666654444444444466666654
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.21 E-value=2.9e-09 Score=122.26 Aligned_cols=299 Identities=13% Similarity=0.068 Sum_probs=175.2
Q ss_pred cCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHH
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 261 (1108)
.+..++||+++++++...+...-. +.....+.|+|++|+|||++++.++++..... ..-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999998844211 12245678999999999999999998754322 1234567777777788889999
Q ss_pred HHHHhcCCCC--CcccHHHHHHHHHHHhC--CceEEEEEeCCCCCC----hhhHHHHHhhhccCCCCcE--EEEecCchh
Q 001281 262 LLESITCKPC--DLKALNEVQVQLQKALD--GKKFLLVLDDVWNEN----YSLWEDLKAPFLAAAPNSK--IIVTTRHSH 331 (1108)
Q Consensus 262 i~~~l~~~~~--~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTtR~~~ 331 (1108)
++.++..... ...+.++....+.+.+. +++.+||+|+++.-. .+.+..+...+.. ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 9999875221 22345666666777664 457899999996532 1223333332221 22333 566665543
Q ss_pred hhhhcc-------ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhc----CCchHHHHHHHhhh--
Q 001281 332 VASTMG-------SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKC----RGLPLAAKTLGGLL-- 398 (1108)
Q Consensus 332 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c----~glPLai~~~~~~l-- 398 (1108)
+..... ....+.+++++.++..+++..++......... .++..+.|++.+ |..+.|+.++-...
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~---~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVV---DDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCC---CHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 332221 12467899999999999998876322111111 113344444444 55777777654322
Q ss_pred c---CC--CChhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHHHHhHhcccCC--CceechHHHHHH--HHHcCC
Q 001281 399 R---TK--HGDNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKRCFAYCAIFPK--DYELKEKELVFL--WMAEGI 469 (1108)
Q Consensus 399 ~---~~--~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~--~~~i~~~~li~~--w~a~g~ 469 (1108)
+ .. -+.+.+..+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 1 11 1244454444432 1223455688999998877666553321 133455555432 233222
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhCcccccc
Q 001281 470 IQQPRNNKQLEDWGSECFHDLVSRSIFQQS 499 (1108)
Q Consensus 470 i~~~~~~~~~~~~~~~~~~~L~~~~li~~~ 499 (1108)
-..+. .......|+.+|...++|...
T Consensus 333 ~~~~~----~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 GYEPR----THTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCCcC----cHHHHHHHHHHHHhcCCeEEE
Confidence 11111 124456799999999999753
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.18 E-value=4.5e-13 Score=122.05 Aligned_cols=85 Identities=36% Similarity=0.438 Sum_probs=69.2
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+-.+.+...|.|++|.++.+|..|..+.+|+.|++++|+|+++|.+|+.|++|+.|+++-| .+..+|..||.++-|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 3456677788888888888888888888888888888888888888888888888888874 467788888888888888
Q ss_pred eecCCC
Q 001281 671 DIEGAN 676 (1108)
Q Consensus 671 ~l~~~~ 676 (1108)
|+..|+
T Consensus 108 dltynn 113 (264)
T KOG0617|consen 108 DLTYNN 113 (264)
T ss_pred hccccc
Confidence 888776
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.12 E-value=4.9e-09 Score=113.51 Aligned_cols=182 Identities=19% Similarity=0.173 Sum_probs=116.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH----H
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQ----K 285 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~ 285 (1108)
.+++.|+|++|+||||+++.+++...... . ..+|+ +....+..+++..++..++.+.... +.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~--~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQER--V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCC--e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHH
Confidence 35899999999999999999998754221 1 22333 3334577788899998887654332 2222223333 2
Q ss_pred H-hCCceEEEEEeCCCCCChhhHHHHHhhhcc---CCCCcEEEEecCchhhhhhcc----------ccceeeCCCCChhh
Q 001281 286 A-LDGKKFLLVLDDVWNENYSLWEDLKAPFLA---AAPNSKIIVTTRHSHVASTMG----------SVEHYNLSLLSDDD 351 (1108)
Q Consensus 286 ~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~ 351 (1108)
. ..+++++||+||+|.-....++.+...... ......|++|.... ....+. ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 367889999999988766667766533221 12223445555432 211111 12457899999999
Q ss_pred HHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhh
Q 001281 352 CWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLL 398 (1108)
Q Consensus 352 ~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 398 (1108)
..+++...+........ ....++..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~-~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDA-PVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCC-CCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999877643321101 11233788999999999999999888776
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.10 E-value=1.2e-09 Score=121.08 Aligned_cols=277 Identities=14% Similarity=0.134 Sum_probs=145.3
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+|+|+++.++.+..++......+.....+.++|++|+||||+|+.+++.... .+ .++..+ .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~---~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV---NI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC---Ce---EEEecc-cccChHHHHHH
Confidence 457999999999988777532211233567889999999999999999987543 11 111111 11111222223
Q ss_pred HHHhcCCCC-CcccH----HHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhhhcc
Q 001281 263 LESITCKPC-DLKAL----NEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVASTMG 337 (1108)
Q Consensus 263 ~~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 337 (1108)
+..+..... -.++. ......+...+.+.+..+|+|+..+... +... ..+.+-|..|++...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~---l~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLD---LPPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeec---CCCceEEeecCCcccCCHHHH
Confidence 332221100 00000 0111122333333344444444322100 0000 112345556777544333221
Q ss_pred --ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCChhHHHHHHhhcc
Q 001281 338 --SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWEDILNSNI 415 (1108)
Q Consensus 338 --~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~ 415 (1108)
....+.++++++++..+++.+.+...... +.++....|++.|+|.|-.+..+...+. .|......
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-----~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~-- 235 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVE-----IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD-- 235 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--
Confidence 12468999999999999999887543221 2226789999999999965554444321 12211100
Q ss_pred CCCC--CCCChhHHHHHhhhcCChhHHHHHh-HhcccCCCceechHHHHHHHHHcCCccCCCCchhHHHHHHHHHH-HHH
Q 001281 416 WDLP--EQSGVQPVLKLSYHYLPSHLKRCFA-YCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDWGSECFH-DLV 491 (1108)
Q Consensus 416 ~~~~--~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~ 491 (1108)
..+. .-......+...|..|++..+..+. ....|+.+ .+..+.+.... | . . .+.++..++ .|+
T Consensus 236 ~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---~--~----~~~~~~~~e~~Li 302 (328)
T PRK00080 236 GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---E--E----RDTIEDVYEPYLI 302 (328)
T ss_pred CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---C--C----cchHHHHhhHHHH
Confidence 0010 0012233455667888888777775 66777655 45555543322 1 1 1 233444555 799
Q ss_pred hCccccccC
Q 001281 492 SRSIFQQSS 500 (1108)
Q Consensus 492 ~~~li~~~~ 500 (1108)
+.+|++...
T Consensus 303 ~~~li~~~~ 311 (328)
T PRK00080 303 QQGFIQRTP 311 (328)
T ss_pred HcCCcccCC
Confidence 999997554
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.08 E-value=3.1e-08 Score=112.55 Aligned_cols=303 Identities=14% Similarity=0.054 Sum_probs=169.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccc---cceeEEEEeCCCCCHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIK---FDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~ 259 (1108)
+..++||++++++|...+...-. +.....+.|+|++|+|||++++.+++........ --..+|+++....+...++
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~-~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR-GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 45799999999999999864211 1224578999999999999999999864211101 0245678887777788899
Q ss_pred HHHHHHhc---CCCC-CcccHHHHHHHHHHHh--CCceEEEEEeCCCCCC---hhhHHHHHhhh-ccCC--CCcEEEEec
Q 001281 260 MALLESIT---CKPC-DLKALNEVQVQLQKAL--DGKKFLLVLDDVWNEN---YSLWEDLKAPF-LAAA--PNSKIIVTT 327 (1108)
Q Consensus 260 ~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iivTt 327 (1108)
..+++++. ...+ ...+..+....+.+.+ .+++++||||+++.-. .+....+.... .... ....+|.++
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999884 2211 1223444555555555 3568999999995431 11122222211 1111 233455555
Q ss_pred Cchhhhhhcc-------ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHH-HHHHHhhh-
Q 001281 328 RHSHVASTMG-------SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLA-AKTLGGLL- 398 (1108)
Q Consensus 328 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~~~~l- 398 (1108)
........+. ....+.+++++.++..+++..++..........+-.-+...+++....|.|-. +..+-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4433221111 12468899999999999998886421111111100003344566666787743 33322211
Q ss_pred -c---CC--CChhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHHHHhHhcccC--CCceechHHHHHHHH--HcC
Q 001281 399 -R---TK--HGDNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKRCFAYCAIFP--KDYELKEKELVFLWM--AEG 468 (1108)
Q Consensus 399 -~---~~--~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~i~~~~li~~w~--a~g 468 (1108)
+ +. -+.+..+.+.+.. -.....-++..||.+.+..+..++..- ++..+....+...+- ++.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~ 323 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCED 323 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh
Confidence 1 11 1233333333221 123344567899998886666554221 334455566555332 222
Q ss_pred CccCCCCchhHHHHHHHHHHHHHhCcccccc
Q 001281 469 IIQQPRNNKQLEDWGSECFHDLVSRSIFQQS 499 (1108)
Q Consensus 469 ~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~ 499 (1108)
+-.. .........++..|...|+|...
T Consensus 324 ~~~~----~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 324 IGVD----PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred cCCC----CCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111 12245677889999999999764
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.07 E-value=3.3e-09 Score=117.01 Aligned_cols=276 Identities=14% Similarity=0.082 Sum_probs=147.5
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
.+|||+++.++++..++............+.++|++|+|||+||+.+++.... .+ ..+..+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~---~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV---NL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CE---EEeccchhcCch-hHHHHH
Confidence 46999999999998888643222233556889999999999999999986532 11 111111111111 122222
Q ss_pred HHhcCCCC-CcccH----HHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhhhcc-
Q 001281 264 ESITCKPC-DLKAL----NEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVASTMG- 337 (1108)
Q Consensus 264 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~- 337 (1108)
..++.... -.++. ......+...+.+.+..+|+|+.... ..|. .. ..+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~---~~---~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVR---LD---LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--ccee---ec---CCCeEEEEecCCccccCHHHHh
Confidence 23322110 00000 11223344445555555666655332 1111 11 122455566777644433221
Q ss_pred -ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCChhHHHHHHhhccC
Q 001281 338 -SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWEDILNSNIW 416 (1108)
Q Consensus 338 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~ 416 (1108)
....+.+++++.++..+++...+...... +.++....|++.|+|.|-.+..++..+ |.........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~-----~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~ 215 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE-----IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQK 215 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC-----cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCC
Confidence 12457899999999999999887532221 222677899999999997665555432 1111000000
Q ss_pred CCC--CCCChhHHHHHhhhcCChhHHHHHh-HhcccCCCceechHHHHHHHHHcCCccCCCCchhHHHHHHHHHH-HHHh
Q 001281 417 DLP--EQSGVQPVLKLSYHYLPSHLKRCFA-YCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDWGSECFH-DLVS 492 (1108)
Q Consensus 417 ~~~--~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~ 492 (1108)
... .-......+...|..++++.+..+. .++.+..+ .+..+.+.... |. ....++..++ .|++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQ 282 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHH
Confidence 000 0011222245567888888877666 55667543 34444433322 11 1234566677 6999
Q ss_pred CccccccC
Q 001281 493 RSIFQQSS 500 (1108)
Q Consensus 493 ~~li~~~~ 500 (1108)
++||+...
T Consensus 283 ~~li~~~~ 290 (305)
T TIGR00635 283 IGFLQRTP 290 (305)
T ss_pred cCCcccCC
Confidence 99997544
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.04 E-value=8.2e-10 Score=117.23 Aligned_cols=195 Identities=18% Similarity=0.198 Sum_probs=100.7
Q ss_pred eeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHH----
Q 001281 186 VYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMA---- 261 (1108)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~---- 261 (1108)
|+||++++++|.+++..+. .+.+.|+|+.|+|||+|++.+.+.....+ + .++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~~-----~~~~~l~G~rg~GKTsLl~~~~~~~~~~~--~-~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP-----SQHILLYGPRGSGKTSLLKEFINELKEKG--Y-KVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-------SSEEEEEESTTSSHHHHHHHHHHHCT--E--E-CCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc-----CcEEEEEcCCcCCHHHHHHHHHHHhhhcC--C-cEEEEecccchhhhHHHHHHHHH
Confidence 7999999999999886542 46899999999999999999998653221 2 3444444333322211111
Q ss_pred ---------HHHHhcCCCC------CcccHHHHHHHHHHHh--CCceEEEEEeCCCCCC------hhhHHHHHhhhcc--
Q 001281 262 ---------LLESITCKPC------DLKALNEVQVQLQKAL--DGKKFLLVLDDVWNEN------YSLWEDLKAPFLA-- 316 (1108)
Q Consensus 262 ---------i~~~l~~~~~------~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~-- 316 (1108)
+...+..... ...........+.+.+ .+++++||+||+..-. ......+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 1111111110 0111122222333333 2345999999984432 1112233333333
Q ss_pred -CCCCcEEEEecCchhhhhh--------ccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc
Q 001281 317 -AAPNSKIIVTTRHSHVAST--------MGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL 387 (1108)
Q Consensus 317 -~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 387 (1108)
..+.+.|+++|. ..+... .+....+.+++++.+++++++...+... . .+ ...++..++|...+||+
T Consensus 153 ~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~--~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 153 SQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I--KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp --TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC----------HHHHHHHHHHHTT-
T ss_pred ccCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h--cc-cCCHHHHHHHHHHhCCC
Confidence 333344444444 333322 1223459999999999999999865433 1 11 11236679999999999
Q ss_pred hHHHHH
Q 001281 388 PLAAKT 393 (1108)
Q Consensus 388 PLai~~ 393 (1108)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998864
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.99 E-value=3.9e-08 Score=113.38 Aligned_cols=289 Identities=19% Similarity=0.219 Sum_probs=183.1
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCC
Q 001281 194 AKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE-FDVLSISMALLESITCKPCD 272 (1108)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~ 272 (1108)
.++.+.|... ...+++.|..++|.||||++.+...... .-..+.|.++++. .+...+..-++..++.-.+.
T Consensus 25 ~rL~~~L~~~----~~~RL~li~APAGfGKttl~aq~~~~~~----~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA----NDYRLILISAPAGFGKTTLLAQWRELAA----DGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC----CCceEEEEeCCCCCcHHHHHHHHHHhcC----cccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 4455555433 2379999999999999999999986222 2346899999854 56778888888888743221
Q ss_pred c-------------ccHHHHHHHHHHHhC--CceEEEEEeCCCCCChhhHHH-HHhhhccCCCCcEEEEecCchhhhhh-
Q 001281 273 L-------------KALNEVQVQLQKALD--GKKFLLVLDDVWNENYSLWED-LKAPFLAAAPNSKIIVTTRHSHVAST- 335 (1108)
Q Consensus 273 ~-------------~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivTtR~~~v~~~- 335 (1108)
. .+...+...+...+. .+++.+||||..-........ +...+.....+-.+|||||...-...
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 1 223334444444443 468999999986544344443 34444556788999999998532211
Q ss_pred --ccccceeeC----CCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCChhHHHH
Q 001281 336 --MGSVEHYNL----SLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWED 409 (1108)
Q Consensus 336 --~~~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~ 409 (1108)
--....+++ =.++.+|+.++|.....-.-+ +...+.+.+...|-+-|+..++=.++...+.+.-..
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld--------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD--------AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC--------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 101112222 236889999999876532221 156789999999999999999888874333222211
Q ss_pred HHhhccCCCCCCCChhH-HHHHhhhcCChhHHHHHhHhcccCCCceechHHHHHHHHHcCCccCCCCchhHHHHHHHHHH
Q 001281 410 ILNSNIWDLPEQSGVQP-VLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDWGSECFH 488 (1108)
Q Consensus 410 ~l~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~ 488 (1108)
.+.- ..+.+.+ ...=-++.||+++|.-++-+|+++.- . +.|+..- +-++.+...++
T Consensus 249 ~LsG------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L-------------tg~~ng~amLe 305 (894)
T COG2909 249 GLSG------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL-------------TGEENGQAMLE 305 (894)
T ss_pred hccc------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH-------------hcCCcHHHHHH
Confidence 1110 0011111 12224689999999999999999531 1 2233221 11234667899
Q ss_pred HHHhCccc-cccCCCCCeEEEchhHHHHHHHhhc
Q 001281 489 DLVSRSIF-QQSSGDGSKFVMHDLVHDLAQLVSG 521 (1108)
Q Consensus 489 ~L~~~~li-~~~~~~~~~~~~H~lv~~~a~~~~~ 521 (1108)
+|.+++++ ++-++....|+.|.+..+|-+.--.
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 99999976 4555666789999999999875543
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.91 E-value=1.6e-11 Score=128.53 Aligned_cols=277 Identities=16% Similarity=0.231 Sum_probs=140.2
Q ss_pred ceEEEEeCCCCCCCCC---CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccc
Q 001281 804 MEVLELQNCQNCTSLP---SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLA 880 (1108)
Q Consensus 804 L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 880 (1108)
|+.|.+.+|.-...-+ ....+|++++|.+.+|..++... +.. .-..+++|+.|.+..|+.++..... ....
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s--~~s--la~~C~~l~~l~L~~c~~iT~~~Lk--~la~ 213 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS--LLS--LARYCRKLRHLNLHSCSSITDVSLK--YLAE 213 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH--HHH--HHHhcchhhhhhhcccchhHHHHHH--HHHH
Confidence 4555555554332222 13345666666666655333221 100 0123555666666666555443311 1234
Q ss_pred cCCcccEEeecCCCCCCC----CCCCCCCCccEEEEccCCCcccc-----CCCCCcccEEEEeecCCccccC----CCCC
Q 001281 881 GFSSLRELSILKCPKFSG----KLPELLPSLEILVISKCADLVVP-----FSSFPMLCRLEIEECKGITCST----PIDC 947 (1108)
Q Consensus 881 ~~~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l~~~-----~~~l~~L~~L~l~~c~~l~~~~----~~~l 947 (1108)
.+++|++|+++.|+.+++ .+..+...++.+...+|...... -..++.+.++++..|..++... ...+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 567777777777766654 22234444555555566544311 1123445555555665444322 1235
Q ss_pred CCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCccccc----CCCCCccEEEEeccCCccccccccC
Q 001281 948 KLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLK----QGFQQVETLRIGNSEQIKSWLQFDK 1023 (1108)
Q Consensus 948 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~l~~L~~L~l~~~~~l~~~~~~~~ 1023 (1108)
..|+.|+.+ .+....-..+.. -.++..+|+.|-++.|.+++..-+ ...+.|+.+++.+|..+.. ..
T Consensus 294 ~~lq~l~~s--~~t~~~d~~l~a----Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d----~t 363 (483)
T KOG4341|consen 294 HALQVLCYS--SCTDITDEVLWA----LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD----GT 363 (483)
T ss_pred hHhhhhccc--CCCCCchHHHHH----HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh----hh
Confidence 556666655 222221111100 112556777777777766665442 3445677777777664211 01
Q ss_pred CcccCCCCCCCcEeEeeccCcccccc-----ccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCccc
Q 001281 1024 PEQGLHVLSSPEDVSIEENCMSLVSF-----SEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHR 1097 (1108)
Q Consensus 1024 ~p~~l~~l~~L~~L~l~~~c~~l~~l-----p~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~ 1097 (1108)
+-..-.+++.|+.|.++ .|..+++. ...-.....|..|.+++||.++.--.+.+...++||.+++.+|....+
T Consensus 364 L~sls~~C~~lr~lsls-hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLS-HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred HhhhccCCchhccCChh-hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 22223466777777777 77666654 223334666777777777766543333455566777777777655544
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=1.8e-10 Score=128.68 Aligned_cols=87 Identities=23% Similarity=0.252 Sum_probs=47.7
Q ss_pred hccCCCcccEEEecCcccc-----ccCcchhcCCCCcEEEeeCccccc-------cchhhhcCccCcEeeecCCcCCccc
Q 001281 590 MLPKFKKLRVLSLEGYYVT-----QLPNSIKELKLLRYLNVAGTQIRS-------LPESTSSLMHLRVLILRDCSRLTRL 657 (1108)
Q Consensus 590 ~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~Ls~~~i~~-------lp~~i~~L~~L~~L~l~~~~~~~~l 657 (1108)
.+..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|......
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3444555777777776653 344455556666666666665442 2334455666666666665543334
Q ss_pred chhccCCCC---ccEEeecCCC
Q 001281 658 PSKMWNLIN---LRHLDIEGAN 676 (1108)
Q Consensus 658 p~~i~~L~~---L~~L~l~~~~ 676 (1108)
+..+..+.+ |++|++++|.
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc
Confidence 444433333 6666666554
No 34
>PF05729 NACHT: NACHT domain
Probab=98.87 E-value=1.4e-08 Score=101.08 Aligned_cols=144 Identities=25% Similarity=0.304 Sum_probs=88.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccc---ccceeEEEEeCCCCCHH---HHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDI---KFDIKAWVCVSDEFDVL---SISMALLESITCKPCDLKALNEVQVQLQ 284 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 284 (1108)
|++.|+|.+|+||||+++.++.+...... .+...+|++........ .+...+........ ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 58999999999999999999876543320 14566677766544332 33333333332211 11111 122
Q ss_pred HH-hCCceEEEEEeCCCCCChh-------hHHHHHhhhccC--CCCcEEEEecCchhh---hhhccccceeeCCCCChhh
Q 001281 285 KA-LDGKKFLLVLDDVWNENYS-------LWEDLKAPFLAA--APNSKIIVTTRHSHV---ASTMGSVEHYNLSLLSDDD 351 (1108)
Q Consensus 285 ~~-l~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~~--~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~ 351 (1108)
.. ...++++||+|++.+-... .+..+...+... .+++++|||+|.... .........+.+.++++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2578999999998543221 123333333333 578999999998655 3334444689999999999
Q ss_pred HHHHHHhhh
Q 001281 352 CWFVFMNHA 360 (1108)
Q Consensus 352 ~~~lf~~~~ 360 (1108)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999887653
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.79 E-value=1.8e-07 Score=114.92 Aligned_cols=311 Identities=16% Similarity=0.167 Sum_probs=179.0
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC---HHHHHHH
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD---VLSISMA 261 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~---~~~~~~~ 261 (1108)
.++||+.+++.|...+..-. .+...++.+.|..|||||+++++|.....-...+|-...+-....... ....+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~--~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS--KGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh--CCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 37899999999999886433 334569999999999999999999875432211221111111222222 2223333
Q ss_pred HHHHh-------------------cCCCCC-----------------c-----ccHH-----HHHHHHHHHh-CCceEEE
Q 001281 262 LLESI-------------------TCKPCD-----------------L-----KALN-----EVQVQLQKAL-DGKKFLL 294 (1108)
Q Consensus 262 i~~~l-------------------~~~~~~-----------------~-----~~~~-----~~~~~l~~~l-~~kr~Ll 294 (1108)
++.++ +..... . .... .....+.... +.|+.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33333 111000 0 0000 0112233333 4569999
Q ss_pred EEeCCCCCChhhHHHHHhhhccCC----CCcEEEE--ecCch--hhhhhccccceeeCCCCChhhHHHHHHhhhcCCCCc
Q 001281 295 VLDDVWNENYSLWEDLKAPFLAAA----PNSKIIV--TTRHS--HVASTMGSVEHYNLSLLSDDDCWFVFMNHAFYTRDH 366 (1108)
Q Consensus 295 VlDdv~~~~~~~~~~l~~~l~~~~----~gs~iiv--TtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 366 (1108)
|+||+.+.+....+-+........ ....|.. |.+.. .+.........+.|.||+..+...+...........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 999997766555544443333221 0112333 33322 122222344789999999999999998877553321
Q ss_pred cchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCC------CChhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHH
Q 001281 367 IHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTK------HGDNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLK 440 (1108)
Q Consensus 367 ~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 440 (1108)
+ . +....|.++.+|+|+.+..+-..+... .+...|..-..+ ....+.-+.+.+.+..-.+.||...|
T Consensus 239 ~--~----p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 239 P--A----PLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred c--c----hHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHHHHHHHHHHHhcCCHHHH
Confidence 1 1 677899999999999999998888664 223344432221 11111112255568889999999999
Q ss_pred HHHhHhcccCCCceechHHHHHHHHHcCCccCCCCchhHHHHHHHHHHHHHhCcccccc-----CCCCCe--E-EEchhH
Q 001281 441 RCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDWGSECFHDLVSRSIFQQS-----SGDGSK--F-VMHDLV 512 (1108)
Q Consensus 441 ~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~-----~~~~~~--~-~~H~lv 512 (1108)
..+...|++-. .|+.+.|...|- +.....+....+.|....++-.. ...... | ..||.|
T Consensus 312 ~Vl~~AA~iG~--~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIGN--RFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhCc--cCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 99999999954 455666655541 12345555656666555554321 111111 2 468888
Q ss_pred HHHHH
Q 001281 513 HDLAQ 517 (1108)
Q Consensus 513 ~~~a~ 517 (1108)
++.|-
T Consensus 379 qqaaY 383 (849)
T COG3899 379 QQAAY 383 (849)
T ss_pred HHHHh
Confidence 88764
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.76 E-value=7.9e-07 Score=103.47 Aligned_cols=301 Identities=15% Similarity=0.094 Sum_probs=157.7
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccc--cccc--ceeEEEEeCCCCCHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVS--DIKF--DIKAWVCVSDEFDVLSI 258 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f--~~~~wv~~~~~~~~~~~ 258 (1108)
+..+.||++|+++|...|...-.+.....++.|+|++|.|||++++.|.+..... .... -.+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4678999999999998886432222234678899999999999999998764211 0011 13567777776778888
Q ss_pred HHHHHHHhcCCCC-CcccHHHHHHHHHHHh-C--CceEEEEEeCCCCCChhhHHHHHhhhcc-CCCCcEEEE--ecCchh
Q 001281 259 SMALLESITCKPC-DLKALNEVQVQLQKAL-D--GKKFLLVLDDVWNENYSLWEDLKAPFLA-AAPNSKIIV--TTRHSH 331 (1108)
Q Consensus 259 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--TtR~~~ 331 (1108)
+..|..++....+ ......+....+...+ . ....+||||++..-....-+.+...+.+ ...+++|+| ++.+..
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 8889888854332 2222333444444444 2 2346899999943221111223222222 234556554 333211
Q ss_pred --------hhhhccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCC
Q 001281 332 --------VASTMGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHG 403 (1108)
Q Consensus 332 --------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~ 403 (1108)
+...++ ...+...+++.++-.+++..++....... .++...-+|+.+++..|-.-.||.++-.+...+..
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVL-dDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEII-DHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 222222 23477799999999999998886422100 01111133343444444456666655544432111
Q ss_pred ----hhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHHHHhHhcccCC---CceechHHHHHHH--HHc--C-Ccc
Q 001281 404 ----DNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKRCFAYCAIFPK---DYELKEKELVFLW--MAE--G-IIQ 471 (1108)
Q Consensus 404 ----~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~---~~~i~~~~li~~w--~a~--g-~i~ 471 (1108)
.++-..+.... ....+.-....||.+.|..+..+...-+ ...++...+.... +++ | .+.
T Consensus 992 skVT~eHVrkAleei---------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iG 1062 (1164)
T PTZ00112 992 QKIVPRDITEATNQL---------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIG 1062 (1164)
T ss_pred CccCHHHHHHHHHHH---------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcC
Confidence 12222222111 0112333456789888865554432211 1134444443322 222 1 111
Q ss_pred CCCCchhHHHHHHHHHHHHHhCccccc
Q 001281 472 QPRNNKQLEDWGSECFHDLVSRSIFQQ 498 (1108)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~L~~~~li~~ 498 (1108)
.....+....++.+|...|+|-.
T Consensus 1063 ----v~plTqRV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1063 ----MCSNNELFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred ----CCCcHHHHHHHHHHHHhcCeEEe
Confidence 11111256667777777777643
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=1.3e-09 Score=121.68 Aligned_cols=114 Identities=18% Similarity=0.063 Sum_probs=78.0
Q ss_pred ccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccc-------cCcchhcCCCCcEEEeeCcccc
Q 001281 559 LYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQ-------LPNSIKELKLLRYLNVAGTQIR 631 (1108)
Q Consensus 559 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~l~~L~~L~Ls~~~i~ 631 (1108)
+..+.+++.+.+..+... ......+...+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+.
T Consensus 19 ~~~l~~L~~l~l~~~~l~----~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLG----EEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHhhccEEeecCCCCc----HHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 344556777776654321 01122345567778889999999887653 3456777889999999999887
Q ss_pred -ccchhhhcCcc---CcEeeecCCcCCc----ccchhccCC-CCccEEeecCCC
Q 001281 632 -SLPESTSSLMH---LRVLILRDCSRLT----RLPSKMWNL-INLRHLDIEGAN 676 (1108)
Q Consensus 632 -~lp~~i~~L~~---L~~L~l~~~~~~~----~lp~~i~~L-~~L~~L~l~~~~ 676 (1108)
..+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 34555655555 9999999986431 233455667 899999999987
No 38
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.63 E-value=6.1e-08 Score=103.32 Aligned_cols=292 Identities=19% Similarity=0.199 Sum_probs=185.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
.+.+.++|.|||||||++-.+.. .+. . +-+.+.++....-.+...+.-.+...++....+.. .....+.....+
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~-~-~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~---~~~~~~~~~~~~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AAS-E-YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD---SAVDTLVRRIGD 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hhh-h-cccceeeeeccccCchhHhHHHHHhhcccccccch---HHHHHHHHHHhh
Confidence 58999999999999999998887 222 1 44567777777666766666666666665543311 122345566778
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhhhccccceeeCCCCChh-hHHHHHHhhhcCCCCccc
Q 001281 290 KKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVASTMGSVEHYNLSLLSDD-DCWFVFMNHAFYTRDHIH 368 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~~~ 368 (1108)
+|.++|+||...- ...-..+...+....+.-.|+.|+|..... .+...+.++.|+.. ++.++|...+........
T Consensus 88 rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 RRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 8999999998211 122233444455566677889999974332 34466788888775 799999888754443222
Q ss_pred hhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCCh-------hHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHH
Q 001281 369 VQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGD-------NAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKR 441 (1108)
Q Consensus 369 ~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~-------~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~ 441 (1108)
+.........+|.++.+|.|++|...++..+.-... +.|...-.-...-...+......+.+||.-|....+-
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 222222678899999999999999999988765321 2222221110001113456778899999999999999
Q ss_pred HHhHhcccCCCceechHHHHHHHHHcCCccCCCCchhHHHHHHHHHHHHHhCccccccC-CCCCeEEEchhHHHHHHHhh
Q 001281 442 CFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDWGSECFHDLVSRSIFQQSS-GDGSKFVMHDLVHDLAQLVS 520 (1108)
Q Consensus 442 cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~~-~~~~~~~~H~lv~~~a~~~~ 520 (1108)
.|..++.|...|... -..|.+-|-.. ..........+..+++.+++.... .+...|+.-+-++.|+..+.
T Consensus 244 ~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 244 LFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred Hhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999998877654 23444443221 011233444567788888875433 12234666666666665443
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=3.1e-08 Score=113.89 Aligned_cols=103 Identities=33% Similarity=0.483 Sum_probs=87.1
Q ss_pred ccCCCcccEEEecCccccccCcchhcCC-CCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELK-LLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRH 669 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 669 (1108)
+..+..+..|++.++.++.+|.....+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 3455789999999999999998888885 999999999999999988999999999999996 47888887778999999
Q ss_pred EeecCCCCCCcCCccCCCCCCCCccC
Q 001281 670 LDIEGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 670 L~l~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
|++++|. +..+|..++.+..|++|.
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELD 215 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhh
Confidence 9999998 788887665555566553
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.58 E-value=1.2e-06 Score=86.81 Aligned_cols=182 Identities=20% Similarity=0.242 Sum_probs=98.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+|||.++-++.+.-++......+..+.-+.+||++|+||||||+-+.+.... .|. +.+.+ ..+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~---~~~---~~sg~-~i~-------- 87 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV---NFK---ITSGP-AIE-------- 87 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-----EE---EEECC-C----------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC---CeE---eccch-hhh--------
Confidence 458999999888875554322222234778899999999999999999997544 332 22211 100
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccC--------CCC-----------cEE
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAA--------APN-----------SKI 323 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~i 323 (1108)
...++...+.. + +++-+|.+|+++.-+..+-+.+..++.++ +++ +-|
T Consensus 88 ------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 88 ------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 01111111211 2 23557888999876665555555544321 111 122
Q ss_pred EEecCchhhhhhcccc-c-eeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhh
Q 001281 324 IVTTRHSHVASTMGSV-E-HYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLL 398 (1108)
Q Consensus 324 ivTtR~~~v~~~~~~~-~-~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 398 (1108)
=.|||...+...+..- . ..+++..+.+|-.++..+.+..-.- ++.++.+.+|++++.|-|--..-+-...
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT------EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3477765554444332 2 3479999999999999877643322 1223788999999999996555444443
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=7.2e-07 Score=101.94 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=105.2
Q ss_pred CceeccchhHHH---HHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHH
Q 001281 184 RAVYGRDDDKAK---ILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 184 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
.++||++..+.. +..++.... ...+.++|++|+||||+|+.+++.... .| +.++.........+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~-----~~~ilL~GppGtGKTtLA~~ia~~~~~---~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR-----LSSMILWGPPGTGKTTLARIIAGATDA---PF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC-----CceEEEECCCCCCHHHHHHHHHHHhCC---CE-----EEEecccccHHHHH
Confidence 468888877655 666664432 457888999999999999999886432 22 22222111111111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEE--ecCchh--hhhh
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIV--TTRHSH--VAST 335 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~--v~~~ 335 (1108)
.++ ...... ..+++.+|++|+++.-...+.+.+...+. .|..++| ||.+.. +...
T Consensus 79 ~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 222 111111 24578899999998766556666655543 3455555 334322 1111
Q ss_pred -ccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 336 -MGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 336 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
..-...+.+.++++++.+.++.+.+....... ..+.++....|++.|+|.+..+..+.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~--i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL--VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11226789999999999999987653211111 01223677889999999987665443
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=7.1e-08 Score=93.77 Aligned_cols=128 Identities=24% Similarity=0.272 Sum_probs=50.2
Q ss_pred cCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhh-h
Q 001281 560 YEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPEST-S 638 (1108)
Q Consensus 560 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i-~ 638 (1108)
.+..++|.|.+.++.. ..+...-..+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.+++.+ .
T Consensus 16 ~n~~~~~~L~L~~n~I---------~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQI---------STIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccc---------ccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 3444566666655543 111111125678899999999998885 5778899999999999999887666 4
Q ss_pred cCccCcEeeecCCcCCcccc--hhccCCCCccEEeecCCCCCCcCCc----cCCCCCCCCccCceee
Q 001281 639 SLMHLRVLILRDCSRLTRLP--SKMWNLINLRHLDIEGANSLEGMPY----GMEKLKHLQTLSNFIV 699 (1108)
Q Consensus 639 ~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~~~~ 699 (1108)
.+++|+.|++++|. +..+- ..+..+++|++|++.+|+ +...+. -+..+++|+.|+...+
T Consensus 86 ~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 NLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 68999999999864 43332 346788999999999987 444332 1566777777765444
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.54 E-value=4.1e-09 Score=114.84 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=42.6
Q ss_pred CCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC----CCCCCCCccEEEecCCC
Q 001281 778 NLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP----SLSMLGSLKQLTIKGMT 836 (1108)
Q Consensus 778 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~~~ 836 (1108)
.|.+|+++.|++..+|..+. .+..|++|.|.+|.+.. .| .-|...-.++|+..-|.
T Consensus 212 pLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ceeeeecccCceeecchhhh--hhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 57788888999999998887 46899999999998743 44 23455566788887773
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.54 E-value=6.6e-07 Score=94.74 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=96.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
++.-..+||++|+||||||+.+...... .| ..++...+-.+-++.+++.- -.....
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~---~f-----~~~sAv~~gvkdlr~i~e~a----------------~~~~~~ 102 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNA---AF-----EALSAVTSGVKDLREIIEEA----------------RKNRLL 102 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCC---ce-----EEeccccccHHHHHHHHHHH----------------HHHHhc
Confidence 3677889999999999999999885332 33 33443333333333333221 122335
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEE--ecCchhhhh---hccccceeeCCCCChhhHHHHHHhhhcCC
Q 001281 289 GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIV--TTRHSHVAS---TMGSVEHYNLSLLSDDDCWFVFMNHAFYT 363 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~~---~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 363 (1108)
+++.+|++|.|+.-+..+.+.+ ++.-..|.-|+| ||.++...- ...-..++.+++|+.+|-.+++.+.+...
T Consensus 103 gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 8999999999977665555554 444567777777 566543221 12233789999999999999998844322
Q ss_pred CC--ccchhhhhhHHHHHHHHhcCCchHH
Q 001281 364 RD--HIHVQRISGLFHKKVVQKCRGLPLA 390 (1108)
Q Consensus 364 ~~--~~~~~~~~~~~~~~i~~~c~glPLa 390 (1108)
.. ......+.++....+++.++|---+
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 22 1111123336778889999886533
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.54 E-value=1.3e-06 Score=90.97 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=95.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
.+.+.++|++|+|||+||+++++....+ ...+.|+++.... ... ..+.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~~---~~~---------------------~~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKSQ---YFS---------------------PAVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHhh---hhh---------------------HHHHhhcc-
Confidence 3578999999999999999999864321 2234566653110 000 01111222
Q ss_pred ceEEEEEeCCCCCC-hhhHHH-HHhhhccC-CCCcEEE-EecCc---------hhhhhhccccceeeCCCCChhhHHHHH
Q 001281 290 KKFLLVLDDVWNEN-YSLWED-LKAPFLAA-APNSKII-VTTRH---------SHVASTMGSVEHYNLSLLSDDDCWFVF 356 (1108)
Q Consensus 290 kr~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 356 (1108)
+.-+||+||+|... ...|+. +...+... ..|..+| +|++. +.+...+.....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23489999998642 245653 33333322 3455555 45543 345555555568999999999999999
Q ss_pred HhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHh
Q 001281 357 MNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGG 396 (1108)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 396 (1108)
.+.+....- .+.+++..-|++++.|..-++..+-.
T Consensus 171 ~~~a~~~~l-----~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 171 QRNAYQRGI-----ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHcCC-----CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 988864321 12237788999999887666554433
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=2.3e-07 Score=87.99 Aligned_cols=118 Identities=21% Similarity=0.241 Sum_probs=80.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccc--cccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSD--IKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
.+++.|+|.+|+|||++++.+.++..... ..-..++|+.+....+...+...++.+++.......+..++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 47899999999999999999998653100 0034577999998889999999999999987666456666777777777
Q ss_pred CCc-eEEEEEeCCCCC-ChhhHHHHHhhhccCCCCcEEEEecCc
Q 001281 288 DGK-KFLLVLDDVWNE-NYSLWEDLKAPFLAAAPNSKIIVTTRH 329 (1108)
Q Consensus 288 ~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 329 (1108)
... ..+||+|++..- +.+.++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 654 459999999443 3333444433322 667778877664
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=9.2e-09 Score=112.16 Aligned_cols=177 Identities=25% Similarity=0.344 Sum_probs=129.0
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+..|-.|..|.|..|.+..+|..++++..|.||+|+.|++..+|..++.|+ |++|.+++| +++.+|..++.+..|.+|
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHh
Confidence 445567788888888888899999999999999999999999999888875 888888874 588899989988889999
Q ss_pred eecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEE
Q 001281 671 DIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSL 750 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 750 (1108)
|.+.|. +..+|..++.|.+|+.|..... .+ ...+..+. .-.|..|++
T Consensus 172 d~s~ne-i~slpsql~~l~slr~l~vrRn------------------------------~l-~~lp~El~-~LpLi~lDf 218 (722)
T KOG0532|consen 172 DVSKNE-IQSLPSQLGYLTSLRDLNVRRN------------------------------HL-EDLPEELC-SLPLIRLDF 218 (722)
T ss_pred hhhhhh-hhhchHHhhhHHHHHHHHHhhh------------------------------hh-hhCCHHHh-CCceeeeec
Confidence 998887 7788888888888887752111 00 11122233 235778888
Q ss_pred EecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccC-CcCcceEEEEeCCC
Q 001281 751 QWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDL-SFSKMEVLELQNCQ 813 (1108)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~-~l~~L~~L~L~~~~ 813 (1108)
++|.....+ -.+..+..|+.|.|.+|....-|..+... ...=-++|+..-|+
T Consensus 219 ScNkis~iP-----------v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 219 SCNKISYLP-----------VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCceeecc-----------hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 877653222 22566789999999999888777655321 12235678888884
No 48
>PTZ00202 tuzin; Provisional
Probab=98.46 E-value=6.5e-06 Score=88.98 Aligned_cols=171 Identities=12% Similarity=0.172 Sum_probs=103.5
Q ss_pred CCccccCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHH
Q 001281 177 SSSVRTERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVL 256 (1108)
Q Consensus 177 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 256 (1108)
...+.+...|+||+++.+++...|...+. ...+++.|+|++|+|||||++.+..... ..+++.-.. +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~--~~privvLtG~~G~GKTTLlR~~~~~l~-------~~qL~vNpr--g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT--AHPRIVVFTGFRGCGKSSLCRSAVRKEG-------MPAVFVDVR--GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC--CCceEEEEECCCCCCHHHHHHHHHhcCC-------ceEEEECCC--CHH
Confidence 34455678999999999999999864332 2356999999999999999999986532 112222222 679
Q ss_pred HHHHHHHHHhcCCCCCcc-c-HHHHHHHHHHHh-C-CceEEEEEeCCCCCC-hhhHHHHHhhhccCCCCcEEEEecCchh
Q 001281 257 SISMALLESITCKPCDLK-A-LNEVQVQLQKAL-D-GKKFLLVLDDVWNEN-YSLWEDLKAPFLAAAPNSKIIVTTRHSH 331 (1108)
Q Consensus 257 ~~~~~i~~~l~~~~~~~~-~-~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~ 331 (1108)
++++.++.+++.++.... + ...+.+.+.+.- . +++.+||+-=-.-.+ ...+.+ ...+.....-|+|++---.+.
T Consensus 324 ElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne-~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 324 DTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNE-VVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHH-HHHHHccchhheeeeeehHhh
Confidence 999999999997433221 1 233333333322 2 666666663221011 011222 122334445678887554433
Q ss_pred hhhhc---cccceeeCCCCChhhHHHHHHhh
Q 001281 332 VASTM---GSVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 332 v~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
..-.. .-..-|.++.++.++|.++-.+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 22111 11246889999999988776554
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=5.5e-06 Score=91.20 Aligned_cols=179 Identities=17% Similarity=0.194 Sum_probs=116.5
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc----cccccccceeEEEEe-CCCCCHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK----AVSDIKFDIKAWVCV-SDEFDVLSI 258 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~~f~~~~wv~~-~~~~~~~~~ 258 (1108)
.+++|.+..++.+...+..+.- .+...++|+.|+||||+|+.++... .... ++|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~----~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~-h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF----SHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE-YVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC----CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCeEEeccccCCCCCHHH-
Confidence 4678999999999998865432 4678899999999999999888743 1222 6666555442 22222222
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhh-hhc-
Q 001281 259 SMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVA-STM- 336 (1108)
Q Consensus 259 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~~- 336 (1108)
.+++.+.+... -..+++-++|+|++..-+...+..+...+.....++.+|++|.+.+.. ...
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22233322211 112456677777775556678889999988877889999888764322 111
Q ss_pred cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 337 GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 337 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
.-...+.+.++++++....+.+.... . ..+.+..++..++|.|..+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-~--------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-I--------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-C--------CHHHHHHHHHHcCCCHHHHHH
Confidence 12257899999999988777654321 1 114567889999998876543
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3e-08 Score=104.97 Aligned_cols=85 Identities=24% Similarity=0.260 Sum_probs=52.9
Q ss_pred cCCCcccEEEecCccccccC--cchhcCCCCcEEEeeCccccc---cchhhhcCccCcEeeecCCcCCcccch-hccCCC
Q 001281 592 PKFKKLRVLSLEGYYVTQLP--NSIKELKLLRYLNVAGTQIRS---LPESTSSLMHLRVLILRDCSRLTRLPS-KMWNLI 665 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~lp--~~i~~l~~L~~L~Ls~~~i~~---lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~ 665 (1108)
+++++||...|.++.+...+ .....|++++.||||+|-+.. +-+-...|++|+.|+|+.|........ .-..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35677777778777776555 356677788888888775552 334456777777777777643211111 112456
Q ss_pred CccEEeecCCC
Q 001281 666 NLRHLDIEGAN 676 (1108)
Q Consensus 666 ~L~~L~l~~~~ 676 (1108)
+|+.|.|++|.
T Consensus 198 ~lK~L~l~~CG 208 (505)
T KOG3207|consen 198 HLKQLVLNSCG 208 (505)
T ss_pred hhheEEeccCC
Confidence 66777777665
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=4.3e-09 Score=110.63 Aligned_cols=255 Identities=15% Similarity=0.143 Sum_probs=171.1
Q ss_pred CCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCC----C
Q 001281 825 GSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGK----L 900 (1108)
Q Consensus 825 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~ 900 (1108)
..|+.|.+.||..+..-+.. .....+|+++.|.+.+|..++.-. .......++.|+.|++..|..++.. +
T Consensus 138 g~lk~LSlrG~r~v~~sslr----t~~~~CpnIehL~l~gc~~iTd~s--~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLR----TFASNCPNIEHLALYGCKKITDSS--LLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccCCcchhh----HHhhhCCchhhhhhhcceeccHHH--HHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 56899999999866554322 122568999999999887665443 2223457899999999999887742 3
Q ss_pred CCCCCCccEEEEccCCCccc-----cCCCCCcccEEEEeecCCccccCC----CCCCCccEEEEecCCcccccccCcccC
Q 001281 901 PELLPSLEILVISKCADLVV-----PFSSFPMLCRLEIEECKGITCSTP----IDCKLIESMTISNSSLQIYGCEGMIFN 971 (1108)
Q Consensus 901 p~~l~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~c~~l~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~ 971 (1108)
.++.++|++|+++.|+.+.. ....+..++.+...+|.......+ .+++-+.++++. .|..+.-..+.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~--~c~~lTD~~~~-- 287 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ--HCNQLTDEDLW-- 287 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchh--hhccccchHHH--
Confidence 45789999999999997753 122455677777778876553221 234445555544 22222111100
Q ss_pred CCCCCCCCCCCcEEEEcccCCCccccc----CCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCcccc
Q 001281 972 DPPAMDSKSLPTSVTISNVLEFGKFLK----QGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLV 1047 (1108)
Q Consensus 972 ~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~ 1047 (1108)
..-..+..|+.|+.++|..+++.++ +..++|+.|.+..|..+.+. .+...-.+.+.|+.|++. +|..++
T Consensus 288 --~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~----~ft~l~rn~~~Le~l~~e-~~~~~~ 360 (483)
T KOG4341|consen 288 --LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR----GFTMLGRNCPHLERLDLE-ECGLIT 360 (483)
T ss_pred --HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh----hhhhhhcCChhhhhhccc-ccceeh
Confidence 0011578899999999999988763 67799999999999973321 111223578899999998 887766
Q ss_pred cc--ccccccCCCcceEecccccCCCCCccc----CCCCCCCccEEeeecCcCcc
Q 001281 1048 SF--SEVIFLMNNLRYLKIENSRALKSLPQE----VMGNNAQLEKLFIKYCDNIH 1096 (1108)
Q Consensus 1048 ~l--p~~~~~l~~L~~L~l~~c~~l~~lp~~----~l~~l~~L~~L~l~~c~~L~ 1096 (1108)
+- -....+++.|+.|.++.|..++.-... .-..+..|+.+.+++||.+.
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 54 223347999999999999877654111 22345688999999988654
No 52
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=2.7e-06 Score=89.34 Aligned_cols=171 Identities=13% Similarity=0.112 Sum_probs=99.8
Q ss_pred cchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 189 RDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
.+..++++.+++... ....|.|+|+.|+|||++|+.+++.... .....++++++.-.+. .
T Consensus 22 ~~~~~~~l~~~~~~~-----~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~~------~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK-----GDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQA------D------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC-----CCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHHh------H------
Confidence 344566666665322 2468899999999999999999876422 1223455554322110 0
Q ss_pred CCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh-hH-HHHHhhhcc-CCCCcEEEEecCchh---------hhhhc
Q 001281 269 KPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYS-LW-EDLKAPFLA-AAPNSKIIVTTRHSH---------VASTM 336 (1108)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~ 336 (1108)
..+...+.+ .-+||+||+..-... .| +.+...+.. ...+..+|+|++... +...+
T Consensus 82 ------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 ------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 011112222 238999999654322 23 334443332 233458889887532 11222
Q ss_pred cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhh
Q 001281 337 GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGL 397 (1108)
Q Consensus 337 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 397 (1108)
.....+.+.++++++...++...+....- .+.++....+++.+.|.|..+..+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-----~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-----QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 22357899999999988888765432111 122266788888999999887766433
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.8e-05 Score=92.28 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=115.8
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.++||.+..++.|..++....- .+.+.++|..|+||||+|+.+.+...... .++. ..+... ...+.|
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL----~HAyLFtGPpGvGKTTlAriLAKaLnCe~-~~~~---~PCG~C----~sCr~I 82 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRL----HHAYLFTGTRGVGKTTLSRIFAKALNCET-GVTS---QPCGVC----RACREI 82 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCC----CeEEEEECCCCCCHHHHHHHHHHHhcCcc-CCCC---CCCccc----HHHHHH
Confidence 35789999999999998865432 45677999999999999998877542111 1000 000000 000111
Q ss_pred HHH-----hcCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-h
Q 001281 263 LES-----ITCKPCDLKALNEVQVQLQKA----LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-V 332 (1108)
Q Consensus 263 ~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v 332 (1108)
... +.....+...+++....+... ..++.-++|||++..-+...|..+...+.......++|+||++.. +
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 000 000000011122222222211 134556889999977776778888887776667788888887643 3
Q ss_pred hhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch-HHHHHHHh
Q 001281 333 ASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP-LAAKTLGG 396 (1108)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 396 (1108)
...+ .-...+.+..++.++..+.+.+.+....-. +.++....|++.++|.. -|+..+-.
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-----id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-----FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2221 122679999999999998888766432211 12266789999998854 46555433
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.39 E-value=3.5e-05 Score=90.09 Aligned_cols=248 Identities=13% Similarity=0.079 Sum_probs=137.4
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|.++.++++.+++..-.. +...+.+.|+|++|+||||+|+.++++.. ++ .+-++.+...+.. ....+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~-g~~~~~lLL~GppG~GKTtla~ala~el~-----~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK-GKPKKALLLYGPPGVGKTSLAHALANDYG-----WE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CC-EEEEcccccccHH-HHHHH
Confidence 45699999999999998864321 12257899999999999999999998742 22 2233444322222 22222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh----hhHHHHHhhhccCCCCcEEEEecCchh-hhh-hc
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENY----SLWEDLKAPFLAAAPNSKIIVTTRHSH-VAS-TM 336 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~ 336 (1108)
+....... .....++-+||+|+++.-.. ..+..+...+. ..+..||+|+.+.. ... .+
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 22211100 01113678999999955322 23555555554 23445666664421 111 11
Q ss_pred -cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCC-C--ChhHHHHHHh
Q 001281 337 -GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTK-H--GDNAWEDILN 412 (1108)
Q Consensus 337 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~--~~~~w~~~l~ 412 (1108)
.....+.+.+++.++....+...+....-. +..+....|++.++|-.-.+......+... . +.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-----i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~ 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIE-----CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc
Confidence 123568899999999888887766432221 122678899999999665554333333322 1 1222222221
Q ss_pred hccCCCCCCCChhHHHHHhhh-cCChhHHHHHhHhcccCCCceechHHHHHHHHHcCCccC
Q 001281 413 SNIWDLPEQSGVQPVLKLSYH-YLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQ 472 (1108)
Q Consensus 413 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~ 472 (1108)
......++.++..-+. .-...+...+.. ..++. ..+-.|+.+.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1123567777776654 223333332222 12233 35678999999764
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.39 E-value=7.9e-08 Score=96.32 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=49.2
Q ss_pred CCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceEecccccCCCCCcc-cC
Q 001281 999 QGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQ-EV 1077 (1108)
Q Consensus 999 ~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~-~~ 1077 (1108)
+.+++|+.|++++|. +.++..+-..|.+.++|.++ .|.+++++. +..+-+|..||+++ |+|+.+.. .+
T Consensus 326 a~L~~L~~LDLS~N~-------Ls~~~Gwh~KLGNIKtL~La--~N~iE~LSG-L~KLYSLvnLDl~~-N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNL-------LAECVGWHLKLGNIKTLKLA--QNKIETLSG-LRKLYSLVNLDLSS-NQIEELDEVNH 394 (490)
T ss_pred hhcccceEeecccch-------hHhhhhhHhhhcCEeeeehh--hhhHhhhhh-hHhhhhheeccccc-cchhhHHHhcc
Confidence 445556666666665 44444444456666667776 566666653 23366667777766 45555533 34
Q ss_pred CCCCCCccEEeeecCc
Q 001281 1078 MGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1078 l~~l~~L~~L~l~~c~ 1093 (1108)
+++||.|+.+.+.++|
T Consensus 395 IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccHHHHHhhcCCC
Confidence 5666777777777666
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.4e-05 Score=89.56 Aligned_cols=195 Identities=13% Similarity=0.152 Sum_probs=110.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|.+..++.+...+..... .+.+.++|+.|+||||+|+.+.+...... ..... .+....+-.++....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~----~h~~L~~Gp~G~GKTtla~~la~~l~c~~-~~~~~---pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRI----HHAWLLSGTRGVGKTTIARLLAKSLNCQN-GITSN---PCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCC----CeEEEEecCCCCCHHHHHHHHHHHhcCCC-CCCCC---CCCCCHHHHHHhcCC
Confidence 34789999999999988865432 46788999999999999999987542110 00000 000000000000000
Q ss_pred HHHhc-CCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhh
Q 001281 263 LESIT-CKPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVAST 335 (1108)
Q Consensus 263 ~~~l~-~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~ 335 (1108)
.-.+. .........++. +.+.+.+ .+++-++|+|++..-+...++.+...+.......++|++|.+. .+...
T Consensus 87 ~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00000 000000112221 1122221 2456699999997666566777777777666677777777543 33222
Q ss_pred c-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 336 M-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 336 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
+ +-...+++.+++.++..+.+...+...+.. +.++.+..|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-----i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESID-----TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 2 122578999999999988887765432211 12256788999999987543
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.3e-07 Score=100.41 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=81.5
Q ss_pred ccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcc--hhcCCCCcEEEeeCcccc--ccc
Q 001281 559 LYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNS--IKELKLLRYLNVAGTQIR--SLP 634 (1108)
Q Consensus 559 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~l~~L~~L~Ls~~~i~--~lp 634 (1108)
...++++|.|.+..+-.. .-...-.....+++|+.|+|+.|.+....++ -..+.+|+.|.|+.|+++ .+-
T Consensus 142 ~k~~~~v~~LdLS~NL~~------nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFH------NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred hhhCCcceeecchhhhHH------hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH
Confidence 456778888877655431 1122344567788888888888886543222 245678888888888877 333
Q ss_pred hhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCC--ccCCCCCCCCccC
Q 001281 635 ESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMP--YGMEKLKHLQTLS 695 (1108)
Q Consensus 635 ~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~ 695 (1108)
.-+..+++|+.|+|..|..+..-......+..|+.|||++|+ +...+ .-++.++.|..|.
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh
Confidence 344667888888888875333333334456778888888887 44444 2355555555554
No 58
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.35 E-value=1.6e-07 Score=91.40 Aligned_cols=85 Identities=25% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCCcccEEEecCccccccCcchh-cCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhc-cCCCCccEE
Q 001281 593 KFKKLRVLSLEGYYVTQLPNSIK-ELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKM-WNLINLRHL 670 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~~lp~~i~-~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i-~~L~~L~~L 670 (1108)
+...++.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|. ++.++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence 4457899999999999874 465 6889999999999999985 58889999999999964 67776555 469999999
Q ss_pred eecCCCCCCcC
Q 001281 671 DIEGANSLEGM 681 (1108)
Q Consensus 671 ~l~~~~~~~~l 681 (1108)
++++|. +..+
T Consensus 94 ~L~~N~-I~~l 103 (175)
T PF14580_consen 94 YLSNNK-ISDL 103 (175)
T ss_dssp E-TTS----SC
T ss_pred ECcCCc-CCCh
Confidence 999997 5544
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.35 E-value=3.7e-06 Score=81.78 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=73.8
Q ss_pred eccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 001281 187 YGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESI 266 (1108)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 266 (1108)
+|++..+..+...+.... .+.+.|+|++|+|||++|+.+++.... .-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~-----~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP-----PKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC-----CCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 478888999988875532 368889999999999999999987532 12345666655433322211111000
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccC------CCCcEEEEecCchh
Q 001281 267 TCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAA------APNSKIIVTTRHSH 331 (1108)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtR~~~ 331 (1108)
............++.+||+||++.-.......+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456889999999753222333333333322 36788888888643
No 60
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=5.8e-07 Score=71.48 Aligned_cols=57 Identities=30% Similarity=0.461 Sum_probs=40.0
Q ss_pred cccEEEecCccccccC-cchhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCc
Q 001281 596 KLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCS 652 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~ 652 (1108)
+|++|++++|.++.+| ..|.++++|++|++++|.++.+|+ .|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5677777777777775 456777777777777777776643 56777777777777653
No 61
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=7.9e-08 Score=96.32 Aligned_cols=84 Identities=25% Similarity=0.323 Sum_probs=68.6
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
...++.|..|||++|.|+.+.+++.-++.++.|++|.|+|..+-. +..|++|+.|||++|. +..+-..-.+|-|.+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 445678899999999999998888888999999999999887744 8888999999999864 66666656677788888
Q ss_pred eecCCC
Q 001281 671 DIEGAN 676 (1108)
Q Consensus 671 ~l~~~~ 676 (1108)
.|++|.
T Consensus 358 ~La~N~ 363 (490)
T KOG1259|consen 358 KLAQNK 363 (490)
T ss_pred ehhhhh
Confidence 888876
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.34 E-value=5.1e-07 Score=91.59 Aligned_cols=50 Identities=24% Similarity=0.403 Sum_probs=34.0
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
.||||+++++++.+.+. .......+.+.|+|.+|+|||+|.++++.....
T Consensus 1 ~fvgR~~e~~~l~~~l~--~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD--AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTG--GTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999995 222344689999999999999999999887654
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.34 E-value=1.1e-05 Score=90.73 Aligned_cols=199 Identities=14% Similarity=0.073 Sum_probs=109.8
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccc-eeEEEEeCCCCCHH-HHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFD-IKAWVCVSDEFDVL-SISM 260 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~-~~~~ 260 (1108)
-..++|++..++.+..++..+. .+.+.++|+.|+||||+|+.+.+..... .+. ..+.++++...+.. ....
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~-----~~~lll~Gp~GtGKT~la~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN-----LPHLLVQGPPGSGKTAAVRALARELYGD--PWENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHHhcCc--ccccceEEechhhhhhcchhhhh
Confidence 3568999999999988885432 3457899999999999999988764321 111 22344433211000 0000
Q ss_pred ---HHHHHhcCC-CCCcccHHHHHHHHH---HHh--CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-
Q 001281 261 ---ALLESITCK-PCDLKALNEVQVQLQ---KAL--DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS- 330 (1108)
Q Consensus 261 ---~i~~~l~~~-~~~~~~~~~~~~~l~---~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~- 330 (1108)
.....++.. .......+.....+. ... .+.+-+||+||+..-.......+...+......+++|+|+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 000000000 000001111111111 111 2345589999996554444555665555555567788877542
Q ss_pred hhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 331 HVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 331 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
.+...+ .....+.+.+++.++....+...+...... +..+....+++.++|.+-.+..
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 222222 122468889999999888888765432211 2236788999999987655543
No 64
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=2.4e-06 Score=98.66 Aligned_cols=202 Identities=16% Similarity=0.118 Sum_probs=117.0
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
.+++|.+.-++.|..++..... .+.+.++|++|+||||+|+.+++.....+ .+...+|.|.+... +.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l----~ha~Lf~GppGtGKTTlA~~lA~~l~c~~-~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL----GHAYLFSGPRGVGKTTTARLIAMAVNCSG-EDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHHHhccC-CCCCCCCcChhhHH-HhcCCCCce
Confidence 4689999999998888865432 46779999999999999999987653222 12222333321100 000000000
Q ss_pred HHhcCC-CCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhhhhhcc-cc
Q 001281 264 ESITCK-PCDLKALNEVQVQLQK-ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHVASTMG-SV 339 (1108)
Q Consensus 264 ~~l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~-~~ 339 (1108)
..+... ......+.++...+.. -..+++-++|+|+++......+..+...+......+.+|++|.. ..+...+. ..
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 001100 0011112222222211 12356678999999877667788888887765556666665543 33332222 23
Q ss_pred ceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH-HHHHh
Q 001281 340 EHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA-KTLGG 396 (1108)
Q Consensus 340 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai-~~~~~ 396 (1108)
..+++.++++++....+.+.+...+-. +..+....|++.++|.+--+ ..+-.
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~-----i~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGRE-----AEPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 579999999999999998876533221 11266789999999988544 33333
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.8e-05 Score=87.48 Aligned_cols=176 Identities=14% Similarity=0.154 Sum_probs=116.1
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
..+.+|+++++++...|...-.+ ..+.-+.|+|..|.|||+.++.|.+.........+ +++|++-...+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG-ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC-CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 34899999999999887643222 22334889999999999999999997654321222 78999999999999999999
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhC--CceEEEEEeCCCCCChhhHHHHHhhhccCC-CCcEEEE--ecCchhhhhh---
Q 001281 264 ESITCKPCDLKALNEVQVQLQKALD--GKKFLLVLDDVWNENYSLWEDLKAPFLAAA-PNSKIIV--TTRHSHVAST--- 335 (1108)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~iiv--TtR~~~v~~~--- 335 (1108)
.+++..+.......+....+.+.+. ++.+++|||++..-....-+.+...+.... ..++|++ .+-+......
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 9997554444455566666666664 589999999984321111122222222222 2444433 3333332222
Q ss_pred -----ccccceeeCCCCChhhHHHHHHhhhcC
Q 001281 336 -----MGSVEHYNLSLLSDDDCWFVFMNHAFY 362 (1108)
Q Consensus 336 -----~~~~~~~~l~~L~~~~~~~lf~~~~~~ 362 (1108)
++. ..+..++-+.+|-.+.+..++-.
T Consensus 175 rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 175 RVKSSLGP-SEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred hhhhccCc-ceeeeCCCCHHHHHHHHHHHHHh
Confidence 233 34788999999999999888743
No 66
>PF13173 AAA_14: AAA domain
Probab=98.30 E-value=2.9e-06 Score=79.56 Aligned_cols=118 Identities=25% Similarity=0.310 Sum_probs=77.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
+++.|.|+.|+||||++++++.+.. ....+++++..+........ .+ ....+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 6899999999999999999997643 12456666655432211000 00 222333334447
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhhh-----c-cccceeeCCCCChhh
Q 001281 291 KFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAST-----M-GSVEHYNLSLLSDDD 351 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-----~-~~~~~~~l~~L~~~~ 351 (1108)
+.+|++|++... ..|......+....+..+|++|+........ + +....+++.||+-.|
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 889999999554 6788877777766677899999997655432 1 222467888888766
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.9e-05 Score=94.01 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=114.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHH--
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISM-- 260 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~-- 260 (1108)
-.++||.+.-+..|..++....- .+.+.++|+.|+||||+|+.+++...... ..... .+.....-..+..
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl----~HAyLFtGPpGtGKTTLARiLAk~Lnce~-~~~~~---pCg~C~sC~~i~~g~ 86 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRL----HHAYLFTGTRGVGKTSLARLFAKGLNCEQ-GVTAT---PCGVCSSCVEIAQGR 86 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC----CeEEEEECCCCCCHHHHHHHHHHhccCcc-CCCCC---CCCCchHHHHHhcCC
Confidence 35789999999999988865432 45668999999999999999987643211 10000 0000000000000
Q ss_pred -HHHHHhcCC-CCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhc
Q 001281 261 -ALLESITCK-PCDLKALNEVQVQLQK-ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTM 336 (1108)
Q Consensus 261 -~i~~~l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 336 (1108)
..+-.+... ......+.++...+.. -..+++-++|+|++..-....+..+...+.......++|++|.+. .+...+
T Consensus 87 ~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 87 FVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHH
Confidence 000000000 0011112222222211 124677899999998777778888888877666667777766553 333221
Q ss_pred -cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHH
Q 001281 337 -GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAK 392 (1108)
Q Consensus 337 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 392 (1108)
.-...|.+.+++.++....+.+.+....-. ..++....|++.++|.|--+.
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-----~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-----FEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 122679999999999998888765432111 112577899999999885443
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.7e-05 Score=91.60 Aligned_cols=193 Identities=13% Similarity=0.107 Sum_probs=113.2
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.++||.+..+..|..++..+.. .+.+.++|+.|+||||+|+.+.+..-... ++... .+..-..-+.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl----~HAyLF~GPpGvGKTTlAriLAK~LnC~~-------~~~~~-pCg~C~sC~~I 81 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRL----HHAYLFTGTRGVGKTTIARILAKCLNCET-------GVTST-PCEVCATCKAV 81 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHHhCCCc-------CCCCC-CCccCHHHHHH
Confidence 35789999999999999865432 46889999999999999998877532110 11000 00000000000
Q ss_pred HHHhc-----CCCCCcccHHHHHHHHHH----HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-h
Q 001281 263 LESIT-----CKPCDLKALNEVQVQLQK----ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-V 332 (1108)
Q Consensus 263 ~~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v 332 (1108)
...-. .........++....+.. -..+++-++|+|++..-+......+...+.....+.++|++|.+.. +
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 00000 000001112222211111 1235667899999977666677777777766566778888776532 2
Q ss_pred hhh-ccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHH
Q 001281 333 AST-MGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAK 392 (1108)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 392 (1108)
... ..-...+++.+++.++....+...+...+-. +..+....|++.++|.+-.+.
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-----id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-----ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 211 1223678999999999988887766433221 122567889999999774443
No 69
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=1.1e-06 Score=105.77 Aligned_cols=92 Identities=28% Similarity=0.412 Sum_probs=83.2
Q ss_pred cccEEEecCcccc-ccCcchhcCCCCcEEEeeCcccc-ccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeec
Q 001281 596 KLRVLSLEGYYVT-QLPNSIKELKLLRYLNVAGTQIR-SLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIE 673 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 673 (1108)
.++.|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 67999999999999999999998 789999999999999999998778999999999999999999
Q ss_pred CCCCCCcCCccCCC
Q 001281 674 GANSLEGMPYGMEK 687 (1108)
Q Consensus 674 ~~~~~~~lp~~i~~ 687 (1108)
+|.....+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99866678877654
No 70
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.25 E-value=1.8e-05 Score=94.34 Aligned_cols=203 Identities=18% Similarity=0.187 Sum_probs=119.0
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccccc---ceeEEEEeCCC---CCHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKF---DIKAWVCVSDE---FDVLS 257 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 257 (1108)
+.++|++..+..+.+.+.... ...+.|+|++|+||||+|+.+++...... .+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~-----~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~-~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF-----PQHIILYGPPGVGKTTAARLALEEAKKLK-HTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC-----CCeEEEECCCCCCHHHHHHHHHHhhhhcc-CCcccCCCCeEEEechhccCCHHH
Confidence 468999999999888774332 45799999999999999999987543221 11 12335544321 12222
Q ss_pred HHHHH---------------HHHhcCCCC----------------Cccc-HHHHHHHHHHHhCCceEEEEEeCCCCCChh
Q 001281 258 ISMAL---------------LESITCKPC----------------DLKA-LNEVQVQLQKALDGKKFLLVLDDVWNENYS 305 (1108)
Q Consensus 258 ~~~~i---------------~~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~ 305 (1108)
+...+ +...+.... +... ....+..+.+.+.++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 111111000 0011 123466788888889999998888877777
Q ss_pred hHHHHHhhhccCCCCcEEEE--ecCchhh-hhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHH
Q 001281 306 LWEDLKAPFLAAAPNSKIIV--TTRHSHV-ASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVV 381 (1108)
Q Consensus 306 ~~~~l~~~l~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~ 381 (1108)
.|+.+...+....+...|++ ||++... ...+ .-...+.+.+++.+|.+.++.+.+..... . +.+++...|.
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v--~---ls~eal~~L~ 382 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV--H---LAAGVEELIA 382 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHH
Confidence 78888776666555555555 5664331 1111 11246788999999999999887643211 1 1124455555
Q ss_pred HhcCCchHHHHHHHhh
Q 001281 382 QKCRGLPLAAKTLGGL 397 (1108)
Q Consensus 382 ~~c~glPLai~~~~~~ 397 (1108)
+.+..-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 5554445555555443
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.8e-08 Score=98.71 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=53.7
Q ss_pred cCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccc--cCCcCcceEEEEeCCCCCC
Q 001281 739 LCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIG--DLSFSKMEVLELQNCQNCT 816 (1108)
Q Consensus 739 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~L~~~~~~~ 816 (1108)
+.+++.|.+|+++||......... ....+ .++|+.|+++|+.-.-.-..+. ...+++|..|||++|...+
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv------~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTV------AVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhH------HHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 445566777777777654322111 11111 2567788888775321111111 1136889999999886654
Q ss_pred C--CCCCCCCCCccEEEecCCCCc
Q 001281 817 S--LPSLSMLGSLKQLTIKGMTRL 838 (1108)
Q Consensus 817 ~--l~~l~~l~~L~~L~L~~~~~l 838 (1108)
. +..+.+++.|++|.++.|+.+
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCC
Confidence 3 224678888888888888754
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.2e-05 Score=90.19 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=113.3
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.++||.+.-+..|..++....- .+.+.++|+.|+||||+|+.+++...... ... ...+....+-..+....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri----~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-~~~---~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKI----GHAYIFFGPRGVGKTTIARILAKRLNCEN-PIG---NEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHhcCccc-ccC---ccccCCCcHHHHHHccC
Confidence 35789999999999888865432 35688999999999999999987643211 000 00111111111111111
Q ss_pred HHH---hcC-CCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhhhhhc
Q 001281 263 LES---ITC-KPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHVASTM 336 (1108)
Q Consensus 263 ~~~---l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~ 336 (1108)
... +.. ......++.++...+... ..++.-++|+|++..-+.+.+..+...+........+|.+|.. ..+...+
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 000 000 000111222222222221 2456679999999877777888887777654455565555544 3333222
Q ss_pred c-ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHH
Q 001281 337 G-SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLA 390 (1108)
Q Consensus 337 ~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 390 (1108)
. -...|.+.+++.++..+.+.+.+...+-. +.++....|++.++|.+--
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~-----~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ-----YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCChHHH
Confidence 1 22569999999999888887766432211 1226778999999998743
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=4e-05 Score=88.12 Aligned_cols=197 Identities=16% Similarity=0.173 Sum_probs=113.7
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccc-eeEEEEeCCCCCHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFD-IKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 261 (1108)
-.+++|.+..+..+...+..... .+.+.++|+.|+||||+|+.+++..-... ... .-.+..+....+-..+...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri----~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~-~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRL----AGGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CceEEEECCCCCCHHHHHHHHHHHhcCcc-ccccCcCcCCCCCChHHHHHhcC
Confidence 34689999999988887755432 46788999999999999999987542211 000 0000000100000000000
Q ss_pred ---HHHHhcCCCCCcccHHHHHHHHHH----HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEE-ecCchhhh
Q 001281 262 ---LLESITCKPCDLKALNEVQVQLQK----ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIV-TTRHSHVA 333 (1108)
Q Consensus 262 ---i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~ 333 (1108)
-+..+.. ......+++...+.. -..+++-++|+|+++.-+...|..+...+......+.+|+ ||+...+.
T Consensus 95 ~h~Dv~eida--as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 95 NHPDIIEIDA--ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred CCCcEEEeec--cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 0000000 011112222222211 1245677899999988777788888888776666667665 44444444
Q ss_pred hhcc-ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 334 STMG-SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 334 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
..+. ....+++.+++.++....+...+...+.. +..+....|++.++|.+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-----ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-----TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 3332 22568999999999999998887543321 11256678999999976433
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.5e-05 Score=88.74 Aligned_cols=199 Identities=14% Similarity=0.109 Sum_probs=113.2
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.++||.+.-++.|..++....- .+.+.++|..|+||||+|+.+.+..-... . +..--+. +..+..-..-+.|
T Consensus 15 FddVIGQe~vv~~L~~al~~gRL----pHA~LFtGP~GvGKTTLAriLAkaLnC~~-p-~~~~g~~-~~PCG~C~sC~~I 87 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRL----HHAYLFTGTRGVGKTTLSRILAKSLNCTG-A-DGEGGIT-AQPCGQCRACTEI 87 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCC----ceEEEEECCCCCCHHHHHHHHHHHhcCCC-c-cccccCC-CCCCcccHHHHHH
Confidence 34789999999999999875542 46778999999999999998876542110 0 0000000 0000000000000
Q ss_pred HH-----HhcCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhh
Q 001281 263 LE-----SITCKPCDLKALNEVQVQLQKA----LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHV 332 (1108)
Q Consensus 263 ~~-----~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 332 (1108)
.. .+.........++++...+... ..++.-++|+|++..-+...+..+...+.....++++|++|.+ ..+
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 0000000111223322222221 2456679999999777777788888777665556666665554 444
Q ss_pred hhhcc-ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 333 ASTMG-SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 333 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
...+. -...+.+..++.++..+.+.+.+...... ...+....|++.++|.|.....
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-----~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-----HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 32221 22678999999999988887765322211 1114567899999998864443
No 75
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.21 E-value=3.9e-05 Score=85.50 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=106.6
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEe--CCCCCHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCV--SDEFDVLSISM 260 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~ 260 (1108)
-.+++|+++.++.+..++.... .+.+.++|..|+||||+|+.+.+...... +. ..++.+ +...... ...
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~-----~~~~ll~G~~G~GKt~~~~~l~~~l~~~~--~~-~~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKN-----MPHLLFAGPPGTGKTTAALALARELYGED--WR-ENFLELNASDERGID-VIR 86 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCC-----CCeEEEECCCCCCHHHHHHHHHHHHcCCc--cc-cceEEeccccccchH-HHH
Confidence 3468999999999999885432 34579999999999999999987643221 11 112222 2211111 111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhc-cc
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTM-GS 338 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~ 338 (1108)
..+..+.... -.....+-++++|++..-....+..+...+......+.+|+++... .+.... ..
T Consensus 87 ~~i~~~~~~~--------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTA--------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcC--------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111110000 0001345689999986554455566666665555567777776432 221111 12
Q ss_pred cceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 339 VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 339 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
...+.+.++++++....+...+...+-. +..+....+++.++|.+--+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~-----i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIE-----ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 2468899999999888888776433211 12267789999999987654
No 76
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.21 E-value=3e-06 Score=88.16 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=61.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC--CCHHHHHHHHHHHhcCCCCCcccH------HHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE--FDVLSISMALLESITCKPCDLKAL------NEVQV 281 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 281 (1108)
-..++|+|++|+|||||++.++++.... +|+.++|+.+.+. +++.++++.+...+-....+.+.. .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~--~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN--HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc--cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999986543 7999999997766 789999999833332222221111 11112
Q ss_pred HHHHH-hCCceEEEEEeCC
Q 001281 282 QLQKA-LDGKKFLLVLDDV 299 (1108)
Q Consensus 282 ~l~~~-l~~kr~LlVlDdv 299 (1108)
..... -.+++.++++|++
T Consensus 94 ~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHCCCCEEEEEECH
Confidence 22221 2589999999999
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.7e-06 Score=68.81 Aligned_cols=58 Identities=34% Similarity=0.489 Sum_probs=50.9
Q ss_pred CCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccc-hhccCCCCccEEeecCCC
Q 001281 618 KLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLP-SKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 618 ~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 676 (1108)
++|++|++++|+|+.+|. .+.++++|++|++++|. +..+| ..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999999999985 67999999999999876 55555 578999999999999986
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=98.20 E-value=4e-05 Score=84.54 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=105.1
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccc-eeEEEEeCCCCCHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFD-IKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 261 (1108)
-.+++|.++.++.+..++.... .+.+.++|++|+||||+|+.+++..... .|. .++-+..+...... ..+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~-----~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~eln~sd~~~~~-~vr~ 83 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGN-----MPNLILSGPPGTGKTTSILALAHELLGP--NYKEAVLELNASDDRGID-VVRN 83 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-----CceEEEECCCCCCHHHHHHHHHHHHhcc--cCccceeeecccccccHH-HHHH
Confidence 3468899988888887765432 3446799999999999999998764211 121 11111222211111 1111
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhcc-cc
Q 001281 262 LLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTMG-SV 339 (1108)
Q Consensus 262 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~-~~ 339 (1108)
+++.+..... ..-.++.-++++|++..-.......+...+......+++|+++... .+...+. -.
T Consensus 84 ~i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 84 KIKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 1111100000 0002456799999997665555566666665445567777777542 2221111 12
Q ss_pred ceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH
Q 001281 340 EHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL 389 (1108)
Q Consensus 340 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 389 (1108)
..+++.++++++....+...+...+-. +.++....|++.++|-.-
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~-----i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVP-----YVPEGLEAIIFTADGDMR 195 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHH
Confidence 568999999999988888776432221 122667899999998653
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=7e-05 Score=83.03 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=115.5
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc-ccce-eE-EEE--eCCCCCHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI-KFDI-KA-WVC--VSDEFDVLS 257 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~-~~-wv~--~~~~~~~~~ 257 (1108)
-.+++|.++..+.+.+.+..+.- .+.+-++|+.|+||+|+|..+.+..--... ..+. .. -.+ +...+.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl----~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~--- 90 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRL----HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP--- 90 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCC----CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh---
Confidence 45789999999999998876542 467889999999999999777654311100 0000 00 000 000000
Q ss_pred HHHHHHHHh-------cCC--C-----CCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCC
Q 001281 258 ISMALLESI-------TCK--P-----CDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAA 318 (1108)
Q Consensus 258 ~~~~i~~~l-------~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 318 (1108)
.-+.+...- ... . ...-.+++ ++.+.+.+ .+++-++|+|++..-+......+...+....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 011111000 000 0 01112333 33344443 2567799999997777777888887777665
Q ss_pred CCcEEEEecCchh-hhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 319 PNSKIIVTTRHSH-VASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 319 ~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
.++.+|++|.+.. +.... .-...+.+.+++.++..+.+........ . .....+++.++|.|.....+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~----~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----D----DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----H----HHHHHHHHHcCCCHHHHHHHh
Confidence 6677777776543 32222 2236799999999999999987642111 1 223678999999998665543
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5.5e-05 Score=87.56 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=113.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc------------------ccccee
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD------------------IKFDIK 244 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~ 244 (1108)
-.+++|.+..++.+...+..... .+.+.++|+.|+||||+|+.+++...... ..|...
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl----~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKV----HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 34789999999999988865432 46678999999999999999887432100 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEE
Q 001281 245 AWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKI 323 (1108)
Q Consensus 245 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 323 (1108)
+++.......+ .+..++...+... ..+++-++|+|++..-+...++.+...+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22211111111 1122222222211 2456779999999776667788888888766566666
Q ss_pred EEecCc-hhhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch-HHHHHHHhhh
Q 001281 324 IVTTRH-SHVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP-LAAKTLGGLL 398 (1108)
Q Consensus 324 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 398 (1108)
|++|.+ ..+...+ .-...+++.+++.++....+...+...+-. +.......|++.++|.+ .|+..+-.++
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-----~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN-----SDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 655543 3333222 223678999999999887777654322211 11256678999999955 4555554433
No 81
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=6.6e-05 Score=82.73 Aligned_cols=199 Identities=16% Similarity=0.161 Sum_probs=117.6
Q ss_pred cCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc-cccceeEEEEeCCCCCHHHHHH
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD-IKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
....++|.++..+.+...+..+.. .+.+.|+|+.|+||||+|..+.+..-... ..+... .....+......+
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl----~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKL----HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCC----CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 456789999999999999865542 46789999999999999988877542210 001110 0011111111222
Q ss_pred HHHHH-------hcCCC-C------CcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCc
Q 001281 261 ALLES-------ITCKP-C------DLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNS 321 (1108)
Q Consensus 261 ~i~~~-------l~~~~-~------~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 321 (1108)
.+... +..+. . ..-.+++. +.+.+++ .+++-++|+|++..-+......+...+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211 11000 0 01113333 3444444 3567799999998777777777777776554555
Q ss_pred EEEEec-Cchhhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 322 KIIVTT-RHSHVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 322 ~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
.+|++| +...+.... .-...+.+.+++.++..+++....... . ..++....+++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~--~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ--G-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc--C-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555544 433332222 122589999999999999998743211 1 112567789999999998665443
No 82
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=4e-06 Score=100.87 Aligned_cols=95 Identities=23% Similarity=0.418 Sum_probs=83.1
Q ss_pred hhhhhccCCCcccEEEecCcccc-ccCcchhcCCCCcEEEeeCcccc-ccchhhhcCccCcEeeecCCcCCcccchhccC
Q 001281 586 LLSDMLPKFKKLRVLSLEGYYVT-QLPNSIKELKLLRYLNVAGTQIR-SLPESTSSLMHLRVLILRDCSRLTRLPSKMWN 663 (1108)
Q Consensus 586 ~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~ 663 (1108)
.++..+.++++|+.|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..+++|++|++|+|++|.....+|..++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 34556889999999999999997 78999999999999999999998 78999999999999999999888899998876
Q ss_pred C-CCccEEeecCCCCCCc
Q 001281 664 L-INLRHLDIEGANSLEG 680 (1108)
Q Consensus 664 L-~~L~~L~l~~~~~~~~ 680 (1108)
+ .++..+++.+|..+-.
T Consensus 513 ~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 513 RLLHRASFNFTDNAGLCG 530 (623)
T ss_pred ccccCceEEecCCccccC
Confidence 4 5778899988864433
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.13 E-value=3e-05 Score=93.22 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=98.2
Q ss_pred CCceeccchhHH---HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 183 ERAVYGRDDDKA---KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 183 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
-.+|+|.+..+. .+.+.+... ....+.++|++|+||||+|+.+++.... .|. .++.....
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~-----~~~slLL~GPpGtGKTTLA~aIA~~~~~---~f~-----~lna~~~~---- 89 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD-----RVGSLILYGPPGVGKTTLARIIANHTRA---HFS-----SLNAVLAG---- 89 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHHhcC---cce-----eehhhhhh----
Confidence 346899988774 455555433 2456789999999999999999975432 331 11110000
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHh--CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEe--cCchh--hh
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKAL--DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVT--TRHSH--VA 333 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tR~~~--v~ 333 (1108)
..+..+......+.+ .+++.+||+||++.-+...++.+...+ ..|+.++|+ |.+.. +.
T Consensus 90 -------------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 90 -------------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred -------------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 001111112222222 246789999999766555666665443 235555553 33321 11
Q ss_pred hhc-cccceeeCCCCChhhHHHHHHhhhcCCCC--ccchhhhhhHHHHHHHHhcCCchH
Q 001281 334 STM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRD--HIHVQRISGLFHKKVVQKCRGLPL 389 (1108)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPL 389 (1108)
... .-...+.+++++.++...++.+.+..... ......+.++....|++.+.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 11356899999999999988876541100 000112333677888999988643
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=1.7e-05 Score=86.82 Aligned_cols=132 Identities=19% Similarity=0.194 Sum_probs=74.9
Q ss_pred CCcccEEeecCCCCCCCCCCCCCCCccEEEEccCCCccccCCCC-CcccEEEEeecCCccccCCCCCCCccEEEEecCCc
Q 001281 882 FSSLRELSILKCPKFSGKLPELLPSLEILVISKCADLVVPFSSF-PMLCRLEIEECKGITCSTPIDCKLIESMTISNSSL 960 (1108)
Q Consensus 882 ~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l-~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~ 960 (1108)
+.+++.|++++| .++ .+|...++|++|.+++|..+......+ ++|+.|++++|..+.. -.++|+.|+++.+.+
T Consensus 51 ~~~l~~L~Is~c-~L~-sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s----LP~sLe~L~L~~n~~ 124 (426)
T PRK15386 51 ARASGRLYIKDC-DIE-SLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG----LPESVRSLEIKGSAT 124 (426)
T ss_pred hcCCCEEEeCCC-CCc-ccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc----cccccceEEeCCCCC
Confidence 567777888877 564 667544568888888777764322223 4788888887765431 234677777765544
Q ss_pred ccccccCcccCCCCCCCCCCCCcEEEEcccCCCccccc-CCC-CCccEEEEeccCCccccccccCCcccCCCCCCCcEeE
Q 001281 961 QIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLK-QGF-QQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVS 1038 (1108)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~l-~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~ 1038 (1108)
..+.. -.++|+.|.+.++........ ..+ ++|++|++++|.. ..+|..+. .+|+.|+
T Consensus 125 ~~L~~------------LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~-------i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 125 DSIKN------------VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN-------IILPEKLP--ESLQSIT 183 (426)
T ss_pred ccccc------------CcchHhheeccccccccccccccccCCcccEEEecCCCc-------ccCccccc--ccCcEEE
Confidence 33211 234566666654322211111 122 4677888877774 22343333 4777777
Q ss_pred ee
Q 001281 1039 IE 1040 (1108)
Q Consensus 1039 l~ 1040 (1108)
++
T Consensus 184 ls 185 (426)
T PRK15386 184 LH 185 (426)
T ss_pred ec
Confidence 76
No 85
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=6.7e-05 Score=83.86 Aligned_cols=179 Identities=16% Similarity=0.159 Sum_probs=108.6
Q ss_pred CceeccchhHHHHHHHHhCCCC-----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc------------------cc
Q 001281 184 RAVYGRDDDKAKILDMVLSDDP-----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD------------------IK 240 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~ 240 (1108)
.+++|.+.-++.+..++..+.. +..-.+.+.++|+.|+|||++|+.+.+..-... .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999998875431 011256788999999999999988865321110 01
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhc
Q 001281 241 FDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFL 315 (1108)
Q Consensus 241 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 315 (1108)
.|. .++.... ....++++. .+.+.. .+++-++|+|++..-+......+...+.
T Consensus 85 pD~-~~i~~~~--------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PDV-RVVAPEG--------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCE-EEecccc--------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 111 1111100 001122221 122211 3455688889997666666667777776
Q ss_pred cCCCCcEEEEecCch-hhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 316 AAAPNSKIIVTTRHS-HVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 316 ~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
....+..+|++|.+. .+...+ .-...+.+.+++.++..+.+...... + + +.+..+++.++|.|.....
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--~----~----~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--D----P----ETARRAARASQGHIGRARR 212 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--C----H----HHHHHHHHHcCCCHHHHHH
Confidence 656677777766653 333222 22367999999999998888743211 0 1 5577899999999975544
Q ss_pred H
Q 001281 394 L 394 (1108)
Q Consensus 394 ~ 394 (1108)
+
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 3
No 86
>PRK08727 hypothetical protein; Validated
Probab=98.12 E-value=5.2e-05 Score=79.17 Aligned_cols=148 Identities=18% Similarity=0.074 Sum_probs=88.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
..+.|+|..|+|||+||+++++..... ...+.|+++.+ ....+. + ..+.+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~~~~------~~~~~~--------------~----~~~~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLPLQA------AAGRLR--------------D----ALEAL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEeHHH------hhhhHH--------------H----HHHHH-hc
Confidence 469999999999999999998764322 22445665322 111110 0 11111 12
Q ss_pred eEEEEEeCCCCCC-hhhHHH-HHhhhcc-CCCCcEEEEecCch---------hhhhhccccceeeCCCCChhhHHHHHHh
Q 001281 291 KFLLVLDDVWNEN-YSLWED-LKAPFLA-AAPNSKIIVTTRHS---------HVASTMGSVEHYNLSLLSDDDCWFVFMN 358 (1108)
Q Consensus 291 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 358 (1108)
.-+||+||+.... ...|.. +...+.. ...|..||+|++.. .+...+.....+.++++++++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999995331 123432 3332222 23466799999852 2223333446789999999999999998
Q ss_pred hhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 359 HAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
++....- .+.++....|++.++|-.-.+
T Consensus 174 ~a~~~~l-----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL-----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC-----CCCHHHHHHHHHhCCCCHHHH
Confidence 7754221 122367788899988755444
No 87
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=2.4e-05 Score=91.31 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=110.3
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHH-
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMA- 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~- 261 (1108)
-.++||.+..+..|..++..... .+.+.++|+.|+||||+|+.+.+..-... .. -+..+.....-..+...
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl----~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~-~~---~~~pCg~C~sCr~i~~g~ 86 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRL----HHAYLLTGTRGVGKTTIARILAKSLNCEN-AQ---HGEPCGVCQSCTQIDAGR 86 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCcHHHHHHHHHHHhcccC-CC---CCCCCcccHHHHHHhccC
Confidence 35799999999999999875432 46789999999999999998877532111 00 00000000000000000
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHH---H-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhc
Q 001281 262 LLESITCKPCDLKALNEVQVQLQK---A-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTM 336 (1108)
Q Consensus 262 i~~~l~~~~~~~~~~~~~~~~l~~---~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 336 (1108)
..+-+.........++.+...+.. . ..+++-++|+|++..-+......+...+......+++|++|.+. .+...+
T Consensus 87 ~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 87 YVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV 166 (709)
T ss_pred ccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHH
Confidence 000000000001112222221111 1 23566789999997655555666777776555567777777543 222221
Q ss_pred -cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHH
Q 001281 337 -GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAK 392 (1108)
Q Consensus 337 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 392 (1108)
+-...+.+..++.++....+.+.+...+-. +.++....|++.++|.+.-+.
T Consensus 167 rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-----id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 167 LSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-----YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHhCCCHHHHH
Confidence 222568888999999988888766433211 222567899999999874443
No 88
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.10 E-value=7.4e-05 Score=75.61 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=104.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+|||.++-++.+.-++......+..+--|-++|++|.||||||.-+++...+. + -++-+....-..-+..+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn---~----k~tsGp~leK~gDlaai 97 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN---L----KITSGPALEKPGDLAAI 97 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC---e----EecccccccChhhHHHH
Confidence 4579999999998877776555555667889999999999999999999976542 1 12211111111222222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhc--------cCCCCcEEE----------
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFL--------AAAPNSKII---------- 324 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--------~~~~gs~ii---------- 324 (1108)
+..+. ..=++.+|.++.-....-+-+..++. ..++++|.|
T Consensus 98 Lt~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 98 LTNLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred HhcCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 22221 22345556664433222222222211 122333332
Q ss_pred -EecCchhhhhhcccc--ceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 325 -VTTRHSHVASTMGSV--EHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 325 -vTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
-|||.-.+...+..- -+.+++..+.+|-.+...+.+..-.- ++.++.+.+|+++..|-|--..-+-
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-----~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-----EIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-----CCChHHHHHHHHhccCCcHHHHHHH
Confidence 488865444333221 35778889999998888887732221 1223678999999999996544333
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=9.3e-05 Score=84.90 Aligned_cols=189 Identities=16% Similarity=0.155 Sum_probs=109.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccc------------------ccee
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIK------------------FDIK 244 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~------------------f~~~ 244 (1108)
-.++||.+.....+...+..+.. .+.+.++|++|+||||+|+.+++........ +...
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l----~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSI----SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 35799999888888887765432 3568899999999999999997753211100 0001
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEE
Q 001281 245 AWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQK-ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKI 323 (1108)
Q Consensus 245 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 323 (1108)
..+..+...... ++.++...... -..+++-++|+|+++.-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGID------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHH------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 111111111111 11111111111 12356679999999654445566666666554444555
Q ss_pred EEecCc-hhhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCC-chHHHHHHHhhh
Q 001281 324 IVTTRH-SHVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRG-LPLAAKTLGGLL 398 (1108)
Q Consensus 324 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~l 398 (1108)
|++|.+ ..+...+ .....+.+.++++++....+...+....- .+.++....|++.++| ++.|+..+..+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-----~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-----EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 544443 3333322 22357899999999988888877643221 1222667888987765 567777776543
No 90
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=8.6e-05 Score=87.31 Aligned_cols=194 Identities=13% Similarity=0.116 Sum_probs=113.4
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.++||.+.-++.|...+....- .+.+.++|+.|+||||+|+.+.+..-... .+. ...+..-..-+.|
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl----~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~~~-------~~pCg~C~~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRL----HHAYLFSGTRGVGKTTIARLLAKGLNCET-GIT-------ATPCGECDNCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHhhhhcc-CCC-------CCCCCCCHHHHHH
Confidence 35789999999999988865432 35678999999999999999987532110 000 0000000111111
Q ss_pred HHH-------hcCC-CCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hh
Q 001281 263 LES-------ITCK-PCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HV 332 (1108)
Q Consensus 263 ~~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v 332 (1108)
... +... .....++.++...+... ..+++-++|+|++..-+......+...+.......++|.+|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 100 0000 00111122222222111 24667799999998777777888888777666666777666553 33
Q ss_pred hhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 333 ASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
...+ .-...|.+.+++.++..+.+...+....... .+.....|++.++|.+-.+..
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-----e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-----EPRALQLLARAADGSMRDALS 219 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHcCCCHHHHHH
Confidence 3221 1236799999999999888877653221111 115567899999997754433
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.07 E-value=0.00015 Score=82.17 Aligned_cols=184 Identities=15% Similarity=0.176 Sum_probs=109.6
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc-------------------cccce
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD-------------------IKFDI 243 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~ 243 (1108)
-.+++|.+..++.+...+.... -.+.+.++|+.|+||||+|+.+........ .+++.
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 3468999999999999886543 246788999999999999988876532110 01111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcE
Q 001281 244 KAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSK 322 (1108)
Q Consensus 244 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 322 (1108)
.++.-...... .+..++...+... ..+++-++|+|++..-.......+...+......+.
T Consensus 89 -~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 12211111111 1111222221111 224556889999855444556677777755555677
Q ss_pred EEEecCchh-hhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 323 IIVTTRHSH-VASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 323 iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
+|++|.+.. +...+ .....+.+.++++++..+.+...+...+-. +.++.+..+++.++|.|..+...
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-----i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-----IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCChHHHHHH
Confidence 777765433 22222 122568889999999888888766432211 12267788999999988665443
No 92
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.07 E-value=3.9e-05 Score=79.73 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=100.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
.+..+.+||++|+||||||+.+........ ..||..|....-..-.+.|+++-.. ...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S-----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS-----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc-----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 377889999999999999999998654322 5567777655444444555443221 12356
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEE--ecCchhhh---hhccccceeeCCCCChhhHHHHHHhhhc--
Q 001281 289 GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIV--TTRHSHVA---STMGSVEHYNLSLLSDDDCWFVFMNHAF-- 361 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~-- 361 (1108)
++|.+|.+|.|..-+..+.+. ++|....|.-++| ||.++..- ..+.-..++.++.|..++-..++.+-..
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999996654444333 3555677877776 66665331 1123336799999999998888877432
Q ss_pred -CCCC-ccc----hhhhhhHHHHHHHHhcCCchH
Q 001281 362 -YTRD-HIH----VQRISGLFHKKVVQKCRGLPL 389 (1108)
Q Consensus 362 -~~~~-~~~----~~~~~~~~~~~i~~~c~glPL 389 (1108)
.... ... ...+.+.+.+-++..|.|-.-
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 111 112444677778888888653
No 93
>PRK09087 hypothetical protein; Validated
Probab=98.06 E-value=0.0001 Score=76.26 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=87.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
.+.+.|+|+.|+|||+|++.++..... .+++.. .+...++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~------~~~~~~~~~---------------------~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA--------LLIHPN------EIGSDAANA---------------------AAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC--------EEecHH------HcchHHHHh---------------------hhc
Confidence 367899999999999999998875321 133221 111111111 111
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhhcc-CCCCcEEEEecCc---------hhhhhhccccceeeCCCCChhhHHHHHHhh
Q 001281 290 KKFLLVLDDVWNENYSLWEDLKAPFLA-AAPNSKIIVTTRH---------SHVASTMGSVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
-+|++||+..... .-+.+...+.. ...|..||+|++. +.....+.....++++++++++-.+++.+.
T Consensus 89 --~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 --GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred --CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 2788899943211 11223333322 2346779998873 334444455578999999999999999988
Q ss_pred hcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 360 AFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
+....- .+.+++..-|++.+.|..-++..+-
T Consensus 166 ~~~~~~-----~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADRQL-----YVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHcCC-----CCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 754221 1223778889999888777666433
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.06 E-value=0.00014 Score=73.52 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=63.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCc
Q 001281 289 GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDH 366 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 366 (1108)
+.+-++|+|++..-....++.+...+......+.+|++|++. .+...+ .....+.+.+++.++..+.+.... .+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g---i~- 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG---IS- 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC---CC-
Confidence 556789999996666667778888777656667777777653 222222 122579999999999888887761 11
Q ss_pred cchhhhhhHHHHHHHHhcCCchHH
Q 001281 367 IHVQRISGLFHKKVVQKCRGLPLA 390 (1108)
Q Consensus 367 ~~~~~~~~~~~~~i~~~c~glPLa 390 (1108)
+ +.+..|++.++|.|..
T Consensus 171 ---~----~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 171 ---E----EAAELLLALAGGSPGA 187 (188)
T ss_pred ---H----HHHHHHHHHcCCCccc
Confidence 1 6688999999998853
No 95
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.06 E-value=2.8e-06 Score=97.80 Aligned_cols=124 Identities=23% Similarity=0.330 Sum_probs=98.1
Q ss_pred CCCCceEEeeeeecCCCCCccchhhhhhhhccCCC-cccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhc
Q 001281 561 EVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFK-KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSS 639 (1108)
Q Consensus 561 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~ 639 (1108)
..+.+..+.+..+.. .. ++.....+. +|+.|++++|.+..+|..++.+++|+.|++++|++..+|...+.
T Consensus 114 ~~~~l~~L~l~~n~i--------~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 114 ELTNLTSLDLDNNNI--------TD-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred cccceeEEecCCccc--------cc-CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 345566666555443 11 222233443 89999999999999998899999999999999999999998889
Q ss_pred CccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCccC
Q 001281 640 LMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 640 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
+++|+.|++++| .+..+|..+..+..|+.|.+++|. ....+..+.+++++..|.
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 999999999996 588999988788889999999986 455666677777777664
No 96
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=6.2e-05 Score=87.05 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=111.1
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|++..++.+..++..... .+.+.++|+.|+||||+|+.+.+...... |.... .+..-...+.+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl----~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-------~~~~~-~Cg~C~sCr~i 82 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKL----THAYIFSGPRGIGKTSIAKIFAKAINCLN-------PKDGD-CCNSCSVCESI 82 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CceEEEECCCCCCHHHHHHHHHHHhcCCC-------CCCCC-CCcccHHHHHH
Confidence 35789999999999998865432 46788999999999999999877532111 11100 11100111111
Q ss_pred HHHh-------cCCC-CCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhh
Q 001281 263 LESI-------TCKP-CDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHV 332 (1108)
Q Consensus 263 ~~~l-------~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 332 (1108)
.... .... ....++.++...+... ..+++-++|+|++..-+...+..+...+......+.+|++|.. ..+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 1100 0000 0111112222211111 1234446999999766666777777777655556666655543 333
Q ss_pred hhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch-HHHHHHHh
Q 001281 333 ASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP-LAAKTLGG 396 (1108)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 396 (1108)
...+ .....+++.++++++....+...+...+.. +..+.+..+++.++|.+ .|+..+-.
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-----Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-----IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2221 223578999999999888887765432211 11256788999999965 45544444
No 97
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.06 E-value=7.2e-05 Score=84.30 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=100.4
Q ss_pred cCCceeccchhHHHHHHHHhCCCC--------CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDP--------SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF 253 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 253 (1108)
...++.|+++.++++.+.+...-. +-...+-+.++|++|+|||++|+++++.... .| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~---~~-----~~v~~-- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---TF-----IRVVG-- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC---CE-----Eecch--
Confidence 345789999999999887642211 1123456899999999999999999986532 22 22211
Q ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCC-----------ChhhHHHHHhhh---cc--
Q 001281 254 DVLSISMALLESITCKPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNE-----------NYSLWEDLKAPF---LA-- 316 (1108)
Q Consensus 254 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~~-- 316 (1108)
..+.... ++ ........+.+. -...+.+|++|+++.- +.+.+..+...+ ..
T Consensus 190 --~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 10 011111122222 2346789999998532 111122222222 21
Q ss_pred CCCCcEEEEecCchhhhh-hc----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 317 AAPNSKIIVTTRHSHVAS-TM----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 317 ~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
...+.+||.||....... .+ .-...+.++..+.++..++|..++.......+. ....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~------~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV------DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC------CHHHHHHHcCCCC
Confidence 134678888887543221 11 123568899999999999998877543322111 2357777777754
No 98
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.04 E-value=0.00012 Score=76.65 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=91.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
+.+.|+|+.|+|||+||+.+++.... ....+.++++..... ...+.. +.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~--------------------~~~~~~----~~~~~- 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW--------------------FVPEVL----EGMEQ- 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh--------------------hhHHHH----HHhhh-
Confidence 57899999999999999999875432 122345555532100 001111 11111
Q ss_pred eEEEEEeCCCCCC-hhhHHH-HHhhhcc-CCCC-cEEEEecCch---------hhhhhccccceeeCCCCChhhHHHHHH
Q 001281 291 KFLLVLDDVWNEN-YSLWED-LKAPFLA-AAPN-SKIIVTTRHS---------HVASTMGSVEHYNLSLLSDDDCWFVFM 357 (1108)
Q Consensus 291 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 357 (1108)
--+|++||+.... ...|+. +...+.. ...| .++|+||+.. .....+.....++++++++++-.+.+.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2378999995432 134543 2233322 1233 4799999853 233444555789999999999999888
Q ss_pred hhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHh
Q 001281 358 NHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGG 396 (1108)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 396 (1108)
+++.... - .+.+++..-|++.+.|..-++..+-.
T Consensus 178 ~~a~~~~--~---~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 178 LRARLRG--F---ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHcC--C---CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 7664321 1 12337788899999887655544433
No 99
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.03 E-value=7.6e-05 Score=78.18 Aligned_cols=172 Identities=17% Similarity=0.115 Sum_probs=95.8
Q ss_pred eccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 001281 187 YGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESI 266 (1108)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 266 (1108)
.|..+........+.... .....+.|+|..|+|||+||+.+++.....+ ....+++..... .. +
T Consensus 22 ~~~~~~~~~~l~~~~~~~---~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~------~~----~ 85 (227)
T PRK08903 22 AGENAELVARLRELAAGP---VADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPL------LA----F 85 (227)
T ss_pred cCCcHHHHHHHHHHHhcc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhH------HH----H
Confidence 355544444443332211 2245788999999999999999988642211 123444432211 00 0
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhcc-CCCCc-EEEEecCchhhhh--------hc
Q 001281 267 TCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLA-AAPNS-KIIVTTRHSHVAS--------TM 336 (1108)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~iivTtR~~~v~~--------~~ 336 (1108)
... ...-+||+||+..-+...-+.+...+.. ...+. .||+|++...... .+
T Consensus 86 ------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 86 ------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred ------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 011 2234788999954333333344444432 12344 4677776433221 22
Q ss_pred cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhh
Q 001281 337 GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLL 398 (1108)
Q Consensus 337 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 398 (1108)
.....+.++++++++-..++.+.+....- .+.++....+++.+.|.+..+..+-..+
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v-----~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGL-----QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22367899999998766666654322111 1222677888999999999887766655
No 100
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5.3e-06 Score=59.97 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=21.7
Q ss_pred cccEEEecCccccccCcchhcCCCCcEEEeeCcccccc
Q 001281 596 KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSL 633 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~l 633 (1108)
+|++|++++|.|+.+|..+++|++|++|++++|.|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45666666666666655566666666666666665544
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00012 Score=84.87 Aligned_cols=183 Identities=15% Similarity=0.105 Sum_probs=108.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc------------------ccccee
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD------------------IKFDIK 244 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~ 244 (1108)
-.++||-+.-++.+..++....- .+.+.++|+.|+||||+|+.+.+..-... ..+.-+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l----~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYL----HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCC----CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 34789999999999999865542 45678999999999999988887542111 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEE
Q 001281 245 AWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKII 324 (1108)
Q Consensus 245 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 324 (1108)
+.+..+....+.++ +++++.+.. .-..++.-++|+|+|..-+......+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22221111111111 111111110 0113566789999997766677777877777666677777
Q ss_pred EecCch-hhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 325 VTTRHS-HVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 325 vTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
++|.+. .+...+ .-...+++.+++.++....+...+...+-. +.++....|++.++|.+--+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-----~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-----FENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCcHHHH
Confidence 766543 332221 122568899999988777666555332211 11255678899999977544
No 102
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00011 Score=83.78 Aligned_cols=183 Identities=18% Similarity=0.156 Sum_probs=111.7
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc------------------ccccee
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD------------------IKFDIK 244 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~ 244 (1108)
-.++||.+..++.+...+..+.- .+.+-++|+.|+||||+|+.+....-... ..+.-+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri----~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKI----PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 35789999999888888765432 45788999999999999988875321000 001112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEE
Q 001281 245 AWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKII 324 (1108)
Q Consensus 245 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 324 (1108)
+.++.+....+.+ .+++++.... .-..+++-++|+|++..-+......+...+....+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 2232222222211 1112111110 0013566689999997666667777887777666677777
Q ss_pred EecCc-hhhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 325 VTTRH-SHVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 325 vTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
++|.. ..+...+ .-...+.+.+++.++....+...+...+.. +.++....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-----i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-----HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 66643 3443322 223678999999999988888776533221 12256788999999877533
No 103
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.00 E-value=1.2e-05 Score=86.80 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=65.5
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC--CHHHHHHHHHHHhcCCCCC
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF--DVLSISMALLESITCKPCD 272 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~ 272 (1108)
++++.+..-. .-.-..|+|++|+||||||++||++.... +|+.++||.+.+.. ++.++++.+...+-....+
T Consensus 158 rvID~l~PIG----kGQR~lIvgppGvGKTTLaK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG----KGQRGLIVAPPKAGKTVLLQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc----cCceEEEeCCCCCChhHHHHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 4555554322 23467899999999999999999986543 79999999998887 7777777776433222222
Q ss_pred cccHHH-----HHHHHHHH--hCCceEEEEEeCC
Q 001281 273 LKALNE-----VQVQLQKA--LDGKKFLLVLDDV 299 (1108)
Q Consensus 273 ~~~~~~-----~~~~l~~~--l~~kr~LlVlDdv 299 (1108)
...... ..-...++ -.+++++|++|++
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEECh
Confidence 221111 11111222 3679999999999
No 104
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.99 E-value=0.00022 Score=74.57 Aligned_cols=197 Identities=15% Similarity=0.120 Sum_probs=119.0
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc---ccceeEEEEeCCCCCHHHHHHHHHHHhc
Q 001281 191 DDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI---KFDIKAWVCVSDEFDVLSISMALLESIT 267 (1108)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 267 (1108)
+-++++.+++..+. ....+-+.|||.+|.|||++++.+.+....... .--.++.|.....++...++..|+.+++
T Consensus 44 ~~L~~L~~Ll~~P~--~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 44 EALDRLEELLEYPK--RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHHhCCc--ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 34556666665443 344677899999999999999999876532110 1124777888899999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHhCC-ceEEEEEeCCCCC---ChhhHHHHHhh---hccCCCCcEEEEecCchhhhhhcc---
Q 001281 268 CKPCDLKALNEVQVQLQKALDG-KKFLLVLDDVWNE---NYSLWEDLKAP---FLAAAPNSKIIVTTRHSHVASTMG--- 337 (1108)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~---l~~~~~gs~iivTtR~~~v~~~~~--- 337 (1108)
.+...............+.++. +--+||+|++.+- ...+-.++... +.+.-.=+-|.|-|++..-+-..+
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 9876666666666555566643 4458899999552 11222333333 333334456677776432221111
Q ss_pred --ccceeeCCCCChhh-HHHHHHhhhc--CCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 338 --SVEHYNLSLLSDDD-CWFVFMNHAF--YTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 338 --~~~~~~l~~L~~~~-~~~lf~~~~~--~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
-..++.++....++ ...|+..... .-..++.+. ..+.+..|...++|+.=-+
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~--~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLA--SPELARRIHERSEGLIGEL 258 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCC--CHHHHHHHHHHcCCchHHH
Confidence 12456666665544 4444433221 111122222 2278899999999986433
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00016 Score=84.91 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=110.6
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc-ccceeEEEEeCCCCCHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI-KFDIKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~ 261 (1108)
-.++||-+.-+..|..++....- .+.+.++|+.|+||||+|+.+.+..-..+. .......-.++.. ..-+.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl----~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~ 86 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRL----HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRD 86 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHH
Confidence 34789999888889888865542 467789999999999999988654321000 0000000000000 01111
Q ss_pred HHHH-----hcCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hh
Q 001281 262 LLES-----ITCKPCDLKALNEVQVQLQKA----LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SH 331 (1108)
Q Consensus 262 i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~ 331 (1108)
|... +.........+++....+... ..++.-++|+|+|+.-+...+..+...+......+++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1000 000000111122222222111 1345568999999877777788887777665566677766544 33
Q ss_pred hhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHH
Q 001281 332 VASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAK 392 (1108)
Q Consensus 332 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 392 (1108)
+.... .-...+.+..+++++..+.+...+...+-. +..+....|++.++|.+--+.
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-----ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-----AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 33222 223679999999999888887766432211 112567889999998764443
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00019 Score=83.96 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=109.5
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc------------------cccee
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI------------------KFDIK 244 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~ 244 (1108)
-.+++|.+.-++.+..++....- .+.+.++|+.|+||||+|+.+....-.... .|.-.
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~----~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRL----HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 34789999999999988865432 356789999999999999988765321100 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCC
Q 001281 245 AWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQK----ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPN 320 (1108)
Q Consensus 245 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 320 (1108)
+++..+.. ...+++...+.. -..+++-++|+|++..-+......+...+......
T Consensus 91 ~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 11211111 112222111111 11356779999999766666677777777665566
Q ss_pred cEEEEecCch-hhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH-HHHHHH
Q 001281 321 SKIIVTTRHS-HVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL-AAKTLG 395 (1108)
Q Consensus 321 s~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 395 (1108)
+.+|++|.+. .+...+ .-...+++..++.++....+.+.+...+-. ........|++.++|.+- |+..+-
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-----~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-----FDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6677666543 222211 112568899999999888777665322211 111556889999999764 444443
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00012 Score=83.18 Aligned_cols=202 Identities=12% Similarity=0.152 Sum_probs=112.2
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEE-eCCCCCHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVC-VSDEFDVLSISMA 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~ 261 (1108)
-.+++|.+.-++.+..++..+.. .+.+.++|+.|+||||+|+.+.+...... ..+...|.. ....+..-..-+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~----~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~-~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRV----GHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCc----ceeEEEECCCCCCHHHHHHHHHHHhcCCC-CcCcccccccCCCCCCCCHHHHH
Confidence 34789999999988888865432 45688999999999999998877542211 010000100 0000000000011
Q ss_pred HHHHhcC-----CCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEec-Cch
Q 001281 262 LLESITC-----KPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTT-RHS 330 (1108)
Q Consensus 262 i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~ 330 (1108)
+...... ........+++.. +.+.+ .+++-++|+|++..-+...++.+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 1100000 0001111222222 22222 3456688999997666667888888877666677766655 333
Q ss_pred hhhhhcc-ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH-HHHHHH
Q 001281 331 HVASTMG-SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL-AAKTLG 395 (1108)
Q Consensus 331 ~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 395 (1108)
.+...+. ....+++.++++++....+...+..... .+.++.+..|++.++|.+- |+..+-
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-----~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-----SVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3332221 1246889999999988877776532211 1223678899999999774 444333
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00019 Score=84.60 Aligned_cols=198 Identities=13% Similarity=0.122 Sum_probs=113.6
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccc-eeEEEEeCCCCCHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFD-IKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 261 (1108)
-.+++|.+..++.|...+..+.. .+.+.++|+.|+||||+|+.+.+..-.....-. ...+-.+... .--+.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri----~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~ 94 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRI----AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQA 94 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHH
Confidence 45789999999999998865532 457889999999999999999875422110000 0000000100 00111
Q ss_pred HHHHhcC-----CCCCcccHHH---HHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEec-Cchh
Q 001281 262 LLESITC-----KPCDLKALNE---VQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTT-RHSH 331 (1108)
Q Consensus 262 i~~~l~~-----~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 331 (1108)
|...-.. .......+++ +...++.. ..+++-++|+|++..-+......+...+......+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111100 0001111222 22222111 13455679999997666566777777777666677776655 3333
Q ss_pred hhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 332 VASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 332 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
+...+ .-...+.+..+++++....+.+.+...... +..+....|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-----i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-----VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 33222 122578999999999988888776432211 1225678899999998865543
No 109
>PRK05642 DNA replication initiation factor; Validated
Probab=97.92 E-value=0.0002 Score=74.77 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=92.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
..+.|+|..|+|||.||+++++.... .-..++|++..+ +... . ..+.+.+.+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 57899999999999999999875322 112456665432 1110 0 1122223222
Q ss_pred eEEEEEeCCCCCC-hhhHHH-HHhhhcc-CCCCcEEEEecCchh---------hhhhccccceeeCCCCChhhHHHHHHh
Q 001281 291 KFLLVLDDVWNEN-YSLWED-LKAPFLA-AAPNSKIIVTTRHSH---------VASTMGSVEHYNLSLLSDDDCWFVFMN 358 (1108)
Q Consensus 291 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 358 (1108)
. +||+||+.... ...|+. +...+.. ...|..||+|++... ....+.....++++++++++-.+.+..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67889995321 234543 4444432 235678899887422 122233345688999999999999986
Q ss_pred hhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhh
Q 001281 359 HAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLL 398 (1108)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 398 (1108)
++.... . .+.+++..-|++.+.|..-++..+-..|
T Consensus 178 ka~~~~--~---~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG--L---HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC--C---CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 664321 1 1223778889999988766655444333
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00019 Score=85.74 Aligned_cols=196 Identities=13% Similarity=0.137 Sum_probs=112.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|.+.-++.|..++.... -.+.+.++|+.|+||||+|+.+.+...... ... -...+..-...+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~-~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR----VAHAYLFTGPRGVGKTSTARILAKAVNCTT-NDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC----CceEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC------CCCCCccCHHHHHH
Confidence 3478999999999988886543 235678999999999999999886532110 000 00011111222222
Q ss_pred HHHhcCC-----CCCcccHHHH---HHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhh
Q 001281 263 LESITCK-----PCDLKALNEV---QVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHV 332 (1108)
Q Consensus 263 ~~~l~~~-----~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 332 (1108)
....... .......++. ...+... ..+++-++|+|++..-+.+..+.+...+......+.+|+++.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 2211110 0011112222 2211111 1245678999999655556677777776665556677766643 333
Q ss_pred hhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 333 ASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
...+ .-...+.+..++.++....+...+...+.. +..+.+..|++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-----i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-----LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2222 122568888999998888887766432211 12266789999999988655433
No 111
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.91 E-value=5.5e-07 Score=93.16 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=61.0
Q ss_pred hhhhccCCCcccEEEecCcccc-----ccCcchhcCCCCcEEEeeCc----cccccchh-------hhcCccCcEeeecC
Q 001281 587 LSDMLPKFKKLRVLSLEGYYVT-----QLPNSIKELKLLRYLNVAGT----QIRSLPES-------TSSLMHLRVLILRD 650 (1108)
Q Consensus 587 ~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~Ls~~----~i~~lp~~-------i~~L~~L~~L~l~~ 650 (1108)
.......+..+..|+|++|.+. .+-+.+.+.++|+.-+++.- ...++|+. +-..++|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3345667889999999999975 34556777889999888863 12255543 34566888888888
Q ss_pred CcCCcccch----hccCCCCccEEeecCCC
Q 001281 651 CSRLTRLPS----KMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 651 ~~~~~~lp~----~i~~L~~L~~L~l~~~~ 676 (1108)
|-.-..-+. -+.++..|+||.|.+|.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 754333332 34567788888887775
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00028 Score=82.25 Aligned_cols=199 Identities=12% Similarity=0.138 Sum_probs=114.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|.+..++.|..++..... .+.+.++|+.|+||||+|+.+.+..-... ..+. ..+..-..-+.+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri----~ha~Lf~GPpG~GKTtiArilAk~L~C~~-~~~~-------~pCg~C~sC~~i 82 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRV----APAYLFSGTRGVGKTTIARIFAKALNCET-APTG-------EPCNTCEQCRKV 82 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCC----CceEEEECCCCCCHHHHHHHHHHhccccC-CCCC-------CCCcccHHHHHH
Confidence 34689998888888888865432 46788999999999999998887643211 0000 000000011111
Q ss_pred HHHhc-------C-CCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhh
Q 001281 263 LESIT-------C-KPCDLKALNEVQVQLQK-ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHV 332 (1108)
Q Consensus 263 ~~~l~-------~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 332 (1108)
..... . ..........+...+.. -..+++-+||+|++..-+...+..+...+........+|++|.. ..+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 11000 0 00001111111111111 12356679999999766666777787777654455666665554 333
Q ss_pred hhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc-hHHHHHHHhhh
Q 001281 333 ASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL-PLAAKTLGGLL 398 (1108)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~~l 398 (1108)
...+ .-...+++.++++++....+...+..... .+..+.+..|++.++|. -.|+..+...+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 12257899999999998888776543221 12226778899999995 46777776554
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=0.00018 Score=82.50 Aligned_cols=169 Identities=11% Similarity=0.030 Sum_probs=102.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
..-+.|+|..|+|||+|++++++...... .-..+++++ ..++...+...++... +....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-
Confidence 34588999999999999999988532211 112234443 3456666666654310 11223344443
Q ss_pred ceEEEEEeCCCCCC--hhhHHHHHhhhcc-CCCCcEEEEecCch---------hhhhhccccceeeCCCCChhhHHHHHH
Q 001281 290 KKFLLVLDDVWNEN--YSLWEDLKAPFLA-AAPNSKIIVTTRHS---------HVASTMGSVEHYNLSLLSDDDCWFVFM 357 (1108)
Q Consensus 290 kr~LlVlDdv~~~~--~~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 357 (1108)
..-+||+||+.... ....+.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 34488899995432 1222344444432 23455788887642 222333444568899999999999999
Q ss_pred hhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHh
Q 001281 358 NHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGG 396 (1108)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 396 (1108)
+++...+-.. .+.+++..-|++.++|.|-.+..+..
T Consensus 286 ~~~~~~gl~~---~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNIKQ---EVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCCCC---CCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 8875432111 23347889999999999987765543
No 114
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.87 E-value=0.00014 Score=80.72 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=85.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|.++..+.+..++..+. -..++.++|++|+||||+|+.+++.... . ...++.+. .... ..+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~----~~~~lll~G~~G~GKT~la~~l~~~~~~---~---~~~i~~~~-~~~~-~i~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR----IPNMLLHSPSPGTGKTTVAKALCNEVGA---E---VLFVNGSD-CRID-FVRNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC----CCeEEEeeCcCCCCHHHHHHHHHHHhCc---c---ceEeccCc-ccHH-HHHHH
Confidence 4578999999999999886432 2467888999999999999999885321 1 22333333 1111 11111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccCCCCcEEEEecCchh-hhhhc-ccc
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAAAPNSKIIVTTRHSH-VASTM-GSV 339 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~ 339 (1108)
+.... .. ..+.+.+-+||+||+... ..+..+.+...+.....++++|+||.... +...+ ...
T Consensus 88 l~~~~-------------~~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFA-------------ST--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHH-------------Hh--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 11100 00 001234568999999544 22333444444555566788999886532 11111 111
Q ss_pred ceeeCCCCChhhHHHHHHh
Q 001281 340 EHYNLSLLSDDDCWFVFMN 358 (1108)
Q Consensus 340 ~~~~l~~L~~~~~~~lf~~ 358 (1108)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 3566667777776655543
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.86 E-value=3.6e-05 Score=83.84 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=62.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC--CCHHHHHHHHHHHhcCCCCCccc-----H-HHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE--FDVLSISMALLESITCKPCDLKA-----L-NEVQV 281 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~-----~-~~~~~ 281 (1108)
-..++|+|++|+|||||++.+++..... +|+..+||.+.+. .++.++++.+...+-....+... . .....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n--hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN--HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc--CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3678999999999999999999976542 6999999999865 78999999985544333222211 1 11111
Q ss_pred HHHHH-hCCceEEEEEeCC
Q 001281 282 QLQKA-LDGKKFLLVLDDV 299 (1108)
Q Consensus 282 ~l~~~-l~~kr~LlVlDdv 299 (1108)
..... -.+++++|++|++
T Consensus 246 ~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHcCCCeEEEEECh
Confidence 11121 3689999999999
No 116
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.6e-07 Score=91.14 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=110.8
Q ss_pred CCccEEEEccCCCccc----cCCCCCcccEEEEeecCCcc--ccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCC
Q 001281 905 PSLEILVISKCADLVV----PFSSFPMLCRLEIEECKGIT--CSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDS 978 (1108)
Q Consensus 905 ~~L~~L~l~~~~~l~~----~~~~l~~L~~L~l~~c~~l~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 978 (1108)
+.|+.|++++...... .+..+..|+.|.+.++.--. ...+..-.+|+.|+++ .++.+...... --+.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls--m~sG~t~n~~~----ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS--MCSGFTENALQ----LLLSS 258 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc--cccccchhHHH----HHHHh
Confidence 3578888877554332 23346677777777765222 1234455677888877 33333222111 12346
Q ss_pred CCCCcEEEEcccCCCcccc----cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCcccccc-cccc
Q 001281 979 KSLPTSVTISNVLEFGKFL----KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSF-SEVI 1053 (1108)
Q Consensus 979 ~~~L~~L~l~~c~~l~~~~----~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~l-p~~~ 1053 (1108)
++.|.+|+|+.|.-.+... -..=++|+.|+|++|..- .+...+...-..+++|.+|+++ +|..++.= -..+
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---l~~sh~~tL~~rcp~l~~LDLS-D~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---LQKSHLSTLVRRCPNLVHLDLS-DSVMLKNDCFQEF 334 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---hhhhHHHHHHHhCCceeeeccc-cccccCchHHHHH
Confidence 7888888888876554432 122356888888887530 0012222233568999999999 99888762 2245
Q ss_pred ccCCCcceEecccccCCCCCccc--CCCCCCCccEEeeecC
Q 001281 1054 FLMNNLRYLKIENSRALKSLPQE--VMGNNAQLEKLFIKYC 1092 (1108)
Q Consensus 1054 ~~l~~L~~L~l~~c~~l~~lp~~--~l~~l~~L~~L~l~~c 1092 (1108)
+.++.|++|.++.|..| +|.. .+...|+|.+|++.+|
T Consensus 335 ~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 57999999999999876 3432 3567899999999986
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00051 Score=77.79 Aligned_cols=187 Identities=14% Similarity=0.175 Sum_probs=106.3
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc-----cccceeE-EEEeCCCCCHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD-----IKFDIKA-WVCVSDEFDVL 256 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~~f~~~~-wv~~~~~~~~~ 256 (1108)
-.+++|.+...+.+...+.... -.+.+.++|+.|+||||+|+.+.+...... ..|...+ -+........
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 3468999999999999886543 246888999999999999998877532110 0111111 0110000001
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecC-chhhhhh
Q 001281 257 SISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTR-HSHVAST 335 (1108)
Q Consensus 257 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~ 335 (1108)
+..+.+++++.. .-..+++-++++|++..-....+..+...+......+.+|++|. ...+...
T Consensus 91 ~~i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111111111110 01124556899999965544556666666654444556665553 3233222
Q ss_pred c-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH-HHHHHH
Q 001281 336 M-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL-AAKTLG 395 (1108)
Q Consensus 336 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 395 (1108)
. .....+++.++++++....+...+...+- .+..+....+++.++|.+- ++..+-
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-----~i~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-----KFEDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1 22246889999999988888876643221 1122677889999998654 433433
No 118
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.84 E-value=0.00018 Score=74.08 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=100.9
Q ss_pred eeccch-hHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHH
Q 001281 186 VYGRDD-DKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLE 264 (1108)
Q Consensus 186 ~vGr~~-~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 264 (1108)
++|... ..-.....+..... .....+.|+|..|+|||.|.+++++...... .-..+++++ ..++...+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~--~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPG--ERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTT--TSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEE------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCC--CCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeec------HHHHHHHHHH
Confidence 456532 23344444443321 2344578999999999999999998653211 112344543 3455555555
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-hhHHH-HHhhhcc-CCCCcEEEEecCch---------hh
Q 001281 265 SITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENY-SLWED-LKAPFLA-AAPNSKIIVTTRHS---------HV 332 (1108)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v 332 (1108)
.+... .. ..+.+.++ .-=+|++||++.-.. ..|.+ +...+.. ...|-+||+|++.. ..
T Consensus 82 ~~~~~-----~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRDG-----EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHTT-----SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHcc-----cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 55431 11 22334444 344788999954322 22333 3333322 23567899999642 22
Q ss_pred hhhccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 333 ASTMGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 333 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
...+...-.++++++++++..+++.+.+....-. +.++++.-|++.+.+..-.+..+
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~-----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE-----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT-------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC-----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 3334445679999999999999999888543321 22367788888887766555443
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00054 Score=81.24 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=110.2
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccce-eEEE---EeCCCCCHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDI-KAWV---CVSDEFDVLSI 258 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv---~~~~~~~~~~~ 258 (1108)
-.+++|.+..++.+...+..... .+.+.++|+.|+||||+|+.++...-.......+ -+-. +....+++.
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl----~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKI----SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 34789999999999998865432 4677899999999999999887643211100000 0000 000000000
Q ss_pred HHHHHHHhcC-CCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEec-Cchhhhhh
Q 001281 259 SMALLESITC-KPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTT-RHSHVAST 335 (1108)
Q Consensus 259 ~~~i~~~l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 335 (1108)
.+.. ......++.++...+... ..+++-++|+|++..-....+..+...+......+.+|++| +...+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 000111122222222211 23566799999997666677778877776555555555444 44444332
Q ss_pred c-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH-HHHHHH
Q 001281 336 M-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL-AAKTLG 395 (1108)
Q Consensus 336 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 395 (1108)
+ .-...+.+.+++.++....+...+...+-. +..+.+..|++.++|.+- |+..+.
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-----id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENIS-----YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 223579999999999888887655322211 111567789999998664 444443
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00094 Score=77.06 Aligned_cols=181 Identities=11% Similarity=0.132 Sum_probs=111.5
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc-------------------cccce
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD-------------------IKFDI 243 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~ 243 (1108)
-.+++|-+..++.+...+.... -.++..++|+.|+||||+|+.+.+..-... .+++
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 3478999999999998886543 246778999999999999997766431100 0111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhhHHHHHhhhccCCC
Q 001281 244 KAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKA----LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAP 319 (1108)
Q Consensus 244 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 319 (1108)
++.+..+.. ...+++...+... ..+++-++|+|++..-+.+....+...+.....
T Consensus 88 v~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 111111100 1122222222110 124566899999977777777788877776666
Q ss_pred CcEEEEecCch-hhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 320 NSKIIVTTRHS-HVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 320 gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
.+++|++|.+. .+.... .-...+++.+++.++....+...+...+-. +..+.+..|++.++|.+--+..+
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-----i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-----YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCcHHHHHHH
Confidence 77777777653 222111 122578999999999888887665432211 11267789999999988544433
No 121
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00049 Score=84.02 Aligned_cols=192 Identities=14% Similarity=0.082 Sum_probs=110.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.++||.+..++.|..++..... .+.+.++|+.|+||||+|+.+.+..-... ..... .+..+.+ -+.|
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri----~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~-~~~~~---pCg~C~s----C~~~ 81 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRI----NHAYLFSGPRGCGKTSSARILARSLNCVE-GPTST---PCGECDS----CVAL 81 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC----CceEEEECCCCCCHHHHHHHHHHHhCccc-CCCCC---CCcccHH----HHHH
Confidence 34789999999999999865432 35788999999999999998877543111 00000 0000000 0000
Q ss_pred HHH---------hcC-CCCCcccHHHHHHHHH-HHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-h
Q 001281 263 LES---------ITC-KPCDLKALNEVQVQLQ-KALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-S 330 (1108)
Q Consensus 263 ~~~---------l~~-~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~ 330 (1108)
... +.. .....+++.++...+. .-..+++-++|||++..-+...+..|...+......+.+|++|.+ .
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 000 000 0001111122211111 112456668899999777777788888888776667777766643 3
Q ss_pred hhhhhcc-ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 331 HVASTMG-SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 331 ~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
.+...+. -...|++..++.++..+.+.+.+...... +..+....|++.++|.+..+
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-----id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-----VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 3433322 23678999999999888777654322211 11255678999999977433
No 122
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=2.7e-06 Score=88.22 Aligned_cols=116 Identities=21% Similarity=0.207 Sum_probs=73.2
Q ss_pred ccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcc----ccccCcc-------hhcCCCCcEEEe
Q 001281 557 ESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYY----VTQLPNS-------IKELKLLRYLNV 625 (1108)
Q Consensus 557 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~----i~~lp~~-------i~~l~~L~~L~L 625 (1108)
+....+..+..+.+.++..+.. ....+...+.+.+.||.-++++-. ..++|+. +..+++|++|+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~E----Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTE----AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred HHhcccCceEEEeccCCchhHH----HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 3445666777777766654221 234455667788899999998754 2345543 456679999999
Q ss_pred eCcccc-----ccchhhhcCccCcEeeecCCcCCccc-------------chhccCCCCccEEeecCCC
Q 001281 626 AGTQIR-----SLPESTSSLMHLRVLILRDCSRLTRL-------------PSKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 626 s~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~l-------------p~~i~~L~~L~~L~l~~~~ 676 (1108)
|.|-+. .+-.-+..+..|+.|.|.+|..-..- -..+.+-++||.+....|.
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 999665 22234577899999999988532111 1123344667777766665
No 123
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.7e-05 Score=56.28 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=28.9
Q ss_pred CCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccc
Q 001281 618 KLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLP 658 (1108)
Q Consensus 618 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp 658 (1108)
++|++|++++|+|+.+|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 46888888888888888778888888888888864 44444
No 124
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=2.6e-05 Score=85.40 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=82.8
Q ss_pred CCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCCCccEEEEeccCCccccccccC
Q 001281 944 PIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDK 1023 (1108)
Q Consensus 944 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 1023 (1108)
+..+..++.|+++++.+..+. .-.++|++|++++|..++.+|....++|+.|++++|.. +..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP------------~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~------L~s 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP------------VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPE------ISG 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC------------CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccc------ccc
Confidence 445789999999965443331 13567999999999999888744456899999999976 556
Q ss_pred CcccCCCCCCCcEeEee-ccCcccccccccccc------------------CCCcceEecccccCCCCCcccCCCCCCCc
Q 001281 1024 PEQGLHVLSSPEDVSIE-ENCMSLVSFSEVIFL------------------MNNLRYLKIENSRALKSLPQEVMGNNAQL 1084 (1108)
Q Consensus 1024 ~p~~l~~l~~L~~L~l~-~~c~~l~~lp~~~~~------------------l~~L~~L~l~~c~~l~~lp~~~l~~l~~L 1084 (1108)
+|. +|++|+++ ..|+.+..+|..+.. .++|++|++++|..+ .+|. .+ ..+|
T Consensus 110 LP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~-~L--P~SL 179 (426)
T PRK15386 110 LPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPE-KL--PESL 179 (426)
T ss_pred ccc------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcc-cc--cccC
Confidence 664 46666675 013345666653221 247888888888755 3554 33 3688
Q ss_pred cEEeeecC
Q 001281 1085 EKLFIKYC 1092 (1108)
Q Consensus 1085 ~~L~l~~c 1092 (1108)
++|+++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88888765
No 125
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.77 E-value=0.00017 Score=80.12 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=73.5
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
..++++.++..+.+...|... +.+.++|++|+|||++|+.+++...... .++.+.||+++..++..+++...
T Consensus 174 l~d~~i~e~~le~l~~~L~~~-------~~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK-------KNIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC-------CCEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeecccccHHHHhccc
Confidence 345788999999999998643 4678899999999999999998765444 67888999999888876655322
Q ss_pred HHHhcCCCCCcccHH-HHHHHHHHHh--CCceEEEEEeCCCCCCh
Q 001281 263 LESITCKPCDLKALN-EVQVQLQKAL--DGKKFLLVLDDVWNENY 304 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~-~~~~~l~~~l--~~kr~LlVlDdv~~~~~ 304 (1108)
........-.. -..+.+.+.. .+++++||+|++...+.
T Consensus 246 ----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 246 ----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred ----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 11111111111 1112222222 24689999999965543
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00064 Score=80.31 Aligned_cols=203 Identities=13% Similarity=0.140 Sum_probs=110.8
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEE-eCCCCCHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVC-VSDEFDVLSISMA 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~ 261 (1108)
-.+++|.+..+..+...+..+.. .+.+.++|+.|+||||+|+.+.+..-... ..+.-.|-. +...+..-..-+.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri----~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~-~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRV----GHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CeeEEEECCCCCCHHHHHHHHHHHhCCCC-cCCccccccccCCCCccCHHHHH
Confidence 34789999999999888865432 45688999999999999988876542211 110000110 0000000000011
Q ss_pred HHHHhcC-----CCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEec-Cchh
Q 001281 262 LLESITC-----KPCDLKALNEVQVQLQKA----LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTT-RHSH 331 (1108)
Q Consensus 262 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 331 (1108)
+...-.. .......++++...+... ..+++-++|+|++..-+....+.+...+......+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1000000 000111123332221111 23455678999997666566777777776655556655555 4334
Q ss_pred hhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch-HHHHHHH
Q 001281 332 VASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP-LAAKTLG 395 (1108)
Q Consensus 332 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 395 (1108)
+...+ .....+++.+++.++....+...+...+. .+..+.+..|++.++|.. .|+..+-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-----~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-----QIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 43322 22367899999999988777765532221 122267889999999954 4444443
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00088 Score=78.58 Aligned_cols=199 Identities=15% Similarity=0.106 Sum_probs=114.5
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|.+.-++.|..++..+. -.+.+.++|+.|+||||+|+.+.+..--.. ..+ +-.++... .-+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-~~~---~~pCg~C~----~C~~i 79 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR----INHAYLFSGPRGCGKTSSARILARSLNCAQ-GPT---ATPCGVCE----SCVAL 79 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcccc-CCC---CCcccccH----HHHHh
Confidence 3478999999999999986543 245678999999999999998887532110 000 00000000 00000
Q ss_pred HHH---------hcCC-CCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-h
Q 001281 263 LES---------ITCK-PCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-S 330 (1108)
Q Consensus 263 ~~~---------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~ 330 (1108)
... +... .....+..++...+... ..+++-++|+|++..-+......+...+......+.+|++|.+ .
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000 0000 00111222222222111 1345668899999777777788888887766666666665543 3
Q ss_pred hhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch-HHHHHHHhhh
Q 001281 331 HVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP-LAAKTLGGLL 398 (1108)
Q Consensus 331 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 398 (1108)
.+...+ .-...+.+..++.++..+.+...+...+.. +.++....|++.++|.+ -|+..+-.++
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-----i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-----VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333322 223679999999999888887765432211 11256678899999976 4555554444
No 128
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.76 E-value=0.00025 Score=72.75 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=115.2
Q ss_pred cCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeE-EEEeCCCCCHHHHHH
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKA-WVCVSDEFDVLSISM 260 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~ 260 (1108)
.-.+++|.+..+..+...+.... .++...+|++|.|||+.|..+++..-..+ -|.+++ =.++|...... +.
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~-----lp~~LFyGPpGTGKTStalafar~L~~~~-~~~~rvl~lnaSderGis-vv- 105 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRI-----LPHYLFYGPPGTGKTSTALAFARALNCEQ-LFPCRVLELNASDERGIS-VV- 105 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcC-----CceEEeeCCCCCcHhHHHHHHHHHhcCcc-ccccchhhhccccccccc-ch-
Confidence 34578999999999999887632 67889999999999999988887643333 344333 22333221111 00
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHh--CCce-EEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhhhhhc
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKAL--DGKK-FLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHVASTM 336 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~ 336 (1108)
.....+.+.+.....+.. .-++ -.+|||++..-..+.|..+...+......++.|..+.. ..+...+
T Consensus 106 ---------r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 106 ---------REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred ---------hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 000011111111000000 1123 47889999888889999999998887777776655543 2222221
Q ss_pred c-ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc-hHHHHHH
Q 001281 337 G-SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL-PLAAKTL 394 (1108)
Q Consensus 337 ~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 394 (1108)
. -...+..++|.+++..+-+...+-..+-. +.++..+.|++.++|- --|+.++
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~-----~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVD-----IDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 1 11458899999999888888777543322 2225678899999883 3444333
No 129
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.76 E-value=0.00029 Score=79.63 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=97.0
Q ss_pred CCceeccchhHHHHHHHHhCCC--------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLSDD--------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
..++.|+++.++++.+.+..+- .+-..++-|.++|++|+|||++|+++++.... . |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~---~-----~i~v~~--- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---T-----FIRVVG--- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC---C-----EEEeeh---
Confidence 4578999999999988763211 11133567899999999999999999986432 2 222221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCC-----------ChhhHHHHHhhhcc-----C
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNE-----------NYSLWEDLKAPFLA-----A 317 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~-----~ 317 (1108)
..+. ....+ ......+.+.+. -...+.+|++||+..- +.+.+..+...+.. .
T Consensus 199 -~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111 11100 011111222222 2356789999998431 11112223332211 1
Q ss_pred CCCcEEEEecCchhhhhh-c----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc
Q 001281 318 APNSKIIVTTRHSHVAST-M----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL 387 (1108)
Q Consensus 318 ~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 387 (1108)
..+..||.||........ + .-...+.++..+.++..++|..+.....-... .....+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~------~~~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD------VDLEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc------CCHHHHHHHcCCC
Confidence 235677878765432221 1 11356899999999999999877643322111 1234666666664
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00082 Score=77.18 Aligned_cols=185 Identities=13% Similarity=0.131 Sum_probs=108.2
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc--------------------cccc
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD--------------------IKFD 242 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~ 242 (1108)
-.+++|.+..++.+...+..... .+.+.++|+.|+||||+|+.+.+..-... .+++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i----~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRA----AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 34789999999999998865432 46788999999999999988876432110 0011
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCc
Q 001281 243 IKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQK-ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNS 321 (1108)
Q Consensus 243 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 321 (1108)
|+.+.... .....+..++...+.. -..+++-++|+|++..-..+..+.+...+......+
T Consensus 92 ---~~~i~g~~----------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 ---VLEIDGAS----------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred ---eEEeeccc----------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 11111000 0001111111111111 123567788999986555555666777766655566
Q ss_pred EEEEecCc-hhhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch-HHHHHHH
Q 001281 322 KIIVTTRH-SHVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP-LAAKTLG 395 (1108)
Q Consensus 322 ~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 395 (1108)
.+|++|.. ..+...+ .....+++.++++++....+...+...+-. +..+.+..|++.++|.+ .|+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-----i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-----TSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67766643 3332221 122568999999999888777665322211 12266789999999965 4544443
No 131
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=5e-06 Score=95.59 Aligned_cols=83 Identities=27% Similarity=0.343 Sum_probs=41.8
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+..++.|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++.+|. +..++. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccC-Cccchhhhcc
Confidence 4445555555555555555544345555555555555555544 224445555555555532 333322 3335555555
Q ss_pred eecCCC
Q 001281 671 DIEGAN 676 (1108)
Q Consensus 671 ~l~~~~ 676 (1108)
++++|.
T Consensus 168 ~l~~n~ 173 (414)
T KOG0531|consen 168 DLSYNR 173 (414)
T ss_pred cCCcch
Confidence 555554
No 132
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0013 Score=76.11 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=106.9
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc-c-----------------cceeE
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI-K-----------------FDIKA 245 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------f~~~~ 245 (1108)
.+++|.+.-+..+...+..... .+...++|+.|+||||+|+.++........ . +...+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i----~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRV----SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 4689999999999998865432 456778999999999999988764321000 0 00111
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEE
Q 001281 246 WVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKII 324 (1108)
Q Consensus 246 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 324 (1108)
++..+... ...+...+...+... ..+++-++|+|++..-.....+.+...+........+|
T Consensus 92 eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 92 EIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred EEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 11111000 111112222222111 23567799999996655566677777776555555666
Q ss_pred Eec-Cchhhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 325 VTT-RHSHVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 325 vTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
++| +...+...+ .....+.+.+++.++....+...+...+-. +..+.+..|++.++|.+-.+..
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-----id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-----YEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 555 433333221 122578899999999888887765432211 1115677889999997654433
No 133
>PF14516 AAA_35: AAA-like domain
Probab=97.74 E-value=0.0052 Score=67.90 Aligned_cols=200 Identities=10% Similarity=0.062 Sum_probs=117.1
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC-----CCHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE-----FDVLSI 258 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~ 258 (1108)
+..|.|...-+++.+.+..++ ..+.|.|+-.+|||+|...+.+..+..+ + ..+++++..- .+....
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~G------~~~~I~apRq~GKTSll~~l~~~l~~~~--~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQPG------SYIRIKAPRQMGKTSLLLRLLERLQQQG--Y-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcCC------CEEEEECcccCCHHHHHHHHHHHHHHCC--C-EEEEEEeecCCCcccCCHHHH
Confidence 346788866677777776543 5899999999999999999987765432 2 3557776542 245555
Q ss_pred HHHHHH----HhcCCCC-------CcccHHHHHHHHHHHh---CCceEEEEEeCCCCCCh--hhHHHHHhhhcc----CC
Q 001281 259 SMALLE----SITCKPC-------DLKALNEVQVQLQKAL---DGKKFLLVLDDVWNENY--SLWEDLKAPFLA----AA 318 (1108)
Q Consensus 259 ~~~i~~----~l~~~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~----~~ 318 (1108)
++.++. +++.... ...........+.+.+ .+++.+|++|++..--. ...+++...+.. ..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 555544 4443221 0001112222333332 26899999999843211 111233332221 11
Q ss_pred ----CCc--EEEEecCchhhhhh-----ccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc
Q 001281 319 ----PNS--KIIVTTRHSHVAST-----MGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL 387 (1108)
Q Consensus 319 ----~gs--~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 387 (1108)
... -|++.+........ ......+.|++++.+|...|..+.-..... ...++|...+||+
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~---------~~~~~l~~~tgGh 232 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQ---------EQLEQLMDWTGGH 232 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCH---------HHHHHHHHHHCCC
Confidence 111 22222211111111 112257899999999999998876432111 4478999999999
Q ss_pred hHHHHHHHhhhcCC
Q 001281 388 PLAAKTLGGLLRTK 401 (1108)
Q Consensus 388 PLai~~~~~~l~~~ 401 (1108)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999764
No 134
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.00048 Score=74.83 Aligned_cols=215 Identities=15% Similarity=0.101 Sum_probs=123.4
Q ss_pred cCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHH
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 261 (1108)
.+..++||+.|+..+..++...-. ....+.+.|.|.+|.|||.+...|+.+..... .-..++++++..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle-~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE-LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh-cccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccchHHHHHH
Confidence 356799999999999999865432 23457889999999999999999998865432 1124566666655566777777
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCC--ceEEEEEeCCCCCChhhHHHHHhhhcc-CCCCcEEEEecCchh------h
Q 001281 262 LLESITCKPCDLKALNEVQVQLQKALDG--KKFLLVLDDVWNENYSLWEDLKAPFLA-AAPNSKIIVTTRHSH------V 332 (1108)
Q Consensus 262 i~~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~------v 332 (1108)
|...+-..........+..+.+.+...+ ..+|+|+|..+.-....-+.+...|.+ .-+++++|+.--... .
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 7776621111111114445556666644 368999998832110111112222222 345666665322111 1
Q ss_pred hhhc-----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhh
Q 001281 333 ASTM-----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLL 398 (1108)
Q Consensus 333 ~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 398 (1108)
...+ .....+..++.+.++-.++|..+...............-.|++++.-.|.+--|+.+.-+.+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111 12256788999999999999988754433222220111334444444445555555544443
No 135
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0011 Score=78.87 Aligned_cols=182 Identities=15% Similarity=0.138 Sum_probs=109.5
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc--------------------cccc
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD--------------------IKFD 242 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~ 242 (1108)
-.+++|.+..++.+..++....- .+.+.++|+.|+||||+|+.+....-... .+|+
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l----~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKL----AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 34789999999999999865432 46788999999999999988766432100 0122
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcE
Q 001281 243 IKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSK 322 (1108)
Q Consensus 243 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 322 (1108)
. ..+..+....+.. .+.+++++... -..+++=++|+|++..-+...++.+...+......+.
T Consensus 92 ~-~~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1 1111111111111 11111111100 0124556889999977666778888888876656667
Q ss_pred EEEec-Cchhhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 323 IIVTT-RHSHVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 323 iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
+|++| +...+...+ .-...+++.++++++....+...+...+-. +..+.+..|++.++|..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-----i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-----AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 66555 444444332 223678999999999888887765432211 11256788999999966433
No 136
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=8.5e-06 Score=93.72 Aligned_cols=81 Identities=30% Similarity=0.450 Sum_probs=35.4
Q ss_pred cCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchh-ccCCCCccEE
Q 001281 592 PKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSK-MWNLINLRHL 670 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L 670 (1108)
..+.+|++|+|++|.|+.+. .+..+..|+.|++++|.|+.++ .+..+.+|+.+++++|. +..+... ...+.+|+.+
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred hhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCcch-hhhhhhhhhhhccchHHH
Confidence 34445555555555554442 2344444555555555544432 22334455555555433 2222221 2344444444
Q ss_pred eecCC
Q 001281 671 DIEGA 675 (1108)
Q Consensus 671 ~l~~~ 675 (1108)
.+.+|
T Consensus 192 ~l~~n 196 (414)
T KOG0531|consen 192 DLGGN 196 (414)
T ss_pred hccCC
Confidence 44444
No 137
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.68 E-value=0.0013 Score=69.81 Aligned_cols=169 Identities=16% Similarity=0.207 Sum_probs=104.6
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
++.|.+|+.+...+..++...+. .-+..|.|+|-.|.|||.+.+.+++.... ..+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~--~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC--TIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc--ccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHHH
Confidence 56788999999999888854432 23556799999999999999999987522 36899999999999999999
Q ss_pred HHHhcCCCCCcc-------cHHHHHHHHHH--HhC--CceEEEEEeCCCCCC---hhhHHHHHhhhccCCCCcEEEEecC
Q 001281 263 LESITCKPCDLK-------ALNEVQVQLQK--ALD--GKKFLLVLDDVWNEN---YSLWEDLKAPFLAAAPNSKIIVTTR 328 (1108)
Q Consensus 263 ~~~l~~~~~~~~-------~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~---~~~~~~l~~~l~~~~~gs~iivTtR 328 (1108)
+.+.+....+.. +.......+.+ ... ++.++||||++..-. ......+.....-.....-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 999963222211 12223333333 122 468999999993321 1111111111111122344555554
Q ss_pred chhhh---hhcccc--ceeeCCCCChhhHHHHHHhh
Q 001281 329 HSHVA---STMGSV--EHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 329 ~~~v~---~~~~~~--~~~~l~~L~~~~~~~lf~~~ 359 (1108)
..... ..++.. .++..+.-+.+|..+++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 32222 212332 34566777888888877654
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0014 Score=77.91 Aligned_cols=195 Identities=13% Similarity=0.152 Sum_probs=109.2
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
..++|.+..++.|..++..... .+.+.++|+.|+||||+|+.+++..-... .+... ...+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl----~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~--~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI----APAYLFTGPRGTGKTSSARILAKSLNCLN--SDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC----CceEEEECCCCCChHHHHHHHHHHhcCCC--cCCCC----CCCCcccHHHHHHh
Confidence 4689999999999988865432 35678999999999999999987642211 00000 00111111111121
Q ss_pred HHhcC-----CCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhhh
Q 001281 264 ESITC-----KPCDLKALNEVQVQLQKA----LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHVA 333 (1108)
Q Consensus 264 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 333 (1108)
..... .......++++...+... ..+++-++|+|++..-+.+.+..+...+......+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11110 000111122222211111 1245668899999766666777887777655455655555543 3332
Q ss_pred hhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 334 STM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
..+ .-...+.+..++.++....+...+...... +..+.+..|++.++|.+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-----is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-----IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 222 122567888899988877777665432211 1125678899999997755443
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.63 E-value=0.00044 Score=85.69 Aligned_cols=183 Identities=14% Similarity=0.141 Sum_probs=95.6
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccc---ccccceeEE-EEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVS---DIKFDIKAW-VCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~w-v~~~~~~~~~~~~ 259 (1108)
..++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+++..... ..-.+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~-----~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~-------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR-----QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL-------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC-----cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh--------
Confidence 478999999999999886543 2345699999999999999988753211 001222332 22221
Q ss_pred HHHHHHhcCCCCCcccHHH-HHHHHHHHh-CCceEEEEEeCCCCCC-------hhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 260 MALLESITCKPCDLKALNE-VQVQLQKAL-DGKKFLLVLDDVWNEN-------YSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
+........+.++ +...+.+.- .+++.+|++|++..-. ..+...+..+... ...-++|-||...
T Consensus 254 ------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~~ 326 (852)
T TIGR03345 254 ------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTWA 326 (852)
T ss_pred ------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCHH
Confidence 0000000111111 111222221 2468999999984421 1111122222221 1235666666643
Q ss_pred hhhhhc-------cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc
Q 001281 331 HVASTM-------GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL 387 (1108)
Q Consensus 331 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 387 (1108)
...... .-...+.+++++.+++.+++......-..... ..+.++....+++.+.+.
T Consensus 327 e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~-v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHG-VLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCC-CeeCHHHHHHHHHHcccc
Confidence 321111 12357999999999999997544321111000 112335566777766654
No 140
>PRK06620 hypothetical protein; Validated
Probab=97.63 E-value=0.0016 Score=66.71 Aligned_cols=135 Identities=18% Similarity=0.107 Sum_probs=79.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
+.+.|+|++|+|||+|++.+++.... . ++. ..+.. + +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~---~-----~~~--~~~~~---------------------~-------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA---Y-----IIK--DIFFN---------------------E-------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC---E-----Ecc--hhhhc---------------------h-------hHHh-c
Confidence 57899999999999999998875321 1 111 00000 0 0111 2
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhhcc-CCCCcEEEEecCchh-------hhhhccccceeeCCCCChhhHHHHHHhhhcC
Q 001281 291 KFLLVLDDVWNENYSLWEDLKAPFLA-AAPNSKIIVTTRHSH-------VASTMGSVEHYNLSLLSDDDCWFVFMNHAFY 362 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 362 (1108)
.-++++||+..-.. ..+...+.. ...|..||+|++... ....+.....+.++++++++-..++.+.+..
T Consensus 86 ~d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 86 YNAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred CCEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 34788899953211 122222221 245678999988532 2223334457999999999988888777643
Q ss_pred CCCccchhhhhhHHHHHHHHhcCCchHHHH
Q 001281 363 TRDHIHVQRISGLFHKKVVQKCRGLPLAAK 392 (1108)
Q Consensus 363 ~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 392 (1108)
.. - .+.+++..-|++.+.|---.+.
T Consensus 163 ~~--l---~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 163 SS--V---TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred cC--C---CCCHHHHHHHHHHccCCHHHHH
Confidence 21 1 1223778888888887654443
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.61 E-value=0.00051 Score=84.62 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=85.2
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccc---ccccceeEEEEeCCCCCHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVS---DIKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+++..... ....+..+|. ++ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-----~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~--- 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-----KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGS--- 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-----CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHH---
Confidence 468999999999999886553 2345799999999999999998764211 1011333442 11 111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCC---------ChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKAL-DGKKFLLVLDDVWNE---------NYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
+... .. -..+.++....+.+.+ ..++.+|++|++..- +.+..+.+...+. . ..-++|-+|...
T Consensus 249 -l~a~---~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-~-g~i~~IgaTt~~ 321 (731)
T TIGR02639 249 -LLAG---TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-S-GKLRCIGSTTYE 321 (731)
T ss_pred -Hhhh---cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-C-CCeEEEEecCHH
Confidence 1110 00 0012222222333333 346889999998421 0111222332222 1 123555555432
Q ss_pred hhhhhc-------cccceeeCCCCChhhHHHHHHhhh
Q 001281 331 HVASTM-------GSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 331 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
+..... .-...+.++.++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 221111 123578999999999999988654
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0028 Score=74.63 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=111.1
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|-+..++.+...+....- .+.+.++|+.|+||||+|+.+++..-... .... ..+....+-. .+
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i----~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-~~~~---~pC~~C~~C~----~i 82 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKI----ANAYIFSGPRGVGKTSSARAFARCLNCVN-GPTP---MPCGECSSCK----SI 82 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHhhcccc-CCCC---CCCccchHHH----HH
Confidence 34789999999999999865432 46788999999999999999987642111 0000 0011111111 11
Q ss_pred HHHhcC-----CCCCcccHHHHHH---HHHH-HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhh
Q 001281 263 LESITC-----KPCDLKALNEVQV---QLQK-ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHV 332 (1108)
Q Consensus 263 ~~~l~~-----~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 332 (1108)
...-.. ........++... .+.. -..+++-++|+|++..-+...++.+...+......+.+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 000000 0000111222221 1111 12356668999999776666777887777765566777766644 333
Q ss_pred hhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 333 ASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
...+ .-...+++.+++.++..+.+...+....-. +..+.+..|++.++|.+-.+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-----id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-----YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 3222 122468899999999888887766432211 11266778999999977544
No 143
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.54 E-value=0.005 Score=62.11 Aligned_cols=180 Identities=17% Similarity=0.215 Sum_probs=109.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeC-CCCCHHHHHHHHHHHhcCCCCCc-c-cHHHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVS-DEFDVLSISMALLESITCKPCDL-K-ALNEVQVQLQKA 286 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~-~-~~~~~~~~l~~~ 286 (1108)
.+++.++|.-|.|||.+.++....... +.++-|.+. ...+...+...++..+...+.-. . -.+...+.+...
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~-----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNE-----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCC-----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 469999999999999999955543321 122224443 44567788888888887632211 1 122333334333
Q ss_pred h-CCce-EEEEEeCCCCCChhhHHHHHhhhccCCCCc---EEEEecCc---h----hhhhhcc-ccce-eeCCCCChhhH
Q 001281 287 L-DGKK-FLLVLDDVWNENYSLWEDLKAPFLAAAPNS---KIIVTTRH---S----HVASTMG-SVEH-YNLSLLSDDDC 352 (1108)
Q Consensus 287 l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtR~---~----~v~~~~~-~~~~-~~l~~L~~~~~ 352 (1108)
. +++| ..+++||..+......+.++....-...++ +|+..-.- . .+....+ -... |.+.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 5677 999999997776666666554433222222 22222111 0 0111111 1123 89999999999
Q ss_pred HHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHh
Q 001281 353 WFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGG 396 (1108)
Q Consensus 353 ~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 396 (1108)
..++..+..+...+.++. .++....|..+..|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~~l~--~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLF--SDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCcccC--ChhHHHHHHHHhccchHHHHHHHH
Confidence 888888876554443332 236678899999999999987664
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.51 E-value=0.0023 Score=73.44 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=92.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
...+.|+|..|+|||+||+++++...... .-..+++++. .++...+...+... ..+. +.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHHh
Confidence 35688999999999999999998653211 1123455543 33444455444321 1222 2233322
Q ss_pred ceEEEEEeCCCCCChh-hH-HHHHhhhcc-CCCCcEEEEecCc-hh--------hhhhccccceeeCCCCChhhHHHHHH
Q 001281 290 KKFLLVLDDVWNENYS-LW-EDLKAPFLA-AAPNSKIIVTTRH-SH--------VASTMGSVEHYNLSLLSDDDCWFVFM 357 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~ 357 (1108)
.-+||+||+...... .+ +.+...+.. ...|..+|+|+.. .. +...+.....+.+++.+.++-..++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 348899999543211 11 223333322 1245568887764 21 22223333468899999999999998
Q ss_pred hhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHH
Q 001281 358 NHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAK 392 (1108)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 392 (1108)
..+..... .+.+++...|++.+.|..-.+.
T Consensus 279 ~~~~~~~~-----~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 279 KKAEEEGL-----ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHcCC-----CCCHHHHHHHHHhcCCCHHHHH
Confidence 88754321 1223677888888888765443
No 145
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0028 Score=69.44 Aligned_cols=97 Identities=11% Similarity=0.149 Sum_probs=66.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-hhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCc
Q 001281 289 GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-VASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDH 366 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 366 (1108)
+++-++|+|++..-+......+...+.....++.+|+||.+.. +.... .-...+.+.+++++++.+.+........
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~-- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD-- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC--
Confidence 3444557799977777788888888876666778887777643 33222 2235689999999999988876531111
Q ss_pred cchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 367 IHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 367 ~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
+ +.+..++..++|.|.....+
T Consensus 183 ---~----~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---E----RERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---h----HHHHHHHHHcCCCHHHHHHH
Confidence 1 44567889999999765544
No 146
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.00076 Score=79.52 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=42.9
Q ss_pred ccCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 181 RTERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
....+++|-++.++++..++.....+....+++.|+|++|+||||+++.++...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 335679999999999999986543333334689999999999999999999764
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.50 E-value=0.00057 Score=85.23 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=85.2
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccc---cccccceeEEEEeCCCCCHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAV---SDIKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++..... ....-+..+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-----~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l-- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-----KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL-- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-----cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH--
Confidence 468999999999999996543 234569999999999999988876421 11011234442 1 11111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCC-------ChhhHHHHHhhhccCCCCcEEEEecCchhh
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNE-------NYSLWEDLKAPFLAAAPNSKIIVTTRHSHV 332 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~-------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 332 (1108)
+.+... ..+.++....+.+. -..++.+|++|++..- .......+..+.... ..-++|.+|.....
T Consensus 247 -----~ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey 319 (821)
T CHL00095 247 -----LAGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEY 319 (821)
T ss_pred -----hccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHH
Confidence 111111 11222222222222 2356899999998311 001122232222222 23456666665443
Q ss_pred hhhc-------cccceeeCCCCChhhHHHHHHhh
Q 001281 333 ASTM-------GSVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 333 ~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
.... .....+.++..+.++...++...
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 2211 22356788888888888777643
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0023 Score=76.08 Aligned_cols=198 Identities=15% Similarity=0.159 Sum_probs=110.1
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|.+.-+..+...+..... .+.+.++|+.|+||||+|+.+.+..-... ..+. ..+..-..-..|
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~----~hayLf~Gp~G~GKtt~A~~lak~l~c~~-~~~~-------~~c~~c~~c~~i 82 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRV----AHAFLFTGARGVGKTSTARILAKALNCEQ-GLTA-------EPCNVCPPCVEI 82 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHhhcCCC-CCCC-------CCCCccHHHHHH
Confidence 35789999999999988865432 46678999999999999988877532111 0000 000000000000
Q ss_pred HHH-------hcCC-CCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecC-chhh
Q 001281 263 LES-------ITCK-PCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTR-HSHV 332 (1108)
Q Consensus 263 ~~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v 332 (1108)
... +... .....+..++...+... ..+++-++|+|++..-+......+...+......+.+|++|. ...+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 000 0000 00111122222222111 134556889999976666667777777766556666765554 3444
Q ss_pred hhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch-HHHHHHHhh
Q 001281 333 ASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP-LAAKTLGGL 397 (1108)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~ 397 (1108)
...+ .-...+++..++.++....+...+...+-. +..+....|++.++|.. .|+..+-..
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-----i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-----ISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3322 122567888999988877776655322211 11256778999999855 555554333
No 149
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=6e-05 Score=76.33 Aligned_cols=77 Identities=26% Similarity=0.317 Sum_probs=35.8
Q ss_pred ccEEEecCccccccC--cch-hcCCCCcEEEeeCcccc---ccchhhhcCccCcEeeecCCcC---CcccchhccCCCCc
Q 001281 597 LRVLSLEGYYVTQLP--NSI-KELKLLRYLNVAGTQIR---SLPESTSSLMHLRVLILRDCSR---LTRLPSKMWNLINL 667 (1108)
Q Consensus 597 Lr~L~L~~~~i~~lp--~~i-~~l~~L~~L~Ls~~~i~---~lp~~i~~L~~L~~L~l~~~~~---~~~lp~~i~~L~~L 667 (1108)
+..|.+.++.|...- ..| ...++++.|||.+|.|+ ++-.-+.+|+.|++|+++.|.. ++.+| -.+.+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL 123 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence 334445555443221 112 23455666666666555 2223345566666666665432 12222 233456
Q ss_pred cEEeecCCC
Q 001281 668 RHLDIEGAN 676 (1108)
Q Consensus 668 ~~L~l~~~~ 676 (1108)
+.|-|.|+.
T Consensus 124 ~~lVLNgT~ 132 (418)
T KOG2982|consen 124 RVLVLNGTG 132 (418)
T ss_pred EEEEEcCCC
Confidence 666665543
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=3.1e-05 Score=78.30 Aligned_cols=85 Identities=22% Similarity=0.316 Sum_probs=62.3
Q ss_pred cCCCcccEEEecCccccc---cCcchhcCCCCcEEEeeCccccccchhh-hcCccCcEeeecCCcC-CcccchhccCCCC
Q 001281 592 PKFKKLRVLSLEGYYVTQ---LPNSIKELKLLRYLNVAGTQIRSLPEST-SSLMHLRVLILRDCSR-LTRLPSKMWNLIN 666 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~---lp~~i~~l~~L~~L~Ls~~~i~~lp~~i-~~L~~L~~L~l~~~~~-~~~lp~~i~~L~~ 666 (1108)
.....++.|||.+|.|+. +-.-+.++++|++|+|+.|.+..-..++ -.+.+|++|-|.+... .+.....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456789999999999874 3444578999999999999776332222 4677999999988432 1334455678888
Q ss_pred ccEEeecCCC
Q 001281 667 LRHLDIEGAN 676 (1108)
Q Consensus 667 L~~L~l~~~~ 676 (1108)
++.|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 8999888875
No 151
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0014 Score=75.34 Aligned_cols=160 Identities=16% Similarity=0.099 Sum_probs=93.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccc-eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFD-IKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
..-+.|+|..|+|||+||+++++..... +.+ .++|++. .++...+...+... ..++ +.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~--~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN--EPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh--CCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 3458999999999999999999865321 222 3556653 34555565555321 1222 233333
Q ss_pred CceEEEEEeCCCCCC-hhhH-HHHHhhhcc-CCCCcEEEEecC-chhh--------hhhccccceeeCCCCChhhHHHHH
Q 001281 289 GKKFLLVLDDVWNEN-YSLW-EDLKAPFLA-AAPNSKIIVTTR-HSHV--------ASTMGSVEHYNLSLLSDDDCWFVF 356 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf 356 (1108)
.+.-+|++||+..-. ...+ +.+...+.. ...|..||+||. .+.- ...+.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345689999995321 1111 233333322 123457888875 3221 122233356789999999999988
Q ss_pred HhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 357 MNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
.+.+....- .+.+++...|++.+.|.--.+
T Consensus 273 ~~~~~~~~~-----~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHG-----ELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCC-----CCCHHHHHHHHhccccCHHHH
Confidence 887753221 122367888888888764443
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0025 Score=69.41 Aligned_cols=196 Identities=14% Similarity=0.109 Sum_probs=111.6
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccc-------------cccccceeEEEEeC
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAV-------------SDIKFDIKAWVCVS 250 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~~f~~~~wv~~~ 250 (1108)
.+++|.++.++.+...+..+.- .+..-++|+.|+||+++|..+.+..-. ...|.| ..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl----~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRI----APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCC----CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecc
Confidence 3689999999999999866542 478999999999999999776554211 111222 2333211
Q ss_pred CCCCHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEE
Q 001281 251 DEFDVLSISMALLESITC--KPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKI 323 (1108)
Q Consensus 251 ~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 323 (1108)
...+-..+-..-++..+. .....-.+++. +.+.+.+ .+++-++|+|++..-+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000000111111110 00111112222 2333333 3567789999996666667777777776544 4455
Q ss_pred EEecC-chhhhhhcc-ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 324 IVTTR-HSHVASTMG-SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 324 ivTtR-~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
|++|. ...+..... -...+.+.++++++..+.+........ .. .....++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----ch----hHHHHHHHHcCCCHHHHHHH
Confidence 55544 333333322 236799999999999999987643211 01 11358899999999766543
No 153
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.44 E-value=0.00043 Score=65.50 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcc
Q 001281 213 IPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999753
No 154
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.38 E-value=3.2e-05 Score=69.07 Aligned_cols=92 Identities=26% Similarity=0.279 Sum_probs=66.4
Q ss_pred ccCCCcccEEEecCccccccCcchhc-CCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKE-LKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRH 669 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~-l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 669 (1108)
+.+...|...+|++|.+..+|+.|.. .+.+..|+|++|.|..+|..+..++.|+.|+++.| .+...|..+..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 44556677778888888888776643 34777888888888888888888888888888875 46667777777888888
Q ss_pred EeecCCCCCCcCCcc
Q 001281 670 LDIEGANSLEGMPYG 684 (1108)
Q Consensus 670 L~l~~~~~~~~lp~~ 684 (1108)
|+..+|. ...+|-.
T Consensus 128 Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENA-RAEIDVD 141 (177)
T ss_pred hcCCCCc-cccCcHH
Confidence 8777766 4455543
No 155
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.37 E-value=1.6e-05 Score=70.87 Aligned_cols=99 Identities=17% Similarity=0.292 Sum_probs=82.7
Q ss_pred CcccEEEecCccccccCcc---hhcCCCCcEEEeeCccccccchhhh-cCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 595 KKLRVLSLEGYYVTQLPNS---IKELKLLRYLNVAGTQIRSLPESTS-SLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~~---i~~l~~L~~L~Ls~~~i~~lp~~i~-~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+.+-.+||+.|.+-.+++. +....+|...+|++|.++.+|+.+. +.+.+.+|++++| .+.++|.++..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 4566789999987766554 4666788888999999999999885 4569999999995 689999999999999999
Q ss_pred eecCCCCCCcCCccCCCCCCCCccC
Q 001281 671 DIEGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
+++.|. +...|.-+..|.+|..|.
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhc
Confidence 999998 777888887777777775
No 156
>CHL00181 cbbX CbbX; Provisional
Probab=97.35 E-value=0.0064 Score=65.41 Aligned_cols=134 Identities=13% Similarity=0.070 Sum_probs=71.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
..+.++|++|+||||+|+.++......+ .-...-|+.++. .. +.....+.. .......+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g-~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG-YIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC-CCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc---c
Confidence 4578999999999999999976432111 111112444441 12 222221111 01111222222 2
Q ss_pred eEEEEEeCCCCC---------ChhhHHHHHhhhccCCCCcEEEEecCchhhhhhc--------cccceeeCCCCChhhHH
Q 001281 291 KFLLVLDDVWNE---------NYSLWEDLKAPFLAAAPNSKIIVTTRHSHVASTM--------GSVEHYNLSLLSDDDCW 353 (1108)
Q Consensus 291 r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~ 353 (1108)
.-+|++|++..- ..+..+.+...+.....+.+||+++....+.... .-...+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999531 1223344445454444566777777543332111 11246889999999988
Q ss_pred HHHHhhhc
Q 001281 354 FVFMNHAF 361 (1108)
Q Consensus 354 ~lf~~~~~ 361 (1108)
+++...+.
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 88877664
No 157
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.35 E-value=0.00016 Score=86.61 Aligned_cols=109 Identities=26% Similarity=0.270 Sum_probs=83.6
Q ss_pred ccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccc--hh
Q 001281 559 LYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLP--ES 636 (1108)
Q Consensus 559 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp--~~ 636 (1108)
...+|.|++|.+.+... ...-+...+.++++|+.||+|+++++.+ ..+++|++|+.|.+.+-.+..-. ..
T Consensus 144 g~~LPsL~sL~i~~~~~-------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQF-------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred hhhCcccceEEecCcee-------cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 34689999998866443 1222456688999999999999999988 78999999999999987776432 46
Q ss_pred hhcCccCcEeeecCCcCCcccch-------hccCCCCccEEeecCCC
Q 001281 637 TSSLMHLRVLILRDCSRLTRLPS-------KMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 637 i~~L~~L~~L~l~~~~~~~~lp~-------~i~~L~~L~~L~l~~~~ 676 (1108)
+.+|++|++||+|.... ...+. .-..|++||+||.+++.
T Consensus 216 LF~L~~L~vLDIS~~~~-~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKN-NDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhcccCCCeeecccccc-ccchHHHHHHHHhcccCccccEEecCCcc
Confidence 78999999999998543 22221 22458999999999875
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00083 Score=81.49 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=86.3
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
..++||++++.++++.|..... .-+.++|++|+|||++|+.++....... ...++.+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-----~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~--- 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-----NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS--- 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-----CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH---
Confidence 3689999999999999876432 2346899999999999999886431111 0123444421 1111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCC--------CChhhHHHHHhhhccCCCCcEEEEecCchh
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKAL-DGKKFLLVLDDVWN--------ENYSLWEDLKAPFLAAAPNSKIIVTTRHSH 331 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~--------~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 331 (1108)
++ .+.. -..+.++....+.+.+ +.++.+|++|++.. ....+...+..++... ..-+||-+|....
T Consensus 253 -ll---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E 326 (758)
T PRK11034 253 -LL---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQE 326 (758)
T ss_pred -Hh---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHH
Confidence 11 0100 0112222222222222 34678999999942 1112222333333322 2345555555433
Q ss_pred hhhhc-------cccceeeCCCCChhhHHHHHHhhh
Q 001281 332 VASTM-------GSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 332 v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
..... .-...+.++.++.+++..++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 22111 122578999999999999987654
No 159
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.33 E-value=0.0019 Score=69.02 Aligned_cols=158 Identities=14% Similarity=0.074 Sum_probs=79.0
Q ss_pred ceeccchhHHHHHHHHhC----------CCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 185 AVYGRDDDKAKILDMVLS----------DDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~----------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
.++|.+..++++.+.... +-.......-+.++|++|+||||+|+.+++.....+ .-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecHH--
Confidence 478888777666543211 111123356678999999999999999976431101 0011122333211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC--------hhhHHHHHhhhccCCCCcEEEEe
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN--------YSLWEDLKAPFLAAAPNSKIIVT 326 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivT 326 (1108)
++... .++. ........+.+. ...+|++|++..-. .+..+.+...+........+|++
T Consensus 84 --~l~~~---~~g~------~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 --DLVGE---YIGH------TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred --Hhhhh---hccc------hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11110 0110 011111222221 23489999995411 12334454444444344455565
Q ss_pred cCchhh----------hhhccccceeeCCCCChhhHHHHHHhhhc
Q 001281 327 TRHSHV----------ASTMGSVEHYNLSLLSDDDCWFVFMNHAF 361 (1108)
Q Consensus 327 tR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 361 (1108)
+..... ...+ ...+.+++++.++-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHH
Confidence 543222 1111 13578888998888888876663
No 160
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.33 E-value=0.0084 Score=70.97 Aligned_cols=192 Identities=12% Similarity=0.119 Sum_probs=107.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|.+..+..+...+..... .+.+.++|+.|+||||+|+.+....-... ..+ ..+++.-..-+.+
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~----~hayLf~Gp~GtGKTt~Ak~lAkal~c~~-~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKI----SHAYLFSGPRGTGKTSAAKIFAKAVNCLN-PPD-------GEPCNECEICKAI 82 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCccHHHHHH
Confidence 35799999999999999876542 46777899999999999988876432111 000 0001100111111
Q ss_pred HHHhc-------CCC-CCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecC-chhh
Q 001281 263 LESIT-------CKP-CDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTR-HSHV 332 (1108)
Q Consensus 263 ~~~l~-------~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v 332 (1108)
..... ... .......++...+... ..+++-++|+|++..-....+..+...+......+.+|++|. ...+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 11000 000 0111122222222111 245677889999976666677777777665445555555553 3333
Q ss_pred hhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 333 ASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
...+ .-...+.+.+++.++....+...+...+-. +..+....|++.++|.+..+
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~-----i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIE-----YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 3222 122568889999998888887766432211 11256778888988876543
No 161
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.33 E-value=0.0016 Score=70.12 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCce
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKK 291 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (1108)
-+.++|++|+|||++|+.++......+ .....-|+.++. .+ ++..+.+.. .......+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g-~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG-YVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC-CcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cC
Confidence 478999999999999977765432111 111112444442 12 222221111 11112222222 33
Q ss_pred EEEEEeCCCCC---------ChhhHHHHHhhhccCCCCcEEEEecCchhhhhhcc--------ccceeeCCCCChhhHHH
Q 001281 292 FLLVLDDVWNE---------NYSLWEDLKAPFLAAAPNSKIIVTTRHSHVASTMG--------SVEHYNLSLLSDDDCWF 354 (1108)
Q Consensus 292 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 354 (1108)
-+|++|++..- ..+.++.+...+.....+.+||+++.......... -...+.+++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68999998521 12334455555555555667777765432221111 12468899999999888
Q ss_pred HHHhhhc
Q 001281 355 VFMNHAF 361 (1108)
Q Consensus 355 lf~~~~~ 361 (1108)
++...+.
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 8877653
No 162
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.32 E-value=0.0048 Score=69.39 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=95.6
Q ss_pred CCceeccchhHHHHHHHHhCC--------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLSD--------DPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.++.|.+..++++.+.+..+ ..+-...+-+.++|++|.|||++|+++++.... .| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---~f-----i~i~~--- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---TF-----IRVVG--- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE-----EEEeh---
Confidence 456889998888887765311 011123577889999999999999999986432 22 11111
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-----------Chh---hHHHHHhhhcc--CC
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE-----------NYS---LWEDLKAPFLA--AA 318 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~ 318 (1108)
..+... .++. ....+...+.......+.+|++|++..- +.. .+..+...+.. ..
T Consensus 213 -s~l~~k---~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEFVQK---YLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHHHHH---hcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111111 1110 0111222222333567899999997321 001 11122222221 23
Q ss_pred CCcEEEEecCchhhhhh--c---cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 319 PNSKIIVTTRHSHVAST--M---GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 319 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
.+..||+||...+.... . .-...+.++..+.++..++|........-..+ ....++++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d------vd~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE------VDLEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc------cCHHHHHHHcCCCC
Confidence 46678888875443322 1 12356888888888888888766533221111 12346666666653
No 163
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.31 E-value=0.0038 Score=72.58 Aligned_cols=160 Identities=12% Similarity=0.100 Sum_probs=92.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
..-+.|+|+.|+|||+||+++++...... .-..+++++.. ++...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh-
Confidence 45689999999999999999998753211 11234455432 3334444444321 112 2233333
Q ss_pred ceEEEEEeCCCCCChh--hHHHHHhhhcc-CCCCcEEEEecCchh---------hhhhccccceeeCCCCChhhHHHHHH
Q 001281 290 KKFLLVLDDVWNENYS--LWEDLKAPFLA-AAPNSKIIVTTRHSH---------VASTMGSVEHYNLSLLSDDDCWFVFM 357 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 357 (1108)
+.-+||+||+..-... ..+.+...+.. ...|..||+|+.... +...+.....+.+++.+.++-.+++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 3448999999542211 12233333222 123456888876421 22233334578999999999999999
Q ss_pred hhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 358 NHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
..+..... .+.+++...|++.+.|..-.+
T Consensus 291 ~~~~~~~~-----~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 291 KKAEEEGI-----DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHcCC-----CCCHHHHHHHHcCcCCCHHHH
Confidence 88754221 122377888999988876544
No 164
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.29 E-value=0.0042 Score=63.07 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=72.2
Q ss_pred cccCCceeccchhHHHHHHHH---hCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHH
Q 001281 180 VRTERAVYGRDDDKAKILDMV---LSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVL 256 (1108)
Q Consensus 180 ~~~~~~~vGr~~~~~~l~~~L---~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 256 (1108)
++....++|.+.+++.|++-- ..+. ...-+-++|..|.|||++++++.+....++ .--|.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~----pannvLL~G~rGtGKSSlVkall~~y~~~G-----LRlIev~------ 87 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL----PANNVLLWGARGTGKSSLVKALLNEYADQG-----LRLIEVS------ 87 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC----CCcceEEecCCCCCHHHHHHHHHHHHhhcC-----ceEEEEC------
Confidence 344568999999999887543 2222 234567899999999999999998654322 1112222
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC-hhhHHHHHhhhccC----CCCcEEEEecCchh
Q 001281 257 SISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN-YSLWEDLKAPFLAA----APNSKIIVTTRHSH 331 (1108)
Q Consensus 257 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~----~~gs~iivTtR~~~ 331 (1108)
..+..++.++...++. ...||+|.+||+.-+. ......+...+..+ .....|..||-.++
T Consensus 88 -------------k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 88 -------------KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred -------------HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 1223334444444442 3579999999984432 24455566555432 22334445554444
Q ss_pred h
Q 001281 332 V 332 (1108)
Q Consensus 332 v 332 (1108)
.
T Consensus 153 L 153 (249)
T PF05673_consen 153 L 153 (249)
T ss_pred c
Confidence 3
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.004 Score=71.26 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=87.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
..-+.|+|+.|+|||+||+++++..... ...+++++ ...+...+...+... .. ..+++.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-
Confidence 3567899999999999999999865321 12234444 233444555544321 11 22333333
Q ss_pred ceEEEEEeCCCCCChh--hHHHHHhhhcc-CCCCcEEEEecCc-h--------hhhhhccccceeeCCCCChhhHHHHHH
Q 001281 290 KKFLLVLDDVWNENYS--LWEDLKAPFLA-AAPNSKIIVTTRH-S--------HVASTMGSVEHYNLSLLSDDDCWFVFM 357 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~iivTtR~-~--------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 357 (1108)
..-+|++||+...... ..+.+...+.. ...|..||+||.. + .+...+.....+.+.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 3458888998543211 12233333321 1235678888854 2 122233334578899999999999998
Q ss_pred hhhcCCCCccchhhhhhHHHHHHHHhcCCc
Q 001281 358 NHAFYTRDHIHVQRISGLFHKKVVQKCRGL 387 (1108)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 387 (1108)
+++....- . +.+++..-|++.+.|.
T Consensus 282 ~k~~~~~~--~---l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSI--R---IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCC--C---CCHHHHHHHHHhcCCC
Confidence 87754321 1 2225666677776654
No 166
>PRK10536 hypothetical protein; Provisional
Probab=97.25 E-value=0.0054 Score=63.11 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=75.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEe----CCC-----C
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCV----SDE-----F 253 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----~~~-----~ 253 (1108)
...+.+|......+..++.+. .+|.++|+.|.|||+||.++..+.-..+ .|+.++-+.- ++. -
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~-------~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK-------QLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC-------CeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCC
Confidence 345778888889888888542 4899999999999999998877432122 3443332211 100 0
Q ss_pred CHH----HHHHHHHHHhcCCCCCcccHHHHHH--------HHHHHhCCceE---EEEEeCCCCCChhhHHHHHhhhccCC
Q 001281 254 DVL----SISMALLESITCKPCDLKALNEVQV--------QLQKALDGKKF---LLVLDDVWNENYSLWEDLKAPFLAAA 318 (1108)
Q Consensus 254 ~~~----~~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~ 318 (1108)
+.. ..+..+.+.+..-. +....+.... .-..+++++.+ +||+|++.+-+..+... .+...+
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~---~ltR~g 201 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKM---FLTRLG 201 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHH---HHhhcC
Confidence 111 11222222221100 0001111100 00125566654 99999997765544433 344557
Q ss_pred CCcEEEEecCchh
Q 001281 319 PNSKIIVTTRHSH 331 (1108)
Q Consensus 319 ~gs~iivTtR~~~ 331 (1108)
.+|++|+|--..+
T Consensus 202 ~~sk~v~~GD~~Q 214 (262)
T PRK10536 202 ENVTVIVNGDITQ 214 (262)
T ss_pred CCCEEEEeCChhh
Confidence 8999999876543
No 167
>PRK08116 hypothetical protein; Validated
Probab=97.23 E-value=0.0014 Score=69.86 Aligned_cols=103 Identities=21% Similarity=0.176 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
..+.++|..|+|||.||.++++..... ...+++++ ..+++..+........ ..... .+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCC
Confidence 458899999999999999999975322 22345554 3344545544432211 11112 233334433
Q ss_pred eEEEEEeCCCCCChhhHHH--HHhhhcc-CCCCcEEEEecCc
Q 001281 291 KFLLVLDDVWNENYSLWED--LKAPFLA-AAPNSKIIVTTRH 329 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 329 (1108)
. ||||||+..+....|.. +...+.. ...|..+||||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4 89999996544445543 3333332 2356679999974
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.22 E-value=0.0024 Score=61.30 Aligned_cols=88 Identities=22% Similarity=0.101 Sum_probs=46.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
..+.|+|++|+||||+|+.++...... ...++++..+........... ............... ....+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGEL-RLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHH-HHHHHHHHHHhc
Confidence 578999999999999999999875432 113555554433322211111 011111111111122 222333333333
Q ss_pred -eEEEEEeCCCCCC
Q 001281 291 -KFLLVLDDVWNEN 303 (1108)
Q Consensus 291 -r~LlVlDdv~~~~ 303 (1108)
..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4999999996653
No 169
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.22 E-value=0.0021 Score=72.74 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=87.1
Q ss_pred CceeccchhHHHHHHHHhCCC--------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 184 RAVYGRDDDKAKILDMVLSDD--------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
.++.|.+..++++.+.+.-.- .+-...+-|.++|++|+|||++|+.+++.... .| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~---~f-----i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA---TF-----LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---CE-----EEEecc---
Confidence 467899999998887763210 01123456889999999999999999986432 33 222111
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-----------ChhhHH---HHHhhhcc--CCC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE-----------NYSLWE---DLKAPFLA--AAP 319 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~---~l~~~l~~--~~~ 319 (1108)
.+. ....+ .....+...+.....+.+.+|+||++..- +.+... .+...+.. ...
T Consensus 252 -eL~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 -ELI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -hhh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 111 11100 00111122222233457889999987311 001111 12222211 234
Q ss_pred CcEEEEecCchhhhhhc-----cccceeeCCCCChhhHHHHHHhhhcC
Q 001281 320 NSKIIVTTRHSHVASTM-----GSVEHYNLSLLSDDDCWFVFMNHAFY 362 (1108)
Q Consensus 320 gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~ 362 (1108)
+.+||+||......... .-...+.+...+.++..++|..+...
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 67888888754433221 12357889999999999999877643
No 170
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0054 Score=72.93 Aligned_cols=136 Identities=18% Similarity=0.264 Sum_probs=85.0
Q ss_pred CCceeccchhHHHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSI 258 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 258 (1108)
...++|.++.+..+.+.+..... +.....+....|+.|||||-||+++....--.. +..+-++.| +.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e---~aliR~DMS------Ey 560 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE---QALIRIDMS------EY 560 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC---ccceeechH------HH
Confidence 35689999999999988865432 234567888899999999999999887521100 223333333 32
Q ss_pred HHH-HHHHhcCCCCCcccHHHHHHHHHHHhCCceE-EEEEeCCCCCChhhHHHHHhhhccC----CC-------CcEEEE
Q 001281 259 SMA-LLESITCKPCDLKALNEVQVQLQKALDGKKF-LLVLDDVWNENYSLWEDLKAPFLAA----AP-------NSKIIV 325 (1108)
Q Consensus 259 ~~~-i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~----~~-------gs~iiv 325 (1108)
... -+..+-+.+++.-..++ .-.|.+..+.++| +|.||++...+++....+...+..+ +. .+-||+
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 221 12233333343333333 3456666777877 8889999777777777777777653 22 355666
Q ss_pred ecC
Q 001281 326 TTR 328 (1108)
Q Consensus 326 TtR 328 (1108)
||-
T Consensus 640 TSN 642 (786)
T COG0542 640 TSN 642 (786)
T ss_pred ecc
Confidence 765
No 171
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.20 E-value=0.0042 Score=76.17 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=40.0
Q ss_pred CCceeccchhHHHHHHHHhCCC-CCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 183 ERAVYGRDDDKAKILDMVLSDD-PSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+.+.+|.++-+++|.++|.... .+.....++.++|++|+||||+|+.++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999998886321 111234689999999999999999999753
No 172
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.018 Score=62.64 Aligned_cols=176 Identities=10% Similarity=0.046 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc---cc--ce--eEEEEeCCCCCHHHHHHHHHHH
Q 001281 193 KAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI---KF--DI--KAWVCVSDEFDVLSISMALLES 265 (1108)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---~f--~~--~~wv~~~~~~~~~~~~~~i~~~ 265 (1108)
.+.+...+..+.- .+..-++|+.|+||+++|..+....--... .. .| .-++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~rl----~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------- 79 (325)
T PRK06871 11 YQQITQAFQQGLG----HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------- 79 (325)
T ss_pred HHHHHHHHHcCCc----ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-------
Confidence 3455566544332 467889999999999999887764311100 00 00 000111111111100
Q ss_pred hcCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhcc-c
Q 001281 266 ITCKPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTMG-S 338 (1108)
Q Consensus 266 l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~-~ 338 (1108)
.......-.+++.. .+.+.+ .+++=++|+|++..-+......+...+.....++.+|++|.+. .+..... -
T Consensus 80 -~p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 80 -EPIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred -ccccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 00000011223322 222322 3566788899997777777888888887777778888777654 3333322 2
Q ss_pred cceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 339 VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 339 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
...+.+.++++++..+.+....... . ..+...++.++|.|+.+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~~------~----~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSAE------I----SEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhccC------h----HHHHHHHHHcCCCHHHH
Confidence 3678999999999988887654211 1 23556788999999644
No 173
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.18 E-value=0.0058 Score=71.22 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=91.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
..+.|+|..|+|||.|++++++...... .-..+++++. .++...+...+... ..+ .+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc-
Confidence 3589999999999999999998643211 1123445543 33444444443211 111 23333332
Q ss_pred eEEEEEeCCCCCCh-hhHH-HHHhhhcc-CCCCcEEEEecCch---------hhhhhccccceeeCCCCChhhHHHHHHh
Q 001281 291 KFLLVLDDVWNENY-SLWE-DLKAPFLA-AAPNSKIIVTTRHS---------HVASTMGSVEHYNLSLLSDDDCWFVFMN 358 (1108)
Q Consensus 291 r~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 358 (1108)
-=+|||||+..... +.|. .+...+.. ...|..|||||+.. .+...+...-.+.+...+.+.-..++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 35788999954322 2232 33333332 23456788888752 2333344456789999999999999988
Q ss_pred hhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 359 HAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
++....- .+.+++..-|++.+.+..-.+
T Consensus 458 ka~~r~l-----~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 458 KAVQEQL-----NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHhcCC-----CCCHHHHHHHHHhccCCHHHH
Confidence 8754321 122367777877777654333
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.019 Score=62.38 Aligned_cols=96 Identities=11% Similarity=0.170 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhhhhhcc-ccceeeCCCCChhhHHHHHHhhhcCCCCc
Q 001281 289 GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHVASTMG-SVEHYNLSLLSDDDCWFVFMNHAFYTRDH 366 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 366 (1108)
+++-++|+|++..-+...-..+...+.....++.+|++|.. ..+...+. -...+.+.+++.+++.+.+.... .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---VS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---CC-
Confidence 46678999999666666667777777766677777777765 33333222 22568899999999888886531 11
Q ss_pred cchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 367 IHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 367 ~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
+ ..+..++..++|.|+....+.
T Consensus 188 ---~----~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ---E----RAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ---h----HHHHHHHHHcCCCHHHHHHHh
Confidence 1 346678999999998765443
No 175
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.018 Score=66.28 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=50.6
Q ss_pred CCceeccchhHHHHHHHHhCCCC-CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDP-SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSI 258 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 258 (1108)
+.+-+|.++-+++|++++.-..- ++.+-++++.+|++|||||++|+.++..... . +| -++++.-.|..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-k-Ff----RfSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR-K-FF----RFSVGGMTDVAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-c-eE----EEeccccccHHhh
Confidence 45678999999999999864321 2345689999999999999999999986432 1 22 2456666565544
No 176
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.019 Score=62.16 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=99.9
Q ss_pred hHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc--cc----ceeEEEEeCCCCCHHHHHHHHHHH
Q 001281 192 DKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI--KF----DIKAWVCVSDEFDVLSISMALLES 265 (1108)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~f----~~~~wv~~~~~~~~~~~~~~i~~~ 265 (1108)
..+++...+..+. -.+.+-++|+.|+||+++|..+....--.+. .. ...-++..+..+|+..+
T Consensus 11 ~~~~l~~~~~~~r----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------- 79 (319)
T PRK06090 11 VWQNWKAGLDAGR----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------- 79 (319)
T ss_pred HHHHHHHHHHcCC----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-------
Confidence 3455555554433 2578899999999999999877653211100 00 00000001111111000
Q ss_pred hcCCC-CCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhcc-
Q 001281 266 ITCKP-CDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTMG- 337 (1108)
Q Consensus 266 l~~~~-~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~- 337 (1108)
.... ...-.+++.. .+.+.+ .+++=++|+|++..-+......+...+.....++.+|++|.+. .+.....
T Consensus 80 -~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 80 -KPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred -ecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000 0011223332 233332 3455688999997767777888888887767777777776653 3433322
Q ss_pred ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 338 SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 338 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
-...+.+.+++++++.+.+..... +.+..+++.++|.|+....+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~-------------~~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQGI-------------TVPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcCC-------------chHHHHHHHcCCCHHHHHHH
Confidence 225789999999999888865421 12346789999999877554
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.12 E-value=0.0037 Score=78.35 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=83.1
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
..++||+.++.+++..|.... ..-+.++|++|+|||++|+.+..+..... ...+..+|.- ++..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~-----~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l-- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL-- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC-----CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH--
Confidence 459999999999999986543 23456899999999999998887532110 0112233321 11111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHh--CCceEEEEEeCCCCCC-------hhhHHHHHhhhccCCCCcEEEEecCchh
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKAL--DGKKFLLVLDDVWNEN-------YSLWEDLKAPFLAAAPNSKIIVTTRHSH 331 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTtR~~~ 331 (1108)
+. .... ..+.+.....+.+.+ .+++.+|++|++..-. ..+...+..+.... ..-++|-+|....
T Consensus 241 --~a---~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e 313 (852)
T TIGR03346 241 --IA---GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDE 313 (852)
T ss_pred --hh---cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHH
Confidence 10 0000 011222222222222 2468999999985311 01111222222211 2245555555443
Q ss_pred hhhhc-------cccceeeCCCCChhhHHHHHHhhh
Q 001281 332 VASTM-------GSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 332 v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
....+ .-...+.++..+.++...++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 32111 122567888889999988887653
No 178
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.00024 Score=69.71 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccccccceeEE
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAW 246 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 246 (1108)
-|.|+|++|+||||||+.+++.....-.+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999987655446777776
No 179
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.013 Score=61.95 Aligned_cols=188 Identities=16% Similarity=0.133 Sum_probs=105.1
Q ss_pred CCceeccchhHHHHHHHHhCCC--------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLSDD--------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.++-|-++.+++|.+..--+- -+-..++=|-++|++|.|||-||++|+++... .| +.+...
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---tF-----IrvvgS-- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA---TF-----IRVVGS-- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc---eE-----EEeccH--
Confidence 3467888999998888753221 12245678899999999999999999997433 33 333221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC-CceEEEEEeCCCCC-----------Chhh---HHHHHhhhccC--
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALD-GKKFLLVLDDVWNE-----------NYSL---WEDLKAPFLAA-- 317 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~-----------~~~~---~~~l~~~l~~~-- 317 (1108)
++.+..-+. -..+.+.+.+.-+ ..++.|.+|.+..- +.+. .-++...+..+
T Consensus 220 ------ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ------ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ------HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 222222111 1233444444444 45899999988321 1111 22233333322
Q ss_pred CCCcEEEEecCchhhhhhc-----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch----
Q 001281 318 APNSKIIVTTRHSHVASTM-----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP---- 388 (1108)
Q Consensus 318 ~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP---- 388 (1108)
....|||..|...++.... .-++.++++.-+.+.-.+.|+-++....-..+. ..+.+++.|.|.-
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv------d~e~la~~~~g~sGAdl 361 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV------DLELLARLTEGFSGADL 361 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc------CHHHHHHhcCCCchHHH
Confidence 3467999988765554332 233568888555555566777666443322211 1346777777654
Q ss_pred HHHHHHHhhh
Q 001281 389 LAAKTLGGLL 398 (1108)
Q Consensus 389 Lai~~~~~~l 398 (1108)
-|+.+=|+++
T Consensus 362 kaictEAGm~ 371 (406)
T COG1222 362 KAICTEAGMF 371 (406)
T ss_pred HHHHHHHhHH
Confidence 3344444444
No 180
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.10 E-value=0.0075 Score=69.40 Aligned_cols=168 Identities=14% Similarity=0.088 Sum_probs=89.7
Q ss_pred CceeccchhHHHHHHHHhCCC--------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc--ccceeEEEEeCCCC
Q 001281 184 RAVYGRDDDKAKILDMVLSDD--------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI--KFDIKAWVCVSDEF 253 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~f~~~~wv~~~~~~ 253 (1108)
.++.|.+..++++.+.+..+- .+-...+-+.++|++|.|||++|+++++....... ......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 467889999998888753210 01123456889999999999999999987532210 1122344444321
Q ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCC-------hhh-----HHHHHhhhccC--C
Q 001281 254 DVLSISMALLESITCKPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNEN-------YSL-----WEDLKAPFLAA--A 318 (1108)
Q Consensus 254 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~--~ 318 (1108)
++ +...... .......+....++. -.+++++|+||+++.-- ... ...+...+... .
T Consensus 261 ---eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 1100000 001111222222222 23578999999994310 011 12232222221 2
Q ss_pred CCcEEEEecCchhhhhh-c----cccceeeCCCCChhhHHHHHHhhhc
Q 001281 319 PNSKIIVTTRHSHVAST-M----GSVEHYNLSLLSDDDCWFVFMNHAF 361 (1108)
Q Consensus 319 ~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 361 (1108)
.+..||.||........ + .-...+.++..+.++..++|..+..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 34556666654433221 1 1234689999999999999988764
No 181
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00024 Score=85.25 Aligned_cols=76 Identities=30% Similarity=0.480 Sum_probs=41.7
Q ss_pred CCCcEEEeeCcccc--ccchhh-hcCccCcEeeecCCcCC-cccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCc
Q 001281 618 KLLRYLNVAGTQIR--SLPEST-SSLMHLRVLILRDCSRL-TRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQT 693 (1108)
Q Consensus 618 ~~L~~L~Ls~~~i~--~lp~~i-~~L~~L~~L~l~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 693 (1108)
.+|++|++++...- .-|..+ ..||+|+.|.+++=... .++-.-..++++|+.||+++++ +..+ .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 45666666553221 112233 34667777777652111 1122223467777777777776 5555 56777777777
Q ss_pred cC
Q 001281 694 LS 695 (1108)
Q Consensus 694 L~ 695 (1108)
|.
T Consensus 200 L~ 201 (699)
T KOG3665|consen 200 LS 201 (699)
T ss_pred Hh
Confidence 75
No 182
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.01 E-value=0.00011 Score=73.38 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=62.5
Q ss_pred CCCcccEEEecCcccc-----ccCcchhcCCCCcEEEeeCcccc----ccc-------hhhhcCccCcEeeecCCcCCcc
Q 001281 593 KFKKLRVLSLEGYYVT-----QLPNSIKELKLLRYLNVAGTQIR----SLP-------ESTSSLMHLRVLILRDCSRLTR 656 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~Ls~~~i~----~lp-------~~i~~L~~L~~L~l~~~~~~~~ 656 (1108)
.+..+..++||||.|. .+...|.+-.+|+..+++.-... ++| +.+-++++|+..+|++|-.-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4778899999999975 34556777789999988863211 333 3456889999999999876555
Q ss_pred cchh----ccCCCCccEEeecCCC
Q 001281 657 LPSK----MWNLINLRHLDIEGAN 676 (1108)
Q Consensus 657 lp~~----i~~L~~L~~L~l~~~~ 676 (1108)
.|.. |++-+.|.||.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 5543 5677899999998886
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.01 E-value=0.0024 Score=79.63 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=38.3
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~-----~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT-----KNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC-----cCceEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999996653 2346699999999999999888754
No 184
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.00 E-value=0.012 Score=69.33 Aligned_cols=178 Identities=17% Similarity=0.185 Sum_probs=93.0
Q ss_pred CCceeccchhHHHHHHHHh---CCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMVL---SDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~---~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.++.++++.+.+. ... .+....+-+.++|++|+|||++|+.++..... . ++.++.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~-----~~~i~~---- 121 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---P-----FFSISG---- 121 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---C-----eeeccH----
Confidence 4578898877766654432 211 01222456889999999999999999876432 2 222221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------hhhHHHHH----hhhc--cCCC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN----------YSLWEDLK----APFL--AAAP 319 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~----~~l~--~~~~ 319 (1108)
.++. ..... .....+...+.......+++|++||+..-. ...+.... ..+. ....
T Consensus 122 ~~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111 11100 011222233334445668999999983310 11122222 1121 1223
Q ss_pred CcEEEEecCchhhhh-hc----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc
Q 001281 320 NSKIIVTTRHSHVAS-TM----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL 387 (1108)
Q Consensus 320 gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 387 (1108)
+..||.||....... .+ .-...+.++..+.++-.++|...........+ .....+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~------~~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD------VDLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc------hhHHHHHHhCCCC
Confidence 456666776543221 11 12356888888888888888776643221111 2345778887774
No 185
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0071 Score=69.80 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=89.0
Q ss_pred CCceeccchhHHHHHHHHhCCCC-CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDP-SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 261 (1108)
+.+-+|.++-+++|+++|.-..- ..-+-+++++||++|||||+|++.+++.... .|- -++++...|..++-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R---kfv---R~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR---KFV---RISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC---CEE---EEecCccccHHHhccc
Confidence 45678999999999999863221 1233479999999999999999999986432 332 2345555444433100
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh----hhHHHHHhhhccCCC-------------CcEEE
Q 001281 262 LLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENY----SLWEDLKAPFLAAAP-------------NSKII 324 (1108)
Q Consensus 262 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~-------------gs~ii 324 (1108)
=-..+ +.. ...+...+.+ .+.+.=+++||.+..-.. +.-..+...|.+..+ =|+|+
T Consensus 396 RRTYI-----Gam-PGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 RRTYI-----GAM-PGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccc-----ccC-ChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 00000 000 1122222222 234566888998833211 112233333332111 14554
Q ss_pred -EecCc-hh-hhh-hccccceeeCCCCChhhHHHHHHhhh
Q 001281 325 -VTTRH-SH-VAS-TMGSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 325 -vTtR~-~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
|||-+ -+ +.. .+.-...+++.+.+++|=.+.-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 34433 11 221 22334679999999998766666554
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.024 Score=62.66 Aligned_cols=163 Identities=8% Similarity=0.024 Sum_probs=89.2
Q ss_pred ceec-cchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 185 AVYG-RDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 185 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
.++| -+.-++.+...+..+.- .+...++|+.|+||||+|+.+.+..--.. ..... .+.... .-+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l----~ha~Lf~G~~G~gk~~~a~~la~~l~c~~-~~~~~---~cg~C~----~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRL----SHAYLFEGAKGTGKKATALWLAKSLFCLE-RNGVE---PCGTCT----NCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCC----CceEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCC---CCCcCH----HHHHHh
Confidence 3556 66667777777754432 56779999999999999988765421110 00000 000000 000000
Q ss_pred HHhcC------CCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-h
Q 001281 264 ESITC------KPCDLKALNEVQVQLQKA----LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-V 332 (1108)
Q Consensus 264 ~~l~~------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v 332 (1108)
..-.. .......+++....+... ..+.+=++|+|++..-+......+...+.....++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000011122222222111 234556799999966666677778888877677787887776532 3
Q ss_pred hhhc-cccceeeCCCCChhhHHHHHHhh
Q 001281 333 ASTM-GSVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 333 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
.... .-...+++.++++++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3222 22367899999999988877653
No 187
>PRK07261 topology modulation protein; Provisional
Probab=96.95 E-value=0.0018 Score=63.89 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=41.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCce
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKK 291 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (1108)
.|.|+|++|+||||||+.+.........+.|...|-.- ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 47899999999999999998765433224555555211 111223445555666666666
Q ss_pred EEEEEeCCC
Q 001281 292 FLLVLDDVW 300 (1108)
Q Consensus 292 ~LlVlDdv~ 300 (1108)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6778874
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.94 E-value=0.018 Score=61.52 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=33.6
Q ss_pred hHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHH
Q 001281 192 DKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSI 258 (1108)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 258 (1108)
-++++..++..+ .-|.+.|++|+|||++|+.+..... ...+.+++....+..++
T Consensus 10 l~~~~l~~l~~g-------~~vLL~G~~GtGKT~lA~~la~~lg------~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 10 VTSRALRYLKSG-------YPVHLRGPAGTGKTTLAMHVARKRD------RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHhcC-------CeEEEEcCCCCCHHHHHHHHHHHhC------CCEEEEeCCccCCHHHH
Confidence 345555555432 3456899999999999999986321 12345555555444444
No 189
>CHL00176 ftsH cell division protein; Validated
Probab=96.93 E-value=0.012 Score=70.28 Aligned_cols=177 Identities=15% Similarity=0.214 Sum_probs=95.6
Q ss_pred CCceeccchhHHHHHHH---HhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDM---VLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~---L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.++.++++.+. +..... +....+-|.++|++|+|||++|+.++..... . |+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~---p-----~i~is~s--- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV---P-----FFSISGS--- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C-----eeeccHH---
Confidence 35688887666655444 333221 1223456899999999999999999875422 1 2222211
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------hhhHHH----HHhhhcc--CCC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN----------YSLWED----LKAPFLA--AAP 319 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~ 319 (1108)
++.. .. .+ .....+...+.+.....+++|++||+..-. ...++. +...+.. ...
T Consensus 251 -~f~~-~~--~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 251 -EFVE-MF--VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred -HHHH-Hh--hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 1110 00 00 011223333444556788999999994210 112222 2222211 234
Q ss_pred CcEEEEecCchhhhhh-c----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCC
Q 001281 320 NSKIIVTTRHSHVAST-M----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRG 386 (1108)
Q Consensus 320 gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 386 (1108)
+..||.||........ + .-...+.++..+.++-.++++.++....... . .....+++.+.|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d----~~l~~lA~~t~G 386 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--D----VSLELIARRTPG 386 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--h----HHHHHHHhcCCC
Confidence 5667777765433221 1 1225678888888888888887764422111 1 345677777777
No 190
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.014 Score=64.47 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=90.7
Q ss_pred CCceeccchhHHH-HHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccc-eeEEEEeCCCCCHHHHHH
Q 001281 183 ERAVYGRDDDKAK-ILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFD-IKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 183 ~~~~vGr~~~~~~-l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~ 260 (1108)
+.-++|-...... +...+.... +.....+.|+|..|.|||.|++++.+..... ..+ .+++++ ......
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~--g~~~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~------se~f~~ 156 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENP--GGAYNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLT------SEDFTN 156 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhcc--CCcCCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEecc------HHHHHH
Confidence 3445666544443 333332221 2246789999999999999999999875432 122 223322 233344
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh-hhH-HHHHhhhcc-CCCCcEEEEecCc--------
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENY-SLW-EDLKAPFLA-AAPNSKIIVTTRH-------- 329 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR~-------- 329 (1108)
.++..+.. .-...+++.. .-=++++||++.-.. +.| +.+...+.. ...|-.||+|++.
T Consensus 157 ~~v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 157 DFVKALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 44443321 1223444444 344888999954211 122 234444433 2334489999964
Q ss_pred -hhhhhhccccceeeCCCCChhhHHHHHHhhhcC
Q 001281 330 -SHVASTMGSVEHYNLSLLSDDDCWFVFMNHAFY 362 (1108)
Q Consensus 330 -~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 362 (1108)
+.+...+...-.+.+.+.+.+.....+..++..
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 233444455568999999999999988887643
No 191
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.032 Score=61.37 Aligned_cols=178 Identities=12% Similarity=0.068 Sum_probs=100.4
Q ss_pred hHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc--ccce-----eEEEEeCCCCCHHHHHHHHHH
Q 001281 192 DKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI--KFDI-----KAWVCVSDEFDVLSISMALLE 264 (1108)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~f~~-----~~wv~~~~~~~~~~~~~~i~~ 264 (1108)
.-+++...+..+.. .+.+-+.|+.|+||+++|..+....--... .-.| .-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~rl----~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 10 DYEQLVGSYQAGRG----HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHHcCCc----ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 34566666654432 578889999999999999876653311000 0000 001111111111100
Q ss_pred HhcCCCC-CcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhc-
Q 001281 265 SITCKPC-DLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTM- 336 (1108)
Q Consensus 265 ~l~~~~~-~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~- 336 (1108)
..... ..-.+++.. .+.+.+ .+++=++|+|++..-+......+...+.....++.+|.+|.+. .+....
T Consensus 80 --~p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 --TPEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred --ecccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000 011223322 233322 3567789999997766677778888887767777777777653 343332
Q ss_pred cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHH
Q 001281 337 GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAK 392 (1108)
Q Consensus 337 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 392 (1108)
.-...+.+.+++++++.+.+..... .+ + +.+..+++.++|.|....
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~--~~----~----~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREVT--MS----Q----DALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHccC--CC----H----HHHHHHHHHcCCCHHHHH
Confidence 2225688999999998887765421 11 1 446788999999996543
No 192
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.88 E-value=0.0019 Score=66.15 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEe
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCV 249 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 249 (1108)
--++|+|..|.||||++..+...... .|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~---~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH---KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc---cCCEEEEEec
Confidence 35779999999999999999876433 6777776654
No 193
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.86 E-value=0.013 Score=57.14 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=72.5
Q ss_pred ccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc------------------cccceeEEEEe
Q 001281 188 GRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD------------------IKFDIKAWVCV 249 (1108)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 249 (1108)
|-++..+.+...+..+.- .+.+.++|+.|+||+++|..+.+..--.. .+.| ..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~l----~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL----PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEET
T ss_pred CcHHHHHHHHHHHHcCCc----ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEec
Confidence 455666777777765542 46789999999999999987776431111 0112 222221
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEE
Q 001281 250 SDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKII 324 (1108)
Q Consensus 250 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 324 (1108)
.... ..-..++.. .+.+.+ .+++=++|+||+..-+.+.+..+...+.....++.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 1110 011222222 333332 3457789999998777788889999888888899999
Q ss_pred EecCchh
Q 001281 325 VTTRHSH 331 (1108)
Q Consensus 325 vTtR~~~ 331 (1108)
++|++..
T Consensus 137 L~t~~~~ 143 (162)
T PF13177_consen 137 LITNNPS 143 (162)
T ss_dssp EEES-GG
T ss_pred EEECChH
Confidence 9988754
No 194
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.80 E-value=0.0059 Score=76.57 Aligned_cols=137 Identities=19% Similarity=0.202 Sum_probs=78.7
Q ss_pred CceeccchhHHHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.+..++.+.+.+..... +.....++.++|+.|+|||++|+.+....... ....+.++.+.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~---~~~~i~~d~s~~~~~~~-- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYMEKHS-- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhhcccch--
Confidence 4689999999999998875321 12234678899999999999999998753211 12233344443222111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhC-CceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEEec
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKALD-GKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIVTT 327 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 327 (1108)
...-++.+ ++....++ ...+.+.++ ....+|+||++...+...+..+...+..+. ..+-||+||
T Consensus 640 --~~~l~g~~-~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 640 --VARLIGAP-PGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred --HHHhcCCC-CCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 11112222 11111111 012222332 233589999998877888888877775431 234477777
Q ss_pred Cc
Q 001281 328 RH 329 (1108)
Q Consensus 328 R~ 329 (1108)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 64
No 195
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.80 E-value=6.6e-05 Score=85.08 Aligned_cols=86 Identities=26% Similarity=0.314 Sum_probs=46.9
Q ss_pred hhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCc
Q 001281 588 SDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINL 667 (1108)
Q Consensus 588 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 667 (1108)
+..+.=++.|+.|+|++|+++..- .+..|++|+.|||+.|.+..+|.--..=.+|+.|++++| .++.+-. +.+|.+|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~g-ie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLRG-IENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhhh-HHhhhhh
Confidence 334444556666666666665553 556666666666666666655542111122666666654 2444432 5566666
Q ss_pred cEEeecCCC
Q 001281 668 RHLDIEGAN 676 (1108)
Q Consensus 668 ~~L~l~~~~ 676 (1108)
++||++.|-
T Consensus 257 ~~LDlsyNl 265 (1096)
T KOG1859|consen 257 YGLDLSYNL 265 (1096)
T ss_pred hccchhHhh
Confidence 666666653
No 196
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.78 E-value=0.014 Score=65.94 Aligned_cols=151 Identities=16% Similarity=0.227 Sum_probs=83.3
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH-H
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL-L 263 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-~ 263 (1108)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+........ .|... -+..+ ...+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~-------hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~-~~~ft---tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE-------SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYL-MTRFS---TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC-------CEEEECCCChhHHHHHHHHHHHhcccC-cceee-eeeec---CcHHhcCcHHH
Confidence 58999999999999887653 578999999999999999987432211 23211 01111 111221111 0
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhCC---ceEEEEEeCCCCCChhhHHHHHhhhccC---------CCCcEEEEecCchh
Q 001281 264 ESITCKPCDLKALNEVQVQLQKALDG---KKFLLVLDDVWNENYSLWEDLKAPFLAA---------APNSKIIVTTRHSH 331 (1108)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~---------~~gs~iivTtR~~~ 331 (1108)
..... . ..+.+...+ .--++++|+++.........+...+... .-..++||++.++
T Consensus 89 ~~~~~----~-------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~- 156 (498)
T PRK13531 89 QALKD----E-------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE- 156 (498)
T ss_pred hhhhh----c-------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-
Confidence 11000 0 001111111 1228999999988777777776666321 1134566666543
Q ss_pred hhh-------hccc-cceeeCCCCChhhH-HHHHHhh
Q 001281 332 VAS-------TMGS-VEHYNLSLLSDDDC-WFVFMNH 359 (1108)
Q Consensus 332 v~~-------~~~~-~~~~~l~~L~~~~~-~~lf~~~ 359 (1108)
... ...- .-.+.++++++++. .+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 1110 13578899986444 7777653
No 197
>PRK08181 transposase; Validated
Probab=96.76 E-value=0.0036 Score=66.15 Aligned_cols=100 Identities=20% Similarity=0.075 Sum_probs=54.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
.-+.++|++|+|||.||..+.+.... ....+.|+++ .++...+..... ........ +.+ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l----~~l-~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRT------TDLVQKLQVARR-----ELQLESAI----AKL-DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHH----HHH-hc
Confidence 45899999999999999999875422 1223455543 344444433211 11122222 222 23
Q ss_pred eEEEEEeCCCCCChhhHH--HHHhhhccCCCCcEEEEecCc
Q 001281 291 KFLLVLDDVWNENYSLWE--DLKAPFLAAAPNSKIIVTTRH 329 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtR~ 329 (1108)
.=|||+||+.......|. .+...+.....+..+||||..
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 459999999554333332 333333322222468888875
No 198
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.75 E-value=0.017 Score=71.73 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=38.6
Q ss_pred CceeccchhHHHHHHHHhCCC-CCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 184 RAVYGRDDDKAKILDMVLSDD-PSDSMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
..++|.++-++++.+++.... .+..+.+++.++|++|+|||++|+.+++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 458899999999888664221 1112235899999999999999999998653
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.75 E-value=0.0022 Score=63.58 Aligned_cols=99 Identities=23% Similarity=0.296 Sum_probs=50.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
.-+.++|..|+|||.||.++.+....++ + .+.|+++ .+++ ..+..... .....+.. +.+. +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g--~-~v~f~~~------~~L~----~~l~~~~~-~~~~~~~~----~~l~-~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKG--Y-SVLFITA------SDLL----DELKQSRS-DGSYEELL----KRLK-R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEH------HHHH----HHHHCCHC-CTTHCHHH----HHHH-T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCC--c-ceeEeec------Ccee----cccccccc-ccchhhhc----Cccc-c
Confidence 5689999999999999999887643222 2 3455553 3333 33332211 11122222 2222 2
Q ss_pred eEEEEEeCCCCCChhhHHH--HHhhhccC-CCCcEEEEecCc
Q 001281 291 KFLLVLDDVWNENYSLWED--LKAPFLAA-APNSKIIVTTRH 329 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 329 (1108)
-=||||||+-......|.. +...+... ..+ .+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 3478899997665555543 22222211 223 68888874
No 200
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.74 E-value=0.0067 Score=74.87 Aligned_cols=121 Identities=15% Similarity=0.213 Sum_probs=71.2
Q ss_pred CceeccchhHHHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.++.++.+...+..... ++....++.++|+.|+|||+||+.++... +...+.++.++..+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKH--- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcc---
Confidence 4678999888888888764221 12234578899999999999999998753 2223445544422211
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCC-ceEEEEEeCCCCCChhhHHHHHhhhcc
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKALDG-KKFLLVLDDVWNENYSLWEDLKAPFLA 316 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~ 316 (1108)
.+...++.+. .....++ ...+.+.++. ...+++||++...+.+.+..+...+..
T Consensus 525 -~~~~lig~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 -TVSRLIGAPP-GYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -cHHHHhcCCC-CCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1112223221 1111111 1123333333 345999999988777777777776654
No 201
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.72 E-value=0.005 Score=76.53 Aligned_cols=136 Identities=16% Similarity=0.132 Sum_probs=77.0
Q ss_pred CceeccchhHHHHHHHHhCCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.+..++.+.+.+.... .+.....++.++|+.|+|||.+|+.+....-.. ....+-++++...+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~---~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG---EQNLITINMSEFQEA---- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC---CcceEEEeHHHhhhh----
Confidence 468999999999998885421 123345688999999999999998887653111 111122222221111
Q ss_pred HHHHHHhcCCCC--CcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEEe
Q 001281 260 MALLESITCKPC--DLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIVT 326 (1108)
Q Consensus 260 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 326 (1108)
..+..-++.++. +...-..+...++ +....+|+||++...++..++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111111222211 1111112222232 2455799999997777777777776665442 45667777
Q ss_pred cCc
Q 001281 327 TRH 329 (1108)
Q Consensus 327 tR~ 329 (1108)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 202
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.70 E-value=0.0072 Score=75.44 Aligned_cols=137 Identities=16% Similarity=0.196 Sum_probs=75.8
Q ss_pred CceeccchhHHHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.+..++.+...+..... ++....++.++|+.|+|||++|+.+.+..-.. ....+.+.++..... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~---~~~~i~id~se~~~~-~-- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS---DDAMVRIDMSEFMEK-H-- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC---CCcEEEEEhHHhhhh-h--
Confidence 4689999999888888764321 12223578899999999999999998643211 112333444322111 0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCc-eEEEEEeCCCCCChhhHHHHHhhhccC----C-------CCcEEEEec
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKALDGK-KFLLVLDDVWNENYSLWEDLKAPFLAA----A-------PNSKIIVTT 327 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivTt 327 (1108)
....-++.+ +.....++ ...+.+.++.+ .-+|+||++...+...+..+...+..+ + ..+-||+||
T Consensus 642 -~~~~LiG~~-pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 642 -SVSRLVGAP-PGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred -hHHHHhCCC-Ccccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 111122322 21111111 11222333222 369999999777777777777766433 1 223367777
Q ss_pred Cc
Q 001281 328 RH 329 (1108)
Q Consensus 328 R~ 329 (1108)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 64
No 203
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.66 E-value=0.0076 Score=65.72 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=64.7
Q ss_pred HHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccce-eEEEEeCCC-CCHHHHHHHHHHHhcCCC
Q 001281 193 KAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDI-KAWVCVSDE-FDVLSISMALLESITCKP 270 (1108)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 270 (1108)
..++++.+..-.. -.-+.|+|..|+|||||++.+.+..... +-+. ++|+.+.+. .++.++.+.+...+....
T Consensus 120 ~~RvID~l~PiGk----GQR~LIvG~pGtGKTTLl~~la~~i~~~--~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIGK----GQRGLIVAPPRAGKTVLLQQIAAAVAAN--HPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecCC----CceEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 3457777764322 2355899999999999999988754321 2333 467777754 467888888888776654
Q ss_pred CCcccH-----HHHHHHHHHHh--CCceEEEEEeCC
Q 001281 271 CDLKAL-----NEVQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 271 ~~~~~~-----~~~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
.+.... ......+.+++ .+++++||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 332221 11222223333 589999999999
No 204
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.036 Score=62.59 Aligned_cols=98 Identities=16% Similarity=0.293 Sum_probs=63.9
Q ss_pred cCCceeccchhHHHHHHHHhCCCC-------CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDP-------SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
.-.++-|.+..+.++.+++..-.. +-...+-|.++|++|.|||.||+++..+..+ .| +.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v---Pf-----~~isAp-- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV---PF-----LSISAP-- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC---ce-----Eeecch--
Confidence 345788999999998888754211 1234677889999999999999999998765 23 222221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCC
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVW 300 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 300 (1108)
+|+..+.+ .+.+.+.+.+.+.-..-+|++++|++.
T Consensus 258 ------eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ------EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ------hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 22222222 223333344445556789999999983
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.056 Score=59.26 Aligned_cols=93 Identities=14% Similarity=0.202 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhhhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCc
Q 001281 289 GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHVASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDH 366 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 366 (1108)
+++-++|+|++..-+...+..+...+....+++.+|.+|.+ ..+...+ .-...+.+.++++++..+.+..... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~---~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV---A- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC---C-
Confidence 45668889999877778888888888877777777666655 4443332 2226789999999999888876521 1
Q ss_pred cchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 367 IHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 367 ~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
+ ...++..++|.|.....+
T Consensus 207 --------~-~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 --------D-ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --------h-HHHHHHHcCCCHHHHHHH
Confidence 1 224577889999765444
No 206
>PRK12377 putative replication protein; Provisional
Probab=96.62 E-value=0.0051 Score=64.13 Aligned_cols=101 Identities=23% Similarity=0.125 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
..+.++|..|+|||+||.++++..... ...++++++. +++..+-..... .....+ +.+.+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cC
Confidence 578999999999999999999875432 2234565543 344444333211 111111 22223 35
Q ss_pred eEEEEEeCCCCCChhhHHH--HHhhhccC-CCCcEEEEecCc
Q 001281 291 KFLLVLDDVWNENYSLWED--LKAPFLAA-APNSKIIVTTRH 329 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 329 (1108)
--|||+||+.......|.. +...+... ...--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6699999995544344542 33333221 233457888864
No 207
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.59 E-value=0.025 Score=54.32 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=72.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEE---eC------------------CCC---------------
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVC---VS------------------DEF--------------- 253 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~------------------~~~--------------- 253 (1108)
-..+.++|++|.||||+.+.+|...+... +.+|+. ++ +.+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~----G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTR----GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCC----ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 36899999999999999999998765422 344442 00 000
Q ss_pred ------C---HHHHHHHHHHHhcCCC------CCcccHHHHHHHHHHHhCCceEEEEEeCCC-C-CChhhHHHHHhhhcc
Q 001281 254 ------D---VLSISMALLESITCKP------CDLKALNEVQVQLQKALDGKKFLLVLDDVW-N-ENYSLWEDLKAPFLA 316 (1108)
Q Consensus 254 ------~---~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~-~-~~~~~~~~l~~~l~~ 316 (1108)
. ..+-..+.++..+... .....-++-...|.+.+-+++-+|+-|.=- + +....|+-+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 1 1122222333333221 111222333445777788899999998531 1 112445544333333
Q ss_pred CCCCcEEEEecCchhhhhhcc
Q 001281 317 AAPNSKIIVTTRHSHVASTMG 337 (1108)
Q Consensus 317 ~~~gs~iivTtR~~~v~~~~~ 337 (1108)
...|+.||++|-+.++...+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 567999999999988877653
No 208
>PRK06921 hypothetical protein; Provisional
Probab=96.58 E-value=0.011 Score=62.76 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=54.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
...+.++|..|+|||+||.++++....+ ....+++++.. +++..+.... +.....+ +.+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~--~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~-~~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK--KGVPVLYFPFV------EGFGDLKDDF----------DLLEAKL-NRM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh--cCceEEEEEHH------HHHHHHHHHH----------HHHHHHH-HHh-c
Confidence 4578999999999999999999865322 12345666542 2222222211 1111112 223 2
Q ss_pred ceEEEEEeCCCC-----CChhhHHH--HHhhhccC-CCCcEEEEecCc
Q 001281 290 KKFLLVLDDVWN-----ENYSLWED--LKAPFLAA-APNSKIIVTTRH 329 (1108)
Q Consensus 290 kr~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 329 (1108)
+--||||||+.. +....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 346999999932 22334543 33333321 234568888864
No 209
>PRK06526 transposase; Provisional
Probab=96.57 E-value=0.004 Score=65.46 Aligned_cols=99 Identities=21% Similarity=0.181 Sum_probs=51.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
.-+.++|++|+|||+||..+.......+ + .+.|+ +..++...+..... . ... ...+.+ + .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g--~-~v~f~------t~~~l~~~l~~~~~----~-~~~---~~~l~~-l-~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAG--H-RVLFA------TAAQWVARLAAAHH----A-GRL---QAELVK-L-GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCC--C-chhhh------hHHHHHHHHHHHHh----c-CcH---HHHHHH-h-cc
Confidence 4689999999999999999887543221 2 12332 23334444332211 0 111 122222 2 23
Q ss_pred eEEEEEeCCCCCChhhHH--HHHhhhcc-CCCCcEEEEecCc
Q 001281 291 KFLLVLDDVWNENYSLWE--DLKAPFLA-AAPNSKIIVTTRH 329 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~ 329 (1108)
.-+||+||+.......|. .+...+.. ...+ .+|+||..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~ 200 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNK 200 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCC
Confidence 468999999644322222 23333322 2234 48888875
No 210
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.56 E-value=0.01 Score=64.27 Aligned_cols=122 Identities=21% Similarity=0.256 Sum_probs=70.5
Q ss_pred ccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhc
Q 001281 188 GRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESIT 267 (1108)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 267 (1108)
+|........+++..-.. +...+-+.++|..|+|||.||.++++....+ . ..+.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~-~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g-~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP-GEKVKGLYLYGDFGVGKSYLLAAIANELAKK--G-VSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--C-CCEEEEEHH------HHHHHHHHHHh
Confidence 444445555555542211 1124678999999999999999999876422 2 234555543 44455544442
Q ss_pred CCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHH--HHhhhcc-C-CCCcEEEEecCc
Q 001281 268 CKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWED--LKAPFLA-A-APNSKIIVTTRH 329 (1108)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~gs~iivTtR~ 329 (1108)
.. +..+. + +.+ .+-=||||||+.-+....|.. +...+.. . ..+-.+|+||--
T Consensus 205 ~~-----~~~~~---l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKEK---I-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHHH---H-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 12222 2 222 245689999997776677763 4444422 2 355678888874
No 211
>PRK09183 transposase/IS protein; Provisional
Probab=96.55 E-value=0.0081 Score=63.68 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
..+.|+|++|+|||+||..+....... .. .+.+++ ..++...+...... .. ....+.+.+ .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~--G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA--GI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc--CC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cC
Confidence 467799999999999999997653221 11 233333 22333333222111 01 112222222 34
Q ss_pred eEEEEEeCCCCCChhhHH--HHHhhhcc-CCCCcEEEEecCc
Q 001281 291 KFLLVLDDVWNENYSLWE--DLKAPFLA-AAPNSKIIVTTRH 329 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~ 329 (1108)
.-++|+||+.......+. .+...+.. ...++ +||||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 569999999654333333 23333322 12344 8888874
No 212
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.55 E-value=0.0003 Score=79.93 Aligned_cols=106 Identities=25% Similarity=0.272 Sum_probs=80.8
Q ss_pred cccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcch-hcCCCCcEEEeeCccccccchh
Q 001281 558 SLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSI-KELKLLRYLNVAGTQIRSLPES 636 (1108)
Q Consensus 558 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~l~~L~~L~Ls~~~i~~lp~~ 636 (1108)
++.-++.+++|.+.+|.. .+ -+.+..+.+|+.|||++|.+..+|.-= ..+ +|..|.+++|.++++ ..
T Consensus 182 SLqll~ale~LnLshNk~--------~~--v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~g 249 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKF--------TK--VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RG 249 (1096)
T ss_pred HHHHHHHhhhhccchhhh--------hh--hHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hh
Confidence 344567888888877653 11 135788999999999999999887432 233 499999999999887 56
Q ss_pred hhcCccCcEeeecCCcCCcccc--hhccCCCCccEEeecCCC
Q 001281 637 TSSLMHLRVLILRDCSRLTRLP--SKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 637 i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~ 676 (1108)
|.+|.+|+.||+++|- +.... .-++.|..|+.|.|.||.
T Consensus 250 ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8999999999999963 32221 226788999999999997
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.022 Score=62.36 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=54.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE-FDVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
+.++|+++|++|+||||++..++...... . ..+..++.... ....+-++...+.++.+.....+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--K-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--C-CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 35899999999999999999988654321 1 13444544321 12223334444444443222234445554444432
Q ss_pred CC-ceEEEEEeCCCCCC--hhhHHHHHhhhc
Q 001281 288 DG-KKFLLVLDDVWNEN--YSLWEDLKAPFL 315 (1108)
Q Consensus 288 ~~-kr~LlVlDdv~~~~--~~~~~~l~~~l~ 315 (1108)
.. +.=+|++|-.-... .....++...+.
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 21 23477788774322 233445544443
No 214
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.46 E-value=0.19 Score=55.66 Aligned_cols=204 Identities=12% Similarity=0.117 Sum_probs=118.3
Q ss_pred cchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHH-HHHhcCccccccccceeEEEEeCCC---CCHHHHHHHHHH
Q 001281 189 RDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLA-REVYNDKAVSDIKFDIKAWVCVSDE---FDVLSISMALLE 264 (1108)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 264 (1108)
|.+..++|..||.... -..|.|.|+-|.||+.|+ .++..+.+ .+..+.+.+- .+-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~-----~TFIvV~GPrGSGK~elV~d~~L~~r~-------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP-----NTFIVVQGPRGSGKRELVMDHVLKDRK-------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC-----CeEEEEECCCCCCccHHHHHHHHhCCC-------CEEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999997654 369999999999999999 77776532 1444444321 122233333333
Q ss_pred Hhc-----------------------CCCCCc-ccH-HHHH-------HHHHH-------------------HhC---Cc
Q 001281 265 SIT-----------------------CKPCDL-KAL-NEVQ-------VQLQK-------------------ALD---GK 290 (1108)
Q Consensus 265 ~l~-----------------------~~~~~~-~~~-~~~~-------~~l~~-------------------~l~---~k 290 (1108)
++| +...+. .+. .++. ..|++ +|. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 332 211111 111 1111 11111 111 13
Q ss_pred eEEEEEeCCCCCC---hhhHHHHHhh--hccCCCCcEEEEecCchhhhhhc------cccceeeCCCCChhhHHHHHHhh
Q 001281 291 KFLLVLDDVWNEN---YSLWEDLKAP--FLAAAPNSKIIVTTRHSHVASTM------GSVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 291 r~LlVlDdv~~~~---~~~~~~l~~~--l~~~~~gs~iivTtR~~~v~~~~------~~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
|=+||+|+.-... ...|+.+... .....+-.+||++|-+......+ ...+.+.|...+++.|.++...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 5689999984322 1223333221 11234567899999875544433 23467899999999999999888
Q ss_pred hcCCCCc-------------cch--hhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCCh
Q 001281 360 AFYTRDH-------------IHV--QRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGD 404 (1108)
Q Consensus 360 ~~~~~~~-------------~~~--~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~ 404 (1108)
....... ... ...........++..||=-.-+..+++.++...++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 7543110 000 00111455678888999999999999999877653
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.0086 Score=62.29 Aligned_cols=102 Identities=20% Similarity=0.213 Sum_probs=57.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
..+.++|.+|+|||+||.++++.....+ ..+++++ ..++...+-..... .....+ .+.+.+. +
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 4788999999999999999998753322 2345553 33444444333211 111111 2333344 3
Q ss_pred eEEEEEeCCCCCChhhHHH--HHhhhcc-CCCCcEEEEecCc
Q 001281 291 KFLLVLDDVWNENYSLWED--LKAPFLA-AAPNSKIIVTTRH 329 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 329 (1108)
.=+||+||+.......|+. +...+.. ....-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889997665566664 2222222 1234567888864
No 216
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.01 Score=59.21 Aligned_cols=27 Identities=44% Similarity=0.546 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
+..+|.++|+.|+||||+|+.++....
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999988653
No 217
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.43 E-value=0.011 Score=72.04 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=69.3
Q ss_pred CceeccchhHHHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.++.++.+...+..... .......+.++|+.|+|||++|+.+...... ..+.++++......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~------~~i~id~se~~~~~--- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI------ELLRFDMSEYMERH--- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC------CcEEeechhhcccc---
Confidence 3579999999988888763211 1223467899999999999999999875421 12333443322111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhC-CceEEEEEeCCCCCChhhHHHHHhhhcc
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKALD-GKKFLLVLDDVWNENYSLWEDLKAPFLA 316 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 316 (1108)
.+..-++.++ .....+ ....+.+.++ ....+|+||++.....+.+..+...+..
T Consensus 529 -~~~~LiG~~~-gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 529 -TVSRLIGAPP-GYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred -cHHHHcCCCC-Cccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 1112223221 111110 0112223333 3356999999977777777777766643
No 218
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.41 E-value=0.012 Score=73.56 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=77.7
Q ss_pred CceeccchhHHHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.++.++.+...+..... ++....++.++|+.|+|||+||+.+.+..-.. -...+-++.+...+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~---~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS---EDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC---ccceEEEEchhccccccH-
Confidence 5689999999999888753221 22234567799999999999999988743110 112233333332221111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCce-EEEEEeCCCCCChhhHHHHHhhhccC-----------CCCcEEEEec
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKALDGKK-FLLVLDDVWNENYSLWEDLKAPFLAA-----------APNSKIIVTT 327 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTt 327 (1108)
..-++.+ +.....++ ...+.+.++.++ .+++||++...+...+..+...+..+ -..+-||+||
T Consensus 585 ---~~l~g~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 585 ---SKLIGSP-PGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred ---HHhcCCC-CcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 1112222 11111111 112334444454 58899999877777787777776543 1345667777
Q ss_pred Cc
Q 001281 328 RH 329 (1108)
Q Consensus 328 R~ 329 (1108)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 64
No 219
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.40 E-value=0.033 Score=64.28 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=90.5
Q ss_pred CceeccchhHHHHHHHHhC-----CCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLS-----DDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSI 258 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 258 (1108)
.++.|.+..++.+.+.... ...+-...+-|-++|++|.|||.+|+.+.+.... .| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~---~~---~~l~~~~------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL---PL---LRLDVGK------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CE---EEEEhHH-------
Confidence 4678887766666543210 0111123567889999999999999999986533 11 1111111
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC--------ChhhHHH----HHhhhccCCCCcEEEEe
Q 001281 259 SMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE--------NYSLWED----LKAPFLAAAPNSKIIVT 326 (1108)
Q Consensus 259 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~~~~~----l~~~l~~~~~gs~iivT 326 (1108)
+.... .+ .....+...+...-...+++|++|++..- +...-.. +...+.....+.-||.|
T Consensus 295 ---l~~~~----vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 ---LFGGI----VG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---hcccc----cC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 11000 00 01111222222222357899999998421 0001111 22222223344556667
Q ss_pred cCchhhh-hhc----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 327 TRHSHVA-STM----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 327 tR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
|...... ..+ .-+..+.++..+.++-.++|..+........... .....+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~----~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKK----YDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccc----cCHHHHHhhcCCCC
Confidence 7654321 111 2235678888888888888887764432110001 22356666666643
No 220
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.39 E-value=0.036 Score=55.25 Aligned_cols=106 Identities=24% Similarity=0.286 Sum_probs=63.9
Q ss_pred ccCCceeccchhHHHHHHHH---hCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHH
Q 001281 181 RTERAVYGRDDDKAKILDMV---LSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLS 257 (1108)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L---~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 257 (1108)
..-..++|.+..++.+++-- ..+.. .--|-+||.-|+|||+|++++.+....++ -. -|.|.+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~p----ANnVLLwGaRGtGKSSLVKA~~~e~~~~g---lr--LVEV~k------ 121 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLP----ANNVLLWGARGTGKSSLVKALLNEYADEG---LR--LVEVDK------ 121 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCc----ccceEEecCCCCChHHHHHHHHHHHHhcC---Ce--EEEEcH------
Confidence 33456899999988887543 22221 34578999999999999999998754332 11 222221
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhcc
Q 001281 258 ISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLA 316 (1108)
Q Consensus 258 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~ 316 (1108)
.+..++..+...++. ...||.|..||..-+ +.+.+..+...+..
T Consensus 122 -------------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 122 -------------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred -------------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 111222222222221 467999999999443 33456666666653
No 221
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.38 E-value=0.046 Score=59.86 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=45.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-hhhhcc-ccceeeCCCCChhhHHHHHHhh
Q 001281 289 GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-VASTMG-SVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
+++-++|+|++..-+......+...+.....++.+|++|.+.. +...+. -...+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688866666666667666665445676777777643 332221 2257889999999988887654
No 222
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.35 E-value=0.0029 Score=68.60 Aligned_cols=52 Identities=13% Similarity=0.298 Sum_probs=42.7
Q ss_pred CceeccchhHHHHHHHHhCCCCC-CCCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPS-DSMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.+++|.++.++++++++.....+ +.+.+++.++|++|+||||||+.+.+...
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 37999999999999998754332 23468999999999999999999988653
No 223
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.34 E-value=0.0048 Score=59.66 Aligned_cols=97 Identities=23% Similarity=0.284 Sum_probs=60.5
Q ss_pred cccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhh-hcCccCcEeeecCCcCCcccch--hccCCCCccEEee
Q 001281 596 KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPEST-SSLMHLRVLILRDCSRLTRLPS--KMWNLINLRHLDI 672 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l 672 (1108)
....+||++|.+..++ .|..++.|.+|.|++|+|+.+-+.+ .-+++|++|.+.+|+ +.++-+ .+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeee
Confidence 4556777777776654 3566777788888888887775555 345667888887754 333321 2456777777777
Q ss_pred cCCCCCCcCCc----cCCCCCCCCccC
Q 001281 673 EGANSLEGMPY----GMEKLKHLQTLS 695 (1108)
Q Consensus 673 ~~~~~~~~lp~----~i~~L~~L~~L~ 695 (1108)
-+|. ...-+. -+.++++|++|+
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEee
Confidence 7775 333221 145666666665
No 224
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.34 E-value=0.037 Score=68.73 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=92.3
Q ss_pred CCceeccchhHHHHHHHHhCC--------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLSD--------DPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.++.|.+..++++.+++... .-+-...+-|.++|++|+|||++|+.+++.... .| +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~---~~---i~i~~~---- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA---YF---ISINGP---- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC---eE---EEEecH----
Confidence 346889999999888776321 001122466889999999999999999886422 22 222211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC-----------hhhHHHHHhhhccC-CCCcE
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN-----------YSLWEDLKAPFLAA-APNSK 322 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~ 322 (1108)
++ ..... ......+...+.......+.+|++|++..-. ......+...+... ..+..
T Consensus 247 --~i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 --EI----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred --HH----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11 00000 0111222233333345667899999973210 01122233333221 22334
Q ss_pred EEE-ecCchh-hhhhcc----ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH
Q 001281 323 IIV-TTRHSH-VASTMG----SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL 389 (1108)
Q Consensus 323 iiv-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 389 (1108)
++| ||.... +...+. -...+.+...+.++-.+++........-..+ .....+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d------~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED------VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc------cCHHHHHHhCCCCCH
Confidence 444 444322 211111 1245777777888877887754422211111 234577888887643
No 225
>PRK04296 thymidine kinase; Provisional
Probab=96.34 E-value=0.0089 Score=60.23 Aligned_cols=113 Identities=10% Similarity=-0.045 Sum_probs=62.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHHhC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCD--LKALNEVQVQLQKALD 288 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 288 (1108)
.++.|+|..|.||||+|..+..+....+ ..++.+. ..++.......++..++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 5788999999999999988877653221 1222231 1112222233345555432211 2234444444544 33
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh
Q 001281 289 GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH 331 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 331 (1108)
++.-+||+|.+..-+.++..++...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 45568999999543223233333332 346789999999744
No 226
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.28 E-value=0.00032 Score=83.56 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=75.1
Q ss_pred CCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccC-CcccccccccCCccccCCcccEEeecCCCCCCCCC
Q 001281 822 SMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENL-PEWECWDTKENGLLAGFSSLRELSILKCPKFSGKL 900 (1108)
Q Consensus 822 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 900 (1108)
...++|+.|.+.+|..+...... ......+.|+.|.+..+ ................+++|+.|+++.|..++...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLD----ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hhCchhhHhhhcccccCChhhHH----HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 34788999999888766543210 12245788888888762 22111110011123456888888888876554221
Q ss_pred ----CCCCCCccEEEEccCCCccc-----cCCCCCcccEEEEeecCCcccc----CCCCCCCccEEEEe
Q 001281 901 ----PELLPSLEILVISKCADLVV-----PFSSFPMLCRLEIEECKGITCS----TPIDCKLIESMTIS 956 (1108)
Q Consensus 901 ----p~~l~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~c~~l~~~----~~~~l~~L~~L~l~ 956 (1108)
-...++|+.|.+.+|..++. ....+++|++|+++.|..+... ...++++|+.|.+.
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 12356888888777775431 2234777888888888765321 12345555555433
No 227
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.26 E-value=0.012 Score=58.85 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=63.1
Q ss_pred ccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC---------CHH--
Q 001281 188 GRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF---------DVL-- 256 (1108)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~---------~~~-- 256 (1108)
.+..+....++.|.. ..+|.+.|++|.|||.||.+..-+.-..+ .++.++++.-.-.. +..
T Consensus 4 p~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455566677777762 46999999999999999987776543333 67777776422110 000
Q ss_pred --HHHHHHHHHhcCCCCCcccHHHHHHH------HHHHhCCc---eEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEE
Q 001281 257 --SISMALLESITCKPCDLKALNEVQVQ------LQKALDGK---KFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIV 325 (1108)
Q Consensus 257 --~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 325 (1108)
-....+.+.+..-. .....+.+... -..+++++ ..+||+|++.+.+..++..+ +-..+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEE
Confidence 01111222221110 11112222110 01244554 57999999977666555554 445678999999
Q ss_pred ecCch
Q 001281 326 TTRHS 330 (1108)
Q Consensus 326 TtR~~ 330 (1108)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 87654
No 228
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.26 E-value=0.012 Score=60.61 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=35.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHH
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
.-.++.|+|++|+|||++|.++...... ....++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCC-CCHHHHHH
Confidence 3589999999999999999988765422 345688999876 55554443
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.22 E-value=0.0081 Score=65.59 Aligned_cols=102 Identities=22% Similarity=0.199 Sum_probs=55.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
.-+.++|..|+|||.||.++++....++ ..++++++. +++..+...-. . ...+.... .+.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~------~l~~~l~~~~~-~--~~~~~~~~----~~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTAD------ELIEILREIRF-N--NDKELEEV----YDLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHH------HHHHHHHHHHh-c--cchhHHHH----HHHhc-c
Confidence 5689999999999999999998653222 245566543 23333322110 0 01111111 12222 2
Q ss_pred eEEEEEeCCCCCChhhHH--HHHhhhcc-CCCCcEEEEecCc
Q 001281 291 KFLLVLDDVWNENYSLWE--DLKAPFLA-AAPNSKIIVTTRH 329 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~ 329 (1108)
-=|||+||+..+....|. .+...+.. ...+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 348999999665444443 33333332 1235578888874
No 230
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.21 E-value=0.0022 Score=61.14 Aligned_cols=88 Identities=23% Similarity=0.144 Sum_probs=47.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceE
Q 001281 213 IPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKF 292 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 292 (1108)
|.++|++|+|||+||+.++.... ....-+.++...+..++....--. ... .......+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----ccee
Confidence 67999999999999999998531 123345677777766554222111 000 000000000001 1789
Q ss_pred EEEEeCCCCCChhhHHHHHhhh
Q 001281 293 LLVLDDVWNENYSLWEDLKAPF 314 (1108)
Q Consensus 293 LlVlDdv~~~~~~~~~~l~~~l 314 (1108)
++|||++...+.+.++.+...+
T Consensus 68 il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHH
Confidence 9999999655555555554444
No 231
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.21 E-value=0.022 Score=54.47 Aligned_cols=116 Identities=17% Similarity=0.110 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC---CCCHHHHHHHHHHHh-----cCC----CCCc-cc--
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD---EFDVLSISMALLESI-----TCK----PCDL-KA-- 275 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l-----~~~----~~~~-~~-- 275 (1108)
..|-|++..|.||||+|....-+....+ + .+.++.+-. ......+++.+ ..+ +.. ..+. .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g--~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG--Y-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC--C-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 4788888899999999976655432211 1 233333322 22333333322 000 000 0000 11
Q ss_pred -HHHHHHHHHHHhCC-ceEEEEEeCCCC---CChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 276 -LNEVQVQLQKALDG-KKFLLVLDDVWN---ENYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 276 -~~~~~~~l~~~l~~-kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
..+..+..++.+.. +-=|||||++-. -.....+.+...+.....+..||+|.|+.
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11122333444444 455999999822 12234567777777777788999999984
No 232
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.19 E-value=0.17 Score=57.37 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=74.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCce
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKK 291 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 291 (1108)
++.|.|+-++||||+++.+...... . .+++..-+......- ..+....+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~---~---~iy~~~~d~~~~~~~-----------------l~d~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE---E---IIYINFDDLRLDRIE-----------------LLDLLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc---c---eEEEEecchhcchhh-----------------HHHHHHHHHHhhccCC
Confidence 9999999999999999777664321 1 444443222111110 1111122222222278
Q ss_pred EEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhh-----hc-cccceeeCCCCChhhHHH
Q 001281 292 FLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAS-----TM-GSVEHYNLSLLSDDDCWF 354 (1108)
Q Consensus 292 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-----~~-~~~~~~~l~~L~~~~~~~ 354 (1108)
..|+||.|... ..|+.....+...++. +|++|+-+..... .+ |-...+.+.||+-.|...
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 99999999554 7899988888876666 8888887654332 22 223568999999988755
No 233
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.18 E-value=0.041 Score=53.98 Aligned_cols=80 Identities=13% Similarity=0.190 Sum_probs=42.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHHHhC
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKA---LNEVQVQLQKALD 288 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l~ 288 (1108)
++.|.|.+|.||||+|..+...... .++++.-...+ ..+..+.+.......+..-.. ..++...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~------~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL------QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC------CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 6899999999999999998865321 13344333333 334444443333222221111 1123333444333
Q ss_pred CceEEEEEeCC
Q 001281 289 GKKFLLVLDDV 299 (1108)
Q Consensus 289 ~kr~LlVlDdv 299 (1108)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 3 337888986
No 234
>PRK04132 replication factor C small subunit; Provisional
Probab=96.18 E-value=0.11 Score=63.57 Aligned_cols=154 Identities=12% Similarity=-0.022 Sum_probs=94.4
Q ss_pred CCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEe
Q 001281 218 MAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLD 297 (1108)
Q Consensus 218 ~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 297 (1108)
|.++||||+|..++++.-..+ .-..++-++++....... .++++..+....+ .-..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid~-IR~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGEN-WRHNFLELNASDERGINV-IREKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 668999999999998742111 112345566665444432 3333332211100 001245799999
Q ss_pred CCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhcc-ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhH
Q 001281 298 DVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTMG-SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGL 375 (1108)
Q Consensus 298 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 375 (1108)
++..-+..+...+...+......+++|.+|.+. .+...+. -...+++.++++++-...+...+....-. +.++
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-----i~~e 712 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-----LTEE 712 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-----CCHH
Confidence 998877778888888877656677777766653 3332222 23679999999999888777665322111 1126
Q ss_pred HHHHHHHhcCCchHHHH
Q 001281 376 FHKKVVQKCRGLPLAAK 392 (1108)
Q Consensus 376 ~~~~i~~~c~glPLai~ 392 (1108)
....|++.++|.+-.+.
T Consensus 713 ~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 713 GLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 77899999999874443
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.17 E-value=0.013 Score=61.65 Aligned_cols=81 Identities=23% Similarity=0.225 Sum_probs=48.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
..-+.++|.+|+|||.||.++.++.- + .--.+.++++ .++..++...... . ....++.+.+ .
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l-~ 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFITA------PDLLSKLKAAFDE----G----RLEEKLLREL-K 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHh-h
Confidence 45689999999999999999998765 2 2223555543 3444444444432 0 1112222222 1
Q ss_pred ceEEEEEeCCCCCChhhHH
Q 001281 290 KKFLLVLDDVWNENYSLWE 308 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~~~~~ 308 (1108)
+-=||||||+.......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2348999999776556655
No 236
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.15 E-value=0.023 Score=55.86 Aligned_cols=40 Identities=33% Similarity=0.402 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
++.|+|.+|+||||+|..+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 3689999999999999999876432 234577777765543
No 237
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.13 E-value=0.0026 Score=64.29 Aligned_cols=82 Identities=24% Similarity=0.316 Sum_probs=39.7
Q ss_pred CCCcccEEEecCccccccCcchhcCCCCcEEEeeCc--ccc-ccchhhhcCccCcEeeecCCcCC--cccchhccCCCCc
Q 001281 593 KFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGT--QIR-SLPESTSSLMHLRVLILRDCSRL--TRLPSKMWNLINL 667 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~--~i~-~lp~~i~~L~~L~~L~l~~~~~~--~~lp~~i~~L~~L 667 (1108)
.+..|..|++.+..++.+- .+..|++|++|.++.| ++. .++....++++|++|++++|..- ..++. +.++.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence 3344445555555544331 2334556666666666 333 33434444566666666664321 11111 3455556
Q ss_pred cEEeecCCC
Q 001281 668 RHLDIEGAN 676 (1108)
Q Consensus 668 ~~L~l~~~~ 676 (1108)
..|++.+|.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 666666554
No 238
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.13 E-value=0.015 Score=60.81 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=33.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSI 258 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 258 (1108)
-.++.|+|.+|+|||++|.+++..... ....++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~---~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK---NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEECC-CCCHHHH
Confidence 579999999999999999998875432 23567899887 5554443
No 239
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.12 E-value=0.0039 Score=57.78 Aligned_cols=22 Identities=50% Similarity=0.664 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
No 240
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.035 Score=61.99 Aligned_cols=143 Identities=16% Similarity=0.181 Sum_probs=80.3
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc------------------ccceeEE
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI------------------KFDIKAW 246 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~w 246 (1108)
.++|-+....++..+..... ...+.+-++|+.|+||||+|.++.+..-.... ....+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhcC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 35677777888888876433 12346899999999999999988876421110 0012222
Q ss_pred EEeCCCCC---HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEE
Q 001281 247 VCVSDEFD---VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKI 323 (1108)
Q Consensus 247 v~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 323 (1108)
+..+.... ..+..+++.+...... ..++.-++++|++..-+.+.-..+...+......+.+
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 33222222 1222222222221110 0356789999999666555566666666666778888
Q ss_pred EEecCch-hhhhhccc-cceeeCCC
Q 001281 324 IVTTRHS-HVASTMGS-VEHYNLSL 346 (1108)
Q Consensus 324 ivTtR~~-~v~~~~~~-~~~~~l~~ 346 (1108)
|++|... .+...... ...+++.+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCC
Confidence 8888743 33322211 13456655
No 241
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.10 E-value=0.043 Score=64.78 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=36.1
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|.+..+..+...+.... ..-|.|+|+.|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~-----~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN-----PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999988765432 245678999999999999999753
No 242
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.08 E-value=0.074 Score=66.08 Aligned_cols=178 Identities=14% Similarity=0.139 Sum_probs=93.3
Q ss_pred CceeccchhHHHHHHHHhCCC--------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 184 RAVYGRDDDKAKILDMVLSDD--------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
.++.|.+..++++.+.+.-+- .+-...+-+.++|++|.|||++|+++++.... .| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~---~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA---NF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE-----EEEehH---
Confidence 457888888887776653110 01123456889999999999999999986432 22 222211
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC--------Chh----hHHHHHhhhcc--CCCCc
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE--------NYS----LWEDLKAPFLA--AAPNS 321 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~----~~~~l~~~l~~--~~~gs 321 (1108)
+ ++.... + .....+...+...-...+++|++|++..- ... ....+...+.. ...+.
T Consensus 522 -~----l~~~~v----G-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -E----ILSKWV----G-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -H----Hhhccc----C-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1 111110 0 01112222222333456899999998321 001 11223233322 22345
Q ss_pred EEEEecCchhhhhhc-----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 322 KIIVTTRHSHVASTM-----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 322 ~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
-||.||...+..... .-...+.++..+.++-.++|..+.....-..+ .....+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~------~~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED------VDLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc------CCHHHHHHHcCCCC
Confidence 566677554433221 12356788888888888888765533221111 12356777777754
No 243
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.05 E-value=0.2 Score=58.16 Aligned_cols=201 Identities=15% Similarity=0.128 Sum_probs=114.5
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccc---c--ccccceeEEEEeCCCCCHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAV---S--DIKFDIKAWVCVSDEFDVLS 257 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~--~~~f~~~~wv~~~~~~~~~~ 257 (1108)
+..+-+|+.+..+|.+.+..--...+.-..+.|.|.+|.|||..+..|.+.... + -..|+ .+.|+.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 345678999999998887542222223459999999999999999999885421 0 11343 34444445567899
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCC---CCCChhhHHHHHhhhcc-CCCCcEEEEecC
Q 001281 258 ISMALLESITCKPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDV---WNENYSLWEDLKAPFLA-AAPNSKIIVTTR 328 (1108)
Q Consensus 258 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv---~~~~~~~~~~l~~~l~~-~~~gs~iivTtR 328 (1108)
++..|..++.+.... .......+..+. +.+.+++++|++ |...+ +-+...|.| ..++||++|-+-
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q---dVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ---DVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH---HHHHHHhcCCcCCCCceEEEEe
Confidence 999999999775432 122223333333 245788888887 32222 223334444 457888877553
Q ss_pred ch--h---------hhhhccccceeeCCCCChhhHHHHHHhhhcCCCC--ccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 329 HS--H---------VASTMGSVEHYNLSLLSDDDCWFVFMNHAFYTRD--HIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 329 ~~--~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
.. + +...+ +...+...+.++.+-.+....+..+... +...+ -++++|+.-.|-.-.|+.+.-
T Consensus 548 aNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aie----lvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIE----LVARKVAAVSGDARRALDICR 622 (767)
T ss_pred cccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHH----HHHHHHHhccccHHHHHHHHH
Confidence 21 1 11111 1245677777777776666665543311 11112 344555554444444444433
No 244
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.02 E-value=0.064 Score=51.25 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
.+++|+|..|.|||||++.+...... ..+.+|+.-.. .++--. +...-+...-.+.+.+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP----DEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC----CceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhcC
Confidence 58999999999999999999876432 12233321100 000000 0111122223455666677
Q ss_pred eEEEEEeCCCC-CChhhHHHHHhhhccCCCCcEEEEecCchhhh
Q 001281 291 KFLLVLDDVWN-ENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVA 333 (1108)
Q Consensus 291 r~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 333 (1108)
+-++++|+-.. -+....+.+...+... +..||++|.+....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 78999998732 2234444555555433 24677777765544
No 245
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.01 E-value=0.0003 Score=83.79 Aligned_cols=60 Identities=27% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCCCCeEEEeecCCCC---CccccccCCcCcceEEEEeCC-CCCCCCC-----CCCCCCCccEEEecCCCC
Q 001281 776 HTNLKKLAITSYSGEN---FPMWIGDLSFSKMEVLELQNC-QNCTSLP-----SLSMLGSLKQLTIKGMTR 837 (1108)
Q Consensus 776 ~~~L~~L~l~~~~~~~---~p~~~~~~~l~~L~~L~L~~~-~~~~~l~-----~l~~l~~L~~L~L~~~~~ 837 (1108)
.++|+.|.+.++.... +-.... .+++|+.|++++| ......+ ....+++|+.|++.++..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 5667777666653221 111111 2467777777763 2211111 233445666666666554
No 246
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.00 E-value=0.086 Score=51.62 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 213 IPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
+.|.|..|.|||++|.++... ....++++.-.+.++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~ 38 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDD 38 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCH
Confidence 578999999999999998764 1234566666666654
No 247
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.99 E-value=0.057 Score=53.37 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=37.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-.++||-++.++++.-.-.+++ .+-+.|.||+|+||||-+..+++..
T Consensus 26 l~dIVGNe~tv~rl~via~~gn-----mP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGN-----MPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCC-----CCceEeeCCCCCchhhHHHHHHHHH
Confidence 4579999999999876664443 5678899999999999888887754
No 248
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.97 E-value=0.084 Score=52.81 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=64.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEE---eCCCCCHHHH------HHHHHHHhcCCCC-----Cccc-
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVC---VSDEFDVLSI------SMALLESITCKPC-----DLKA- 275 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~~~~~~~~~------~~~i~~~l~~~~~-----~~~~- 275 (1108)
.+++|+|..|.|||||++.++..... ..+.+++. +.. .+.... ..++++.++.... ..-+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~----~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKP----SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 68999999999999999999876432 22333321 211 111111 1124444443211 1111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccC-CC-CcEEEEecCchhhh
Q 001281 276 LNEVQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAA-AP-NSKIIVTTRHSHVA 333 (1108)
Q Consensus 276 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~ 333 (1108)
-+...-.+.+.+-..+-++++|+--.. +....+.+...+... .. +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222233456667778889999987322 233444444444432 22 66788888775544
No 249
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.024 Score=62.87 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=41.0
Q ss_pred CCceeccc---hhHHHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 183 ERAVYGRD---DDKAKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 183 ~~~~vGr~---~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
-.++-|-| +|+++|+++|.++.. ++.=++-|.++|++|.|||-||++|+-+..+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 45667766 567788888876532 2334677889999999999999999987655
No 250
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.97 E-value=0.19 Score=54.54 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
..++.++|+|++|.|||.+|++++.+...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 44789999999999999999999997543
No 251
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.97 E-value=0.024 Score=65.51 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=56.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKAL- 287 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 287 (1108)
.-+++-++|++|+||||||+-++++.. | .++=|++|..-+...+-..|...+... ..+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----Y-sVvEINASDeRt~~~v~~kI~~avq~~---------------s~l~ 383 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----Y-SVVEINASDERTAPMVKEKIENAVQNH---------------SVLD 383 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----c-eEEEecccccccHHHHHHHHHHHHhhc---------------cccc
Confidence 468999999999999999999998642 2 355677777666655555554444322 123
Q ss_pred -CCceEEEEEeCCCCCChhhHHHHHhhh
Q 001281 288 -DGKKFLLVLDDVWNENYSLWEDLKAPF 314 (1108)
Q Consensus 288 -~~kr~LlVlDdv~~~~~~~~~~l~~~l 314 (1108)
.+++..||+|.+.-......+.+...+
T Consensus 384 adsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred cCCCcceEEEecccCCcHHHHHHHHHHH
Confidence 267888999999655433444444433
No 252
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.00073 Score=68.06 Aligned_cols=103 Identities=22% Similarity=0.283 Sum_probs=56.5
Q ss_pred CCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccch--hccCCCCccEEe
Q 001281 594 FKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPS--KMWNLINLRHLD 671 (1108)
Q Consensus 594 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~ 671 (1108)
+.+.+.|++.||.++.+. .+.+++.|++|.||-|+|+++ +.+..+++|+.|.|+.|. +..+.+ .+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 344555566666665542 234566666666666666655 335566666666666643 333322 245666666666
Q ss_pred ecCCCCCCcCCcc-----CCCCCCCCccCceee
Q 001281 672 IEGANSLEGMPYG-----MEKLKHLQTLSNFIV 699 (1108)
Q Consensus 672 l~~~~~~~~lp~~-----i~~L~~L~~L~~~~~ 699 (1108)
|..|.....-+.. +.-|++|+.|++..+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 6666544443322 455666666654433
No 253
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.95 E-value=0.019 Score=57.85 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=38.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC-CCCHHHHHHHHHHHhcCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD-EFDVLSISMALLESITCK 269 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 269 (1108)
++|+.++|+.|+||||.+..++.....+ -..+..++... .....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 3799999999999999988777655432 23466676542 234555667777777654
No 254
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.94 E-value=0.059 Score=56.61 Aligned_cols=173 Identities=21% Similarity=0.172 Sum_probs=91.4
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH-----HHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV-----LSI 258 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~-----~~~ 258 (1108)
..++|-.++..++..++.+.-. .++..-|.|+|+.|.|||+|...+..+.+ . .-....-|........ ..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~-~gEsnsviiigprgsgkT~li~~~Ls~~q--~-~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL-HGESNSVIIIGPRGSGKTILIDTRLSDIQ--E-NGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH-hcCCCceEEEccCCCCceEeeHHHHhhHH--h-cCCeEEEEEECccchhhHHHHHHH
Confidence 4588999998888888764321 12235678999999999999988877622 1 2223344555544333 333
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhC------CceEEEEEeCCCCCCh----hhHHHHHhhhc-cCCCCcEEEEec
Q 001281 259 SMALLESITCKPCDLKALNEVQVQLQKALD------GKKFLLVLDDVWNENY----SLWEDLKAPFL-AAAPNSKIIVTT 327 (1108)
Q Consensus 259 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~----~~~~~l~~~l~-~~~~gs~iivTt 327 (1108)
.+++..++....-...+..+....+-..|+ +-+++.|+|..+-... .-.-.+.+.-. ...+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 344443333322222223333334444442 2367888877632211 11112222211 245566777899
Q ss_pred Cchh-------hhhhccccceeeCCCCChhhHHHHHHhhh
Q 001281 328 RHSH-------VASTMGSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 328 R~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
|-.. |-..+.-..++-++.++-++..++++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9532 22222222345556666677777776654
No 255
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.93 E-value=0.15 Score=51.47 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=85.1
Q ss_pred CCceeccchhHH---HHHHHHhCCCC-CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHH
Q 001281 183 ERAVYGRDDDKA---KILDMVLSDDP-SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSI 258 (1108)
Q Consensus 183 ~~~~vGr~~~~~---~l~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 258 (1108)
-.++||.++.+. -|+++|..++. ++=.++-|..+|++|.|||-+|+++.+...+ .| +.|.. .+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv---p~---l~vka------t~- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV---PL---LLVKA------TE- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC---ce---EEech------HH-
Confidence 457899987765 35566654432 2234688999999999999999999997654 22 11111 11
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCC--------hhhHHHHHhhhc------cCCCCcEE
Q 001281 259 SMALLESITCKPCDLKALNEVQVQLQKAL-DGKKFLLVLDDVWNEN--------YSLWEDLKAPFL------AAAPNSKI 323 (1108)
Q Consensus 259 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~------~~~~gs~i 323 (1108)
-|-+..| +-...++++.++- +.-+|.+.+|.+.--. ..+..++..++. ..+.|...
T Consensus 187 --liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 187 --LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred --HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 1111111 1111222222222 3468999999872210 011122222222 13456666
Q ss_pred EEecCchhhhhhc-cc--cceeeCCCCChhhHHHHHHhhhc
Q 001281 324 IVTTRHSHVASTM-GS--VEHYNLSLLSDDDCWFVFMNHAF 361 (1108)
Q Consensus 324 ivTtR~~~v~~~~-~~--~~~~~l~~L~~~~~~~lf~~~~~ 361 (1108)
|-.|......+.. .. ...++...-+++|-..++...+-
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 6666655544332 11 13566666778888888877764
No 256
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.90 E-value=0.081 Score=52.82 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=60.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcC--CC------------CCccc-
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITC--KP------------CDLKA- 275 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~------------~~~~~- 275 (1108)
.+++|+|..|.|||||++.+....... .+.+++.- . +.......+-..++- +. ...-+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~~~g--~-~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQ----QGEITLDG--V-PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCC----CCEEEECC--E-EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 589999999999999999998764321 12222210 0 111110111111110 00 00111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccCCCCcEEEEecCchhhhh
Q 001281 276 LNEVQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAS 334 (1108)
Q Consensus 276 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 334 (1108)
-+...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122223455666778889999987432 22333344444433334677888888766554
No 257
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.90 E-value=0.069 Score=54.43 Aligned_cols=228 Identities=13% Similarity=0.153 Sum_probs=123.4
Q ss_pred eeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc---cccccccceeEEEEeCCC----------
Q 001281 186 VYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK---AVSDIKFDIKAWVCVSDE---------- 252 (1108)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~~f~~~~wv~~~~~---------- 252 (1108)
+.++++....+....... ..+-.-++|++|.||-|.+..+.++. .+..-.-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~~-----d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG-----DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred cccHHHHHHHHHHhcccC-----CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 667777777776665422 36788999999999999886665542 111113455666654433
Q ss_pred C-----------CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceE-EEEEeCCCCCChhhHHHHHhhhccCCCC
Q 001281 253 F-----------DVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKF-LLVLDDVWNENYSLWEDLKAPFLAAAPN 320 (1108)
Q Consensus 253 ~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~g 320 (1108)
+ .-+.+.+++++++..... + +.-..+.| ++|+-.+.+-..++...++.....-...
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~q-----------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 1 111222233332221100 0 01123445 5666666554556666777777666778
Q ss_pred cEEEEecCch-hhhhhccc-cceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch-HHHHHHHhh
Q 001281 321 SKIIVTTRHS-HVASTMGS-VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP-LAAKTLGGL 397 (1108)
Q Consensus 321 s~iivTtR~~-~v~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~ 397 (1108)
+|+|+...+. .+...... .-.+++...+++|-...+...+...+- .++ .+.+.+|+++++|.- -|+-++-+.
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l--~lp---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL--QLP---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc--cCc---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8888755431 12222211 135889999999998888777643332 111 278899999999854 444333222
Q ss_pred h-cCCC--------ChhHHHHHHhhccCCCC---CCCChhHHHHHhhhcC
Q 001281 398 L-RTKH--------GDNAWEDILNSNIWDLP---EQSGVQPVLKLSYHYL 435 (1108)
Q Consensus 398 l-~~~~--------~~~~w~~~l~~~~~~~~---~~~~i~~~l~~sy~~L 435 (1108)
- .+.+ ...+|+-.+.+....+- ....+.++-..=|+-|
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 1111 14578877665332222 1233444444445554
No 258
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0038 Score=37.40 Aligned_cols=18 Identities=39% Similarity=0.824 Sum_probs=8.2
Q ss_pred CcEEEeeCccccccchhh
Q 001281 620 LRYLNVAGTQIRSLPEST 637 (1108)
Q Consensus 620 L~~L~Ls~~~i~~lp~~i 637 (1108)
|++|++++|+++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 259
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.90 E-value=0.037 Score=58.35 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=52.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC------------Cc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSISMALLESITCKPC------------DL 273 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 273 (1108)
.-.++.|+|.+|+|||++|.+++....... .....++|++....++..++ .++++..+.... +.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 357999999999999999999874422211 01357899998887765444 334343332111 11
Q ss_pred ccHHHHHHHHHHHhC-C-ceEEEEEeCC
Q 001281 274 KALNEVQVQLQKALD-G-KKFLLVLDDV 299 (1108)
Q Consensus 274 ~~~~~~~~~l~~~l~-~-kr~LlVlDdv 299 (1108)
.+..+....+.+.+. . +.-+||+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 122223333444442 3 5668888887
No 260
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.89 E-value=0.022 Score=59.15 Aligned_cols=43 Identities=21% Similarity=0.151 Sum_probs=31.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
.-.++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~---~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG---QGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCCCCH
Confidence 3589999999999999999998865432 223567887655543
No 261
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.88 E-value=0.012 Score=56.99 Aligned_cols=92 Identities=22% Similarity=0.209 Sum_probs=59.4
Q ss_pred hhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCC--CCCCCCCCCCCccEEEecCCCCceeeCcccc
Q 001281 769 VLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNC--TSLPSLSMLGSLKQLTIKGMTRLKSIGSEFY 846 (1108)
Q Consensus 769 ~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~ 846 (1108)
.+..+..++.|..|.+.+|.+..+...+.. .+++|..|.|.+|.+. +++..+..+|.|++|.+-+|+....-. |
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~---Y 131 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN---Y 131 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccC---c
Confidence 344466677888888888888877666654 3578888888888763 456677888888888888776322211 1
Q ss_pred cCcccCcCCccceEeccc
Q 001281 847 GEDILNTFKTLETLRFEN 864 (1108)
Q Consensus 847 ~~~~~~~~~~L~~L~l~~ 864 (1108)
..-.+-.+|+|+.|++..
T Consensus 132 R~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeEEEEecCcceEeehhh
Confidence 111223455566655554
No 262
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.038 Score=63.27 Aligned_cols=187 Identities=12% Similarity=0.154 Sum_probs=107.6
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
+++||-+.-...|...+....- .+--...|+-|+||||+|+-++...-... | ....++..-..-++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri----~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI----AHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc----hhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhhh
Confidence 4679999999999988876543 34556789999999999988876432111 0 0111111111111121
Q ss_pred HH--hcCCCC---CcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hh
Q 001281 264 ES--ITCKPC---DLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HV 332 (1108)
Q Consensus 264 ~~--l~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v 332 (1108)
.. +..-.. ....+++.. .|.+.. .++-=+.|+|.|+--+...|..+...+.......+.|+.|++. .+
T Consensus 84 ~g~~~DviEiDaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred cCCcccchhhhhhhccChHHHH-HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 11 000000 011222222 222222 3455588999998777788888888777666667777777664 33
Q ss_pred hhh-ccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 333 AST-MGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
... ..-...|.+..++.++-...+...+....-..+ ++....|++..+|..
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-----~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-----EDALSLIARAAEGSL 214 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-----HHHHHHHHHHcCCCh
Confidence 322 223367899999999888877776643322111 145566777766643
No 263
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.00071 Score=65.27 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=54.3
Q ss_pred ccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCcccccccc--ccccCCCcceEecccccCCCCCcccCCCCC
Q 001281 1004 VETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSE--VIFLMNNLRYLKIENSRALKSLPQEVMGNN 1081 (1108)
Q Consensus 1004 L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~--~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l 1081 (1108)
++.++-+++.. ..+.-+-+.++++++.|.+. +|..+.+..- .....++|+.|+|++|++|++-....+..+
T Consensus 103 IeaVDAsds~I------~~eGle~L~~l~~i~~l~l~-~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 103 IEAVDASDSSI------MYEGLEHLRDLRSIKSLSLA-NCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred EEEEecCCchH------HHHHHHHHhccchhhhheec-cccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 45555555553 22333445666777777777 7766655432 222467788888888887777655556667
Q ss_pred CCccEEeeecCcCccc
Q 001281 1082 AQLEKLFIKYCDNIHR 1097 (1108)
Q Consensus 1082 ~~L~~L~l~~c~~L~~ 1097 (1108)
++|+.|+|.+-|....
T Consensus 176 knLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYVAN 191 (221)
T ss_pred hhhHHHHhcCchhhhc
Confidence 7777777777665544
No 264
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.85 E-value=0.1 Score=52.93 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC-CCChhhHHHHHhhhccC--CCCcEEEEecCchhhhhhcc
Q 001281 278 EVQVQLQKALDGKKFLLVLDDVW-NENYSLWEDLKAPFLAA--APNSKIIVTTRHSHVASTMG 337 (1108)
Q Consensus 278 ~~~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~ 337 (1108)
+-.-.+.+.+-..+-+|+.|+=- .-+...-+.+...+... ..|..||+.|-+..++..+.
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 33446778888889999999741 11223334444444432 45888999999999988654
No 265
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.84 E-value=0.13 Score=57.46 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccc
Q 001281 191 DDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVS 237 (1108)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 237 (1108)
.-.+.+.+.+...+. ....+|+|.|.=|+||||+.+.+.+.....
T Consensus 3 ~~a~~la~~I~~~~~--~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDS--DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCC--CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566677765431 347899999999999999999988766543
No 266
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.83 E-value=0.025 Score=60.91 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=47.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF-DVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
+.+++.++|++|+||||++..++.....+. .-..+..|+..... ...+.+....+.++.+.....+..++...+.+ +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-L 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-c
Confidence 357999999999999999988877543220 01235555544321 12233333344444433222333444444433 3
Q ss_pred CCceEEEEEeCC
Q 001281 288 DGKKFLLVLDDV 299 (1108)
Q Consensus 288 ~~kr~LlVlDdv 299 (1108)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777754
No 267
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.82 E-value=0.068 Score=60.74 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=47.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCC---cccHHHHHHHHH
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE-FDVLSISMALLESITCKPCD---LKALNEVQVQLQ 284 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 284 (1108)
.+.+|.++|..|+||||+|..++......+ + .+..|++... ....+.++.+.+.++.+... ..+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g--~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG--L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC--C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 468999999999999999998887554322 2 3334443321 12244455566666543221 122222222222
Q ss_pred HHhCCceEEEEEeCC
Q 001281 285 KALDGKKFLLVLDDV 299 (1108)
Q Consensus 285 ~~l~~kr~LlVlDdv 299 (1108)
+.+.+. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 233333 46777776
No 268
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.81 E-value=0.078 Score=52.40 Aligned_cols=106 Identities=19% Similarity=0.133 Sum_probs=56.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccc--cccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSD--IKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
.+++|+|+.|.|||||++.+..-..... ..++..-...+.+... ...-+...-.+.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~laral~ 87 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAALL 87 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHHHh
Confidence 5999999999999999999987543211 0121110001111111 1111222334566667
Q ss_pred CceEEEEEeCCCCC-ChhhHHHHHhhhccC--CCCcEEEEecCchhhhh
Q 001281 289 GKKFLLVLDDVWNE-NYSLWEDLKAPFLAA--APNSKIIVTTRHSHVAS 334 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~ 334 (1108)
.++-++++|+--.. +....+.+...+... ..+..||++|.+.....
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 77889999987332 223333344444322 22356777776655443
No 269
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.065 Score=59.50 Aligned_cols=130 Identities=19% Similarity=0.225 Sum_probs=75.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
..+..+.+.|++|+|||+||..++..- .|..+--++-..- +|.. +......+........
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~m-------------iG~s--EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDM-------------IGLS--ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHc-------------cCcc--HHHHHHHHHHHHHHhh
Confidence 457788899999999999999998753 4654433321111 1110 1112233334445555
Q ss_pred CCceEEEEEeCCCCCChhhH------------HHHHhhhc---cCCCCcEEEEecCchhhhhhcccc----ceeeCCCCC
Q 001281 288 DGKKFLLVLDDVWNENYSLW------------EDLKAPFL---AAAPNSKIIVTTRHSHVASTMGSV----EHYNLSLLS 348 (1108)
Q Consensus 288 ~~kr~LlVlDdv~~~~~~~~------------~~l~~~l~---~~~~gs~iivTtR~~~v~~~~~~~----~~~~l~~L~ 348 (1108)
+..=-.||+||+ +..-+| ..+...+. +.+..--|+-||-...+...|+-. ..|.++.++
T Consensus 596 kS~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 677789999998 222223 22222232 223333344466667788777632 568888887
Q ss_pred h-hhHHHHHHhh
Q 001281 349 D-DDCWFVFMNH 359 (1108)
Q Consensus 349 ~-~~~~~lf~~~ 359 (1108)
. ++..+.++..
T Consensus 674 ~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 674 TGEQLLEVLEEL 685 (744)
T ss_pred chHHHHHHHHHc
Confidence 7 5666666544
No 270
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.80 E-value=0.07 Score=52.69 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=61.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc-cc--cc--cccc--eeEEEEeCCCCCHHHHHHHHHHHhcCCCC--C----cccH-
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK-AV--SD--IKFD--IKAWVCVSDEFDVLSISMALLESITCKPC--D----LKAL- 276 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~-~~--~~--~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~----~~~~- 276 (1108)
.+++|+|+.|+|||||.+.+..+. .+ .. ..+. .+.|+ .+ .+.++.++.... + ..+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 689999999999999999886321 11 00 0000 12222 11 345566654321 1 1111
Q ss_pred HHHHHHHHHHhCCc--eEEEEEeCCCCC-ChhhHHHHHhhhccC-CCCcEEEEecCchhhhh
Q 001281 277 NEVQVQLQKALDGK--KFLLVLDDVWNE-NYSLWEDLKAPFLAA-APNSKIIVTTRHSHVAS 334 (1108)
Q Consensus 277 ~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 334 (1108)
+...-.+.+.+-.+ +=++++|+--.. +....+.+...+... ..|..||++|.+.....
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22223455556566 778888986332 233344444444332 24677888888766553
No 271
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.80 E-value=0.031 Score=58.45 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=52.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC---------CcccH
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSISMALLESITCKPC---------DLKAL 276 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 276 (1108)
.-.++.|+|.+|+|||++|.+++......+ ..-..++|++....++...+. .+....+.... ...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 357999999999999999998876432110 011567899887777655443 33333221100 11233
Q ss_pred HHHHHHHHHHh----CCceEEEEEeCC
Q 001281 277 NEVQVQLQKAL----DGKKFLLVLDDV 299 (1108)
Q Consensus 277 ~~~~~~l~~~l----~~kr~LlVlDdv 299 (1108)
+++...+.+.. ..+.-++|+|.+
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 44444444333 234568899987
No 272
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.75 E-value=0.034 Score=59.05 Aligned_cols=41 Identities=34% Similarity=0.566 Sum_probs=33.6
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHH
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREV 230 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v 230 (1108)
.+-+|..+..--+++|+.++ +..|.+.|.+|.|||-||-+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~d-----I~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDD-----IDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred ccCcccHHHHHHHHHhcCCC-----CCeEEeeccCCccHhHHHHHH
Confidence 45667777777788888775 789999999999999998544
No 273
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.74 E-value=0.026 Score=59.72 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=40.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcccc---ccccceeEEEEeCCCCCHHHHHHHHHHHhc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVS---DIKFDIKAWVCVSDEFDVLSISMALLESIT 267 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 267 (1108)
-.+.-|+|.+|+|||.|+.+++-..... +..-..++|++-...|+..++. +|++..+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4689999999999999998776443221 1023468999999999887765 4566543
No 274
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.73 E-value=0.01 Score=56.40 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=61.3
Q ss_pred eccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 001281 187 YGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESI 266 (1108)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 266 (1108)
||+-..+.++.+.+..-.. ...-|.|+|..|+||+++|+.++.........|..+ .+... .
T Consensus 1 vG~S~~~~~l~~~l~~~a~---~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK---SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC---SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C------------
T ss_pred CCCCHHHHHHHHHHHHHhC---CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c------------
Confidence 4555566666655543211 124578999999999999999887643221122110 00000 0
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccC-CCCcEEEEecCc
Q 001281 267 TCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAA-APNSKIIVTTRH 329 (1108)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 329 (1108)
.+.+.+ .+.--|+++|+..-+.+....+...+... ....|+|.||+.
T Consensus 62 -------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 -------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp -------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred -------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111111 14445789999766666677777777643 577899999985
No 275
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.054 Score=64.74 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=82.2
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc---ccccccceeEEEEeCCCCCHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKA---VSDIKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
..++||++|+.++++.|.....++ + .++|.+|||||++|.-++.+-- +...--+..++ ++ +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN---P--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~-sL----D------ 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN---P--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY-SL----D------ 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC---C--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE-Ee----c------
Confidence 468999999999999998654322 1 4689999999999866655321 11100011111 00 0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCC---------ChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKAL-DGKKFLLVLDDVWNE---------NYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
+..-+.+.. -.-+.++....+.+.+ +.++..|++|.++.- ..+.-.-+..++. .+. -++|-.|...
T Consensus 234 -~g~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGe-L~~IGATT~~ 309 (786)
T COG0542 234 -LGSLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGE-LRCIGATTLD 309 (786)
T ss_pred -HHHHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCC-eEEEEeccHH
Confidence 111111111 1123344444444434 345899999998431 1112222222222 222 3444444432
Q ss_pred hhhhhc-------cccceeeCCCCChhhHHHHHHhhh
Q 001281 331 HVASTM-------GSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 331 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
+.-..+ .-...+.|...+.+++...++...
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 222222 223678899999999988886543
No 276
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.086 Score=52.22 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC--CCCHHHHHHHHHHHhcC--CCC---Cc------cc-H
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD--EFDVLSISMALLESITC--KPC---DL------KA-L 276 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~---~~------~~-~ 276 (1108)
.+++|+|+.|.|||||.+.++.-... ..+.+++.-.. ....... ...++. +.. .. -+ -
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDP----TSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC----CCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 58999999999999999999876432 12222221100 0011111 111110 000 00 11 1
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccCCCCcEEEEecCchhhhhh
Q 001281 277 NEVQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAST 335 (1108)
Q Consensus 277 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 335 (1108)
+...-.+.+.+-.++-++++|+-... +....+.+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11222355666678889999987432 223344444444433335678888887665543
No 277
>PTZ00494 tuzin-like protein; Provisional
Probab=95.67 E-value=0.29 Score=53.67 Aligned_cols=169 Identities=12% Similarity=0.162 Sum_probs=103.8
Q ss_pred CccccCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHH
Q 001281 178 SSVRTERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLS 257 (1108)
Q Consensus 178 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 257 (1108)
..+.....+|.|+++-..+.+.|.+.+. ..++++.+.|.-|.||++|.+........ ..++|.+.... +
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld~--aHPRIvV~TG~~GcGKSslcRsAvrkE~~------paV~VDVRg~E---D 433 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMAP--SHPRIVALAGGSGGGRCVPCRRAVRVEGV------ALVHVDVGGTE---D 433 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhccC--CCCcEEEEecCCCCCchHHHHHHHHHcCC------CeEEEEecCCc---c
Confidence 3445567899999999999888876653 45899999999999999999988876433 35677776654 4
Q ss_pred HHHHHHHHhcCCCCCc--ccHH---HHHHHHHHHhCCceEEEEEe--CCCCCChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 258 ISMALLESITCKPCDL--KALN---EVQVQLQKALDGKKFLLVLD--DVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 258 ~~~~i~~~l~~~~~~~--~~~~---~~~~~l~~~l~~kr~LlVlD--dv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
.++.+.+.++.+..+. +-++ +.-..-.....++.=+||+- +-.+- ...+.+ ...+.....-|+|++---.+
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL-~RVYnE-~vaLacDrRlCHvv~EVplE 511 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDL-GRVYGE-VVSLVSDCQACHIVLAVPMK 511 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcH-HHHHHH-HHHHHccchhheeeeechHh
Confidence 5778889998875432 1122 22222223345555555542 22110 011212 12233344567888755433
Q ss_pred hhhhhc---cccceeeCCCCChhhHHHHHHhh
Q 001281 331 HVASTM---GSVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 331 ~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
.+.-.. .-..-|.++.++.++|.++-.+.
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 322111 11246889999999998876554
No 278
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.65 E-value=0.16 Score=50.04 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccc--cccce---eEEEEeCCCCCHHHHHHHHHHHhcC-CCCCcccHHHHHHHHH
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSD--IKFDI---KAWVCVSDEFDVLSISMALLESITC-KPCDLKALNEVQVQLQ 284 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~---~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l~ 284 (1108)
.+++|+|..|.|||||++.+........ ..++. +.++ .+...... ..+.+.+.. .......-+...-.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~--~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPL--GTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCcccc--ccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 5899999999999999999987643211 01111 2222 22221110 122222211 1112222233334456
Q ss_pred HHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccCCCCcEEEEecCchhhh
Q 001281 285 KALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAAAPNSKIIVTTRHSHVA 333 (1108)
Q Consensus 285 ~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 333 (1108)
+.+-.++=++++|+--.. +......+...+... +..||++|.+....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 666677888899986321 223334444444433 35677777766554
No 279
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.03 Score=58.23 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=47.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccc-cccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSD-IKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
-|+|-++|++|.|||+|.+++++...++. ..+....-+.++. ..++.....+ ...-+..+..++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 48899999999999999999999876542 0232223333322 1222222211 12234555666777776
Q ss_pred Cce--EEEEEeCC
Q 001281 289 GKK--FLLVLDDV 299 (1108)
Q Consensus 289 ~kr--~LlVlDdv 299 (1108)
++. +++.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 654 44557888
No 280
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.22 Score=59.19 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=98.7
Q ss_pred CCceeccch---hHHHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDD---DKAKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~---~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.++.|-++ |+.+++++|..++. +..-++=|-++|++|.|||-||++++-...+ .| ++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV---PF-----~svSGS--- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PF-----FSVSGS--- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC---ce-----eeechH---
Confidence 346788765 45566666655421 2344677889999999999999999987654 22 333321
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHhCCceEEEEEeCCCCC---------------ChhhHHHHHhhhccCCC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQ-KALDGKKFLLVLDDVWNE---------------NYSLWEDLKAPFLAAAP 319 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~---------------~~~~~~~l~~~l~~~~~ 319 (1108)
+.++.+.... . ...+.+. ..=...++.|.+|++... ......++..-+.....
T Consensus 379 -----EFvE~~~g~~--a----srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 -----EFVEMFVGVG--A----SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred -----HHHHHhcccc--h----HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 1111111110 1 1112222 222456888888876221 01123334333333333
Q ss_pred CcEE--EEecCchhhhhhc-----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHH
Q 001281 320 NSKI--IVTTRHSHVASTM-----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLA 390 (1108)
Q Consensus 320 gs~i--ivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 390 (1108)
+..| |-+|...++.... .-++.+.++.-+.....++|..++.......+.. ++.+ |+...-|.+=|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~----dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDV----DLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchh----hHHH-HHhcCCCCcHH
Confidence 3333 3355554444321 1235678888888888889988875444332333 4444 88877777644
No 281
>PRK06696 uridine kinase; Validated
Probab=95.64 E-value=0.013 Score=60.92 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=35.5
Q ss_pred ccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 188 GRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~--~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLN--LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhC--CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 36667778888776532 2347899999999999999999998754
No 282
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.1 Score=53.91 Aligned_cols=120 Identities=22% Similarity=0.221 Sum_probs=66.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccc-cc-cc-c----------ceeEEEEeCCCC------CHH---------------
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAV-SD-IK-F----------DIKAWVCVSDEF------DVL--------------- 256 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~-~~-f----------~~~~wv~~~~~~------~~~--------------- 256 (1108)
.+++|+|+.|.|||||.+.+.--... ++ .. | ..+.||.-...+ ++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 69999999999999999999873221 10 00 1 235555321111 111
Q ss_pred -------HHHHHHHHHhcCCCC-----CcccHHHHH-HHHHHHhCCceEEEEEeCCC----CCChhhHHHHHhhhccCCC
Q 001281 257 -------SISMALLESITCKPC-----DLKALNEVQ-VQLQKALDGKKFLLVLDDVW----NENYSLWEDLKAPFLAAAP 319 (1108)
Q Consensus 257 -------~~~~~i~~~l~~~~~-----~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~----~~~~~~~~~l~~~l~~~~~ 319 (1108)
+...+.++.++...- ..-+-.+.+ ..+.+.|.+++=|++||.-. .........+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 333444444443211 111222333 34677888999999999742 22223333444444433
Q ss_pred CcEEEEecCchhh
Q 001281 320 NSKIIVTTRHSHV 332 (1108)
Q Consensus 320 gs~iivTtR~~~v 332 (1108)
|..||++|-+-..
T Consensus 189 g~tIl~vtHDL~~ 201 (254)
T COG1121 189 GKTVLMVTHDLGL 201 (254)
T ss_pred CCEEEEEeCCcHH
Confidence 8889998887543
No 283
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.079 Score=59.16 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccc-cccceeEEEEeCCCCC--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSD-IKFDIKAWVCVSDEFD--VLSISMALLESITCKPCDLKALNEVQVQLQKA 286 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 286 (1108)
.++|.++|+.|+||||.+..++....... ..-..+..+++. .+. ...-++...+.++.+-......+++...+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 57999999999999999988876543211 011234555554 332 22335555565655433333445554444443
Q ss_pred hCCceEEEEEeCCCCCCh--hhHHHHHhhhcc
Q 001281 287 LDGKKFLLVLDDVWNENY--SLWEDLKAPFLA 316 (1108)
Q Consensus 287 l~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~ 316 (1108)
.+.-+|++|.+..... .....+...+..
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3456888998844321 233444444443
No 284
>PRK13695 putative NTPase; Provisional
Probab=95.58 E-value=0.011 Score=58.98 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-++|+|.+|+|||||++.++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987754
No 285
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.58 E-value=0.012 Score=59.51 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh---
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKAL--- 287 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 287 (1108)
+++.|.|++|.||||+++.+.......+ ..+.+..... .....+.+..+.. ...+..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g----~~v~~~apT~----~Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG----KRVIGLAPTN----KAAKELREKTGIE---AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSH----HHHHHHHHHHTS----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC----CeEEEECCcH----HHHHHHHHhhCcc---hhhHHHHHhcCCcccccc
Confidence 6888999999999999998876543321 2233322222 1222233333211 111111110000000
Q ss_pred ---CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc
Q 001281 288 ---DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH 329 (1108)
Q Consensus 288 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 329 (1108)
..++-+||+|++...+...+..+...... .|+|+|+.--.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12345999999976666666666655543 57788876543
No 286
>PHA02244 ATPase-like protein
Probab=95.58 E-value=0.15 Score=55.77 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-|.|+|+.|+|||++|++++...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998753
No 287
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.56 E-value=0.059 Score=52.82 Aligned_cols=115 Identities=18% Similarity=0.095 Sum_probs=61.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC--CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD--EFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
.+++|+|..|.|||||.+.++..... ..+.+++.-.. ..+..+..+ ..++... +...-+...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP----DSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHh
Confidence 58999999999999999999876432 23334432111 111111111 1111100 11112222334566667
Q ss_pred CceEEEEEeCCCCC-ChhhHHHHHhhhccC-CCCcEEEEecCchhhh
Q 001281 289 GKKFLLVLDDVWNE-NYSLWEDLKAPFLAA-APNSKIIVTTRHSHVA 333 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~ 333 (1108)
.++-++++|+--.. +....+.+...+... ..|..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 77888999987332 233444455544432 3466788888776543
No 288
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.56 E-value=0.021 Score=61.71 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=52.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQL 283 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 283 (1108)
.-+++-|+|++|+||||||.+++..... .-..++||+..+.++.. .++.++.... ...+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 3579999999999999999988765432 23467899887776653 2334433211 112344444444
Q ss_pred HHHhC-CceEEEEEeCC
Q 001281 284 QKALD-GKKFLLVLDDV 299 (1108)
Q Consensus 284 ~~~l~-~kr~LlVlDdv 299 (1108)
....+ +..-+||+|.|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 44443 45679999997
No 289
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.07 Score=59.35 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999988643
No 290
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.53 E-value=0.039 Score=59.99 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=41.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCcccc---ccccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVS---DIKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
.-+++-|+|++|+|||+++.+++-..... +..-..++||+....|+..++. ++++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 35799999999999999998766432211 0022468999999988888765 45566554
No 291
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.51 E-value=0.22 Score=49.31 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=67.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeC-------------------CCCC----------------
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVS-------------------DEFD---------------- 254 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------------------~~~~---------------- 254 (1108)
-.|++|+|++|.|||||.+.+..=.... .+.+||.-. +.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~----~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD----SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC----CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 3699999999999999999887643322 234444210 1111
Q ss_pred ---------HHHHHHHHHHHhcCCCC------CcccHHHHHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhcc-C
Q 001281 255 ---------VLSISMALLESITCKPC------DLKALNEVQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLA-A 317 (1108)
Q Consensus 255 ---------~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~ 317 (1108)
..+...++++.++.... ....-++-.-.|.+.|.=++=++.||..-+. +++...++...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 22333344444443211 1111223334577788888889999998442 33444444444443 3
Q ss_pred CCCcEEEEecCchhhhhhc
Q 001281 318 APNSKIIVTTRHSHVASTM 336 (1108)
Q Consensus 318 ~~gs~iivTtR~~~v~~~~ 336 (1108)
..|-.+|+.|-....|..+
T Consensus 184 ~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HcCCeEEEEechhHHHHHh
Confidence 4565666666655555443
No 292
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.47 E-value=0.13 Score=53.20 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=73.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccc--cccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC------CcccHHHHH-
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSD--IKFDIKAWVCVSDEFDVLSISMALLESITCKPC------DLKALNEVQ- 280 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~- 280 (1108)
-.+++|+|.+|.||||+|+.+..=..... ..|+..-+...+ .....+...++++.++.... ..-+-.+.+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 36899999999999999999987544211 122221111111 22234456667777765432 111112222
Q ss_pred HHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhcc--CCCCcEEEEecCchhhhhhccc
Q 001281 281 VQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLA--AAPNSKIIVTTRHSHVASTMGS 338 (1108)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~~ 338 (1108)
-.+.+.|.-++-++|.|..-+. +...-+++...+.. ...|-..++.|-+-.++..+..
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3467788889999999986321 11122333333332 3456778888888777776643
No 293
>PRK08233 hypothetical protein; Provisional
Probab=95.45 E-value=0.043 Score=55.13 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999998754
No 294
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.41 E-value=0.047 Score=57.35 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCcccHH-----
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD-VLSISMALLESITCK-------PCDLKALN----- 277 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 277 (1108)
.-++|.|..|+||||||+.+++..... +-+.++++-+++... +.++...+.+.=... ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 568999999999999999999875431 234566777776654 445555554321110 11111111
Q ss_pred HHHHHHHHHh---CCceEEEEEeCC
Q 001281 278 EVQVQLQKAL---DGKKFLLVLDDV 299 (1108)
Q Consensus 278 ~~~~~l~~~l---~~kr~LlVlDdv 299 (1108)
...-.+.+++ .++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223345555 389999999999
No 295
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.41 E-value=0.026 Score=57.31 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=57.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVL-SISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
.+|.|+|+.|.||||++..+...... .....+++ +..+.... .-...+..+-. .. .+.......++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~---~~~~~i~t-~e~~~E~~~~~~~~~i~q~~---vg-~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK---NKTHHILT-IEDPIEFVHESKRSLINQRE---VG-LDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh---cCCcEEEE-EcCCccccccCccceeeecc---cC-CCccCHHHHHHHHhcC
Confidence 47899999999999999987765321 22233332 22211100 00000111100 00 1112344556777777
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhh
Q 001281 290 KKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVA 333 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 333 (1108)
.+=.|++|++.+. +.+..+... ...|..|+.|+-...+.
T Consensus 74 ~pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 7889999999543 444433332 23466677777655444
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.38 E-value=0.044 Score=52.49 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999864
No 297
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0086 Score=35.83 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=18.6
Q ss_pred cccEEEecCccccccCcchhcC
Q 001281 596 KLRVLSLEGYYVTQLPNSIKEL 617 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~~i~~l 617 (1108)
+|++|||++|.++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887653
No 298
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.34 E-value=0.018 Score=59.48 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001281 213 IPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
|.|+|++|+||||+|+.+....
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998754
No 299
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.33 E-value=0.032 Score=60.27 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=52.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQL 283 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 283 (1108)
.-+++-|+|++|+||||||.++...... .-..++|++..+.++.. .++.++.... +....++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3579999999999999999887765432 23457788877766553 3444443211 122344444444
Q ss_pred HHHhC-CceEEEEEeCC
Q 001281 284 QKALD-GKKFLLVLDDV 299 (1108)
Q Consensus 284 ~~~l~-~kr~LlVlDdv 299 (1108)
....+ +..-+||+|.|
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 44443 45679999998
No 300
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.33 E-value=0.007 Score=61.29 Aligned_cols=61 Identities=25% Similarity=0.254 Sum_probs=44.9
Q ss_pred hcCCCCcEEEeeCccccccchhhhcCccCcEeeecCC--cCCcccchhccCCCCccEEeecCCC
Q 001281 615 KELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDC--SRLTRLPSKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 615 ~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~--~~~~~lp~~i~~L~~L~~L~l~~~~ 676 (1108)
-.+..|++|++.+..++++ ..+-.|++|++|+++.| .....++.-..++++|++|++++|+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3455666666766666544 23446889999999998 5556666666778999999999997
No 301
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.099 Score=57.85 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=50.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD-EFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
..++.++|+.|+||||++..+......+. ....+..++... .....+-++...+.++.+.....+..++...+. .+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 36999999999999999999887542211 112455555432 223445555566666654332223233333333 344
Q ss_pred CceEEEEEeCCCC
Q 001281 289 GKKFLLVLDDVWN 301 (1108)
Q Consensus 289 ~kr~LlVlDdv~~ 301 (1108)
++ -+|++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 5566998843
No 302
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0023 Score=64.67 Aligned_cols=81 Identities=28% Similarity=0.288 Sum_probs=66.3
Q ss_pred hccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccc--hhhhcCccCcEeeecCCcCCcccch-----hcc
Q 001281 590 MLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLP--ESTSSLMHLRVLILRDCSRLTRLPS-----KMW 662 (1108)
Q Consensus 590 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~-----~i~ 662 (1108)
.+.+++.|+||.|+-|.|+.+. .+..+++|+.|.|+.|.|..+- .-+.+|++|++|.|..|.-...-+. .+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 4678999999999999999883 4789999999999999998774 3568999999999998765544443 255
Q ss_pred CCCCccEEe
Q 001281 663 NLINLRHLD 671 (1108)
Q Consensus 663 ~L~~L~~L~ 671 (1108)
-|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 688888886
No 303
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.27 E-value=0.087 Score=55.36 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=52.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC----------------- 271 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 271 (1108)
.-.++.|+|.+|+|||++|.++...... .-..++|++..+.+ .++.+.+ ++++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 3579999999999999999998654211 23467888886543 4444443 22221100
Q ss_pred ---CcccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 001281 272 ---DLKALNEVQVQLQKALDG-KKFLLVLDDVW 300 (1108)
Q Consensus 272 ---~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 300 (1108)
.....+++...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 011234555556666643 55689999973
No 304
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.43 Score=55.11 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=36.7
Q ss_pred CceeccchhHHHHHHHHhCCC--------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 184 RAVYGRDDDKAKILDMVLSDD--------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.++-|.++-+.++.+...-+- -+-...+-|-.+|++|.|||++|+++.+...
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~ 493 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG 493 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc
Confidence 456667777777665543221 1224568889999999999999999998654
No 305
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.072 Score=52.62 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998754
No 306
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.21 E-value=0.041 Score=55.68 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.++|.|+|++|+||||+|+.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999864
No 307
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.016 Score=54.00 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVS 237 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~ 237 (1108)
.-|.|.|++|+||||+++.+.+..+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 568999999999999999999766544
No 308
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.18 E-value=0.073 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998753
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=95.14 E-value=0.13 Score=56.22 Aligned_cols=100 Identities=19% Similarity=0.120 Sum_probs=51.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC--HHHHHHHHHHHhcCCCC---CcccHHH-HHHH
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD--VLSISMALLESITCKPC---DLKALNE-VQVQ 282 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~ 282 (1108)
+..+|.++|+.|+||||++..++...... .+ .++.+.. ..+. ..+-++.....++.+.. ...+... ....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 36899999999999999888777644322 22 2333432 2222 23344556666664321 1112222 2222
Q ss_pred HHHHhCCceEEEEEeCCCCC--ChhhHHHHHh
Q 001281 283 LQKALDGKKFLLVLDDVWNE--NYSLWEDLKA 312 (1108)
Q Consensus 283 l~~~l~~kr~LlVlDdv~~~--~~~~~~~l~~ 312 (1108)
+........-+|++|-+... +...++++..
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~ 246 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTDANLMDELKK 246 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCcHHHHHHHHH
Confidence 33222222338999988543 2233444433
No 310
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.18 Score=49.96 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcC--CCC---Cc--------ccHH
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITC--KPC---DL--------KALN 277 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~---~~--------~~~~ 277 (1108)
.+++|+|..|.|||||++.++..... ..+.+++.-....+.. ..+...++. +.. .. -+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKP----DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 58999999999999999999876432 1223332110000000 011111110 000 00 1111
Q ss_pred H-HHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccC-CCCcEEEEecCchhhhh
Q 001281 278 E-VQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAA-APNSKIIVTTRHSHVAS 334 (1108)
Q Consensus 278 ~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 334 (1108)
+ ..-.+.+.+..++=++++|+--.. +....+.+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2 223466677788889999987332 223334444444332 23677888888766544
No 311
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.034 Score=55.70 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.++.+|+|.|.+|.||||+|+.++....
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3468999999999999999999998543
No 312
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.10 E-value=0.15 Score=50.52 Aligned_cols=116 Identities=23% Similarity=0.265 Sum_probs=58.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC--CCCHHHHHHHHHHHhcCCCCC------------cccH
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD--EFDVLSISMALLESITCKPCD------------LKAL 276 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~------------~~~~ 276 (1108)
.+++|+|..|.|||||.+.+...... ..+.+++.-.. ....... ...++.-..+ ...-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRP----TSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC----CCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 58999999999999999999875432 11222221000 0111111 1111110000 0111
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccC-CCCcEEEEecCchhhhh
Q 001281 277 NEVQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAA-APNSKIIVTTRHSHVAS 334 (1108)
Q Consensus 277 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 334 (1108)
+...-.+.+.+-.++=++++|+-... +......+...+... ..|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 12223455666677779999987332 223333444444322 24667888887766554
No 313
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.17 Score=55.34 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=54.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF-DVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
+.+++.++|+.|+||||++..++.....+ -..+.+|+..... ...+-++...+.++.+.....+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~---g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 46899999999999999998888654221 1245666664322 2344455566666544322334455554444332
Q ss_pred -CCceEEEEEeCCCC
Q 001281 288 -DGKKFLLVLDDVWN 301 (1108)
Q Consensus 288 -~~kr~LlVlDdv~~ 301 (1108)
.+..-+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456888898744
No 314
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.08 E-value=0.11 Score=50.32 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=61.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcccccccccee--EEEEeCCCCCHHHHHHHHHH---HhcCC----CCCcc-c---H
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIK--AWVCVSDEFDVLSISMALLE---SITCK----PCDLK-A---L 276 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~i~~---~l~~~----~~~~~-~---~ 276 (1108)
...|-|++..|.||||.|..+.-+....+ +... -|+--.........+..+.- +.+.. ..+.. + .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g--~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG--KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC--CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788888899999999976655432211 2111 12222212233333333200 00110 00111 1 1
Q ss_pred HHHHHHHHHHhCC-ceEEEEEeCCCC---CChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 277 NEVQVQLQKALDG-KKFLLVLDDVWN---ENYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 277 ~~~~~~l~~~l~~-kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
.+.....++.+.. +--+||||.+-. -..-..+++...+.....+..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2222334445544 445999999821 11234556777777777788999999974
No 315
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.06 E-value=0.09 Score=55.49 Aligned_cols=88 Identities=24% Similarity=0.183 Sum_probs=56.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHH-hcC---C-CCCcccHHHHHHH
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLES-ITC---K-PCDLKALNEVQVQ 282 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~---~-~~~~~~~~~~~~~ 282 (1108)
..-+++-|+|+.|.||||+|.+++-.... .-..++|++....+++..+.. +... +.. . +.....-.+....
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~---~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQK---PGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhc---CCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 34689999999999999999888766543 234789999999998876543 3333 211 1 1111222233344
Q ss_pred HHHHhCCceEEEEEeCC
Q 001281 283 LQKALDGKKFLLVLDDV 299 (1108)
Q Consensus 283 l~~~l~~kr~LlVlDdv 299 (1108)
+.+....+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444445678899988
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.04 E-value=0.066 Score=55.26 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 317
>PRK09354 recA recombinase A; Provisional
Probab=95.04 E-value=0.047 Score=59.55 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=53.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQL 283 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 283 (1108)
.-+++-|+|++|+||||||.+++..... .-..++||+..+.++.. .++.++.... .....++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3579999999999999999888765432 23567899888877753 3444443211 122344444444
Q ss_pred HHHhC-CceEEEEEeCC
Q 001281 284 QKALD-GKKFLLVLDDV 299 (1108)
Q Consensus 284 ~~~l~-~kr~LlVlDdv 299 (1108)
...++ +..-+||+|.|
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 44443 45679999998
No 318
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.04 E-value=0.22 Score=53.77 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=35.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLES 265 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 265 (1108)
-.++.|.|.+|+||||++.+++...... +-..++|+++... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcccC--HHHHHHHHHHH
Confidence 3588899999999999999887764321 1345788887663 44555555444
No 319
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.02 E-value=0.12 Score=59.02 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=47.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc-ccccccceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA-VSDIKFDIKAWVCVSDEF-DVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
.+++.++|++|+||||++..+..... .. ....+..|+..... ...+-++...+.++.+.....+..++...+.+ +
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~ 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-L 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-h
Confidence 36999999999999999887765443 11 12345566654321 11222333344444433222333444444443 2
Q ss_pred CCceEEEEEeCCC
Q 001281 288 DGKKFLLVLDDVW 300 (1108)
Q Consensus 288 ~~kr~LlVlDdv~ 300 (1108)
. ..=+|++|..-
T Consensus 298 ~-~~DlVlIDt~G 309 (424)
T PRK05703 298 R-DCDVILIDTAG 309 (424)
T ss_pred C-CCCEEEEeCCC
Confidence 3 35678889763
No 320
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.02 E-value=0.082 Score=57.96 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=41.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCcccc---ccccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVS---DIKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
.-.++-|+|.+|+|||+|+..++-..... +..-..++||+....|+..++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 35788999999999999998876432211 10234789999999999887654 5565554
No 321
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.01 E-value=0.089 Score=51.55 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=65.6
Q ss_pred eeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 001281 186 VYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLES 265 (1108)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 265 (1108)
+||....+.++++.+..-... . .-|.|+|..|+||+.+|+.+++.-..+. ..-+-|+++.- +...+-.++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~--~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~---~pfi~vnc~~~-~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS--D-LPVLITGETGTGKELLARAIHNNSPRKN---GPFISVNCAAL-PEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS--T-S-EEEECSTTSSHHHHHHHHHHCSTTTT---S-EEEEETTTS--HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCC--C-CCEEEEcCCCCcHHHHHHHHHHhhhccc---CCeEEEehhhh-hcchhhhhhhcc
Confidence 367777777777766543221 1 3455999999999999999998532211 12233444422 333333333322
Q ss_pred hcCCCCC--cccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccC-----------CCCcEEEEecCc
Q 001281 266 ITCKPCD--LKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAA-----------APNSKIIVTTRH 329 (1108)
Q Consensus 266 l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 329 (1108)
-.....+ ..... .+.+ ...=-|+||++..-.......+...+..+ ....|||.||..
T Consensus 74 ~~~~~~~~~~~~~G----~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDKKG----LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEBEH----HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccCC----ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 1111011 11111 1111 23446889999666555555666555432 125788988875
No 322
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.28 Score=58.06 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=83.7
Q ss_pred ceeccchhHHHHHHHH---hCCCC-----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHH
Q 001281 185 AVYGRDDDKAKILDMV---LSDDP-----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVL 256 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L---~~~~~-----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 256 (1108)
++.|.+...+.+.+.. +.... +-...+.+-++|++|.|||.||+++++..+. .|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~---~fi~v~~-----~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS---RFISVKG-----S---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC---eEEEeeC-----H----
Confidence 4556665555444432 22111 2244668999999999999999999995433 3432221 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCC-----CCh------hhHHHHHhhhccC--CCCcEE
Q 001281 257 SISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWN-----ENY------SLWEDLKAPFLAA--APNSKI 323 (1108)
Q Consensus 257 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-----~~~------~~~~~l~~~l~~~--~~gs~i 323 (1108)
.+ +... -......+...+....+..++.|.+|++.. ... ....++...+... ..+..|
T Consensus 311 ~l----~sk~-----vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 EL----LSKW-----VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred HH----hccc-----cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 11 1000 001122223333444467899999999822 100 1222333333222 233344
Q ss_pred EEecCchhhhhhc-----cccceeeCCCCChhhHHHHHHhhhcC
Q 001281 324 IVTTRHSHVASTM-----GSVEHYNLSLLSDDDCWFVFMNHAFY 362 (1108)
Q Consensus 324 ivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~ 362 (1108)
|-||-........ .-...+.+..-+.++..+.|+.+...
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 5555443332211 12356888888889999999888753
No 323
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.99 E-value=1.4 Score=47.71 Aligned_cols=156 Identities=8% Similarity=0.063 Sum_probs=88.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc--------cccccccceeEEEEe-CCCCCHHHHHHHHHHHhcCCCCCcccHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK--------AVSDIKFDIKAWVCV-SDEFDVLSISMALLESITCKPCDLKALNEVQ 280 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 280 (1108)
.++.-++|..|.||+++|..+.+.. .... +.+...++.. +....++++. ++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~-~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE-LPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC-CCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 4677799999999999998876653 1111 2212222221 1111221111 2222221110
Q ss_pred HHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhhhhhc-cccceeeCCCCChhhHHHHHHh
Q 001281 281 VQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHVASTM-GSVEHYNLSLLSDDDCWFVFMN 358 (1108)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 358 (1108)
.-.+++=++|+|++..-+......+...+......+.+|++|.+ ..+.... .....+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 01146778889998666556677788888777777777766644 3333332 2236789999999998877765
Q ss_pred hhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 359 HAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
.. .. + +.+..++...+|.=-|+..
T Consensus 161 ~~--~~-----~----~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 KN--KE-----K----EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred cC--CC-----h----hHHHHHHHHcCCHHHHHHH
Confidence 41 11 1 4456666666763345544
No 324
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.99 E-value=0.16 Score=51.85 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc--cc-cc-cccce---------------eEEEEeCCCCCH--HHHHHHHHHHhcCC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK--AV-SD-IKFDI---------------KAWVCVSDEFDV--LSISMALLESITCK 269 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~--~~-~~-~~f~~---------------~~wv~~~~~~~~--~~~~~~i~~~l~~~ 269 (1108)
.+++|+|..|.|||||.+.+.... .. .+ ..|+. +.++ .+.+.. .....+++...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~~--- 101 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRYV--- 101 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhhc---
Confidence 699999999999999999988752 11 11 01111 1111 111110 00111111111
Q ss_pred CCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccC-CCCcEEEEecCchhhhh
Q 001281 270 PCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAA-APNSKIIVTTRHSHVAS 334 (1108)
Q Consensus 270 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 334 (1108)
......-+...-.+.+.+-.++=++++|+.-.. +....+.+...+... ..|..||++|.+...+.
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 011111222233456667777889999987332 233344444444432 23667888887766554
No 325
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.99 E-value=0.19 Score=53.02 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=60.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccc---------ccceeEEEEeCCCC-CHHHHHHHHHHHhcCCCC---------C
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSDI---------KFDIKAWVCVSDEF-DVLSISMALLESITCKPC---------D 272 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~---------~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---------~ 272 (1108)
+..|+|++|+|||+||..++-....... .-..+++++..... .+.+-+..+...++.... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5679999999999999888753221100 11234555544433 234444455544421100 0
Q ss_pred -------c---ccHHHHHHHHHHHh-CCceEEEEEeCCCC------CChhhHHHHHhhhcc--CCCCcEEEEecCch
Q 001281 273 -------L---KALNEVQVQLQKAL-DGKKFLLVLDDVWN------ENYSLWEDLKAPFLA--AAPNSKIIVTTRHS 330 (1108)
Q Consensus 273 -------~---~~~~~~~~~l~~~l-~~kr~LlVlDdv~~------~~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 330 (1108)
. .........+.+.+ ..+.-+||+|-+-. .+......+...+.. ...|+.||+++...
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 0 01112223333333 35677999996521 223344444444432 23577888877653
No 326
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.043 Score=51.27 Aligned_cols=44 Identities=32% Similarity=0.365 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCK 269 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 269 (1108)
+|.|-|++|.||||+|+.+.++...+- | +.-.++++|+++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~--------v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL--------V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce--------e------eccHHHHHHHHHcCCC
Confidence 689999999999999999998765421 1 2335778888887754
No 327
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.97 E-value=0.1 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|+|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998864
No 328
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.97 E-value=0.15 Score=54.39 Aligned_cols=89 Identities=17% Similarity=0.106 Sum_probs=48.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH--HHHHHHHHHHhcCCCC---CcccHHH-HHH
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV--LSISMALLESITCKPC---DLKALNE-VQV 281 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~-~~~ 281 (1108)
.+.+++.++|++|+||||++..++..... .-..+.+++... +.. .+-+....+..+.+.. ...+... ...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~---~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKK---QGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 34689999999999999999888765432 222455565442 222 2333334444442211 1112222 223
Q ss_pred HHHHHhCCceEEEEEeCCC
Q 001281 282 QLQKALDGKKFLLVLDDVW 300 (1108)
Q Consensus 282 ~l~~~l~~kr~LlVlDdv~ 300 (1108)
.+.....+..-++++|-.-
T Consensus 146 ~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHCCCCEEEEeCCC
Confidence 3444444445678888773
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.95 E-value=0.12 Score=51.44 Aligned_cols=23 Identities=43% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
++.++|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999888754
No 330
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.87 E-value=0.025 Score=64.70 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=40.3
Q ss_pred ceeccchhHHHHHHHHhCCC-CCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 185 AVYGRDDDKAKILDMVLSDD-PSDSMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
+++|.++.+++++..|.... ..+..-+++.++|++|+||||||+.+.+-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 68999999999999983211 1123457999999999999999999988543
No 331
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.87 E-value=0.084 Score=58.02 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=41.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCcccc---ccccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVS---DIKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
...++-|+|.+|+|||++|..++-..... +..-..++|++....|+..++. ++++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 35789999999999999998777432211 1012368999999998887764 55665544
No 332
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.84 E-value=0.32 Score=49.26 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=33.7
Q ss_pred HHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhcc--CCCCcEEEEecCchhhhhhcc
Q 001281 282 QLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLA--AAPNSKIIVTTRHSHVASTMG 337 (1108)
Q Consensus 282 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~ 337 (1108)
.+.+.|.-++=+||+|..-+. +......+...+.. ...+-.+|+.|-+-.++.+++
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 467778888899999987331 11122223333322 345667888888877666654
No 333
>PRK07667 uridine kinase; Provisional
Probab=94.84 E-value=0.036 Score=56.11 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 193 KAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++.+.+.... ++..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~---~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHK---ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcC---CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666664433 335899999999999999999998754
No 334
>PTZ00301 uridine kinase; Provisional
Probab=94.83 E-value=0.038 Score=56.27 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|.|.+|.||||+|+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 5799999999999999999887643
No 335
>PRK00625 shikimate kinase; Provisional
Probab=94.82 E-value=0.12 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.|.++||+|+||||+|+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 336
>PRK10867 signal recognition particle protein; Provisional
Probab=94.80 E-value=0.11 Score=59.03 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+.+|.++|.+|+||||+|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999887776543
No 337
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.79 E-value=0.18 Score=53.46 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=66.1
Q ss_pred hHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEE---eCCCCCHHHHHHHHHHHhcC
Q 001281 192 DKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVC---VSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~ 268 (1108)
..+.++..+... +...-++|+|+.|.|||||.+.+...... ..+.+++. +...... .++......
T Consensus 97 ~~~~~l~~l~~~----~~~~~~~i~g~~g~GKttl~~~l~~~~~~----~~G~i~~~g~~v~~~d~~----~ei~~~~~~ 164 (270)
T TIGR02858 97 AADKLLPYLVRN----NRVLNTLIISPPQCGKTTLLRDLARILST----GISQLGLRGKKVGIVDER----SEIAGCVNG 164 (270)
T ss_pred cHHHHHHHHHhC----CCeeEEEEEcCCCCCHHHHHHHHhCccCC----CCceEEECCEEeecchhH----HHHHHHhcc
Confidence 344555555532 22578999999999999999999986542 12223321 1111111 222222211
Q ss_pred CCC-------Cc-ccHHHHHHHHHHHh-CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhh
Q 001281 269 KPC-------DL-KALNEVQVQLQKAL-DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVA 333 (1108)
Q Consensus 269 ~~~-------~~-~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 333 (1108)
-.. +. .+... ...+...+ ...+-++++|.+.. .+.+..+...+ ..|..||+||-+..+.
T Consensus 165 ~~q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 165 VPQHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 111 00 11111 11222222 25788999999843 35555555554 2578899999876554
No 338
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.77 E-value=0.068 Score=61.09 Aligned_cols=88 Identities=18% Similarity=0.113 Sum_probs=45.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE-FDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
..+++|+|++|+||||++..+......+. ....+..++.... ....+.++...+.++.......+..++...+.+ +.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 57999999999999999988876432211 1233445544321 112222333333333322222233334433333 33
Q ss_pred CceEEEEEeCCC
Q 001281 289 GKKFLLVLDDVW 300 (1108)
Q Consensus 289 ~kr~LlVlDdv~ 300 (1108)
..-+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588888874
No 339
>PRK05439 pantothenate kinase; Provisional
Probab=94.75 E-value=0.12 Score=55.56 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+..-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999887643
No 340
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.71 E-value=0.097 Score=53.31 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCcccHHH----
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF-DVLSISMALLESITC-------KPCDLKALNE---- 278 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~---- 278 (1108)
.-++|.|.+|+|||+|+..+.+... -+.++++.+++.. .+.++.+++...-.. ...+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~-----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD-----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc-----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 4688999999999999999988753 3445888887653 455555555432111 1111111111
Q ss_pred -HHHHHHHHh--CCceEEEEEeCC
Q 001281 279 -VQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 279 -~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
..-.+.+++ +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 111223333 689999999999
No 341
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.70 E-value=0.097 Score=54.68 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
....+++|.|+.|.|||||++.+....+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999987654
No 342
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.70 E-value=0.18 Score=48.54 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
||.|+|.+|.||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988754
No 343
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.68 E-value=0.11 Score=56.91 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=39.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccc---cccccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAV---SDIKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
...++.|+|.+|+||||+|..++..... .+.....++|++....++..++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3589999999999999999988753221 1101235789998887777753 344555443
No 344
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.68 E-value=0.3 Score=55.47 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+.++.++|.+|+||||+|..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36899999999999999987777653
No 345
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.67 E-value=0.14 Score=52.06 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=49.2
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEE-------EeCCCCCHHHH--HHHHHHHhcCCCCCc----
Q 001281 207 DSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWV-------CVSDEFDVLSI--SMALLESITCKPCDL---- 273 (1108)
Q Consensus 207 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~~~~~~~~~~~--~~~i~~~l~~~~~~~---- 273 (1108)
.+++.+|.++||+|.||||..+.++.+...+. ....++-. ......++++. .++..++.+..+.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~-~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKK-TPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhcc-CCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 34577889999999999999999988765433 22222211 12223344443 466777666554422
Q ss_pred -----ccHHHHHHHHHHHhCCceEEE
Q 001281 274 -----KALNEVQVQLQKALDGKKFLL 294 (1108)
Q Consensus 274 -----~~~~~~~~~l~~~l~~kr~Ll 294 (1108)
...++....+.+.-..-.|.|
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~l 120 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVL 120 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEE
Confidence 123444455555444434443
No 346
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.64 E-value=0.26 Score=59.87 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=80.3
Q ss_pred CceeccchhHHHHHHHHh---CCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHH
Q 001281 184 RAVYGRDDDKAKILDMVL---SDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVL 256 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~---~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 256 (1108)
.++.|.+...+++.+... ... .+..-.+-|.++|++|.|||++|+.+...... .| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~---~f---~~is~~~----- 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---PF---FTISGSD----- 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---CE---EEEehHH-----
Confidence 356676666555544332 111 01111344889999999999999999876433 22 1222211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC----------hhhHHHHHhhh----cc--CCCC
Q 001281 257 SISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN----------YSLWEDLKAPF----LA--AAPN 320 (1108)
Q Consensus 257 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~~l----~~--~~~g 320 (1108)
+.. +. .+ .........+.......+++|++|+++.-. ...+......+ .. ...+
T Consensus 221 -~~~-~~--~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 -FVE-MF--VG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred -hHH-hh--hc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 110 00 00 011122222333334568999999984310 11222222221 11 1234
Q ss_pred cEEEEecCchhhhhhc-----cccceeeCCCCChhhHHHHHHhhhcC
Q 001281 321 SKIIVTTRHSHVASTM-----GSVEHYNLSLLSDDDCWFVFMNHAFY 362 (1108)
Q Consensus 321 s~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~ 362 (1108)
.-||.||...+..... .-...+.+...+.++-.+++..+...
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 5566677765433321 12356778888888877888776643
No 347
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.14 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.+....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998654
No 348
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.63 E-value=0.15 Score=56.19 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=40.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHHHHHHHHhc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSISMALLESIT 267 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 267 (1108)
..++-|+|.+|+|||+++.+++....... ..-..++||+....++..++. ++++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 57999999999999999998876543210 012378999999888877654 4444444
No 349
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.63 E-value=0.24 Score=59.13 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=73.6
Q ss_pred cCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHH
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 261 (1108)
....++|....+.++.+.+..-... ..-|.|+|..|+|||++|+.+++...... ...+.|++..-.+ ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~---~~pvli~Ge~GtGK~~lA~~ih~~s~r~~---~pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARS---NSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAALSE--TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCc---CCCEEEECCCCccHHHHHHHHHHhCCCCC---CCeEEeecCCCCH--HHHHH
Confidence 3457999999988888877533211 23567999999999999999987532211 1233444443321 22211
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEEecCc
Q 001281 262 LLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIVTTRH 329 (1108)
Q Consensus 262 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 329 (1108)
.+ ++........... ...........-.|+||++..-....+..+...+..+. ...+||.||..
T Consensus 266 ~l--fg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 EL--FGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred HH--cCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 11 1111100000000 00000011234568999997766666777777664322 13588888754
No 350
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.62 E-value=0.3 Score=50.15 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=36.2
Q ss_pred HHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhcc-CCCCcEEEEecCchhhhhhccccceeeCCCC
Q 001281 283 LQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLA-AAPNSKIIVTTRHSHVASTMGSVEHYNLSLL 347 (1108)
Q Consensus 283 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L 347 (1108)
+...+..++-++++|+--.. +....+.+...+.. ...|..||++|.+...... ...+.++..
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 45556667889999986322 23344445444443 2346778888877654443 455666553
No 351
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.61 E-value=0.11 Score=52.50 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE 252 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 252 (1108)
++.|.|.+|+|||++|.++...... .-..++|++..+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCC
Confidence 3679999999999999887665322 2235778876543
No 352
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.60 E-value=0.024 Score=57.55 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
||+|.|.+|+||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987654
No 353
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.074 Score=61.32 Aligned_cols=71 Identities=25% Similarity=0.230 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC--CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE--FDVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
..-|.|.|+.|+|||+||+++++... ++ ..-.+.+|+++.- ...+.+++.+. ..+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~-~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KD-LIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cc-cceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHH
Confidence 45688999999999999999998765 33 3444556665532 12233322222 2233455
Q ss_pred CCceEEEEEeCC
Q 001281 288 DGKKFLLVLDDV 299 (1108)
Q Consensus 288 ~~kr~LlVlDdv 299 (1108)
...+-+|||||+
T Consensus 492 ~~~PSiIvLDdl 503 (952)
T KOG0735|consen 492 WYAPSIIVLDDL 503 (952)
T ss_pred hhCCcEEEEcch
Confidence 678999999998
No 354
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.57 E-value=0.077 Score=58.79 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=48.4
Q ss_pred CceeccchhHHHHHHHHhCC--------C-CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC-CC
Q 001281 184 RAVYGRDDDKAKILDMVLSD--------D-PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD-EF 253 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--------~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~ 253 (1108)
..++|.++.+..+.-.+... . ...-..+-|.++|++|+|||++|+.+.......-...+...+...+. ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45788888888776665531 0 01112467889999999999999999887543211223222222222 22
Q ss_pred CHHHHHHHHHHH
Q 001281 254 DVLSISMALLES 265 (1108)
Q Consensus 254 ~~~~~~~~i~~~ 265 (1108)
+...+++.+.+.
T Consensus 92 dvE~i~r~l~e~ 103 (441)
T TIGR00390 92 DVESMVRDLTDA 103 (441)
T ss_pred CHHHHHHHHHHH
Confidence 455665555543
No 355
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.56 E-value=0.025 Score=45.92 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 356
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.53 E-value=0.025 Score=53.03 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001281 213 IPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~ 233 (1108)
|+|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 357
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.52 E-value=0.13 Score=57.09 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=65.0
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHH
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLE 264 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 264 (1108)
.++|+++....+...+.... -+-+.|.+|+|||+||+.+...... ..++|.+.......++.....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~-------~vll~G~PG~gKT~la~~lA~~l~~------~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG-------HVLLEGPPGVGKTLLARALARALGL------PFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC-------CEEEECCCCccHHHHHHHHHHHhCC------CeEEEecCCCCCHHHhcCchhH
Confidence 48898888888887776553 5789999999999999999986431 2345556655555544322221
Q ss_pred HhcCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhc
Q 001281 265 SITCKPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFL 315 (1108)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 315 (1108)
...... ..-.++. ..-+.++.+|.++...+.....+...+.
T Consensus 92 ~~~~~~----------~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 92 AALLLE----------PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred hhhhcc----------CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 111000 0000011 1112599999998877655555555443
No 358
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.51 E-value=0.032 Score=53.17 Aligned_cols=27 Identities=41% Similarity=0.406 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
..||.|+|.+|.||||||+++.+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999987543
No 359
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.2 Score=61.07 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=72.5
Q ss_pred CceeccchhHHHHHHHHhCCCCCCC---CeEEEEEEcCCCCcHHHHHHHHhcCccccccccc-eeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDS---MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFD-IKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.++.+..|.+.+.....+.. ......+.|+.|+|||-||+++..-. |+ .-.+|++. +.+..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~------Fgse~~~IriD----mse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV------FGSEENFIRLD----MSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH------cCCccceEEec----hhhhh
Confidence 3578889999999888876553322 46678899999999999999887642 22 22333332 22222
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCceE-EEEEeCCCCCChhhHHHHHhhhc
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKALDGKKF-LLVLDDVWNENYSLWEDLKAPFL 315 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~ 315 (1108)
. +.+.++.+ +..... +....|.+.++.++| +|+||||...++.....+...+.
T Consensus 632 e-vskligsp-~gyvG~-e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 632 E-VSKLIGSP-PGYVGK-EEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred h-hhhccCCC-cccccc-hhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 2 33333332 222111 222366777777776 66689997766665555555554
No 360
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.48 E-value=0.094 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.|.|+|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998753
No 361
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.48 E-value=0.26 Score=51.29 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=30.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.++.|.|..|+||||+|.+++...... . ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--G-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--C-CcEEEEeCCC--CHHHHHHHH
Confidence 3599999999999999986665543211 1 3456666433 345555554
No 362
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.48 E-value=0.069 Score=59.17 Aligned_cols=84 Identities=25% Similarity=0.312 Sum_probs=49.6
Q ss_pred CCceeccchhHHHHHHHHhCC--------CC-CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeC-CC
Q 001281 183 ERAVYGRDDDKAKILDMVLSD--------DP-SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVS-DE 252 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~--------~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~ 252 (1108)
...++|.++.+..+..++... .. .....+-+.++|+.|+|||++|+.+.......-..++...|...+ ..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 345889998888888777431 00 011246789999999999999999987654321122332222221 12
Q ss_pred CCHHHHHHHHHHHh
Q 001281 253 FDVLSISMALLESI 266 (1108)
Q Consensus 253 ~~~~~~~~~i~~~l 266 (1108)
.+...+.+.+.+..
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 24555555555443
No 363
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.45 E-value=0.046 Score=58.29 Aligned_cols=90 Identities=22% Similarity=0.345 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCc
Q 001281 194 AKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDL 273 (1108)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 273 (1108)
..+++.+.... +-|.++|+.|+|||++++......... .+ ...-++.+...+...+++.+-..+.......
T Consensus 23 ~~ll~~l~~~~------~pvLl~G~~GtGKT~li~~~l~~l~~~--~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~ 93 (272)
T PF12775_consen 23 SYLLDLLLSNG------RPVLLVGPSGTGKTSLIQNFLSSLDSD--KY-LVITINFSAQTTSNQLQKIIESKLEKRRGRV 93 (272)
T ss_dssp HHHHHHHHHCT------EEEEEESSTTSSHHHHHHHHHHCSTTC--CE-EEEEEES-TTHHHHHHHHCCCTTECECTTEE
T ss_pred HHHHHHHHHcC------CcEEEECCCCCchhHHHHhhhccCCcc--cc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCC
Confidence 45666666543 556899999999999999988754321 11 1334455544333333221111111100000
Q ss_pred ccHHHHHHHHHHHhCCceEEEEEeCCCCC
Q 001281 274 KALNEVQVQLQKALDGKKFLLVLDDVWNE 302 (1108)
Q Consensus 274 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 302 (1108)
. .--.+|++++.+||+--.
T Consensus 94 ~----------gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 94 Y----------GPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp E----------EEESSSEEEEEEETTT-S
T ss_pred C----------CCCCCcEEEEEecccCCC
Confidence 0 001478999999999443
No 364
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.44 E-value=0.12 Score=48.28 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=21.6
Q ss_pred cCCCCCCCcEeEeeccCccccccccccc-cCCCcceEecccccCCCCCcccCCCCCCCccEEeee
Q 001281 1027 GLHVLSSPEDVSIEENCMSLVSFSEVIF-LMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIK 1090 (1108)
Q Consensus 1027 ~l~~l~~L~~L~l~~~c~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~ 1090 (1108)
.|.++++|+.+.+. +.+..++...+ .+++|+.+.+.. ++..++...+.+. .|+.+.+.
T Consensus 53 ~F~~~~~l~~i~~~---~~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 53 AFSNCKSLESITFP---NNLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT-TT-EEEEET---STT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred eeeccccccccccc---ccccccccccccccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 34444455555553 14444444332 255555555532 2444444444444 55544443
No 365
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.41 E-value=0.04 Score=54.13 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=50.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
..++.+.|+.|+|||.+|+.+..-... + .....+-++.+......+. ..++..+...........
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~-~~~~~~~~d~s~~~~~~~~-~~~~~~l~~~~~~~v~~~------------ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-G-SERPLIRIDMSEYSEGDDV-ESSVSKLLGSPPGYVGAE------------ 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--S-SCCEEEEEEGGGHCSHHHC-SCHCHHHHHHTTCHHHHH------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-C-CccchHHHhhhcccccchH-Hhhhhhhhhcccceeecc------------
Confidence 568899999999999999998875431 1 1234455555544331111 111111111111100000
Q ss_pred ceEEEEEeCCCCCCh-----------hhHHHHHhhhc
Q 001281 290 KKFLLVLDDVWNENY-----------SLWEDLKAPFL 315 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~-----------~~~~~l~~~l~ 315 (1108)
..-+|+||++..... ..|..+...+.
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 111999999977777 66777777664
No 366
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.41 E-value=0.6 Score=47.91 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999764
No 367
>PRK06217 hypothetical protein; Validated
Probab=94.40 E-value=0.062 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
.|.|.|++|.||||+|+++......
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999987543
No 368
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.36 E-value=0.034 Score=57.25 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+..+|+|.|.+|+||||||+.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998854
No 369
>PRK06547 hypothetical protein; Provisional
Probab=94.36 E-value=0.055 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...+|+|.|++|+||||+|+.+....
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998754
No 370
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.34 E-value=0.15 Score=56.72 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
..++=+-|||..|.|||.|...+|+...++. . .++ ..-....++.+.+.........+. .+.+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k--~R~--------HFh~Fm~~vh~~l~~~~~~~~~l~----~va~~l 124 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-K--RRV--------HFHEFMLDVHSRLHQLRGQDDPLP----QVADEL 124 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccc-c--ccc--------cccHHHHHHHHHHHHHhCCCccHH----HHHHHH
Confidence 3467899999999999999999998765422 0 011 111233333333322211122222 334455
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhhcc-CCCCcEEEEecC
Q 001281 288 DGKKFLLVLDDVWNENYSLWEDLKAPFLA-AAPNSKIIVTTR 328 (1108)
Q Consensus 288 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR 328 (1108)
.++..||.||.+.-.+..+-.-+...+.. ...|..+|.||-
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 66777999999866655554444444443 345655555553
No 371
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.33 E-value=0.34 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 372
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.32 E-value=0.15 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999987644
No 373
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.31 E-value=0.2 Score=55.30 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=40.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHHHHHHHHhc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSISMALLESIT 267 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 267 (1108)
...++-|+|++|+|||++|.+++....... ..-..++||+..+.++...+. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 357999999999999999998876532211 012478999999888877654 3444444
No 374
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.30 E-value=0.44 Score=48.76 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.++...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 375
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.30 E-value=0.079 Score=53.84 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=58.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDL---KALNEVQVQLQKA 286 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 286 (1108)
.+++.|.|+.|.||||+.+.+..-.-. .....+|.+.. .. ..+...+...++....-. .....-..++...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l----a~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM----AQIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH----HHcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 378999999999999999887643110 01111111110 00 112222233332221111 1111111122222
Q ss_pred h--CCceEEEEEeCCCCCC-hhhH----HHHHhhhccCCCCcEEEEecCchhhhhhcc
Q 001281 287 L--DGKKFLLVLDDVWNEN-YSLW----EDLKAPFLAAAPNSKIIVTTRHSHVASTMG 337 (1108)
Q Consensus 287 l--~~kr~LlVlDdv~~~~-~~~~----~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 337 (1108)
+ ..++-|+++|...... ..+. ..+...+. ..|+.+|++|-+..++..+.
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 2 3567899999974421 2221 12233332 23789999999888776654
No 376
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.55 Score=47.10 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=36.6
Q ss_pred HHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhcc-CCCCcEEEEecCchhhhhhccccc
Q 001281 281 VQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLA-AAPNSKIIVTTRHSHVASTMGSVE 340 (1108)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~ 340 (1108)
..+.+.+--++=+.|||.-.+- +.+....+...+.. ...|+-+|+.|-.+.++....++.
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 3455555567889999988542 22334444433332 245777777777788887775543
No 377
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.28 E-value=0.2 Score=61.90 Aligned_cols=134 Identities=17% Similarity=0.120 Sum_probs=73.3
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
..++|+...+.++.+.+..-... ..-|.|+|..|+|||++|+.++......+ ...+.+++..-.. ..+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~---~~pVLI~GE~GTGK~~lA~~ih~~s~r~~---~~~v~i~c~~~~~-~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQS---DSTVLILGETGTGKELIARAIHNLSGRNN---RRMVKMNCAAMPA-GLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCC---CCCEEEECCCCcCHHHHHHHHHHhcCCCC---CCeEEEecccCCh-hHhhhhhc
Confidence 46899998888887665432211 24678999999999999999987542211 2334444443221 11111111
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEEecCc
Q 001281 264 ESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIVTTRH 329 (1108)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 329 (1108)
........... ......+ -....-.|+||+|..-.......+...+.... .+.|||.||..
T Consensus 449 g~~~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred Ccccccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11110000000 0011111 12234579999997766666777776664321 34588888864
No 378
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.23 Score=59.93 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=49.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD--VLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
.+|+.++|+.|+||||++..++....... ....+..++.. .+. ..+-++...+.++.+.....+.+++...+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE-GADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc-CCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-h
Confidence 47999999999999999988887542211 11234455443 222 3344555555565543333344444444433 3
Q ss_pred CCceEEEEEeCCC
Q 001281 288 DGKKFLLVLDDVW 300 (1108)
Q Consensus 288 ~~kr~LlVlDdv~ 300 (1108)
+++ =+|++|=.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 333 366677663
No 379
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.24 E-value=0.42 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.+....
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999888754
No 380
>PRK14527 adenylate kinase; Provisional
Probab=94.24 E-value=0.11 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
..+|.|+|++|+||||+|+.+.....
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999999987543
No 381
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.22 E-value=0.19 Score=53.42 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF 253 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 253 (1108)
.-.++.|.|.+|+|||++|.++...... .-..+++++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVESPA 76 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecCCc
Confidence 3579999999999999999987654322 22357788876433
No 382
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.26 Score=56.02 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=74.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
+.-|.++|++|.|||-||++|++.... .| ++|-.+ +++... .|. +...+...+++.=..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~---NF-----isVKGP----ELlNkY---VGE------SErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA---NF-----ISVKGP----ELLNKY---VGE------SERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC---ce-----EeecCH----HHHHHH---hhh------HHHHHHHHHHHhhcC
Confidence 556789999999999999999997544 44 333322 111111 111 111122222333346
Q ss_pred ceEEEEEeCCCCC-----ChhhH------HHHHhhhcc--CCCCcEEEEecCchhhhhhc--c---ccceeeCCCCChhh
Q 001281 290 KKFLLVLDDVWNE-----NYSLW------EDLKAPFLA--AAPNSKIIVTTRHSHVASTM--G---SVEHYNLSLLSDDD 351 (1108)
Q Consensus 290 kr~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~iivTtR~~~v~~~~--~---~~~~~~l~~L~~~~ 351 (1108)
-+|+|.||.+..- +...| .++..-+.. ...|.-||-.|..+++.... . -+..+-|+.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7999999998321 11112 222222222 23566777777655554331 1 23567777778888
Q ss_pred HHHHHHhhhcC
Q 001281 352 CWFVFMNHAFY 362 (1108)
Q Consensus 352 ~~~lf~~~~~~ 362 (1108)
-.++++.....
T Consensus 684 R~~ILK~~tkn 694 (802)
T KOG0733|consen 684 RVAILKTITKN 694 (802)
T ss_pred HHHHHHHHhcc
Confidence 88888887753
No 383
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.20 E-value=0.48 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 699999999999999999998653
No 384
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.034 Score=54.80 Aligned_cols=26 Identities=42% Similarity=0.521 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
-.+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999754
No 385
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.15 E-value=0.27 Score=51.51 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE 252 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 252 (1108)
-.++.|.|.+|+||||+|.++...... .-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 479999999999999999887643221 2345788877544
No 386
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.15 E-value=0.17 Score=47.37 Aligned_cols=98 Identities=13% Similarity=0.263 Sum_probs=45.6
Q ss_pred CCCCCCCCcEEEEcc-cCCCcccccCCCCCccEEEEeccCCccccccccCC-cccCCCCCCCcEeEeeccCccccccccc
Q 001281 975 AMDSKSLPTSVTISN-VLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKP-EQGLHVLSSPEDVSIEENCMSLVSFSEV 1052 (1108)
Q Consensus 975 ~~~~~~~L~~L~l~~-c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~c~~l~~lp~~ 1052 (1108)
.|..+++|+.+++.+ ...+........++|+.+.+.++ +..+ ...|..+++|+.+.+. . ++..++..
T Consensus 30 ~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~--------~~~i~~~~F~~~~~l~~i~~~--~-~~~~i~~~ 98 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPNN--------LKSIGDNAFSNCTNLKNIDIP--S-NITEIGSS 98 (129)
T ss_dssp TTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETST--------T-EE-TTTTTT-TTECEEEET--T-T-BEEHTT
T ss_pred hcccccccccccccccccccceeeeeccccccccccccc--------ccccccccccccccccccccC--c-cccEEchh
Confidence 444566666666654 22222222455666777877542 2222 3567778999999996 3 47778775
Q ss_pred cccCCCcceEecccccCCCCCcccCCCCCCCcc
Q 001281 1053 IFLMNNLRYLKIENSRALKSLPQEVMGNNAQLE 1085 (1108)
Q Consensus 1053 ~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~ 1085 (1108)
.+.-.+|+.+.+.+ .++.++...|.+.++|+
T Consensus 99 ~f~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 99 SFSNCNLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTTT-T--EEE-TT--B-SS----GGG------
T ss_pred hhcCCCceEEEECC--CccEECCccccccccCC
Confidence 55334888888754 67777766666555553
No 387
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.15 E-value=0.16 Score=56.00 Aligned_cols=133 Identities=14% Similarity=0.056 Sum_probs=70.7
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHH
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLE 264 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 264 (1108)
.++|+...+.++.+.+..-... -.-|.|+|..|+||+++|+.+....... -...+.|++.... ...+...++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~---~~pVlI~GE~GtGK~~lA~~iH~~s~r~---~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPL---DKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCC---CCCEEEECCCCCcHHHHHHHHHHhCCcc---CCCeEEEeCCCCC-HHHHHHHHcc
Confidence 5889988888888776543221 2457799999999999999998642211 1123344444422 2222222221
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEEecCc
Q 001281 265 SITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIVTTRH 329 (1108)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 329 (1108)
.-......... .....+ .....-.|+||+|..-....+..+...+..+. ...+||.||..
T Consensus 80 ~~~~~~~g~~~--~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccCCccc--ccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 11000000000 000011 11223458899997766666777766664321 13688888764
No 388
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.15 E-value=0.067 Score=54.85 Aligned_cols=62 Identities=23% Similarity=0.191 Sum_probs=37.9
Q ss_pred hHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHH
Q 001281 192 DKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLS 257 (1108)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 257 (1108)
+..++++.+.... ++..+|+|+|++|+|||||..++....+.++ +--.++-|.-|.+++--.
T Consensus 14 ~~~~ll~~l~~~~---g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-~~VaVlAVDPSSp~tGGA 75 (266)
T PF03308_consen 14 EARELLKRLYPHT---GRAHVIGITGPPGAGKSTLIDALIRELRERG-KRVAVLAVDPSSPFTGGA 75 (266)
T ss_dssp HHHHHHHHHGGGT---T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGGGCC---
T ss_pred HHHHHHHHHHhhc---CCceEEEeeCCCCCcHHHHHHHHHHHHhhcC-CceEEEEECCCCCCCCCc
Confidence 4556666665432 3468999999999999999988887765444 334455555555555433
No 389
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.13 E-value=0.057 Score=56.06 Aligned_cols=62 Identities=24% Similarity=0.183 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 194 AKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
.+++..+.... ++..+|+|+|.||+|||||...+....+.++ +--.++-|.-|.+++--.++
T Consensus 38 ~~ll~~l~p~t---G~a~viGITG~PGaGKSTli~~L~~~l~~~G-~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRT---GNAHVIGITGVPGAGKSTLIEALGRELRERG-HRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcC---CCCcEEEecCCCCCchHHHHHHHHHHHHHCC-cEEEEEEECCCCCCCCcccc
Confidence 45555554332 3468999999999999999988887765555 44556666666666544443
No 390
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.10 E-value=0.044 Score=56.28 Aligned_cols=25 Identities=44% Similarity=0.575 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|+|++|+||||||+.+....
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999998743
No 391
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.10 E-value=0.12 Score=53.19 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37889999999999999988863
No 392
>PRK06762 hypothetical protein; Provisional
Probab=94.07 E-value=0.04 Score=54.39 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 393
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.06 E-value=0.42 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.++...
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998754
No 394
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.05 E-value=0.015 Score=58.69 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=56.8
Q ss_pred hhcCCCCcEEEeeCcccc-----ccchhhhcCccCcEeeecCCcCC----cccc-------hhccCCCCccEEeecCCCC
Q 001281 614 IKELKLLRYLNVAGTQIR-----SLPESTSSLMHLRVLILRDCSRL----TRLP-------SKMWNLINLRHLDIEGANS 677 (1108)
Q Consensus 614 i~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~----~~lp-------~~i~~L~~L~~L~l~~~~~ 677 (1108)
+.-+..+..++||+|.|. .+...|.+-.+|+..+++.- .. .++| ..+-++++|+..+|++|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 445788999999999886 34556677889999988862 22 2233 3356889999999999986
Q ss_pred CCcCCcc----CCCCCCCCccC
Q 001281 678 LEGMPYG----MEKLKHLQTLS 695 (1108)
Q Consensus 678 ~~~lp~~----i~~L~~L~~L~ 695 (1108)
....|.. |+.-+.|.+|.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~ 126 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLK 126 (388)
T ss_pred CcccchHHHHHHhcCCCceeEE
Confidence 6566654 44555566553
No 395
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.03 E-value=0.21 Score=56.13 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=52.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCcccHH----
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD-VLSISMALLESITCK-------PCDLKALN---- 277 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 277 (1108)
-..++|+|..|+|||||++.+.... ..+.++.+-+++... +.++...++..-+.. ..+.+...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 3578999999999999999998643 235566666766543 344555544331111 11111111
Q ss_pred -HHHHHHHHHh--CCceEEEEEeCC
Q 001281 278 -EVQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 278 -~~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
...-.+.+++ +++.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122344444 689999999999
No 396
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.01 E-value=0.23 Score=49.03 Aligned_cols=118 Identities=16% Similarity=0.044 Sum_probs=62.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC---CCCHHHHHHHH--HHH--hcCC-CC---Cc-cc--
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD---EFDVLSISMAL--LES--ITCK-PC---DL-KA-- 275 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i--~~~--l~~~-~~---~~-~~-- 275 (1108)
...|-|+|..|-||||.|..+.-+....+ . .+..+.+-. .......+..+ +.. .+.. .. +. .+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G--~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG--K-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC--C-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 36889999999999999976655432211 1 122222221 12233333221 000 0110 00 00 11
Q ss_pred -HHHHHHHHHHHhC-CceEEEEEeCCCC---CChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 276 -LNEVQVQLQKALD-GKKFLLVLDDVWN---ENYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 276 -~~~~~~~l~~~l~-~kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
..+.....++.+. ++-=+||||.+-. -..-..+++...+.....+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1222333445554 4556999999821 12234667777777777888999999974
No 397
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.57 Score=47.85 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.+++|+|..|.|||||++.+.....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 6999999999999999999887543
No 398
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.00 E-value=0.5 Score=48.23 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||.+.+..-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888653
No 399
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.00 E-value=0.51 Score=47.24 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.+++|+|..|.|||||++.+..-..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999987643
No 400
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.98 E-value=0.61 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||.+.+....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 401
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.98 E-value=0.55 Score=52.61 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|++|.||||||+.+.--
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcc
Confidence 58999999999999999988653
No 402
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.94 E-value=0.49 Score=48.49 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||.+.++.-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998753
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.93 E-value=0.25 Score=56.63 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=46.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD-EFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
..|++++|+.|+||||++..++.....+. ....+..|+... .....+-++...+.++.+.....+..+....+ ..++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-GASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-CCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 47999999999999999999887543221 112344555432 12233334444555544322222222222222 2334
Q ss_pred CceEEEEEeCCC
Q 001281 289 GKKFLLVLDDVW 300 (1108)
Q Consensus 289 ~kr~LlVlDdv~ 300 (1108)
++ ..+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 44 467777763
No 404
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.91 E-value=0.8 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.+....
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 405
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.90 E-value=0.38 Score=50.80 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=63.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccc--cccce--eEEEEeC----CCCCHHHHH--------------HHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSD--IKFDI--KAWVCVS----DEFDVLSIS--------------MALLESITC 268 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~--~~wv~~~----~~~~~~~~~--------------~~i~~~l~~ 268 (1108)
.+++|+|..|+|||||++.+........ ..++. +.++.-. ...++.+.+ .++++.++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 6899999999999999999987643211 11222 2222111 011222222 122233322
Q ss_pred CCC-----CcccHHH-HHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccC--CCCcEEEEecCchhhhhh
Q 001281 269 KPC-----DLKALNE-VQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAA--APNSKIIVTTRHSHVAST 335 (1108)
Q Consensus 269 ~~~-----~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~ 335 (1108)
... ..-+-.+ ..-.+...+..++=++++|+--.. +......+...+... ..|..||++|.+...+..
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 110 0111111 222355667778899999987332 223333344444332 236678888877655443
No 406
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.85 E-value=0.35 Score=51.20 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=52.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF-DVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
..+++++|.+|+||||++..+......+ -..+.+++..... ....-++...+.++.+.....+.+.+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3699999999999999998886643211 1234555554221 12222233333343322222334444443333212
Q ss_pred -CceEEEEEeCCCCC--ChhhHHHHHhhh
Q 001281 289 -GKKFLLVLDDVWNE--NYSLWEDLKAPF 314 (1108)
Q Consensus 289 -~kr~LlVlDdv~~~--~~~~~~~l~~~l 314 (1108)
++.-++++|..-.. +....+++...+
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~ 180 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETM 180 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 34568889987443 223444444443
No 407
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.85 E-value=0.088 Score=64.77 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++.|+|+.|.||||+.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 479999999999999999887653
No 408
>PRK05973 replicative DNA helicase; Provisional
Probab=93.83 E-value=0.35 Score=50.02 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=58.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----------CcccHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----------DLKALNE 278 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------~~~~~~~ 278 (1108)
-.++.|.|.+|+|||++|.++...... .-..+++++.... ..++...+. +++.... +....++
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~---~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMK---SGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHH
Confidence 368999999999999999887765422 2234667766554 334433332 2222111 1112233
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCC----ChhhHHHHHhhhcc--CCCCcEEEEecCc
Q 001281 279 VQVQLQKALDGKKFLLVLDDVWNE----NYSLWEDLKAPFLA--AAPNSKIIVTTRH 329 (1108)
Q Consensus 279 ~~~~l~~~l~~kr~LlVlDdv~~~----~~~~~~~l~~~l~~--~~~gs~iivTtR~ 329 (1108)
....+.+ ..+.-++|+|.+..- .......+...+.. ...|..||+|+..
T Consensus 138 ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl 192 (237)
T PRK05973 138 IIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQI 192 (237)
T ss_pred HHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 3333333 123458999987311 11112222222222 3567888888864
No 409
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.82 E-value=0.57 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|..|.|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999886
No 410
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.24 Score=48.28 Aligned_cols=118 Identities=22% Similarity=0.188 Sum_probs=60.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
.+++|+|..|.|||||++.+...... ..+.+++.-....... .......++.... ...-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~----~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP----TSGEILIDGKDIAKLP--LEELRRRIGYVPQ-LSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCEEcccCC--HHHHHhceEEEee-CCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999876432 2333443221111100 0011111111000 111122223355566667
Q ss_pred eEEEEEeCCCCC-ChhhHHHHHhhhccC-CCCcEEEEecCchhhhhh
Q 001281 291 KFLLVLDDVWNE-NYSLWEDLKAPFLAA-APNSKIIVTTRHSHVAST 335 (1108)
Q Consensus 291 r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 335 (1108)
+=++++|+.-.. +......+...+... ..+..+|++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 889999987432 223334444443321 225678888877655444
No 411
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.42 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|..|.|||||++.+...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999999863
No 412
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.80 E-value=0.94 Score=47.06 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.+....
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999999998653
No 413
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.86 Score=47.85 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 589999999999999999987653
No 414
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.77 E-value=0.59 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.+....
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 415
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.77 E-value=0.48 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.+....
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999998754
No 416
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.75 E-value=0.39 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 417
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.69 Score=48.41 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||.+.+....
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999999998654
No 418
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.73 E-value=0.035 Score=49.85 Aligned_cols=22 Identities=55% Similarity=0.705 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001281 213 IPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999987653
No 419
>PTZ00035 Rad51 protein; Provisional
Probab=93.73 E-value=0.3 Score=53.90 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=39.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccc---cccccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAV---SDIKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
.-.++.|+|.+|+|||||+..++-.... .+..-..++|++....++..++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3579999999999999999888743321 0101235679988877777664 344555443
No 420
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.72 E-value=0.63 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||.+.+....
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998653
No 421
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.88 Score=45.65 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=71.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
.+++-|.++|++|.|||-||++|+++. ...|+.||... +.+.. ++.. ..-+.++.-.-+
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht--------~c~firvsgse----lvqk~---igeg---srmvrelfvmar--- 237 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSE----LVQKY---IGEG---SRMVRELFVMAR--- 237 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHH----HHHHH---hhhh---HHHHHHHHHHHH---
Confidence 457788999999999999999999742 34566676532 11111 1110 011111111111
Q ss_pred CCceEEEEEeCCCCC-----------ChhhHHH---HHhhhcc--CCCCcEEEEecCchhhhhhc-----cccceeeCCC
Q 001281 288 DGKKFLLVLDDVWNE-----------NYSLWED---LKAPFLA--AAPNSKIIVTTRHSHVASTM-----GSVEHYNLSL 346 (1108)
Q Consensus 288 ~~kr~LlVlDdv~~~-----------~~~~~~~---l~~~l~~--~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~ 346 (1108)
..-+-.|.+|.+.+. +.+.... +...+.. ..+.-+||..|..-++.+.. ..++.++.++
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 234677888877431 1111222 2222222 23567888877654443321 2335677777
Q ss_pred CChhhHHHHHHhhhc
Q 001281 347 LSDDDCWFVFMNHAF 361 (1108)
Q Consensus 347 L~~~~~~~lf~~~~~ 361 (1108)
-+++.-.++++-+..
T Consensus 318 p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 318 PNEEARLDILKIHSR 332 (404)
T ss_pred CCHHHHHHHHHHhhh
Confidence 777776777765543
No 422
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.70 E-value=0.28 Score=55.39 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=47.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcccH-----HHH
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCK------PCDLKAL-----NEV 279 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~-----~~~ 279 (1108)
..++|+|..|+|||||++.+...... ...+++..-.+..++.++....+...... ..+.+.. ...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~p----d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADAF----DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC----CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 57999999999999999988865432 22344433223344544444333332111 1111111 112
Q ss_pred HHHHHHHh--CCceEEEEEeCC
Q 001281 280 QVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 280 ~~~l~~~l--~~kr~LlVlDdv 299 (1108)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344444 588999999999
No 423
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.69 E-value=0.19 Score=55.47 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=66.2
Q ss_pred eeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 001281 186 VYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLES 265 (1108)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 265 (1108)
++|+...+.++.+.+..-... -.-|.|+|..|+||+++|+.++....... ...+-|++.... ...+...+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~---~~pVLI~GE~GtGK~~lAr~iH~~s~r~~---~pfv~vnc~~~~--~~~l~~~l-- 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL---DRPVLIIGERGTGKELIAARLHYLSKRWQ---GPLVKLNCAALS--ENLLDSEL-- 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC---CCCEEEECCCCChHHHHHHHHHHhcCccC---CCeEEEeCCCCC--hHHHHHHH--
Confidence 356666666666665433211 24578999999999999999986432111 122334444322 12221111
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEEecCc
Q 001281 266 ITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIVTTRH 329 (1108)
Q Consensus 266 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 329 (1108)
++........... ...........-.|+||++..-.......+...+.... ...+||.||..
T Consensus 71 fG~~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 71 FGHEAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred hccccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 1111100000000 00000112234568999997666666666666654321 23588888753
No 424
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.67 E-value=1.1 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.+++|+|+.|.|||||++.+..-..
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCC
Confidence 5899999999999999999987643
No 425
>PHA00729 NTP-binding motif containing protein
Probab=93.66 E-value=0.088 Score=53.49 Aligned_cols=24 Identities=46% Similarity=0.524 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
...|.|+|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999875
No 426
>PRK08149 ATP synthase SpaL; Validated
Probab=93.61 E-value=0.25 Score=55.64 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC-CCHHHHHHHHHHHhcCC-------CCCcccHH-----
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE-FDVLSISMALLESITCK-------PCDLKALN----- 277 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 277 (1108)
..++|+|..|+|||||++.++.... .+.++...+... .++.++..+........ ..+.+...
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 5889999999999999999987543 233344444433 34555555555532211 11111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCC
Q 001281 278 EVQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 278 ~~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
.....+.+++ ++|++||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1222334444 589999999999
No 427
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.60 E-value=0.25 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+++++|+.|+||||++..+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999877653
No 428
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.59 E-value=0.73 Score=47.90 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.+....
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998753
No 429
>PRK03839 putative kinase; Provisional
Probab=93.58 E-value=0.049 Score=54.54 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998653
No 430
>PRK04328 hypothetical protein; Provisional
Probab=93.56 E-value=0.3 Score=51.59 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=30.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF 253 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 253 (1108)
-.++.|.|.+|+|||++|.++...... .-...+|++..+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~---~ge~~lyis~ee~~ 63 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGVYVALEEHP 63 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEEeeCCH
Confidence 479999999999999999886654221 23457888876643
No 431
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.54 E-value=0.25 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001281 213 IPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998753
No 432
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.49 E-value=0.74 Score=48.20 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=65.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
+.+.++|+.|+|||+-++.+++.. ...+-+..+..++...+...+......... ....+....+...+.+.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHccC
Confidence 488999999999999999999853 223344566666666666666655544322 22334445556666888
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhhcc
Q 001281 291 KFLLVLDDVWNENYSLWEDLKAPFLA 316 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~~l~~~l~~ 316 (1108)
.-+|+.|+...-.....+.+......
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHh
Confidence 88999999866666677777665543
No 433
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.48 E-value=0.11 Score=49.43 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
..||.++|.+|.||||+|.+++.....
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999987543
No 434
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.45 E-value=0.52 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
-..++|+|+.|.|||||++.+..-..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999986543
No 435
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.45 E-value=0.27 Score=51.14 Aligned_cols=114 Identities=16% Similarity=0.256 Sum_probs=63.1
Q ss_pred ceeccchhHHHHHHHHhC--CCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 185 AVYGRDDDKAKILDMVLS--DDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~--~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
.++|..-.++.++..+.+ ......++-|++.+|+.|+||.-.|+.++++....+.+-+ .....
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHHh
Confidence 456665555555554432 1112456889999999999999999988876432220111 11111
Q ss_pred HHHhcCCCCCcccH----HHHHHHHHHHhC-CceEEEEEeCCCCCChhhHHHHHhhhc
Q 001281 263 LESITCKPCDLKAL----NEVQVQLQKALD-GKKFLLVLDDVWNENYSLWEDLKAPFL 315 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~----~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~ 315 (1108)
.....-+ ....+ +++...++..++ -+|-|+|+|+|..-.....+.+...+.
T Consensus 148 vat~hFP--~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 148 VATLHFP--HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhccCC--ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1122111 12222 233344444443 479999999996655555666555554
No 436
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.44 E-value=0.19 Score=52.53 Aligned_cols=118 Identities=18% Similarity=0.158 Sum_probs=65.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccc-------cceeEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcccH------
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIK-------FDIKAWVCVSD-EFDVLSISMALLESITCKPCDLKAL------ 276 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~------ 276 (1108)
.++.|+|.||+||||++-..+-........ ...+++|++.. ..++.+-++.+..+++.++.+..++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence 355677999999999996655432211112 34677777753 3456677788888888765432211
Q ss_pred ----------HHHHHHHHHHhCCc-eEEEEEeCCCC-----C-ChhhHHHHHhhhcc--CCCCcEEEEecC
Q 001281 277 ----------NEVQVQLQKALDGK-KFLLVLDDVWN-----E-NYSLWEDLKAPFLA--AAPNSKIIVTTR 328 (1108)
Q Consensus 277 ----------~~~~~~l~~~l~~k-r~LlVlDdv~~-----~-~~~~~~~l~~~l~~--~~~gs~iivTtR 328 (1108)
..+.++....+.++ +-++|+|-.-. + ...+...+...+.. ...+|.||...-
T Consensus 170 Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy~hH 240 (402)
T COG3598 170 GAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIYIHH 240 (402)
T ss_pred cCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 12233333444444 56888886521 1 11222333333332 346788887554
No 437
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.043 Score=53.30 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
+.|.+.|.+|+||||+|+++....+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4678999999999999999987654
No 438
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.42 E-value=0.25 Score=51.90 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=33.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHH
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 261 (1108)
.-.++.|.|.+|+|||++|.++...... .-..++||+..+ +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeC--CHHHHHHH
Confidence 3579999999999999999876554221 234678888765 34444443
No 439
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.41 E-value=0.62 Score=48.00 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
+++|+|+.|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999864
No 440
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.40 E-value=1.1 Score=47.07 Aligned_cols=52 Identities=12% Similarity=0.214 Sum_probs=31.6
Q ss_pred HHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccCCCCcEEEEecCchhhhh
Q 001281 283 LQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAS 334 (1108)
Q Consensus 283 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 334 (1108)
+.+.+-.++-++++|+-... +....+.+...+.....|..||++|.+.....
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 44555567789999987432 23334444444443334677888888776654
No 441
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.63 Score=54.33 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=41.3
Q ss_pred ccCCceeccchhH---HHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 181 RTERAVYGRDDDK---AKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 181 ~~~~~~vGr~~~~---~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
....++.|.++.+ .++++.|.++.. +..-++-|.++|++|.|||.||+++..+..+
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 4456788987554 566666765431 2244678899999999999999999998765
No 442
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.38 E-value=1.1 Score=47.76 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=72.4
Q ss_pred HHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccc-----------ccccceeEEEEeCCCCCHHHHHHH
Q 001281 193 KAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVS-----------DIKFDIKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~f~~~~wv~~~~~~~~~~~~~~ 261 (1108)
-+++...+..+.- .+..-++|+.|+||+++|..+....-.. +.|.|..+.......
T Consensus 6 ~~~L~~~i~~~rl----~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~--------- 72 (290)
T PRK05917 6 WEALIQRVRDQKV----PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG--------- 72 (290)
T ss_pred HHHHHHHHHcCCc----CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC---------
Confidence 3455555544332 4678899999999999997776543110 012222111111000
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc-hhhhhh
Q 001281 262 LLESITCKPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH-SHVAST 335 (1108)
Q Consensus 262 i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~ 335 (1108)
..-.+++. +.+.+.+ .+++=++|+|++..-+.+.+..+...+.....++.+|++|.+ ..+...
T Consensus 73 ----------~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 73 ----------RLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ----------CcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 00112222 2233332 355668899999777778888888888776677777766665 333323
Q ss_pred c-cccceeeCCCC
Q 001281 336 M-GSVEHYNLSLL 347 (1108)
Q Consensus 336 ~-~~~~~~~l~~L 347 (1108)
. .-...+.+.++
T Consensus 142 I~SRcq~~~~~~~ 154 (290)
T PRK05917 142 IRSRSLSIHIPME 154 (290)
T ss_pred HHhcceEEEccch
Confidence 2 11244555554
No 443
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.37 E-value=0.3 Score=57.72 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=74.8
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
...++|+...+.++.+.+..-... ..-|.|+|..|+|||++|+.+.......+ ...+.|++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~---~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~---~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS---DLNVLILGETGVGKELVARAIHAASPRAD---KPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC---CCcEEEECCCCccHHHHHHHHHHhCCcCC---CCeEEEEcccCCh-HHHHHHh
Confidence 457899999998888877643322 34678999999999999999987533211 2334455554332 1111112
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEEecCc
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIVTTRH 329 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 329 (1108)
.....+....... .....+. ....--|+||++..-.......+...+.... ...+||.||..
T Consensus 259 fG~~~g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cCccccccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1111100000000 0000011 1223347899997766666777776664322 24589988864
No 444
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.37 E-value=0.0047 Score=60.71 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=70.7
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+..++...+||++.|.+..+-..|+-++.|..|+++.|.|..+|+.++.+..+..+++..| ....+|.+++.+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4456788888998888877777788888888889998888888988888888888888774 578888888888999888
Q ss_pred eecCCC
Q 001281 671 DIEGAN 676 (1108)
Q Consensus 671 ~l~~~~ 676 (1108)
++-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 888776
No 445
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.37 E-value=0.38 Score=54.36 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=51.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCcccHH----
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD-VLSISMALLESITCK-------PCDLKALN---- 277 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 277 (1108)
-..++|+|..|+|||||++.+++... .+.++++-+++... +.++....+..-+.. ..+.+...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~-----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD-----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 36889999999999999999997643 34555666765543 334444444332111 11111111
Q ss_pred -HHHHHHHHHh--CCceEEEEEeCC
Q 001281 278 -EVQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 278 -~~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
...-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122344444 589999999999
No 446
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.35 E-value=0.27 Score=49.89 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccc-------cceeEEEEeCCCC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIK-------FDIKAWVCVSDEF 253 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~~~~~ 253 (1108)
.++.|+|++|+||||++..+.......... -..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488999999999999998877655322101 2367788776653
No 447
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.31 E-value=0.052 Score=30.03 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=3.6
Q ss_pred CcEEEeeCcccc
Q 001281 620 LRYLNVAGTQIR 631 (1108)
Q Consensus 620 L~~L~Ls~~~i~ 631 (1108)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333444443333
No 448
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.29 E-value=0.096 Score=50.64 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999999863
No 449
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.29 E-value=0.13 Score=58.94 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=53.3
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeE-EEEeCCCCC-HHHHHHHHHHHhcCCCCC
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKA-WVCVSDEFD-VLSISMALLESITCKPCD 272 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~~~~~~-~~~~~~~i~~~l~~~~~~ 272 (1108)
++++.+..-. .-.-..|+|++|+|||||++.+.+..... +-++.+ .+-|.+... +.++.+.+-.++-....+
T Consensus 405 RvIDll~PIG----kGQR~LIvgpp~aGKTtLL~~IAn~i~~n--~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D 478 (672)
T PRK12678 405 RVIDLIMPIG----KGQRGLIVSPPKAGKTTILQNIANAITTN--NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFD 478 (672)
T ss_pred eeeeeecccc----cCCEeEEeCCCCCCHHHHHHHHHHHHhhc--CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCC
Confidence 4555554332 23467899999999999999998854221 233333 444554443 222322221111111112
Q ss_pred ccc-----HHHHHHHHHHHh--CCceEEEEEeCC
Q 001281 273 LKA-----LNEVQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 273 ~~~-----~~~~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
.+. ...+.-.+.+++ .++.+||++|++
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 111 223333445555 689999999999
No 450
>PRK04040 adenylate kinase; Provisional
Probab=93.26 E-value=0.066 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 451
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=1.5 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
|---++|++|.|||++..++++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 445689999999999999999965
No 452
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.20 E-value=0.18 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcc
Q 001281 213 IPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
+.+.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999987653
No 453
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.20 E-value=0.08 Score=61.62 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=44.4
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEE
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVC 248 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 248 (1108)
.+++--.+-++++..||...-.+....+++.+.|++|+||||.++.++++. .|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 345555667788888886533333346799999999999999999999875 466677864
No 454
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.19 E-value=0.82 Score=48.08 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=32.5
Q ss_pred HHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccCCCCcEEEEecCchhhhhh
Q 001281 282 QLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAST 335 (1108)
Q Consensus 282 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 335 (1108)
.+.+.+-.++-++++|+-... +....+.+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 455666778899999987432 223344444444433236678888877655543
No 455
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.18 E-value=0.39 Score=50.46 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccc--cccccceeEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCcccHH---
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAV--SDIKFDIKAWVCVSDEFD-VLSISMALLESITCK-------PCDLKALN--- 277 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~--- 277 (1108)
.-++|.|-.|+|||+|+..+.++... ++ .-+.++++-+++... +.++..++.+.=... ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~-~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEE-ENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccC-CCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 46799999999999999988876431 11 356788888887653 455555554431111 11111111
Q ss_pred --HHHHHHHHHh---CCceEEEEEeCC
Q 001281 278 --EVQVQLQKAL---DGKKFLLVLDDV 299 (1108)
Q Consensus 278 --~~~~~l~~~l---~~kr~LlVlDdv 299 (1108)
...-.+.+++ .++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122345555 368999999999
No 456
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.17 E-value=0.93 Score=48.18 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.+..-.
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998753
No 457
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.15 E-value=0.14 Score=46.45 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 193 KAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
+..|.+.+... ...++-|++.+|+.|+|||.+|+.+++.
T Consensus 38 ~~ai~~~l~~~--~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 38 VNAIKGHLANP--NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHcCC--CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 34444455333 3456789999999999999988777765
No 458
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.13 E-value=0.33 Score=54.21 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=46.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCD-----LKALNEVQVQLQ 284 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 284 (1108)
-.++.|.|.+|+|||||+.+++..... .-..++|++..+. ...+ ..-++.++..... ..+.+++...+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 479999999999999999998875432 2235677766543 2222 2223444432211 122333333332
Q ss_pred HHhCCceEEEEEeCC
Q 001281 285 KALDGKKFLLVLDDV 299 (1108)
Q Consensus 285 ~~l~~kr~LlVlDdv 299 (1108)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567788876
No 459
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.12 E-value=0.64 Score=48.73 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.+++|+|..|.|||||.+.++....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999987643
No 460
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.12 E-value=0.22 Score=50.77 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=48.9
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCC---cccHHHHHHHH
Q 001281 207 DSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCD---LKALNEVQVQL 283 (1108)
Q Consensus 207 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l 283 (1108)
..++.++.+.|.+|.||||++..+..... ....+.++...-.........+... ...... ......+...+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~-----~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG-----GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc-----CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHH
Confidence 35688999999999999999999877431 2344555433211111111222222 111110 11123344555
Q ss_pred HHHhCCceEEEEEeCCCCCChhhHHHHHhhhcc
Q 001281 284 QKALDGKKFLLVLDDVWNENYSLWEDLKAPFLA 316 (1108)
Q Consensus 284 ~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 316 (1108)
.+....+++=+|+|..... ......+...+..
T Consensus 86 ~~~a~~~~~nii~E~tl~~-~~~~~~~~~~~k~ 117 (199)
T PF06414_consen 86 IEYAIENRYNIIFEGTLSN-PSKLRKLIREAKA 117 (199)
T ss_dssp HHHHHHCT--EEEE--TTS-SHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEecCCCC-hhHHHHHHHHHHc
Confidence 5555667778888988643 2334435555554
No 461
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.09 E-value=0.093 Score=51.15 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 3679999999999999999999876543
No 462
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.06 E-value=0.18 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
++++|+|+.|.||||+.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988864
No 463
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.8 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 699999999999999999998653
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.98 E-value=0.073 Score=53.26 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+||||+|+.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999988754
No 465
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.98 E-value=0.72 Score=46.71 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|.|+.|.|||||.+.+..-.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998754
No 466
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.95 E-value=0.89 Score=48.33 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
+..+|.|+|.+|+|||||+..+.+...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999999999988643
No 467
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.92 E-value=0.37 Score=54.41 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=48.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCcccHH-----
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD-EFDVLSISMALLESITCK-------PCDLKALN----- 277 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 277 (1108)
..++|+|..|+|||||++.+...... +..+.+.+.+ ...+.++....+..-+.. ..+.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~~-----~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTDA-----DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC-----CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 57899999999999999998876432 2223333333 333444444443332111 11111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCC
Q 001281 278 EVQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 278 ~~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
...-.+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222344555 578999999999
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.91 E-value=0.062 Score=54.79 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
+|+|.|.+|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998774
No 469
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.90 E-value=0.46 Score=53.66 Aligned_cols=85 Identities=24% Similarity=0.297 Sum_probs=50.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCcccHHHH--
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF-DVLSISMALLESITC-------KPCDLKALNEV-- 279 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~-- 279 (1108)
-..++|+|..|+|||||++.+.... ..+..+++.+++.. .+.+.+.+....=.. ...+.+.....
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 3588999999999999999998754 34445666666543 344545444321000 01111111111
Q ss_pred ---HHHHHHHh--CCceEEEEEeCC
Q 001281 280 ---QVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 280 ---~~~l~~~l--~~kr~LlVlDdv 299 (1108)
.-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 22344444 588999999999
No 470
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.88 E-value=0.072 Score=29.47 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=11.5
Q ss_pred CcccEEEecCccccccC
Q 001281 595 KKLRVLSLEGYYVTQLP 611 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp 611 (1108)
++|++|+|++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999998886
No 471
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.86 E-value=0.065 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998853
No 472
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.86 E-value=0.64 Score=50.80 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
+..++.++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999998887654
No 473
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.081 Score=50.33 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 001281 212 VIPIVGMAGIGKTTLAREVY 231 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~ 231 (1108)
.|+|+|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 474
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.84 E-value=0.84 Score=51.49 Aligned_cols=52 Identities=27% Similarity=0.281 Sum_probs=36.7
Q ss_pred CCceeccchhHHHHHHHHh-------C--CCCCC----CCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 183 ERAVYGRDDDKAKILDMVL-------S--DDPSD----SMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~-------~--~~~~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...++|.++.++.+...+. . ..... .....+.++|++|+|||++|+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4568999999988866551 1 01000 113578999999999999999998654
No 475
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.84 E-value=0.3 Score=53.67 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=48.3
Q ss_pred eEEEEEEcCCCCcHHH-HHHHHhcCccccccccceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTT-LAREVYNDKAVSDIKFDIKAWVCVSDE-FDVLSISMALLESITCKPCDLKALNEVQVQLQKAL 287 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 287 (1108)
-++|.++|+.|||||| ||+..++ ..... .-..+..++.... ....+-++..++-++.+-.-..+..++...+.. +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar-~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR-YVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 5899999999999996 4444433 22111 2345666765432 234444556666666664444444554444433 2
Q ss_pred CCceEEEEEeCCC
Q 001281 288 DGKKFLLVLDDVW 300 (1108)
Q Consensus 288 ~~kr~LlVlDdv~ 300 (1108)
++. =+|.+|-+.
T Consensus 280 ~~~-d~ILVDTaG 291 (407)
T COG1419 280 RDC-DVILVDTAG 291 (407)
T ss_pred hcC-CEEEEeCCC
Confidence 333 455566653
No 476
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.82 E-value=1.3 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|..|.|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999864
No 477
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.75 E-value=0.9 Score=55.22 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=32.5
Q ss_pred HHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhcc-CCCCcEEEEecCchhhh
Q 001281 282 QLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLA-AAPNSKIIVTTRHSHVA 333 (1108)
Q Consensus 282 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~ 333 (1108)
.+.+.+-.++=+|+||..-+. |.+.-..+...+.. ....+.|+||-|...+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 466777889999999997432 12222334444443 33467888888876543
No 478
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=92.71 E-value=1.2 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||++.++-..
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999988653
No 479
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=0.45 Score=55.84 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHHHHhCCceEEEEEeCCCCCChhhHH-HHHhhhcc-CCCCcEEEEecCchhhh
Q 001281 282 QLQKALDGKKFLLVLDDVWNENYSLWE-DLKAPFLA-AAPNSKIIVTTRHSHVA 333 (1108)
Q Consensus 282 ~l~~~l~~kr~LlVlDdv~~~~~~~~~-~l~~~l~~-~~~gs~iivTtR~~~v~ 333 (1108)
.|.+.|-.++..||||++-+.=..+-+ .+..++.. ....+.|+|+-|-..|.
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~ 667 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR 667 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh
Confidence 467777788999999998432111112 22333432 23477888888876554
No 480
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.68 E-value=0.77 Score=51.92 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeC-CCCCHHHHHHHHHHHhcCC-------CCCccc-----H
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVS-DEFDVLSISMALLESITCK-------PCDLKA-----L 276 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~ 276 (1108)
-..++|+|..|+|||||++.++..... ...++. -+. +...+.+.....+..-+.. ..+.+. .
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC----CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 357899999999999999999886532 112222 233 3355666655555442211 111111 1
Q ss_pred HHHHHHHHHHh--CCceEEEEEeCC
Q 001281 277 NEVQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 277 ~~~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
......+.+++ +++++||++||+
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecch
Confidence 12223344444 578999999999
No 481
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.68 E-value=2.1 Score=40.74 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHhcCCCC------CcccHHHHHHHHHHHhCCceEEEEEeCCCC-CChhhHHHHHhhhc--cCCCCcEEE
Q 001281 254 DVLSISMALLESITCKPC------DLKALNEVQVQLQKALDGKKFLLVLDDVWN-ENYSLWEDLKAPFL--AAAPNSKII 324 (1108)
Q Consensus 254 ~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~--~~~~gs~ii 324 (1108)
+.....+..+.+++.... ....-++-.-.|.+.+...+-+++-|.--- -+...-+.+...+- ....|+..+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlV 201 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEE
Confidence 455667777777766432 222334445567888888999999886411 11122233333222 245788888
Q ss_pred EecCchhhhhhcc
Q 001281 325 VTTRHSHVASTMG 337 (1108)
Q Consensus 325 vTtR~~~v~~~~~ 337 (1108)
..|.++.++..|.
T Consensus 202 lVTHD~~LA~Rc~ 214 (228)
T COG4181 202 LVTHDPQLAARCD 214 (228)
T ss_pred EEeCCHHHHHhhh
Confidence 8888888887764
No 482
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.23 Score=50.03 Aligned_cols=52 Identities=25% Similarity=0.217 Sum_probs=37.2
Q ss_pred CCceeccchhHHHHHHHHhCC----C----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 183 ERAVYGRDDDKAKILDMVLSD----D----PSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~----~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-+++-|=.++++++.+..--+ + -+-+.++-|.++|++|.|||-+|++|+++.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 345667778888777664221 1 012346778899999999999999999964
No 483
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.66 E-value=0.43 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 001281 213 IPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998753
No 484
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.64 E-value=0.086 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...|.++|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
No 485
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.62 E-value=0.17 Score=52.87 Aligned_cols=85 Identities=21% Similarity=0.199 Sum_probs=49.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCC---------------CCC--
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCK---------------PCD-- 272 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~-- 272 (1108)
-.++.|.|.+|+|||++|.++......+ .-..++||+..+.+ .++.+.+- .++.. ...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 4799999999999999998866543221 03457888876554 33333322 22211 000
Q ss_pred ---cccHHHHHHHHHHHhCC-ceEEEEEeCC
Q 001281 273 ---LKALNEVQVQLQKALDG-KKFLLVLDDV 299 (1108)
Q Consensus 273 ---~~~~~~~~~~l~~~l~~-kr~LlVlDdv 299 (1108)
..+.+++...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23456666666665543 3478999986
No 486
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.62 E-value=0.74 Score=50.09 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCcccH-----H
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD-EFDVLSISMALLESITCK-------PCDLKAL-----N 277 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 277 (1108)
..++|+|..|.|||||.+.+..... .+..+..-+.. ..++.++.......-+.. ..+.+.. .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 5789999999999999999987643 23334444443 334555555444432211 1111111 1
Q ss_pred HHHHHHHHHh--CCceEEEEEeCC
Q 001281 278 EVQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 278 ~~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
...-.+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222333444 588999999998
No 487
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.59 E-value=0.081 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
No 488
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.59 E-value=0.16 Score=54.80 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=47.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQLQ 284 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (1108)
-+++-|+|+.|+||||||.++...... .-..++||.....++.. .++.++.... .....++......
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 479999999999999999888875432 23568899988877654 3344444321 1112233333334
Q ss_pred HHhC-CceEEEEEeCC
Q 001281 285 KALD-GKKFLLVLDDV 299 (1108)
Q Consensus 285 ~~l~-~kr~LlVlDdv 299 (1108)
..++ +..-++|+|.|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 4443 34458888887
No 489
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=92.59 E-value=0.82 Score=48.09 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|..|.|||||.+.+....
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999999998653
No 490
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.59 E-value=0.16 Score=47.14 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.+|.+.|.-|+||||+++.++....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998654
No 491
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.59 E-value=0.73 Score=47.01 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHHhCCceEEEEEeCCCCC-ChhhHH-HHHhhhccCCC--CcEEEEecCchhhhhh
Q 001281 282 QLQKALDGKKFLLVLDDVWNE-NYSLWE-DLKAPFLAAAP--NSKIIVTTRHSHVAST 335 (1108)
Q Consensus 282 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~~~--gs~iivTtR~~~v~~~ 335 (1108)
.+.+.+..++-++++|+.... +....+ .+...+..... |..||++|.+......
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 355667788899999997432 223334 44444443222 5678888887766543
No 492
>PRK15453 phosphoribulokinase; Provisional
Probab=92.59 E-value=0.46 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
+..+|+|.|.+|+||||+|+.+...
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988753
No 493
>PLN02348 phosphoribulokinase
Probab=92.56 E-value=0.13 Score=56.67 Aligned_cols=27 Identities=26% Similarity=0.253 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
....+|+|.|.+|.||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998754
No 494
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.56 E-value=0.83 Score=49.53 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC-HHHHHHHH
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD-VLSISMAL 262 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 262 (1108)
++++.+..-.. -..++|.|..|+|||+|++++.+.. .-+.++++-+++..+ +.+++.++
T Consensus 146 rvID~l~Pi~k----Gqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 146 RVLDTLFPVVK----GGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhhccccccC----CCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 45555543322 3578999999999999999999863 345788888876643 44444443
No 495
>PRK14528 adenylate kinase; Provisional
Probab=92.52 E-value=0.23 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998653
No 496
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.52 E-value=0.11 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5899999999999999998876653
No 497
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.31 Score=57.07 Aligned_cols=99 Identities=22% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCccccCCceeccchhHHHHHHHHhCC-------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEE
Q 001281 176 PSSSVRTERAVYGRDDDKAKILDMVLSD-------DPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVC 248 (1108)
Q Consensus 176 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 248 (1108)
|..+.+.=.++-|-++-+.+|.+-+.-+ ..+-.+..-|-++|++|.|||-+|++|+.+... .|
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL---~F------- 733 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL---NF------- 733 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee---eE-------
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCccc------HHHHHHHHHHHhCCceEEEEEeCCCC
Q 001281 249 VSDEFDVLSISMALLESITCKPCDLKA------LNEVQVQLQKALDGKKFLLVLDDVWN 301 (1108)
Q Consensus 249 ~~~~~~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~kr~LlVlDdv~~ 301 (1108)
+....++.-+ .+.+.+...+.=..++|+|.||.+.+
T Consensus 734 -----------------lSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 734 -----------------LSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -----------------EeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccc
No 498
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.46 E-value=0.093 Score=52.70 Aligned_cols=21 Identities=38% Similarity=0.306 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001281 212 VIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998873
No 499
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.44 E-value=0.098 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
++++|+|+.|+||||||+.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999999985
No 500
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.41 E-value=0.13 Score=48.73 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD 251 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 251 (1108)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~--g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR--GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc--CCceEEEEEccC
Confidence 489999999999999999999876533 344444555443
Done!