Query 001281
Match_columns 1108
No_of_seqs 712 out of 4795
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.3E-46 1.1E-50 443.7 22.8 316 187-525 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.4E-38 1.5E-42 372.8 20.2 284 186-516 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-36 6.7E-41 402.7 25.8 312 180-523 120-452 (1249)
4 3rgz_A Protein brassinosteroid 100.0 6.5E-35 2.2E-39 363.6 27.1 461 591-1101 174-723 (768)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-33 7.1E-38 347.5 35.5 171 535-715 22-199 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-33 5.3E-38 343.8 30.6 500 536-1093 30-556 (606)
7 3rgz_A Protein brassinosteroid 100.0 2.7E-34 9.1E-39 358.0 20.9 437 590-1099 95-555 (768)
8 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-32 1.2E-36 336.5 35.8 504 563-1101 25-602 (680)
9 3t6q_A CD180 antigen; protein- 100.0 8E-33 2.7E-37 337.5 28.0 491 563-1100 33-564 (606)
10 1z6t_A APAF-1, apoptotic prote 100.0 4.3E-33 1.5E-37 337.5 24.6 303 183-520 123-449 (591)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-32 8.4E-37 333.3 28.8 485 563-1101 32-539 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.5E-31 1.5E-35 332.5 35.4 504 536-1093 22-558 (844)
13 3t6q_A CD180 antigen; protein- 100.0 1.2E-31 4.1E-36 327.1 29.1 490 534-1070 29-560 (606)
14 2z81_A CD282 antigen, TOLL-lik 100.0 8.3E-32 2.8E-36 324.5 26.2 454 595-1094 26-509 (549)
15 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-30 1.4E-34 323.7 33.9 487 561-1100 22-543 (844)
16 2z63_A TOLL-like receptor 4, v 100.0 1.9E-30 6.5E-35 314.5 27.7 259 803-1093 258-529 (570)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-30 1E-34 308.4 22.2 430 595-1100 21-485 (520)
18 4eco_A Uncharacterized protein 100.0 2.7E-30 9.1E-35 314.1 21.5 291 776-1096 304-633 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 2.4E-29 8E-34 309.5 24.6 294 772-1096 543-873 (876)
20 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-28 3.9E-33 297.0 26.7 456 597-1101 7-491 (549)
21 4eco_A Uncharacterized protein 100.0 2.9E-29 9.9E-34 305.0 18.5 373 605-1071 193-633 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-28 1E-32 293.3 26.5 436 595-1099 52-513 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 1.9E-28 6.5E-33 301.5 25.1 425 595-1099 323-843 (876)
24 2z63_A TOLL-like receptor 4, v 100.0 1.9E-28 6.4E-33 296.9 24.2 456 564-1100 29-511 (570)
25 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-27 1.3E-31 289.9 33.0 507 536-1101 50-585 (635)
26 2z7x_B TOLL-like receptor 1, v 100.0 7.3E-28 2.5E-32 287.7 25.5 434 563-1068 21-479 (520)
27 1jl5_A Outer protein YOPM; leu 99.9 2.1E-26 7.1E-31 266.9 23.3 389 593-1093 9-427 (454)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.4E-26 2.9E-30 271.9 25.8 428 563-1068 52-508 (562)
29 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-24 4.1E-29 267.5 30.9 481 564-1102 53-561 (635)
30 1o6v_A Internalin A; bacterial 99.9 1.3E-24 4.3E-29 254.9 28.8 344 594-1050 45-391 (466)
31 3bz5_A Internalin-J, INLJ; leu 99.9 2.6E-24 8.9E-29 249.5 26.1 186 591-836 38-223 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 1.7E-24 5.9E-29 253.9 23.7 81 596-676 31-114 (455)
33 1jl5_A Outer protein YOPM; leu 99.9 1.4E-24 4.8E-29 251.6 22.1 375 611-1097 5-410 (454)
34 1o6v_A Internalin A; bacterial 99.9 1E-23 3.4E-28 247.2 27.1 321 591-1013 64-386 (466)
35 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-24 1.3E-28 248.1 15.9 226 558-863 37-262 (457)
36 3o6n_A APL1; leucine-rich repe 99.9 6.6E-23 2.3E-27 234.6 23.9 91 593-684 43-135 (390)
37 3v47_A TOLL-like receptor 5B a 99.9 1.3E-23 4.6E-28 246.3 17.7 201 599-841 14-228 (455)
38 4fmz_A Internalin; leucine ric 99.9 2.5E-22 8.5E-27 226.1 23.3 81 592-676 41-121 (347)
39 4fmz_A Internalin; leucine ric 99.9 3.1E-22 1.1E-26 225.4 21.2 104 559-676 40-143 (347)
40 3oja_B Anopheles plasmodium-re 99.9 5.4E-22 1.9E-26 239.8 24.6 88 594-682 50-139 (597)
41 3o6n_A APL1; leucine-rich repe 99.9 1.3E-21 4.3E-26 224.0 19.8 301 561-937 43-350 (390)
42 3oja_B Anopheles plasmodium-re 99.9 2.8E-21 9.4E-26 233.6 20.6 301 561-937 49-356 (597)
43 2id5_A Lingo-1, leucine rich r 99.9 7.4E-21 2.5E-25 224.1 23.6 99 595-694 32-133 (477)
44 2id5_A Lingo-1, leucine rich r 99.9 7.1E-21 2.4E-25 224.3 19.3 292 563-918 32-333 (477)
45 4fcg_A Uncharacterized protein 99.8 9.4E-20 3.2E-24 201.9 20.1 191 593-842 79-270 (328)
46 1xku_A Decorin; proteoglycan, 99.8 2.1E-19 7.2E-24 200.3 22.0 243 596-897 32-276 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 4.6E-19 1.6E-23 197.7 19.8 242 596-897 34-277 (332)
48 1ogq_A PGIP-2, polygalacturona 99.8 5.6E-20 1.9E-24 202.6 10.4 229 588-866 69-302 (313)
49 3ogk_B Coronatine-insensitive 99.8 7.4E-21 2.5E-25 231.2 2.9 206 587-833 104-326 (592)
50 2ft3_A Biglycan; proteoglycan, 99.8 7.8E-19 2.7E-23 195.8 18.4 244 595-866 54-305 (332)
51 1ogq_A PGIP-2, polygalacturona 99.8 8E-20 2.7E-24 201.3 9.3 248 595-896 50-304 (313)
52 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-17 3.9E-22 199.1 26.7 176 882-1093 120-295 (622)
53 3g06_A SSPH2 (leucine-rich rep 99.8 8.5E-18 2.9E-22 200.3 24.9 79 595-683 40-118 (622)
54 4fcg_A Uncharacterized protein 99.8 2.8E-18 9.5E-23 190.1 18.9 218 616-903 79-296 (328)
55 1xku_A Decorin; proteoglycan, 99.8 2.5E-18 8.7E-23 191.5 18.6 215 595-836 52-274 (330)
56 3ogk_B Coronatine-insensitive 99.8 7.3E-20 2.5E-24 222.4 3.9 425 588-1091 66-547 (592)
57 2p1m_B Transport inhibitor res 99.7 6.6E-20 2.3E-24 223.0 -6.4 418 591-1092 62-541 (594)
58 3zyi_A Leucine-rich repeat-con 99.7 1.3E-16 4.6E-21 185.8 18.4 86 595-682 75-163 (452)
59 3zyj_A Leucine-rich repeat-con 99.7 2E-16 6.8E-21 183.6 19.3 80 596-676 65-147 (440)
60 2z80_A TOLL-like receptor 2, v 99.7 5.8E-17 2E-21 182.3 14.4 250 595-918 52-314 (353)
61 3o53_A Protein LRIM1, AGAP0063 99.7 2.8E-18 9.6E-23 189.5 2.9 258 585-903 24-282 (317)
62 1z7x_W Ribonuclease inhibitor; 99.7 4.1E-20 1.4E-24 217.1 -13.0 36 979-1014 369-410 (461)
63 2z66_A Variable lymphocyte rec 99.7 5.1E-17 1.7E-21 178.9 12.6 86 590-676 47-137 (306)
64 2z80_A TOLL-like receptor 2, v 99.7 4.9E-17 1.7E-21 182.9 12.4 248 563-836 52-312 (353)
65 2z66_A Variable lymphocyte rec 99.7 9.2E-17 3.1E-21 176.8 13.0 99 595-695 28-132 (306)
66 2p1m_B Transport inhibitor res 99.7 8.3E-19 2.8E-23 213.3 -4.1 233 588-864 98-347 (594)
67 3zyj_A Leucine-rich repeat-con 99.7 1.3E-15 4.4E-20 176.8 22.7 236 779-1093 45-290 (440)
68 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-19 3.8E-24 213.4 -12.1 362 589-992 22-439 (461)
69 3o53_A Protein LRIM1, AGAP0063 99.7 1.5E-17 5E-22 183.8 4.1 236 801-1074 33-279 (317)
70 3zyi_A Leucine-rich repeat-con 99.7 2.4E-16 8.2E-21 183.7 13.7 221 563-836 75-301 (452)
71 1ozn_A Reticulon 4 receptor; N 99.7 9.8E-17 3.4E-21 174.5 9.2 200 595-837 32-237 (285)
72 1wwl_A Monocyte differentiatio 99.6 3E-16 1E-20 172.8 11.2 203 593-836 93-307 (312)
73 3oja_A Leucine-rich immune mol 99.6 6.5E-17 2.2E-21 189.2 6.1 230 801-1090 33-270 (487)
74 1ozn_A Reticulon 4 receptor; N 99.6 8.9E-16 3.1E-20 166.9 14.4 220 597-866 13-236 (285)
75 1wwl_A Monocyte differentiatio 99.6 5.6E-17 1.9E-21 178.7 2.6 62 774-836 198-264 (312)
76 1p9a_G Platelet glycoprotein I 99.6 2.9E-15 9.9E-20 162.4 15.4 200 591-836 6-206 (290)
77 1w5s_A Origin recognition comp 99.6 4.8E-15 1.6E-19 170.8 17.1 315 183-512 21-387 (412)
78 2qen_A Walker-type ATPase; unk 99.6 3E-14 1E-18 160.3 23.0 291 182-517 10-349 (350)
79 3oja_A Leucine-rich immune mol 99.6 1.1E-15 3.7E-20 178.9 11.1 242 592-895 31-274 (487)
80 3rfs_A Internalin B, repeat mo 99.6 3.7E-15 1.3E-19 160.5 14.0 87 592-682 38-125 (272)
81 1h6u_A Internalin H; cell adhe 99.6 2.6E-15 9E-20 164.6 11.4 190 593-836 39-228 (308)
82 2o6q_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 155.2 17.3 196 596-836 17-216 (270)
83 2z62_A TOLL-like receptor 4, v 99.6 3.6E-15 1.2E-19 161.2 12.1 202 595-836 28-235 (276)
84 3qfl_A MLA10; coiled-coil, (CC 99.6 2.3E-15 7.8E-20 134.8 6.3 79 13-94 3-83 (115)
85 2xwt_C Thyrotropin receptor; s 99.5 7.8E-14 2.7E-18 147.0 17.9 85 999-1095 152-239 (239)
86 4ay9_X Follicle-stimulating ho 99.5 1.1E-13 3.9E-18 154.8 19.6 219 598-869 12-237 (350)
87 2fna_A Conserved hypothetical 99.5 1.8E-13 6E-18 154.4 21.0 291 182-516 11-356 (357)
88 2xwt_C Thyrotropin receptor; s 99.5 1.1E-14 3.8E-19 153.5 10.2 197 596-866 32-237 (239)
89 1p9a_G Platelet glycoprotein I 99.5 1.8E-13 6.1E-18 148.3 18.8 192 879-1093 6-206 (290)
90 2o6q_A Variable lymphocyte rec 99.5 4.4E-13 1.5E-17 144.0 21.0 190 883-1093 16-216 (270)
91 2ast_B S-phase kinase-associat 99.5 1.1E-15 3.7E-20 170.9 0.1 232 595-905 70-314 (336)
92 2z62_A TOLL-like receptor 4, v 99.5 5.8E-14 2E-18 151.7 13.6 94 599-695 11-106 (276)
93 4glp_A Monocyte differentiatio 99.5 5.1E-14 1.7E-18 154.8 12.6 204 594-836 90-305 (310)
94 4ay9_X Follicle-stimulating ho 99.5 6.6E-13 2.3E-17 148.6 21.2 232 780-1065 12-254 (350)
95 1h6u_A Internalin H; cell adhe 99.5 2E-13 6.9E-18 149.5 16.0 146 923-1092 82-227 (308)
96 3m19_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 143.1 16.4 173 595-836 14-190 (251)
97 1h6t_A Internalin B; cell adhe 99.4 2.7E-13 9.3E-18 147.1 11.8 169 592-836 43-211 (291)
98 3rfs_A Internalin B, repeat mo 99.4 1.4E-12 4.8E-17 140.2 16.0 169 879-1067 37-215 (272)
99 4glp_A Monocyte differentiatio 99.4 4.8E-13 1.6E-17 147.0 11.4 193 882-1093 90-305 (310)
100 2ca6_A RAN GTPase-activating p 99.4 1.6E-14 5.6E-19 164.4 -2.2 89 588-676 25-133 (386)
101 1m9s_A Internalin B; cell inva 99.4 8.2E-13 2.8E-17 157.3 11.6 97 592-694 40-136 (605)
102 2ast_B S-phase kinase-associat 99.4 6E-14 2E-18 156.7 1.5 123 563-694 70-200 (336)
103 2ca6_A RAN GTPase-activating p 99.4 4.2E-14 1.4E-18 161.1 -0.3 244 558-837 27-315 (386)
104 3m19_A Variable lymphocyte rec 99.4 9E-12 3.1E-16 132.1 16.9 169 883-1093 14-190 (251)
105 3cvr_A Invasion plasmid antige 99.4 1.5E-12 5.2E-17 153.0 11.6 182 596-843 60-248 (571)
106 2qby_B CDC6 homolog 3, cell di 99.3 3.5E-11 1.2E-15 136.9 21.7 297 183-499 19-339 (384)
107 1xeu_A Internalin C; cellular 99.3 1.2E-12 4E-17 139.6 7.9 167 593-836 17-183 (263)
108 2v1u_A Cell division control p 99.3 6.2E-11 2.1E-15 135.1 22.8 298 183-499 18-351 (387)
109 1h6t_A Internalin B; cell adhe 99.3 7.4E-12 2.5E-16 135.7 13.0 172 879-1075 42-217 (291)
110 3cvr_A Invasion plasmid antige 99.3 2E-11 7E-16 143.4 17.4 174 884-1093 60-241 (571)
111 1fnn_A CDC6P, cell division co 99.3 3.6E-10 1.2E-14 128.8 26.6 297 184-500 17-352 (389)
112 4ezg_A Putative uncharacterize 99.3 1.4E-11 4.9E-16 125.0 12.4 105 978-1093 86-192 (197)
113 2v9t_B SLIT homolog 2 protein 99.3 1.6E-11 5.3E-16 127.0 12.8 83 598-683 14-97 (220)
114 4ezg_A Putative uncharacterize 99.3 4.6E-12 1.6E-16 128.7 8.1 98 595-694 44-141 (197)
115 3e6j_A Variable lymphocyte rec 99.3 3.5E-11 1.2E-15 125.2 14.9 82 597-682 21-104 (229)
116 3goz_A Leucine-rich repeat-con 99.3 8.6E-13 2.9E-17 148.5 2.2 213 586-836 13-264 (362)
117 2qby_A CDC6 homolog 1, cell di 99.3 7.9E-11 2.7E-15 134.1 18.3 298 183-499 19-348 (386)
118 2o6s_A Variable lymphocyte rec 99.3 1.6E-11 5.4E-16 126.1 11.1 81 598-682 10-92 (208)
119 1m9s_A Internalin B; cell inva 99.3 1.4E-11 4.8E-16 146.6 12.0 172 879-1075 39-214 (605)
120 2xot_A Amphoterin-induced prot 99.2 1.3E-11 4.6E-16 138.5 9.4 171 598-836 21-200 (361)
121 3goz_A Leucine-rich repeat-con 99.2 1.7E-12 5.7E-17 146.1 1.2 232 562-836 21-295 (362)
122 2o6s_A Variable lymphocyte rec 99.2 2.1E-11 7.1E-16 125.2 8.6 98 595-694 28-129 (208)
123 2v9t_B SLIT homolog 2 protein 99.2 4.7E-11 1.6E-15 123.3 10.5 124 563-695 32-158 (220)
124 1xeu_A Internalin C; cellular 99.2 4.4E-11 1.5E-15 127.3 9.8 153 591-794 37-189 (263)
125 2ell_A Acidic leucine-rich nuc 99.2 3.9E-11 1.3E-15 118.3 8.8 99 594-694 23-125 (168)
126 1njg_A DNA polymerase III subu 99.2 4.2E-10 1.4E-14 119.2 16.7 197 184-398 23-231 (250)
127 1dce_A Protein (RAB geranylger 99.2 5E-13 1.7E-17 158.2 -6.7 196 592-861 346-566 (567)
128 2ell_A Acidic leucine-rich nuc 99.2 6.6E-11 2.3E-15 116.7 9.4 125 563-697 24-155 (168)
129 2v70_A SLIT-2, SLIT homolog 2 99.2 9E-11 3.1E-15 121.2 10.7 75 599-676 15-92 (220)
130 3e6j_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 117.9 14.9 84 1000-1093 86-170 (229)
131 2v70_A SLIT-2, SLIT homolog 2 99.1 1.5E-10 5E-15 119.6 11.3 123 564-695 33-159 (220)
132 2je0_A Acidic leucine-rich nuc 99.1 3.6E-11 1.2E-15 115.9 6.0 123 563-695 17-146 (149)
133 1a9n_A U2A', U2A'; complex (nu 99.1 9.7E-11 3.3E-15 116.4 7.7 127 558-696 14-147 (176)
134 2xot_A Amphoterin-induced prot 99.1 2.4E-10 8.2E-15 128.2 11.3 169 886-1093 21-200 (361)
135 2chg_A Replication factor C sm 99.1 2.6E-09 8.9E-14 111.1 18.0 187 183-395 16-204 (226)
136 2je0_A Acidic leucine-rich nuc 99.1 8.1E-11 2.8E-15 113.4 5.4 101 593-695 15-119 (149)
137 4b8c_D Glucose-repressible alc 99.0 2.6E-10 9E-15 139.5 8.9 108 586-695 215-322 (727)
138 2wfh_A SLIT homolog 2 protein 99.0 7.6E-10 2.6E-14 111.4 10.2 81 596-676 32-113 (193)
139 1w8a_A SLIT protein; signaling 99.0 5.2E-10 1.8E-14 112.8 8.9 94 598-694 11-107 (192)
140 1hqc_A RUVB; extended AAA-ATPa 99.0 1.7E-09 5.8E-14 119.6 13.5 269 183-498 11-324 (324)
141 2wfh_A SLIT homolog 2 protein 99.0 1.1E-09 3.6E-14 110.4 10.4 104 563-676 31-137 (193)
142 1dce_A Protein (RAB geranylger 99.0 7E-10 2.4E-14 131.2 9.5 91 591-684 459-551 (567)
143 4b8c_D Glucose-repressible alc 99.0 9.2E-11 3.2E-15 143.5 1.9 120 557-686 218-337 (727)
144 1w8a_A SLIT protein; signaling 98.9 1.3E-09 4.5E-14 109.8 9.0 100 596-695 30-132 (192)
145 1a9n_A U2A', U2A'; complex (nu 98.9 7.5E-10 2.6E-14 109.9 6.7 101 591-695 15-119 (176)
146 1sxj_B Activator 1 37 kDa subu 98.9 1.1E-08 3.7E-13 113.1 14.5 188 183-396 20-211 (323)
147 1ds9_A Outer arm dynein; leuci 98.9 8E-11 2.7E-15 119.6 -3.3 101 590-694 43-145 (198)
148 3sb4_A Hypothetical leucine ri 98.9 8.6E-09 2.9E-13 113.9 12.8 95 594-694 48-153 (329)
149 1ds9_A Outer arm dynein; leuci 98.8 1.5E-10 5.2E-15 117.5 -2.5 127 558-696 43-181 (198)
150 3g39_A Variable lymphocyte rec 98.8 8.3E-09 2.8E-13 101.4 9.3 93 598-694 12-107 (170)
151 2r9u_A Variable lymphocyte rec 98.8 9.2E-09 3.1E-13 101.4 9.3 81 595-676 33-116 (174)
152 2o6r_A Variable lymphocyte rec 98.8 9.9E-09 3.4E-13 101.9 9.0 98 595-694 28-129 (177)
153 2o6r_A Variable lymphocyte rec 98.8 1.4E-08 4.8E-13 100.8 10.0 106 562-676 27-135 (177)
154 2r9u_A Variable lymphocyte rec 98.8 8.7E-09 3E-13 101.6 7.6 95 598-696 15-112 (174)
155 3sb4_A Hypothetical leucine ri 98.7 1.6E-08 5.4E-13 111.8 8.7 91 1001-1104 225-318 (329)
156 3g39_A Variable lymphocyte rec 98.7 3.2E-08 1.1E-12 97.2 8.9 86 595-682 30-118 (170)
157 1iqp_A RFCS; clamp loader, ext 98.7 1.3E-07 4.6E-12 104.4 14.6 185 184-397 25-214 (327)
158 4fdw_A Leucine rich hypothetic 98.6 2.9E-06 9.9E-11 95.6 22.7 189 878-1091 175-379 (401)
159 1jr3_A DNA polymerase III subu 98.5 1E-06 3.6E-11 99.2 15.7 195 184-395 16-221 (373)
160 2ifg_A High affinity nerve gro 98.5 2E-07 6.7E-12 104.0 8.6 85 591-676 27-114 (347)
161 3te6_A Regulatory protein SIR3 98.4 1.5E-06 5.2E-11 92.8 13.5 173 185-361 21-212 (318)
162 2chq_A Replication factor C sm 98.4 1.4E-06 4.9E-11 95.6 13.9 183 183-394 16-203 (319)
163 4fs7_A Uncharacterized protein 98.4 4.2E-06 1.4E-10 94.8 18.1 209 853-1091 160-375 (394)
164 3pfi_A Holliday junction ATP-d 98.4 3.8E-06 1.3E-10 93.0 17.1 179 183-395 28-227 (338)
165 4fdw_A Leucine rich hypothetic 98.4 2.5E-06 8.4E-11 96.2 15.4 100 588-694 129-231 (401)
166 4fs7_A Uncharacterized protein 98.4 4.1E-06 1.4E-10 94.9 17.0 329 699-1087 59-393 (394)
167 2ifg_A High affinity nerve gro 98.3 7.4E-07 2.5E-11 99.3 8.6 95 599-695 12-109 (347)
168 3bos_A Putative DNA replicatio 98.3 1.7E-06 5.9E-11 90.6 9.4 174 184-395 28-217 (242)
169 3e4g_A ATP synthase subunit S, 98.3 3.5E-07 1.2E-11 87.9 3.3 88 1003-1097 62-154 (176)
170 1sxj_D Activator 1 41 kDa subu 98.3 8.3E-06 2.8E-10 91.0 15.1 195 183-394 36-234 (353)
171 1jbk_A CLPB protein; beta barr 98.2 2.6E-06 8.9E-11 85.7 9.4 46 184-234 22-67 (195)
172 3h4m_A Proteasome-activating n 98.2 2.2E-05 7.6E-10 84.4 16.0 184 183-393 16-229 (285)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3E-05 1E-09 82.2 15.8 186 184-394 6-221 (262)
174 1sxj_A Activator 1 95 kDa subu 98.1 1.8E-05 6E-10 92.5 14.5 197 183-396 38-254 (516)
175 3pvs_A Replication-associated 98.1 3.1E-05 1E-09 88.0 15.5 181 183-394 25-214 (447)
176 3u61_B DNA polymerase accessor 98.1 3.8E-05 1.3E-09 84.2 15.9 175 183-391 25-212 (324)
177 2ra8_A Uncharacterized protein 98.1 1.6E-06 5.5E-11 95.7 4.7 60 1000-1067 250-317 (362)
178 2z4s_A Chromosomal replication 98.1 2.7E-05 9.1E-10 88.7 14.4 162 210-392 130-303 (440)
179 1sxj_E Activator 1 40 kDa subu 98.1 3.4E-05 1.1E-09 86.0 15.1 197 183-395 13-237 (354)
180 3un9_A NLR family member X1; l 98.1 4.2E-07 1.4E-11 101.4 -0.5 82 595-676 72-166 (372)
181 3uk6_A RUVB-like 2; hexameric 98.1 1.8E-05 6E-10 88.8 12.7 195 183-393 43-301 (368)
182 4gt6_A Cell surface protein; l 98.0 0.00042 1.4E-08 78.2 22.5 107 972-1091 257-366 (394)
183 3e4g_A ATP synthase subunit S, 98.0 5E-06 1.7E-10 79.9 5.0 85 981-1072 62-154 (176)
184 1d2n_A N-ethylmaleimide-sensit 97.9 0.00014 4.9E-09 77.2 16.5 195 185-412 34-259 (272)
185 1a5t_A Delta prime, HOLB; zinc 97.9 0.00015 5E-09 79.6 16.8 171 190-394 8-204 (334)
186 3eie_A Vacuolar protein sortin 97.8 0.00028 9.5E-09 77.0 16.9 186 183-395 17-228 (322)
187 3syl_A Protein CBBX; photosynt 97.8 0.00014 4.8E-09 79.1 14.3 158 185-361 32-218 (309)
188 1sxj_C Activator 1 40 kDa subu 97.8 0.00026 8.7E-09 78.1 16.1 178 184-391 25-208 (340)
189 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00077 2.6E-08 73.2 19.0 189 183-396 11-224 (322)
190 3d8b_A Fidgetin-like protein 1 97.8 0.00037 1.3E-08 77.1 16.7 187 183-396 83-296 (357)
191 3un9_A NLR family member X1; l 97.8 1.1E-05 3.8E-10 89.8 4.3 84 593-676 153-250 (372)
192 3b9p_A CG5977-PA, isoform A; A 97.8 0.00077 2.6E-08 72.7 18.8 184 183-395 20-233 (297)
193 2p65_A Hypothetical protein PF 97.8 2.7E-05 9.2E-10 77.6 6.6 46 184-234 22-67 (187)
194 1l8q_A Chromosomal replication 97.8 0.00023 7.8E-09 77.9 14.4 154 210-389 37-202 (324)
195 3n70_A Transport activator; si 97.7 4.5E-05 1.5E-09 72.1 7.1 114 185-329 2-115 (145)
196 4h09_A Hypothetical leucine ri 97.7 0.0018 6.1E-08 72.6 21.4 56 773-834 65-122 (379)
197 2qp9_X Vacuolar protein sortin 97.7 0.00046 1.6E-08 76.2 15.9 187 183-395 50-261 (355)
198 3ec2_A DNA replication protein 97.7 7.6E-05 2.6E-09 73.7 8.5 121 189-329 19-142 (180)
199 3rw6_A Nuclear RNA export fact 97.7 2.8E-05 9.6E-10 81.0 5.4 79 592-671 167-257 (267)
200 2ra8_A Uncharacterized protein 97.6 2.8E-05 9.4E-10 85.8 4.6 59 613-673 167-227 (362)
201 3cf0_A Transitional endoplasmi 97.6 0.00083 2.8E-08 72.3 15.7 181 183-390 14-223 (301)
202 1in4_A RUVB, holliday junction 97.6 0.0024 8.2E-08 69.8 19.4 178 183-394 24-222 (334)
203 3vfd_A Spastin; ATPase, microt 97.6 0.0013 4.6E-08 73.7 17.3 188 182-395 113-326 (389)
204 2zan_A Vacuolar protein sortin 97.6 0.001 3.5E-08 75.8 16.4 188 183-395 133-345 (444)
205 1io0_A Tropomodulin; LRR prote 97.5 7.1E-05 2.4E-09 74.1 5.6 114 559-676 32-162 (185)
206 2gno_A DNA polymerase III, gam 97.5 0.00043 1.5E-08 74.1 12.1 149 188-360 1-152 (305)
207 3rw6_A Nuclear RNA export fact 97.5 2.6E-05 9E-10 81.2 2.1 104 592-697 138-259 (267)
208 4gt6_A Cell surface protein; l 97.5 0.005 1.7E-07 69.3 21.0 274 803-1103 65-353 (394)
209 4b4t_J 26S protease regulatory 97.5 0.0012 4.1E-08 72.3 14.9 179 183-388 147-354 (405)
210 2w58_A DNAI, primosome compone 97.4 7.1E-05 2.4E-09 75.6 4.4 125 185-329 26-158 (202)
211 3co5_A Putative two-component 97.4 0.00022 7.5E-09 67.1 7.4 110 185-329 5-115 (143)
212 3hu3_A Transitional endoplasmi 97.4 0.00082 2.8E-08 77.0 13.4 184 184-394 204-414 (489)
213 1io0_A Tropomodulin; LRR prote 97.4 5.8E-05 2E-09 74.8 2.5 92 585-676 26-134 (185)
214 4b4t_L 26S protease subunit RP 97.3 0.0015 5.3E-08 72.7 13.8 179 183-388 180-387 (437)
215 4fcw_A Chaperone protein CLPB; 97.3 0.00065 2.2E-08 73.8 10.6 135 185-329 18-169 (311)
216 3pxg_A Negative regulator of g 97.3 0.00052 1.8E-08 78.8 10.1 149 184-361 180-339 (468)
217 1ofh_A ATP-dependent HSL prote 97.3 0.0017 5.8E-08 70.5 13.3 51 184-234 15-74 (310)
218 1lv7_A FTSH; alpha/beta domain 97.3 0.0054 1.8E-07 64.3 16.7 183 183-392 11-222 (257)
219 2kjq_A DNAA-related protein; s 97.3 0.0002 6.8E-09 67.7 5.0 87 210-329 36-124 (149)
220 4h09_A Hypothetical leucine ri 97.3 0.02 6.8E-07 64.0 22.4 138 943-1103 212-352 (379)
221 4b4t_M 26S protease regulatory 97.3 0.0011 3.6E-08 74.0 11.5 177 183-387 180-386 (434)
222 4b4t_H 26S protease regulatory 97.3 0.0028 9.7E-08 70.3 14.5 177 184-387 209-414 (467)
223 1qvr_A CLPB protein; coiled co 97.2 0.00077 2.6E-08 83.9 11.3 156 183-359 169-344 (854)
224 4b4t_K 26S protease regulatory 97.2 0.0024 8.2E-08 71.1 13.4 53 183-235 171-231 (428)
225 2c9o_A RUVB-like 1; hexameric 97.2 0.0014 4.8E-08 75.1 11.5 93 292-393 297-408 (456)
226 2ce7_A Cell division protein F 97.2 0.0033 1.1E-07 71.3 14.1 179 183-388 15-221 (476)
227 2bjv_A PSP operon transcriptio 97.1 0.0012 4E-08 69.8 9.5 133 184-329 6-150 (265)
228 4b4t_I 26S protease regulatory 97.1 0.0032 1.1E-07 69.1 12.3 177 183-387 181-387 (437)
229 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0046 1.6E-07 76.2 15.0 157 184-360 186-362 (758)
230 3cf2_A TER ATPase, transitiona 97.0 0.0061 2.1E-07 73.3 15.3 179 183-388 203-407 (806)
231 1ojl_A Transcriptional regulat 97.0 0.00099 3.4E-08 71.6 7.6 133 184-329 2-146 (304)
232 3pxi_A Negative regulator of g 97.0 0.0015 5E-08 80.4 10.1 149 184-360 180-338 (758)
233 2r62_A Cell division protease 96.9 0.00026 8.9E-09 75.1 2.2 52 183-234 10-68 (268)
234 3pxi_A Negative regulator of g 96.9 0.00073 2.5E-08 83.2 6.2 154 184-359 491-674 (758)
235 2cvh_A DNA repair and recombin 96.8 0.0068 2.3E-07 61.7 11.8 85 210-301 20-116 (220)
236 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0034 1.2E-07 77.4 9.2 134 184-329 458-607 (758)
237 2r44_A Uncharacterized protein 96.5 0.021 7.3E-07 62.3 14.1 152 184-361 27-199 (331)
238 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.022 7.6E-07 65.1 14.4 43 185-234 23-65 (500)
239 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0019 6.4E-08 68.1 3.5 67 211-300 124-192 (331)
240 3m6a_A ATP-dependent protease 96.3 0.015 5E-07 67.9 11.5 161 184-360 81-266 (543)
241 2qgz_A Helicase loader, putati 96.1 0.0027 9.3E-08 68.2 3.7 43 191-235 135-177 (308)
242 2x8a_A Nuclear valosin-contain 96.1 0.082 2.8E-06 55.5 15.1 155 184-360 10-191 (274)
243 3t15_A Ribulose bisphosphate c 96.1 0.021 7.1E-07 60.9 10.3 26 209-234 35-60 (293)
244 1ypw_A Transitional endoplasmi 96.0 0.027 9.2E-07 69.1 12.5 158 183-361 203-386 (806)
245 1qvr_A CLPB protein; coiled co 96.0 0.01 3.5E-07 73.7 8.9 135 184-329 558-710 (854)
246 2dhr_A FTSH; AAA+ protein, hex 95.9 0.068 2.3E-06 61.0 14.3 175 183-388 30-236 (499)
247 1ixz_A ATP-dependent metallopr 95.9 0.046 1.6E-06 56.9 11.8 52 183-234 15-73 (254)
248 1n0w_A DNA repair protein RAD5 95.8 0.021 7.3E-07 59.0 8.9 89 211-300 25-129 (243)
249 1iy2_A ATP-dependent metallopr 95.8 0.05 1.7E-06 57.5 11.7 52 183-234 39-97 (278)
250 2b8t_A Thymidine kinase; deoxy 95.7 0.0068 2.3E-07 61.0 4.1 113 210-331 12-127 (223)
251 1ye8_A Protein THEP1, hypothet 95.6 0.045 1.6E-06 53.1 9.8 24 212-235 2-25 (178)
252 3hr8_A Protein RECA; alpha and 95.5 0.019 6.5E-07 62.3 7.3 83 210-300 61-149 (356)
253 1um8_A ATP-dependent CLP prote 95.5 0.059 2E-06 59.9 11.6 24 211-234 73-96 (376)
254 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.025 8.5E-07 58.1 7.6 114 211-330 24-168 (235)
255 3io5_A Recombination and repai 95.3 0.036 1.2E-06 58.2 8.1 84 211-300 29-121 (333)
256 1g5t_A COB(I)alamin adenosyltr 95.3 0.018 6E-07 56.1 5.3 113 211-330 29-163 (196)
257 3lw7_A Adenylate kinase relate 95.3 0.069 2.3E-06 51.8 9.9 20 211-230 2-21 (179)
258 1jr3_D DNA polymerase III, del 95.2 0.15 5.2E-06 55.7 13.4 156 210-393 18-183 (343)
259 2z43_A DNA repair and recombin 95.1 0.054 1.8E-06 58.6 9.2 58 210-268 107-167 (324)
260 2i1q_A DNA repair and recombin 95.0 0.056 1.9E-06 58.5 9.1 58 210-268 98-168 (322)
261 1v5w_A DMC1, meiotic recombina 95.0 0.082 2.8E-06 57.6 10.3 57 210-267 122-181 (343)
262 3rfe_A Platelet glycoprotein I 94.9 0.026 8.8E-07 51.5 5.1 53 598-652 11-66 (130)
263 1xp8_A RECA protein, recombina 94.9 0.042 1.4E-06 60.1 7.7 82 210-299 74-161 (366)
264 2p5t_B PEZT; postsegregational 94.8 0.029 9.9E-07 58.3 6.0 42 192-233 14-55 (253)
265 1pzn_A RAD51, DNA repair and r 94.8 0.1 3.5E-06 56.9 10.4 89 210-300 131-241 (349)
266 2cbz_A Multidrug resistance-as 94.7 0.22 7.5E-06 50.9 12.1 24 211-234 32-55 (237)
267 1rz3_A Hypothetical protein rb 94.7 0.03 1E-06 55.9 5.5 43 189-233 3-45 (201)
268 2px0_A Flagellar biosynthesis 94.7 0.048 1.6E-06 57.9 7.3 86 210-299 105-191 (296)
269 3ice_A Transcription terminati 94.6 0.019 6.6E-07 61.7 3.9 98 194-299 162-270 (422)
270 2ff7_A Alpha-hemolysin translo 94.6 0.19 6.4E-06 51.7 11.3 24 211-234 36-59 (247)
271 2zr9_A Protein RECA, recombina 94.5 0.05 1.7E-06 59.2 7.1 82 210-299 61-148 (349)
272 1cr0_A DNA primase/helicase; R 94.5 0.088 3E-06 56.2 8.9 38 211-250 36-73 (296)
273 2pze_A Cystic fibrosis transme 94.4 0.37 1.3E-05 48.8 13.1 25 211-235 35-59 (229)
274 1gvn_B Zeta; postsegregational 94.3 0.036 1.2E-06 58.7 5.2 42 192-233 15-56 (287)
275 3rfe_A Platelet glycoprotein I 94.3 0.039 1.4E-06 50.3 4.8 36 1057-1093 31-66 (130)
276 3cf2_A TER ATPase, transitiona 94.3 0.21 7.1E-06 60.2 12.2 53 183-235 476-536 (806)
277 3c8u_A Fructokinase; YP_612366 94.1 0.035 1.2E-06 55.7 4.4 40 192-234 7-46 (208)
278 1u94_A RECA protein, recombina 94.1 0.06 2.1E-06 58.6 6.5 82 210-299 63-150 (356)
279 1odf_A YGR205W, hypothetical 3 94.0 0.17 6E-06 53.3 9.7 27 208-234 29-55 (290)
280 3tqc_A Pantothenate kinase; bi 93.9 0.13 4.5E-06 54.8 8.7 47 186-233 69-115 (321)
281 2orw_A Thymidine kinase; TMTK, 93.9 0.012 4E-07 57.7 0.4 108 211-330 4-113 (184)
282 3dm5_A SRP54, signal recogniti 93.9 0.29 9.8E-06 54.5 11.5 25 210-234 100-124 (443)
283 1qhx_A CPT, protein (chloramph 93.8 0.026 9E-07 55.0 2.7 24 211-234 4-27 (178)
284 1zp6_A Hypothetical protein AT 93.5 0.041 1.4E-06 54.4 3.6 24 210-233 9-32 (191)
285 3kb2_A SPBC2 prophage-derived 93.4 0.032 1.1E-06 54.0 2.7 23 211-233 2-24 (173)
286 2dr3_A UPF0273 protein PH0284; 93.4 0.14 4.8E-06 52.8 7.8 38 211-251 24-61 (247)
287 3nh6_A ATP-binding cassette SU 93.4 0.18 6E-06 53.5 8.4 24 211-234 81-104 (306)
288 3tui_C Methionine import ATP-b 93.3 0.54 1.8E-05 50.9 12.2 55 281-335 172-229 (366)
289 1ex7_A Guanylate kinase; subst 93.2 0.03 1E-06 54.5 2.0 23 211-233 2-24 (186)
290 1ly1_A Polynucleotide kinase; 93.2 0.043 1.5E-06 53.6 3.2 22 211-232 3-24 (181)
291 3vaa_A Shikimate kinase, SK; s 93.2 0.04 1.4E-06 54.8 2.9 24 211-234 26-49 (199)
292 3uie_A Adenylyl-sulfate kinase 93.2 0.051 1.7E-06 54.1 3.7 25 210-234 25-49 (200)
293 3kl4_A SRP54, signal recogniti 93.1 0.31 1E-05 54.3 10.2 88 210-300 97-189 (433)
294 1vma_A Cell division protein F 93.1 0.18 6E-06 53.6 7.9 88 209-300 103-196 (306)
295 1kgd_A CASK, peripheral plasma 93.1 0.048 1.6E-06 53.2 3.3 24 211-234 6-29 (180)
296 1kag_A SKI, shikimate kinase I 92.9 0.041 1.4E-06 53.3 2.4 23 211-233 5-27 (173)
297 3trf_A Shikimate kinase, SK; a 92.8 0.046 1.6E-06 53.6 2.8 25 210-234 5-29 (185)
298 3bh0_A DNAB-like replicative h 92.7 0.66 2.3E-05 49.7 12.0 50 211-265 69-118 (315)
299 2rhm_A Putative kinase; P-loop 92.6 0.062 2.1E-06 53.1 3.4 24 210-233 5-28 (193)
300 1sky_E F1-ATPase, F1-ATP synth 92.6 0.24 8.1E-06 55.3 8.3 87 211-299 152-254 (473)
301 1knq_A Gluconate kinase; ALFA/ 92.6 0.077 2.6E-06 51.4 4.0 24 210-233 8-31 (175)
302 4gp7_A Metallophosphoesterase; 92.6 0.064 2.2E-06 51.8 3.3 23 210-232 9-31 (171)
303 4eun_A Thermoresistant glucoki 92.5 0.059 2E-06 53.6 3.1 24 210-233 29-52 (200)
304 3tau_A Guanylate kinase, GMP k 92.5 0.062 2.1E-06 53.9 3.3 25 210-234 8-32 (208)
305 3jvv_A Twitching mobility prot 92.5 0.067 2.3E-06 58.3 3.7 110 211-333 124-234 (356)
306 1nks_A Adenylate kinase; therm 92.4 0.062 2.1E-06 53.1 3.2 24 211-234 2-25 (194)
307 3sr0_A Adenylate kinase; phosp 92.4 0.3 1E-05 48.5 8.1 23 212-234 2-24 (206)
308 3hws_A ATP-dependent CLP prote 92.4 0.089 3E-06 58.1 4.7 50 185-234 16-75 (363)
309 3lda_A DNA repair protein RAD5 92.4 0.28 9.5E-06 54.2 8.6 58 210-268 178-238 (400)
310 2bdt_A BH3686; alpha-beta prot 92.4 0.07 2.4E-06 52.5 3.4 22 211-232 3-24 (189)
311 2xxa_A Signal recognition part 92.4 0.39 1.3E-05 53.8 9.8 28 208-235 98-125 (433)
312 4a1f_A DNAB helicase, replicat 92.4 0.22 7.4E-06 53.6 7.4 51 211-266 47-97 (338)
313 3t61_A Gluconokinase; PSI-biol 92.2 0.053 1.8E-06 54.1 2.4 24 210-233 18-41 (202)
314 3a00_A Guanylate kinase, GMP k 92.2 0.055 1.9E-06 53.1 2.4 24 211-234 2-25 (186)
315 3tr0_A Guanylate kinase, GMP k 92.2 0.07 2.4E-06 53.3 3.2 23 211-233 8-30 (205)
316 2qt1_A Nicotinamide riboside k 92.2 0.085 2.9E-06 52.8 3.8 24 210-233 21-44 (207)
317 2qor_A Guanylate kinase; phosp 92.1 0.057 2E-06 53.9 2.5 25 210-234 12-36 (204)
318 3asz_A Uridine kinase; cytidin 92.1 0.08 2.7E-06 53.2 3.6 24 210-233 6-29 (211)
319 3iij_A Coilin-interacting nucl 92.1 0.056 1.9E-06 52.7 2.3 24 210-233 11-34 (180)
320 3fwy_A Light-independent proto 92.1 0.08 2.7E-06 56.6 3.6 39 209-250 47-85 (314)
321 1uf9_A TT1252 protein; P-loop, 92.1 0.08 2.7E-06 52.8 3.5 25 209-233 7-31 (203)
322 2ze6_A Isopentenyl transferase 92.0 0.074 2.5E-06 55.1 3.2 23 211-233 2-24 (253)
323 1y63_A LMAJ004144AAA protein; 91.9 0.077 2.6E-06 52.0 3.0 24 210-233 10-33 (184)
324 1kht_A Adenylate kinase; phosp 91.9 0.074 2.5E-06 52.4 3.0 24 211-234 4-27 (192)
325 1fx0_B ATP synthase beta chain 91.9 0.34 1.2E-05 54.1 8.5 99 195-299 154-275 (498)
326 1zuh_A Shikimate kinase; alpha 91.9 0.071 2.4E-06 51.3 2.7 25 210-234 7-31 (168)
327 3e70_C DPA, signal recognition 91.9 0.45 1.5E-05 51.0 9.3 27 209-235 128-154 (328)
328 1ukz_A Uridylate kinase; trans 91.8 0.097 3.3E-06 52.2 3.8 25 209-233 14-38 (203)
329 1jjv_A Dephospho-COA kinase; P 91.8 0.091 3.1E-06 52.6 3.5 22 211-232 3-24 (206)
330 3umf_A Adenylate kinase; rossm 91.8 0.084 2.9E-06 52.8 3.2 27 208-234 27-53 (217)
331 3ney_A 55 kDa erythrocyte memb 91.8 0.086 2.9E-06 51.7 3.2 24 210-233 19-42 (197)
332 3d31_A Sulfate/molybdate ABC t 91.8 0.63 2.2E-05 50.2 10.3 125 211-335 27-193 (348)
333 1tev_A UMP-CMP kinase; ploop, 91.8 0.084 2.9E-06 52.2 3.2 24 210-233 3-26 (196)
334 1via_A Shikimate kinase; struc 91.8 0.062 2.1E-06 52.1 2.2 22 212-233 6-27 (175)
335 2j41_A Guanylate kinase; GMP, 91.7 0.087 3E-06 52.7 3.3 24 211-234 7-30 (207)
336 1xjc_A MOBB protein homolog; s 91.7 0.086 2.9E-06 50.2 3.0 26 210-235 4-29 (169)
337 1lvg_A Guanylate kinase, GMP k 91.7 0.067 2.3E-06 53.1 2.4 23 211-233 5-27 (198)
338 1pgv_A TMD-1, tropomodulin TMD 91.7 0.26 9E-06 48.1 6.5 62 589-650 64-135 (197)
339 1pgv_A TMD-1, tropomodulin TMD 91.7 0.17 5.8E-06 49.4 5.1 91 586-676 32-137 (197)
340 2ga8_A Hypothetical 39.9 kDa p 91.6 0.14 4.9E-06 54.8 4.9 47 187-234 2-48 (359)
341 2jaq_A Deoxyguanosine kinase; 91.6 0.082 2.8E-06 52.7 3.0 23 212-234 2-24 (205)
342 2j37_W Signal recognition part 91.6 0.72 2.5E-05 52.5 10.9 27 208-234 99-125 (504)
343 2if2_A Dephospho-COA kinase; a 91.6 0.083 2.8E-06 52.7 2.9 21 212-232 3-23 (204)
344 3a4m_A L-seryl-tRNA(SEC) kinas 91.5 0.093 3.2E-06 54.7 3.3 24 210-233 4-27 (260)
345 2c95_A Adenylate kinase 1; tra 91.5 0.087 3E-06 52.1 3.0 24 210-233 9-32 (196)
346 2yvu_A Probable adenylyl-sulfa 91.5 0.1 3.5E-06 51.1 3.4 26 210-235 13-38 (186)
347 2hf9_A Probable hydrogenase ni 91.5 0.13 4.4E-06 52.3 4.3 24 210-233 38-61 (226)
348 2iyv_A Shikimate kinase, SK; t 91.4 0.066 2.3E-06 52.4 2.0 23 211-233 3-25 (184)
349 1g8p_A Magnesium-chelatase 38 91.4 0.064 2.2E-06 59.0 2.1 47 183-234 23-69 (350)
350 3aez_A Pantothenate kinase; tr 91.4 0.11 3.7E-06 55.6 3.7 26 209-234 89-114 (312)
351 3cm0_A Adenylate kinase; ATP-b 91.4 0.11 3.6E-06 51.0 3.4 24 210-233 4-27 (186)
352 3zvl_A Bifunctional polynucleo 91.4 0.39 1.3E-05 53.7 8.5 26 209-234 257-282 (416)
353 1cke_A CK, MSSA, protein (cyti 91.4 0.095 3.3E-06 53.3 3.2 23 211-233 6-28 (227)
354 2ffh_A Protein (FFH); SRP54, s 91.3 0.41 1.4E-05 53.2 8.4 26 210-235 98-123 (425)
355 2ck3_D ATP synthase subunit be 91.3 0.38 1.3E-05 53.5 8.0 99 195-299 142-262 (482)
356 1htw_A HI0065; nucleotide-bind 91.2 0.13 4.5E-06 48.6 3.7 24 211-234 34-57 (158)
357 3upu_A ATP-dependent DNA helic 91.2 0.19 6.4E-06 57.4 5.7 108 211-331 46-166 (459)
358 2grj_A Dephospho-COA kinase; T 91.2 0.12 4.2E-06 50.7 3.6 25 209-233 11-35 (192)
359 2cdn_A Adenylate kinase; phosp 91.2 0.11 3.8E-06 51.7 3.4 24 210-233 20-43 (201)
360 2pez_A Bifunctional 3'-phospho 91.1 0.11 3.9E-06 50.4 3.3 25 210-234 5-29 (179)
361 1qf9_A UMP/CMP kinase, protein 91.1 0.13 4.4E-06 50.7 3.8 24 210-233 6-29 (194)
362 2plr_A DTMP kinase, probable t 91.1 0.11 3.8E-06 52.2 3.3 25 211-235 5-29 (213)
363 1znw_A Guanylate kinase, GMP k 91.1 0.11 3.7E-06 52.0 3.2 23 211-233 21-43 (207)
364 1e6c_A Shikimate kinase; phosp 91.1 0.079 2.7E-06 51.2 2.2 23 211-233 3-25 (173)
365 1uj2_A Uridine-cytidine kinase 91.1 0.11 3.8E-06 53.8 3.3 26 209-234 21-46 (252)
366 1ls1_A Signal recognition part 91.0 0.36 1.2E-05 51.1 7.3 26 210-235 98-123 (295)
367 2bbw_A Adenylate kinase 4, AK4 91.0 0.11 3.6E-06 53.8 3.1 24 210-233 27-50 (246)
368 2bwj_A Adenylate kinase 5; pho 91.0 0.097 3.3E-06 51.9 2.7 23 211-233 13-35 (199)
369 2jeo_A Uridine-cytidine kinase 91.0 0.13 4.3E-06 53.1 3.7 24 210-233 25-48 (245)
370 2pt5_A Shikimate kinase, SK; a 90.9 0.11 3.8E-06 49.9 2.9 22 212-233 2-23 (168)
371 3l0o_A Transcription terminati 90.9 0.061 2.1E-06 57.8 1.1 56 193-253 162-217 (427)
372 1j8m_F SRP54, signal recogniti 90.9 0.36 1.2E-05 51.1 7.1 89 210-301 98-191 (297)
373 1rj9_A FTSY, signal recognitio 90.8 0.13 4.3E-06 54.8 3.4 25 210-234 102-126 (304)
374 2vli_A Antibiotic resistance p 90.7 0.076 2.6E-06 51.9 1.6 25 210-234 5-29 (183)
375 1z6g_A Guanylate kinase; struc 90.7 0.1 3.5E-06 52.6 2.6 23 211-233 24-46 (218)
376 2pbr_A DTMP kinase, thymidylat 90.6 0.12 4.1E-06 51.0 3.0 23 212-234 2-24 (195)
377 4e22_A Cytidylate kinase; P-lo 90.5 0.13 4.3E-06 53.3 3.2 24 211-234 28-51 (252)
378 1s96_A Guanylate kinase, GMP k 90.5 0.12 4.2E-06 51.9 3.0 25 210-234 16-40 (219)
379 2wsm_A Hydrogenase expression/ 90.5 0.16 5.6E-06 51.3 4.0 41 189-234 14-54 (221)
380 2f6r_A COA synthase, bifunctio 90.5 0.15 5.3E-06 53.6 3.8 23 209-231 74-96 (281)
381 1nn5_A Similar to deoxythymidy 90.5 0.13 4.3E-06 51.9 3.0 25 210-234 9-33 (215)
382 2wwf_A Thymidilate kinase, put 90.4 0.12 4.1E-06 51.9 2.8 25 210-234 10-34 (212)
383 3b5x_A Lipid A export ATP-bind 90.4 1.2 4.2E-05 52.3 11.9 24 211-234 370-393 (582)
384 3tlx_A Adenylate kinase 2; str 90.2 0.17 5.9E-06 51.9 3.9 24 210-233 29-52 (243)
385 1aky_A Adenylate kinase; ATP:A 90.2 0.13 4.5E-06 52.0 2.9 24 210-233 4-27 (220)
386 2z0h_A DTMP kinase, thymidylat 90.0 0.15 5E-06 50.5 3.0 23 212-234 2-24 (197)
387 1m7g_A Adenylylsulfate kinase; 90.0 0.17 5.8E-06 50.8 3.5 25 210-234 25-49 (211)
388 2ewv_A Twitching motility prot 89.9 0.47 1.6E-05 52.1 7.2 108 210-332 136-246 (372)
389 1zd8_A GTP:AMP phosphotransfer 89.9 0.14 4.7E-06 52.2 2.8 25 210-234 7-31 (227)
390 2v54_A DTMP kinase, thymidylat 89.9 0.15 5.1E-06 50.8 3.0 24 211-234 5-28 (204)
391 3vkw_A Replicase large subunit 89.8 0.69 2.4E-05 51.3 8.4 26 207-232 158-183 (446)
392 2pt7_A CAG-ALFA; ATPase, prote 89.8 0.41 1.4E-05 51.6 6.5 105 211-331 172-276 (330)
393 2f1r_A Molybdopterin-guanine d 89.7 0.1 3.5E-06 50.1 1.5 25 211-235 3-27 (171)
394 3fb4_A Adenylate kinase; psych 89.7 0.15 5.3E-06 51.3 3.0 22 212-233 2-23 (216)
395 1vht_A Dephospho-COA kinase; s 89.7 0.18 6.2E-06 50.8 3.5 23 210-232 4-26 (218)
396 3e1s_A Exodeoxyribonuclease V, 89.7 0.42 1.4E-05 55.8 7.0 104 211-328 205-314 (574)
397 1zu4_A FTSY; GTPase, signal re 89.7 0.36 1.2E-05 51.6 5.9 28 208-235 103-130 (320)
398 3dl0_A Adenylate kinase; phosp 89.6 0.15 5E-06 51.4 2.7 23 212-234 2-24 (216)
399 2i3b_A HCR-ntpase, human cance 89.6 0.15 5E-06 50.0 2.6 23 212-234 3-25 (189)
400 1gtv_A TMK, thymidylate kinase 89.6 0.089 3E-06 53.0 1.0 23 212-234 2-24 (214)
401 3b9q_A Chloroplast SRP recepto 89.5 0.2 6.7E-06 53.3 3.7 25 210-234 100-124 (302)
402 4a74_A DNA repair and recombin 89.5 0.18 6.3E-06 51.3 3.4 43 210-252 25-70 (231)
403 3llm_A ATP-dependent RNA helic 89.5 1.5 5.2E-05 44.5 10.4 90 211-301 77-187 (235)
404 3nwj_A ATSK2; P loop, shikimat 89.5 0.13 4.4E-06 52.9 2.2 24 211-234 49-72 (250)
405 1sq5_A Pantothenate kinase; P- 89.5 0.19 6.6E-06 53.7 3.7 24 210-233 80-103 (308)
406 2onk_A Molybdate/tungstate ABC 89.5 0.17 5.9E-06 51.6 3.1 24 211-234 25-48 (240)
407 3a8t_A Adenylate isopentenyltr 89.5 0.22 7.7E-06 53.0 4.0 25 210-234 40-64 (339)
408 3tif_A Uncharacterized ABC tra 89.4 0.17 6E-06 51.5 3.1 24 211-234 32-55 (235)
409 1zak_A Adenylate kinase; ATP:A 89.4 0.14 4.8E-06 51.8 2.4 25 210-234 5-29 (222)
410 2pcj_A ABC transporter, lipopr 89.4 0.18 6E-06 51.1 3.1 24 211-234 31-54 (224)
411 3d3q_A TRNA delta(2)-isopenten 89.3 0.18 6.2E-06 53.9 3.2 23 211-233 8-30 (340)
412 3lnc_A Guanylate kinase, GMP k 89.3 0.12 4.1E-06 52.7 1.8 23 211-233 28-51 (231)
413 3b60_A Lipid A export ATP-bind 89.3 1.2 4.1E-05 52.4 10.6 24 211-234 370-393 (582)
414 2yhs_A FTSY, cell division pro 89.3 0.46 1.6E-05 53.4 6.6 26 209-234 292-317 (503)
415 1np6_A Molybdopterin-guanine d 89.3 0.19 6.4E-06 48.3 3.0 25 210-234 6-30 (174)
416 2ehv_A Hypothetical protein PH 89.2 0.18 6.3E-06 52.1 3.2 22 211-232 31-52 (251)
417 3gmt_A Adenylate kinase; ssgci 89.2 0.093 3.2E-06 52.7 0.8 24 211-234 9-32 (230)
418 3vr4_D V-type sodium ATPase su 89.1 0.4 1.4E-05 53.0 5.7 88 212-299 153-257 (465)
419 3bk7_A ABC transporter ATP-bin 89.0 1.8 6.2E-05 50.7 11.7 126 211-336 383-538 (607)
420 3bgw_A DNAB-like replicative h 89.0 1.4 4.8E-05 49.6 10.4 51 210-265 197-247 (444)
421 3j16_B RLI1P; ribosome recycli 89.0 2.3 7.7E-05 49.8 12.4 24 211-234 104-127 (608)
422 2j9r_A Thymidine kinase; TK1, 88.9 0.39 1.3E-05 47.4 4.9 110 210-331 28-139 (214)
423 3r20_A Cytidylate kinase; stru 88.9 0.21 7.2E-06 50.4 3.2 24 210-233 9-32 (233)
424 3ake_A Cytidylate kinase; CMP 88.9 0.19 6.7E-06 50.1 3.0 22 212-233 4-25 (208)
425 1yrb_A ATP(GTP)binding protein 88.9 0.25 8.4E-06 51.5 3.9 27 208-234 12-38 (262)
426 3be4_A Adenylate kinase; malar 88.9 0.17 5.7E-06 51.0 2.5 24 211-234 6-29 (217)
427 3gfo_A Cobalt import ATP-bindi 88.8 0.2 6.9E-06 52.2 3.1 23 211-233 35-57 (275)
428 3exa_A TRNA delta(2)-isopenten 88.8 0.23 7.9E-06 52.1 3.4 24 210-233 3-26 (322)
429 3cmu_A Protein RECA, recombina 88.7 0.42 1.5E-05 63.0 6.6 82 210-299 1427-1514(2050)
430 3ozx_A RNAse L inhibitor; ATP 88.7 1.5 5.2E-05 50.5 10.6 25 210-234 25-49 (538)
431 3j16_B RLI1P; ribosome recycli 88.6 2.1 7.3E-05 50.0 11.9 126 211-336 379-534 (608)
432 1b0u_A Histidine permease; ABC 88.6 0.21 7.3E-06 51.8 3.1 24 211-234 33-56 (262)
433 3b85_A Phosphate starvation-in 88.5 0.17 5.7E-06 50.4 2.1 23 211-233 23-45 (208)
434 3crm_A TRNA delta(2)-isopenten 88.4 0.23 7.8E-06 52.8 3.2 23 211-233 6-28 (323)
435 2qmh_A HPR kinase/phosphorylas 88.4 0.25 8.6E-06 47.9 3.2 24 211-234 35-58 (205)
436 1g41_A Heat shock protein HSLU 88.4 0.36 1.2E-05 53.8 4.9 51 184-234 15-74 (444)
437 4g1u_C Hemin import ATP-bindin 88.4 0.22 7.7E-06 51.7 3.1 24 211-234 38-61 (266)
438 1ji0_A ABC transporter; ATP bi 88.4 0.23 7.8E-06 50.8 3.1 24 211-234 33-56 (240)
439 1sgw_A Putative ABC transporte 88.3 0.2 6.7E-06 50.1 2.5 24 211-234 36-59 (214)
440 2olj_A Amino acid ABC transpor 88.3 0.23 7.9E-06 51.5 3.1 24 211-234 51-74 (263)
441 2og2_A Putative signal recogni 88.3 0.27 9.1E-06 53.4 3.6 26 209-234 156-181 (359)
442 2wji_A Ferrous iron transport 88.2 0.32 1.1E-05 46.4 3.9 23 211-233 4-26 (165)
443 3p32_A Probable GTPase RV1496/ 88.2 0.4 1.4E-05 52.5 5.1 39 193-234 65-103 (355)
444 1g6h_A High-affinity branched- 88.1 0.24 8.1E-06 51.3 3.1 24 211-234 34-57 (257)
445 1mv5_A LMRA, multidrug resista 88.1 0.26 8.7E-06 50.6 3.3 24 211-234 29-52 (243)
446 1q57_A DNA primase/helicase; d 88.1 1.8 6.3E-05 49.8 11.0 53 210-266 242-294 (503)
447 2d2e_A SUFC protein; ABC-ATPas 88.1 0.25 8.6E-06 50.9 3.2 23 211-233 30-52 (250)
448 2xb4_A Adenylate kinase; ATP-b 87.9 0.24 8.3E-06 50.1 3.0 22 212-233 2-23 (223)
449 3end_A Light-independent proto 87.9 0.28 9.5E-06 52.6 3.6 42 208-252 39-80 (307)
450 1vpl_A ABC transporter, ATP-bi 87.9 0.25 8.6E-06 51.0 3.1 24 211-234 42-65 (256)
451 1e4v_A Adenylate kinase; trans 87.9 0.24 8.4E-06 49.7 2.9 22 212-233 2-23 (214)
452 2zu0_C Probable ATP-dependent 87.9 0.26 8.9E-06 51.3 3.2 23 211-233 47-69 (267)
453 1a7j_A Phosphoribulokinase; tr 87.8 0.13 4.5E-06 54.4 0.9 24 210-233 5-28 (290)
454 2zej_A Dardarin, leucine-rich 87.8 0.25 8.7E-06 48.1 2.9 22 212-233 4-25 (184)
455 1tue_A Replication protein E1; 87.8 0.18 6.3E-06 49.1 1.8 24 211-234 59-82 (212)
456 1oix_A RAS-related protein RAB 87.7 0.27 9.2E-06 48.3 3.1 25 210-234 29-53 (191)
457 2qi9_C Vitamin B12 import ATP- 87.6 0.27 9.2E-06 50.5 3.1 24 211-234 27-50 (249)
458 2ixe_A Antigen peptide transpo 87.6 0.27 9.2E-06 51.3 3.1 24 211-234 46-69 (271)
459 3k1j_A LON protease, ATP-depen 87.6 0.32 1.1E-05 57.6 4.2 44 184-234 41-84 (604)
460 2ghi_A Transport protein; mult 87.6 0.27 9.3E-06 50.9 3.1 24 211-234 47-70 (260)
461 1ak2_A Adenylate kinase isoenz 87.5 0.27 9.3E-06 50.1 3.0 24 211-234 17-40 (233)
462 3qf4_A ABC transporter, ATP-bi 87.5 2.4 8.1E-05 49.8 11.5 24 211-234 370-393 (587)
463 2r9v_A ATP synthase subunit al 87.4 1 3.5E-05 50.4 7.7 96 195-299 164-276 (515)
464 3foz_A TRNA delta(2)-isopenten 87.4 0.3 1E-05 51.2 3.2 24 210-233 10-33 (316)
465 2yz2_A Putative ABC transporte 87.3 0.29 9.8E-06 51.0 3.1 24 211-234 34-57 (266)
466 2r6a_A DNAB helicase, replicat 87.3 2.5 8.5E-05 47.9 11.2 49 211-263 204-252 (454)
467 4a82_A Cystic fibrosis transme 87.3 1.3 4.3E-05 52.1 9.0 24 211-234 368-391 (578)
468 2nq2_C Hypothetical ABC transp 87.3 0.28 9.7E-06 50.5 3.0 24 211-234 32-55 (253)
469 2ihy_A ABC transporter, ATP-bi 87.3 0.29 9.8E-06 51.3 3.1 25 211-235 48-72 (279)
470 1ltq_A Polynucleotide kinase; 87.2 0.29 9.9E-06 52.3 3.2 22 211-232 3-24 (301)
471 3mfy_A V-type ATP synthase alp 87.1 1.2 4E-05 50.4 7.9 59 195-262 216-275 (588)
472 2vp4_A Deoxynucleoside kinase; 87.1 0.31 1.1E-05 49.5 3.2 24 210-233 20-43 (230)
473 1q3t_A Cytidylate kinase; nucl 87.0 0.32 1.1E-05 49.7 3.3 25 209-233 15-39 (236)
474 1xx6_A Thymidine kinase; NESG, 87.0 0.15 5E-06 50.0 0.6 109 210-330 8-118 (191)
475 2eyu_A Twitching motility prot 87.0 0.38 1.3E-05 49.9 3.8 108 210-332 25-135 (261)
476 2v9p_A Replication protein E1; 86.9 0.31 1.1E-05 51.4 3.2 23 211-233 127-149 (305)
477 3hjn_A DTMP kinase, thymidylat 86.9 0.81 2.8E-05 45.0 6.0 25 212-236 2-26 (197)
478 2dyk_A GTP-binding protein; GT 86.8 0.36 1.2E-05 45.5 3.3 24 211-234 2-25 (161)
479 2f9l_A RAB11B, member RAS onco 86.8 0.3 1E-05 48.3 2.9 24 210-233 5-28 (199)
480 2wjg_A FEOB, ferrous iron tran 86.7 0.53 1.8E-05 45.8 4.6 24 210-233 7-30 (188)
481 2v3c_C SRP54, signal recogniti 86.6 0.37 1.3E-05 53.9 3.7 26 209-234 98-123 (432)
482 3gqb_B V-type ATP synthase bet 86.6 0.55 1.9E-05 51.9 4.9 101 195-299 136-260 (464)
483 2yl4_A ATP-binding cassette SU 86.5 1.2 4E-05 52.6 8.2 24 211-234 371-394 (595)
484 3ld9_A DTMP kinase, thymidylat 86.5 0.66 2.3E-05 46.4 5.2 26 210-235 21-46 (223)
485 2qe7_A ATP synthase subunit al 86.5 1.1 3.7E-05 50.2 7.3 96 195-299 151-263 (502)
486 2q6t_A DNAB replication FORK h 86.5 3.3 0.00011 46.7 11.6 53 210-266 200-252 (444)
487 4eaq_A DTMP kinase, thymidylat 86.3 0.4 1.4E-05 48.6 3.5 26 210-235 26-51 (229)
488 3sop_A Neuronal-specific septi 86.3 0.36 1.2E-05 50.3 3.1 22 212-233 4-25 (270)
489 4akg_A Glutathione S-transfera 86.1 4.2 0.00014 55.9 14.0 145 213-384 1270-1452(2695)
490 1nlf_A Regulatory protein REPA 86.1 0.36 1.2E-05 50.8 3.2 23 211-233 31-53 (279)
491 2ce2_X GTPase HRAS; signaling 86.1 0.35 1.2E-05 45.8 2.8 23 212-234 5-27 (166)
492 3oaa_A ATP synthase subunit al 86.0 2.3 7.8E-05 47.5 9.4 96 195-299 151-263 (513)
493 2pjz_A Hypothetical protein ST 86.0 0.37 1.3E-05 49.9 3.1 24 211-234 31-54 (263)
494 3qf4_B Uncharacterized ABC tra 86.0 1 3.5E-05 53.1 7.3 25 210-234 381-405 (598)
495 2c61_A A-type ATP synthase non 85.9 0.75 2.6E-05 51.2 5.6 101 195-299 141-258 (469)
496 3cmu_A Protein RECA, recombina 85.9 0.78 2.7E-05 60.6 6.6 83 210-300 383-471 (2050)
497 3lv8_A DTMP kinase, thymidylat 85.9 0.64 2.2E-05 47.1 4.7 27 210-236 27-53 (236)
498 1svm_A Large T antigen; AAA+ f 85.8 0.39 1.3E-05 52.5 3.3 24 210-233 169-192 (377)
499 2nzj_A GTP-binding protein REM 85.7 0.41 1.4E-05 45.9 3.1 25 210-234 4-28 (175)
500 2ocp_A DGK, deoxyguanosine kin 85.7 0.42 1.4E-05 49.0 3.3 25 210-234 2-26 (241)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.3e-46 Score=443.66 Aligned_cols=316 Identities=17% Similarity=0.228 Sum_probs=253.6
Q ss_pred eccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhc--CccccccccceeEEEEeCCCC--CHHHHHHHH
Q 001281 187 YGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYN--DKAVSDIKFDIKAWVCVSDEF--DVLSISMAL 262 (1108)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 262 (1108)
|||++++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++. +|++++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-NYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-TBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-cCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 23479999999999999999999998 566777 89999999999885 899999999
Q ss_pred HHHhcCCCC-------CcccHHHHHHHHHHHhCCc-eEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhh
Q 001281 263 LESITCKPC-------DLKALNEVQVQLQKALDGK-KFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAS 334 (1108)
Q Consensus 263 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 334 (1108)
+.+++.... +..+.+.+...+++.|.++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 1224566788999999996 9999999999853222321 27999999999999998
Q ss_pred hcc-ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCChhHHHHHHhh
Q 001281 335 TMG-SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWEDILNS 413 (1108)
Q Consensus 335 ~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~ 413 (1108)
.++ ....|+|++|+++|||+||.++++....++..+ +++.+|+++|+|+||||+++|+.++.+ . -+|...+.+
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~----~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~ 353 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEE----DVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNN 353 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHH----HHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHH----HHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHH
Confidence 876 336799999999999999999998665434555 789999999999999999999999766 2 233333433
Q ss_pred ccCCCCCCCChhHHHHHhhhcCChhHHHHHh-----------HhcccCCCceechHHHHHHHHHc--CCccCCCCchhHH
Q 001281 414 NIWDLPEQSGVQPVLKLSYHYLPSHLKRCFA-----------YCAIFPKDYELKEKELVFLWMAE--GIIQQPRNNKQLE 480 (1108)
Q Consensus 414 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~~ 480 (1108)
..+.. ....+..++.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ ||+.........+
T Consensus 354 ~l~~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 354 KLESR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred Hhhcc-cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 32221 2456888999999999999999999 999999999999 8999999 9998755456678
Q ss_pred HHHHHHHHHHHhCccccccCC-CCCeEEEchhHHHHHHHhhccceE
Q 001281 481 DWGSECFHDLVSRSIFQQSSG-DGSKFVMHDLVHDLAQLVSGESIC 525 (1108)
Q Consensus 481 ~~~~~~~~~L~~~~li~~~~~-~~~~~~~H~lv~~~a~~~~~~~~~ 525 (1108)
++++ ||++|+++||++.... ...+|+|||+||+||+.++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 9999999999998654 345799999999999999887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.4e-38 Score=372.76 Aligned_cols=284 Identities=18% Similarity=0.233 Sum_probs=228.0
Q ss_pred eeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccce-eEEEEeCCCCCHHHHHHHHHH
Q 001281 186 VYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDI-KAWVCVSDEFDVLSISMALLE 264 (1108)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~ 264 (1108)
.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++. +|+. ++|+++++.++...++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~-~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC----SSCEEEECCSTTSSHHHHHHHHHHHCHHHH-HHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC----CCeEEEEEcCCCccHHHHHHHHHHhhHHHH-hCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997532 268999999999999999999998876766 7886 999999999998888888777
Q ss_pred HhcCCC------CC-----cccHHHHHHHHHHHh---CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 265 SITCKP------CD-----LKALNEVQVQLQKAL---DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 265 ~l~~~~------~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
.++... .+ ..+.+++...+++.+ .++|+||||||||+. +.|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 543210 01 123455566777765 789999999999984 666653 2 789999999999
Q ss_pred hhhhhccccceeeCC------CCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCC-C
Q 001281 331 HVASTMGSVEHYNLS------LLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKH-G 403 (1108)
Q Consensus 331 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~-~ 403 (1108)
.++..+.....|.++ +|+++|||+||.+..... .. +...+| |+|+||||+++|+.|+.+. .
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~e----eL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQ----DLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TT----THHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HH----HHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 988755544456666 999999999999884221 11 333343 9999999999999999875 4
Q ss_pred hhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhH-HHHHhHhcccCCCceechHHHHHHHHHcCCccCCCCchhHHHH
Q 001281 404 DNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHL-KRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQLEDW 482 (1108)
Q Consensus 404 ~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 482 (1108)
.++|... ....+..+|.+||+.||+++ |.||+|||+||+++.|+.+.++.+|+++| ++.
T Consensus 344 ~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred HHHHhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 6778753 23578999999999999999 99999999999999999999999998876 134
Q ss_pred HHHHHHHHHhCccccccCCCCCeEEEchhHHHHH
Q 001281 483 GSECFHDLVSRSIFQQSSGDGSKFVMHDLVHDLA 516 (1108)
Q Consensus 483 ~~~~~~~L~~~~li~~~~~~~~~~~~H~lv~~~a 516 (1108)
++.++++|+++||++... +...|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 788999999999999852 346899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-36 Score=402.74 Aligned_cols=312 Identities=20% Similarity=0.287 Sum_probs=248.1
Q ss_pred cccCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccc-cccccceeEEEEeCCCCC--HH
Q 001281 180 VRTERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAV-SDIKFDIKAWVCVSDEFD--VL 256 (1108)
Q Consensus 180 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~~~~~~--~~ 256 (1108)
+..+..||||++++++|.++|.... .+.++|+|+||||+||||||+++|++.+. ...+++.++||++++..+ ..
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~---~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN---GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT---TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc---CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 3445679999999999999997543 34799999999999999999999998643 332567888999998543 44
Q ss_pred HHHHHHHHHhcCCCC----CcccHHHHHHHHHHHhCCc--eEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 257 SISMALLESITCKPC----DLKALNEVQVQLQKALDGK--KFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 257 ~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
..+..++..+..... ...+.+++...++..+.++ |+||||||||+. ..|.. ..+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCH
Confidence 556677777765432 2345778888999999877 999999999864 33332 36899999999999
Q ss_pred hhhhh-ccccceeeCCC-CChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCChhHHH
Q 001281 331 HVAST-MGSVEHYNLSL-LSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWE 408 (1108)
Q Consensus 331 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~ 408 (1108)
.++.. .+....+.+++ |+++||++||...++... ...+ +.+.+|+++|+|+||||+++|++|+.++ ..|.
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~----~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~ 339 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK--EDLP----AEAHSIIKECKGSPLVVSLIGALLRDFP--NRWA 339 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS--TTCC----THHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh--hhCc----HHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHH
Confidence 99854 45567899996 999999999999885432 2333 6789999999999999999999998765 3577
Q ss_pred HHHhhccCCC----C-----CCCChhHHHHHhhhcCChhHHHHHhHhcccCCCceechHHHHHHHHHcCCccCCCCchhH
Q 001281 409 DILNSNIWDL----P-----EQSGVQPVLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQL 479 (1108)
Q Consensus 409 ~~l~~~~~~~----~-----~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 479 (1108)
..++...... . ....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------ 407 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------ 407 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------
Confidence 7665432211 1 113588999999999999999999999999999999999999999543
Q ss_pred HHHHHHHHHHHHhCccccccCCC-CCeEEEchhHHHHHHHhhccc
Q 001281 480 EDWGSECFHDLVSRSIFQQSSGD-GSKFVMHDLVHDLAQLVSGES 523 (1108)
Q Consensus 480 ~~~~~~~~~~L~~~~li~~~~~~-~~~~~~H~lv~~~a~~~~~~~ 523 (1108)
++.++.++++|+++||++....+ ...|+||+++|++|+..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 46788999999999999876533 336999999999999987765
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.5e-35 Score=363.55 Aligned_cols=461 Identities=15% Similarity=0.098 Sum_probs=260.4
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+.++++|++|++++|.++.... +..+++|++|++++|.+...++.++++++|++|++++|.....+|..++++++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 4455555555555555543321 255566666666666655433336666666666666655444555566666666666
Q ss_pred eecCCCCCCcCCccCCCCCCCCccCce--eeCCCCCCCccc-cccccccCceeEecCccCCCChhhhhhhccCCCCCCCc
Q 001281 671 DIEGANSLEGMPYGMEKLKHLQTLSNF--IVGKDTGSGLKD-LKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQA 747 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~i~~L~~L~~L~~~--~~~~~~~~~l~~-l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 747 (1108)
++++|.....+|.. .+++|++|+.. ......+..+.. +++|+.|. ...+.+....+..+..+++|+.
T Consensus 253 ~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~--------Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 253 NISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD--------LSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp ECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE--------CCSSEEEECCCGGGGGCTTCCE
T ss_pred ECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE--------CcCCcCCCccchHHhcCCCccE
Confidence 66666533333322 45555555311 111111222222 24444443 1223333344555666677777
Q ss_pred eEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCC-CCccccccCCcC-cceEEEEeCCCCCCCCC-CCCC-
Q 001281 748 LSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGE-NFPMWIGDLSFS-KMEVLELQNCQNCTSLP-SLSM- 823 (1108)
Q Consensus 748 L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~-~L~~L~L~~~~~~~~l~-~l~~- 823 (1108)
|++++|...+..+. ..+..+++|+.|++++|... .+|.++.. ++ +|+.|++++|.+.+.+| .+..
T Consensus 323 L~L~~n~l~~~ip~---------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 323 LALSSNNFSGELPM---------DTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp EECCSSEEEEECCH---------HHHTTCTTCCEEECCSSEEEECCCTTHHH--HTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred EECCCCcccCcCCH---------HHHhcCCCCCEEeCcCCccCccccHHHHh--hhcCCcEEEccCCCcCCCcChhhhhc
Confidence 77766643211111 11344567777777776654 55665542 23 67777777776654433 3333
Q ss_pred -CCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC
Q 001281 824 -LGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE 902 (1108)
Q Consensus 824 -l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 902 (1108)
+++|++|++++|.....++..+ ..+++|+.|++.++.- ....+..+..+++|+.|++++| .+++.+|.
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~Ls~N~l----~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~ 460 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTL------SNCSELVSLHLSFNYL----SGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQ 460 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGG------GGCTTCCEEECCSSEE----ESCCCGGGGGCTTCCEEECCSS-CCCSCCCG
T ss_pred ccCCccEEECCCCccccccCHHH------hcCCCCCEEECcCCcc----cCcccHHHhcCCCCCEEECCCC-cccCcCCH
Confidence 5667777777665444444333 3466666666665421 1112233455666666666664 44445554
Q ss_pred ---CCCCccEEEEccCCCcc---ccCCCCCcccEEEEeecCCcc--ccCCCCCCCccEEEEecCCcccccccCcccCCCC
Q 001281 903 ---LLPSLEILVISKCADLV---VPFSSFPMLCRLEIEECKGIT--CSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPP 974 (1108)
Q Consensus 903 ---~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~c~~l~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 974 (1108)
.+++|+.|++++|.... ..+..+++|++|++++|.... ...+..+++|+.|++++|.+... .|.
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--------~p~ 532 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN--------IPA 532 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE--------CCG
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc--------CCH
Confidence 34566666666665432 234445666666666665331 12344566666666665554321 133
Q ss_pred CCCCCCCCcEEEEcccCCCcccc---------------------------------------------------------
Q 001281 975 AMDSKSLPTSVTISNVLEFGKFL--------------------------------------------------------- 997 (1108)
Q Consensus 975 ~~~~~~~L~~L~l~~c~~l~~~~--------------------------------------------------------- 997 (1108)
.+..+++|+.|++++|+....+|
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 34456666666666543221111
Q ss_pred ---------------cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCcccc-ccccccccCCCcce
Q 001281 998 ---------------KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLV-SFSEVIFLMNNLRY 1061 (1108)
Q Consensus 998 ---------------~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~-~lp~~~~~l~~L~~ 1061 (1108)
+..+++|+.|++++|.. ...+|..+.++++|+.|+++ .|.++ .+|..+..+++|++
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l------~g~ip~~l~~l~~L~~L~Ls--~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNML------SGYIPKEIGSMPYLFILNLG--HNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCC------BSCCCGGGGGCTTCCEEECC--SSCCCSCCCGGGGGCTTCCE
T ss_pred cccccceecccCchhhhccccccEEECcCCcc------cccCCHHHhccccCCEEeCc--CCccCCCCChHHhCCCCCCE
Confidence 23456788899998885 55788889999999999998 55555 78888888999999
Q ss_pred EecccccCCCCCcccCCCCCCCccEEeeecCcCccccccc
Q 001281 1062 LKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKKQA 1101 (1108)
Q Consensus 1062 L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~~~ 1101 (1108)
|++++|+-...+|. .+..+++|++|++++|+--..+|+.
T Consensus 685 LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp EECCSSCCEECCCG-GGGGCCCCSEEECCSSEEEEECCSS
T ss_pred EECCCCcccCcCCh-HHhCCCCCCEEECcCCcccccCCCc
Confidence 99988643346776 7888899999999998755566643
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-33 Score=347.52 Aligned_cols=171 Identities=14% Similarity=0.098 Sum_probs=123.0
Q ss_pred ccccceeEEEeecCCCCcccccccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCc-c
Q 001281 535 RRFERVRHSSYTRGHFDSKIRFESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPN-S 613 (1108)
Q Consensus 535 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~ 613 (1108)
..+..++++.+..+.+.. .....+..+++|++|.+.++.. ..+.+..|.++++|++|+|++|.++.+|. .
T Consensus 22 ~~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTI--------SKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp CSCTTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCC--------CCCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCcc--------CccCHHHHhcccCcCEEECCCCccCccChhh
Confidence 345678888887766543 2334577888999998876543 23445677888999999999999998876 5
Q ss_pred hhcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCcc-C--CCCC
Q 001281 614 IKELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYG-M--EKLK 689 (1108)
Q Consensus 614 i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i--~~L~ 689 (1108)
|+++++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|. +..++.. + ..++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANS 171 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTC
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccc
Confidence 899999999999999998886 578999999999999987666667778899999999999887 5555543 2 3456
Q ss_pred CCCccCc--eeeCCCCCCCccccccccc
Q 001281 690 HLQTLSN--FIVGKDTGSGLKDLKNLKF 715 (1108)
Q Consensus 690 ~L~~L~~--~~~~~~~~~~l~~l~~L~~ 715 (1108)
+|+.|+. +......+..+..+++|+.
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred cccEEECCCCcccccChhhhhhhhhhhh
Confidence 7777742 2222223333444554443
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-33 Score=343.82 Aligned_cols=500 Identities=14% Similarity=0.089 Sum_probs=286.4
Q ss_pred cccceeEEEeecCCCCcccccccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-Ccch
Q 001281 536 RFERVRHSSYTRGHFDSKIRFESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSI 614 (1108)
Q Consensus 536 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i 614 (1108)
.+..++++.+..+.... .....+.++++|+.|.+.++.. ..+.+..|.++++|++|+|++|.++.+ |..|
T Consensus 30 ~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l--------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEI--------ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp SCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred CCCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcc--------cccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 44667777777665543 2234567778888887766543 234456677788888888888888776 7778
Q ss_pred hcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCc-ccchhccCCCCccEEeecCCCCCCcC-CccCCCCCCC
Q 001281 615 KELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLT-RLPSKMWNLINLRHLDIEGANSLEGM-PYGMEKLKHL 691 (1108)
Q Consensus 615 ~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L 691 (1108)
+++++|++|++++|.++.+| ..++++++|++|++++|.... .+|..++++++|++|++++|. +..+ |..++.+++|
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLREN 179 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHC
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcc
Confidence 88888888888888887775 567888888888888865433 567778888888888888877 4443 4456666666
Q ss_pred Cc----cC--ceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhh
Q 001281 692 QT----LS--NFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAK 765 (1108)
Q Consensus 692 ~~----L~--~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 765 (1108)
+. |+ .+.........+.. .+|+.|. +.+ ........+..+.++++|+.+.+..+......... ..
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~----L~~---n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~-~~ 250 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQG-IKLHELT----LRG---NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE-IF 250 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTT-CEEEEEE----EES---CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS-CC
T ss_pred ccccceeeccCCCcceeCcccccC-ceeeeee----ccC---CccchhHHHHHhccccccccccccccccccCCccc-cc
Confidence 53 21 11111111111221 1344332 211 11112344555666777777766654422110000 00
Q ss_pred hhhhhcCCCCCCCCCeEEE-eecCCCC-CccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCc
Q 001281 766 EHTVLDMLQPHTNLKKLAI-TSYSGEN-FPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGS 843 (1108)
Q Consensus 766 ~~~~l~~l~~~~~L~~L~l-~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~ 843 (1108)
....+..+... .++.+.+ ..+.... +|. +. .+++|+.|++++|.+ ..+|.+..+++|+.|++++|.. ..+|
T Consensus 251 ~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp- 323 (606)
T 3vq2_A 251 EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFP- 323 (606)
T ss_dssp CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCC-
T ss_pred ChHHhhhhhhc-cHhheeccccccccccccc-cc--cCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccc-
Confidence 00111111111 2333333 1222211 122 22 345666666666655 3344666666666666666653 3333
Q ss_pred ccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCC--CCC---CCCCccEEEEccCCCc
Q 001281 844 EFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGK--LPE---LLPSLEILVISKCADL 918 (1108)
Q Consensus 844 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--~p~---~l~~L~~L~l~~~~~l 918 (1108)
. + .+++|+.|.+.++...... .+..+++|++|++++| .+++. +|. .+++|++|++++|...
T Consensus 324 ~------~-~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 324 T------L-DLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp C------C-CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred c------C-CCCccceeeccCCcCccch------hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccc
Confidence 1 1 4566666666665433222 2345666777776664 33322 121 4566777777666533
Q ss_pred c--ccCCCCCcccEEEEeecCCccc---cCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCC
Q 001281 919 V--VPFSSFPMLCRLEIEECKGITC---STPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEF 993 (1108)
Q Consensus 919 ~--~~~~~l~~L~~L~l~~c~~l~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 993 (1108)
. ..+..+++|+.|++++|..... ..+..+++|+.|++++|.+... .+..+..+++|++|++++|...
T Consensus 390 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID--------FDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC--------CTTTTTTCTTCCEEECTTCEEG
T ss_pred cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc--------chhhhcCCCCCCEEECCCCcCC
Confidence 2 2344567777777777653322 2455677777777776655432 2344556777777777776443
Q ss_pred cc-cc--cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCcccccc-ccccccCCCcceEecccccC
Q 001281 994 GK-FL--KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSF-SEVIFLMNNLRYLKIENSRA 1069 (1108)
Q Consensus 994 ~~-~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~ 1069 (1108)
.. .+ +..+++|++|++++|.. ....|..+.++++|++|+++ .+.++.+ |..+..+++|++|+|++| .
T Consensus 462 ~~~~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~~~~~~~l~~L~~L~l~~N-~ 532 (606)
T 3vq2_A 462 DNTLSNVFANTTNLTFLDLSKCQL------EQISWGVFDTLHRLQLLNMS--HNNLLFLDSSHYNQLYSLSTLDCSFN-R 532 (606)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECC--SSCCSCEEGGGTTTCTTCCEEECTTS-C
T ss_pred CcchHHhhccCCCCCEEECCCCcC------CccChhhhcccccCCEEECC--CCcCCCcCHHHccCCCcCCEEECCCC-c
Confidence 32 22 45677777777777764 33345667777778888887 3455554 555666777888888775 5
Q ss_pred CCCCcccCCCCCC-CccEEeeecCc
Q 001281 1070 LKSLPQEVMGNNA-QLEKLFIKYCD 1093 (1108)
Q Consensus 1070 l~~lp~~~l~~l~-~L~~L~l~~c~ 1093 (1108)
++.+|. .+..++ +|++|++++||
T Consensus 533 l~~~p~-~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 533 IETSKG-ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CCCEES-CGGGSCTTCCEEECCSCC
T ss_pred CcccCH-hHhhhcccCcEEEccCCC
Confidence 777777 366665 57888877765
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-34 Score=358.03 Aligned_cols=437 Identities=20% Similarity=0.136 Sum_probs=218.1
Q ss_pred hccCCCcccEEEecCcccc-ccCc--chhcCCCCcEEEeeCcccc-ccchhh-hcCccCcEeeecCCcCCcccchh---c
Q 001281 590 MLPKFKKLRVLSLEGYYVT-QLPN--SIKELKLLRYLNVAGTQIR-SLPEST-SSLMHLRVLILRDCSRLTRLPSK---M 661 (1108)
Q Consensus 590 ~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~l~~L~~L~Ls~~~i~-~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~---i 661 (1108)
.+.++++|++|+|++|.++ .+|. .++++++|++|+|++|.+. .+|..+ .++++|++|++++|......|.. +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence 3445555555555555544 2344 4555555555555555444 223332 45555555555554433333333 4
Q ss_pred cCCCCccEEeecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCC
Q 001281 662 WNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCE 741 (1108)
Q Consensus 662 ~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 741 (1108)
+++++|++|++++|......| ++.+++|++|+.. .+.+....+. +..
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls------------------------------~n~l~~~~~~-l~~ 221 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS------------------------------SNNFSTGIPF-LGD 221 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECC------------------------------SSCCCSCCCB-CTT
T ss_pred ccCCCCCEEECCCCcccccCC--cccCCcCCEEECc------------------------------CCcCCCCCcc-ccc
Confidence 455555555555554221111 2344444444211 1112222222 455
Q ss_pred CCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCC-CccccccCCcCcceEEEEeCCCCCCCCCC
Q 001281 742 KQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGEN-FPMWIGDLSFSKMEVLELQNCQNCTSLPS 820 (1108)
Q Consensus 742 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 820 (1108)
+++|+.|++++|...+..+. .+..+++|+.|++++|.... +|.. .+++|++|++++|.+.+.+|.
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~----------~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~ 287 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSR----------AISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPD 287 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHH----------HTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCC
T ss_pred CCCCCEEECcCCcCCCcccH----------HHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCH
Confidence 56666666665544322221 24455566666666655432 2221 345666666666655544442
Q ss_pred -CCC-CCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCC
Q 001281 821 -LSM-LGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSG 898 (1108)
Q Consensus 821 -l~~-l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 898 (1108)
+.. +++|++|++++|.....++..+ ..+++|+.|++.++.-...+. ...+..+++|++|++++| .+++
T Consensus 288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~------~~l~~L~~L~L~~n~l~~~ip---~~~l~~l~~L~~L~Ls~n-~l~~ 357 (768)
T 3rgz_A 288 FLSGACDTLTGLDLSGNHFYGAVPPFF------GSCSLLESLALSSNNFSGELP---MDTLLKMRGLKVLDLSFN-EFSG 357 (768)
T ss_dssp CSCTTCTTCSEEECCSSEEEECCCGGG------GGCTTCCEEECCSSEEEEECC---HHHHTTCTTCCEEECCSS-EEEE
T ss_pred HHHhhcCcCCEEECcCCcCCCccchHH------hcCCCccEEECCCCcccCcCC---HHHHhcCCCCCEEeCcCC-ccCc
Confidence 333 3666666666655433333222 345666666665542211111 112445666666666664 4444
Q ss_pred CCCCCC---C-CccEEEEccCCCccc---cCCC--CCcccEEEEeecCCcc--ccCCCCCCCccEEEEecCCcccccccC
Q 001281 899 KLPELL---P-SLEILVISKCADLVV---PFSS--FPMLCRLEIEECKGIT--CSTPIDCKLIESMTISNSSLQIYGCEG 967 (1108)
Q Consensus 899 ~~p~~l---~-~L~~L~l~~~~~l~~---~~~~--l~~L~~L~l~~c~~l~--~~~~~~l~~L~~L~l~~n~~~~~~~~~ 967 (1108)
.+|..+ + +|+.|++++|..... .+.. +++|++|++++|.... ...+..+++|+.|++++|.+...
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---- 433 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT---- 433 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC----
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc----
Confidence 555432 2 566666666553221 1111 4566666666665321 22345566666666665554321
Q ss_pred cccCCCCCCCCCCCCcEEEEcccCCCcccc--cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCcc
Q 001281 968 MIFNDPPAMDSKSLPTSVTISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMS 1045 (1108)
Q Consensus 968 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~ 1045 (1108)
.|..+..+++|+.|++++|.....++ +..+++|++|++++|.. ...+|..+.++++|++|+++ +|.-
T Consensus 434 ----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l------~~~~p~~l~~l~~L~~L~L~-~N~l 502 (768)
T 3rgz_A 434 ----IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL------TGEIPSGLSNCTNLNWISLS-NNRL 502 (768)
T ss_dssp ----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC------CSCCCGGGGGCTTCCEEECC-SSCC
T ss_pred ----ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc------cCcCCHHHhcCCCCCEEEcc-CCcc
Confidence 23334456666666666655443443 34566666666666663 33556666666666666666 3332
Q ss_pred ccccccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCccccc
Q 001281 1046 LVSFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKK 1099 (1108)
Q Consensus 1046 l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~ 1099 (1108)
...+|..+..+++|++|++++|+-...+|. .+..+++|+.|++++|+-...+|
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCC
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCC
Confidence 235566555666666666666543335555 55666666666666665333444
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-32 Score=336.54 Aligned_cols=504 Identities=16% Similarity=0.119 Sum_probs=286.9
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccch-hhhcC
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPE-STSSL 640 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L 640 (1108)
++++.|.+.++.. ..+++..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|. .++++
T Consensus 25 ~~l~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 25 TNITVLNLTHNQL--------RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp TTCSEEECCSSCC--------CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEECCCCCC--------CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 5788888876653 234556788999999999999999877 7789999999999999999999987 59999
Q ss_pred ccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCccCceee--CCCCCCCc--ccccccccc
Q 001281 641 MHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLSNFIV--GKDTGSGL--KDLKNLKFL 716 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~--~~~~~~~l--~~l~~L~~L 716 (1108)
++|++|++++|......|..++++++|++|++++|......|..++++++|++|..... .......+ ..+++|+.|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 99999999998644434467999999999999999844445566889999999853222 11111111 123455544
Q ss_pred CceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCC-ccc
Q 001281 717 HGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENF-PMW 795 (1108)
Q Consensus 717 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~ 795 (1108)
. + ..+.+....+..+..+.+|+.|.+..+... ... . ......+ ..++|+.|+++++..... |.+
T Consensus 177 ~----L----~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~---~~~-~--~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 177 E----L----SSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSL-T--EKLCLEL-ANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp E----C----TTCCCCCBCTTGGGGSSEECEEECTTCCCH---HHH-H--HHHHHHH-TTSCCCEEECTTSCCCEECTTT
T ss_pred E----C----CCCcccccChhhhhhhhhhhhhhccccccC---hhh-H--HHHHHHh-hhccccEEEccCCcccccChhH
Confidence 3 2 122333333444555556666655443321 000 0 0000000 123445555544443322 222
Q ss_pred cccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCccccc---------------------------
Q 001281 796 IGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYG--------------------------- 847 (1108)
Q Consensus 796 ~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~--------------------------- 847 (1108)
+.....++|+.|+|++|.+....| .++.+++|++|++++|......+..|.+
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence 222111235555555544433332 2444455555555444333222222111
Q ss_pred CcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCC-CCCCCCC------CCCCccEEEEccCCCcc-
Q 001281 848 EDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPK-FSGKLPE------LLPSLEILVISKCADLV- 919 (1108)
Q Consensus 848 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~p~------~l~~L~~L~l~~~~~l~- 919 (1108)
...+..+++|+.|++.++.- .......+..+++|++|++++|.. +. .++. ..++|+.|++++|....
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDI----PGIKSNMFTGLINLKYLSLSNSFTSLR-TLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCB----CCCCTTTTTTCTTCCEEECTTCBSCCC-EECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred hhhcccCCCCCEEECCCCcc----CCCChhHhccccCCcEEECCCCchhhh-hcchhhhcccccCcCceEECCCCCCCeE
Confidence 00122344555555544211 111122234455555555555421 10 1111 01234444444443322
Q ss_pred --ccCCCCCcccEEEEeecCCcc---ccCCCCCCCccEEEEecCCcccccccCc------------------ccCCCCCC
Q 001281 920 --VPFSSFPMLCRLEIEECKGIT---CSTPIDCKLIESMTISNSSLQIYGCEGM------------------IFNDPPAM 976 (1108)
Q Consensus 920 --~~~~~l~~L~~L~l~~c~~l~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~------------------~~~~~~~~ 976 (1108)
..+..+++|+.|++++|.... ...+..+++|+.|++++|.+..+..... ....|..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 123344555555555554321 1233445555555555544322210000 01224566
Q ss_pred CCCCCCcEEEEcccCCCcccc---cCCCCCccEEEEeccCCccccccccCCc----ccCCCCCCCcEeEeeccCcccccc
Q 001281 977 DSKSLPTSVTISNVLEFGKFL---KQGFQQVETLRIGNSEQIKSWLQFDKPE----QGLHVLSSPEDVSIEENCMSLVSF 1049 (1108)
Q Consensus 977 ~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~p----~~l~~l~~L~~L~l~~~c~~l~~l 1049 (1108)
..+++|+.|+++++. ++.++ +..+++|++|++++|.. ..+. ...+| ..+.++++|++|+++ .+.++.+
T Consensus 477 ~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~-~~~~~~~~~~~~~~l~~L~~L~L~--~N~l~~i 551 (680)
T 1ziw_A 477 QPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNL-ARLW-KHANPGGPIYFLKGLSHLHILNLE--SNGFDEI 551 (680)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-GGGG-STTSTTSCCCTTTTCTTCCEEECC--SSCCCCC
T ss_pred ccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCc-cccc-hhhccCCcchhhcCCCCCCEEECC--CCCCCCC
Confidence 788889999988864 44444 46788899999998873 1110 00112 237888999999998 6788888
Q ss_pred ccc-cccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCccccccc
Q 001281 1050 SEV-IFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKKQA 1101 (1108)
Q Consensus 1050 p~~-~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~~~ 1101 (1108)
|.. +.++++|+.|++++ ++++.+|...+..+++|+.|++++| +++.++..
T Consensus 552 ~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 602 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKK 602 (680)
T ss_dssp CTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHH
T ss_pred CHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChh
Confidence 874 55789999999976 5889999877888999999999998 57766543
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8e-33 Score=337.55 Aligned_cols=491 Identities=14% Similarity=0.102 Sum_probs=340.1
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCcccccc-chhhhcC
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSL-PESTSSL 640 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L 640 (1108)
+.++.|.+.++.. ..+.+..|.++++|++|+|++|.++.+ |..|+++++|++|++++|.++.+ |..++++
T Consensus 33 ~~l~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 33 NSTECLEFSFNVL--------PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TTCCEEECTTCCC--------SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCcEEEccCCcc--------CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 3678888776654 344566788999999999999998876 78899999999999999999866 6788999
Q ss_pred ccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCC-ccCCCCCCCCccCceee--CCCCCCCccccccccccC
Q 001281 641 MHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMP-YGMEKLKHLQTLSNFIV--GKDTGSGLKDLKNLKFLH 717 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~ 717 (1108)
++|++|++++|......|..++++++|++|++++|. +..++ ..+..+++|++|+.... ....+..+..+++|+.+.
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 999999999976443336778999999999999988 55542 33444888888853222 222223345555555321
Q ss_pred ceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhh-------------------hhhhhhhcCCCCCCC
Q 001281 718 GELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEV-------------------AKEHTVLDMLQPHTN 778 (1108)
Q Consensus 718 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------------------~~~~~~l~~l~~~~~ 778 (1108)
+.+. .+.+....+..+ ....|+.|+++++.......... ......+..+.+ .+
T Consensus 184 --L~l~----~n~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~~ 255 (606)
T 3t6q_A 184 --LNLN----GNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MS 255 (606)
T ss_dssp --EECT----TCCCCEECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-SE
T ss_pred --EecC----CCccCccChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc-Cc
Confidence 2221 222222223222 23467777776553110000000 000011111111 26
Q ss_pred CCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccc
Q 001281 779 LKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLE 858 (1108)
Q Consensus 779 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 858 (1108)
|+.|+++++....++..... .+++|+.|++++|.+....+.+..+++|++|++++|......+.. +..+++|+
T Consensus 256 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~ 328 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFH-CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS------ASNFPSLT 328 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTT-TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC------GGGCTTCS
T ss_pred eeEEEeecCccCccCHHHhc-cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh------hhccCcCC
Confidence 88899999888877765332 468999999999987654446889999999999998744333322 34689999
Q ss_pred eEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCC--C---CCCCCccEEEEccCCCcc---ccCCCCCcccE
Q 001281 859 TLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKL--P---ELLPSLEILVISKCADLV---VPFSSFPMLCR 930 (1108)
Q Consensus 859 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--p---~~l~~L~~L~l~~~~~l~---~~~~~l~~L~~ 930 (1108)
.|.+.++.....+ ....+..+++|++|++++| .+++.. | ..+++|++|++++|.... ..+..+++|++
T Consensus 329 ~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 329 HLSIKGNTKRLEL---GTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp EEECCSCSSCCBC---CSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred EEECCCCCccccc---chhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 9999886432222 2234678999999999996 444332 2 357899999999987543 34567899999
Q ss_pred EEEeecCCccc---cCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcc-----cccCCCC
Q 001281 931 LEIEECKGITC---STPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGK-----FLKQGFQ 1002 (1108)
Q Consensus 931 L~l~~c~~l~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----~~~~~l~ 1002 (1108)
|++++|..... ..+..+++|+.|++++|.+... .+..+..+++|++|++++|..-.. ..+..++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS--------SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT--------CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCc--------CHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence 99999874332 2367889999999998876543 344566899999999999764331 1256789
Q ss_pred CccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCcccccc-ccccccCCCcceEecccccCCCCCcccCCCCC
Q 001281 1003 QVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSF-SEVIFLMNNLRYLKIENSRALKSLPQEVMGNN 1081 (1108)
Q Consensus 1003 ~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l 1081 (1108)
+|++|++++|.. ....|..+..+++|++|+++ .+.++.+ |..+..+++| .|++++| .++.+|+..+..+
T Consensus 477 ~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l 546 (606)
T 3t6q_A 477 RLEILVLSFCDL------SSIDQHAFTSLKMMNHVDLS--HNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPIL 546 (606)
T ss_dssp TCCEEECTTSCC------CEECTTTTTTCTTCCEEECC--SSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHH
T ss_pred CccEEECCCCcc------CccChhhhccccCCCEEECC--CCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccC
Confidence 999999999984 34457889999999999998 5566655 4566689999 9999886 6788877678889
Q ss_pred CCccEEeeecCcCcccccc
Q 001281 1082 AQLEKLFIKYCDNIHRKKQ 1100 (1108)
Q Consensus 1082 ~~L~~L~l~~c~~L~~~~~ 1100 (1108)
++|+.|++++|| +.+-|.
T Consensus 547 ~~L~~L~l~~N~-~~c~c~ 564 (606)
T 3t6q_A 547 SQQRTINLRQNP-LDCTCS 564 (606)
T ss_dssp HTSSEEECTTCC-EECSGG
T ss_pred CCCCEEeCCCCC-ccccCC
Confidence 999999999987 555443
No 10
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=337.51 Aligned_cols=303 Identities=22% Similarity=0.331 Sum_probs=231.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccc-ccccc-ceeEEEEeCCCCCHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAV-SDIKF-DIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~f-~~~~wv~~~~~~~~~~~~~ 260 (1108)
+..||||++++++|.++|.... +..++|+|+||||+||||||++++++.+. .. +| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK---GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEG-CFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST---TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHH-HCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc---CCCceEEEEcCCCCCHHHHHHHHHhchhHHHh-hCCCceEEEECCCC-chHHHHH
Confidence 4579999999999999997532 34689999999999999999999998654 44 67 58999999876 3333333
Q ss_pred H---HHHHhcCC----CCCcccHHHHHHHHHHHhCC--ceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh
Q 001281 261 A---LLESITCK----PCDLKALNEVQVQLQKALDG--KKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH 331 (1108)
Q Consensus 261 ~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 331 (1108)
. ++..++.. .....+.+.....+...+.+ +++||||||||+. ..++ ...+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~-------~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK-------AFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH-------TTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH-------HhcCCCeEEEECCCcH
Confidence 3 34455421 12234566777778877765 7999999999863 2222 2367899999999998
Q ss_pred hhhhccccceeeC---CCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCCCChhHHH
Q 001281 332 VASTMGSVEHYNL---SLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWE 408 (1108)
Q Consensus 332 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~ 408 (1108)
++..+.. ..+.+ ++|+++|+++||...++.. ..... +.+.+|+++|+|+||||+.+|+.++... ..|.
T Consensus 269 ~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~----~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 269 VTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK--KADLP----EQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSC----THHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCC--ccccc----HHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 8766542 33443 6899999999999988642 12223 6788999999999999999999998763 3687
Q ss_pred HHHhhccCCC----C-----CCCChhHHHHHhhhcCChhHHHHHhHhcccCCCceechHHHHHHHHHcCCccCCCCchhH
Q 001281 409 DILNSNIWDL----P-----EQSGVQPVLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQL 479 (1108)
Q Consensus 409 ~~l~~~~~~~----~-----~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 479 (1108)
..++...... . ....+..++..||+.||++.|.||++||+||+++.|+.+.++..|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------ 407 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------ 407 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------
Confidence 7665432211 1 224688999999999999999999999999999999999999999432
Q ss_pred HHHHHHHHHHHHhCccccccCC-CCCeEEEchhHHHHHHHhh
Q 001281 480 EDWGSECFHDLVSRSIFQQSSG-DGSKFVMHDLVHDLAQLVS 520 (1108)
Q Consensus 480 ~~~~~~~~~~L~~~~li~~~~~-~~~~~~~H~lv~~~a~~~~ 520 (1108)
.+.+..++++|+++||++.... ....|+||+++|++++...
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 2457889999999999986543 2347999999999998874
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-32 Score=333.25 Aligned_cols=485 Identities=16% Similarity=0.127 Sum_probs=353.3
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCcccccc-chhhhcC
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSL-PESTSSL 640 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L 640 (1108)
++++.|.+.++.. ..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++
T Consensus 32 ~~l~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPL--------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCcCEEECCCCCc--------CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 6788888876654 345566789999999999999999988 67899999999999999999988 7889999
Q ss_pred ccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCC-cCCccCCCCCCCCccCcee--eCCCCCCCccccccccccC
Q 001281 641 MHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLE-GMPYGMEKLKHLQTLSNFI--VGKDTGSGLKDLKNLKFLH 717 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~~~~--~~~~~~~~l~~l~~L~~L~ 717 (1108)
++|++|++++|......|..++++++|++|++++|.... .+|..++++++|++|+... ........+..+.+|+..-
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 999999999986444444779999999999999998332 5788999999999985332 2223344455666555311
Q ss_pred ceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCC------
Q 001281 718 GELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGEN------ 791 (1108)
Q Consensus 718 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~------ 791 (1108)
..+.+. .+.+....+..+.. .+|+.|++++|.... ......+..+++|+.+.+.......
T Consensus 184 ~~L~l~----~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~---------~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 184 LSLDMS----LNPIDFIQDQAFQG-IKLHELTLRGNFNSS---------NIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp CEEECT----TCCCCEECTTTTTT-CEEEEEEEESCCSCH---------HHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ceeecc----CCCcceeCcccccC-ceeeeeeccCCccch---------hHHHHHhccccccccccccccccccCCcccc
Confidence 123322 23333333333433 489999999886421 1122234556777777776443221
Q ss_pred Cc-cccccCCcCcceEEEE-eCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCccc
Q 001281 792 FP-MWIGDLSFSKMEVLEL-QNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWE 869 (1108)
Q Consensus 792 ~p-~~~~~~~l~~L~~L~L-~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 869 (1108)
++ ..+....--+++.+++ ..+.+.+.+|.+..+++|+.|++++|.. ..++ .+..+++|+.|.+.++.- .
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-------~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-------DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-------CCCTTCCCSEEEEESCCC-S
T ss_pred cChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhh-------hccccccCCEEEcccccC-c
Confidence 11 1111111125777888 4556666777789999999999999874 4443 235688999999998754 3
Q ss_pred ccccccCCccccCCcccEEeecCCCCCCCCCCCCCCCccEEEEccCCCcc-----ccCCCCCcccEEEEeecCCccc-cC
Q 001281 870 CWDTKENGLLAGFSSLRELSILKCPKFSGKLPELLPSLEILVISKCADLV-----VPFSSFPMLCRLEIEECKGITC-ST 943 (1108)
Q Consensus 870 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~-----~~~~~l~~L~~L~l~~c~~l~~-~~ 943 (1108)
.++ .+ .+++|+.|++++|..+.......+++|+.|++++|.... ..+..+++|++|++++|..... ..
T Consensus 321 ~lp-----~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 394 (606)
T 3vq2_A 321 QFP-----TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394 (606)
T ss_dssp SCC-----CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC
T ss_pred ccc-----cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhh
Confidence 332 23 899999999999865543323468999999999997542 2345789999999999984332 45
Q ss_pred CCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc--cCCCCCccEEEEeccCCccccccc
Q 001281 944 PIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQF 1021 (1108)
Q Consensus 944 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~ 1021 (1108)
+..+++|+.|++++|.+..... ...+..+++|+.|++++|......+ +..+++|++|++++|.. .
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------~ 461 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTE-------FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF------K 461 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTT-------TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE------G
T ss_pred ccCCCCCCeeECCCCccCCccC-------hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC------C
Confidence 6789999999999887665421 1355689999999999987555444 57889999999999983 2
Q ss_pred c-CCcccCCCCCCCcEeEeeccCccccccc-cccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCccccc
Q 001281 1022 D-KPEQGLHVLSSPEDVSIEENCMSLVSFS-EVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKK 1099 (1108)
Q Consensus 1022 ~-~~p~~l~~l~~L~~L~l~~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~ 1099 (1108)
. .+|..+.++++|++|+++ .+.++.++ ..+..+++|++|++++| .++.+++..+..+++|++|++++|. ++.+|
T Consensus 462 ~~~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p 537 (606)
T 3vq2_A 462 DNTLSNVFANTTNLTFLDLS--KCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSK 537 (606)
T ss_dssp GGEECSCCTTCTTCCEEECT--TSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEE
T ss_pred CcchHHhhccCCCCCEEECC--CCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccC
Confidence 2 268889999999999998 55676664 45678999999999997 6777755589999999999999995 77777
Q ss_pred cc
Q 001281 1100 QA 1101 (1108)
Q Consensus 1100 ~~ 1101 (1108)
..
T Consensus 538 ~~ 539 (606)
T 3vq2_A 538 GI 539 (606)
T ss_dssp SC
T ss_pred Hh
Confidence 64
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-31 Score=332.51 Aligned_cols=504 Identities=13% Similarity=0.079 Sum_probs=322.4
Q ss_pred cccceeEEEeecCCCCcccccccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-Ccch
Q 001281 536 RFERVRHSSYTRGHFDSKIRFESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSI 614 (1108)
Q Consensus 536 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i 614 (1108)
.+..++++.+..+.+.. .....+..+++|+.|.+..+.. ...+.+..|.++++|++|+|++|.++.+ |..|
T Consensus 22 lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~-------~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYT-------PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCC-------CCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCC-------ccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 55667777777665433 2344567777777777755421 1233355677777778888877777765 6777
Q ss_pred hcCCCCcEEEeeCccccc-cchh--hhcCccCcEeeecCCcCCcccc-hhccCCCCccEEeecCCCCCCcCCccCCCC--
Q 001281 615 KELKLLRYLNVAGTQIRS-LPES--TSSLMHLRVLILRDCSRLTRLP-SKMWNLINLRHLDIEGANSLEGMPYGMEKL-- 688 (1108)
Q Consensus 615 ~~l~~L~~L~Ls~~~i~~-lp~~--i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L-- 688 (1108)
+++++|++|+|++|.++. +|.. ++++++|++|++++|......| ..++++++|++|++++|......|..++.+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 777778888887777764 4544 7777778888887765433322 457777778888777776433445555555
Q ss_pred CCCCccCcee--eCCCCCCCcccccc------ccccCceeEecCccCCCChhhhhhhcc---CCCCCCCceEEEecCCCC
Q 001281 689 KHLQTLSNFI--VGKDTGSGLKDLKN------LKFLHGELCISGLQNVNDLREAGEAML---CEKQNLQALSLQWGSQFD 757 (1108)
Q Consensus 689 ~~L~~L~~~~--~~~~~~~~l~~l~~------L~~L~~~l~i~~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~ 757 (1108)
++|+.|.... .....+..+..+.+ |+.|. +.+ +.+....+..+ .....+..|.+..+....
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~----Ls~----n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD----VSG----NGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEB----CSS----CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEe----cCC----CcCchhHHHHHHhhcCcccccceecccccccc
Confidence 5666663211 11111222222222 33332 111 11111111111 112345555554221100
Q ss_pred CChhh--hhhhhhhhcCCCCCCCCCeEEEeecCCCCCcc-ccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEec
Q 001281 758 SSREE--VAKEHTVLDMLQPHTNLKKLAITSYSGENFPM-WIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIK 833 (1108)
Q Consensus 758 ~~~~~--~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 833 (1108)
..... .......+..+ ..++|+.|++++|....++. .+. .+++|+.|+|++|.+....| .+..+++|++|+++
T Consensus 246 ~~~~~~l~~~~~~~f~~l-~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGL-ARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp SSSCSSSTTGGGTTTTTT-TTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred cccccccCCCChhhhhcc-ccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 00000 00001111111 13689999999988776643 343 46899999999998877655 58899999999999
Q ss_pred CCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCCCCCCccEEEEc
Q 001281 834 GMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPELLPSLEILVIS 913 (1108)
Q Consensus 834 ~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~ 913 (1108)
+|......+..| ..+++|+.|++.+.. +..+ ....+..+++|+.|++++| .++ .++. +++|+.|+++
T Consensus 323 ~N~l~~~~~~~~------~~l~~L~~L~L~~N~-i~~~---~~~~~~~l~~L~~L~Ls~N-~l~-~i~~-~~~L~~L~l~ 389 (844)
T 3j0a_A 323 YNLLGELYSSNF------YGLPKVAYIDLQKNH-IAII---QDQTFKFLEKLQTLDLRDN-ALT-TIHF-IPSIPDIFLS 389 (844)
T ss_dssp SCCCSCCCSCSC------SSCTTCCEEECCSCC-CCCC---CSSCSCSCCCCCEEEEETC-CSC-CCSS-CCSCSEEEEE
T ss_pred CCCCCccCHHHh------cCCCCCCEEECCCCC-CCcc---ChhhhcCCCCCCEEECCCC-CCC-cccC-CCCcchhccC
Confidence 987544334333 458899999998752 2222 2334678999999999995 564 4444 8899999999
Q ss_pred cCCCccccCCCCCcccEEEEeecCCcccc---CCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEccc
Q 001281 914 KCADLVVPFSSFPMLCRLEIEECKGITCS---TPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNV 990 (1108)
Q Consensus 914 ~~~~l~~~~~~l~~L~~L~l~~c~~l~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 990 (1108)
+|..... .....+++.|++++|...... .+..+++|+.|++++|.+...... ..+..+++|+.|+++++
T Consensus 390 ~N~l~~l-~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 390 GNKLVTL-PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-------QTPSENPSLEQLFLGEN 461 (844)
T ss_dssp SCCCCCC-CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS-------SSSCSCTTCCBCEEESC
T ss_pred CCCcccc-cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccc-------cccccCCccccccCCCC
Confidence 9886532 223568899999988744322 234789999999999987654221 12336889999999986
Q ss_pred CCCc----c---cccCCCCCccEEEEeccCCccccccccCC-cccCCCCCCCcEeEeeccCccccccccccccCCCcceE
Q 001281 991 LEFG----K---FLKQGFQQVETLRIGNSEQIKSWLQFDKP-EQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYL 1062 (1108)
Q Consensus 991 ~~l~----~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L 1062 (1108)
..-. . -.+..+++|++|++++|. +..+ |..+.++++|++|+++ .|.++.+|...+. ++|+.|
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls--~N~l~~l~~~~~~-~~L~~L 531 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNY-------LNSLPPGVFSHLTALRGLSLN--SNRLTVLSHNDLP-ANLEIL 531 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHHH-------HTTCCTTSSSSCCSCSEEEEE--SCCCSSCCCCCCC-SCCCEE
T ss_pred ccccccccccchhhhcCcccccEEECCCCc-------ccccChhHccchhhhheeECC--CCCCCccChhhhh-ccccEE
Confidence 4321 1 114678999999999997 4444 5668999999999998 7799999987663 999999
Q ss_pred ecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1063 KIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1063 ~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
+++++ .++.+++.. +++|+.|+++++|
T Consensus 532 ~Ls~N-~l~~~~~~~---~~~L~~l~l~~Np 558 (844)
T 3j0a_A 532 DISRN-QLLAPNPDV---FVSLSVLDITHNK 558 (844)
T ss_dssp EEEEE-CCCCCCSCC---CSSCCEEEEEEEC
T ss_pred ECCCC-cCCCCChhH---hCCcCEEEecCCC
Confidence 99885 787776644 4689999999876
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-31 Score=327.10 Aligned_cols=490 Identities=14% Similarity=0.114 Sum_probs=349.9
Q ss_pred cccccceeEEEeecCCCCcccccccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-Cc
Q 001281 534 SRRFERVRHSSYTRGHFDSKIRFESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PN 612 (1108)
Q Consensus 534 ~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~ 612 (1108)
...+..++++.+..+.+... ....+..+++|++|.+.++.. ..+.+..|.++++|++|+|++|.++.+ |.
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQI--------YWIHEDTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred CCCCCcCcEEEccCCccCcC-ChhHhccCccceEEECCCCcc--------ceeChhhccCccccCeeeCCCCcccccChh
Confidence 34566788999888776542 345788999999999887654 345567789999999999999999876 78
Q ss_pred chhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCc-ccchhccCCCCccEEeecCCCCCCcC-CccCCCCC
Q 001281 613 SIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLT-RLPSKMWNLINLRHLDIEGANSLEGM-PYGMEKLK 689 (1108)
Q Consensus 613 ~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~ 689 (1108)
.|+++++|++|++++|.++.+ |..++++++|++|++++|.... ..|. +..+++|++|++++|. +..+ |..++.++
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNA-IHYLSKEDMSSLQ 177 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSC-CCEECHHHHHTTT
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCc-ccccChhhhhhhc
Confidence 899999999999999999988 6789999999999999976443 2244 5559999999999998 5555 45578888
Q ss_pred CCC--ccC--ceeeCCCCCCCccccccccccCc-------------------eeEecCccCCCChhhhhhhccCCCC--C
Q 001281 690 HLQ--TLS--NFIVGKDTGSGLKDLKNLKFLHG-------------------ELCISGLQNVNDLREAGEAMLCEKQ--N 744 (1108)
Q Consensus 690 ~L~--~L~--~~~~~~~~~~~l~~l~~L~~L~~-------------------~l~i~~l~~~~~~~~~~~~~l~~~~--~ 744 (1108)
+|+ .|+ .+......+..+ ....|+.|.. .+.......... .......+..+. +
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~-~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD-EDISPAVFEGLCEMS 255 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC-CCCCGGGGGGGGGSE
T ss_pred ccceeEEecCCCccCccChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccc-cccChhHhchhhcCc
Confidence 888 332 222111111111 1122222210 000000000000 001111122222 6
Q ss_pred CCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCCC
Q 001281 745 LQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSM 823 (1108)
Q Consensus 745 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~ 823 (1108)
|+.|+++.|......+ ..+..+++|++|++++|....+|.++. .+++|++|++++|.+....| .+..
T Consensus 256 L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~l~~n~l~~lp~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 256 VESINLQKHYFFNISS----------NTFHCFSGLQELDLTATHLSELPSGLV--GLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp EEEEECTTCCCSSCCT----------TTTTTCTTCSEEECTTSCCSCCCSSCC--SCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred eeEEEeecCccCccCH----------HHhccccCCCEEeccCCccCCCChhhc--ccccCCEEECccCCcCcCchhhhhc
Confidence 7788887776533222 226678999999999999999999886 46899999999998876655 6889
Q ss_pred CCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC-
Q 001281 824 LGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE- 902 (1108)
Q Consensus 824 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~- 902 (1108)
+++|++|++++|.....++.. .+..+++|+.|++.++.--.... ....+..+++|++|++++| .+.+..|.
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 395 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTG-----CLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYN-EPLSLKTEA 395 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSS-----TTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSC-SCEEECTTT
T ss_pred cCcCCEEECCCCCcccccchh-----hhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCC-cCCcCCHHH
Confidence 999999999999765455433 23468999999998854321110 1234678999999999996 55444454
Q ss_pred --CCCCccEEEEccCCCccc----cCCCCCcccEEEEeecCCcc--ccCCCCCCCccEEEEecCCcccccccCcccCCCC
Q 001281 903 --LLPSLEILVISKCADLVV----PFSSFPMLCRLEIEECKGIT--CSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPP 974 (1108)
Q Consensus 903 --~l~~L~~L~l~~~~~l~~----~~~~l~~L~~L~l~~c~~l~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 974 (1108)
.+++|++|++++|..... .+..+++|++|++++|.... ...+..+++|+.|++++|.+...... .+.
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~ 470 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-----KTN 470 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-----SSC
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-----cch
Confidence 468999999999986432 26678999999999997543 23467899999999998877542111 123
Q ss_pred CCCCCCCCcEEEEcccCCCcccc--cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccc
Q 001281 975 AMDSKSLPTSVTISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEV 1052 (1108)
Q Consensus 975 ~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~ 1052 (1108)
.+..+++|+.|++++|......+ +..+++|++|++++|.. ....|..+.++++| .|+++ .+.++.++..
T Consensus 471 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l------~~~~~~~l~~l~~L-~L~L~--~N~l~~~~~~ 541 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL------TSSSIEALSHLKGI-YLNLA--SNHISIILPS 541 (606)
T ss_dssp GGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC------CGGGGGGGTTCCSC-EEECC--SSCCCCCCGG
T ss_pred hhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc------CcCChhHhCccccc-EEECc--CCcccccCHh
Confidence 45689999999999985443333 57889999999999985 45568899999999 99998 6678777664
Q ss_pred -cccCCCcceEecccccCC
Q 001281 1053 -IFLMNNLRYLKIENSRAL 1070 (1108)
Q Consensus 1053 -~~~l~~L~~L~l~~c~~l 1070 (1108)
+..+++|+.|++++|+-.
T Consensus 542 ~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 542 LLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp GHHHHHTSSEEECTTCCEE
T ss_pred hcccCCCCCEEeCCCCCcc
Confidence 557899999999997643
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.3e-32 Score=324.52 Aligned_cols=454 Identities=18% Similarity=0.169 Sum_probs=284.1
Q ss_pred CcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 595 KKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
+.|++|+|++|.++.+ |..|.++++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4566666666666554 445566666666666666666553 44566666666666665432222333566666666666
Q ss_pred cCCCCCC--cCCccCCCCCCCCccCceeeC---CCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCc
Q 001281 673 EGANSLE--GMPYGMEKLKHLQTLSNFIVG---KDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQA 747 (1108)
Q Consensus 673 ~~~~~~~--~lp~~i~~L~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 747 (1108)
++|. +. ..|..++++++|++|+..... ......+..+++|+.|. + ..+.+....+..+..+++|+.
T Consensus 106 s~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~----L----~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 106 MGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE----I----KALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE----E----EETTCCEECTTTTTTCSEEEE
T ss_pred CCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee----c----cCCcccccChhhhhccccCce
Confidence 6665 33 234455566666655432221 11122344444444442 1 112233334445666777777
Q ss_pred eEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCC---ccccccCCcCcceEEEEeCCCCCCCCC-----
Q 001281 748 LSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENF---PMWIGDLSFSKMEVLELQNCQNCTSLP----- 819 (1108)
Q Consensus 748 L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~---p~~~~~~~l~~L~~L~L~~~~~~~~l~----- 819 (1108)
|++++|..... +.. . +..+++|+.|++++|....+ |.++.. .+++|+.|++++|.+.+..+
T Consensus 177 L~l~~n~~~~~-~~~------~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 177 LTLHLSESAFL-LEI------F---ADILSSVRYLELRDTNLARFQFSPLPVDE-VSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp EEEECSBSTTH-HHH------H---HHSTTTBSEEEEESCBCTTCCCCCCSSCC-CCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred EecccCccccc-chh------h---HhhcccccEEEccCCccccccccccchhh-hhhcccceeccccccchhHHHHHHH
Confidence 77776653211 110 0 12356777788877776554 222222 24677888887776533211
Q ss_pred CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccc-cccCCccccCCcccEEeecCCCCCCC
Q 001281 820 SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWD-TKENGLLAGFSSLRELSILKCPKFSG 898 (1108)
Q Consensus 820 ~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~ 898 (1108)
.+..+++|+.|++++|.......-.......+..+++|+.|.+.++.--.... .........+++|+.|++++| +++
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~- 323 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVF- 323 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCC-
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccc-
Confidence 23556778888887775322111000011223457778888777643211100 000011234678999999996 564
Q ss_pred CCCC----CCCCccEEEEccCCCccc------cCCCCCcccEEEEeecCCccc----cCCCCCCCccEEEEecCCccccc
Q 001281 899 KLPE----LLPSLEILVISKCADLVV------PFSSFPMLCRLEIEECKGITC----STPIDCKLIESMTISNSSLQIYG 964 (1108)
Q Consensus 899 ~~p~----~l~~L~~L~l~~~~~l~~------~~~~l~~L~~L~l~~c~~l~~----~~~~~l~~L~~L~l~~n~~~~~~ 964 (1108)
.+|. .+++|+.|++++|..... .+..+++|+.|++++|..... ..+..+++|+.|++++|.+..+
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l- 402 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM- 402 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-
Confidence 6774 478999999999987542 256789999999999975433 2367899999999999887643
Q ss_pred ccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCc
Q 001281 965 CEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCM 1044 (1108)
Q Consensus 965 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~ 1044 (1108)
|..+..+++|++|++++|. ++.++....++|++|++++|. +...+ ..+++|++|+++ .|
T Consensus 403 --------p~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~-------l~~~~---~~l~~L~~L~Ls--~N 461 (549)
T 2z81_A 403 --------PDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNN-------LDSFS---LFLPRLQELYIS--RN 461 (549)
T ss_dssp --------CSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSC-------CSCCC---CCCTTCCEEECC--SS
T ss_pred --------ChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCC-------hhhhc---ccCChhcEEECC--CC
Confidence 3455678999999999975 666665556799999999997 44443 578999999998 67
Q ss_pred cccccccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcC
Q 001281 1045 SLVSFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDN 1094 (1108)
Q Consensus 1045 ~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~ 1094 (1108)
.++.+|... .+++|++|++++| .++.+|.+.+..+++|+.|++++|+-
T Consensus 462 ~l~~ip~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 462 KLKTLPDAS-LFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCSSCCCGG-GCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ccCcCCCcc-cCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 899999854 5999999999985 78888887789999999999999973
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=323.70 Aligned_cols=487 Identities=16% Similarity=0.105 Sum_probs=340.7
Q ss_pred CCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcc-cccc-CcchhcCCCCcEEEeeCcccccc-chhh
Q 001281 561 EVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYY-VTQL-PNSIKELKLLRYLNVAGTQIRSL-PEST 637 (1108)
Q Consensus 561 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~l~~L~~L~Ls~~~i~~l-p~~i 637 (1108)
-.++++.|.+.++.. ..+.+..|.++++|++|+|++|. +..+ |..|+++++|++|+|++|.++.+ |..+
T Consensus 22 lp~~l~~LdLs~N~i--------~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI--------RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCC--------CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCEEECCCCcC--------CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 457899998887654 34456678999999999999995 5567 78899999999999999999977 7889
Q ss_pred hcCccCcEeeecCCcCCcccchh--ccCCCCccEEeecCCCCCCcCC--ccCCCCCCCCccCceee--CCCCCCCcccc-
Q 001281 638 SSLMHLRVLILRDCSRLTRLPSK--MWNLINLRHLDIEGANSLEGMP--YGMEKLKHLQTLSNFIV--GKDTGSGLKDL- 710 (1108)
Q Consensus 638 ~~L~~L~~L~l~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~~~~~--~~~~~~~l~~l- 710 (1108)
+++++|++|++++|.....+|.. ++++++|++|++++|. +..++ ..++++++|++|+.... .......+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 99999999999998765556665 8999999999999998 54443 46899999999863322 22222334444
Q ss_pred -ccccccCceeEecCccCCCChhhhhhhccCCCC------CCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEE
Q 001281 711 -KNLKFLHGELCISGLQNVNDLREAGEAMLCEKQ------NLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLA 783 (1108)
Q Consensus 711 -~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~ 783 (1108)
++|+.|. +. .+.+....+..+..+. .|+.|++++|......+.. +.......++..|.
T Consensus 173 ~~~L~~L~----L~----~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-------~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 173 GKTLSFFS----LA----ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN-------FSNAISKSQAFSLI 237 (844)
T ss_dssp HCSSCCCE----EC----CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG-------GGGTSCSCCBSEEE
T ss_pred CCccceEE----CC----CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHH-------HHhhcCccccccee
Confidence 4555553 21 1222222222333333 3888998877543322211 11122335677777
Q ss_pred EeecCC---------CCC-ccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCcccC
Q 001281 784 ITSYSG---------ENF-PMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILN 852 (1108)
Q Consensus 784 l~~~~~---------~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~ 852 (1108)
+..+.. ... +..+.....++|+.|+|++|.+....+ .+..+++|+.|+|++|......+..| .
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~------~ 311 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF------Y 311 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT------T
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh------c
Confidence 652211 111 112222224789999999998876655 48899999999999987555545433 4
Q ss_pred cCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCC---CCCCCccEEEEccCCCccccCCCCCccc
Q 001281 853 TFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLP---ELLPSLEILVISKCADLVVPFSSFPMLC 929 (1108)
Q Consensus 853 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l~~~~~~l~~L~ 929 (1108)
.+++|+.|++.++.- ... ....+..+++|+.|++++| .+.+..+ ..+++|+.|++++|... .++.+++|+
T Consensus 312 ~l~~L~~L~Ls~N~l-~~~---~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~L~ 384 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLL-GEL---YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALT--TIHFIPSIP 384 (844)
T ss_dssp TCSSCCEEEEESCCC-SCC---CSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSC--CCSSCCSCS
T ss_pred CCCCCCEEECCCCCC-Ccc---CHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCC--cccCCCCcc
Confidence 588999999988532 222 2345778999999999996 6653333 24789999999999765 344589999
Q ss_pred EEEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCccc---ccCCCCCccE
Q 001281 930 RLEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKF---LKQGFQQVET 1006 (1108)
Q Consensus 930 ~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~---~~~~l~~L~~ 1006 (1108)
.|++++|.....+ ....+++.|++++|.+..+.... .+..+++|+.|+++++..-... ....+++|+.
T Consensus 385 ~L~l~~N~l~~l~--~~~~~l~~L~ls~N~l~~l~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~ 455 (844)
T 3j0a_A 385 DIFLSGNKLVTLP--KINLTANLIHLSENRLENLDILY-------FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455 (844)
T ss_dssp EEEEESCCCCCCC--CCCTTCCEEECCSCCCCSSTTHH-------HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCB
T ss_pred hhccCCCCccccc--ccccccceeecccCccccCchhh-------hhhcCCccceeeCCCCcccccccccccccCCcccc
Confidence 9999999855432 33678999999999887653321 1237899999999987533211 1356789999
Q ss_pred EEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccc-cccCCCcceEecccccCCCCCcccCCCCCCCcc
Q 001281 1007 LRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENSRALKSLPQEVMGNNAQLE 1085 (1108)
Q Consensus 1007 L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~ 1085 (1108)
|++++|.. .........+..|.++++|++|+++ .|.++.+|.. +..+++|+.|+|++| +++.+|...+. ++|+
T Consensus 456 L~Ls~N~l-~~~~~~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~ 529 (844)
T 3j0a_A 456 LFLGENML-QLAWETELCWDVFEGLSHLQVLYLN--HNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLE 529 (844)
T ss_dssp CEEESCCC-SSSCCSCCCSSCSSCBCCEECCCCC--HHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCC
T ss_pred ccCCCCcc-ccccccccchhhhcCcccccEEECC--CCcccccChhHccchhhhheeECCCC-CCCccChhhhh--cccc
Confidence 99999983 1110012334678899999999998 6788888875 458999999999885 89999885554 8999
Q ss_pred EEeeecCcCcccccc
Q 001281 1086 KLFIKYCDNIHRKKQ 1100 (1108)
Q Consensus 1086 ~L~l~~c~~L~~~~~ 1100 (1108)
.|++++|. |+..+.
T Consensus 530 ~L~Ls~N~-l~~~~~ 543 (844)
T 3j0a_A 530 ILDISRNQ-LLAPNP 543 (844)
T ss_dssp EEEEEEEC-CCCCCS
T ss_pred EEECCCCc-CCCCCh
Confidence 99999984 555443
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=314.46 Aligned_cols=259 Identities=16% Similarity=0.158 Sum_probs=178.0
Q ss_pred cceEEEEeCC-CCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccc
Q 001281 803 KMEVLELQNC-QNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLA 880 (1108)
Q Consensus 803 ~L~~L~L~~~-~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 880 (1108)
.++.++++++ ...+..| .+..+++|+.|++++|. +..++..+ ..+ +|+.|.+.++.- ..++ ..
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~------~~~-~L~~L~l~~n~~-~~l~------~~ 322 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFS------YNF-GWQHLELVNCKF-GQFP------TL 322 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCC------SCC-CCSEEEEESCBC-SSCC------BC
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhh------ccC-CccEEeeccCcc-cccC------cc
Confidence 3555666655 3333333 35666777777776664 22333222 223 666676665432 1211 24
Q ss_pred cCCcccEEeecCCCCCCCCCC-CCCCCccEEEEccCCCcc-----ccCCCCCcccEEEEeecCCccc-cCCCCCCCccEE
Q 001281 881 GFSSLRELSILKCPKFSGKLP-ELLPSLEILVISKCADLV-----VPFSSFPMLCRLEIEECKGITC-STPIDCKLIESM 953 (1108)
Q Consensus 881 ~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l~-----~~~~~l~~L~~L~l~~c~~l~~-~~~~~l~~L~~L 953 (1108)
.+++|+.|++.+|. +.+..+ ..+++|++|++++|.... ..+..+++|++|++++|..... ..+..+++|+.|
T Consensus 323 ~l~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 401 (570)
T 2z63_A 323 KLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401 (570)
T ss_dssp BCSSCCEEEEESCB-SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred cccccCEEeCcCCc-cccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEE
Confidence 57778888887764 333343 357788888888876542 2244678899999988874332 226678999999
Q ss_pred EEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc--cCCCCCccEEEEeccCCccccccc-cCCcccCCC
Q 001281 954 TISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQF-DKPEQGLHV 1030 (1108)
Q Consensus 954 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~-~~~p~~l~~ 1030 (1108)
++++|.+.... ....+..+++|++|++++|......+ +..+++|++|++++|.. . ..+|..+..
T Consensus 402 ~l~~n~l~~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------~~~~~p~~~~~ 468 (570)
T 2z63_A 402 DFQHSNLKQMS-------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF------QENFLPDIFTE 468 (570)
T ss_dssp ECTTSEEESCT-------TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE------GGGEECSCCTT
T ss_pred EccCCcccccc-------chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcC------ccccchhhhhc
Confidence 99977665431 12345588999999999986544443 57789999999999983 2 257888999
Q ss_pred CCCCcEeEeeccCcccccc-ccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1031 LSSPEDVSIEENCMSLVSF-SEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1031 l~~L~~L~l~~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
+++|++|+++ .+.++.+ |..+..+++|++|++++| .++.+|...+..+++|++|++++|+
T Consensus 469 l~~L~~L~l~--~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 469 LRNLTFLDLS--QCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECT--TSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEECC--CCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 9999999998 5567776 667778999999999886 7888887788999999999999986
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=308.39 Aligned_cols=430 Identities=14% Similarity=0.102 Sum_probs=288.7
Q ss_pred CcccEEEecCccccccC-cchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 595 KKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
++|++|+|++|.++.++ ..|.++++|++|++++|.++.+ |..++++++|++|++++|. +..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 67777888887777664 5677777888888888777766 5677777888888887754 5567765 6777888888
Q ss_pred cCCCCCCc--CCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCC--Cce
Q 001281 673 EGANSLEG--MPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNL--QAL 748 (1108)
Q Consensus 673 ~~~~~~~~--lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L--~~L 748 (1108)
++|. +.. +|..++++++|++|+.... .+.. ..+..+++| +.|
T Consensus 98 ~~N~-l~~~~~p~~~~~l~~L~~L~L~~n------------------------------~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 98 SFNA-FDALPICKEFGNMSQLKFLGLSTT------------------------------HLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp CSSC-CSSCCCCGGGGGCTTCCEEEEEES------------------------------SCCG---GGGGGGTTSCEEEE
T ss_pred cCCc-cccccchhhhccCCcceEEEecCc------------------------------ccch---hhccccccceeeEE
Confidence 7776 433 4566666666666642211 0111 123344556 888
Q ss_pred EEEecCC--CCCChhhhhhhhhhhcCCCCCC-CCCeEEEeecCCC-CCccccccCCcCcceEEEEeCCC-------CCCC
Q 001281 749 SLQWGSQ--FDSSREEVAKEHTVLDMLQPHT-NLKKLAITSYSGE-NFPMWIGDLSFSKMEVLELQNCQ-------NCTS 817 (1108)
Q Consensus 749 ~l~~~~~--~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~-------~~~~ 817 (1108)
++++|.. ....+. .+..+. +...+++.++... .++.... ..+++|+.|++++|. ..+.
T Consensus 144 ~l~~n~l~~~~~~~~----------~l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~ 212 (520)
T 2z7x_B 144 LLVLGETYGEKEDPE----------GLQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSI 212 (520)
T ss_dssp EEEECTTTTSSCCTT----------TTTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred Eeecccccccccccc----------cccccccceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecc
Confidence 9888765 221111 122221 1123333444322 2222222 146788888888886 3344
Q ss_pred CCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCcc-----ccCCcccEEeecC
Q 001281 818 LPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLL-----AGFSSLRELSILK 892 (1108)
Q Consensus 818 l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-----~~~~~L~~L~l~~ 892 (1108)
+|.++.+++|+.|++.+|....... .+.......++|+.|++.++.--..+ +..+ ..+++|+.+++.+
T Consensus 213 ~~~l~~l~~L~~L~l~~~~l~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~----p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 213 LAKLQTNPKLSNLTLNNIETTWNSF---IRILQLVWHTTVWYFSISNVKLQGQL----DFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp HHGGGGCTTCCEEEEEEEEEEHHHH---HHHHHHHHTSSCSEEEEEEEEEESCC----CCCCCCCCSCCCCEEEEEEEEE
T ss_pred hhhhccccchhhccccccccCHHHH---HHHHHHhhhCcccEEEeecccccCcc----ccchhhcccccCceeEeccccc
Confidence 5567888889999888765221111 11000112458888888875321111 1122 6788899999988
Q ss_pred CCCCCCCCCC-C------CCCccEEEEccCCCccccC-CCCCcccEEEEeecCCcc--ccCCCCCCCccEEEEecCCccc
Q 001281 893 CPKFSGKLPE-L------LPSLEILVISKCADLVVPF-SSFPMLCRLEIEECKGIT--CSTPIDCKLIESMTISNSSLQI 962 (1108)
Q Consensus 893 c~~l~~~~p~-~------l~~L~~L~l~~~~~l~~~~-~~l~~L~~L~l~~c~~l~--~~~~~~l~~L~~L~l~~n~~~~ 962 (1108)
+ .+ .+|. . -.+|+.|++++|......+ ..+++|++|++++|.... ...+..+++|+.|++++|.+..
T Consensus 286 n-~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 362 (520)
T 2z7x_B 286 D-VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362 (520)
T ss_dssp C-CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred c-ce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence 5 34 4552 1 1569999999998766554 678999999999998544 3456789999999999998875
Q ss_pred ccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc---cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEe
Q 001281 963 YGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL---KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSI 1039 (1108)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l 1039 (1108)
+... |..+..+++|++|++++|.....++ ...+++|++|++++|.. ....|..+. ++|++|++
T Consensus 363 l~~~------~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l------~~~~~~~l~--~~L~~L~L 428 (520)
T 2z7x_B 363 LSKI------AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL------TDTIFRCLP--PRIKVLDL 428 (520)
T ss_dssp HHHH------HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC------CGGGGGSCC--TTCCEEEC
T ss_pred cccc------hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC------Ccchhhhhc--ccCCEEEC
Confidence 4221 1223478999999999976554365 46778999999999985 344555443 79999999
Q ss_pred eccCccccccccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCcccccc
Q 001281 1040 EENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKKQ 1100 (1108)
Q Consensus 1040 ~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~~ 1100 (1108)
+ .+.++.+|..+..+++|++|++++| .++.+|...+..+++|++|++++|+ +.+-|.
T Consensus 429 s--~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~-~~c~c~ 485 (520)
T 2z7x_B 429 H--SNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP-WDCSCP 485 (520)
T ss_dssp C--SSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-BCCCHH
T ss_pred C--CCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC-CcccCC
Confidence 8 6789999998778999999999986 7899998668899999999999986 555443
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.7e-30 Score=314.13 Aligned_cols=291 Identities=15% Similarity=0.143 Sum_probs=167.1
Q ss_pred CCCCCeEEEeecCCCCCcc--ccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccCc
Q 001281 776 HTNLKKLAITSYSGENFPM--WIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNT 853 (1108)
Q Consensus 776 ~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 853 (1108)
+++|+.|++++|....+|. .+. .+++|+.|++++|.+.+.+|.++.+++|++|++++|. +..+|..+ ..
T Consensus 304 l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l------~~ 374 (636)
T 4eco_A 304 GEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANF------CG 374 (636)
T ss_dssp GGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTS------EE
T ss_pred CCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhh------hh
Confidence 3566666666666666666 555 3467777777777666556666667777777777665 33444332 33
Q ss_pred CCc-cceEecccCCcccccccccCCccc--cCCcccEEeecCCCCCCCCCCCCCC----------CccEEEEccCCCccc
Q 001281 854 FKT-LETLRFENLPEWECWDTKENGLLA--GFSSLRELSILKCPKFSGKLPELLP----------SLEILVISKCADLVV 920 (1108)
Q Consensus 854 ~~~-L~~L~l~~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~p~~l~----------~L~~L~l~~~~~l~~ 920 (1108)
+++ |+.|++.+.. +..++ ..+. .+++|+.|++++| .+++.+|..++ +|+.|++++|.....
T Consensus 375 l~~~L~~L~Ls~N~-l~~lp----~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l 448 (636)
T 4eco_A 375 FTEQVENLSFAHNK-LKYIP----NIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448 (636)
T ss_dssp ECTTCCEEECCSSC-CSSCC----SCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred hcccCcEEEccCCc-Ccccc----hhhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence 555 6666666543 12221 1122 2447777777774 55555554333 667777777665432
Q ss_pred c---CCCCCcccEEEEeecCCcccc--CCC-------CCCCccEEEEecCCcccccccCcccCCCCCCC--CCCCCcEEE
Q 001281 921 P---FSSFPMLCRLEIEECKGITCS--TPI-------DCKLIESMTISNSSLQIYGCEGMIFNDPPAMD--SKSLPTSVT 986 (1108)
Q Consensus 921 ~---~~~l~~L~~L~l~~c~~l~~~--~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~--~~~~L~~L~ 986 (1108)
+ +..+++|++|++++|.....+ .+. .+++|+.|++++|.+..+ |..+. .+++|+.|+
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l---------p~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL---------SDDFRATTLPYLVGID 519 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC---------CGGGSTTTCTTCCEEE
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc---------ChhhhhccCCCcCEEE
Confidence 2 123567777777776633221 111 122777777777766532 22222 677777777
Q ss_pred EcccCCCcccc--cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceEec
Q 001281 987 ISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKI 1064 (1108)
Q Consensus 987 l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l 1064 (1108)
+++|..- .+| +..+++|++|++++|..+..-.-...+|..+..+++|++|+++ .|.++.+|..+. ++|+.|+|
T Consensus 520 Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls--~N~l~~ip~~~~--~~L~~L~L 594 (636)
T 4eco_A 520 LSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG--SNDIRKVNEKIT--PNISVLDI 594 (636)
T ss_dssp CCSSCCS-SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC--SSCCCBCCSCCC--TTCCEEEC
T ss_pred CCCCCCC-CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC--CCcCCccCHhHh--CcCCEEEC
Confidence 7775433 344 4567777888775543211111145677777778888888887 556677877654 78888888
Q ss_pred ccccCCCCCcccC--------CCCCCCccEEeeecCcCcc
Q 001281 1065 ENSRALKSLPQEV--------MGNNAQLEKLFIKYCDNIH 1096 (1108)
Q Consensus 1065 ~~c~~l~~lp~~~--------l~~l~~L~~L~l~~c~~L~ 1096 (1108)
++|+ +.+++... ...+...+..++.+|+.|+
T Consensus 595 s~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 595 KDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred cCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 7753 44443211 1122334555777787764
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.4e-29 Score=309.47 Aligned_cols=294 Identities=12% Similarity=0.102 Sum_probs=187.6
Q ss_pred CCCCCCCCCeEEEeecCCCCCcc--ccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCc
Q 001281 772 MLQPHTNLKKLAITSYSGENFPM--WIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGED 849 (1108)
Q Consensus 772 ~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 849 (1108)
.+..+++|+.|++++|....+|. .+. .+++|+.|+|++|.+. .+|.++.+++|+.|++++|... .+|..+
T Consensus 543 ~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l---- 614 (876)
T 4ecn_A 543 DEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDF---- 614 (876)
T ss_dssp CTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTS----
T ss_pred cccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHH----
Confidence 34455677777777777667776 555 3567777777777665 6667777777777777776633 444332
Q ss_pred ccCcCCc-cceEecccCCcccccccccCCccccC--CcccEEeecCCCCCCCCCCC--------CCCCccEEEEccCCCc
Q 001281 850 ILNTFKT-LETLRFENLPEWECWDTKENGLLAGF--SSLRELSILKCPKFSGKLPE--------LLPSLEILVISKCADL 918 (1108)
Q Consensus 850 ~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~p~--------~l~~L~~L~l~~~~~l 918 (1108)
..+++ |+.|.+.++. +..++ ..+..+ ++|+.|++++| .+.+.+|. ..++|+.|++++|...
T Consensus 615 --~~l~~~L~~L~Ls~N~-L~~lp----~~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 615 --CAFTDQVEGLGFSHNK-LKYIP----NIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp --CEECTTCCEEECCSSC-CCSCC----SCCCTTCSSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC
T ss_pred --hhccccCCEEECcCCC-CCcCc----hhhhccccCCCCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCCcCC
Confidence 34566 7777776643 22221 122223 44888888775 45444442 1247888888887765
Q ss_pred ccc---CCCCCcccEEEEeecCCcccc--CC-------CCCCCccEEEEecCCcccccccCcccCCCCCCC--CCCCCcE
Q 001281 919 VVP---FSSFPMLCRLEIEECKGITCS--TP-------IDCKLIESMTISNSSLQIYGCEGMIFNDPPAMD--SKSLPTS 984 (1108)
Q Consensus 919 ~~~---~~~l~~L~~L~l~~c~~l~~~--~~-------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~--~~~~L~~ 984 (1108)
..+ +..+++|+.|++++|.....+ .+ .++++|+.|++++|.+..+ |..+. .+++|+.
T Consensus 687 ~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l---------p~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL---------SDDFRATTLPYLSN 757 (876)
T ss_dssp SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC---------CGGGSTTTCTTCCE
T ss_pred ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc---------hHHhhhccCCCcCE
Confidence 322 125678888888887633221 11 1234899999998877633 22333 7889999
Q ss_pred EEEcccCCCcccc--cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceE
Q 001281 985 VTISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYL 1062 (1108)
Q Consensus 985 L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L 1062 (1108)
|++++|. +..+| +..+++|+.|+|++|+.+....-...+|..+.++++|++|+|+ .|.++.+|..+. ++|+.|
T Consensus 758 L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls--~N~L~~Ip~~l~--~~L~~L 832 (876)
T 4ecn_A 758 MDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG--SNDIRKVDEKLT--PQLYIL 832 (876)
T ss_dssp EECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC--SSCCCBCCSCCC--SSSCEE
T ss_pred EEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC--CCCCCccCHhhc--CCCCEE
Confidence 9998864 34455 5678999999998754221111156788899999999999998 567799998754 799999
Q ss_pred ecccccCCCCCcccCC--------CCCCCccEEeeecCcCcc
Q 001281 1063 KIENSRALKSLPQEVM--------GNNAQLEKLFIKYCDNIH 1096 (1108)
Q Consensus 1063 ~l~~c~~l~~lp~~~l--------~~l~~L~~L~l~~c~~L~ 1096 (1108)
+|++|+ +..++...+ ..+...+..+|.+|+.|.
T Consensus 833 dLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 833 DIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp ECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred ECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 999874 555542222 122233444678888775
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.2e-28 Score=297.03 Aligned_cols=456 Identities=18% Similarity=0.211 Sum_probs=328.9
Q ss_pred ccEEEecCccccccCcchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCC
Q 001281 597 LRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGA 675 (1108)
Q Consensus 597 Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 675 (1108)
..+.+.+++.++.+|..+. ++|++|++++|.++.+ |..+.++++|++|++++|......|..++++++|++|++++|
T Consensus 7 ~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp TSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3456888999999998775 7999999999999977 568999999999999998655555578999999999999999
Q ss_pred CCCCcCCcc-CCCCCCCCccCceeeCC---CCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEE
Q 001281 676 NSLEGMPYG-MEKLKHLQTLSNFIVGK---DTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQ 751 (1108)
Q Consensus 676 ~~~~~lp~~-i~~L~~L~~L~~~~~~~---~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 751 (1108)
. +..+|.. ++++++|++|+...... ..+..+..+++|+.|. +.+.. ......+..+..+++|+.|+++
T Consensus 85 ~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~----L~~n~---~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 85 H-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR----IGNVE---TFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp C-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE----EEESS---SCCEECTTTTTTCCEEEEEEEE
T ss_pred c-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE----CCCCc---cccccCHhhhhcccccCeeecc
Confidence 8 6667665 99999999985332221 2234566677777664 22211 1222333467888999999999
Q ss_pred ecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCC----CCCCCCCCCc
Q 001281 752 WGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTS----LPSLSMLGSL 827 (1108)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~----l~~l~~l~~L 827 (1108)
+|...... ...+..+++|++|++.++....+|.++.. .+++|+.|++++|.+.+. .+....+++|
T Consensus 157 ~n~l~~~~----------~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 157 ALSLRNYQ----------SQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp ETTCCEEC----------TTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred CCcccccC----------hhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcc
Confidence 88754322 23467788999999999988888877643 368999999999988663 2334568999
Q ss_pred cEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcc--cccccccCCccccCCcccEEeecCCCCCCC-----CC
Q 001281 828 KQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEW--ECWDTKENGLLAGFSSLRELSILKCPKFSG-----KL 900 (1108)
Q Consensus 828 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----~~ 900 (1108)
+.|++.+|......+..+. .....+++|+.+.+.++.-. ..+.......+..+++|+.|.+.++. +.. .+
T Consensus 226 ~~L~l~~n~l~~~~~~~l~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l 302 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELL--KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDL 302 (549)
T ss_dssp CEEEEESCEEEHHHHHHHH--GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCC
T ss_pred cceeccccccchhHHHHHH--HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc-cchhhhcccc
Confidence 9999998753222111111 12346788999998876421 11111112234678899999998862 221 11
Q ss_pred C---CCCCCccEEEEccCCCccccC---CCCCcccEEEEeecCCccc-----cCCCCCCCccEEEEecCCcccccccCcc
Q 001281 901 P---ELLPSLEILVISKCADLVVPF---SSFPMLCRLEIEECKGITC-----STPIDCKLIESMTISNSSLQIYGCEGMI 969 (1108)
Q Consensus 901 p---~~l~~L~~L~l~~~~~l~~~~---~~l~~L~~L~l~~c~~l~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 969 (1108)
+ ...++|+.|++++|.....+. ..+++|++|++++|..... ..+..+++|+.|++++|.+..+.-.+
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-- 380 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG-- 380 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH--
T ss_pred hhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch--
Confidence 1 134689999999987543221 2589999999999985432 23677899999999999876542100
Q ss_pred cCCCCCCCCCCCCcEEEEcccCCCcccc--cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCcccc
Q 001281 970 FNDPPAMDSKSLPTSVTISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLV 1047 (1108)
Q Consensus 970 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~ 1047 (1108)
..+..+++|++|++++| .++.+| ...+++|++|++++|. +..+|..+. ++|++|+++ .+.++
T Consensus 381 ----~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-------l~~l~~~~~--~~L~~L~Ls--~N~l~ 444 (549)
T 2z81_A 381 ----EILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-------IRVVKTCIP--QTLEVLDVS--NNNLD 444 (549)
T ss_dssp ----HHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-------CSCCCTTSC--TTCSEEECC--SSCCS
T ss_pred ----hhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-------cccccchhc--CCceEEECC--CCChh
Confidence 11347899999999997 555666 4678899999999998 566665443 689999998 66788
Q ss_pred ccccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCccccccc
Q 001281 1048 SFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKKQA 1101 (1108)
Q Consensus 1048 ~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~~~ 1101 (1108)
.++ ..+++|++|++++| +++.+|. ...+++|++|++++| +++.++..
T Consensus 445 ~~~---~~l~~L~~L~Ls~N-~l~~ip~--~~~l~~L~~L~Ls~N-~l~~~~~~ 491 (549)
T 2z81_A 445 SFS---LFLPRLQELYISRN-KLKTLPD--ASLFPVLLVMKISRN-QLKSVPDG 491 (549)
T ss_dssp CCC---CCCTTCCEEECCSS-CCSSCCC--GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred hhc---ccCChhcEEECCCC-ccCcCCC--cccCccCCEEecCCC-ccCCcCHH
Confidence 776 35899999999986 7899997 346899999999998 56666543
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.9e-29 Score=305.00 Aligned_cols=373 Identities=14% Similarity=0.153 Sum_probs=194.1
Q ss_pred ccccccCcchhcCCCCcEEEeeCccccc------------------cchhhh--cCccCcEeeecCCcCCcccchhccCC
Q 001281 605 YYVTQLPNSIKELKLLRYLNVAGTQIRS------------------LPESTS--SLMHLRVLILRDCSRLTRLPSKMWNL 664 (1108)
Q Consensus 605 ~~i~~lp~~i~~l~~L~~L~Ls~~~i~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~lp~~i~~L 664 (1108)
|.++.+|..++++++|++|+|++|.++. +|..++ ++++|++|++++|.....+|..++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3454566666666666666666666665 666666 66666666666665556666666666
Q ss_pred CCccEEeecCCCCCC--cCCccCCCC------CCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhh
Q 001281 665 INLRHLDIEGANSLE--GMPYGMEKL------KHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGE 736 (1108)
Q Consensus 665 ~~L~~L~l~~~~~~~--~lp~~i~~L------~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~ 736 (1108)
++|++|++++|..+. .+|..++++ ++|+.|+.. .+.+. ..+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~------------------------------~n~l~-~ip 321 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG------------------------------YNNLK-TFP 321 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC------------------------------SSCCS-SCC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC------------------------------CCcCC-ccC
Confidence 666666666664222 355544443 333333210 01111 111
Q ss_pred h--ccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCc-ceEEEEeCCC
Q 001281 737 A--MLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSK-MEVLELQNCQ 813 (1108)
Q Consensus 737 ~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~-L~~L~L~~~~ 813 (1108)
. .+..+++|+.|+++.|...+..+ .+..+++|+.|++++|....+|.++. .+++ |+.|++++|.
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-----------~~~~l~~L~~L~L~~N~l~~lp~~l~--~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-----------AFGSEIKLASLNLAYNQITEIPANFC--GFTEQVENLSFAHNK 388 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-----------CCEEEEEESEEECCSSEEEECCTTSE--EECTTCCEEECCSSC
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-----------hhCCCCCCCEEECCCCccccccHhhh--hhcccCcEEEccCCc
Confidence 1 23344444444444443210000 12333444444444444444444443 2234 5555555554
Q ss_pred CCCCCC-CCCCC--CCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEee
Q 001281 814 NCTSLP-SLSML--GSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSI 890 (1108)
Q Consensus 814 ~~~~l~-~l~~l--~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 890 (1108)
+. .+| .+..+ ++|+.|++++|.....+|..+... ......+++|++|++
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~---------------------------~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL---------------------------DPTPFKGINVSSINL 440 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT---------------------------CSSCCCCCCEEEEEC
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc---------------------------ccccccCCCCCEEEC
Confidence 43 233 22222 245555554444222222111100 000013345555555
Q ss_pred cCCCCCCCCCCC----CCCCccEEEEccCCCccccCC----------CCCcccEEEEeecCCcccc-CCC--CCCCccEE
Q 001281 891 LKCPKFSGKLPE----LLPSLEILVISKCADLVVPFS----------SFPMLCRLEIEECKGITCS-TPI--DCKLIESM 953 (1108)
Q Consensus 891 ~~c~~l~~~~p~----~l~~L~~L~l~~~~~l~~~~~----------~l~~L~~L~l~~c~~l~~~-~~~--~l~~L~~L 953 (1108)
++| .++ .+|. .+++|+.|++++|.....+.. .+++|+.|++++|.....+ .+. .+++|+.|
T Consensus 441 s~N-~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 441 SNN-QIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CSS-CCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEE
T ss_pred cCC-ccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEE
Confidence 553 343 3443 245555555555554322211 1237788888777644322 222 77888888
Q ss_pred EEecCCcccccccCcccCCCCCCCCCCCCcEEEEcc------cCCCcccc--cCCCCCccEEEEeccCCccccccccCCc
Q 001281 954 TISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISN------VLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQFDKPE 1025 (1108)
Q Consensus 954 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p 1025 (1108)
++++|.+..+ |..+..+++|+.|++++ +.....+| +..+++|++|+|++|. +..+|
T Consensus 519 ~Ls~N~l~~i---------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-------l~~ip 582 (636)
T 4eco_A 519 DLSYNSFSKF---------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-------IRKVN 582 (636)
T ss_dssp ECCSSCCSSC---------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-------CCBCC
T ss_pred ECCCCCCCCc---------ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-------CCccC
Confidence 8888776642 33445788888888854 33333444 4678899999999998 66778
Q ss_pred ccCCCCCCCcEeEeeccCccccccccc---------cccCCCcceEecccccCCC
Q 001281 1026 QGLHVLSSPEDVSIEENCMSLVSFSEV---------IFLMNNLRYLKIENSRALK 1071 (1108)
Q Consensus 1026 ~~l~~l~~L~~L~l~~~c~~l~~lp~~---------~~~l~~L~~L~l~~c~~l~ 1071 (1108)
..+. ++|++|+++ .|.+..++.. ...+...+..++.+|+.+.
T Consensus 583 ~~~~--~~L~~L~Ls--~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 583 EKIT--PNISVLDIK--DNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp SCCC--TTCCEEECC--SCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred HhHh--CcCCEEECc--CCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 7665 799999998 5555555421 1124445667788887664
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3e-28 Score=293.31 Aligned_cols=436 Identities=16% Similarity=0.102 Sum_probs=250.8
Q ss_pred CcccEEEecCccccccC-cchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 595 KKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
++|++|+|++|.++.+| ..|.++++|++|+|++|.|+.+ |..++++++|++|++++|. +..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence 45666666666666553 4566666666666666666655 4456666666666666643 4456554 5666666666
Q ss_pred cCCCCCCcCC--ccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEE
Q 001281 673 EGANSLEGMP--YGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSL 750 (1108)
Q Consensus 673 ~~~~~~~~lp--~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 750 (1108)
++|. +..+| ..++++++|++|+... +.+.......+..+ +|+.|++
T Consensus 129 s~N~-l~~l~~p~~~~~l~~L~~L~L~~------------------------------n~l~~~~~~~l~~L-~L~~L~L 176 (562)
T 3a79_B 129 SFND-FDVLPVCKEFGNLTKLTFLGLSA------------------------------AKFRQLDLLPVAHL-HLSCILL 176 (562)
T ss_dssp CSSC-CSBCCCCGGGGGCTTCCEEEEEC------------------------------SBCCTTTTGGGTTS-CEEEEEE
T ss_pred CCCC-ccccCchHhhcccCcccEEecCC------------------------------CccccCchhhhhhc-eeeEEEe
Confidence 6665 44332 3455555555553111 00000001112222 3377777
Q ss_pred EecCC--CCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCC-CccccccCCcCcceEEEEeCCCC-----CCCCCCCC
Q 001281 751 QWGSQ--FDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGEN-FPMWIGDLSFSKMEVLELQNCQN-----CTSLPSLS 822 (1108)
Q Consensus 751 ~~~~~--~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~-----~~~l~~l~ 822 (1108)
++|.. ....+.. +..+.. ..+ .+++.++.... ++.... ..+++|+.|++++|.. .+.++.+.
T Consensus 177 ~~n~l~~~~~~~~~-------l~~l~~-~~l-~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~l~~~~~~l~ 246 (562)
T 3a79_B 177 DLVSYHIKGGETES-------LQIPNT-TVL-HLVFHPNSLFSVQVNMSV-NALGHLQLSNIKLNDENCQRLMTFLSELT 246 (562)
T ss_dssp EESSCCCCSSSCCE-------EEECCE-EEE-EEEECSSSCCCCCCEEEE-SSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred ecccccccccCccc-------ccccCc-ceE-EEEecCccchhhhhhhcc-cccceEEEecccccccccchHHHHHHHHh
Confidence 76654 2111110 011100 011 23333333222 121111 1356677777776631 11122345
Q ss_pred CCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCccccccccc-CCccccCCcccEEeecCCCCCCCCCC
Q 001281 823 MLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKE-NGLLAGFSSLRELSILKCPKFSGKLP 901 (1108)
Q Consensus 823 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~p 901 (1108)
.+++|+.|++.++.... ..+.+.......++|+.|++.++.--..++... ......++.|+.+++..+ .+ .+|
T Consensus 247 ~l~~L~~L~L~~~~l~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~-~~--~~p 320 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTW---KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ-VF--LFS 320 (562)
T ss_dssp SCSSCEEEEEEEEEECH---HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC-CC--SSC
T ss_pred ccCcceEEEecCCcCcH---HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc-ee--ecC
Confidence 56666777666543110 000000001123477777777643111111000 000123333333333332 22 334
Q ss_pred C-------CCCCccEEEEccCCCccccC-CCCCcccEEEEeecCCcc--ccCCCCCCCccEEEEecCCcccccccCcccC
Q 001281 902 E-------LLPSLEILVISKCADLVVPF-SSFPMLCRLEIEECKGIT--CSTPIDCKLIESMTISNSSLQIYGCEGMIFN 971 (1108)
Q Consensus 902 ~-------~l~~L~~L~l~~~~~l~~~~-~~l~~L~~L~l~~c~~l~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 971 (1108)
. .-.+|+.|++++|......+ ..+++|++|++++|.... ...+..+++|+.|++++|.+..+...
T Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----- 395 (562)
T 3a79_B 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV----- 395 (562)
T ss_dssp HHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH-----
T ss_pred hhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc-----
Confidence 1 11468999999998765544 678999999999997444 34567899999999999887754321
Q ss_pred CCCCCCCCCCCcEEEEcccCCCcccc---cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccc
Q 001281 972 DPPAMDSKSLPTSVTISNVLEFGKFL---KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVS 1048 (1108)
Q Consensus 972 ~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~ 1048 (1108)
+..+..+++|+.|+++++.....++ ...+++|++|++++|.. ....|..+. ++|++|+++ .+.++.
T Consensus 396 -~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l------~~~~~~~l~--~~L~~L~L~--~N~l~~ 464 (562)
T 3a79_B 396 -ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML------TGSVFRCLP--PKVKVLDLH--NNRIMS 464 (562)
T ss_dssp -HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC------CGGGGSSCC--TTCSEEECC--SSCCCC
T ss_pred -hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC------Ccchhhhhc--CcCCEEECC--CCcCcc
Confidence 1234588999999999976544354 46789999999999984 333444333 699999998 678999
Q ss_pred cccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCccccc
Q 001281 1049 FSEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKK 1099 (1108)
Q Consensus 1049 lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~ 1099 (1108)
+|..++.+++|++|++++| .++.+|...+..+++|+.|++++|| +.+-|
T Consensus 465 ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~-~~c~c 513 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP-WDCTC 513 (562)
T ss_dssp CCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC-BCCCH
T ss_pred cChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC-cCCCc
Confidence 9998888999999999885 7999998668999999999999986 44433
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.9e-28 Score=301.45 Aligned_cols=425 Identities=13% Similarity=0.093 Sum_probs=296.5
Q ss_pred CcccEEEecCcccc-ccCcchhcCCCCcEEEe-eCcccccc-chh-----------------------------------
Q 001281 595 KKLRVLSLEGYYVT-QLPNSIKELKLLRYLNV-AGTQIRSL-PES----------------------------------- 636 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L-s~~~i~~l-p~~----------------------------------- 636 (1108)
..+..|+|+++.+. .+|.+|++|++|++|+| ++|.+... |-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999997 78999999999999999 77755311 100
Q ss_pred ----------------hhcCccCcEeeecC-CcCCcccchhccCCCCccEEeecCCCCCCc--CCccCCCCCCCCccCce
Q 001281 637 ----------------TSSLMHLRVLILRD-CSRLTRLPSKMWNLINLRHLDIEGANSLEG--MPYGMEKLKHLQTLSNF 697 (1108)
Q Consensus 637 ----------------i~~L~~L~~L~l~~-~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~~~ 697 (1108)
......++.+.+.. ++.+..+|..+++|++|++|+|++|. +.. +|..+..+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~--------- 472 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDA--------- 472 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCT---------
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCccccccccc---------
Confidence 01112233333332 12344478888888888888888876 332 22111000
Q ss_pred eeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccC--CCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCC
Q 001281 698 IVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLC--EKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQP 775 (1108)
Q Consensus 698 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 775 (1108)
..+......+..+. ++++|+.|+|+.|......+.. +..
T Consensus 473 -----------------------------s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----------l~~ 513 (876)
T 4ecn_A 473 -----------------------------NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF----------LYD 513 (876)
T ss_dssp -----------------------------TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG----------GGG
T ss_pred -----------------------------ccccccccCChhhhhccCCCCCEEECcCCCCCccChHH----------HhC
Confidence 00122234445555 7778888888877654443332 556
Q ss_pred CCCCCeEEEeecC-CCC--CccccccC-----CcCcceEEEEeCCCCCCCCCC---CCCCCCccEEEecCCCCceeeCcc
Q 001281 776 HTNLKKLAITSYS-GEN--FPMWIGDL-----SFSKMEVLELQNCQNCTSLPS---LSMLGSLKQLTIKGMTRLKSIGSE 844 (1108)
Q Consensus 776 ~~~L~~L~l~~~~-~~~--~p~~~~~~-----~l~~L~~L~L~~~~~~~~l~~---l~~l~~L~~L~L~~~~~l~~i~~~ 844 (1108)
+++|+.|++++|. ... +|..+... .+++|+.|+|++|.+. .+|. ++.+++|+.|++++|... .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 7788888888886 553 67655421 3469999999999987 6665 899999999999998744 555 2
Q ss_pred cccCcccCcCCccceEecccCCcccccccccCCccccCCc-ccEEeecCCCCCCCCCCCCC-----CCccEEEEccCCCc
Q 001281 845 FYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSS-LRELSILKCPKFSGKLPELL-----PSLEILVISKCADL 918 (1108)
Q Consensus 845 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~p~~l-----~~L~~L~l~~~~~l 918 (1108)
+..+++|+.|.+.++.- .. .+..+..+++ |+.|++++| .++ .+|..+ ++|+.|++++|...
T Consensus 591 ------~~~L~~L~~L~Ls~N~l-~~----lp~~l~~l~~~L~~L~Ls~N-~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 591 ------FGTNVKLTDLKLDYNQI-EE----IPEDFCAFTDQVEGLGFSHN-KLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp ------CCTTSEESEEECCSSCC-SC----CCTTSCEECTTCCEEECCSS-CCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred ------hcCCCcceEEECcCCcc-cc----chHHHhhccccCCEEECcCC-CCC-cCchhhhccccCCCCEEECcCCcCC
Confidence 35689999999988542 22 2334677888 999999996 575 777643 34999999999764
Q ss_pred ccc------CC--CCCcccEEEEeecCCcccc--CCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEc
Q 001281 919 VVP------FS--SFPMLCRLEIEECKGITCS--TPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTIS 988 (1108)
Q Consensus 919 ~~~------~~--~l~~L~~L~l~~c~~l~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 988 (1108)
... +. .+++|+.|++++|.....+ .+..+++|+.|++++|.+..+........ .....++++|+.|+++
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~-~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK-DGNYKNTYLLTTIDLR 736 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT-TSCCTTGGGCCEEECC
T ss_pred CccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc-cccccccCCccEEECC
Confidence 311 11 3458999999999855332 23478999999999998874432211110 0112345599999999
Q ss_pred ccCCCcccc--cC--CCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeecc------CccccccccccccCCC
Q 001281 989 NVLEFGKFL--KQ--GFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEEN------CMSLVSFSEVIFLMNN 1058 (1108)
Q Consensus 989 ~c~~l~~~~--~~--~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~------c~~l~~lp~~~~~l~~ 1058 (1108)
+| .++.+| .. .+++|+.|+|++|. +..+|..+.++++|+.|+|+ + |.-...+|..+..+++
T Consensus 737 ~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-------L~~lp~~l~~L~~L~~L~Ls-~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 737 FN-KLTSLSDDFRATTLPYLSNMDVSYNC-------FSSFPTQPLNSSQLKAFGIR-HQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp SS-CCCCCCGGGSTTTCTTCCEEECCSSC-------CSSCCCGGGGCTTCCEEECC-CCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CC-CCccchHHhhhccCCCcCEEEeCCCC-------CCccchhhhcCCCCCEEECC-CCCCcccccccccChHHHhcCCC
Confidence 97 455666 33 78999999999998 66789999999999999997 4 3335678888888999
Q ss_pred cceEecccccCCCCCcccCCCCCCCccEEeeecCcCccccc
Q 001281 1059 LRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKK 1099 (1108)
Q Consensus 1059 L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~ 1099 (1108)
|+.|+|++| .+..+|.. + .++|+.|+|++|+ +..+.
T Consensus 808 L~~L~Ls~N-~L~~Ip~~-l--~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 808 LIQLQIGSN-DIRKVDEK-L--TPQLYILDIADNP-NISID 843 (876)
T ss_dssp CCEEECCSS-CCCBCCSC-C--CSSSCEEECCSCT-TCEEE
T ss_pred CCEEECCCC-CCCccCHh-h--cCCCCEEECCCCC-CCccC
Confidence 999999997 57999984 4 3799999999997 44433
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=296.90 Aligned_cols=456 Identities=16% Similarity=0.169 Sum_probs=279.3
Q ss_pred CceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccc-hhhhcCc
Q 001281 564 HLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLP-ESTSSLM 641 (1108)
Q Consensus 564 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~ 641 (1108)
+++.|.+.++.. ..+.+..|.++++|++|+|++|.++.+ |..|+++++|++|++++|.++.+| ..+++++
T Consensus 29 ~l~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 29 STKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCCEEECCSCCC--------CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred cccEEEccCCcc--------CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 456665554432 223344566777777777777777766 455677777777777777777664 5677777
Q ss_pred cCcEeeecCCcCCcccch-hccCCCCccEEeecCCCCCCc--CCccCCCCCCCCccCceee--CCCCCCCcccccccccc
Q 001281 642 HLRVLILRDCSRLTRLPS-KMWNLINLRHLDIEGANSLEG--MPYGMEKLKHLQTLSNFIV--GKDTGSGLKDLKNLKFL 716 (1108)
Q Consensus 642 ~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~~~~~--~~~~~~~l~~l~~L~~L 716 (1108)
+|++|++++|. +..+|. .++++++|++|++++|. +.. +|..++++++|++|+.... .......+..+.+|..+
T Consensus 101 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 101 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (570)
T ss_dssp TCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTC
T ss_pred ccccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchh
Confidence 77777777754 444443 46777777777777776 333 5666777777777642111 11111122233333111
Q ss_pred CceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCcccc
Q 001281 717 HGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWI 796 (1108)
Q Consensus 717 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~ 796 (1108)
...+.+. .+.+....+..+... +|+.|++++|.... ..+|.++
T Consensus 179 ~~~L~l~----~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~--------------------------------~~~~~~~ 221 (570)
T 2z63_A 179 NLSLDLS----LNPMNFIQPGAFKEI-RLHKLTLRNNFDSL--------------------------------NVMKTCI 221 (570)
T ss_dssp CCEEECT----TCCCCEECTTTTTTC-EEEEEEEESCCSCT--------------------------------THHHHHH
T ss_pred hhhcccC----CCCceecCHHHhccC-cceeEecccccccc--------------------------------cchhhhh
Confidence 1011111 111111112222222 45555554432110 1112222
Q ss_pred ccCCcCcceEEEEeCCCC--C---CCCC--CCCCCC--CccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCc
Q 001281 797 GDLSFSKMEVLELQNCQN--C---TSLP--SLSMLG--SLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPE 867 (1108)
Q Consensus 797 ~~~~l~~L~~L~L~~~~~--~---~~l~--~l~~l~--~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~ 867 (1108)
. .+++++.+.+..... . ..++ .+..++ .++.+++.++..+..... ..+..+++|+.|.+.++.
T Consensus 222 ~--~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-----~~~~~l~~L~~L~l~~~~- 293 (570)
T 2z63_A 222 Q--GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-----DLFNCLTNVSSFSLVSVT- 293 (570)
T ss_dssp H--TTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-----TTTGGGTTCSEEEEESCE-
T ss_pred c--CccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch-----hhhcCcCcccEEEecCcc-
Confidence 2 122333222221110 0 0111 122232 356666666632222111 123468899999998753
Q ss_pred ccccccccCCccccCCcccEEeecCCCCCCCCCCC-CCCCccEEEEccCCCccc-cCCCCCcccEEEEeecCCccc----
Q 001281 868 WECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE-LLPSLEILVISKCADLVV-PFSSFPMLCRLEIEECKGITC---- 941 (1108)
Q Consensus 868 l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-~l~~L~~L~l~~~~~l~~-~~~~l~~L~~L~l~~c~~l~~---- 941 (1108)
+..+ +..+..+ +|++|++.+| .+. .+|. .+++|+.|++++|..... ....+++|++|++++|.....
T Consensus 294 l~~l----~~~~~~~-~L~~L~l~~n-~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 366 (570)
T 2z63_A 294 IERV----KDFSYNF-GWQHLELVNC-KFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366 (570)
T ss_dssp ECSC----CBCCSCC-CCSEEEEESC-BCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEE
T ss_pred chhh----hhhhccC-CccEEeeccC-ccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccc
Confidence 2222 2234556 9999999997 554 5554 689999999999886532 235689999999999974432
Q ss_pred cCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc---cCCCCCccEEEEeccCCcccc
Q 001281 942 STPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL---KQGFQQVETLRIGNSEQIKSW 1018 (1108)
Q Consensus 942 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~l~~~~~l~~~ 1018 (1108)
..+..+++|+.|++++|.+..+.. .+..+++|+.|++++|......+ +..+++|++|++++|..
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---- 433 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSS---------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---- 433 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEE---------EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC----
T ss_pred ccccccCccCEEECCCCccccccc---------cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc----
Confidence 345678999999999887765421 14478999999999875433222 57789999999999985
Q ss_pred ccccCCcccCCCCCCCcEeEeeccCcccc--ccccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCcc
Q 001281 1019 LQFDKPEQGLHVLSSPEDVSIEENCMSLV--SFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIH 1096 (1108)
Q Consensus 1019 ~~~~~~p~~l~~l~~L~~L~l~~~c~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~ 1096 (1108)
....|..+.++++|++|+++ + +.++ .+|..+..+++|++|++++| .++.++...+..+++|++|++++| +++
T Consensus 434 --~~~~~~~~~~l~~L~~L~l~-~-n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~ 507 (570)
T 2z63_A 434 --RVAFNGIFNGLSSLEVLKMA-G-NSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLK 507 (570)
T ss_dssp --EECCTTTTTTCTTCCEEECT-T-CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred --cccchhhhhcCCcCcEEECc-C-CcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCC
Confidence 55578889999999999998 4 4554 68888888999999999997 677775448899999999999998 466
Q ss_pred cccc
Q 001281 1097 RKKQ 1100 (1108)
Q Consensus 1097 ~~~~ 1100 (1108)
.++.
T Consensus 508 ~~~~ 511 (570)
T 2z63_A 508 SVPD 511 (570)
T ss_dssp CCCT
T ss_pred CCCH
Confidence 6654
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.8e-27 Score=289.90 Aligned_cols=507 Identities=15% Similarity=0.107 Sum_probs=278.5
Q ss_pred cccceeEEEeecCCCCcccccccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccC-cch
Q 001281 536 RFERVRHSSYTRGHFDSKIRFESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLP-NSI 614 (1108)
Q Consensus 536 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i 614 (1108)
.|..++++.+..+.+.. .....|..+++|+.|.+.++.. ..+++++|.++++|++|+|++|.++.+| ..|
T Consensus 50 lp~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i--------~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp SCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CCcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcC--------CCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 34455555555544332 1223445555555555544432 2233444555555555555555555554 234
Q ss_pred hcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCc-ccchhccCCCCccEEeecCCCCCCcC-CccCCCCCCC
Q 001281 615 KELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLT-RLPSKMWNLINLRHLDIEGANSLEGM-PYGMEKLKHL 691 (1108)
Q Consensus 615 ~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L 691 (1108)
.++++|++|+|++|.++.+|. .|++|++|++|++++|.... .+|..++.+++|++|++++|. +..+ |..+..+.++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 199 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTC
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhh
Confidence 555555555555555555543 35555555555555543211 234455555555555555554 3332 2233333333
Q ss_pred CccCcee------eCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhh
Q 001281 692 QTLSNFI------VGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAK 765 (1108)
Q Consensus 692 ~~L~~~~------~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 765 (1108)
+.+.... ........+. ...+..+ ... .+. .........+..+..++...+..+........
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l----~l~--~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l---- 267 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFK-EIRLHKL----TLR--NNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL---- 267 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTT-TCEEEEE----EEE--SCC-SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC----
T ss_pred hhhhhhhhcccCcccccCccccc-chhhhhh----hhh--ccc-ccccccchhhcCCccccccccccccccccccc----
Confidence 3221100 0000000000 0000000 000 000 01112222334444454444433321110000
Q ss_pred hhhhhcCCCCCCCCCeEEEeecCCCCC----ccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceee
Q 001281 766 EHTVLDMLQPHTNLKKLAITSYSGENF----PMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSI 841 (1108)
Q Consensus 766 ~~~~l~~l~~~~~L~~L~l~~~~~~~~----p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i 841 (1108)
.......+.....+..+.+..+..... +..+. .+.+++.+.+.++.... ++.+.....|+.|++.+|......
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN--CLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG--GGTTCSEEEEESCEEEE-CGGGGSCCCCSEEEEESCEESSCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhh--hhccccccccccccccc-ccccccchhhhhhhcccccccCcC
Confidence 000011112222333344433322211 11111 24567777777765432 334555677888888776522111
Q ss_pred CcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCC--CCCC---CCCCccEEEEccCC
Q 001281 842 GSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSG--KLPE---LLPSLEILVISKCA 916 (1108)
Q Consensus 842 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~p~---~l~~L~~L~l~~~~ 916 (1108)
...++.|+.+.+.....-.. .....+++|+.|+++++ .+.. ..+. .+.+|+.|++..+.
T Consensus 345 ---------~~~l~~L~~l~l~~n~~~~~------~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 345 ---------TLKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp ---------CCBCTTCCEEEEESCCSCCB------CCCCBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred ---------cccchhhhhcccccccCCCC------cccccccccccchhhcc-ccccccccccchhhhhhhhhhhccccc
Confidence 13466777777765432111 12346788888888875 3321 1221 46788888888776
Q ss_pred Ccc--ccCCCCCcccEEEEeecCCcc---ccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccC
Q 001281 917 DLV--VPFSSFPMLCRLEIEECKGIT---CSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVL 991 (1108)
Q Consensus 917 ~l~--~~~~~l~~L~~L~l~~c~~l~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 991 (1108)
... ..+..+++|+.+++..|.... ...+..+++++.++++.|.+... .+..+..+++|+.|+++++.
T Consensus 409 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~--------~~~~~~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 409 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--------FNGIFNGLSSLEVLKMAGNS 480 (635)
T ss_dssp EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC--------CTTTTTTCTTCCEEECTTCE
T ss_pred cccccccccccccccchhhhhccccccccccccccccccccccccccccccc--------cccccccchhhhhhhhhhcc
Confidence 443 345567889999988776333 23456788899999987776554 23445588999999999987
Q ss_pred CCcccc---cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccc-cccCCCcceEecccc
Q 001281 992 EFGKFL---KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENS 1067 (1108)
Q Consensus 992 ~l~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c 1067 (1108)
....+. +..+++|++|+|++|.. ....|..|.++++|++|+|+ .|+++.++.. +.++++|++|+|+++
T Consensus 481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L------~~l~~~~f~~l~~L~~L~Ls--~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 481 FQENFLPDIFTELRNLTFLDLSQCQL------EQLSPTAFNSLSSLQVLNMS--HNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECT--TSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred cccccCchhhhhccccCEEECCCCcc------CCcChHHHcCCCCCCEEECC--CCcCCCCChhHHhCCCCCCEEECCCC
Confidence 665443 57789999999999984 33357889999999999998 7789998764 557999999999884
Q ss_pred cCCCCCcccCCCCC-CCccEEeeecCcCccccccc
Q 001281 1068 RALKSLPQEVMGNN-AQLEKLFIKYCDNIHRKKQA 1101 (1108)
Q Consensus 1068 ~~l~~lp~~~l~~l-~~L~~L~l~~c~~L~~~~~~ 1101 (1108)
.++.++++.+..+ ++|++|+++++| +.+-|+.
T Consensus 553 -~l~~~~~~~l~~l~~~L~~L~L~~Np-~~C~C~~ 585 (635)
T 4g8a_A 553 -HIMTSKKQELQHFPSSLAFLNLTQND-FACTCEH 585 (635)
T ss_dssp -CCCBCCSSCTTCCCTTCCEEECTTCC-BCCSGGG
T ss_pred -cCCCCCHHHHHhhhCcCCEEEeeCCC-CcccCCc
Confidence 7888887788887 689999999986 6665553
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.3e-28 Score=287.65 Aligned_cols=434 Identities=12% Similarity=0.094 Sum_probs=276.5
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchhhhcCc
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPESTSSLM 641 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~ 641 (1108)
++++.|.+.++.. ..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.|+.+|.. .++
T Consensus 21 ~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYI--------SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSCC--------CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred ccccEEECCCCcc--------cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 6788888876654 234556788899999999999999877 78899999999999999999999887 899
Q ss_pred cCcEeeecCCcCCc-ccchhccCCCCccEEeecCCCCCCcCCccCCCCCCC--CccCceeeCC----CCCCCcccccccc
Q 001281 642 HLRVLILRDCSRLT-RLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHL--QTLSNFIVGK----DTGSGLKDLKNLK 714 (1108)
Q Consensus 642 ~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L--~~L~~~~~~~----~~~~~l~~l~~L~ 714 (1108)
+|++|++++|.... .+|..++++++|++|++++|. +.. ..++.+++| +.|....... ..+..+..+.. +
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~ 166 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-E 166 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-E
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccccc-c
Confidence 99999999976544 467889999999999999987 443 346667777 7665333221 11222333221 1
Q ss_pred ccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCC---
Q 001281 715 FLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGEN--- 791 (1108)
Q Consensus 715 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--- 791 (1108)
.+ .+. +.............+..+++|+.|++++|........ ....+..+..+++|+.|++.++....
T Consensus 167 ~l----~l~-l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 237 (520)
T 2z7x_B 167 SL----HIV-FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY----FLSILAKLQTNPKLSNLTLNNIETTWNSF 237 (520)
T ss_dssp EE----EEE-CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH----HHHHHHGGGGCTTCCEEEEEEEEEEHHHH
T ss_pred eE----EEE-eccCcchhhhhhhhhhcccceeeccccccccccccce----eecchhhhccccchhhccccccccCHHHH
Confidence 11 111 1111111122334566788999999998753211111 11223356677899999998875431
Q ss_pred --CccccccCCcCcceEEEEeCCCCCCCCCC-C-----CCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecc
Q 001281 792 --FPMWIGDLSFSKMEVLELQNCQNCTSLPS-L-----SMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFE 863 (1108)
Q Consensus 792 --~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l-----~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~ 863 (1108)
++.+. ..++|+.|++++|.+.+.+|. + +.+++|+.+++++|.. .+|....+. ...-++|+.|.+.
T Consensus 238 ~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~--~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 238 IRILQLV---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYE--IFSNMNIKNFTVS 310 (520)
T ss_dssp HHHHHHH---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHH--HHHTCCCSEEEEE
T ss_pred HHHHHHh---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhc--ccccCceeEEEcC
Confidence 12222 135899999999988766663 5 7888888888888763 222110000 0001235555555
Q ss_pred cCCcccccccccCCccccCCcccEEeecCCCCCCCCCCCCCCCccEEEEccCCCccccCCCCCcccEEEEeecCCccc--
Q 001281 864 NLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPELLPSLEILVISKCADLVVPFSSFPMLCRLEIEECKGITC-- 941 (1108)
Q Consensus 864 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~c~~l~~-- 941 (1108)
++.-. ... ....+++|++|++++| ++++.+|. .+..+++|++|++++|.....
T Consensus 311 ~n~l~-~~~-----~~~~l~~L~~L~Ls~n-~l~~~~~~------------------~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 311 GTRMV-HML-----CPSKISPFLHLDFSNN-LLTDTVFE------------------NCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp SSCCC-CCC-----CCSSCCCCCEEECCSS-CCCTTTTT------------------TCCCCSSCCEEECCSSCCCBHHH
T ss_pred CCccc-ccc-----chhhCCcccEEEeECC-ccChhhhh------------------hhccCCCCCEEEccCCccCcccc
Confidence 43210 000 0134455555555553 33332332 234456666666666654321
Q ss_pred --cCCCCCCCccEEEEecCCccc-ccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCCCccEEEEeccCCcccc
Q 001281 942 --STPIDCKLIESMTISNSSLQI-YGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSW 1018 (1108)
Q Consensus 942 --~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~ 1018 (1108)
..+..+++|+.|++++|.+.. +. ...+..+++|++|++++|......+....++|++|++++|.
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~----- 432 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEK--------KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK----- 432 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGG--------GCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-----
T ss_pred chHHHhhCCCCCEEECCCCcCCcccc--------cchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-----
Confidence 124567777777777766654 21 11234678888888888765444443333789999999998
Q ss_pred ccccCCcccCCCCCCCcEeEeeccCccccccccc-cccCCCcceEeccccc
Q 001281 1019 LQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENSR 1068 (1108)
Q Consensus 1019 ~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c~ 1068 (1108)
+..+|..+..+++|++|+++ .+.++.+|.. +..+++|++|++++++
T Consensus 433 --l~~ip~~~~~l~~L~~L~L~--~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 433 --IKSIPKQVVKLEALQELNVA--SNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp --CCCCCGGGGGCTTCCEEECC--SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --ccccchhhhcCCCCCEEECC--CCcCCccCHHHhccCCcccEEECcCCC
Confidence 67888888899999999998 6688899986 6678999999998865
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.1e-26 Score=266.92 Aligned_cols=389 Identities=19% Similarity=0.136 Sum_probs=225.7
Q ss_pred CCCcccEEEecCccccccCcchhcCCCCcEEEeeCcccc-ccchhhhcCccC-------------cEeeecCCcCCcccc
Q 001281 593 KFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIR-SLPESTSSLMHL-------------RVLILRDCSRLTRLP 658 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L-------------~~L~l~~~~~~~~lp 658 (1108)
+...|++|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++.+| ++|++++|. +..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 357899999999999999999999999999999999987 789999998876 888888864 66666
Q ss_pred hhccCCCCccEEeecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhc
Q 001281 659 SKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAM 738 (1108)
Q Consensus 659 ~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 738 (1108)
.. .++|++|++++|. +..+|..+ ++|+.|+.... .+.. +. .
T Consensus 88 ~~---~~~L~~L~l~~n~-l~~lp~~~---~~L~~L~l~~n------~l~~------l~------------~-------- 128 (454)
T 1jl5_A 88 EL---PPHLESLVASCNS-LTELPELP---QSLKSLLVDNN------NLKA------LS------------D-------- 128 (454)
T ss_dssp SC---CTTCSEEECCSSC-CSSCCCCC---TTCCEEECCSS------CCSC------CC------------S--------
T ss_pred CC---cCCCCEEEccCCc-CCcccccc---CCCcEEECCCC------ccCc------cc------------C--------
Confidence 52 4678888888887 56677543 44554431110 0000 00 0
Q ss_pred cCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCC
Q 001281 739 LCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSL 818 (1108)
Q Consensus 739 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 818 (1108)
+ .++|+.|++++|.... +..+..+++|++|++++|....+|..+ .+|++|++++|.+.+ +
T Consensus 129 ~--~~~L~~L~L~~n~l~~------------lp~~~~l~~L~~L~l~~N~l~~lp~~~-----~~L~~L~L~~n~l~~-l 188 (454)
T 1jl5_A 129 L--PPLLEYLGVSNNQLEK------------LPELQNSSFLKIIDVDNNSLKKLPDLP-----PSLEFIAAGNNQLEE-L 188 (454)
T ss_dssp C--CTTCCEEECCSSCCSS------------CCCCTTCTTCCEEECCSSCCSCCCCCC-----TTCCEEECCSSCCSS-C
T ss_pred C--CCCCCEEECcCCCCCC------------CcccCCCCCCCEEECCCCcCcccCCCc-----ccccEEECcCCcCCc-C
Confidence 0 1577888887775421 113667788888888888887777643 478899999887755 6
Q ss_pred CCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCC
Q 001281 819 PSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSG 898 (1108)
Q Consensus 819 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 898 (1108)
|.++.+++|++|++++|... .++ ...++|+.|++.++. +..+. .+..+++|++|++++| +++
T Consensus 189 ~~~~~l~~L~~L~l~~N~l~-~l~---------~~~~~L~~L~l~~n~-l~~lp-----~~~~l~~L~~L~l~~N-~l~- 250 (454)
T 1jl5_A 189 PELQNLPFLTAIYADNNSLK-KLP---------DLPLSLESIVAGNNI-LEELP-----ELQNLPFLTTIYADNN-LLK- 250 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCS-SCC---------CCCTTCCEEECCSSC-CSSCC-----CCTTCTTCCEEECCSS-CCS-
T ss_pred ccccCCCCCCEEECCCCcCC-cCC---------CCcCcccEEECcCCc-CCccc-----ccCCCCCCCEEECCCC-cCC-
Confidence 77888889999999887632 232 124578888888752 33322 2567888999999885 665
Q ss_pred CCCCCCCCccEEEEccCCCccccCCCCCcccEEEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCC
Q 001281 899 KLPELLPSLEILVISKCADLVVPFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDS 978 (1108)
Q Consensus 899 ~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 978 (1108)
.+|..+++|+.|++++|..... ...+++|++|++++|....... ..++|+.|++++|.+..+.. .
T Consensus 251 ~l~~~~~~L~~L~l~~N~l~~l-~~~~~~L~~L~ls~N~l~~l~~--~~~~L~~L~l~~N~l~~i~~------------~ 315 (454)
T 1jl5_A 251 TLPDLPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRSLCD------------L 315 (454)
T ss_dssp SCCSCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSEESC--CCTTCCEEECCSSCCSEECC------------C
T ss_pred cccccccccCEEECCCCccccc-CcccCcCCEEECcCCccCcccC--cCCcCCEEECcCCcCCcccC------------C
Confidence 5777778899999988875432 1235788899998887443221 23688888888887664310 2
Q ss_pred CCCCcEEEEcccCCCcccccCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccc---ccccccc
Q 001281 979 KSLPTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVS---FSEVIFL 1055 (1108)
Q Consensus 979 ~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~---lp~~~~~ 1055 (1108)
.++|+.|+++++ .+..++ ..+++|++|++++|. +..+|. .+++|++|+++ .|.++. +|..+..
T Consensus 316 ~~~L~~L~Ls~N-~l~~lp-~~~~~L~~L~L~~N~-------l~~lp~---~l~~L~~L~L~--~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 316 PPSLEELNVSNN-KLIELP-ALPPRLERLIASFNH-------LAEVPE---LPQNLKQLHVE--YNPLREFPDIPESVED 381 (454)
T ss_dssp CTTCCEEECCSS-CCSCCC-CCCTTCCEEECCSSC-------CSCCCC---CCTTCCEEECC--SSCCSSCCCCCTTCCE
T ss_pred cCcCCEEECCCC-cccccc-ccCCcCCEEECCCCc-------cccccc---hhhhccEEECC--CCCCCcCCCChHHHHh
Confidence 358888888875 345554 346889999998887 556776 46888999997 556655 4555544
Q ss_pred C-------------CCcceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1056 M-------------NNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1056 l-------------~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
+ ++|+.|+++++ .++.+|. + .++|+.|.+.+|.
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~--i--P~sl~~L~~~~~~ 427 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETN-PLREFPD--I--PESVEDLRMNSER 427 (454)
T ss_dssp EECCC----------------------------------------------
T ss_pred hhhcccccccccccCcCCEEECCCC-cCCcccc--c--hhhHhheeCcCcc
Confidence 4 78999999875 5665443 1 2467777787774
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=8.4e-26 Score=271.92 Aligned_cols=428 Identities=16% Similarity=0.125 Sum_probs=267.2
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchhhhcCc
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPESTSSLM 641 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~ 641 (1108)
++++.|.+.++.. ..+++..|.++++|++|+|++|.++.+ |..|.++++|++|++++|.++.+|.. .++
T Consensus 52 ~~L~~L~Ls~N~i--------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSI--------SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp TTCCEEECCSSCC--------CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCcCEEECCCCCc--------cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 7888988877654 344556789999999999999999988 77899999999999999999999987 899
Q ss_pred cCcEeeecCCcCCccc--chhccCCCCccEEeecCCCCCCcCCccCCCCCCC--CccCceeeC----CCCCCCccccccc
Q 001281 642 HLRVLILRDCSRLTRL--PSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHL--QTLSNFIVG----KDTGSGLKDLKNL 713 (1108)
Q Consensus 642 ~L~~L~l~~~~~~~~l--p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L--~~L~~~~~~----~~~~~~l~~l~~L 713 (1108)
+|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| +.|...... ...+..+..+..
T Consensus 122 ~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~- 196 (562)
T 3a79_B 122 SLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT- 196 (562)
T ss_dssp TCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-
T ss_pred cCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCc-
Confidence 99999999976 4444 5789999999999999987 443 345566666 666433221 111222222221
Q ss_pred cccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCC---
Q 001281 714 KFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGE--- 790 (1108)
Q Consensus 714 ~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~--- 790 (1108)
+.+. +... ............+..+++|+.|++++|.... ..-...+..+...++|+.|++.++...
T Consensus 197 ~~l~--l~l~---~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~------~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 197 TVLH--LVFH---PNSLFSVQVNMSVNALGHLQLSNIKLNDENC------QRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp EEEE--EEEC---SSSCCCCCCEEEESSEEEEEEEEEECCSTTH------HHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred ceEE--EEec---CccchhhhhhhcccccceEEEeccccccccc------chHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 1221 1111 1111111223345667889999998774210 011122233455677888888766532
Q ss_pred --CCccccccCCcCcceEEEEeCCCCCCCCCC-C-----CCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEec
Q 001281 791 --NFPMWIGDLSFSKMEVLELQNCQNCTSLPS-L-----SMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRF 862 (1108)
Q Consensus 791 --~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l-----~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l 862 (1108)
.++.++. .++|++|++++|.+.+.+|. + ..++.|+.+++..+.. .+|..... .
T Consensus 266 ~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~-----~--------- 326 (562)
T 3a79_B 266 SVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY-----S--------- 326 (562)
T ss_dssp HHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH-----H---------
T ss_pred HHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh-----h---------
Confidence 2233322 35899999999988766663 3 4444444444444331 11100000 0
Q ss_pred ccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCCCCCCccEEEEccCCCcc---ccCCCCCcccEEEEeecCCc
Q 001281 863 ENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPELLPSLEILVISKCADLV---VPFSSFPMLCRLEIEECKGI 939 (1108)
Q Consensus 863 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~c~~l 939 (1108)
....++|++|++++|.-.....+..+++|++|++++|.... ..+..+++|++|++++|...
T Consensus 327 ----------------~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 390 (562)
T 3a79_B 327 ----------------VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390 (562)
T ss_dssp ----------------HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred ----------------hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence 00112345555555422111112344555555555554332 22345667777777776533
Q ss_pred cc----cCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCC-CCccEEEEeccCC
Q 001281 940 TC----STPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGF-QQVETLRIGNSEQ 1014 (1108)
Q Consensus 940 ~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l-~~L~~L~l~~~~~ 1014 (1108)
.. ..+..+++|+.|++++|.+... .+...+..+++|+.|++++|..-...+ ..+ ++|++|++++|.
T Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~-------~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~~L~~L~L~~N~- 461 (562)
T 3a79_B 391 NFFKVALMTKNMSSLETLDVSLNSLNSH-------AYDRTCAWAESILVLNLSSNMLTGSVF-RCLPPKVKVLDLHNNR- 461 (562)
T ss_dssp BTTHHHHTTTTCTTCCEEECTTSCCBSC-------CSSCCCCCCTTCCEEECCSSCCCGGGG-SSCCTTCSEEECCSSC-
T ss_pred CcccchhhhcCCCCCCEEECCCCcCCCc-------cChhhhcCcccCCEEECCCCCCCcchh-hhhcCcCCEEECCCCc-
Confidence 21 2356677888888887766541 112234467888888888875433333 444 689999999997
Q ss_pred ccccccccCCcccCCCCCCCcEeEeeccCccccccccc-cccCCCcceEeccccc
Q 001281 1015 IKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENSR 1068 (1108)
Q Consensus 1015 l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c~ 1068 (1108)
+..+|..+..+++|++|+++ .|.++.+|.. +..+++|+.|++++++
T Consensus 462 ------l~~ip~~~~~l~~L~~L~L~--~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 462 ------IMSIPKDVTHLQALQELNVA--SNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ------CCCCCTTTTSSCCCSEEECC--SSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred ------CcccChhhcCCCCCCEEECC--CCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 67888877899999999998 6788899886 6678999999998865
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.2e-24 Score=267.53 Aligned_cols=481 Identities=17% Similarity=0.126 Sum_probs=310.9
Q ss_pred CceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccC-cchhcCCCCcEEEeeCccccccch-hhhcCc
Q 001281 564 HLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSLPE-STSSLM 641 (1108)
Q Consensus 564 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~ 641 (1108)
.++.|.+.++.. ..+++..|.++++|++|+|++|.|+.+| .+|.++++|++|+|++|+|+.+|. .|.+|+
T Consensus 53 ~~~~LdLs~N~i--------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCEEEeeCCCC--------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 678888776654 3455677889999999999999999884 568999999999999999998875 578999
Q ss_pred cCcEeeecCCcCCcccch-hccCCCCccEEeecCCCCCCc--CCccCCCCCCCCccCcee--eCCCCCCCcccccccccc
Q 001281 642 HLRVLILRDCSRLTRLPS-KMWNLINLRHLDIEGANSLEG--MPYGMEKLKHLQTLSNFI--VGKDTGSGLKDLKNLKFL 716 (1108)
Q Consensus 642 ~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~~~~--~~~~~~~~l~~l~~L~~L 716 (1108)
+|++|++++|. +..+|. .++++++|++|++++|. +.. +|..++.+++|++|.... ........+..+.++..+
T Consensus 125 ~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 125 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp TCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 99999999975 555654 58899999999999987 443 566788888888885322 222222233444444333
Q ss_pred CceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCC---CCc
Q 001281 717 HGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGE---NFP 793 (1108)
Q Consensus 717 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~---~~p 793 (1108)
...+.. ..+.+....+. ......+..+++..+.... . ..... +.....++...+...... .+.
T Consensus 203 ~~~~~l----s~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~---~---~~~~~---~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 203 NLSLDL----SLNPMNFIQPG-AFKEIRLHKLTLRNNFDSL---N---VMKTC---IQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp CCEEEC----TTCCCCEECTT-TTTTCEEEEEEEESCCSSH---H---HHHHH---HHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhc----ccCcccccCcc-cccchhhhhhhhhcccccc---c---ccchh---hcCCcccccccccccccccccccc
Confidence 211111 11222111111 2223345566666543210 0 00111 222344444444332211 111
Q ss_pred ----cccccCCcCcceEEEEeCCCCCC----CCCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccC
Q 001281 794 ----MWIGDLSFSKMEVLELQNCQNCT----SLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENL 865 (1108)
Q Consensus 794 ----~~~~~~~l~~L~~L~L~~~~~~~----~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~ 865 (1108)
..+. .+..+..+.+..+.... ....+..+.+++.+.+.++......+ .....+|+.|.+.++
T Consensus 269 ~~~~~~~~--~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 269 KFDKSALE--GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--------FSYNFGWQHLELVNC 338 (635)
T ss_dssp CCCTTTTG--GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--------GGSCCCCSEEEEESC
T ss_pred cccccccc--cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--------cccchhhhhhhcccc
Confidence 1111 23455666655443321 22245667788888888765332211 234567888888775
Q ss_pred CcccccccccCCccccCCcccEEeecCCCCCCCCCC-CCCCCccEEEEccCCCccc-----cCCCCCcccEEEEeecCCc
Q 001281 866 PEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLP-ELLPSLEILVISKCADLVV-----PFSSFPMLCRLEIEECKGI 939 (1108)
Q Consensus 866 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~c~~l 939 (1108)
.- ... ....++.|+.+.+.++. .....+ ..+++|+.|++++|..... ....+.+|+.|++..+...
T Consensus 339 ~~-~~~------~~~~l~~L~~l~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~ 410 (635)
T 4g8a_A 339 KF-GQF------PTLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410 (635)
T ss_dssp EE-SSC------CCCBCTTCCEEEEESCC-SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred cc-cCc------Ccccchhhhhccccccc-CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence 32 111 12457788888888753 322222 2578999999998876432 1234678999998887643
Q ss_pred c-ccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc--cCCCCCccEEEEeccCCcc
Q 001281 940 T-CSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL--KQGFQQVETLRIGNSEQIK 1016 (1108)
Q Consensus 940 ~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~ 1016 (1108)
. ...+..+++|+.++++.+..... .....+..+.+++.++++.+..-...+ ...+++|+.|++++|..+
T Consensus 411 ~~~~~~~~l~~L~~l~l~~~~~~~~-------~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~- 482 (635)
T 4g8a_A 411 TMSSNFLGLEQLEHLDFQHSNLKQM-------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ- 482 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSEEEST-------TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG-
T ss_pred cccccccccccccchhhhhcccccc-------ccccccccccccccccccccccccccccccccchhhhhhhhhhcccc-
Confidence 3 23566789999999885544322 123455689999999998764333322 577899999999999752
Q ss_pred ccccccCCcccCCCCCCCcEeEeeccCcccccccc-ccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCc
Q 001281 1017 SWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSE-VIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNI 1095 (1108)
Q Consensus 1017 ~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L 1095 (1108)
....|..+..+++|++|+++ .+.++.++. .+.++++|++|+|++| +++.++...+..+++|++|++++|. +
T Consensus 483 ----~~~~~~~~~~l~~L~~L~Ls--~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l 554 (635)
T 4g8a_A 483 ----ENFLPDIFTELRNLTFLDLS--QCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-I 554 (635)
T ss_dssp ----GGEECSCCTTCTTCCEEECT--TSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC-C
T ss_pred ----cccCchhhhhccccCEEECC--CCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc-C
Confidence 22367889999999999998 668888865 5668999999999985 8999988789999999999999984 6
Q ss_pred ccccccc
Q 001281 1096 HRKKQAT 1102 (1108)
Q Consensus 1096 ~~~~~~~ 1102 (1108)
+.++...
T Consensus 555 ~~~~~~~ 561 (635)
T 4g8a_A 555 MTSKKQE 561 (635)
T ss_dssp CBCCSSC
T ss_pred CCCCHHH
Confidence 6665443
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.3e-24 Score=254.90 Aligned_cols=344 Identities=18% Similarity=0.239 Sum_probs=185.7
Q ss_pred CCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeec
Q 001281 594 FKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIE 673 (1108)
Q Consensus 594 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 673 (1108)
++.|+.|+++++.++.+|. +..+++|++|++++|.++.+|. ++++++|++|++++|. +..+|. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECC
Confidence 4567888888888877764 7778888888888888887776 7888888888888764 455555 7788888888888
Q ss_pred CCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEec
Q 001281 674 GANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWG 753 (1108)
Q Consensus 674 ~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 753 (1108)
+|. +..+|. ++++++|++|+..... + .. + ..+..+++|+.|++..+
T Consensus 121 ~n~-l~~~~~-~~~l~~L~~L~l~~n~------l------------------~~---~-----~~~~~l~~L~~L~l~~~ 166 (466)
T 1o6v_A 121 NNQ-ITDIDP-LKNLTNLNRLELSSNT------I------------------SD---I-----SALSGLTSLQQLSFGNQ 166 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEEEEEEEE------E------------------CC---C-----GGGTTCTTCSEEEEEES
T ss_pred CCC-CCCChH-HcCCCCCCEEECCCCc------c------------------CC---C-----hhhccCCcccEeecCCc
Confidence 776 555543 5555555555321110 0 00 0 01334455555555421
Q ss_pred CCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEec
Q 001281 754 SQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIK 833 (1108)
Q Consensus 754 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 833 (1108)
. .. ...+..+++|+.|+++++....++. +. .+++|+.|++++|.+.+..| ++.+++|+.|+++
T Consensus 167 ~-~~------------~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 167 V-TD------------LKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQISDITP-LGILTNLDELSLN 229 (466)
T ss_dssp C-CC------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECC
T ss_pred c-cC------------chhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCccccccc-ccccCCCCEEECC
Confidence 1 00 0113344555555555555444432 21 23455555555554433222 4444445555544
Q ss_pred CCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCC-CCCCCccEEEE
Q 001281 834 GMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLP-ELLPSLEILVI 912 (1108)
Q Consensus 834 ~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l 912 (1108)
+|. +..+ ..+..+++|+.|++++| .+++..| ..+++|+.|++
T Consensus 230 ~n~-------------------------------l~~~-----~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l 272 (466)
T 1o6v_A 230 GNQ-------------------------------LKDI-----GTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKL 272 (466)
T ss_dssp SSC-------------------------------CCCC-----GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEEC
T ss_pred CCC-------------------------------cccc-----hhhhcCCCCCEEECCCC-ccccchhhhcCCCCCEEEC
Confidence 432 1111 12456778888888886 4443222 24567777777
Q ss_pred ccCCCccc-cCCCCCcccEEEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccC
Q 001281 913 SKCADLVV-PFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVL 991 (1108)
Q Consensus 913 ~~~~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 991 (1108)
++|..... ++..+++|+.|++++|.......+..+++|+.|++++|.+..... +..+++|+.|++++|.
T Consensus 273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 273 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP----------VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG----------GGGCTTCCEEECCSSC
T ss_pred CCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh----------hccCccCCEeECCCCc
Confidence 77654432 244566666666666654443445556666666666555443211 2245555666655542
Q ss_pred CCccc-ccCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccc
Q 001281 992 EFGKF-LKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFS 1050 (1108)
Q Consensus 992 ~l~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp 1050 (1108)
+..+ .+..+++|+.|++++|+. ...+. +..+++|+.|+++ .+.++.+|
T Consensus 343 -l~~~~~l~~l~~L~~L~l~~n~l-------~~~~~-~~~l~~L~~L~l~--~n~~~~~p 391 (466)
T 1o6v_A 343 -VSDVSSLANLTNINWLSAGHNQI-------SDLTP-LANLTRITQLGLN--DQAWTNAP 391 (466)
T ss_dssp -CCCCGGGTTCTTCCEEECCSSCC-------CBCGG-GTTCTTCCEEECC--CEEEECCC
T ss_pred -cCCchhhccCCCCCEEeCCCCcc-------Cccch-hhcCCCCCEEecc--CCcccCCc
Confidence 2222 244555555555555552 22222 5555555555555 33444444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.6e-24 Score=249.55 Aligned_cols=186 Identities=18% Similarity=0.148 Sum_probs=112.7
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+.++++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEE
Confidence 445677888888888877776 5777888888888888887775 7778888888888764 55554 7778888888
Q ss_pred eecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEE
Q 001281 671 DIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSL 750 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 750 (1108)
++++|. +..+| ++.+++|+.|+..... +... .+..+++|+.|++
T Consensus 112 ~L~~N~-l~~l~--~~~l~~L~~L~l~~N~------------------------------l~~l---~l~~l~~L~~L~l 155 (457)
T 3bz5_A 112 NCDTNK-LTKLD--VSQNPLLTYLNCARNT------------------------------LTEI---DVSHNTQLTELDC 155 (457)
T ss_dssp ECCSSC-CSCCC--CTTCTTCCEEECTTSC------------------------------CSCC---CCTTCTTCCEEEC
T ss_pred ECCCCc-CCeec--CCCCCcCCEEECCCCc------------------------------ccee---ccccCCcCCEEEC
Confidence 888776 55554 6666666666311100 0000 1334455566666
Q ss_pred EecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEE
Q 001281 751 QWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQL 830 (1108)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 830 (1108)
+.|...+.. .+..+++|+.|++++|....+| +. .+++|+.|++++|.+... .++.+++|+.|
T Consensus 156 ~~n~~~~~~------------~~~~l~~L~~L~ls~n~l~~l~--l~--~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L 217 (457)
T 3bz5_A 156 HLNKKITKL------------DVTPQTQLTTLDCSFNKITELD--VS--QNKLLNRLNCDTNNITKL--DLNQNIQLTFL 217 (457)
T ss_dssp TTCSCCCCC------------CCTTCTTCCEEECCSSCCCCCC--CT--TCTTCCEEECCSSCCSCC--CCTTCTTCSEE
T ss_pred CCCCccccc------------ccccCCcCCEEECCCCccceec--cc--cCCCCCEEECcCCcCCee--ccccCCCCCEE
Confidence 555322111 1334556666666666555554 22 345666666666655432 35556666666
Q ss_pred EecCCC
Q 001281 831 TIKGMT 836 (1108)
Q Consensus 831 ~L~~~~ 836 (1108)
++++|.
T Consensus 218 ~Ls~N~ 223 (457)
T 3bz5_A 218 DCSSNK 223 (457)
T ss_dssp ECCSSC
T ss_pred ECcCCc
Confidence 666554
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.7e-24 Score=253.86 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=36.6
Q ss_pred cccEEEecCcccccc-CcchhcCCCCcEEEeeCcccc-cc-chhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 596 KLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIR-SL-PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~-~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
+|++|+|++|.++.+ |..|+++++|++|++++|.+. .+ |..+.++++|++|++++|......|..++++++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 444444444444443 344444444444444444443 22 233444444444444444332233444444444444444
Q ss_pred cCCC
Q 001281 673 EGAN 676 (1108)
Q Consensus 673 ~~~~ 676 (1108)
++|.
T Consensus 111 ~~n~ 114 (455)
T 3v47_A 111 TQCN 114 (455)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 4443
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.4e-24 Score=251.58 Aligned_cols=375 Identities=16% Similarity=0.147 Sum_probs=232.4
Q ss_pred CcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCc-------------cEEeecCCCC
Q 001281 611 PNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINL-------------RHLDIEGANS 677 (1108)
Q Consensus 611 p~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L-------------~~L~l~~~~~ 677 (1108)
|+.+ ...+|++|++++|.+..+|.++++|++|++|++++|...+.+|..++++++| ++|++++|.
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~- 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG- 82 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-
Confidence 4445 4589999999999999999999999999999999988777999999999876 899999887
Q ss_pred CCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCC
Q 001281 678 LEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFD 757 (1108)
Q Consensus 678 ~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 757 (1108)
+..+|... ++|+.|+... +.+.. .+. ...+|+.|++++|....
T Consensus 83 l~~lp~~~---~~L~~L~l~~------------------------------n~l~~-lp~---~~~~L~~L~l~~n~l~~ 125 (454)
T 1jl5_A 83 LSSLPELP---PHLESLVASC------------------------------NSLTE-LPE---LPQSLKSLLVDNNNLKA 125 (454)
T ss_dssp CSCCCSCC---TTCSEEECCS------------------------------SCCSS-CCC---CCTTCCEEECCSSCCSC
T ss_pred cccCCCCc---CCCCEEEccC------------------------------CcCCc-ccc---ccCCCcEEECCCCccCc
Confidence 77776532 4455443110 00111 011 12678888888775422
Q ss_pred CChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCC
Q 001281 758 SSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTR 837 (1108)
Q Consensus 758 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 837 (1108)
. ..+ +++|++|++++|....+|. +. .+++|++|++++|.+.+ +|.. .++|++|++++|..
T Consensus 126 l------------~~~--~~~L~~L~L~~n~l~~lp~-~~--~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 126 L------------SDL--PPLLEYLGVSNNQLEKLPE-LQ--NSSFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQL 185 (454)
T ss_dssp C------------CSC--CTTCCEEECCSSCCSSCCC-CT--TCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCC
T ss_pred c------------cCC--CCCCCEEECcCCCCCCCcc-cC--CCCCCCEEECCCCcCcc-cCCC--cccccEEECcCCcC
Confidence 1 111 2689999999999888883 54 46899999999998764 5542 36899999998863
Q ss_pred ceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC--CCCCccEEEEccC
Q 001281 838 LKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE--LLPSLEILVISKC 915 (1108)
Q Consensus 838 l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~--~l~~L~~L~l~~~ 915 (1108)
..++ . +..+++|+.|++.++. +..+. ...++|++|++++| .++ .+|. .+++|++|++++|
T Consensus 186 -~~l~-~------~~~l~~L~~L~l~~N~-l~~l~-------~~~~~L~~L~l~~n-~l~-~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 186 -EELP-E------LQNLPFLTAIYADNNS-LKKLP-------DLPLSLESIVAGNN-ILE-ELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp -SSCC-C------CTTCTTCCEEECCSSC-CSSCC-------CCCTTCCEEECCSS-CCS-SCCCCTTCTTCCEEECCSS
T ss_pred -CcCc-c------ccCCCCCCEEECCCCc-CCcCC-------CCcCcccEEECcCC-cCC-cccccCCCCCCCEEECCCC
Confidence 3343 2 3568899999988753 12111 23468999999996 665 5664 5678999999998
Q ss_pred CCccccCCCCCcccEEEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcc
Q 001281 916 ADLVVPFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGK 995 (1108)
Q Consensus 916 ~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 995 (1108)
.....+ ..+++|+.|++++|.....+ ..+++|+.|++++|.+..+.. ..++|+.|++++|. +..
T Consensus 248 ~l~~l~-~~~~~L~~L~l~~N~l~~l~--~~~~~L~~L~ls~N~l~~l~~------------~~~~L~~L~l~~N~-l~~ 311 (454)
T 1jl5_A 248 LLKTLP-DLPPSLEALNVRDNYLTDLP--ELPQSLTFLDVSENIFSGLSE------------LPPNLYYLNASSNE-IRS 311 (454)
T ss_dssp CCSSCC-SCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSEESC------------CCTTCCEEECCSSC-CSE
T ss_pred cCCccc-ccccccCEEECCCCcccccC--cccCcCCEEECcCCccCcccC------------cCCcCCEEECcCCc-CCc
Confidence 765322 23579999999998744322 235889999999887765421 23689999998864 343
Q ss_pred cccCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceEecccccCCCC---
Q 001281 996 FLKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKS--- 1072 (1108)
Q Consensus 996 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~--- 1072 (1108)
++ ...++|++|++++|. +..+|.. +++|++|+++ .+.++.+|. .+++|++|++++| .++.
T Consensus 312 i~-~~~~~L~~L~Ls~N~-------l~~lp~~---~~~L~~L~L~--~N~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ 374 (454)
T 1jl5_A 312 LC-DLPPSLEELNVSNNK-------LIELPAL---PPRLERLIAS--FNHLAEVPE---LPQNLKQLHVEYN-PLREFPD 374 (454)
T ss_dssp EC-CCCTTCCEEECCSSC-------CSCCCCC---CTTCCEEECC--SSCCSCCCC---CCTTCCEEECCSS-CCSSCCC
T ss_pred cc-CCcCcCCEEECCCCc-------ccccccc---CCcCCEEECC--CCccccccc---hhhhccEEECCCC-CCCcCCC
Confidence 33 223589999999998 5566654 5899999998 678999998 3799999999886 5555
Q ss_pred CcccCCCCC-------------CCccEEeeecCcCccc
Q 001281 1073 LPQEVMGNN-------------AQLEKLFIKYCDNIHR 1097 (1108)
Q Consensus 1073 lp~~~l~~l-------------~~L~~L~l~~c~~L~~ 1097 (1108)
+|. .+..+ ++|++|++++|+ ++.
T Consensus 375 ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~ 410 (454)
T 1jl5_A 375 IPE-SVEDLRMNSHLAEVPELPQNLKQLHVETNP-LRE 410 (454)
T ss_dssp CCT-TCCEEECCC-------------------------
T ss_pred ChH-HHHhhhhcccccccccccCcCCEEECCCCc-CCc
Confidence 555 56556 889999999985 443
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1e-23 Score=247.24 Aligned_cols=321 Identities=18% Similarity=0.211 Sum_probs=250.9
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+..+++|++|+|++|.++.+|. +.++++|++|++++|.++.+|. ++++++|++|++++|. +..+|. +.++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEE
Confidence 6678999999999999999976 9999999999999999999887 9999999999999974 667776 9999999999
Q ss_pred eecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEE
Q 001281 671 DIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSL 750 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 750 (1108)
++++|. +..+| .++.+++|+.|.... . + ... ..+..+++|+.|++
T Consensus 140 ~l~~n~-l~~~~-~~~~l~~L~~L~l~~-------------~---~------------~~~-----~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 140 ELSSNT-ISDIS-ALSGLTSLQQLSFGN-------------Q---V------------TDL-----KPLANLTTLERLDI 184 (466)
T ss_dssp EEEEEE-ECCCG-GGTTCTTCSEEEEEE-------------S---C------------CCC-----GGGTTCTTCCEEEC
T ss_pred ECCCCc-cCCCh-hhccCCcccEeecCC-------------c---c------------cCc-----hhhccCCCCCEEEC
Confidence 999997 66665 477777777774210 0 0 000 12566788999999
Q ss_pred EecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEE
Q 001281 751 QWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQL 830 (1108)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 830 (1108)
++|..... ..+..+++|+.|++++|....++. +. .+++|+.|++++|.+.. ++.+..+++|+.|
T Consensus 185 ~~n~l~~~------------~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L 248 (466)
T 1o6v_A 185 SSNKVSDI------------SVLAKLTNLESLIATNNQISDITP-LG--ILTNLDELSLNGNQLKD-IGTLASLTNLTDL 248 (466)
T ss_dssp CSSCCCCC------------GGGGGCTTCSEEECCSSCCCCCGG-GG--GCTTCCEEECCSSCCCC-CGGGGGCTTCSEE
T ss_pred cCCcCCCC------------hhhccCCCCCEEEecCCccccccc-cc--ccCCCCEEECCCCCccc-chhhhcCCCCCEE
Confidence 88764321 224567899999999998877765 33 46899999999998754 5678888999999
Q ss_pred EecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCC-CCCCCccE
Q 001281 831 TIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLP-ELLPSLEI 909 (1108)
Q Consensus 831 ~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~ 909 (1108)
++++|.... ++ .+..+++|+.|++++| .+++..+ ..+++|+.
T Consensus 249 ~l~~n~l~~-~~-----------------------------------~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~ 291 (466)
T 1o6v_A 249 DLANNQISN-LA-----------------------------------PLSGLTKLTELKLGAN-QISNISPLAGLTALTN 291 (466)
T ss_dssp ECCSSCCCC-CG-----------------------------------GGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSE
T ss_pred ECCCCcccc-ch-----------------------------------hhhcCCCCCEEECCCC-ccCccccccCCCccCe
Confidence 998875211 00 1345678888888886 4543222 35789999
Q ss_pred EEEccCCCccc-cCCCCCcccEEEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEc
Q 001281 910 LVISKCADLVV-PFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTIS 988 (1108)
Q Consensus 910 L~l~~~~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 988 (1108)
|++++|..... ++..+++|+.|++++|.......+..+++|+.|++++|.+... ..+..+++|+.|+++
T Consensus 292 L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 292 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV----------SSLANLTNINWLSAG 361 (466)
T ss_dssp EECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECC
T ss_pred EEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc----------hhhccCCCCCEEeCC
Confidence 99999986543 3667899999999999866655678899999999998877654 134489999999999
Q ss_pred ccCCCcccccCCCCCccEEEEeccC
Q 001281 989 NVLEFGKFLKQGFQQVETLRIGNSE 1013 (1108)
Q Consensus 989 ~c~~l~~~~~~~l~~L~~L~l~~~~ 1013 (1108)
+|......++..+++|+.|++++|+
T Consensus 362 ~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 362 HNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp SSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred CCccCccchhhcCCCCCEEeccCCc
Confidence 9877666678999999999999998
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3.8e-24 Score=248.15 Aligned_cols=226 Identities=16% Similarity=0.144 Sum_probs=157.7
Q ss_pred cccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhh
Q 001281 558 SLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPEST 637 (1108)
Q Consensus 558 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i 637 (1108)
.+..+++|+.|.+.++... .+ + .+..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~--------~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSIT--------DM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCCC--------CC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ChhHcCCCCEEEccCCCcc--------cC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c
Confidence 4556778888887765431 11 2 4778899999999999999886 889999999999999999886 8
Q ss_pred hcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccC
Q 001281 638 SSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLH 717 (1108)
Q Consensus 638 ~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~ 717 (1108)
+++++|++|++++|. +..+| ++++++|++|++++|. +..+| ++.+++|+.|+..........
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~------------ 164 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL------------ 164 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC------------
T ss_pred CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc------------
Confidence 899999999999975 56666 8899999999999997 66664 677777777742111100000
Q ss_pred ceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccc
Q 001281 718 GELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIG 797 (1108)
Q Consensus 718 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 797 (1108)
.+..+++|+.|++++|..... . +..+++|+.|++++|....++ +.
T Consensus 165 --------------------~~~~l~~L~~L~ls~n~l~~l------------~-l~~l~~L~~L~l~~N~l~~~~--l~ 209 (457)
T 3bz5_A 165 --------------------DVTPQTQLTTLDCSFNKITEL------------D-VSQNKLLNRLNCDTNNITKLD--LN 209 (457)
T ss_dssp --------------------CCTTCTTCCEEECCSSCCCCC------------C-CTTCTTCCEEECCSSCCSCCC--CT
T ss_pred --------------------ccccCCcCCEEECCCCcccee------------c-cccCCCCCEEECcCCcCCeec--cc
Confidence 134456777777776654221 1 445677788888777776653 33
Q ss_pred cCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecc
Q 001281 798 DLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFE 863 (1108)
Q Consensus 798 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~ 863 (1108)
.+++|+.|++++|.+.+ +| ++.+++|+.|++++|.... ++ ...+++|+.|.+.
T Consensus 210 --~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~-~~--------~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 210 --QNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTE-LD--------VSTLSKLTTLHCI 262 (457)
T ss_dssp --TCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSC-CC--------CTTCTTCCEEECT
T ss_pred --cCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCC-cC--------HHHCCCCCEEecc
Confidence 35788888888887755 55 7778888888888775322 22 1346666666543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=6.6e-23 Score=234.63 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=70.5
Q ss_pred CCCcccEEEecCccccccCcc-hhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 593 KFKKLRVLSLEGYYVTQLPNS-IKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
.+.++++|+++++.++.+|.. +..+++|++|++++|.++.+|. .++++++|++|++++|......|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 356888889998888888765 5788899999999888887764 78888888888888876444445567888888888
Q ss_pred eecCCCCCCcCCcc
Q 001281 671 DIEGANSLEGMPYG 684 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~ 684 (1108)
++++|. +..+|..
T Consensus 123 ~L~~n~-l~~l~~~ 135 (390)
T 3o6n_A 123 VLERND-LSSLPRG 135 (390)
T ss_dssp ECCSSC-CCCCCTT
T ss_pred ECCCCc-cCcCCHH
Confidence 888886 5555543
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.3e-23 Score=246.29 Aligned_cols=201 Identities=15% Similarity=0.077 Sum_probs=96.1
Q ss_pred EEEecCccccccCcchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCccc-chhccCCCCccEEeecCCC
Q 001281 599 VLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRL-PSKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 599 ~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~ 676 (1108)
.++.+++.++.+|. + .++|++|+|++|.|+.+ |..++++++|++|++++|.....+ |..+.++++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 44555555555554 2 24566666666666554 445566666666666665433333 3345556666666666655
Q ss_pred CCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhh--hccCCCCCCCceEEEecC
Q 001281 677 SLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGE--AMLCEKQNLQALSLQWGS 754 (1108)
Q Consensus 677 ~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~ 754 (1108)
.....|..++++++|++|+... +.+.+..+ ..+..+++|+.|++++|.
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~------------------------------n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQ------------------------------CNLDGAVLSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTT------------------------------SCCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred cCccChhhccCcccCCEEeCCC------------------------------CCCCccccCcccccCcccCCEEECCCCc
Confidence 2222344455555555553110 01111111 114444555555555554
Q ss_pred CCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCC-ccccccCCcCcceEEEEeCCCCCCCCC---------CCCCC
Q 001281 755 QFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENF-PMWIGDLSFSKMEVLELQNCQNCTSLP---------SLSML 824 (1108)
Q Consensus 755 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~---------~l~~l 824 (1108)
.....+.. .+..+++|++|++++|..... |..+......+|+.|++++|.+....+ .+..+
T Consensus 141 l~~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 141 IKKIQPAS---------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CCSCCCCG---------GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred cCccCccc---------ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 32211110 023345556666655554433 233332223566666666666543222 12345
Q ss_pred CCccEEEecCCCCceee
Q 001281 825 GSLKQLTIKGMTRLKSI 841 (1108)
Q Consensus 825 ~~L~~L~L~~~~~l~~i 841 (1108)
++|++|++++|......
T Consensus 212 ~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 212 TSITTLDLSGNGFKESM 228 (455)
T ss_dssp CEEEEEECTTSCCCHHH
T ss_pred ceeeeEecCCCcccccc
Confidence 66777777776544333
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.5e-22 Score=226.14 Aligned_cols=81 Identities=30% Similarity=0.450 Sum_probs=54.6
Q ss_pred cCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEe
Q 001281 592 PKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLD 671 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 671 (1108)
..+++|++|+++++.++.+|. +..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEE
Confidence 355677777777777776653 6677777777777777776665 6777777777777753 44454 366677777777
Q ss_pred ecCCC
Q 001281 672 IEGAN 676 (1108)
Q Consensus 672 l~~~~ 676 (1108)
+++|.
T Consensus 117 l~~n~ 121 (347)
T 4fmz_A 117 LNEDN 121 (347)
T ss_dssp CTTSC
T ss_pred CcCCc
Confidence 76664
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.1e-22 Score=225.36 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=65.8
Q ss_pred ccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhh
Q 001281 559 LYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTS 638 (1108)
Q Consensus 559 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~ 638 (1108)
+..+++++.|.+.++... . ++ .+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+.
T Consensus 40 ~~~l~~L~~L~l~~~~i~--------~-~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA--------S-IQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp HHHHTTCSEEECCSSCCC--------C-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred chhcccccEEEEeCCccc--------c-ch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHc
Confidence 345566666666544321 1 11 25566777777777777776655 667777777777777776664 467
Q ss_pred cCccCcEeeecCCcCCcccchhccCCCCccEEeecCCC
Q 001281 639 SLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 639 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 676 (1108)
++++|++|++++|. +..+|. +..+++|++|++++|.
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCT
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCC
Confidence 77777777777754 455555 6677777777776664
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.4e-22 Score=239.77 Aligned_cols=88 Identities=16% Similarity=0.263 Sum_probs=61.4
Q ss_pred CCcccEEEecCccccccCcc-hhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchhccCCCCccEEe
Q 001281 594 FKKLRVLSLEGYYVTQLPNS-IKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLD 671 (1108)
Q Consensus 594 l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 671 (1108)
+.++++|++++|.++.+|.. +..+++|++|+|++|.|+.+|. .++.+++|++|+|++|......|..++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46778888888888777654 5777888888888888776654 677778888888877654333344567777777777
Q ss_pred ecCCCCCCcCC
Q 001281 672 IEGANSLEGMP 682 (1108)
Q Consensus 672 l~~~~~~~~lp 682 (1108)
+++|. +..+|
T Consensus 130 L~~n~-l~~l~ 139 (597)
T 3oja_B 130 LERND-LSSLP 139 (597)
T ss_dssp CCSSC-CCCCC
T ss_pred eeCCC-CCCCC
Confidence 77775 43333
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.3e-21 Score=223.97 Aligned_cols=301 Identities=17% Similarity=0.151 Sum_probs=208.5
Q ss_pred CCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccC-cchhcCCCCcEEEeeCccccccc-hhhh
Q 001281 561 EVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSLP-ESTS 638 (1108)
Q Consensus 561 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~lp-~~i~ 638 (1108)
.+++++.+.+.++.. ..+++..|..+++|++|+|++|.++.+| ..+..+++|++|++++|.++.+| ..++
T Consensus 43 ~l~~l~~l~l~~~~l--------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM--------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCEE--------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCch--------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 467888888766543 3455566788999999999999999885 58999999999999999999885 4589
Q ss_pred cCccCcEeeecCCcCCcccchh-ccCCCCccEEeecCCCCCCcCC-ccCCCCCCCCccCceeeCCCCCCCcccccccccc
Q 001281 639 SLMHLRVLILRDCSRLTRLPSK-MWNLINLRHLDIEGANSLEGMP-YGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFL 716 (1108)
Q Consensus 639 ~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L 716 (1108)
++++|++|++++|. +..+|.. ++++++|++|++++|. +..++ ..++.+++|++|...... +.
T Consensus 115 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~------l~-------- 178 (390)
T 3o6n_A 115 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR------LT-------- 178 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC------CS--------
T ss_pred CCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc------CC--------
Confidence 99999999999975 6778876 5899999999999998 55554 457888888877522111 00
Q ss_pred CceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCcccc
Q 001281 717 HGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWI 796 (1108)
Q Consensus 717 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~ 796 (1108)
.. .+..+++|+.|++++|... .+..+++|++|+++++....+|...
T Consensus 179 ----------------~~---~~~~l~~L~~L~l~~n~l~---------------~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 179 ----------------HV---DLSLIPSLFHANVSYNLLS---------------TLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp ----------------BC---CGGGCTTCSEEECCSSCCS---------------EEECCSSCSEEECCSSCCCEEECCC
T ss_pred ----------------cc---ccccccccceeeccccccc---------------ccCCCCcceEEECCCCeeeeccccc
Confidence 00 1334567777777766431 1234568889999988887776544
Q ss_pred ccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccC
Q 001281 797 GDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKEN 876 (1108)
Q Consensus 797 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 876 (1108)
+++|+.|++++|.+.. .+.+..+++|++|++++|......+..| ..+++|+.|++.+.. +..+.
T Consensus 225 ----~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~-l~~~~---- 288 (390)
T 3o6n_A 225 ----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNNR-LVALN---- 288 (390)
T ss_dssp ----CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECCSSC-CCEEE----
T ss_pred ----cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHc------cccccCCEEECCCCc-CcccC----
Confidence 3689999999998754 4678888999999999887544444332 346777777777642 22221
Q ss_pred CccccCCcccEEeecCCCCCCCCCCC---CCCCccEEEEccCCCccccCCCCCcccEEEEeecC
Q 001281 877 GLLAGFSSLRELSILKCPKFSGKLPE---LLPSLEILVISKCADLVVPFSSFPMLCRLEIEECK 937 (1108)
Q Consensus 877 ~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~c~ 937 (1108)
.....+++|++|++++| .++ .+|. .+++|+.|++++|+....++..+++|+.|++++|+
T Consensus 289 ~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred cccCCCCCCCEEECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 12345677777777775 453 4443 24566666666666544444445555555555544
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.8e-21 Score=233.59 Aligned_cols=301 Identities=17% Similarity=0.155 Sum_probs=210.7
Q ss_pred CCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccC-cchhcCCCCcEEEeeCccccccch-hhh
Q 001281 561 EVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSLPE-STS 638 (1108)
Q Consensus 561 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~lp~-~i~ 638 (1108)
.+.+++.+.+.++.. ..+++..|..+++|++|+|++|.++.+| ..|+.+++|++|+|++|.++.+|+ .++
T Consensus 49 ~l~~l~~l~l~~~~l--------~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM--------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCEE--------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCCC--------CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 456788887765432 3456667888999999999999999885 589999999999999999998865 469
Q ss_pred cCccCcEeeecCCcCCcccchh-ccCCCCccEEeecCCCCCCcCC-ccCCCCCCCCccCceeeCCCCCCCcccccccccc
Q 001281 639 SLMHLRVLILRDCSRLTRLPSK-MWNLINLRHLDIEGANSLEGMP-YGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFL 716 (1108)
Q Consensus 639 ~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L 716 (1108)
++++|++|+|++|. +..+|.. ++++++|++|++++|. +..+| ..++.+++|++|+..... +. .+
T Consensus 121 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~------l~------~~ 186 (597)
T 3oja_B 121 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR------LT------HV 186 (597)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC------CS------BC
T ss_pred CCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC------CC------Cc
Confidence 99999999999975 6677766 5899999999999998 55554 458888888888521110 00 00
Q ss_pred CceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCcccc
Q 001281 717 HGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWI 796 (1108)
Q Consensus 717 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~ 796 (1108)
.+..+++|+.|++++|... .+..+++|+.|++++|.+..+|..+
T Consensus 187 ---------------------~~~~l~~L~~L~l~~n~l~---------------~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 187 ---------------------DLSLIPSLFHANVSYNLLS---------------TLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp ---------------------CGGGCTTCSEEECCSSCCS---------------EEECCTTCSEEECCSSCCCEEECSC
T ss_pred ---------------------ChhhhhhhhhhhcccCccc---------------cccCCchhheeeccCCccccccccc
Confidence 1233567777777766431 1334567899999988887777654
Q ss_pred ccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccC
Q 001281 797 GDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKEN 876 (1108)
Q Consensus 797 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 876 (1108)
. ++|+.|+|++|.+.+ ++.++.+++|+.|+|++|......+..| ..+++|+.|++.++. +..+.
T Consensus 231 ~----~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~Ls~N~-l~~l~---- 294 (597)
T 3oja_B 231 N----VELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNNR-LVALN---- 294 (597)
T ss_dssp C----SCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECTTSC-CCEEE----
T ss_pred C----CCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHh------cCccCCCEEECCCCC-CCCCC----
Confidence 3 689999999998755 4678889999999999887555544333 346777777777642 22221
Q ss_pred CccccCCcccEEeecCCCCCCCCCCC---CCCCccEEEEccCCCccccCCCCCcccEEEEeecC
Q 001281 877 GLLAGFSSLRELSILKCPKFSGKLPE---LLPSLEILVISKCADLVVPFSSFPMLCRLEIEECK 937 (1108)
Q Consensus 877 ~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~c~ 937 (1108)
.....+|+|+.|++++| .++ .+|. .+++|+.|++++|.....++..+++|+.|++++|+
T Consensus 295 ~~~~~l~~L~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CSSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred cccccCCCCcEEECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 12345777777777775 443 4553 24566666666666554445555555555555554
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=7.4e-21 Score=224.13 Aligned_cols=99 Identities=25% Similarity=0.366 Sum_probs=63.2
Q ss_pred CcccEEEecCcccccc-CcchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccch-hccCCCCccEEe
Q 001281 595 KKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLD 671 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 671 (1108)
+.+++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..++++++|++|+|++|. +..+|. .+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 4677777777777766 45677777777777777777765 5667777777777777754 455554 356777777777
Q ss_pred ecCCCCCCcCCccCCCCCCCCcc
Q 001281 672 IEGANSLEGMPYGMEKLKHLQTL 694 (1108)
Q Consensus 672 l~~~~~~~~lp~~i~~L~~L~~L 694 (1108)
+++|......|..+..+++|+.|
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccccCChhHccccccCCEE
Confidence 77776322223344444444444
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=224.26 Aligned_cols=292 Identities=19% Similarity=0.202 Sum_probs=199.3
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchh-hhcC
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPES-TSSL 640 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L 640 (1108)
++++.|.+.++.. ..+.+..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|.. +.++
T Consensus 32 ~~l~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 32 TETRLLDLGKNRI--------KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp TTCSEEECCSSCC--------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCcEEECCCCcc--------ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 4677777766543 234456788999999999999999877 78899999999999999999999865 6899
Q ss_pred ccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcC-CccCCCCCCCCccCceeeCCCCCCCccccccccccCce
Q 001281 641 MHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGM-PYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGE 719 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~ 719 (1108)
++|++|++++|......|..+.++++|++|++++|. +..+ |..+..+++|+.|.....
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-------------------- 162 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC-------------------- 162 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC--------------------
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC--------------------
Confidence 999999999987666667788999999999999987 4444 456777777777642211
Q ss_pred eEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCC-CCCcccccc
Q 001281 720 LCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSG-ENFPMWIGD 798 (1108)
Q Consensus 720 l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~~~p~~~~~ 798 (1108)
.+.......+..+++|+.|++++|....... ..+..+++|+.|+++++.. ..+|.....
T Consensus 163 ----------~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~----------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 163 ----------NLTSIPTEALSHLHGLIVLRLRHLNINAIRD----------YSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp ----------CCSSCCHHHHTTCTTCCEEEEESCCCCEECT----------TCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred ----------cCcccChhHhcccCCCcEEeCCCCcCcEeCh----------hhcccCcccceeeCCCCccccccCccccc
Confidence 1111122335566777777777765432111 2355667788888877643 334544432
Q ss_pred CCcCcceEEEEeCCCCCCCCC--CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccC
Q 001281 799 LSFSKMEVLELQNCQNCTSLP--SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKEN 876 (1108)
Q Consensus 799 ~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 876 (1108)
..+|+.|+|++|.+.. +| .+..+++|+.|+|++|... .++.. .+..+++|+.|.+.+.. +..+ .+
T Consensus 223 --~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~-----~~~~l~~L~~L~L~~n~-l~~~---~~ 289 (477)
T 2id5_A 223 --GLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPIS-TIEGS-----MLHELLRLQEIQLVGGQ-LAVV---EP 289 (477)
T ss_dssp --TCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCC-EECTT-----SCTTCTTCCEEECCSSC-CSEE---CT
T ss_pred --CccccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCC-ccChh-----hccccccCCEEECCCCc-cceE---CH
Confidence 3478888888887653 44 3677788888888877633 33321 12357778888877642 1221 23
Q ss_pred CccccCCcccEEeecCCCCCCCCCCC----CCCCccEEEEccCCCc
Q 001281 877 GLLAGFSSLRELSILKCPKFSGKLPE----LLPSLEILVISKCADL 918 (1108)
Q Consensus 877 ~~~~~~~~L~~L~l~~c~~l~~~~p~----~l~~L~~L~l~~~~~l 918 (1108)
..+..+++|+.|++++| +++ .+|. .+++|+.|++++|+..
T Consensus 290 ~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGN-QLT-TLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTBTTCTTCCEEECCSS-CCS-CCCGGGBSCGGGCCEEECCSSCEE
T ss_pred HHhcCcccCCEEECCCC-cCc-eeCHhHcCCCcccCEEEccCCCcc
Confidence 34667888888888885 665 3432 4567888888888743
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=9.4e-20 Score=201.91 Aligned_cols=191 Identities=24% Similarity=0.316 Sum_probs=137.9
Q ss_pred CCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 593 KFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
....+++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 357899999999999999999999999999999999999999999999999999999975 5699999999999999999
Q ss_pred cCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEe
Q 001281 673 EGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQW 752 (1108)
Q Consensus 673 ~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 752 (1108)
++|.....+|..++... + ...+..+++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~--------------------------~-------------------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTD--------------------------A-------------------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhcc--------------------------c-------------------hhhhccCCCCCEEECcC
Confidence 99887777776543210 0 00133445666677766
Q ss_pred cCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEE
Q 001281 753 GSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLT 831 (1108)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 831 (1108)
|... ..+ ..+..+++|++|++++|....+|..+. .+++|+.|+|++|.+.+.+| .++.+++|++|+
T Consensus 193 n~l~-~lp----------~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 193 TGIR-SLP----------ASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp ECCC-CCC----------GGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCcC-cch----------HhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 6542 111 113445566666666666666666554 34666677777666666555 366666666666
Q ss_pred ecCCCCceeeC
Q 001281 832 IKGMTRLKSIG 842 (1108)
Q Consensus 832 L~~~~~l~~i~ 842 (1108)
+++|..+..++
T Consensus 260 L~~n~~~~~~p 270 (328)
T 4fcg_A 260 LKDCSNLLTLP 270 (328)
T ss_dssp CTTCTTCCBCC
T ss_pred CCCCCchhhcc
Confidence 66665544444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2.1e-19 Score=200.32 Aligned_cols=243 Identities=18% Similarity=0.185 Sum_probs=161.4
Q ss_pred cccEEEecCccccccCcchhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecC
Q 001281 596 KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEG 674 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 674 (1108)
.+++++++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|......|..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 67888888888888887664 688899999998888865 688899999999988765444477888899999999988
Q ss_pred CCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecC
Q 001281 675 ANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGS 754 (1108)
Q Consensus 675 ~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 754 (1108)
|. +..+|..+. ++|++|... .+.+....+..+..+++|+.|+++.|.
T Consensus 110 n~-l~~l~~~~~--~~L~~L~l~------------------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 110 NQ-LKELPEKMP--KTLQELRVH------------------------------ENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp SC-CSBCCSSCC--TTCCEEECC------------------------------SSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred Cc-CCccChhhc--ccccEEECC------------------------------CCcccccCHhHhcCCccccEEECCCCc
Confidence 87 667776553 445544311 111222223346667788888887765
Q ss_pred CCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEec
Q 001281 755 QFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIK 833 (1108)
Q Consensus 755 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 833 (1108)
.... ......+..+++|+.|+++++....+|..+. ++|+.|++++|.+....+ .+..+++|+.|+++
T Consensus 157 l~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 157 LKSS--------GIENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CCGG--------GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC----TTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred CCcc--------CcChhhccCCCCcCEEECCCCccccCCcccc----ccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 4210 0111234556788888888888888876653 688889998888766544 57888888888888
Q ss_pred CCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCC
Q 001281 834 GMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFS 897 (1108)
Q Consensus 834 ~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 897 (1108)
+|......+.. +..+++|+.|++.++. +..+ +..+..+++|++|++++| .++
T Consensus 225 ~n~l~~~~~~~------~~~l~~L~~L~L~~N~-l~~l----p~~l~~l~~L~~L~l~~N-~i~ 276 (330)
T 1xku_A 225 FNSISAVDNGS------LANTPHLRELHLNNNK-LVKV----PGGLADHKYIQVVYLHNN-NIS 276 (330)
T ss_dssp SSCCCEECTTT------GGGSTTCCEEECCSSC-CSSC----CTTTTTCSSCCEEECCSS-CCC
T ss_pred CCcCceeChhh------ccCCCCCCEEECCCCc-CccC----ChhhccCCCcCEEECCCC-cCC
Confidence 87633332212 2345666666666542 2211 122455666666666664 443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=4.6e-19 Score=197.66 Aligned_cols=242 Identities=17% Similarity=0.156 Sum_probs=156.0
Q ss_pred cccEEEecCccccccCcchhcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecC
Q 001281 596 KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEG 674 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 674 (1108)
.+++++++++.++.+|..+. ++|++|++++|.++.+| ..+.++++|++|++++|......|..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 57788888888888877663 57888888888888774 4678888888888888754444467788888888888888
Q ss_pred CCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecC
Q 001281 675 ANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGS 754 (1108)
Q Consensus 675 ~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 754 (1108)
|. +..+|..+. ++|++|+... +.+.......+..+++|+.|++++|.
T Consensus 112 n~-l~~l~~~~~--~~L~~L~l~~------------------------------n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 112 NH-LVEIPPNLP--SSLVELRIHD------------------------------NRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp SC-CCSCCSSCC--TTCCEEECCS------------------------------SCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred Cc-CCccCcccc--ccCCEEECCC------------------------------CccCccCHhHhCCCccCCEEECCCCc
Confidence 76 667776554 4555553111 11111122235566777788877765
Q ss_pred CCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEec
Q 001281 755 QFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIK 833 (1108)
Q Consensus 755 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 833 (1108)
.... ......+..+ +|+.|++++|....+|..+. ++|+.|++++|.+....+ .+..+++|+.|+++
T Consensus 159 l~~~--------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 159 LENS--------GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CBGG--------GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred cccC--------CCCcccccCC-ccCEEECcCCCCCccCcccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 4210 0111223334 78888888888888887653 688999999988866554 58888999999998
Q ss_pred CCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCC
Q 001281 834 GMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFS 897 (1108)
Q Consensus 834 ~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 897 (1108)
+|......+.. +..+++|+.|++.++. +..+ +..+..+++|+.|++++| .++
T Consensus 226 ~N~l~~~~~~~------~~~l~~L~~L~L~~N~-l~~l----p~~l~~l~~L~~L~l~~N-~l~ 277 (332)
T 2ft3_A 226 HNQIRMIENGS------LSFLPTLRELHLDNNK-LSRV----PAGLPDLKLLQVVYLHTN-NIT 277 (332)
T ss_dssp SSCCCCCCTTG------GGGCTTCCEEECCSSC-CCBC----CTTGGGCTTCCEEECCSS-CCC
T ss_pred CCcCCcCChhH------hhCCCCCCEEECCCCc-Ceec----ChhhhcCccCCEEECCCC-CCC
Confidence 87633322211 2346677777776642 2222 122456677777777764 454
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=5.6e-20 Score=202.56 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=128.7
Q ss_pred hhhccCCCcccEEEecC-cccc-ccCcchhcCCCCcEEEeeCcccc-ccchhhhcCccCcEeeecCCcCCcccchhccCC
Q 001281 588 SDMLPKFKKLRVLSLEG-YYVT-QLPNSIKELKLLRYLNVAGTQIR-SLPESTSSLMHLRVLILRDCSRLTRLPSKMWNL 664 (1108)
Q Consensus 588 ~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L 664 (1108)
+..+.++++|++|+|++ |.+. .+|..|+++++|++|++++|.++ .+|..++++++|++|++++|.....+|..++++
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 34566777777777774 6665 56777777777888888777777 667777777778888877766555677777777
Q ss_pred CCccEEeecCCCCCCcCCccCCCCC-CCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCC
Q 001281 665 INLRHLDIEGANSLEGMPYGMEKLK-HLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQ 743 (1108)
Q Consensus 665 ~~L~~L~l~~~~~~~~lp~~i~~L~-~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 743 (1108)
++|++|++++|.....+|..++.++ +|+.|+.... .+....+..+..+.
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N------------------------------~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN------------------------------RLTGKIPPTFANLN 198 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS------------------------------EEEEECCGGGGGCC
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC------------------------------eeeccCChHHhCCc
Confidence 7788887777773336677776666 6666631110 00011111122222
Q ss_pred CCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCC
Q 001281 744 NLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLS 822 (1108)
Q Consensus 744 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~ 822 (1108)
|+.|++++|...... ...+..+++|+.|++++|.....+..+. .+++|++|+|++|.+.+.+| .+.
T Consensus 199 -L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDA----------SVLFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp -CSEEECCSSEEEECC----------GGGCCTTSCCSEEECCSSEECCBGGGCC--CCTTCCEEECCSSCCEECCCGGGG
T ss_pred -ccEEECcCCcccCcC----------CHHHhcCCCCCEEECCCCceeeecCccc--ccCCCCEEECcCCcccCcCChHHh
Confidence 455555444321111 1123444555555555555443333332 23556666666655544444 355
Q ss_pred CCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCC
Q 001281 823 MLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLP 866 (1108)
Q Consensus 823 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~ 866 (1108)
.+++|++|++++|.....+|.. ..+++|+.|.+.+.+
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANNK 302 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSSS
T ss_pred cCcCCCEEECcCCcccccCCCC-------ccccccChHHhcCCC
Confidence 5566666666555533343321 235555555555544
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=7.4e-21 Score=231.19 Aligned_cols=206 Identities=12% Similarity=0.103 Sum_probs=121.3
Q ss_pred hhhhccCCCcccEEEecCcccccc-CcchhcC--CCCcEEEeeCcc-cc--ccchhhhcCccCcEeeecCCcCCcc----
Q 001281 587 LSDMLPKFKKLRVLSLEGYYVTQL-PNSIKEL--KLLRYLNVAGTQ-IR--SLPESTSSLMHLRVLILRDCSRLTR---- 656 (1108)
Q Consensus 587 ~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l--~~L~~L~Ls~~~-i~--~lp~~i~~L~~L~~L~l~~~~~~~~---- 656 (1108)
+...+..+++|++|+|++|.++.. +..+... .+|++|+|++|. +. .++..+.++++|++|++++|.....
T Consensus 104 l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred HHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 344455788899999999887633 4555553 349999998875 22 3444456888999999998864332
Q ss_pred cchhccCCCCccEEeecCCCCCCc-----CCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCCh
Q 001281 657 LPSKMWNLINLRHLDIEGANSLEG-----MPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDL 731 (1108)
Q Consensus 657 lp~~i~~L~~L~~L~l~~~~~~~~-----lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~ 731 (1108)
++.....+++|++|++++|. +.. ++..+.++++|++|.. .+ +..
T Consensus 184 l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L--------------------------~~----~~~ 232 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKV--------------------------GD----FEI 232 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEEC--------------------------SS----CBG
T ss_pred HHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEec--------------------------cC----ccH
Confidence 44445678889999998876 331 2222233444444421 10 111
Q ss_pred hhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeC
Q 001281 732 REAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQN 811 (1108)
Q Consensus 732 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~ 811 (1108)
.. .+..+..+++|+.|+++....... .......+..+++|+.|.+.++....+|..+. .+++|++|+|++
T Consensus 233 ~~-l~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 233 LE-LVGFFKAAANLEEFCGGSLNEDIG-------MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLY 302 (592)
T ss_dssp GG-GHHHHHHCTTCCEEEECBCCCCTT-------CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGG--GGGGCCEEEETT
T ss_pred HH-HHHHHhhhhHHHhhcccccccccc-------hHHHHHHhhccccccccCccccchhHHHHHHh--hcCCCcEEecCC
Confidence 11 223455567788887764321100 01223345566777777777665556666554 356788888887
Q ss_pred CCCCCCCC--CCCCCCCccEEEec
Q 001281 812 CQNCTSLP--SLSMLGSLKQLTIK 833 (1108)
Q Consensus 812 ~~~~~~l~--~l~~l~~L~~L~L~ 833 (1108)
|.+..... .+..+++|+.|++.
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred CcCCHHHHHHHHHhCcCCCEEecc
Confidence 76422111 14667777777776
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=7.8e-19 Score=195.78 Aligned_cols=244 Identities=17% Similarity=0.173 Sum_probs=124.2
Q ss_pred CcccEEEecCcccccc-CcchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 595 KKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
+.|++|+|++|.++.+ |..+.++++|++|++++|.++.+ |..++++++|++|++++|. +..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEEC
Confidence 3566666666666655 34566666666666666666655 4556666666666666643 445555444 56666666
Q ss_pred cCCCCCCcCCcc-CCCCCCCCccCceeeCC----CCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCc
Q 001281 673 EGANSLEGMPYG-MEKLKHLQTLSNFIVGK----DTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQA 747 (1108)
Q Consensus 673 ~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~----~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 747 (1108)
++|. +..+|.. +..+++|+.|+...... .....+..+ +|+.|. + ..+.+.. .+..+ .++|+.
T Consensus 131 ~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~----l----~~n~l~~-l~~~~--~~~L~~ 197 (332)
T 2ft3_A 131 HDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR----I----SEAKLTG-IPKDL--PETLNE 197 (332)
T ss_dssp CSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB----C----CSSBCSS-CCSSS--CSSCSC
T ss_pred CCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE----C----cCCCCCc-cCccc--cCCCCE
Confidence 6665 4444443 55555555553211110 111122222 333332 0 0011111 11111 146777
Q ss_pred eEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCcc-ccccCCcCcceEEEEeCCCCCCCCCCCCCCCC
Q 001281 748 LSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPM-WIGDLSFSKMEVLELQNCQNCTSLPSLSMLGS 826 (1108)
Q Consensus 748 L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 826 (1108)
|++++|......+ ..+..+++|+.|++++|....++. ++. .+++|+.|+|++|.+....+.+..+++
T Consensus 198 L~l~~n~i~~~~~----------~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~lp~~l~~l~~ 265 (332)
T 2ft3_A 198 LHLDHNKIQAIEL----------EDLLRYSKLYRLGLGHNQIRMIENGSLS--FLPTLRELHLDNNKLSRVPAGLPDLKL 265 (332)
T ss_dssp CBCCSSCCCCCCT----------TSSTTCTTCSCCBCCSSCCCCCCTTGGG--GCTTCCEEECCSSCCCBCCTTGGGCTT
T ss_pred EECCCCcCCccCH----------HHhcCCCCCCEEECCCCcCCcCChhHhh--CCCCCCEEECCCCcCeecChhhhcCcc
Confidence 7777665432221 235556677777777777666654 343 356777777777766533334677777
Q ss_pred ccEEEecCCCCceeeCcccccCcccCcCCccceEecccCC
Q 001281 827 LKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLP 866 (1108)
Q Consensus 827 L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~ 866 (1108)
|++|++++|......+..|.+......++.|+.|.+.+.+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 7777777765322222222221111224455555555543
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=8e-20 Score=201.31 Aligned_cols=248 Identities=13% Similarity=0.150 Sum_probs=169.0
Q ss_pred CcccEEEecCcccc---ccCcchhcCCCCcEEEeeC-cccc-ccchhhhcCccCcEeeecCCcCCcccchhccCCCCccE
Q 001281 595 KKLRVLSLEGYYVT---QLPNSIKELKLLRYLNVAG-TQIR-SLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRH 669 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~---~lp~~i~~l~~L~~L~Ls~-~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 669 (1108)
..++.|+|++|.++ .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 8887 78999999999999999998766689999999999999
Q ss_pred EeecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCC-CCCce
Q 001281 670 LDIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQ-NLQAL 748 (1108)
Q Consensus 670 L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~-~L~~L 748 (1108)
|++++|.....+|..++.+++|++|+... +.+....+..+..+. +|+.|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~------------------------------N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDG------------------------------NRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCS------------------------------SCCEEECCGGGGCCCTTCCEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcC------------------------------CcccCcCCHHHhhhhhcCcEE
Confidence 99999984447888888888888774211 112222233455555 78888
Q ss_pred EEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCC-CccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCc
Q 001281 749 SLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGEN-FPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSL 827 (1108)
Q Consensus 749 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 827 (1108)
++++|......+.. +..+. |+.|++++|.... .|..+. .+++|+.|+|++|.+...+|.+..+++|
T Consensus 180 ~L~~N~l~~~~~~~----------~~~l~-L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~l~~L 246 (313)
T 1ogq_A 180 TISRNRLTGKIPPT----------FANLN-LAFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFDLGKVGLSKNL 246 (313)
T ss_dssp ECCSSEEEEECCGG----------GGGCC-CSEEECCSSEEEECCGGGCC--TTSCCSEEECCSSEECCBGGGCCCCTTC
T ss_pred ECcCCeeeccCChH----------HhCCc-ccEEECcCCcccCcCCHHHh--cCCCCCEEECCCCceeeecCcccccCCC
Confidence 88777543222211 22233 7888887776553 344444 3577888888888777666667777888
Q ss_pred cEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCC
Q 001281 828 KQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKF 896 (1108)
Q Consensus 828 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 896 (1108)
++|++++|.....++..+ ..+++|+.|++.+..--..+ +. ...+++|+.|++.+++.+
T Consensus 247 ~~L~Ls~N~l~~~~p~~l------~~l~~L~~L~Ls~N~l~~~i----p~-~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 247 NGLDLRNNRIYGTLPQGL------TQLKFLHSLNVSFNNLCGEI----PQ-GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CEEECCSSCCEECCCGGG------GGCTTCCEEECCSSEEEEEC----CC-STTGGGSCGGGTCSSSEE
T ss_pred CEEECcCCcccCcCChHH------hcCcCCCEEECcCCcccccC----CC-CccccccChHHhcCCCCc
Confidence 888887776444444322 23555555555553211111 11 144555555555555444
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.2e-17 Score=199.15 Aligned_cols=176 Identities=16% Similarity=0.112 Sum_probs=92.9
Q ss_pred CCcccEEeecCCCCCCCCCCCCCCCccEEEEccCCCccccCCCCCcccEEEEeecCCccccCCCCCCCccEEEEecCCcc
Q 001281 882 FSSLRELSILKCPKFSGKLPELLPSLEILVISKCADLVVPFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQ 961 (1108)
Q Consensus 882 ~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~ 961 (1108)
+++|+.|++++| +++ .+|..+++|++|++++|..... ...+++|+.|++++|.....+ ..+++|+.|++++|.+.
T Consensus 120 l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 120 PSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS
T ss_pred CCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCC
Confidence 445555555553 343 3455555555555555543221 122345555555555433222 34455666666655544
Q ss_pred cccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeec
Q 001281 962 IYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEE 1041 (1108)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 1041 (1108)
.+.. .+++|+.|++++| .++.++ ..+++|++|++++|. +..+| ..+++|++|+++
T Consensus 195 ~l~~------------~~~~L~~L~L~~N-~l~~l~-~~~~~L~~L~Ls~N~-------L~~lp---~~l~~L~~L~Ls- 249 (622)
T 3g06_A 195 SLPT------------LPSELYKLWAYNN-RLTSLP-ALPSGLKELIVSGNR-------LTSLP---VLPSELKELMVS- 249 (622)
T ss_dssp CCCC------------CCTTCCEEECCSS-CCSSCC-CCCTTCCEEECCSSC-------CSCCC---CCCTTCCEEECC-
T ss_pred CCCC------------ccchhhEEECcCC-cccccC-CCCCCCCEEEccCCc-------cCcCC---CCCCcCcEEECC-
Confidence 3211 2345666666554 333333 234566666666665 44454 334566666665
Q ss_pred cCccccccccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1042 NCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1042 ~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
.|.++.+|. .+++|+.|++++| .++.+|. .+..+++|+.|++++|+
T Consensus 250 -~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~-~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 250 -GNRLTSLPM---LPSGLLSLSVYRN-QLTRLPE-SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -SSCCSCCCC---CCTTCCEEECCSS-CCCSCCG-GGGGSCTTCEEECCSCC
T ss_pred -CCCCCcCCc---ccccCcEEeCCCC-CCCcCCH-HHhhccccCEEEecCCC
Confidence 456666665 3566666666654 5666665 45666666666666664
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=8.5e-18 Score=200.27 Aligned_cols=79 Identities=27% Similarity=0.298 Sum_probs=68.3
Q ss_pred CcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecC
Q 001281 595 KKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEG 674 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 674 (1108)
..+++|++++|.++.+|..+. ++|++|++++|.|+.+|. .+++|++|++++|. ++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 458999999999999998776 799999999999999987 67899999999975 777887 789999999999
Q ss_pred CCCCCcCCc
Q 001281 675 ANSLEGMPY 683 (1108)
Q Consensus 675 ~~~~~~lp~ 683 (1108)
|. +..+|.
T Consensus 111 N~-l~~l~~ 118 (622)
T 3g06_A 111 NP-LTHLPA 118 (622)
T ss_dssp CC-CCCCCC
T ss_pred Cc-CCCCCC
Confidence 87 666664
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=2.8e-18 Score=190.06 Aligned_cols=218 Identities=19% Similarity=0.290 Sum_probs=161.5
Q ss_pred cCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCccCCCCCCCCccC
Q 001281 616 ELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 616 ~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
...++++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++|++|++++|. +..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 3579999999999999999999999999999999976 55999999999999999999998 667887777777766664
Q ss_pred ceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCC
Q 001281 696 NFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQP 775 (1108)
Q Consensus 696 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 775 (1108)
. ++|......+.. .........+..
T Consensus 157 L------------------------------------------------------~~n~~~~~~p~~-~~~~~~~~~~~~ 181 (328)
T 4fcg_A 157 I------------------------------------------------------RACPELTELPEP-LASTDASGEHQG 181 (328)
T ss_dssp E------------------------------------------------------EEETTCCCCCSC-SEEEC-CCCEEE
T ss_pred C------------------------------------------------------CCCCCccccChh-Hhhccchhhhcc
Confidence 2 222111111100 000001112445
Q ss_pred CCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCC
Q 001281 776 HTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFK 855 (1108)
Q Consensus 776 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~ 855 (1108)
+++|+.|++++|....+|.++. .+++|+.|+|++|.+.+..+.++.+++|++|++++|.....++..+ ..++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~------~~l~ 253 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF------GGRA 253 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT------TCCC
T ss_pred CCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh------cCCC
Confidence 7899999999999999998877 4689999999999987655678899999999999998777766443 3477
Q ss_pred ccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCCC
Q 001281 856 TLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPEL 903 (1108)
Q Consensus 856 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~ 903 (1108)
+|+.|++.++.....+. ..+..+++|++|++++|+.+ +.+|..
T Consensus 254 ~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~-~~iP~~ 296 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLP----LDIHRLTQLEKLDLRGCVNL-SRLPSL 296 (328)
T ss_dssp CCCEEECTTCTTCCBCC----TTGGGCTTCCEEECTTCTTC-CCCCGG
T ss_pred CCCEEECCCCCchhhcc----hhhhcCCCCCEEeCCCCCch-hhccHH
Confidence 78888877765544433 23566777778887777554 466653
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.5e-18 Score=191.52 Aligned_cols=215 Identities=18% Similarity=0.209 Sum_probs=99.0
Q ss_pred CcccEEEecCccccccCc-chhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 595 KKLRVLSLEGYYVTQLPN-SIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
+.|++|+|++|.++.+|. .|+++++|++|++++|.++.+ |..++++++|++|++++|. +..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEEC
Confidence 345555666555555533 455555566666655555544 4555555566666665543 445554443 45555555
Q ss_pred cCCCCCCcCCc-cCCCCCCCCccCceeeCC----CCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCc
Q 001281 673 EGANSLEGMPY-GMEKLKHLQTLSNFIVGK----DTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQA 747 (1108)
Q Consensus 673 ~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~----~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 747 (1108)
++|. +..++. .+.++++|+.|+...... .....+..+++|+.|. +. .+.+.. .+..+ .++|+.
T Consensus 129 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~----l~----~n~l~~-l~~~~--~~~L~~ 196 (330)
T 1xku_A 129 HENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR----IA----DTNITT-IPQGL--PPSLTE 196 (330)
T ss_dssp CSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE----CC----SSCCCS-CCSSC--CTTCSE
T ss_pred CCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE----CC----CCcccc-CCccc--cccCCE
Confidence 5554 333332 244555555443111100 0011122222222221 00 000000 00001 145566
Q ss_pred eEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCcc-ccccCCcCcceEEEEeCCCCCCCCCCCCCCCC
Q 001281 748 LSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPM-WIGDLSFSKMEVLELQNCQNCTSLPSLSMLGS 826 (1108)
Q Consensus 748 L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 826 (1108)
|++++|......+ ..+..+++|+.|++++|....++. ++. .+++|+.|+|++|.+......+..+++
T Consensus 197 L~l~~n~l~~~~~----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~lp~~l~~l~~ 264 (330)
T 1xku_A 197 LHLDGNKITKVDA----------ASLKGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNNKLVKVPGGLADHKY 264 (330)
T ss_dssp EECTTSCCCEECT----------GGGTTCTTCCEEECCSSCCCEECTTTGG--GSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred EECCCCcCCccCH----------HHhcCCCCCCEEECCCCcCceeChhhcc--CCCCCCEEECCCCcCccCChhhccCCC
Confidence 6665554321111 123445566666666665554443 333 245666666666655433234566666
Q ss_pred ccEEEecCCC
Q 001281 827 LKQLTIKGMT 836 (1108)
Q Consensus 827 L~~L~L~~~~ 836 (1108)
|++|++++|.
T Consensus 265 L~~L~l~~N~ 274 (330)
T 1xku_A 265 IQVVYLHNNN 274 (330)
T ss_dssp CCEEECCSSC
T ss_pred cCEEECCCCc
Confidence 6666666654
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=7.3e-20 Score=222.41 Aligned_cols=425 Identities=13% Similarity=0.111 Sum_probs=207.6
Q ss_pred hhhccCCCcccEEEecCccc----cccCcc------------hhcCCCCcEEEeeCccccc-cchhhhcC--ccCcEeee
Q 001281 588 SDMLPKFKKLRVLSLEGYYV----TQLPNS------------IKELKLLRYLNVAGTQIRS-LPESTSSL--MHLRVLIL 648 (1108)
Q Consensus 588 ~~~~~~l~~Lr~L~L~~~~i----~~lp~~------------i~~l~~L~~L~Ls~~~i~~-lp~~i~~L--~~L~~L~l 648 (1108)
+..+.++++|+.|+|+++.. ..+|.. ...+++|++|+|++|.++. .+..+.++ .+|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 34456677788888877542 122322 2378999999999998873 35566664 45999999
Q ss_pred cCCcCCc--ccchhccCCCCccEEeecCCCCCCcC-----CccCCCCCCCCccCceeeCCCCCCCccccccccccCceeE
Q 001281 649 RDCSRLT--RLPSKMWNLINLRHLDIEGANSLEGM-----PYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELC 721 (1108)
Q Consensus 649 ~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~~~~l-----p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~ 721 (1108)
++|..+. .++..+.++++|++|++++|. +... +..+..+++|+.|+....
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n---------------------- 202 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMT---------------------- 202 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTC----------------------
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeecc----------------------
Confidence 9986332 233444588999999999986 3221 111223334444321000
Q ss_pred ecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCC----CCccccc
Q 001281 722 ISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGE----NFPMWIG 797 (1108)
Q Consensus 722 i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----~~p~~~~ 797 (1108)
.+. .......+..+..+++|+.|+++.|.... ....+..+++|++|.+.++... ..+..+.
T Consensus 203 --~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 203 --EFA--KISPKDLETIARNCRSLVSVKVGDFEILE-----------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp --CCS--SCCHHHHHHHHHHCTTCCEEECSSCBGGG-----------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred --CCC--ccCHHHHHHHHhhCCCCcEEeccCccHHH-----------HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 000 00012333344556777888777654211 1112334567777777654322 1222222
Q ss_pred cCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccC
Q 001281 798 DLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKEN 876 (1108)
Q Consensus 798 ~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 876 (1108)
.+++|+.|+++++.. ..+| .+..+++|++|++++|. +.... +. ..+..+++|+.|.+.+.. ..-. ..
T Consensus 268 --~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~-l~~~~--~~--~~~~~~~~L~~L~L~~~~--~~~~--l~ 335 (592)
T 3ogk_B 268 --FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYAL-LETED--HC--TLIQKCPNLEVLETRNVI--GDRG--LE 335 (592)
T ss_dssp --CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCC-CCHHH--HH--HHHTTCTTCCEEEEEGGG--HHHH--HH
T ss_pred --ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCc-CCHHH--HH--HHHHhCcCCCEEeccCcc--CHHH--HH
Confidence 346777777766532 2233 34566777777777765 21111 00 012346666666665211 0000 11
Q ss_pred CccccCCcccEEeecC----------CCCCCCCC----CCCCCCccEEEEccCCCcccc---CC-CCCcccEEEEeecCC
Q 001281 877 GLLAGFSSLRELSILK----------CPKFSGKL----PELLPSLEILVISKCADLVVP---FS-SFPMLCRLEIEECKG 938 (1108)
Q Consensus 877 ~~~~~~~~L~~L~l~~----------c~~l~~~~----p~~l~~L~~L~l~~~~~l~~~---~~-~l~~L~~L~l~~c~~ 938 (1108)
.....+++|++|++.+ |+.+++.- ...+++|++|++..+...... +. .+++|+.|++++|..
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 1123456666666664 54443210 112445555555322211110 11 134444444443210
Q ss_pred ccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCC-Ccccc----cCCCCCccEEEEeccC
Q 001281 939 ITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLE-FGKFL----KQGFQQVETLRIGNSE 1013 (1108)
Q Consensus 939 l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~----~~~l~~L~~L~l~~~~ 1013 (1108)
.|.+... +....-+..+..+++|+.|+++.|.. ++... ...+++|++|+|++|.
T Consensus 416 ------------------~n~l~~~---p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 416 ------------------EERITDL---PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp ------------------CSCCSSC---CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred ------------------CccccCc---hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 1111110 00000000012456666666665442 22211 1346777777777776
Q ss_pred CccccccccCCcccCCCCCCCcEeEeeccCccccc--cccccccCCCcceEecccccCCCCCccc-CCCCCCCccEEeee
Q 001281 1014 QIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVS--FSEVIFLMNNLRYLKIENSRALKSLPQE-VMGNNAQLEKLFIK 1090 (1108)
Q Consensus 1014 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~l~~l~~L~~L~l~ 1090 (1108)
. . -..++..+.++++|++|+|+ +|+ ++. ++.....+++|++|+|++|+ ++..... ....+|.|....+.
T Consensus 475 l-~----~~~~~~~~~~~~~L~~L~l~-~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 475 E-S----DEGLMEFSRGCPNLQKLEMR-GCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp S-S----HHHHHHHHTCCTTCCEEEEE-SCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred C-C----HHHHHHHHhcCcccCeeecc-CCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 2 0 01234455667777777777 655 432 33333356777777777775 4432211 11234555554444
Q ss_pred c
Q 001281 1091 Y 1091 (1108)
Q Consensus 1091 ~ 1091 (1108)
.
T Consensus 547 ~ 547 (592)
T 3ogk_B 547 S 547 (592)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=6.6e-20 Score=222.97 Aligned_cols=418 Identities=15% Similarity=0.130 Sum_probs=217.6
Q ss_pred ccCCCcccEEEecCcc-cccc---C------------cchhcCCCCcEEEeeCccccc-cchhhh-cCccCcEeeecCCc
Q 001281 591 LPKFKKLRVLSLEGYY-VTQL---P------------NSIKELKLLRYLNVAGTQIRS-LPESTS-SLMHLRVLILRDCS 652 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~-i~~l---p------------~~i~~l~~L~~L~Ls~~~i~~-lp~~i~-~L~~L~~L~l~~~~ 652 (1108)
+.++++|+.|+++++. +..+ | .....+++|++|+|++|.++. .+..+. .+++|++|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4455667777777664 2111 1 123467788888888887763 344454 67888888888875
Q ss_pred CCcc--cchhccCCCCccEEeecCCCCCCcCC-ccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCC
Q 001281 653 RLTR--LPSKMWNLINLRHLDIEGANSLEGMP-YGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVN 729 (1108)
Q Consensus 653 ~~~~--lp~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~ 729 (1108)
.+.. ++..+.++++|++|++++|. +.... ..+.
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~------------------------------------------- 177 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLS------------------------------------------- 177 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGG-------------------------------------------
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHH-------------------------------------------
Confidence 5544 55555578888888888876 32211 0000
Q ss_pred ChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecC-CCCCccccccCCcCcceEEE
Q 001281 730 DLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYS-GENFPMWIGDLSFSKMEVLE 808 (1108)
Q Consensus 730 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~ 808 (1108)
.....+++|+.|+++++. ....... .......+++|++|++.++. ...+|..+. .+++|+.|+
T Consensus 178 -------~~~~~~~~L~~L~l~~~~-~~~~~~~------l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~--~~~~L~~L~ 241 (594)
T 2p1m_B 178 -------HFPDTYTSLVSLNISCLA-SEVSFSA------LERLVTRCPNLKSLKLNRAVPLEKLATLLQ--RAPQLEELG 241 (594)
T ss_dssp -------GSCTTCCCCCEEECTTCC-SCCCHHH------HHHHHHHCTTCCEEECCTTSCHHHHHHHHH--HCTTCSEEE
T ss_pred -------HHhhcCCcCcEEEecccC-CcCCHHH------HHHHHHhCCCCcEEecCCCCcHHHHHHHHh--cCCcceEcc
Confidence 001123455555555443 0000000 00001225788888888762 233455554 357899998
Q ss_pred EeCCCCC-------CCCCCCCCCCCccEE-EecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccc
Q 001281 809 LQNCQNC-------TSLPSLSMLGSLKQL-TIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLA 880 (1108)
Q Consensus 809 L~~~~~~-------~~l~~l~~l~~L~~L-~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 880 (1108)
++.|... +..+.+.++++|+.| .+.+... ..++ .....+++|+.|++.++. +.... ......
T Consensus 242 l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~------~~~~~~~~L~~L~L~~~~-l~~~~--l~~~~~ 311 (594)
T 2p1m_B 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLP------AVYSVCSRLTTLNLSYAT-VQSYD--LVKLLC 311 (594)
T ss_dssp CSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGG------GGHHHHTTCCEEECTTCC-CCHHH--HHHHHT
T ss_pred cccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHH------HHHHhhCCCCEEEccCCC-CCHHH--HHHHHh
Confidence 8776421 111135667777777 3322210 0111 111246788888888765 32211 111245
Q ss_pred cCCcccEEeecCCCCCCC-CC---CCCCCCccEEEEccC--------CCccc----cC-CCCCcccEEEEeecCCcccc-
Q 001281 881 GFSSLRELSILKCPKFSG-KL---PELLPSLEILVISKC--------ADLVV----PF-SSFPMLCRLEIEECKGITCS- 942 (1108)
Q Consensus 881 ~~~~L~~L~l~~c~~l~~-~~---p~~l~~L~~L~l~~~--------~~l~~----~~-~~l~~L~~L~l~~c~~l~~~- 942 (1108)
.+++|++|++.+| +.. .+ ...+++|++|++.+| ..+.. .+ ..+++|++|.+..+. +...
T Consensus 312 ~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l~~~~ 388 (594)
T 2p1m_B 312 QCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-MTNAA 388 (594)
T ss_dssp TCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-CCHHH
T ss_pred cCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-cCHHH
Confidence 6788888888886 221 11 124678888888443 22221 01 136788888554433 3321
Q ss_pred --CC-CCCCCccEEEEecCC---cccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc---c-CCCCCccEEEEecc
Q 001281 943 --TP-IDCKLIESMTISNSS---LQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL---K-QGFQQVETLRIGNS 1012 (1108)
Q Consensus 943 --~~-~~l~~L~~L~l~~n~---~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~-~~l~~L~~L~l~~~ 1012 (1108)
.+ ..+++|+.|+++.+. |..+...+....-+..+..+++|+.|++++ .++... + ..+++|+.|++++|
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC
Confidence 11 246788888887321 111111100000000123567788888865 444322 1 23677888888887
Q ss_pred CCccccccccCCcccC-CCCCCCcEeEeeccCccccccc--cccccCCCcceEecccccCCCCCcccCC-CCCCCccEEe
Q 001281 1013 EQIKSWLQFDKPEQGL-HVLSSPEDVSIEENCMSLVSFS--EVIFLMNNLRYLKIENSRALKSLPQEVM-GNNAQLEKLF 1088 (1108)
Q Consensus 1013 ~~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~c~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~l~~L~~L~ 1088 (1108)
.. ....+..+ ..+++|++|+|+ +|+. +... .....+++|++|++++|+. +.-....+ ..+|.|+...
T Consensus 467 ~i------~~~~~~~l~~~~~~L~~L~L~-~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 467 GD------SDLGMHHVLSGCDSLRKLEIR-DCPF-GDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp CS------SHHHHHHHHHHCTTCCEEEEE-SCSC-CHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEE
T ss_pred CC------cHHHHHHHHhcCCCcCEEECc-CCCC-cHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEE
Confidence 73 11122222 557788888887 6654 3221 2333477888888888754 21100011 3356665555
Q ss_pred eecC
Q 001281 1089 IKYC 1092 (1108)
Q Consensus 1089 l~~c 1092 (1108)
+...
T Consensus 538 ~~~~ 541 (594)
T 2p1m_B 538 IDER 541 (594)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 5543
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.3e-16 Score=185.80 Aligned_cols=86 Identities=27% Similarity=0.368 Sum_probs=48.0
Q ss_pred CcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCcccch-hccCCCCccEEe
Q 001281 595 KKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLD 671 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 671 (1108)
++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.++ ..+.++++|++|+|++|. +..+|. .+.++++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence 3556666666666554 455566666666666666665553 445566666666666643 333433 355566666666
Q ss_pred ecCCCCCCcCC
Q 001281 672 IEGANSLEGMP 682 (1108)
Q Consensus 672 l~~~~~~~~lp 682 (1108)
+++|. +..+|
T Consensus 154 L~~N~-l~~~~ 163 (452)
T 3zyi_A 154 LRNNP-IESIP 163 (452)
T ss_dssp CCSCC-CCEEC
T ss_pred CCCCC-cceeC
Confidence 66655 33433
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=183.65 Aligned_cols=80 Identities=28% Similarity=0.387 Sum_probs=40.9
Q ss_pred cccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCcccch-hccCCCCccEEee
Q 001281 596 KLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLDI 672 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l 672 (1108)
++++|+|++|.++.+ +..|.++++|++|+|++|.|+.++ ..+.++++|++|+|++|. +..+|. .+..+++|++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeC
Confidence 455555555555544 244555555555555555555443 345555555555555543 333332 3455555555555
Q ss_pred cCCC
Q 001281 673 EGAN 676 (1108)
Q Consensus 673 ~~~~ 676 (1108)
++|.
T Consensus 144 ~~N~ 147 (440)
T 3zyj_A 144 RNNP 147 (440)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 5554
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=182.30 Aligned_cols=250 Identities=20% Similarity=0.150 Sum_probs=146.9
Q ss_pred CcccEEEecCccccccCc-chhcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCcccchh-ccCCCCccEEe
Q 001281 595 KKLRVLSLEGYYVTQLPN-SIKELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPSK-MWNLINLRHLD 671 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~ 671 (1108)
++|++|++++|.++.+|. .+.++++|++|++++|.++.++ ..++++++|++|++++|. +..+|.. ++++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEE
Confidence 477888888888877754 6778888888888888887664 457888888888888764 5556654 77788888888
Q ss_pred ecCCCCCCcCCc--cCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceE
Q 001281 672 IEGANSLEGMPY--GMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALS 749 (1108)
Q Consensus 672 l~~~~~~~~lp~--~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 749 (1108)
+++|. +..+|. .++.+++|++|+..... .+....+..+..+++|+.|+
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~-----------------------------~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMD-----------------------------TFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESS-----------------------------SCCEECTTTTTTCCEEEEEE
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCc-----------------------------cccccCHHHccCCCCCCEEE
Confidence 88776 566665 45566666655421110 00111122344556666777
Q ss_pred EEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC----CCCCCC
Q 001281 750 LQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP----SLSMLG 825 (1108)
Q Consensus 750 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~----~l~~l~ 825 (1108)
+++|...... ...+..+++|++|++++|....+|..+.. .+++|+.|++++|.+.+..+ .....+
T Consensus 181 l~~n~l~~~~----------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 181 IDASDLQSYE----------PKSLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp EEETTCCEEC----------TTTTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred CCCCCcCccC----------HHHHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCccccccccccccccccc
Confidence 7666542211 12244556666666666666555544332 24566777777666543221 122233
Q ss_pred CccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC---
Q 001281 826 SLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE--- 902 (1108)
Q Consensus 826 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~--- 902 (1108)
.++.+++.++... +. .+.. .+..+..+++|+.|++++| +++ .+|.
T Consensus 250 ~l~~l~L~~~~l~-------------------------~~-~l~~----l~~~l~~l~~L~~L~Ls~N-~l~-~i~~~~~ 297 (353)
T 2z80_A 250 LIKKFTFRNVKIT-------------------------DE-SLFQ----VMKLLNQISGLLELEFSRN-QLK-SVPDGIF 297 (353)
T ss_dssp CCCEEEEESCBCC-------------------------HH-HHHH----HHHHHHTCTTCCEEECCSS-CCC-CCCTTTT
T ss_pred hhhcccccccccc-------------------------Cc-chhh----hHHHHhcccCCCEEECCCC-CCC-ccCHHHH
Confidence 4444444433210 00 0000 0112456788888888885 665 5554
Q ss_pred -CCCCccEEEEccCCCc
Q 001281 903 -LLPSLEILVISKCADL 918 (1108)
Q Consensus 903 -~l~~L~~L~l~~~~~l 918 (1108)
.+++|++|++++|+..
T Consensus 298 ~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred hcCCCCCEEEeeCCCcc
Confidence 4678889999888754
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=2.8e-18 Score=189.55 Aligned_cols=258 Identities=14% Similarity=0.132 Sum_probs=170.2
Q ss_pred hhhhhhccCCCcccEEEecCccccccC-cchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccC
Q 001281 585 VLLSDMLPKFKKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWN 663 (1108)
Q Consensus 585 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~ 663 (1108)
..+...+..+++|++|+|++|.++.++ ..+..+++|++|++++|.++.+++ +..+++|++|++++|. +..+| .
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~ 97 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----V 97 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----E
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----C
Confidence 344556677789999999999998774 678999999999999999987765 8899999999999975 55554 3
Q ss_pred CCCccEEeecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCC
Q 001281 664 LINLRHLDIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQ 743 (1108)
Q Consensus 664 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 743 (1108)
.++|++|++++|. +..++.. .+++|++|... .+.+....+..+..++
T Consensus 98 ~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~------------------------------~N~l~~~~~~~~~~l~ 144 (317)
T 3o53_A 98 GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLA------------------------------NNKITMLRDLDEGCRS 144 (317)
T ss_dssp CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECC------------------------------SSCCCSGGGBCTGGGS
T ss_pred CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECC------------------------------CCCCCCccchhhhccC
Confidence 4899999999887 5555432 24445544311 1122222233445566
Q ss_pred CCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCC
Q 001281 744 NLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSM 823 (1108)
Q Consensus 744 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 823 (1108)
+|+.|++++|......+.. ....+++|+.|++++|.+..+|... .+++|+.|+|++|.+....+.+..
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~ 212 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAE---------LAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQS 212 (317)
T ss_dssp SEEEEECTTSCCCEEEGGG---------GGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGG
T ss_pred CCCEEECCCCCCCcccHHH---------HhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcc
Confidence 7777777766543221111 0123567888888887777665544 257788888888877655556777
Q ss_pred CCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCCC
Q 001281 824 LGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPEL 903 (1108)
Q Consensus 824 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~ 903 (1108)
+++|+.|++++|. +..++..+ ..+++|+.|++.+.+-... .....+..+++|+.|++.+|+.+++..|..
T Consensus 213 l~~L~~L~L~~N~-l~~l~~~~------~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 213 AAGVTWISLRNNK-LVLIEKAL------RFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp GTTCSEEECTTSC-CCEECTTC------CCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCcccEEECcCCc-ccchhhHh------hcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECCCchhccCCchhc
Confidence 8888888888775 44555332 3467788888777543201 112235677888888888777776655543
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=4.1e-20 Score=217.08 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=23.3
Q ss_pred CCCCcEEEEcccCCCc----ccc--cCCCCCccEEEEeccCC
Q 001281 979 KSLPTSVTISNVLEFG----KFL--KQGFQQVETLRIGNSEQ 1014 (1108)
Q Consensus 979 ~~~L~~L~l~~c~~l~----~~~--~~~l~~L~~L~l~~~~~ 1014 (1108)
.++|+.|++++|..-. .++ +..+++|++|++++|+.
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 5577777777764322 233 34578888888888873
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=5.1e-17 Score=178.86 Aligned_cols=86 Identities=23% Similarity=0.266 Sum_probs=40.2
Q ss_pred hccCCCcccEEEecCcccccc---CcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccc--hhccCC
Q 001281 590 MLPKFKKLRVLSLEGYYVTQL---PNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLP--SKMWNL 664 (1108)
Q Consensus 590 ~~~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~L 664 (1108)
.|.++++|++|+|++|.++.+ |..+..+++|++|++++|.+..+|..+.++++|++|++++|. +..+| ..+.++
T Consensus 47 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 125 (306)
T 2z66_A 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 125 (306)
T ss_dssp TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTC
T ss_pred HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhc
Confidence 344445555555555544432 334444455555555555555444444455555555555432 22232 234445
Q ss_pred CCccEEeecCCC
Q 001281 665 INLRHLDIEGAN 676 (1108)
Q Consensus 665 ~~L~~L~l~~~~ 676 (1108)
++|++|++++|.
T Consensus 126 ~~L~~L~l~~n~ 137 (306)
T 2z66_A 126 RNLIYLDISHTH 137 (306)
T ss_dssp TTCCEEECTTSC
T ss_pred cCCCEEECCCCc
Confidence 555555555444
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=4.9e-17 Score=182.93 Aligned_cols=248 Identities=16% Similarity=0.133 Sum_probs=146.6
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchh-hhcC
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPES-TSSL 640 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L 640 (1108)
++++.|.+.++.. ..+++..|.++++|++|+|++|.++.+ |..+.++++|++|++++|.++.+|.. ++++
T Consensus 52 ~~L~~L~l~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 123 (353)
T 2z80_A 52 EAVKSLDLSNNRI--------TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123 (353)
T ss_dssp TTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTC
T ss_pred ccCcEEECCCCcC--------cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCC
Confidence 4677776655443 233444677788888888888888776 45678888888888888888887765 7788
Q ss_pred ccCcEeeecCCcCCcccch--hccCCCCccEEeecCCCCCCcCC-ccCCCCCCCCccCceeeC--CCCCCCccccccccc
Q 001281 641 MHLRVLILRDCSRLTRLPS--KMWNLINLRHLDIEGANSLEGMP-YGMEKLKHLQTLSNFIVG--KDTGSGLKDLKNLKF 715 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~~--~~~~~~l~~l~~L~~ 715 (1108)
++|++|++++|. +..+|. .+.++++|++|++++|..+..++ ..++.+++|+.|+..... ...+..+..+++|+.
T Consensus 124 ~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 124 SSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp TTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred ccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 888888888864 556665 67788888888888875455553 457777777777532221 111233444444444
Q ss_pred cCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCC-----
Q 001281 716 LHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGE----- 790 (1108)
Q Consensus 716 L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----- 790 (1108)
|. +. .+.+.......+..+++|+.|++++|......... +........++.+++.++...
T Consensus 203 L~----l~----~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 203 LI----LH----MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE-------LSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp EE----EE----CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------CCCCCCEEEEESCBCCHHHHH
T ss_pred ec----CC----CCccccchhhhhhhcccccEEECCCCccccccccc-------cccccccchhhccccccccccCcchh
Confidence 42 11 11122222223334567777777766543221111 111223445666666655433
Q ss_pred CCccccccCCcCcceEEEEeCCCCCCCCCC-CCCCCCccEEEecCCC
Q 001281 791 NFPMWIGDLSFSKMEVLELQNCQNCTSLPS-LSMLGSLKQLTIKGMT 836 (1108)
Q Consensus 791 ~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 836 (1108)
.+|.++. .+++|+.|+|++|.+....+. +..+++|++|++++|+
T Consensus 268 ~l~~~l~--~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 268 QVMKLLN--QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHH--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHHHHh--cccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 2454444 346777777777766532223 4667777777777765
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=9.2e-17 Score=176.82 Aligned_cols=99 Identities=24% Similarity=0.293 Sum_probs=77.8
Q ss_pred CcccEEEecCccccccCcc-hhcCCCCcEEEeeCcccccc---chhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 595 KKLRVLSLEGYYVTQLPNS-IKELKLLRYLNVAGTQIRSL---PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
++|++|+|++|.++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++|. +..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 5788999999998888764 68889999999999988755 6777888999999999864 66788888889999999
Q ss_pred eecCCCCCCcCCc--cCCCCCCCCccC
Q 001281 671 DIEGANSLEGMPY--GMEKLKHLQTLS 695 (1108)
Q Consensus 671 ~l~~~~~~~~lp~--~i~~L~~L~~L~ 695 (1108)
++++|. +..++. .+..+++|+.|+
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEEE
T ss_pred ECCCCc-ccccccchhhhhccCCCEEE
Confidence 998887 555553 455666666553
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=8.3e-19 Score=213.27 Aligned_cols=233 Identities=17% Similarity=0.142 Sum_probs=132.6
Q ss_pred hhhccCCCcccEEEecCcccccc-Ccchh-cCCCCcEEEeeCc-cccc--cchhhhcCccCcEeeecCCcCCcc----cc
Q 001281 588 SDMLPKFKKLRVLSLEGYYVTQL-PNSIK-ELKLLRYLNVAGT-QIRS--LPESTSSLMHLRVLILRDCSRLTR----LP 658 (1108)
Q Consensus 588 ~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~-~l~~L~~L~Ls~~-~i~~--lp~~i~~L~~L~~L~l~~~~~~~~----lp 658 (1108)
...+..+++|+.|+|++|.++.. +..+. .+++|++|++++| .++. ++..+.++++|++|++++|..... ++
T Consensus 98 ~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 98 EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 34456778999999999987643 45554 6889999999988 5654 566667899999999998863222 33
Q ss_pred hhccCCCCccEEeecCCCCCCcCCc-c----CCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhh
Q 001281 659 SKMWNLINLRHLDIEGANSLEGMPY-G----MEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLRE 733 (1108)
Q Consensus 659 ~~i~~L~~L~~L~l~~~~~~~~lp~-~----i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~ 733 (1108)
.....+++|++|++++|. ..++. . +.++++|+.|+ +. .......
T Consensus 178 ~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~--------------------------L~---~~~~~~~ 226 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLK--------------------------LN---RAVPLEK 226 (594)
T ss_dssp GSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEE--------------------------CC---TTSCHHH
T ss_pred HHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEe--------------------------cC---CCCcHHH
Confidence 333467799999998875 11211 1 12233343332 11 1111222
Q ss_pred hhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeE-EEeecCCCCCccccccCCcCcceEEEEeCC
Q 001281 734 AGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKL-AITSYSGENFPMWIGDLSFSKMEVLELQNC 812 (1108)
Q Consensus 734 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L-~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~ 812 (1108)
.+..+..+++|+.|++..+... ..... .......+..+++|+.| .+.+.....+|..+. .+++|+.|+|++|
T Consensus 227 -l~~~~~~~~~L~~L~l~~~~~~-~~~~~---~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 227 -LATLLQRAPQLEELGTGGYTAE-VRPDV---YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYA 299 (594)
T ss_dssp -HHHHHHHCTTCSEEECSBCCCC-CCHHH---HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTC
T ss_pred -HHHHHhcCCcceEcccccccCc-cchhh---HHHHHHHHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCC
Confidence 3444556677888876554321 01111 11122234566777777 333333333444333 3578999999888
Q ss_pred CCCCC-CC-CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEeccc
Q 001281 813 QNCTS-LP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFEN 864 (1108)
Q Consensus 813 ~~~~~-l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~ 864 (1108)
.+... ++ .+..+++|+.|++.+|. ... .+. .....+++|+.|++.+
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~--~l~--~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDYI--EDA--GLE--VLASTCKDLRELRVFP 347 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGG--HHH--HHH--HHHHHCTTCCEEEEEC
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCcc--CHH--HHH--HHHHhCCCCCEEEEec
Confidence 74321 11 24577888888888762 110 000 0112467777777744
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=1.3e-15 Score=176.81 Aligned_cols=236 Identities=15% Similarity=0.213 Sum_probs=143.3
Q ss_pred CCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCcc
Q 001281 779 LKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTL 857 (1108)
Q Consensus 779 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 857 (1108)
...++..+.....+|..+. ++++.|+|++|.+....+ .+..+++|++|+|++|.. ..++.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~-------------- 105 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEI-------------- 105 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC-CEECG--------------
T ss_pred CCEEEeCCCCcCcCCCCCC----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC-CccCh--------------
Confidence 4456666667777887664 578889999888765443 578888888888888752 22221
Q ss_pred ceEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCC----CCCCccEEEEccCCCcc---ccCCCCCcccE
Q 001281 858 ETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPE----LLPSLEILVISKCADLV---VPFSSFPMLCR 930 (1108)
Q Consensus 858 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----~l~~L~~L~l~~~~~l~---~~~~~l~~L~~ 930 (1108)
..+..+++|++|++++| +++ .+|. .+++|++|++++|.... ..+..+++|++
T Consensus 106 -------------------~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 106 -------------------GAFNGLANLNTLELFDN-RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp -------------------GGGTTCSSCCEEECCSS-CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred -------------------hhccCCccCCEEECCCC-cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 12344556666666663 443 2221 24455555555554332 13445667777
Q ss_pred EEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc-cCCCCCccEEEE
Q 001281 931 LEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL-KQGFQQVETLRI 1009 (1108)
Q Consensus 931 L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~L~~L~l 1009 (1108)
|++++|..+... .+..|..+++|++|++++| .++.++ +..+++|++|++
T Consensus 165 L~l~~~~~l~~i-----------------------------~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 165 LDLGELKRLSYI-----------------------------SEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDL 214 (440)
T ss_dssp EECCCCTTCCEE-----------------------------CTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEEC
T ss_pred eCCCCCCCccee-----------------------------CcchhhcccccCeecCCCC-cCccccccCCCcccCEEEC
Confidence 777665543321 1122334444555555443 222332 455667777777
Q ss_pred eccCCccccccccCCcccCCCCCCCcEeEeeccCcccccccc-ccccCCCcceEecccccCCCCCcccCCCCCCCccEEe
Q 001281 1010 GNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSE-VIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLF 1088 (1108)
Q Consensus 1010 ~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~ 1088 (1108)
++|.. ....|..|.++++|++|+++ .+.++.++. .+..+++|+.|+|++| .++.+|...+..+++|+.|+
T Consensus 215 s~N~l------~~~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 215 SGNHL------SAIRPGSFQGLMHLQKLWMI--QSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp TTSCC------CEECTTTTTTCTTCCEEECT--TCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEE
T ss_pred CCCcc------CccChhhhccCccCCEEECC--CCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEE
Confidence 77763 22346677778888888886 566776655 3446788888888774 67777776777778888888
Q ss_pred eecCc
Q 001281 1089 IKYCD 1093 (1108)
Q Consensus 1089 l~~c~ 1093 (1108)
++++|
T Consensus 286 L~~Np 290 (440)
T 3zyj_A 286 LHHNP 290 (440)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 88765
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.1e-19 Score=213.38 Aligned_cols=362 Identities=16% Similarity=0.159 Sum_probs=182.4
Q ss_pred hhccCCCcccEEEecCcccc-----ccCcchhcCCCCcEEEeeCcccccc-chhh-hcCc----cCcEeeecCCcCCc--
Q 001281 589 DMLPKFKKLRVLSLEGYYVT-----QLPNSIKELKLLRYLNVAGTQIRSL-PEST-SSLM----HLRVLILRDCSRLT-- 655 (1108)
Q Consensus 589 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~Ls~~~i~~l-p~~i-~~L~----~L~~L~l~~~~~~~-- 655 (1108)
..+..+++|++|+|++|.++ .++..+..+++|++|++++|.+... +..+ ..+. +|++|++++|....
T Consensus 22 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 22 ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 34556667777777777765 3455666667777777777766532 2222 2344 57777777764321
Q ss_pred --ccchhccCCCCccEEeecCCCCCCcC-Ccc-----CCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccC
Q 001281 656 --RLPSKMWNLINLRHLDIEGANSLEGM-PYG-----MEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQN 727 (1108)
Q Consensus 656 --~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~-----i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~ 727 (1108)
.+|..+.++++|++|++++|. +... +.. ....++|++|+.. +..-
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~--------------------------~n~l 154 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLE--------------------------YCSL 154 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT--------------------------TSCC
T ss_pred HHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECC--------------------------CCCC
Confidence 446666677777777777665 3211 111 1112233333210 0000
Q ss_pred CCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCC-CCCCCCCeEEEeecCCCC-----CccccccCCc
Q 001281 728 VNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDML-QPHTNLKKLAITSYSGEN-----FPMWIGDLSF 801 (1108)
Q Consensus 728 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l 801 (1108)
...........+..+++|+.|++++|....... ......+ ...++|++|++++|.... ++.++. .+
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~ 226 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGV------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA--SK 226 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH--HC
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH--hC
Confidence 000111223334455677777776665311000 0011111 124467777777776554 344443 34
Q ss_pred CcceEEEEeCCCCCCCC-----CC-CCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccc-
Q 001281 802 SKMEVLELQNCQNCTSL-----PS-LSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTK- 874 (1108)
Q Consensus 802 ~~L~~L~L~~~~~~~~l-----~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 874 (1108)
++|+.|++++|.+...- +. ...+++|++|++++|. +...+..... ..+..+++|+.|+++++. +......
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~-i~~~~~~~ 303 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLC-RVLRAKESLKELSLAGNE-LGDEGARL 303 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH-HHHHHCTTCCEEECTTCC-CHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHH-HHHhhCCCcceEECCCCC-CchHHHHH
Confidence 67777777777653210 11 2346777777777764 2221000000 112346777777777642 1110000
Q ss_pred -cCCccccCCcccEEeecCCCCCCCC----CCC---CCCCccEEEEccCCCcccc-------CC-CCCcccEEEEeecCC
Q 001281 875 -ENGLLAGFSSLRELSILKCPKFSGK----LPE---LLPSLEILVISKCADLVVP-------FS-SFPMLCRLEIEECKG 938 (1108)
Q Consensus 875 -~~~~~~~~~~L~~L~l~~c~~l~~~----~p~---~l~~L~~L~l~~~~~l~~~-------~~-~l~~L~~L~l~~c~~ 938 (1108)
........++|++|++++|. +++. ++. .+++|++|++++|...... +. ..++|++|++++|..
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 00011233678888888763 4322 222 3477888888887543211 11 156888888888864
Q ss_pred cc------ccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCC
Q 001281 939 IT------CSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLE 992 (1108)
Q Consensus 939 l~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 992 (1108)
.. ...+..+++|+.|++++|.+.......+...- ....+.|+.|.+.++..
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l---~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV---RQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH---TSTTCCCCEEECTTCCC
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh---ccCCcchhheeeccccc
Confidence 32 12344578888888888876654322111000 01345788888776543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1.5e-17 Score=183.81 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=143.3
Q ss_pred cCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCcc
Q 001281 801 FSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLL 879 (1108)
Q Consensus 801 l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 879 (1108)
+++|+.|+|++|.+....| .+..+++|++|++++|......+ +..+++|+.|+++++. +.. +
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~l~~L~~L~Ls~n~-l~~--------l 95 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--------LESLSTLRTLDLNNNY-VQE--------L 95 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--------ETTCTTCCEEECCSSE-EEE--------E
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--------hhhcCCCCEEECcCCc-ccc--------c
Confidence 3566666666666554433 35666667777776665332221 2345666666665532 111 1
Q ss_pred ccCCcccEEeecCCCCCCCCCCCCCCCccEEEEccCCCccc---cCCCCCcccEEEEeecCCcccc--CC-CCCCCccEE
Q 001281 880 AGFSSLRELSILKCPKFSGKLPELLPSLEILVISKCADLVV---PFSSFPMLCRLEIEECKGITCS--TP-IDCKLIESM 953 (1108)
Q Consensus 880 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~---~~~~l~~L~~L~l~~c~~l~~~--~~-~~l~~L~~L 953 (1108)
...++|++|++++| .+++..+..+++|++|++++|..... .+..+++|++|++++|...... .+ ..+++|+.|
T Consensus 96 ~~~~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 96 LVGPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp EECTTCCEEECCSS-CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred cCCCCcCEEECCCC-ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 23478888888875 55544555677888888888775542 3445678888888887644321 22 356778888
Q ss_pred EEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc--cCCCCCccEEEEeccCCccccccccCCcccCCCC
Q 001281 954 TISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL--KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVL 1031 (1108)
Q Consensus 954 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l 1031 (1108)
++++|.+..+.. ...+++|+.|++++|. ++.++ +..+++|++|++++|. +..+|..+..+
T Consensus 175 ~L~~N~l~~~~~----------~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-------l~~l~~~~~~l 236 (317)
T 3o53_A 175 NLQYNFIYDVKG----------QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-------LVLIEKALRFS 236 (317)
T ss_dssp ECTTSCCCEEEC----------CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-------CCEECTTCCCC
T ss_pred ECCCCcCccccc----------ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc-------ccchhhHhhcC
Confidence 888777655411 1136677777777653 33333 4556777777777776 55666667777
Q ss_pred CCCcEeEeeccCcccc--ccccccccCCCcceEecccccCCCCCc
Q 001281 1032 SSPEDVSIEENCMSLV--SFSEVIFLMNNLRYLKIENSRALKSLP 1074 (1108)
Q Consensus 1032 ~~L~~L~l~~~c~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~lp 1074 (1108)
++|+.|+++ .|.+. .+|..+..+++|+.|++++|+.++..+
T Consensus 237 ~~L~~L~l~--~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 237 QNLEHFDLR--GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp TTCCEEECT--TCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred CCCCEEEcc--CCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 777777776 33443 455555567777777777666665443
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=2.4e-16 Score=183.68 Aligned_cols=221 Identities=19% Similarity=0.206 Sum_probs=164.1
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchh-hhcC
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPES-TSSL 640 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L 640 (1108)
++++.|.+.++.. ..+.++.|.++++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|.. +.++
T Consensus 75 ~~l~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 75 SNTRYLNLMENNI--------QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp TTCSEEECCSSCC--------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred CCccEEECcCCcC--------ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 5678887766553 234556788999999999999999877 47889999999999999999988765 7889
Q ss_pred ccCcEeeecCCcCCcccch-hccCCCCccEEeecCCCCCCcCCcc-CCCCCCCCccCceeeCCCCCCCccccccccccCc
Q 001281 641 MHLRVLILRDCSRLTRLPS-KMWNLINLRHLDIEGANSLEGMPYG-MEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHG 718 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~ 718 (1108)
++|++|++++|. +..+|. .+.++++|++|++++|..+..+|.. +..+++|+.|+..... +..+
T Consensus 147 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~------l~~~-------- 211 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN------IKDM-------- 211 (452)
T ss_dssp TTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC------CSSC--------
T ss_pred CCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc------cccc--------
Confidence 999999999975 555554 6889999999999987767777654 6777777776421110 1100
Q ss_pred eeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCcc-ccc
Q 001281 719 ELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPM-WIG 797 (1108)
Q Consensus 719 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~ 797 (1108)
..+..+++|+.|++++|......+ ..+..+++|+.|++++|.+..++. .+.
T Consensus 212 ------------------~~~~~l~~L~~L~Ls~N~l~~~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 212 ------------------PNLTPLVGLEELEMSGNHFPEIRP----------GSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp ------------------CCCTTCTTCCEEECTTSCCSEECG----------GGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ------------------ccccccccccEEECcCCcCcccCc----------ccccCccCCCEEEeCCCcCceECHHHhc
Confidence 124556788888888776543222 235667889999999988776643 343
Q ss_pred cCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCC
Q 001281 798 DLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMT 836 (1108)
Q Consensus 798 ~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 836 (1108)
.+++|+.|+|++|.+....+ .+..+++|+.|+|++|+
T Consensus 264 --~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 --GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 46899999999998865444 37889999999999886
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=9.8e-17 Score=174.49 Aligned_cols=200 Identities=19% Similarity=0.210 Sum_probs=142.0
Q ss_pred CcccEEEecCccccccC-cchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCccc-chhccCCCCccEEe
Q 001281 595 KKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRL-PSKMWNLINLRHLD 671 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~ 671 (1108)
+.|++|+|++|.++.+| ..+..+++|++|++++|.++.+ |..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 57888888888888775 5678888888888888888877 667888888888888887645555 66788888888888
Q ss_pred ecCCCCCCcC-CccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEE
Q 001281 672 IEGANSLEGM-PYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSL 750 (1108)
Q Consensus 672 l~~~~~~~~l-p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 750 (1108)
+++|. +..+ |..+..+++|++|.... +.+.......+..+++|+.|++
T Consensus 112 l~~n~-l~~~~~~~~~~l~~L~~L~l~~------------------------------n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 112 LDRCG-LQELGPGLFRGLAALQYLYLQD------------------------------NALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCS------------------------------SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCc-CCEECHhHhhCCcCCCEEECCC------------------------------CcccccCHhHhccCCCccEEEC
Confidence 88887 4444 44566677777664211 1111111223556677888888
Q ss_pred EecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCC-ccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCcc
Q 001281 751 QWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENF-PMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLK 828 (1108)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 828 (1108)
++|....... ..+..+++|+.|++++|....+ |.++. .+++|+.|++++|.+.+..+ .+..+++|+
T Consensus 161 ~~n~l~~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 161 HGNRISSVPE----------RAFRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp CSSCCCEECT----------TTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred CCCcccccCH----------HHhcCccccCEEECCCCcccccCHhHcc--CcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 7775432111 1255678899999998887766 55565 46899999999998866544 388899999
Q ss_pred EEEecCCCC
Q 001281 829 QLTIKGMTR 837 (1108)
Q Consensus 829 ~L~L~~~~~ 837 (1108)
.|++++|+.
T Consensus 229 ~L~l~~N~~ 237 (285)
T 1ozn_A 229 YLRLNDNPW 237 (285)
T ss_dssp EEECCSSCE
T ss_pred EEeccCCCc
Confidence 999999873
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=3e-16 Score=172.81 Aligned_cols=203 Identities=21% Similarity=0.204 Sum_probs=122.7
Q ss_pred CCCcccEEEecCcccc-ccCcch--hcCCCCcEEEeeCccccccchhhhcC-----ccCcEeeecCCcCCcccchhccCC
Q 001281 593 KFKKLRVLSLEGYYVT-QLPNSI--KELKLLRYLNVAGTQIRSLPESTSSL-----MHLRVLILRDCSRLTRLPSKMWNL 664 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~-~lp~~i--~~l~~L~~L~Ls~~~i~~lp~~i~~L-----~~L~~L~l~~~~~~~~lp~~i~~L 664 (1108)
++++|++|+|++|.++ .+|..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|......|..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4666777777777766 456554 66677777777777776666666665 677777777665433333566677
Q ss_pred CCccEEeecCCCCCCc--CCccC--CCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccC
Q 001281 665 INLRHLDIEGANSLEG--MPYGM--EKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLC 740 (1108)
Q Consensus 665 ~~L~~L~l~~~~~~~~--lp~~i--~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 740 (1108)
++|++|++++|..... +|..+ +.+++|++|+.... ............+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N---------------------------~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA---------------------------GMETPSGVCSALAA 225 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS---------------------------CCCCHHHHHHHHHH
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC---------------------------cCcchHHHHHHHHh
Confidence 7777777776653222 22222 44444444421000 01111122223345
Q ss_pred CCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCC
Q 001281 741 EKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPS 820 (1108)
Q Consensus 741 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 820 (1108)
.+++|+.|++++|......+ ...+..+++|+.|++++|.+..+|.++. ++|+.|+|++|.+.+. |.
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~---------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p~ 291 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAG---------APSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-PS 291 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCC---------CSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-CC
T ss_pred cCCCCCEEECCCCcCCcccc---------hhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-hh
Confidence 56788888887776533221 1123345778888888888777777664 5788888888877554 66
Q ss_pred CCCCCCccEEEecCCC
Q 001281 821 LSMLGSLKQLTIKGMT 836 (1108)
Q Consensus 821 l~~l~~L~~L~L~~~~ 836 (1108)
+..+++|++|++++|.
T Consensus 292 ~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTTSCEEEEEECTTCT
T ss_pred HhhCCCCCEEeccCCC
Confidence 7788888888888775
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=6.5e-17 Score=189.19 Aligned_cols=230 Identities=12% Similarity=0.076 Sum_probs=116.2
Q ss_pred cCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCcc
Q 001281 801 FSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLL 879 (1108)
Q Consensus 801 l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 879 (1108)
+++|+.|+|++|.+....| .++.+++|++|+|++|......+ +..+++|+.|+++++. +..+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------l~~l~~L~~L~Ls~N~-l~~l-------- 95 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--------LESLSTLRTLDLNNNY-VQEL-------- 95 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--------CTTCTTCCEEECCSSE-EEEE--------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--------cccCCCCCEEEecCCc-CCCC--------
Confidence 3477777777777665544 47777777777777766333222 2345566666665531 1111
Q ss_pred ccCCcccEEeecCCCCCCCCCCCCCCCccEEEEccCCCccc---cCCCCCcccEEEEeecCCccc--cCC-CCCCCccEE
Q 001281 880 AGFSSLRELSILKCPKFSGKLPELLPSLEILVISKCADLVV---PFSSFPMLCRLEIEECKGITC--STP-IDCKLIESM 953 (1108)
Q Consensus 880 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~---~~~~l~~L~~L~l~~c~~l~~--~~~-~~l~~L~~L 953 (1108)
...++|+.|++++| .+++..+..+++|+.|++++|..... .+..+++|+.|++++|..... ..+ ..+++|+.|
T Consensus 96 ~~~~~L~~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 96 LVGPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp EECTTCCEEECCSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCCCCcCEEECcCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 12366777777764 45444444556666666666654321 223345555555555542221 111 134444444
Q ss_pred EEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCCCccEEEEeccCCccccccccCCcccCCCCCC
Q 001281 954 TISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSS 1033 (1108)
Q Consensus 954 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~ 1033 (1108)
++++|.+... .+...+++|++|++++|. +..+|..+..+++
T Consensus 175 ~Ls~N~l~~~--------------------------------~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~l~~ 215 (487)
T 3oja_A 175 NLQYNFIYDV--------------------------------KGQVVFAKLKTLDLSSNK-------LAFMGPEFQSAAG 215 (487)
T ss_dssp ECTTSCCCEE--------------------------------ECCCCCTTCCEEECCSSC-------CCEECGGGGGGTT
T ss_pred ecCCCccccc--------------------------------cccccCCCCCEEECCCCC-------CCCCCHhHcCCCC
Confidence 4444443322 112335555555555555 3444444555555
Q ss_pred CcEeEeeccCccccccccccccCCCcceEecccccCC-CCCcccCCCCCCCccEEeee
Q 001281 1034 PEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRAL-KSLPQEVMGNNAQLEKLFIK 1090 (1108)
Q Consensus 1034 L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~lp~~~l~~l~~L~~L~l~ 1090 (1108)
|+.|+++ .|.++.+|..+..+++|+.|++++|+-. ..+|. .+..++.|+.++++
T Consensus 216 L~~L~Ls--~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~-~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 216 VTWISLR--NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQ 270 (487)
T ss_dssp CSEEECT--TSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH-HHTTCHHHHHHHHH
T ss_pred ccEEEec--CCcCcccchhhccCCCCCEEEcCCCCCcCcchHH-HHHhCCCCcEEecc
Confidence 5556655 4455555555445555555555554322 12232 34444555554443
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=8.9e-16 Score=166.88 Aligned_cols=220 Identities=21% Similarity=0.221 Sum_probs=168.8
Q ss_pred ccEEEecCccccccCcchhcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCC
Q 001281 597 LRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGA 675 (1108)
Q Consensus 597 Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 675 (1108)
-++++.+++.++.+|..+ .++|++|++++|.++.+| ..+.++++|++|++++|......|..+.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 378899999999999765 479999999999999887 46899999999999998644444788999999999999999
Q ss_pred CCCCcC-CccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecC
Q 001281 676 NSLEGM-PYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGS 754 (1108)
Q Consensus 676 ~~~~~l-p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 754 (1108)
..+..+ |..+..+++|++|+... +.+....+..+..+++|+.|++++|.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~------------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDR------------------------------CGLQELGPGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTT------------------------------SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhcCCcCCCEEECCC------------------------------CcCCEECHhHhhCCcCCCEEECCCCc
Confidence 756666 55677777777774211 11112223346678899999999887
Q ss_pred CCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccc-cccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEe
Q 001281 755 QFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMW-IGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTI 832 (1108)
Q Consensus 755 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 832 (1108)
...... ..+..+++|+.|++++|....+|.. +. .+++|+.|++++|.+....| .+..+++|+.|++
T Consensus 141 l~~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 141 LQALPD----------DTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp CCCCCT----------TTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccCH----------hHhccCCCccEEECCCCcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 543222 2256788999999999998888764 44 46899999999999877655 5889999999999
Q ss_pred cCCCCceeeCcccccCcccCcCCccceEecccCC
Q 001281 833 KGMTRLKSIGSEFYGEDILNTFKTLETLRFENLP 866 (1108)
Q Consensus 833 ~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~ 866 (1108)
++|... .++.. .+..+++|+.|++.+.+
T Consensus 209 ~~n~l~-~~~~~-----~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 209 FANNLS-ALPTE-----ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSSCCS-CCCHH-----HHTTCTTCCEEECCSSC
T ss_pred CCCcCC-cCCHH-----HcccCcccCEEeccCCC
Confidence 998643 33322 23468999999998864
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=5.6e-17 Score=178.67 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=38.3
Q ss_pred CCCCCCCeEEEeecCCCCCcc---ccccCCcCcceEEEEeCCCCCCCC--CCCCCCCCccEEEecCCC
Q 001281 774 QPHTNLKKLAITSYSGENFPM---WIGDLSFSKMEVLELQNCQNCTSL--PSLSMLGSLKQLTIKGMT 836 (1108)
Q Consensus 774 ~~~~~L~~L~l~~~~~~~~p~---~~~~~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~ 836 (1108)
..+++|++|++++|.+..++. .+.. .+++|+.|+|++|.+.+.. +.+..+++|++|++++|.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAA-ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHH-TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHh-cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 445667777777666653332 2211 2467777888777776544 345567777777777765
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=2.9e-15 Score=162.44 Aligned_cols=200 Identities=20% Similarity=0.189 Sum_probs=118.3
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchhccCCCCccE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRH 669 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 669 (1108)
+.++++++.++++++.++.+|..+. ++|++|+|++|.++.+ |..+.++++|++|++++|. +..+|.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 4456667777777777777766553 5677777777777655 3456777777777777753 4555543 66777777
Q ss_pred EeecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceE
Q 001281 670 LDIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALS 749 (1108)
Q Consensus 670 L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 749 (1108)
|++++|. +..+|..+..+++|+.|.... +.+....+..+..+++|+.|+
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~------------------------------N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSF------------------------------NRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEECCS------------------------------SCCCCCCSSTTTTCTTCCEEE
T ss_pred EECCCCc-CCcCchhhccCCCCCEEECCC------------------------------CcCcccCHHHHcCCCCCCEEE
Confidence 7777766 556666555555555553111 001111112244455566666
Q ss_pred EEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccE
Q 001281 750 LQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQ 829 (1108)
Q Consensus 750 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 829 (1108)
+++|....... ..+..+++|+.|++++|.+..+|..... .+++|+.|+|++|.+....+.+..+++|+.
T Consensus 131 L~~N~l~~~~~----------~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 131 LKGNELKTLPP----------GLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPF 199 (290)
T ss_dssp CTTSCCCCCCT----------TTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSE
T ss_pred CCCCCCCccCh----------hhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhcccccCCe
Confidence 65554332211 1134556777777777777777665432 356777777777776544445666677777
Q ss_pred EEecCCC
Q 001281 830 LTIKGMT 836 (1108)
Q Consensus 830 L~L~~~~ 836 (1108)
|++.+|+
T Consensus 200 l~L~~Np 206 (290)
T 1p9a_G 200 AFLHGNP 206 (290)
T ss_dssp EECCSCC
T ss_pred EEeCCCC
Confidence 7777765
No 77
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=4.8e-15 Score=170.83 Aligned_cols=315 Identities=10% Similarity=-0.009 Sum_probs=184.9
Q ss_pred CCceeccchhHHHHHHHH-hCCCCC-CCCeEEEEE--EcCCCCcHHHHHHHHhcCccccc--ccc-ceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMV-LSDDPS-DSMFRVIPI--VGMAGIGKTTLAREVYNDKAVSD--IKF-DIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L-~~~~~~-~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~~~~~~~ 255 (1108)
+..|+||+++++++.+++ .....+ ....+.+.| +|++|+||||||+++++...... ..+ ..++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999888 421100 012356666 99999999999999998643210 011 23578887777788
Q ss_pred HHHHHHHHHHhcCCCCC-cccHHHHHHHHHHHhC--CceEEEEEeCCCCC------ChhhHHHHHhhhccC---C--CCc
Q 001281 256 LSISMALLESITCKPCD-LKALNEVQVQLQKALD--GKKFLLVLDDVWNE------NYSLWEDLKAPFLAA---A--PNS 321 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~~~l~~~l~~~---~--~gs 321 (1108)
..++..++.+++..... ..+..+....+.+.+. +++++||+||+|.- ..+.+..+...+... + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998764321 2234455556666654 67999999999652 123444444444322 2 345
Q ss_pred EEEEecCchhhhhhcc--------c-cceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcC------C
Q 001281 322 KIIVTTRHSHVASTMG--------S-VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCR------G 386 (1108)
Q Consensus 322 ~iivTtR~~~v~~~~~--------~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~------g 386 (1108)
.||+||+...+...+. . ...+.+.+++.++++++|...+........ ..++....|++.|+ |
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV---WEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS---CCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC---CChHHHHHHHHHHHHhccCCC
Confidence 5888887654322111 1 123999999999999999765421111001 11267789999999 9
Q ss_pred chHHHHHHHhhh---c---CC--CChhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHHHHhHhcccC--CCceec
Q 001281 387 LPLAAKTLGGLL---R---TK--HGDNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKRCFAYCAIFP--KDYELK 456 (1108)
Q Consensus 387 lPLai~~~~~~l---~---~~--~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~i~ 456 (1108)
.|..+..+.... + .. -+.+.+......... ...+.-++..||++.+.++..++.+. .+..+.
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 997655544321 1 11 123334433332110 12233457889999999999888753 233455
Q ss_pred hHHHHHHHH--H-cCCccCCCCchhHHHHHHHHHHHHHhCccccccCC---CCCeEEEchhH
Q 001281 457 EKELVFLWM--A-EGIIQQPRNNKQLEDWGSECFHDLVSRSIFQQSSG---DGSKFVMHDLV 512 (1108)
Q Consensus 457 ~~~li~~w~--a-~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~~~---~~~~~~~H~lv 512 (1108)
...+...+. + .-. .. ..........++++|++.++|..... ...+|++|++.
T Consensus 330 ~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMY-NV---KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHS-CC---CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHHhhc-CC---CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 555544332 2 111 00 00113446678999999999976432 23345566554
No 78
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=3e-14 Score=160.26 Aligned_cols=291 Identities=12% Similarity=0.123 Sum_probs=178.6
Q ss_pred cCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC------CH
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF------DV 255 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~------~~ 255 (1108)
.+..|+||+++++++.+++... +++.|+|++|+|||||++++++.. + .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~-------~~v~i~G~~G~GKT~Ll~~~~~~~-------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY-------PLTLLLGIRRVGKSSLLRAFLNER-------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC-------SEEEEECCTTSSHHHHHHHHHHHS-------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC-------CeEEEECCCcCCHHHHHHHHHHHc-------C-cEEEEeecccccccCCCH
Confidence 4567999999999999988532 589999999999999999998752 2 6677765432 55
Q ss_pred HHHHHHHHHHhcC----------------CCC--CcccHHHHHHHHHHHhCC-ceEEEEEeCCCCCCh-------hhHHH
Q 001281 256 LSISMALLESITC----------------KPC--DLKALNEVQVQLQKALDG-KKFLLVLDDVWNENY-------SLWED 309 (1108)
Q Consensus 256 ~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~~~ 309 (1108)
..+...+...+.. ... ......++...+.+.... ++++||+||++.-+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666665432 000 113455555566555543 399999999965321 22333
Q ss_pred HHhhhccCCCCcEEEEecCchhhhhh----------c-cc-cceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHH
Q 001281 310 LKAPFLAAAPNSKIIVTTRHSHVAST----------M-GS-VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFH 377 (1108)
Q Consensus 310 l~~~l~~~~~gs~iivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 377 (1108)
+... ....++.++|+|++...+... . +. ...+.+.+|+.+|+.+++........... ..+.+
T Consensus 155 L~~~-~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-----~~~~~ 228 (350)
T 2qen_A 155 FAYA-YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-----PENEI 228 (350)
T ss_dssp HHHH-HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-----CHHHH
T ss_pred HHHH-HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-----CHHHH
Confidence 3322 222357899999887543111 1 11 24789999999999999987542211111 11567
Q ss_pred HHHHHhcCCchHHHHHHHhhhcCCCChhHHH-HHHhhccCCCCCCCChhHHHHHhhhcC---ChhHHHHHhHhcccCCCc
Q 001281 378 KKVVQKCRGLPLAAKTLGGLLRTKHGDNAWE-DILNSNIWDLPEQSGVQPVLKLSYHYL---PSHLKRCFAYCAIFPKDY 453 (1108)
Q Consensus 378 ~~i~~~c~glPLai~~~~~~l~~~~~~~~w~-~~l~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~~~~fp~~~ 453 (1108)
.+|++.|+|+|+++..++..+........+. ...+. +...+.-.+..+ ++..+..+..+|. +
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV----------AKGLIMGELEELRRRSPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-
Confidence 8999999999999999887643211221121 11111 111111122223 7888999999987 2
Q ss_pred eechHHHHHHHHHcCCccCCCCchhHHHHHHHHHHHHHhCccccccCCCCCeEEE-chhHHHHHH
Q 001281 454 ELKEKELVFLWMAEGIIQQPRNNKQLEDWGSECFHDLVSRSIFQQSSGDGSKFVM-HDLVHDLAQ 517 (1108)
Q Consensus 454 ~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~-H~lv~~~a~ 517 (1108)
.+....+.....+.. . . . .......+++.|++.++|...+ ..|++ |++++++.+
T Consensus 295 ~~~~~~l~~~~~~~~-~-~----~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 YNRWSLIRDYLAVKG-T-K----I-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp CCSHHHHHHHHHHTT-C-C----C-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-C-C----C-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 234445544332211 0 0 0 1345678999999999998652 35665 778887754
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.1e-15 Score=178.87 Aligned_cols=242 Identities=14% Similarity=0.134 Sum_probs=151.6
Q ss_pred cCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 592 PKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
..+++|++|+|++|.++.+ |..|+.+++|++|+|++|.++.+++ ++.+++|++|++++|. +..+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEE
Confidence 3445899999999998877 5678889999999999998886665 8889999999999874 555553 3889999
Q ss_pred eecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEE
Q 001281 671 DIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSL 750 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 750 (1108)
++++|. +..+|.. .+++|+.|+. ..+.+....+..+..+++|+.|++
T Consensus 105 ~L~~N~-l~~~~~~--~l~~L~~L~L------------------------------~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 105 HAANNN-ISRVSCS--RGQGKKNIYL------------------------------ANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp ECCSSC-CCCEEEC--CCSSCEEEEC------------------------------CSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred ECcCCc-CCCCCcc--ccCCCCEEEC------------------------------CCCCCCCCCchhhcCCCCCCEEEC
Confidence 998887 5555432 2344544431 112222223334455566677777
Q ss_pred EecCCCCCChhhhhhhhhhhcCCC-CCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccE
Q 001281 751 QWGSQFDSSREEVAKEHTVLDMLQ-PHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQ 829 (1108)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 829 (1108)
++|......+.. +. .+++|+.|++++|.+..+|... .+++|+.|+|++|.+.+..|.+..+++|+.
T Consensus 152 s~N~l~~~~~~~----------l~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~ 218 (487)
T 3oja_A 152 KLNEIDTVNFAE----------LAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (487)
T ss_dssp TTSCCCEEEGGG----------GGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred CCCCCCCcChHH----------HhhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCccE
Confidence 666543222111 11 3467777777777766665443 256777777777777665556777777777
Q ss_pred EEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccCCcccEEeecCCCC
Q 001281 830 LTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPK 895 (1108)
Q Consensus 830 L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 895 (1108)
|++++|. +..+|.. +..+++|+.|++.+.+-... ..+..+..++.|+.|++..+..
T Consensus 219 L~Ls~N~-l~~lp~~------l~~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~L~~l~~~~~~~ 274 (487)
T 3oja_A 219 ISLRNNK-LVLIEKA------LRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQTVKK 274 (487)
T ss_dssp EECTTSC-CCEECTT------CCCCTTCCEEECTTCCBCHH---HHHHHHTTCHHHHHHHHHHHHH
T ss_pred EEecCCc-Ccccchh------hccCCCCCEEEcCCCCCcCc---chHHHHHhCCCCcEEecccccc
Confidence 7777765 3334432 23467777777776543200 0112345667777777654433
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=3.7e-15 Score=160.45 Aligned_cols=87 Identities=23% Similarity=0.410 Sum_probs=59.8
Q ss_pred cCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccc-hhccCCCCccEE
Q 001281 592 PKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLP-SKMWNLINLRHL 670 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L 670 (1108)
..++.|+.|++++|.++.++ .+..+++|++|++++|.++.++ .++++++|++|++++|. +..+| ..++++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence 34567777777777777665 4677777888888777777654 67777777777777764 34444 345777777777
Q ss_pred eecCCCCCCcCC
Q 001281 671 DIEGANSLEGMP 682 (1108)
Q Consensus 671 ~l~~~~~~~~lp 682 (1108)
++++|. +..+|
T Consensus 115 ~L~~n~-l~~~~ 125 (272)
T 3rfs_A 115 VLVENQ-LQSLP 125 (272)
T ss_dssp ECTTSC-CCCCC
T ss_pred ECCCCc-CCccC
Confidence 777776 44443
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=2.6e-15 Score=164.56 Aligned_cols=190 Identities=21% Similarity=0.226 Sum_probs=131.0
Q ss_pred CCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 593 KFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
.+++|++|++++|.++.+| .+..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4567888888888888776 57888888888888888888777 8888888888888865 55665 4788888888888
Q ss_pred cCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEe
Q 001281 673 EGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQW 752 (1108)
Q Consensus 673 ~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 752 (1108)
++|. +..+|. +..+++|+.|+.... .+.... .+..+++|+.|+++.
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n------------------------------~l~~~~--~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLN------------------------------QITNIS--PLAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSS------------------------------CCCCCG--GGGGCTTCCEEECCS
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCC------------------------------ccCcCc--cccCCCCccEEEccC
Confidence 8887 555553 666666666531110 000000 044556777777776
Q ss_pred cCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEe
Q 001281 753 GSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTI 832 (1108)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 832 (1108)
|..... ..+..+++|+.|++++|....++. +. .+++|+.|+|++|.+.. ++.+..+++|+.|++
T Consensus 161 n~l~~~------------~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~l 224 (308)
T 1h6u_A 161 AQVSDL------------TPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISD-VSPLANTSNLFIVTL 224 (308)
T ss_dssp SCCCCC------------GGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEE
T ss_pred CcCCCC------------hhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCc-cccccCCCCCCEEEc
Confidence 654221 114556788888888887777765 33 46788888888887754 335788888888888
Q ss_pred cCCC
Q 001281 833 KGMT 836 (1108)
Q Consensus 833 ~~~~ 836 (1108)
++|.
T Consensus 225 ~~N~ 228 (308)
T 1h6u_A 225 TNQT 228 (308)
T ss_dssp EEEE
T ss_pred cCCe
Confidence 8776
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.7e-14 Score=155.16 Aligned_cols=196 Identities=23% Similarity=0.310 Sum_probs=110.5
Q ss_pred cccEEEecCccccccCcchhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchh-ccCCCCccEEeec
Q 001281 596 KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSK-MWNLINLRHLDIE 673 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~ 673 (1108)
..+.++++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|. +..+|.. +.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECC
Confidence 45667777777777776554 567777777777776654 56777777777777754 4455544 4667777777777
Q ss_pred CCCCCCcCCcc-CCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEe
Q 001281 674 GANSLEGMPYG-MEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQW 752 (1108)
Q Consensus 674 ~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 752 (1108)
+|. +..+|.. +..+++|+.|.... +.+....+..+..+++|+.|++++
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~------------------------------n~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDR------------------------------NQLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCS------------------------------SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCc-CCcCCHhHcccccCCCEEECCC------------------------------CccCeeCHHHhCcCcCCCEEECCC
Confidence 776 5555433 34455554443110 001111112234455566666655
Q ss_pred cCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEE
Q 001281 753 GSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLT 831 (1108)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 831 (1108)
|........ .+..+++|+.|++++|....+|..... .+++|+.|+|++|.+....+ .+..+++|+.|+
T Consensus 143 n~l~~~~~~----------~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 143 NELQSLPKG----------VFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp SCCCCCCTT----------TTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCccCHh----------HccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 543221111 134456666666666666666543221 34667777777776554333 256667777777
Q ss_pred ecCCC
Q 001281 832 IKGMT 836 (1108)
Q Consensus 832 L~~~~ 836 (1108)
+++|+
T Consensus 212 l~~N~ 216 (270)
T 2o6q_A 212 LQENP 216 (270)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 76664
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=3.6e-15 Score=161.19 Aligned_cols=202 Identities=18% Similarity=0.138 Sum_probs=135.0
Q ss_pred CcccEEEecCccccccCc-chhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 595 KKLRVLSLEGYYVTQLPN-SIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
+.|++|++++|.++.++. .+.++++|++|++++|.++.+|. .+.++++|++|++++|......|..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468888888888887754 77888888888888888887754 6788888888888887544444466788888888888
Q ss_pred cCCCCCCcCCc-cCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhh-hhhhccCCCCCCCceEE
Q 001281 673 EGANSLEGMPY-GMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLRE-AGEAMLCEKQNLQALSL 750 (1108)
Q Consensus 673 ~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~l 750 (1108)
++|. +..++. .++.+++|++|+.... .+.. ..+..+..+++|+.|++
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n------------------------------~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHN------------------------------LIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSS------------------------------CCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCC------------------------------ccceecCchhhccCCCCCEEEC
Confidence 8887 555543 4666666666642111 0101 01234556677888888
Q ss_pred EecCCCCCChhhhhhhhhhhcCCCCCCCCC-eEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCC-CCCCCCcc
Q 001281 751 QWGSQFDSSREEVAKEHTVLDMLQPHTNLK-KLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPS-LSMLGSLK 828 (1108)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~ 828 (1108)
++|......... +..+..++.+. .|++++|....+|..... ..+|+.|+|++|.+....+. +..+++|+
T Consensus 157 s~N~l~~~~~~~-------~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 157 SSNKIQSIYCTD-------LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp CSSCCCEECGGG-------GHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred CCCCCCcCCHHH-------hhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhccccccc
Confidence 777654322211 11122223333 788888888777766553 35899999999987655443 67899999
Q ss_pred EEEecCCC
Q 001281 829 QLTIKGMT 836 (1108)
Q Consensus 829 ~L~L~~~~ 836 (1108)
.|++++|+
T Consensus 228 ~L~l~~N~ 235 (276)
T 2z62_A 228 KIWLHTNP 235 (276)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 99998876
No 84
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.56 E-value=2.3e-15 Score=134.77 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=69.1
Q ss_pred HHHHHHHhhchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhc--cCCcHHHHHHHHHHHHHhHhhHhHHHHHH
Q 001281 13 FQALFDRLASTDFLNFIRQFQGGVDSDQLKNWEQKLKMIQAVLGDAEEK--QLTDEAVKIWLDDLRDLAYDAEDILDEFA 90 (1108)
Q Consensus 13 ~~~l~~~l~~~~~~~~~~~~~~gv~~~~~~~l~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~eD~ld~~~ 90 (1108)
++.+++||++....++....+ |+ +++++|+++|++|++||.||+.+ +.+++.++.|+++|||+|||+||+||+|.
T Consensus 3 v~~ll~KL~~ll~~E~~l~~g--v~-~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKG--VK-KNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc--hH-HHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777776677877765 98 99999999999999999999988 56899999999999999999999999999
Q ss_pred HHHH
Q 001281 91 TQAL 94 (1108)
Q Consensus 91 ~~~~ 94 (1108)
++..
T Consensus 80 ~~~~ 83 (115)
T 3qfl_A 80 VQVD 83 (115)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9874
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=7.8e-14 Score=146.98 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=57.9
Q ss_pred CCCCCcc-EEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccc-cccC-CCcceEecccccCCCCCcc
Q 001281 999 QGFQQVE-TLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLM-NNLRYLKIENSRALKSLPQ 1075 (1108)
Q Consensus 999 ~~l~~L~-~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l-~~L~~L~l~~c~~l~~lp~ 1075 (1108)
..+++|+ +|++++|. +..+|......++|++|+++ ++..++.+|.. +..+ ++|+.|++++ +.++.+|.
T Consensus 152 ~~l~~L~~~L~l~~n~-------l~~i~~~~~~~~~L~~L~L~-~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~ 222 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNG-------FTSVQGYAFNGTKLDAVYLN-KNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPS 222 (239)
T ss_dssp TTTBSSEEEEECCSCC-------CCEECTTTTTTCEEEEEECT-TCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCC
T ss_pred cchhcceeEEEcCCCC-------CcccCHhhcCCCCCCEEEcC-CCCCcccCCHHHhhccccCCcEEECCC-CccccCCh
Confidence 4456677 77777776 44555443333788888887 44458888764 4467 8889999887 47888887
Q ss_pred cCCCCCCCccEEeeecCcCc
Q 001281 1076 EVMGNNAQLEKLFIKYCDNI 1095 (1108)
Q Consensus 1076 ~~l~~l~~L~~L~l~~c~~L 1095 (1108)
. .+++|+.|++++|+.|
T Consensus 223 ~---~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 223 K---GLEHLKELIARNTWTL 239 (239)
T ss_dssp T---TCTTCSEEECTTC---
T ss_pred h---HhccCceeeccCccCC
Confidence 3 4778888888888654
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.1e-13 Score=154.80 Aligned_cols=219 Identities=18% Similarity=0.157 Sum_probs=118.7
Q ss_pred cEEEecCccccccCcchhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccch-hccCCCCccEEee-cC
Q 001281 598 RVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLDI-EG 674 (1108)
Q Consensus 598 r~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l-~~ 674 (1108)
++++.++++++++|..+ .+++++|+|++|+|+.+|. .|.+|++|++|+|++|...+.+|. .+.++++|+++.. ++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45677777777777665 3577788888888877775 467788888888877765565654 4567777665433 33
Q ss_pred CCCCCcCCc-cCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEec
Q 001281 675 ANSLEGMPY-GMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWG 753 (1108)
Q Consensus 675 ~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 753 (1108)
|. +..+|. .+..+++|+.|....... ..+. ...+....++..|++..+
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~l~~n~l------~~~~------------------------~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 90 NN-LLYINPEAFQNLPNLQYLLISNTGI------KHLP------------------------DVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp TT-CCEECTTSBCCCTTCCEEEEEEECC------SSCC------------------------CCTTCCBSSCEEEEEESC
T ss_pred Cc-ccccCchhhhhcccccccccccccc------ccCC------------------------chhhcccchhhhhhhccc
Confidence 44 555543 355666666554222110 0000 000111223444555433
Q ss_pred CCCCCChhhhhhhhhhhcCCCC-CCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCC--CCCCCCccEE
Q 001281 754 SQFDSSREEVAKEHTVLDMLQP-HTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPS--LSMLGSLKQL 830 (1108)
Q Consensus 754 ~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L 830 (1108)
......+. ..+.. ...++.|++++|.+..+|...+. ..+|+.|++++|+..+.+|. +..+++|+.|
T Consensus 139 ~~i~~l~~---------~~f~~~~~~l~~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 139 INIHTIER---------NSFVGLSFESVILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp TTCCEECT---------TSSTTSBSSCEEEECCSSCCCEECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred cccccccc---------cchhhcchhhhhhccccccccCCChhhcc--ccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 22111110 01122 23466677777777666665542 35677777776555555552 5677777777
Q ss_pred EecCCCCceeeCcccccCcccCcCCccceEecccCCccc
Q 001281 831 TIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWE 869 (1108)
Q Consensus 831 ~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 869 (1108)
++++|. ++.+|. ..|.+|+.|.+.++.+++
T Consensus 208 dLs~N~-l~~lp~--------~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 208 DISRTR-IHSLPS--------YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp ECTTSC-CCCCCS--------SSCTTCCEEECTTCTTCC
T ss_pred hcCCCC-cCccCh--------hhhccchHhhhccCCCcC
Confidence 777664 333332 234445555544444433
No 87
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=1.8e-13 Score=154.41 Aligned_cols=291 Identities=11% Similarity=0.061 Sum_probs=173.3
Q ss_pred cCCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC-----CCHH
Q 001281 182 TERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE-----FDVL 256 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~ 256 (1108)
.+..|+||+++++.+.+ +.. +++.|+|++|+|||||++++.+... . ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~--------~~v~i~G~~G~GKT~L~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA--------PITLVLGLRRTGKSSIIKIGINELN-----L-PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS--------SEEEEEESTTSSHHHHHHHHHHHHT-----C-CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC--------CcEEEECCCCCCHHHHHHHHHHhcC-----C-CEEEEEchhhccccCCCHH
Confidence 35679999999999998 632 4899999999999999999987632 1 2578887643 3444
Q ss_pred HHHHHHHHHhcC--------------------CCC---------CcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh---
Q 001281 257 SISMALLESITC--------------------KPC---------DLKALNEVQVQLQKALDGKKFLLVLDDVWNENY--- 304 (1108)
Q Consensus 257 ~~~~~i~~~l~~--------------------~~~---------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--- 304 (1108)
.....+.+.+.. +.. ......++...+.+... ++++||+||++.-+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444443310 000 01234555555554433 499999999965321
Q ss_pred hhHHHHHhhhccCCCCcEEEEecCchhhhhh----------cc-c-cceeeCCCCChhhHHHHHHhhhcCCCCccchhhh
Q 001281 305 SLWEDLKAPFLAAAPNSKIIVTTRHSHVAST----------MG-S-VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRI 372 (1108)
Q Consensus 305 ~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~----------~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 372 (1108)
..|..+...+.....+.++|+|++....... .. . ...+.+.+|+.+|+.+++.......... ..
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~-- 230 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID--FK-- 230 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC--CC--
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC--CC--
Confidence 2233333333333357899999997643211 11 1 2578999999999999998754211111 11
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHhhhcCCCChhHHHH-HHhhccCCCCCCCChhHHHH-Hhhh--cCChhHHHHHhHhcc
Q 001281 373 SGLFHKKVVQKCRGLPLAAKTLGGLLRTKHGDNAWED-ILNSNIWDLPEQSGVQPVLK-LSYH--YLPSHLKRCFAYCAI 448 (1108)
Q Consensus 373 ~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~~~ 448 (1108)
+. ..|++.|+|+|+++..++..+........|.. +.+... ..+...+. +.++ .+++..+..+..+|+
T Consensus 231 --~~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 231 --DY-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK------KLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp --CH-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred --cH-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH------HHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 12 78999999999999999887643322223321 111100 00111111 1111 678889999999998
Q ss_pred cCCCceechHHHHHHHH-HcCCccCCCCchhHHHHHHHHHHHHHhCccccccCCCCCeEE-EchhHHHHH
Q 001281 449 FPKDYELKEKELVFLWM-AEGIIQQPRNNKQLEDWGSECFHDLVSRSIFQQSSGDGSKFV-MHDLVHDLA 516 (1108)
Q Consensus 449 fp~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~-~H~lv~~~a 516 (1108)
+. +...+....- ..|. .........+++.|++.++|...+ ..|+ .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 21 3444432211 1121 001245678899999999998653 3566 478888763
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=1.1e-14 Score=153.52 Aligned_cols=197 Identities=15% Similarity=0.134 Sum_probs=133.0
Q ss_pred cccEEEecCccccccCc-chhcCCCCcEEEeeCcc-ccccch-hhhcCccCcEeeecCCcCCcccc-hhccCCCCccEEe
Q 001281 596 KLRVLSLEGYYVTQLPN-SIKELKLLRYLNVAGTQ-IRSLPE-STSSLMHLRVLILRDCSRLTRLP-SKMWNLINLRHLD 671 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~Ls~~~-i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~ 671 (1108)
.|++|++++|.++.+|. .+.++++|++|++++|. ++.+|. .+.++++|++|++++|+.+..+| ..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78899999999988865 68889999999999996 888875 67889999999998844566666 4678889999999
Q ss_pred ecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEE
Q 001281 672 IEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQ 751 (1108)
Q Consensus 672 l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 751 (1108)
+++|. +..+|. ++.+++|+. |+.|+++
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~~---------------------------------------------------L~~L~l~ 138 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTDI---------------------------------------------------FFILEIT 138 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCCS---------------------------------------------------EEEEEEE
T ss_pred CCCCC-Cccccc-ccccccccc---------------------------------------------------ccEEECC
Confidence 98887 555664 444433331 2234444
Q ss_pred ec-CCCCCChhhhhhhhhhhcCCCCCCCCC-eEEEeecCCCCCccccccCCcCcceEEEEeCCC-CCCCCC-CCCCC-CC
Q 001281 752 WG-SQFDSSREEVAKEHTVLDMLQPHTNLK-KLAITSYSGENFPMWIGDLSFSKMEVLELQNCQ-NCTSLP-SLSML-GS 826 (1108)
Q Consensus 752 ~~-~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~-~~~~l~-~l~~l-~~ 826 (1108)
.| ....... ..+..+++|+ .|++++|....+|...... ++|+.|++++|. +....+ .+..+ ++
T Consensus 139 ~N~~l~~i~~----------~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~--~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 139 DNPYMTSIPV----------NAFQGLCNETLTLKLYNNGFTSVQGYAFNG--TKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp SCTTCCEECT----------TTTTTTBSSEEEEECCSCCCCEECTTTTTT--CEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred CCcchhhcCc----------ccccchhcceeEEEcCCCCCcccCHhhcCC--CCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 43 2111000 1144456677 7777777777777655532 678888888885 543323 36777 88
Q ss_pred ccEEEecCCCCceeeCcccccCcccCcCCccceEecccCC
Q 001281 827 LKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLP 866 (1108)
Q Consensus 827 L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~ 866 (1108)
|+.|++++|. ++.++. ..|++|+.|.+.+..
T Consensus 207 L~~L~l~~N~-l~~l~~--------~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 207 PSLLDVSQTS-VTALPS--------KGLEHLKELIARNTW 237 (239)
T ss_dssp CSEEECTTCC-CCCCCC--------TTCTTCSEEECTTC-
T ss_pred CcEEECCCCc-cccCCh--------hHhccCceeeccCcc
Confidence 8888888865 334432 257888888887654
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=1.8e-13 Score=148.31 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=146.8
Q ss_pred cccCCcccEEeecCCCCCCCCCCCC-CCCccEEEEccCCCccc---cCCCCCcccEEEEeecCCccccCCCCCCCccEEE
Q 001281 879 LAGFSSLRELSILKCPKFSGKLPEL-LPSLEILVISKCADLVV---PFSSFPMLCRLEIEECKGITCSTPIDCKLIESMT 954 (1108)
Q Consensus 879 ~~~~~~L~~L~l~~c~~l~~~~p~~-l~~L~~L~l~~~~~l~~---~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~ 954 (1108)
+..+++++++++.+ +.++ .+|.. .++++.|++++|..... .+..+++|++|++++|..........+++|+.|+
T Consensus 6 ~~~l~~l~~l~~~~-~~l~-~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTT-SCCS-SCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccccCCccEEECCC-CCCC-cCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 45677888888877 4665 56653 45788888888876542 4667889999999988765555557889999999
Q ss_pred EecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc---cCCCCCccEEEEeccCCccccccccCCc-ccCCC
Q 001281 955 ISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL---KQGFQQVETLRIGNSEQIKSWLQFDKPE-QGLHV 1030 (1108)
Q Consensus 955 l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~p-~~l~~ 1030 (1108)
+++|.+..+ |..+..+++|+.|+++++ .++.++ +..+++|++|++++|. +..+| ..|..
T Consensus 84 Ls~N~l~~l---------~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~ 146 (290)
T 1p9a_G 84 LSHNQLQSL---------PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-------LKTLPPGLLTP 146 (290)
T ss_dssp CCSSCCSSC---------CCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-------CCCCCTTTTTT
T ss_pred CCCCcCCcC---------chhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-------CCccChhhccc
Confidence 998887643 334557889999999885 444444 5678899999999998 44554 45788
Q ss_pred CCCCcEeEeeccCcccccccccc-ccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1031 LSSPEDVSIEENCMSLVSFSEVI-FLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1031 l~~L~~L~l~~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
+++|+.|+++ .|.++.+|... ..+++|+.|+++++ .++.+|. .+..+++|+.|+++++|
T Consensus 147 l~~L~~L~L~--~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~-~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 147 TPKLEKLSLA--NNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPK-GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECT--TSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCCCSEEECCSCC
T ss_pred ccCCCEEECC--CCcCCccCHHHhcCcCCCCEEECCCC-cCCccCh-hhcccccCCeEEeCCCC
Confidence 9999999997 77899998865 46899999999874 7889998 55567899999999876
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=4.4e-13 Score=144.04 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=145.0
Q ss_pred CcccEEeecCCCCCCCCCCCCC-CCccEEEEccCCCccc---cCCCCCcccEEEEeecCCccc--cCCCCCCCccEEEEe
Q 001281 883 SSLRELSILKCPKFSGKLPELL-PSLEILVISKCADLVV---PFSSFPMLCRLEIEECKGITC--STPIDCKLIESMTIS 956 (1108)
Q Consensus 883 ~~L~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~l~~---~~~~l~~L~~L~l~~c~~l~~--~~~~~l~~L~~L~l~ 956 (1108)
+.++.+++++ +.++ .+|..+ ++|++|++++|..... .+..+++|++|++++|..... ..+..+++|++|+++
T Consensus 16 ~~~~~l~~~~-~~l~-~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSS-KKLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTT-SCCS-SCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccC-CCCC-ccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4567788777 4665 567644 4688888888875443 356788999999988874333 235678999999999
Q ss_pred cCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc---cCCCCCccEEEEeccCCccccccccCCcc-cCCCCC
Q 001281 957 NSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL---KQGFQQVETLRIGNSEQIKSWLQFDKPEQ-GLHVLS 1032 (1108)
Q Consensus 957 ~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~p~-~l~~l~ 1032 (1108)
+|.+..+ .+..+..+++|++|+++++. ++.++ +..+++|++|++++|. +..+|. .+..++
T Consensus 94 ~n~l~~~--------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 94 DNKLQAL--------PIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE-------LQSLPKGVFDKLT 157 (270)
T ss_dssp SSCCCCC--------CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCT
T ss_pred CCcCCcC--------CHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc-------CCccCHhHccCCc
Confidence 8877644 23445678999999998854 44443 4678999999999998 555554 478899
Q ss_pred CCcEeEeeccCccccccccc-cccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1033 SPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1033 ~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
+|++|+++ .+.++.+|.. +..+++|++|++++| .++.+|...+..+++|+.|++++||
T Consensus 158 ~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLY--NNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECC--SSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccceeEec--CCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 99999998 6688888874 457899999999885 7888988778889999999999886
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=1.1e-15 Score=170.94 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=131.6
Q ss_pred CcccEEEecCccccccCcchhcCCCCcEEEeeCccccc--cchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 595 KKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRS--LPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
+.+++|++++|.++..+..+..+++|++|++++|.+.. +|..+.++++|++|++++|......|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56777777777777665556677777777777777662 6666777777777777777544456666777777777777
Q ss_pred cCCCCCCc--CCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEE
Q 001281 673 EGANSLEG--MPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSL 750 (1108)
Q Consensus 673 ~~~~~~~~--lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 750 (1108)
++|..+.. +|.. +..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~------------------------------------------------------~~~~~~L~~L~l 175 (336)
T 2ast_B 150 SGCSGFSEFALQTL------------------------------------------------------LSSCSRLDELNL 175 (336)
T ss_dssp TTCBSCCHHHHHHH------------------------------------------------------HHHCTTCCEEEC
T ss_pred CCCCCCCHHHHHHH------------------------------------------------------HhcCCCCCEEcC
Confidence 77632321 2221 233445555555
Q ss_pred Eec-CCCCCChhhhhhhhhhhcCCCCCC-CCCeEEEeecCC----CCCccccccCCcCcceEEEEeCCCC-CC-CCCCCC
Q 001281 751 QWG-SQFDSSREEVAKEHTVLDMLQPHT-NLKKLAITSYSG----ENFPMWIGDLSFSKMEVLELQNCQN-CT-SLPSLS 822 (1108)
Q Consensus 751 ~~~-~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~----~~~p~~~~~~~l~~L~~L~L~~~~~-~~-~l~~l~ 822 (1108)
++| .... ......+..++ +|++|++++|.. ..+|..+. .+++|+.|++++|.. .. .++.+.
T Consensus 176 ~~~~~l~~---------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 176 SWCFDFTE---------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp CCCTTCCH---------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred CCCCCcCh---------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 555 2210 00111122344 666666666532 22344433 357788888888873 32 344577
Q ss_pred CCCCccEEEecCCCCceeeCcccccCcccCcCCccceEecccCCcccccccccCCccccC-CcccEEeecCCCCCCCCCC
Q 001281 823 MLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGLLAGF-SSLRELSILKCPKFSGKLP 901 (1108)
Q Consensus 823 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~p 901 (1108)
.+++|++|++++|..+.. ..+ ..+..+++|+.|++.++ +.. ..+..+ .+|+.|+++ |+++++..|
T Consensus 245 ~l~~L~~L~l~~~~~~~~--~~~---~~l~~~~~L~~L~l~~~--i~~------~~~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIP--ETL---LELGEIPTLKTLQVFGI--VPD------GTLQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp GCTTCCEEECTTCTTCCG--GGG---GGGGGCTTCCEEECTTS--SCT------TCHHHHHHHSTTSEES-CCCSCCTTC
T ss_pred CCCCCCEeeCCCCCCCCH--HHH---HHHhcCCCCCEEeccCc--cCH------HHHHHHHhhCcceEEe-cccCccccC
Confidence 778888888888762221 111 12345777777777765 111 111222 234555554 456766666
Q ss_pred CCCC
Q 001281 902 ELLP 905 (1108)
Q Consensus 902 ~~l~ 905 (1108)
....
T Consensus 311 ~~~~ 314 (336)
T 2ast_B 311 PTIG 314 (336)
T ss_dssp SSCS
T ss_pred Cccc
Confidence 5443
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=5.8e-14 Score=151.70 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=74.9
Q ss_pred EEEecCccccccCcchhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCCC
Q 001281 599 VLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANS 677 (1108)
Q Consensus 599 ~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 677 (1108)
..+..+..++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|......+..+.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~- 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP- 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-
Confidence 45667777888988764 589999999999998876 78999999999999986444344578999999999999998
Q ss_pred CCcCC-ccCCCCCCCCccC
Q 001281 678 LEGMP-YGMEKLKHLQTLS 695 (1108)
Q Consensus 678 ~~~lp-~~i~~L~~L~~L~ 695 (1108)
+..++ ..+.++++|+.|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CCEECTTTTTTCTTCCEEE
T ss_pred cCccChhhhcCCccccEEE
Confidence 55554 4567777777664
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=5.1e-14 Score=154.83 Aligned_cols=204 Identities=17% Similarity=0.145 Sum_probs=140.5
Q ss_pred CCcccEEEecCccccc-cCcch--hcCCCCcEEEeeCcccccc-c----hhhhcCccCcEeeecCCcCCcccchhccCCC
Q 001281 594 FKKLRVLSLEGYYVTQ-LPNSI--KELKLLRYLNVAGTQIRSL-P----ESTSSLMHLRVLILRDCSRLTRLPSKMWNLI 665 (1108)
Q Consensus 594 l~~Lr~L~L~~~~i~~-lp~~i--~~l~~L~~L~Ls~~~i~~l-p----~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 665 (1108)
++.|++|++++|.++. .|..+ ..+++|++|++++|.++.. | ..+..+++|++|++++|......|..+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4569999999999874 47776 8899999999999988842 2 3456789999999999876555567788999
Q ss_pred CccEEeecCCCCCCc--CC--ccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCC
Q 001281 666 NLRHLDIEGANSLEG--MP--YGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCE 741 (1108)
Q Consensus 666 ~L~~L~l~~~~~~~~--lp--~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 741 (1108)
+|++|++++|..... ++ ..++.+++|++|..... ....+.......+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N---------------------------~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT---------------------------GMETPTGVCAALAAA 222 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS---------------------------CCCCHHHHHHHHHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC---------------------------CCCchHHHHHHHHhc
Confidence 999999999873221 22 22356666666642110 001112222223456
Q ss_pred CCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCC
Q 001281 742 KQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSL 821 (1108)
Q Consensus 742 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l 821 (1108)
+++|+.|++++|......+.. +..+..+++|++|++++|.+..+|.++. ++|+.|+|++|.+.+ +|.+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~-------~~~~~~~~~L~~L~Ls~N~l~~lp~~~~----~~L~~L~Ls~N~l~~-~~~~ 290 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPS-------APRCMWSSALNSLNLSFAGLEQVPKGLP----AKLRVLDLSSNRLNR-APQP 290 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSC-------CSSCCCCTTCCCEECCSSCCCSCCSCCC----SCCSCEECCSCCCCS-CCCT
T ss_pred CCCCCEEECCCCCCCccchhh-------HHhccCcCcCCEEECCCCCCCchhhhhc----CCCCEEECCCCcCCC-Cchh
Confidence 788999999888754332211 1223334789999999998888887763 689999999988754 3557
Q ss_pred CCCCCccEEEecCCC
Q 001281 822 SMLGSLKQLTIKGMT 836 (1108)
Q Consensus 822 ~~l~~L~~L~L~~~~ 836 (1108)
..+++|+.|++++|.
T Consensus 291 ~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 DELPEVDNLTLDGNP 305 (310)
T ss_dssp TSCCCCSCEECSSTT
T ss_pred hhCCCccEEECcCCC
Confidence 788899999998876
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=6.6e-13 Score=148.56 Aligned_cols=232 Identities=11% Similarity=0.084 Sum_probs=116.0
Q ss_pred CeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccc
Q 001281 780 KKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLE 858 (1108)
Q Consensus 780 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 858 (1108)
+.++.++++.+.+|..+. +++++|+|++|.+....+ .|.++++|++|+|++|...+.++.... ..++++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-----~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-----SNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCCTTCC----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-----CSCTTCC
T ss_pred CEEEecCCCCCccCcCcC----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-----hcchhhh
Confidence 456667777788887653 588999999988754443 478899999999999886666653211 1233333
Q ss_pred eEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCCCCCCccEEEEccCCCccc---cCCCCCcccEEEEee
Q 001281 859 TLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPELLPSLEILVISKCADLVV---PFSSFPMLCRLEIEE 935 (1108)
Q Consensus 859 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~---~~~~l~~L~~L~l~~ 935 (1108)
.+.+.+..++..+. +..+..+++ |+.|++++|..... .+....++..|++.+
T Consensus 83 ~~l~~~~N~l~~l~---~~~f~~l~~----------------------L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 83 EIRIEKANNLLYIN---PEAFQNLPN----------------------LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EEEEEEETTCCEEC---TTSBCCCTT----------------------CCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred hhhcccCCcccccC---chhhhhccc----------------------cccccccccccccCCchhhcccchhhhhhhcc
Confidence 33222222222211 122333444 44444444433221 122334566677766
Q ss_pred cCCcccc---CCCCC-CCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCccccc---CCCCCccEEE
Q 001281 936 CKGITCS---TPIDC-KLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLK---QGFQQVETLR 1008 (1108)
Q Consensus 936 c~~l~~~---~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~ 1008 (1108)
+..+... .+..+ ..++.|++++|.+..+... .....+|+.|++.+++.++.++. ..+++|++|+
T Consensus 138 ~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~---------~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS---------AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp CTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT---------SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred ccccccccccchhhcchhhhhhccccccccCCChh---------hccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 5544321 22232 3466677776665543211 11234455555555555544442 3344455555
Q ss_pred EeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceEecc
Q 001281 1009 IGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIE 1065 (1108)
Q Consensus 1009 l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~ 1065 (1108)
+++|. ++.+|. ..+.+|+.|.+. ++++++.+|. +..+++|+.+++.
T Consensus 209 Ls~N~-------l~~lp~--~~~~~L~~L~~l-~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 209 ISRTR-------IHSLPS--YGLENLKKLRAR-STYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CTTSC-------CCCCCS--SSCTTCCEEECT-TCTTCCCCCC-TTTCCSCCEEECS
T ss_pred cCCCC-------cCccCh--hhhccchHhhhc-cCCCcCcCCC-chhCcChhhCcCC
Confidence 55544 333432 123344444444 4444444443 2234445555443
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=2e-13 Score=149.53 Aligned_cols=146 Identities=13% Similarity=0.139 Sum_probs=69.0
Q ss_pred CCCCcccEEEEeecCCccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCC
Q 001281 923 SSFPMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQ 1002 (1108)
Q Consensus 923 ~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 1002 (1108)
..+++|++|++++|.......+..+++|+.|++++|.+..+. .+..+++|+.|++++|..-...++..++
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----------~l~~l~~L~~L~l~~n~l~~~~~l~~l~ 151 (308)
T 1h6u_A 82 KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT----------PLAGLSNLQVLYLDLNQITNISPLAGLT 151 (308)
T ss_dssp TTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG----------GGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred ccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCch----------hhcCCCCCCEEECCCCccCcCccccCCC
Confidence 344445555555444333333444555555555544443321 1224555555555544221111234455
Q ss_pred CccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccccccCCCcceEecccccCCCCCcccCCCCCC
Q 001281 1003 QVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNNA 1082 (1108)
Q Consensus 1003 ~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~ 1082 (1108)
+|++|++++|. +..++. +..+++|++|+++ .+.++.++. +..+++|++|++++| .++.++. +..++
T Consensus 152 ~L~~L~l~~n~-------l~~~~~-l~~l~~L~~L~l~--~n~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~--l~~l~ 217 (308)
T 1h6u_A 152 NLQYLSIGNAQ-------VSDLTP-LANLSKLTTLKAD--DNKISDISP-LASLPNLIEVHLKNN-QISDVSP--LANTS 217 (308)
T ss_dssp TCCEEECCSSC-------CCCCGG-GTTCTTCCEEECC--SSCCCCCGG-GGGCTTCCEEECTTS-CCCBCGG--GTTCT
T ss_pred CccEEEccCCc-------CCCChh-hcCCCCCCEEECC--CCccCcChh-hcCCCCCCEEEccCC-ccCcccc--ccCCC
Confidence 55555555554 333333 5555555555554 344555543 334555555555553 4455443 44555
Q ss_pred CccEEeeecC
Q 001281 1083 QLEKLFIKYC 1092 (1108)
Q Consensus 1083 ~L~~L~l~~c 1092 (1108)
+|+.|++++|
T Consensus 218 ~L~~L~l~~N 227 (308)
T 1h6u_A 218 NLFIVTLTNQ 227 (308)
T ss_dssp TCCEEEEEEE
T ss_pred CCCEEEccCC
Confidence 5555555555
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=3.5e-13 Score=143.09 Aligned_cols=173 Identities=20% Similarity=0.267 Sum_probs=119.3
Q ss_pred CcccEEEecCccccccCcchhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchhccCCCCccEEeec
Q 001281 595 KKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIE 673 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 673 (1108)
...++++++++.++.+|..+. .+|++|+|++|.++.++. .+.++++|++|++++|......|..+.++++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356788999999999988775 689999999999987754 68899999999999976544455567889999999999
Q ss_pred CCCCCCcCCcc-CCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEe
Q 001281 674 GANSLEGMPYG-MEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQW 752 (1108)
Q Consensus 674 ~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 752 (1108)
+|. +..+|.. ++.+++|+ .|++++
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~------------------------------------------------------~L~L~~ 116 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLD------------------------------------------------------KLYLGG 116 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCC------------------------------------------------------EEECCS
T ss_pred CCc-ccccChhHhcccCCCC------------------------------------------------------EEEcCC
Confidence 887 5555432 33333333 333333
Q ss_pred cCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccc-cccCCcCcceEEEEeCCCCCCCCC-CCCCCCCccEE
Q 001281 753 GSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMW-IGDLSFSKMEVLELQNCQNCTSLP-SLSMLGSLKQL 830 (1108)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 830 (1108)
|......+ ..+..+++|+.|++++|.+..+|.. +. .+++|+.|+|++|.+....+ .+..+++|+.|
T Consensus 117 N~l~~~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 117 NQLKSLPS----------GVFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp SCCCCCCT----------TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcCCCcCh----------hHhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 33211111 1134456677777777776666653 33 35788888888887765554 47778888888
Q ss_pred EecCCC
Q 001281 831 TIKGMT 836 (1108)
Q Consensus 831 ~L~~~~ 836 (1108)
++++|+
T Consensus 185 ~l~~N~ 190 (251)
T 3m19_A 185 TLFGNQ 190 (251)
T ss_dssp ECCSCC
T ss_pred EeeCCc
Confidence 888876
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=2.7e-13 Score=147.05 Aligned_cols=169 Identities=19% Similarity=0.271 Sum_probs=113.0
Q ss_pred cCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEe
Q 001281 592 PKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLD 671 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 671 (1108)
..+++|+.|++++|.++.+|. +..+++|++|++++|.++.+|. +.++++|++|++++|. +..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEE
Confidence 356778888999888888864 7888899999999998888877 8888899999998864 566655 88888899998
Q ss_pred ecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEE
Q 001281 672 IEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQ 751 (1108)
Q Consensus 672 l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 751 (1108)
+++|. +..++ .+..+++|+ .|+++
T Consensus 119 L~~n~-i~~~~-~l~~l~~L~------------------------------------------------------~L~l~ 142 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVHLPQLE------------------------------------------------------SLYLG 142 (291)
T ss_dssp CTTSC-CCCCG-GGGGCTTCC------------------------------------------------------EEECC
T ss_pred CCCCc-CCCCh-hhcCCCCCC------------------------------------------------------EEEcc
Confidence 88886 44432 233333333 33333
Q ss_pred ecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEE
Q 001281 752 WGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLT 831 (1108)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 831 (1108)
+|..... ..+..+++|+.|++++|....++. +. .+++|+.|++++|.+. .++.+..+++|+.|+
T Consensus 143 ~n~l~~~------------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~ 206 (291)
T 1h6t_A 143 NNKITDI------------TVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHIS-DLRALAGLKNLDVLE 206 (291)
T ss_dssp SSCCCCC------------GGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCC-BCGGGTTCTTCSEEE
T ss_pred CCcCCcc------------hhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCC-CChhhccCCCCCEEE
Confidence 3322110 112334556666666666555554 33 3567777777777653 345677777777777
Q ss_pred ecCCC
Q 001281 832 IKGMT 836 (1108)
Q Consensus 832 L~~~~ 836 (1108)
+++|.
T Consensus 207 l~~n~ 211 (291)
T 1h6t_A 207 LFSQE 211 (291)
T ss_dssp EEEEE
T ss_pred CcCCc
Confidence 77764
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=1.4e-12 Score=140.21 Aligned_cols=169 Identities=10% Similarity=0.130 Sum_probs=83.4
Q ss_pred cccCCcccEEeecCCCCCCCCCCC--CCCCccEEEEccCCCccc-cCCCCCcccEEEEeecCCcccc--CCCCCCCccEE
Q 001281 879 LAGFSSLRELSILKCPKFSGKLPE--LLPSLEILVISKCADLVV-PFSSFPMLCRLEIEECKGITCS--TPIDCKLIESM 953 (1108)
Q Consensus 879 ~~~~~~L~~L~l~~c~~l~~~~p~--~l~~L~~L~l~~~~~l~~-~~~~l~~L~~L~l~~c~~l~~~--~~~~l~~L~~L 953 (1108)
...+++|+.|++.+| .++ .++. .+++|+.|++++|..... .+..+++|++|++++|...... .+..+++|+.|
T Consensus 37 ~~~l~~L~~L~l~~~-~i~-~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIK-SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTS-CCC-CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCC-Ccc-cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345777888888775 343 3332 456677777776654321 2445566666666666432222 23455556666
Q ss_pred EEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc---cCCCCCccEEEEeccCCccccccccCCc-ccCC
Q 001281 954 TISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL---KQGFQQVETLRIGNSEQIKSWLQFDKPE-QGLH 1029 (1108)
Q Consensus 954 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~p-~~l~ 1029 (1108)
++++|.+..+ .+..+..+++|++|++++| .++.++ +..+++|++|++++|. +..+| ..+.
T Consensus 115 ~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~ 178 (272)
T 3rfs_A 115 VLVENQLQSL--------PDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-------LQSLPEGVFD 178 (272)
T ss_dssp ECTTSCCCCC--------CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTT
T ss_pred ECCCCcCCcc--------CHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-------cCccCHHHhc
Confidence 6555544322 1222334555555555554 233332 2344555555555554 22222 2344
Q ss_pred CCCCCcEeEeeccCccccccccc-cccCCCcceEecccc
Q 001281 1030 VLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENS 1067 (1108)
Q Consensus 1030 ~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c 1067 (1108)
.+++|++|+++ .+.++.++.. +..+++|+.|++++|
T Consensus 179 ~l~~L~~L~L~--~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 179 KLTQLKDLRLY--QNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCTTCCEEECC--SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCCEEECC--CCcCCccCHHHHhCCcCCCEEEccCC
Confidence 55555555554 3344444432 234555555555544
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=4.8e-13 Score=147.04 Aligned_cols=193 Identities=14% Similarity=0.092 Sum_probs=135.3
Q ss_pred CCcccEEeecCCCCCCCCCCC-----CCCCccEEEEccCCCcc-------ccCCCCCcccEEEEeecCCccc--cCCCCC
Q 001281 882 FSSLRELSILKCPKFSGKLPE-----LLPSLEILVISKCADLV-------VPFSSFPMLCRLEIEECKGITC--STPIDC 947 (1108)
Q Consensus 882 ~~~L~~L~l~~c~~l~~~~p~-----~l~~L~~L~l~~~~~l~-------~~~~~l~~L~~L~l~~c~~l~~--~~~~~l 947 (1108)
+++|++|++++| .+++..|. .+++|++|++++|.... ..+..+++|++|++++|..... ..+..+
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 455777777775 44444443 25667777777776543 1223477888888888874332 345678
Q ss_pred CCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc------cCCCCCccEEEEeccCCccccccc
Q 001281 948 KLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL------KQGFQQVETLRIGNSEQIKSWLQF 1021 (1108)
Q Consensus 948 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~l~~L~~L~l~~~~~l~~~~~~ 1021 (1108)
++|++|++++|.+....... .+..+..+++|++|++++|. ++.++ ...+++|++|++++|.. .
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~----~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l------~ 237 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLM----AALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSL------R 237 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHH----TTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCC------C
T ss_pred CCCCEEECCCCCCccchhhh----HHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCC------C
Confidence 88888988888754311100 01122367889999998874 44333 25679999999999984 3
Q ss_pred cCCcccCCCC---CCCcEeEeeccCccccccccccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1022 DKPEQGLHVL---SSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1022 ~~~p~~l~~l---~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
...|..+..+ ++|++|+++ .|.++.+|..+. ++|++|++++| .++.+|. +..+++|+.|++++++
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls--~N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~--~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLS--FAGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ--PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECC--SSCCCSCCSCCC--SCCSCEECCSC-CCCSCCC--TTSCCCCSCEECSSTT
T ss_pred ccchhhHHhccCcCcCCEEECC--CCCCCchhhhhc--CCCCEEECCCC-cCCCCch--hhhCCCccEEECcCCC
Confidence 3347666665 799999998 788999998764 89999999885 7888876 6789999999999985
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=1.6e-14 Score=164.44 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=59.7
Q ss_pred hhhccCCCcccEEEecCccccc-----cCcchhcCCCCcEEEeeCcccc----ccchhh-------hcCccCcEeeecCC
Q 001281 588 SDMLPKFKKLRVLSLEGYYVTQ-----LPNSIKELKLLRYLNVAGTQIR----SLPEST-------SSLMHLRVLILRDC 651 (1108)
Q Consensus 588 ~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~Ls~~~i~----~lp~~i-------~~L~~L~~L~l~~~ 651 (1108)
...+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3445667778888888877663 3344667778888888776444 234443 57778888888876
Q ss_pred cCCc----ccchhccCCCCccEEeecCCC
Q 001281 652 SRLT----RLPSKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 652 ~~~~----~lp~~i~~L~~L~~L~l~~~~ 676 (1108)
.... .+|..+.++++|++|+|++|.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 5433 366677777888888887776
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=8.2e-13 Score=157.29 Aligned_cols=97 Identities=18% Similarity=0.330 Sum_probs=66.4
Q ss_pred cCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEe
Q 001281 592 PKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLD 671 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 671 (1108)
..++.|+.|++++|.+..+| .+..+++|++|+|++|.+..+|. +.++++|+.|+|++|. +..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 34567777778877777776 47777888888888887777766 7777888888887764 55555 477777888888
Q ss_pred ecCCCCCCcCCccCCCCCCCCcc
Q 001281 672 IEGANSLEGMPYGMEKLKHLQTL 694 (1108)
Q Consensus 672 l~~~~~~~~lp~~i~~L~~L~~L 694 (1108)
|++|. +..+| .+..+++|+.|
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESL 136 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEE
T ss_pred ecCCC-CCCCc-cccCCCccCEE
Confidence 77776 44432 34444444444
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=6e-14 Score=156.71 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=93.0
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccc--cCcchhcCCCCcEEEeeCcccc-ccchhhhc
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQ--LPNSIKELKLLRYLNVAGTQIR-SLPESTSS 639 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~l~~L~~L~Ls~~~i~-~lp~~i~~ 639 (1108)
++++.+.+.++... ..++. +.++++|++|+|++|.++. +|..+..+++|++|++++|.++ ..|..+++
T Consensus 70 ~~l~~L~l~~n~l~--------~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRSFMD--------QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTTCEEC--------SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEcCCcccc--------ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 67888877655431 11222 4578999999999999873 7888999999999999999988 67888999
Q ss_pred CccCcEeeecCCcCCc--ccchhccCCCCccEEeecCCCCCCc--CCccCCCCC-CCCcc
Q 001281 640 LMHLRVLILRDCSRLT--RLPSKMWNLINLRHLDIEGANSLEG--MPYGMEKLK-HLQTL 694 (1108)
Q Consensus 640 L~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~i~~L~-~L~~L 694 (1108)
+++|++|++++|..+. .+|..+.++++|++|++++|..+.. +|..+..++ +|++|
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 9999999999986565 3777789999999999999932442 333344444 44443
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=4.2e-14 Score=161.09 Aligned_cols=244 Identities=17% Similarity=0.143 Sum_probs=151.7
Q ss_pred cccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccc----ccCcch-------hcCCCCcEEEee
Q 001281 558 SLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVT----QLPNSI-------KELKLLRYLNVA 626 (1108)
Q Consensus 558 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~----~lp~~i-------~~l~~L~~L~Ls 626 (1108)
.+..+++|+.|.+.++... ......+...+..+++|++|+|++|.+. .+|..+ ..+++|++|+|+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~----~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIG----TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHHHCSCCCEEECTTSEEC----HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHhcCCCccEEECCCCCCC----HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4556778888887665431 1112234456778899999999987654 334444 678999999999
Q ss_pred Cccccc-----cchhhhcCccCcEeeecCCcCCc----ccchhccCC---------CCccEEeecCCCCCC--cCC---c
Q 001281 627 GTQIRS-----LPESTSSLMHLRVLILRDCSRLT----RLPSKMWNL---------INLRHLDIEGANSLE--GMP---Y 683 (1108)
Q Consensus 627 ~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~----~lp~~i~~L---------~~L~~L~l~~~~~~~--~lp---~ 683 (1108)
+|.+.. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|. +. .+| .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH
Confidence 998885 78888999999999999986432 233334444 899999999887 43 233 2
Q ss_pred cCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhh
Q 001281 684 GMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEV 763 (1108)
Q Consensus 684 ~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 763 (1108)
.+..+++|++|...... +. ........+..+..+++|+.|+|++|....
T Consensus 182 ~l~~~~~L~~L~L~~n~------l~-------------------~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~------ 230 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNG------IR-------------------PEGIEHLLLEGLAYCQELKVLDLQDNTFTH------ 230 (386)
T ss_dssp HHHHCTTCCEEECCSSC------CC-------------------HHHHHHHHHTTGGGCTTCCEEECCSSCCHH------
T ss_pred HHHhCCCcCEEECcCCC------CC-------------------HhHHHHHHHHHhhcCCCccEEECcCCCCCc------
Confidence 34445555555311100 00 000111222356667788888887775310
Q ss_pred hhhhhhhcCCCCCCCCCeEEEeecCCCCC-----ccccccCCcCcceEEEEeCCCCCC----CCC-CC-CCCCCccEEEe
Q 001281 764 AKEHTVLDMLQPHTNLKKLAITSYSGENF-----PMWIGDLSFSKMEVLELQNCQNCT----SLP-SL-SMLGSLKQLTI 832 (1108)
Q Consensus 764 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~----~l~-~l-~~l~~L~~L~L 832 (1108)
.........+..+++|+.|++++|.+... |.++....+++|+.|+|++|.+.. .+| .+ .++++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 01122333455667888888888776543 444432235788888888887765 244 23 55788888888
Q ss_pred cCCCC
Q 001281 833 KGMTR 837 (1108)
Q Consensus 833 ~~~~~ 837 (1108)
++|..
T Consensus 311 ~~N~l 315 (386)
T 2ca6_A 311 NGNRF 315 (386)
T ss_dssp TTSBS
T ss_pred cCCcC
Confidence 88763
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=9e-12 Score=132.12 Aligned_cols=169 Identities=14% Similarity=0.192 Sum_probs=94.5
Q ss_pred CcccEEeecCCCCCCCCCCCCC-CCccEEEEccCCCccc---cCCCCCcccEEEEeecCCccc--cCCCCCCCccEEEEe
Q 001281 883 SSLRELSILKCPKFSGKLPELL-PSLEILVISKCADLVV---PFSSFPMLCRLEIEECKGITC--STPIDCKLIESMTIS 956 (1108)
Q Consensus 883 ~~L~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~l~~---~~~~l~~L~~L~l~~c~~l~~--~~~~~l~~L~~L~l~ 956 (1108)
+..+.++++++ .++ .+|..+ ++++.|++++|..... .+..+++|++|++++|..... ..+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~-~l~-~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGK-SLD-SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTC-CCS-SCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCC-Ccc-ccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45677888773 664 666543 4678888887765432 234455666666665542221 123344445555444
Q ss_pred cCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCCCccEEEEeccCCccccccccCCcc-cCCCCCCCc
Q 001281 957 NSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPEQ-GLHVLSSPE 1035 (1108)
Q Consensus 957 ~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~-~l~~l~~L~ 1035 (1108)
+|.+..+ .+.. +..+++|++|++++|. +..+|. .+..+++|+
T Consensus 92 ~n~l~~~--------~~~~----------------------~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 92 NNQLASL--------PLGV----------------------FDHLTQLDKLYLGGNQ-------LKSLPSGVFDRLTKLK 134 (251)
T ss_dssp TSCCCCC--------CTTT----------------------TTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCC
T ss_pred CCccccc--------ChhH----------------------hcccCCCCEEEcCCCc-------CCCcChhHhccCCccc
Confidence 4443321 1111 2445666666666665 333433 356666666
Q ss_pred EeEeeccCcccccccc-ccccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1036 DVSIEENCMSLVSFSE-VIFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1036 ~L~l~~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
+|+++ .+.++.+|. .+..+++|++|+++++ .++.+|...+..+++|++|++++|+
T Consensus 135 ~L~Ls--~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 135 ELRLN--TNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EEECC--SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEECc--CCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 66665 556666665 3445666666666663 5666665556666667777766654
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=1.5e-12 Score=152.99 Aligned_cols=182 Identities=18% Similarity=0.215 Sum_probs=128.3
Q ss_pred cccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCC
Q 001281 596 KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGA 675 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 675 (1108)
+|++|+|++|.++.+|..+. ++|++|+|++|.|+.+| +.+++|++|++++|. +..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCC
Confidence 78999999999988887763 78999999999999888 567899999999874 566887 665 8999999988
Q ss_pred CCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCC
Q 001281 676 NSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQ 755 (1108)
Q Consensus 676 ~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 755 (1108)
. +..+|. .+++|+.|+..... + ..+ +. .+++|+.|++++|..
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N~------l------~~l-------------------p~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNNQ------L------TML-------------------PE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSSC------C------SCC-------------------CC---CCTTCCEEECCSSCC
T ss_pred c-CCCCCC---cCccccEEeCCCCc------c------CcC-------------------CC---cCCCcCEEECCCCCC
Confidence 7 666776 45666666321100 0 000 00 246788888887764
Q ss_pred CCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcc-------eEEEEeCCCCCCCCCCCCCCCCcc
Q 001281 756 FDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKM-------EVLELQNCQNCTSLPSLSMLGSLK 828 (1108)
Q Consensus 756 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~~l~~l~~L~ 828 (1108)
... ..+. ++|+.|++++|.+..+|. +. .+| +.|+|++|.+....+.+..+++|+
T Consensus 173 ~~l------------p~l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 173 TFL------------PELP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233 (571)
T ss_dssp SCC------------CCCC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTE
T ss_pred CCc------------chhh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCCCCC
Confidence 321 1122 788889998888888887 43 256 899999988765333477789999
Q ss_pred EEEecCCCCceeeCc
Q 001281 829 QLTIKGMTRLKSIGS 843 (1108)
Q Consensus 829 ~L~L~~~~~l~~i~~ 843 (1108)
.|+|++|.....++.
T Consensus 234 ~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 234 TIILEDNPLSSRIRE 248 (571)
T ss_dssp EEECCSSSCCHHHHH
T ss_pred EEEeeCCcCCCcCHH
Confidence 999988875554443
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3.5e-11 Score=136.88 Aligned_cols=297 Identities=13% Similarity=0.010 Sum_probs=178.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccc----ccc-cceeEEEEeCCCC-CHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVS----DIK-FDIKAWVCVSDEF-DVL 256 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~~~~~-~~~ 256 (1108)
+..++||+++++++..++..... +...+.+.|+|++|+||||+|+.+++..... ... ....+|+++.... +..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK-NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT-TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 36799999999999887754111 1224689999999999999999999864211 001 3356788877766 888
Q ss_pred HHHHHHHHHhcCCCC--CcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHH-HhhhccCCCCcEEEEecCchhhh
Q 001281 257 SISMALLESITCKPC--DLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDL-KAPFLAAAPNSKIIVTTRHSHVA 333 (1108)
Q Consensus 257 ~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtR~~~v~ 333 (1108)
.++..++.++..... ......+....+.+.+..++.+||+||++.-....+... ...+.....+..||+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888888888843222 122245566677777877666999999944211111122 22222222678899999875321
Q ss_pred hhc------cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcC---CchH-HHHHHHhhh--cC-
Q 001281 334 STM------GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCR---GLPL-AAKTLGGLL--RT- 400 (1108)
Q Consensus 334 ~~~------~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l--~~- 400 (1108)
..+ .-...+.+++++.++..+++...+........ +.++....+++.++ |.|. |+..+.... +.
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT---YDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS---CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC---cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 11137999999999999999987531111001 11256778888888 8876 444333322 21
Q ss_pred --CCChhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHHHHhHhcccCCCceechHHHHHHHHHcCCccCCCCchh
Q 001281 401 --KHGDNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKRCFAYCAIFPKDYELKEKELVFLWMAEGIIQQPRNNKQ 478 (1108)
Q Consensus 401 --~~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 478 (1108)
.-+.+.+..++... ....+..+++.|+++.+..+..++....+-.+. ......--..| +.+ .
T Consensus 255 ~~~i~~~~v~~~~~~~---------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~-----~ 318 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDY---------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP-----L 318 (384)
T ss_dssp SSCCCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC-----C
T ss_pred CCccCHHHHHHHHHHH---------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC-----C
Confidence 22356666665542 124566778999998888877777611101111 11111111223 111 1
Q ss_pred HHHHHHHHHHHHHhCcccccc
Q 001281 479 LEDWGSECFHDLVSRSIFQQS 499 (1108)
Q Consensus 479 ~~~~~~~~~~~L~~~~li~~~ 499 (1108)
.......++..|...++++..
T Consensus 319 ~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 319 SYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEE
Confidence 234567889999999999764
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.2e-12 Score=139.59 Aligned_cols=167 Identities=24% Similarity=0.261 Sum_probs=121.3
Q ss_pred CCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 593 KFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
.+..+..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++|. +..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 4566777888999988887 6888999999999999999888 78899999999999864 667776 889999999999
Q ss_pred cCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEe
Q 001281 673 EGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQW 752 (1108)
Q Consensus 673 ~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 752 (1108)
++|. +..+|.... + +|+.|++++
T Consensus 93 ~~N~-l~~l~~~~~--~------------------------------------------------------~L~~L~L~~ 115 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--A------------------------------------------------------CLSRLFLDN 115 (263)
T ss_dssp CSSC-CSCCTTCCC--S------------------------------------------------------SCCEEECCS
T ss_pred CCCc-cCCcCcccc--C------------------------------------------------------cccEEEccC
Confidence 9887 555542111 2 333344443
Q ss_pred cCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEe
Q 001281 753 GSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTI 832 (1108)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 832 (1108)
|.... +..+..+++|+.|++++|.+..+| .+. .+++|+.|++++|.+... +.+..+++|+.|++
T Consensus 116 N~l~~------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 116 NELRD------------TDSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179 (263)
T ss_dssp SCCSB------------SGGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEE
T ss_pred CccCC------------ChhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeC
Confidence 33211 012444566777777777766665 333 357889999998887554 77888889999999
Q ss_pred cCCC
Q 001281 833 KGMT 836 (1108)
Q Consensus 833 ~~~~ 836 (1108)
++|.
T Consensus 180 ~~N~ 183 (263)
T 1xeu_A 180 TGQK 183 (263)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 8875
No 108
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.33 E-value=6.2e-11 Score=135.08 Aligned_cols=298 Identities=12% Similarity=-0.006 Sum_probs=180.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
+..++||+++++++..++...-. ....+.+.|+|++|+||||+|+.+++...... ..-...+|+++....+...++
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR-GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS-SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 36799999999999998843211 12356889999999999999999998642210 002346788888888888999
Q ss_pred HHHHHHhcCCCCC-cccHHHHHHHHHHHh--CCceEEEEEeCCCCCChh--hHHHHHhhhccC-----CCCcEEEEecCc
Q 001281 260 MALLESITCKPCD-LKALNEVQVQLQKAL--DGKKFLLVLDDVWNENYS--LWEDLKAPFLAA-----APNSKIIVTTRH 329 (1108)
Q Consensus 260 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~iivTtR~ 329 (1108)
..++.+++..... .....+....+.+.+ .+++.+||+|+++.-... ..+.+...+... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 9999999764332 223455556666666 456899999999543211 222333222221 456678888876
Q ss_pred hhhhhhc-----c--ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcC---CchH-HHHHHHhhh
Q 001281 330 SHVASTM-----G--SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCR---GLPL-AAKTLGGLL 398 (1108)
Q Consensus 330 ~~v~~~~-----~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l 398 (1108)
......+ . ....+.+++++.++..+++...+....... .+.++....+++.++ |.|- ++..+....
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG---VLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT---TBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC---CCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5321111 1 114789999999999999988753210000 111256678888888 9994 333332222
Q ss_pred c-----CC--CChhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHHHHhHhc-ccCCCceechHHHHHHHH----H
Q 001281 399 R-----TK--HGDNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKRCFAYCA-IFPKDYELKEKELVFLWM----A 466 (1108)
Q Consensus 399 ~-----~~--~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~i~~~~li~~w~----a 466 (1108)
. .. -+.+.+..++... ....+.-++..++++.+..+..++ ++.....+....+.+... .
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEI---------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 1 11 1345555555432 123456678899999888777666 443222444443333322 1
Q ss_pred cCCccCCCCchhHHHHHHHHHHHHHhCcccccc
Q 001281 467 EGIIQQPRNNKQLEDWGSECFHDLVSRSIFQQS 499 (1108)
Q Consensus 467 ~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~ 499 (1108)
.| +.+ .....+..++++|...|+++..
T Consensus 325 ~~-~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 325 LG-LEH-----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cC-CCC-----CCHHHHHHHHHHHHhCCCeEEE
Confidence 23 111 1235677899999999999864
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.31 E-value=7.4e-12 Score=135.68 Aligned_cols=172 Identities=13% Similarity=0.173 Sum_probs=116.0
Q ss_pred cccCCcccEEeecCCCCCCCCCCC--CCCCccEEEEccCCCccc-cCCCCCcccEEEEeecCCccccCCCCCCCccEEEE
Q 001281 879 LAGFSSLRELSILKCPKFSGKLPE--LLPSLEILVISKCADLVV-PFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTI 955 (1108)
Q Consensus 879 ~~~~~~L~~L~l~~c~~l~~~~p~--~l~~L~~L~l~~~~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l 955 (1108)
...+++|+.|++++| .++ .++. .+++|+.|++++|..... .+..+++|++|++++|.......+..+++|+.|++
T Consensus 42 ~~~l~~L~~L~l~~~-~i~-~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIK-SVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHHTCCEEECTTS-CCC-CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhhcCcccEEEccCC-Ccc-cChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 346788999999886 453 3443 467888888888875442 25677888888888887555556677788888888
Q ss_pred ecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc-cCCCCCccEEEEeccCCccccccccCCcccCCCCCCC
Q 001281 956 SNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL-KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSP 1034 (1108)
Q Consensus 956 ~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L 1034 (1108)
++|.+..+. .+..+++|+.|++++|. ++.++ +..+++|++|++++|. +..++. +..+++|
T Consensus 120 ~~n~i~~~~----------~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~-------l~~~~~-l~~l~~L 180 (291)
T 1h6t_A 120 EHNGISDIN----------GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-------ISDIVP-LAGLTKL 180 (291)
T ss_dssp TTSCCCCCG----------GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-------CCCCGG-GTTCTTC
T ss_pred CCCcCCCCh----------hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCc-------cccchh-hcCCCcc
Confidence 877766531 23367777777777753 33333 5667777777777776 444444 7777777
Q ss_pred cEeEeeccCccccccccccccCCCcceEecccccCCCCCcc
Q 001281 1035 EDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQ 1075 (1108)
Q Consensus 1035 ~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 1075 (1108)
++|+++ .+.++.+|. +..+++|+.|++++| .+...|.
T Consensus 181 ~~L~L~--~N~i~~l~~-l~~l~~L~~L~l~~n-~i~~~~~ 217 (291)
T 1h6t_A 181 QNLYLS--KNHISDLRA-LAGLKNLDVLELFSQ-ECLNKPI 217 (291)
T ss_dssp CEEECC--SSCCCBCGG-GTTCTTCSEEEEEEE-EEECCCE
T ss_pred CEEECC--CCcCCCChh-hccCCCCCEEECcCC-cccCCcc
Confidence 777776 556777765 445777777777764 4554444
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=2e-11 Score=143.40 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=95.2
Q ss_pred cccEEeecCCCCCCCCCCC-CCCCccEEEEccCCCccccCCCCCcccEEEEeecCCccccCCCCCCCccEEEEecCCccc
Q 001281 884 SLRELSILKCPKFSGKLPE-LLPSLEILVISKCADLVVPFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTISNSSLQI 962 (1108)
Q Consensus 884 ~L~~L~l~~c~~l~~~~p~-~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~n~~~~ 962 (1108)
+|+.|++++| .+++ +|. .+++|+.|++++|.....+ ..+++|+.|++++|.....+.+ ..+|+.|++++|.+..
T Consensus 60 ~L~~L~Ls~n-~L~~-lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~l--~~~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRL-NLSS-LPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPEL--PASLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSS-CCSC-CCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC
T ss_pred CccEEEeCCC-CCCc-cCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcchh--hcCCCEEECCCCcCCC
Confidence 5555655553 3432 443 3345666666665544333 3455666666666543322221 1266666666665543
Q ss_pred ccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeecc
Q 001281 963 YGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEEN 1042 (1108)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 1042 (1108)
+. . .+++|+.|+++++. ++.++. .+++|++|++++|. +..+|. +. ++|+.|+++
T Consensus 135 lp---------~---~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~-------L~~lp~-l~--~~L~~L~Ls-- 188 (571)
T 3cvr_A 135 LP---------E---LPALLEYINADNNQ-LTMLPE-LPTSLEVLSVRNNQ-------LTFLPE-LP--ESLEALDVS-- 188 (571)
T ss_dssp CC---------C---CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSC-------CSCCCC-CC--TTCCEEECC--
T ss_pred CC---------C---cCccccEEeCCCCc-cCcCCC-cCCCcCEEECCCCC-------CCCcch-hh--CCCCEEECc--
Confidence 21 1 35566666666543 334443 55667777777766 445555 44 667777776
Q ss_pred CccccccccccccCCCc-------ceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1043 CMSLVSFSEVIFLMNNL-------RYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1043 c~~l~~lp~~~~~l~~L-------~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
.|.++.+|. +. .+| +.|++++| .|+.+|. .+..+++|+.|++++|+
T Consensus 189 ~N~L~~lp~-~~--~~L~~~~~~L~~L~Ls~N-~l~~lp~-~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 189 TNLLESLPA-VP--VRNHHSEETEIFFRCREN-RITHIPE-NILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSCCSSCCC-CC----------CCEEEECCSS-CCCCCCG-GGGGSCTTEEEECCSSS
T ss_pred CCCCCchhh-HH--HhhhcccccceEEecCCC-cceecCH-HHhcCCCCCEEEeeCCc
Confidence 556666666 32 255 77777663 5666766 34446777777777765
No 111
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=3.6e-10 Score=128.80 Aligned_cols=297 Identities=12% Similarity=0.010 Sum_probs=184.4
Q ss_pred CceeccchhHHHHHHHHhCCCC-CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDP-SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
..++||+++++++..++..... .....+.+.|+|++|+||||+|+.+++...... -...+|++++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999988864210 111234899999999999999999998653210 1246778877878888899999
Q ss_pred HHHhcCCCCC-cccHHHHHHHHHHHh--CCceEEEEEeCCCCCChhhHHHHHhhhccCC----CCcEEEEecCchhhhhh
Q 001281 263 LESITCKPCD-LKALNEVQVQLQKAL--DGKKFLLVLDDVWNENYSLWEDLKAPFLAAA----PNSKIIVTTRHSHVAST 335 (1108)
Q Consensus 263 ~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~v~~~ 335 (1108)
+..++..... .....+....+.+.+ .+++.+||+|+++.-+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888754321 223445555555554 3668999999997665555666655553211 47788888876543322
Q ss_pred cc-------ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhc---------CCchHHHHHHHhh-h
Q 001281 336 MG-------SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKC---------RGLPLAAKTLGGL-L 398 (1108)
Q Consensus 336 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPLai~~~~~~-l 398 (1108)
+. ....+.+.+++.++..+++...+....... .+.++....|++.+ +|.|..+..+... .
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG---SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT---SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 21 113699999999999999987753211100 12226778899999 7887544433322 1
Q ss_pred --c---CC--CChhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHHHHhHhcccC---CCceechHHHHHHHHH--
Q 001281 399 --R---TK--HGDNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKRCFAYCAIFP---KDYELKEKELVFLWMA-- 466 (1108)
Q Consensus 399 --~---~~--~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~i~~~~li~~w~a-- 466 (1108)
+ .. -+.+....+..... ... +.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~-----~~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL-----FGI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS-----CCC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh-----hhh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 1 11 12233333333211 111 23346788988888888777654 2224555666554433
Q ss_pred --cCCccCCCCchhHHHHHHHHHHHHHhCccccccC
Q 001281 467 --EGIIQQPRNNKQLEDWGSECFHDLVSRSIFQQSS 500 (1108)
Q Consensus 467 --~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~~ 500 (1108)
.|... ........++.+|...++|....
T Consensus 323 ~~~~~~~------~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 323 EEYGERP------RVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHTTCCC------CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHcCCCC------CCHHHHHHHHHHHHhCCCeEEee
Confidence 23111 01345678999999999998743
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=1.4e-11 Score=125.02 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcccCCCccc--ccCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCcccccccccccc
Q 001281 978 SKSLPTSVTISNVLEFGKF--LKQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEVIFL 1055 (1108)
Q Consensus 978 ~~~~L~~L~l~~c~~l~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~ 1055 (1108)
.+++|++|++++|..-... .+..+++|++|++++|.. ....|..+..+++|++|+++ +|..++.+| .+..
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i------~~~~~~~l~~l~~L~~L~L~-~n~~i~~~~-~l~~ 157 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH------DDSILTKINTLPKVNSIDLS-YNGAITDIM-PLKT 157 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC------BGGGHHHHTTCSSCCEEECC-SCTBCCCCG-GGGG
T ss_pred cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc------CcHhHHHHhhCCCCCEEEcc-CCCCccccH-hhcC
Confidence 4555666666554322211 146678888888888874 33467778889999999998 555588887 4556
Q ss_pred CCCcceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1056 MNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1056 l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
+++|++|++++| .++.++ .+..+++|++|++++++
T Consensus 158 l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 158 LPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC-
T ss_pred CCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCcc
Confidence 899999999886 677777 47788999999999875
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.28 E-value=1.6e-11 Score=126.98 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=67.1
Q ss_pred cEEEecCccccccCcchhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCC
Q 001281 598 RVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 598 r~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 676 (1108)
+.++++++.++.+|..+. .+|++|++++|.|+.+|. .+..+++|++|+|++|......|..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578888888988887765 689999999999988865 68889999999999876544557788899999999998887
Q ss_pred CCCcCCc
Q 001281 677 SLEGMPY 683 (1108)
Q Consensus 677 ~~~~lp~ 683 (1108)
+..+|.
T Consensus 92 -l~~l~~ 97 (220)
T 2v9t_B 92 -ITELPK 97 (220)
T ss_dssp -CCCCCT
T ss_pred -CCccCH
Confidence 555554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=4.6e-12 Score=128.66 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=46.7
Q ss_pred CcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecC
Q 001281 595 KKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEG 674 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 674 (1108)
++|+.|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 44555555555555544 3555555555555555444332 444555555555555433333444455555555555555
Q ss_pred CCCCCcCCccCCCCCCCCcc
Q 001281 675 ANSLEGMPYGMEKLKHLQTL 694 (1108)
Q Consensus 675 ~~~~~~lp~~i~~L~~L~~L 694 (1108)
|......|..++.+++|+.|
T Consensus 122 n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEE
T ss_pred CccCcHhHHHHhhCCCCCEE
Confidence 54222233334444444444
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=3.5e-11 Score=125.25 Aligned_cols=82 Identities=26% Similarity=0.309 Sum_probs=64.1
Q ss_pred ccEEEecCccccccCcchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccch-hccCCCCccEEeecC
Q 001281 597 LRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLDIEG 674 (1108)
Q Consensus 597 Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~ 674 (1108)
-+.++.+++.++.+|..+. ++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|. .+..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 4568888888888887664 7899999999998877 5678888999999998865 566664 467888899999888
Q ss_pred CCCCCcCC
Q 001281 675 ANSLEGMP 682 (1108)
Q Consensus 675 ~~~~~~lp 682 (1108)
|. +..+|
T Consensus 98 N~-l~~l~ 104 (229)
T 3e6j_A 98 NQ-LTVLP 104 (229)
T ss_dssp SC-CCCCC
T ss_pred Cc-CCccC
Confidence 86 54443
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=8.6e-13 Score=148.48 Aligned_cols=213 Identities=11% Similarity=0.083 Sum_probs=120.9
Q ss_pred hhhhhccCCCcccEEEecCccccccC-----cchhcCC-CCcEEEeeCcccccc-chhhhcC-----ccCcEeeecCCcC
Q 001281 586 LLSDMLPKFKKLRVLSLEGYYVTQLP-----NSIKELK-LLRYLNVAGTQIRSL-PESTSSL-----MHLRVLILRDCSR 653 (1108)
Q Consensus 586 ~~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~l~-~L~~L~Ls~~~i~~l-p~~i~~L-----~~L~~L~l~~~~~ 653 (1108)
.++.++...++|++|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|++++|..
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 34455556666888888888888764 5667777 888888888888755 4555554 8888888888764
Q ss_pred Ccccchh----ccCC-CCccEEeecCCCCCCcCCcc-----CCC-CCCCCccCceeeCCCCCCCccccccccccCceeEe
Q 001281 654 LTRLPSK----MWNL-INLRHLDIEGANSLEGMPYG-----MEK-LKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCI 722 (1108)
Q Consensus 654 ~~~lp~~----i~~L-~~L~~L~l~~~~~~~~lp~~-----i~~-L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i 722 (1108)
....+.. +..+ ++|++|++++|. +...+.. +.. .++|++|+..
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls------------------------- 146 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLR------------------------- 146 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECT-------------------------
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEcc-------------------------
Confidence 3344443 3344 788888888887 4444321 112 1244443210
Q ss_pred cCccCCCChh----hhhhhccCCCC-CCCceEEEecCCCCCChhhhhhhhhhhcCCCCC-CCCCeEEEeecCCCC-----
Q 001281 723 SGLQNVNDLR----EAGEAMLCEKQ-NLQALSLQWGSQFDSSREEVAKEHTVLDMLQPH-TNLKKLAITSYSGEN----- 791 (1108)
Q Consensus 723 ~~l~~~~~~~----~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~----- 791 (1108)
.+.+. ......+...+ +|+.|++++|......... ....+... ++|+.|++++|.+..
T Consensus 147 -----~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~------l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 147 -----GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE------LAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp -----TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH------HHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred -----CCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH------HHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 11111 12222233333 6777777766543222211 11122233 477777777776554
Q ss_pred CccccccCCcCcceEEEEeCCCCCCCCC-----CCCCCCCccEEEecCCC
Q 001281 792 FPMWIGDLSFSKMEVLELQNCQNCTSLP-----SLSMLGSLKQLTIKGMT 836 (1108)
Q Consensus 792 ~p~~~~~~~l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~~ 836 (1108)
++..+... .++|+.|+|++|.+....+ .+..+++|+.|++++|.
T Consensus 216 l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 216 LAYIFSSI-PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHHS-CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHhcC-CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 34333321 2467777777776644322 24566777777777664
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=7.9e-11 Score=134.14 Aligned_cols=298 Identities=15% Similarity=0.058 Sum_probs=174.5
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
+..|+||+++++.+.+++...-. ....+.+.|+|++|+||||||+.+++........-...+|+.+....+...++..+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~-~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR-EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG-TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 46799999999999998864210 12346889999999999999999998643210002346788877767777888888
Q ss_pred HHHhcCCCCC-cccHHHHHHHHHHHhC--CceEEEEEeCCCCCC----hhhHHHHHhhhcc-CCCCcEEEEecCchhhhh
Q 001281 263 LESITCKPCD-LKALNEVQVQLQKALD--GKKFLLVLDDVWNEN----YSLWEDLKAPFLA-AAPNSKIIVTTRHSHVAS 334 (1108)
Q Consensus 263 ~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 334 (1108)
+..++..... .....+....+.+.+. +++.+||+|+++.-. ...+..+...+.. ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 8877654321 1234444555555553 458999999984421 2334444433322 234567788887654322
Q ss_pred hcc-----c--cceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcC---CchHHHHH-HHhhh--c--
Q 001281 335 TMG-----S--VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCR---GLPLAAKT-LGGLL--R-- 399 (1108)
Q Consensus 335 ~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPLai~~-~~~~l--~-- 399 (1108)
.+. . ...+.+++++.++..+++...+........ ..++....+++.++ |.|..+.. +.... +
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGV---LPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSC---SCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 221 1 147999999999999999876531111111 11256677888887 99884433 32221 1
Q ss_pred -C--CCChhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHHHHhHhcccCC-C-ceechHHHHHHH--HH--cCCc
Q 001281 400 -T--KHGDNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKRCFAYCAIFPK-D-YELKEKELVFLW--MA--EGII 470 (1108)
Q Consensus 400 -~--~~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~-~-~~i~~~~li~~w--~a--~g~i 470 (1108)
. .-+.+.+..++... ....+.-++..+|+..+..+..++...+ + ..+....+.+.. ++ .| +
T Consensus 255 ~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~ 324 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI---------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-V 324 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH---------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-C
T ss_pred cCCCccCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-C
Confidence 1 11244444444331 1234666778899888887777764322 1 123333332221 11 12 1
Q ss_pred cCCCCchhHHHHHHHHHHHHHhCcccccc
Q 001281 471 QQPRNNKQLEDWGSECFHDLVSRSIFQQS 499 (1108)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~L~~~~li~~~ 499 (1108)
.+ ........+++.|...++++..
T Consensus 325 ~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 11 1124566789999999999763
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=1.6e-11 Score=126.10 Aligned_cols=81 Identities=25% Similarity=0.374 Sum_probs=49.2
Q ss_pred cEEEecCccccccCcchhcCCCCcEEEeeCccccccchh-hhcCccCcEeeecCCcCCcccch-hccCCCCccEEeecCC
Q 001281 598 RVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPES-TSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLDIEGA 675 (1108)
Q Consensus 598 r~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~ 675 (1108)
+.++.+++.++.+|..+ .++|++|++++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC
Confidence 35566666666666544 34677777777777666543 4667777777777654 344443 3466677777777666
Q ss_pred CCCCcCC
Q 001281 676 NSLEGMP 682 (1108)
Q Consensus 676 ~~~~~lp 682 (1108)
. +..+|
T Consensus 87 ~-l~~~~ 92 (208)
T 2o6s_A 87 Q-LQSLP 92 (208)
T ss_dssp C-CCCCC
T ss_pred c-CCccC
Confidence 5 44443
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=1.4e-11 Score=146.64 Aligned_cols=172 Identities=13% Similarity=0.171 Sum_probs=130.8
Q ss_pred cccCCcccEEeecCCCCCCCCCCC--CCCCccEEEEccCCCccc-cCCCCCcccEEEEeecCCccccCCCCCCCccEEEE
Q 001281 879 LAGFSSLRELSILKCPKFSGKLPE--LLPSLEILVISKCADLVV-PFSSFPMLCRLEIEECKGITCSTPIDCKLIESMTI 955 (1108)
Q Consensus 879 ~~~~~~L~~L~l~~c~~l~~~~p~--~l~~L~~L~l~~~~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l 955 (1108)
...+++|+.|++++| .+. .+|. .+++|+.|++++|..... ++..+++|+.|++++|.......+..+++|+.|++
T Consensus 39 ~~~L~~L~~L~l~~n-~i~-~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIK-SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCC-CCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred hhcCCCCCEEECcCC-CCC-CChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 456889999999986 454 4443 578999999999875543 36678899999999998666667788899999999
Q ss_pred ecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccc-cCCCCCccEEEEeccCCccccccccCCcccCCCCCCC
Q 001281 956 SNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL-KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSP 1034 (1108)
Q Consensus 956 ~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L 1034 (1108)
++|.+..+. .+..+++|+.|+|++|. +..++ +..+++|+.|+|++|. +..++. +..+++|
T Consensus 117 s~N~l~~l~----------~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-------l~~~~~-l~~l~~L 177 (605)
T 1m9s_A 117 EHNGISDIN----------GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-------ISDIVP-LAGLTKL 177 (605)
T ss_dssp TTSCCCCCG----------GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSC-------CCCCGG-GTTCTTC
T ss_pred cCCCCCCCc----------cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCc-------CCCchh-hccCCCC
Confidence 988776541 23478899999998874 33333 6788899999999987 445544 8889999
Q ss_pred cEeEeeccCccccccccccccCCCcceEecccccCCCCCcc
Q 001281 1035 EDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQ 1075 (1108)
Q Consensus 1035 ~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 1075 (1108)
+.|+|+ .+.++.+|. +..+++|+.|+|++| .+...|.
T Consensus 178 ~~L~Ls--~N~i~~l~~-l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 178 QNLYLS--KNHISDLRA-LAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CEEECC--SSCCCBCGG-GTTCTTCSEEECCSE-EEECCCC
T ss_pred CEEECc--CCCCCCChH-HccCCCCCEEEccCC-cCcCCcc
Confidence 999998 667888864 556899999999886 4555554
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=1.3e-11 Score=138.47 Aligned_cols=171 Identities=19% Similarity=0.235 Sum_probs=105.9
Q ss_pred cEEEecCccccccCcchhcCCCCcEEEeeCccccccchh-hh-cCccCcEeeecCCcCCcccc-hhccCCCCccEEeecC
Q 001281 598 RVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPES-TS-SLMHLRVLILRDCSRLTRLP-SKMWNLINLRHLDIEG 674 (1108)
Q Consensus 598 r~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~-i~-~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~ 674 (1108)
++++++++.++.+|..+. ..+++|+|++|.|+.+|.. +. ++++|++|+|++|. +..+| ..+.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 578888888888887664 4688888888888887655 44 78888888888865 44444 5688888888888888
Q ss_pred CCCCCcCCcc-CCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEec
Q 001281 675 ANSLEGMPYG-MEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWG 753 (1108)
Q Consensus 675 ~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 753 (1108)
|. +..+|.. +..+++|+.| +|++|
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L------------------------------------------------------~L~~N 122 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVL------------------------------------------------------LLYNN 122 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEE------------------------------------------------------ECCSS
T ss_pred Cc-CCcCCHHHhCCCcCCCEE------------------------------------------------------ECCCC
Confidence 87 5555432 3444444433 22222
Q ss_pred CCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCcccccc--CCcCcceEEEEeCCCCCCCCC-CCCCCCC--cc
Q 001281 754 SQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGD--LSFSKMEVLELQNCQNCTSLP-SLSMLGS--LK 828 (1108)
Q Consensus 754 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~--~~l~~L~~L~L~~~~~~~~l~-~l~~l~~--L~ 828 (1108)
...... ...+..+++|+.|++++|.+..+|..+.. ..+++|+.|+|++|.+....+ .+..++. |+
T Consensus 123 ~i~~~~----------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 123 HIVVVD----------RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp CCCEEC----------TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred cccEEC----------HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence 211100 01134455666666666666666655431 135778888888877653222 2455555 36
Q ss_pred EEEecCCC
Q 001281 829 QLTIKGMT 836 (1108)
Q Consensus 829 ~L~L~~~~ 836 (1108)
.|+|.+|+
T Consensus 193 ~l~l~~N~ 200 (361)
T 2xot_A 193 GLYLHNNP 200 (361)
T ss_dssp TEECCSSC
T ss_pred eEEecCCC
Confidence 77777765
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.21 E-value=1.7e-12 Score=146.15 Aligned_cols=232 Identities=13% Similarity=0.096 Sum_probs=145.6
Q ss_pred CCCceEEeeeeecCCCCCccchhhhhhhhccCCC-cccEEEecCcccccc-CcchhcC-----CCCcEEEeeCccccccc
Q 001281 562 VPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFK-KLRVLSLEGYYVTQL-PNSIKEL-----KLLRYLNVAGTQIRSLP 634 (1108)
Q Consensus 562 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~l-----~~L~~L~Ls~~~i~~lp 634 (1108)
.++|+.|.+.++... ......+...+.+++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.++..+
T Consensus 21 ~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNNLY----SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp CTTCCEEECTTSCGG----GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCCceEEEccCCCCC----hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 344888888766531 111122235677888 899999999999866 5666665 89999999999998654
Q ss_pred -hh----hhcC-ccCcEeeecCCcCCcccchh----ccC-CCCccEEeecCCCCCCc-----CCccCCCCC-CCCccCce
Q 001281 635 -ES----TSSL-MHLRVLILRDCSRLTRLPSK----MWN-LINLRHLDIEGANSLEG-----MPYGMEKLK-HLQTLSNF 697 (1108)
Q Consensus 635 -~~----i~~L-~~L~~L~l~~~~~~~~lp~~----i~~-L~~L~~L~l~~~~~~~~-----lp~~i~~L~-~L~~L~~~ 697 (1108)
.. +..+ ++|++|++++|......+.. +.. .++|++|++++|. +.. ++..+..+. +|++|+..
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeec
Confidence 33 4455 89999999998643333333 334 3699999999997 442 222233333 55554311
Q ss_pred eeCCCCCCCccccccccccCceeEecCccCCCChhh----hhhhccCCC-CCCCceEEEecCCCCCChhhhhhhhhhhcC
Q 001281 698 IVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLRE----AGEAMLCEK-QNLQALSLQWGSQFDSSREEVAKEHTVLDM 772 (1108)
Q Consensus 698 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~----~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 772 (1108)
.+.+.. .....+... ++|+.|++++|......... ....
T Consensus 176 ------------------------------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~------l~~~ 219 (362)
T 3goz_A 176 ------------------------------GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE------LAYI 219 (362)
T ss_dssp ------------------------------TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH------HHHH
T ss_pred ------------------------------CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH------HHHH
Confidence 111211 122234445 48999999888643221111 1122
Q ss_pred CCC-CCCCCeEEEeecCCCCCcc-----ccccCCcCcceEEEEeCCCCCCCC--------CCCCCCCCccEEEecCCC
Q 001281 773 LQP-HTNLKKLAITSYSGENFPM-----WIGDLSFSKMEVLELQNCQNCTSL--------PSLSMLGSLKQLTIKGMT 836 (1108)
Q Consensus 773 l~~-~~~L~~L~l~~~~~~~~p~-----~~~~~~l~~L~~L~L~~~~~~~~l--------~~l~~l~~L~~L~L~~~~ 836 (1108)
+.. .++|++|++++|.....+. .+. .+++|+.|+|++|.+.... ..+..+++|+.|++++|.
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~--~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKD--SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTT--TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHh--cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 222 3589999999998766543 122 4578999999999732221 246788889999998886
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.20 E-value=2.1e-11 Score=125.20 Aligned_cols=98 Identities=32% Similarity=0.495 Sum_probs=68.4
Q ss_pred CcccEEEecCccccccCc-chhcCCCCcEEEeeCccccccchh-hhcCccCcEeeecCCcCCcccch-hccCCCCccEEe
Q 001281 595 KKLRVLSLEGYYVTQLPN-SIKELKLLRYLNVAGTQIRSLPES-TSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLD 671 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 671 (1108)
++|++|++++|.++.+|. .+..+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|. .+.++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence 467888888888877754 467788888888888888877654 5778888888888864 445554 357788888888
Q ss_pred ecCCCCCCcCCcc-CCCCCCCCcc
Q 001281 672 IEGANSLEGMPYG-MEKLKHLQTL 694 (1108)
Q Consensus 672 l~~~~~~~~lp~~-i~~L~~L~~L 694 (1108)
+++|. +..+|.. +..+++|+.|
T Consensus 107 L~~N~-l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 107 LNTNQ-LQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cCCCc-CcccCHhHhccCCcCCEE
Confidence 88776 5555543 4445555444
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=4.7e-11 Score=123.35 Aligned_cols=124 Identities=23% Similarity=0.341 Sum_probs=96.1
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchh-hhcC
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPES-TSSL 640 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L 640 (1108)
++++.|.+.++.. ..+++..|..+++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. +..+
T Consensus 32 ~~l~~L~l~~n~i--------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNTI--------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSCC--------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCcC--------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 4677777766543 234455678888999999999998877 77888999999999999999988776 5789
Q ss_pred ccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCcc-CCCCCCCCccC
Q 001281 641 MHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYG-MEKLKHLQTLS 695 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~ 695 (1108)
++|++|+|++|......|..+..+++|++|+|++|. +..+|.. +..+++|+.|+
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEE
Confidence 999999999876544456778889999999999887 6666654 67777777664
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=4.4e-11 Score=127.34 Aligned_cols=153 Identities=19% Similarity=0.200 Sum_probs=104.7
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
+..+++|++|++++|.++.+| .+..+++|++|++++|.|+.+|. +.++++|++|++++|. +..+|... . ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIP-S-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCC-C-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccc-c-CcccEE
Confidence 456678888888888888887 67888888888888888888877 8888888888888864 56666533 3 888888
Q ss_pred eecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEE
Q 001281 671 DIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSL 750 (1108)
Q Consensus 671 ~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 750 (1108)
++++|. +..+| .++.+++|+.|+.... .+... ..+..+++|+.|++
T Consensus 112 ~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N------------------------------~i~~~--~~l~~l~~L~~L~L 157 (263)
T 1xeu_A 112 FLDNNE-LRDTD-SLIHLKNLEILSIRNN------------------------------KLKSI--VMLGFLSKLEVLDL 157 (263)
T ss_dssp ECCSSC-CSBSG-GGTTCTTCCEEECTTS------------------------------CCCBC--GGGGGCTTCCEEEC
T ss_pred EccCCc-cCCCh-hhcCcccccEEECCCC------------------------------cCCCC--hHHccCCCCCEEEC
Confidence 888887 66554 4666666666641110 01010 12445667777887
Q ss_pred EecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCcc
Q 001281 751 QWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPM 794 (1108)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~ 794 (1108)
++|..... ..+..+++|+.|++++|.....|.
T Consensus 158 ~~N~i~~~------------~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 158 HGNEITNT------------GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTSCCCBC------------TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCCcCcch------------HHhccCCCCCEEeCCCCcccCCcc
Confidence 77654321 345667788888888887665553
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=3.9e-11 Score=118.33 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=66.6
Q ss_pred CCcccEEEecCcccc--ccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEEe
Q 001281 594 FKKLRVLSLEGYYVT--QLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLD 671 (1108)
Q Consensus 594 l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 671 (1108)
.+.|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+.++++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 366777777777777 6777777777777777777777766 6677777777777777654444666666677777777
Q ss_pred ecCCCCCCcCC--ccCCCCCCCCcc
Q 001281 672 IEGANSLEGMP--YGMEKLKHLQTL 694 (1108)
Q Consensus 672 l~~~~~~~~lp--~~i~~L~~L~~L 694 (1108)
+++|. +..+| ..++.+++|+.|
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEE
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEE
Confidence 77776 55544 334444444333
No 126
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=4.2e-10 Score=119.16 Aligned_cols=197 Identities=11% Similarity=0.089 Sum_probs=121.3
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
..++||+..++.+..++..... .+.+.|+|++|+||||+|+.+++...... .+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~----~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI----HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC----CSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC----CeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCC------CCCcccHH-HHHHh
Confidence 4699999999999999865432 35889999999999999999987543211 1000 00000000 00000
Q ss_pred HHh-----cCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhh
Q 001281 264 ESI-----TCKPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVA 333 (1108)
Q Consensus 264 ~~l-----~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 333 (1108)
... ..........+... .+.+.+ .+++.+||+||++.-+...++.+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 00000111112222 222222 3568999999997666667777777776666778899988764321
Q ss_pred -hh-ccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhh
Q 001281 334 -ST-MGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLL 398 (1108)
Q Consensus 334 -~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 398 (1108)
.. ......+.+++++.++..+++...+...... ..++....|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-----~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-----HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 1223579999999999999998876432211 112567899999999999988776543
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=5e-13 Score=158.19 Aligned_cols=196 Identities=17% Similarity=0.134 Sum_probs=112.6
Q ss_pred cCCCcccEEEecCccccccCcchhcCCCCcEEEeeCcc--------------ccccchhhhcCccCcEee-ecCCcCCcc
Q 001281 592 PKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQ--------------IRSLPESTSSLMHLRVLI-LRDCSRLTR 656 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~--------------i~~lp~~i~~L~~L~~L~-l~~~~~~~~ 656 (1108)
...+.|+.|+|++|.++.+|..++++++|+.|++++|. ...+|..+++|++|+.|+ ++.| .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 45677888888888888888888888888888876653 223456667777777777 4432 2222
Q ss_pred cch------hccC--CCCccEEeecCCCCCCcCCccCCCCCCCCccCceeeCCCCCCCccccccccccCceeEecCccCC
Q 001281 657 LPS------KMWN--LINLRHLDIEGANSLEGMPYGMEKLKHLQTLSNFIVGKDTGSGLKDLKNLKFLHGELCISGLQNV 728 (1108)
Q Consensus 657 lp~------~i~~--L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~ 728 (1108)
++. .+.. ...|++|++++|. +..+|. ++.+++|+.|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L---------------------------------- 468 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHL---------------------------------- 468 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEE----------------------------------
T ss_pred hhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEe----------------------------------
Confidence 221 1111 1246667776665 555553 4444444444
Q ss_pred CChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCCCCeEEEeecCCCCCccccccCCcCcceEEE
Q 001281 729 NDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLE 808 (1108)
Q Consensus 729 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~ 808 (1108)
++++|.... .+ ..+..+++|+.|++++|.+..+| .+. .+++|+.|+
T Consensus 469 --------------------~Ls~N~l~~-lp----------~~~~~l~~L~~L~Ls~N~l~~lp-~l~--~l~~L~~L~ 514 (567)
T 1dce_A 469 --------------------DLSHNRLRA-LP----------PALAALRCLEVLQASDNALENVD-GVA--NLPRLQELL 514 (567)
T ss_dssp --------------------ECCSSCCCC-CC----------GGGGGCTTCCEEECCSSCCCCCG-GGT--TCSSCCEEE
T ss_pred --------------------ecCcccccc-cc----------hhhhcCCCCCEEECCCCCCCCCc-ccC--CCCCCcEEE
Confidence 443333221 11 11334556666666666666666 444 357788888
Q ss_pred EeCCCCCCCC-C-CCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccceEe
Q 001281 809 LQNCQNCTSL-P-SLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLETLR 861 (1108)
Q Consensus 809 L~~~~~~~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~ 861 (1108)
|++|.+.+.. | .++.+++|+.|+|++|......+ ... .....+|+|+.|+
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~--~l~~~lp~L~~L~ 566 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQE--RLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTT--HHHHHCTTCSEEE
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHH--HHHHHCcccCccC
Confidence 8887776653 3 57778888888887776332222 110 1123467777764
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=6.6e-11 Score=116.70 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=87.4
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccc-cchhhhcCc
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRS-LPESTSSLM 641 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~-lp~~i~~L~ 641 (1108)
++++.|.+.++.. ....++..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+.+++
T Consensus 24 ~~L~~L~l~~n~l-------~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKS-------NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBC-------BTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCC-------ChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 5566666655442 1012334456777888888888887777 667778888888888888876 666677788
Q ss_pred cCcEeeecCCcCCcccc--hhccCCCCccEEeecCCCCCCcCCc----cCCCCCCCCccCce
Q 001281 642 HLRVLILRDCSRLTRLP--SKMWNLINLRHLDIEGANSLEGMPY----GMEKLKHLQTLSNF 697 (1108)
Q Consensus 642 ~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~~ 697 (1108)
+|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|+..
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCC
Confidence 88888888864 56655 567788888888888876 666665 56777777777533
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=9e-11 Score=121.23 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=39.2
Q ss_pred EEEecCccccccCcchhcCCCCcEEEeeCccccccch--hhhcCccCcEeeecCCcCCcccc-hhccCCCCccEEeecCC
Q 001281 599 VLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE--STSSLMHLRVLILRDCSRLTRLP-SKMWNLINLRHLDIEGA 675 (1108)
Q Consensus 599 ~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~ 675 (1108)
++++++|.++.+|..+. ..+++|+|++|.|+.++. .+.++++|++|++++|. +..++ ..+.++++|++|++++|
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC
Confidence 55555555555555442 234555555555555522 24555555666655543 33332 34555555555555555
Q ss_pred C
Q 001281 676 N 676 (1108)
Q Consensus 676 ~ 676 (1108)
.
T Consensus 92 ~ 92 (220)
T 2v70_A 92 R 92 (220)
T ss_dssp C
T ss_pred c
Confidence 4
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.15 E-value=3.2e-10 Score=117.92 Aligned_cols=84 Identities=17% Similarity=0.279 Sum_probs=46.1
Q ss_pred CCCCccEEEEeccCCccccccccCCc-ccCCCCCCCcEeEeeccCccccccccccccCCCcceEecccccCCCCCcccCC
Q 001281 1000 GFQQVETLRIGNSEQIKSWLQFDKPE-QGLHVLSSPEDVSIEENCMSLVSFSEVIFLMNNLRYLKIENSRALKSLPQEVM 1078 (1108)
Q Consensus 1000 ~l~~L~~L~l~~~~~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~l 1078 (1108)
.+++|++|++++|. +..+| ..|..+++|++|+++ .|.++.+|..+..+++|+.|+++++ .++.+|...+
T Consensus 86 ~l~~L~~L~Ls~N~-------l~~l~~~~~~~l~~L~~L~Ls--~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 155 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQ-------LTVLPSAVFDRLVHLKELFMC--CNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAF 155 (229)
T ss_dssp TCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECC--SSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTT
T ss_pred cCCCcCEEECCCCc-------CCccChhHhCcchhhCeEecc--CCcccccCcccccCCCCCEEECCCC-cCCccCHHHH
Confidence 34455555555554 33333 334556666666665 4555566555555666666666553 5555555455
Q ss_pred CCCCCccEEeeecCc
Q 001281 1079 GNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1079 ~~l~~L~~L~l~~c~ 1093 (1108)
..+++|+.|+++++|
T Consensus 156 ~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred hCCCCCCEEEeeCCC
Confidence 556666666666554
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=1.5e-10 Score=119.62 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=96.2
Q ss_pred CceEEeeeeecCCCCCccchhhh-hhhhccCCCcccEEEecCccccccC-cchhcCCCCcEEEeeCccccccchh-hhcC
Q 001281 564 HLRTFLPVFIRGGTDTSYITNVL-LSDMLPKFKKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSLPES-TSSL 640 (1108)
Q Consensus 564 ~Lr~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L 640 (1108)
.++.|.+.++.. ..+ ....|.++++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+|.. +.++
T Consensus 33 ~~~~L~L~~N~l--------~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 33 YTAELRLNNNEF--------TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp TCSEEECCSSCC--------CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCEEEcCCCcC--------CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 456666655543 112 2345778899999999999998885 4789999999999999999988654 8899
Q ss_pred ccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcC-CccCCCCCCCCccC
Q 001281 641 MHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGM-PYGMEKLKHLQTLS 695 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~ 695 (1108)
++|++|++++|......|..+..+++|++|++++|. +..+ |..+..+++|+.|+
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEE
Confidence 999999999976555557788899999999999988 5555 66788888888875
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=3.6e-11 Score=115.86 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=87.5
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccc-cchhhhcCc
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRS-LPESTSSLM 641 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~-lp~~i~~L~ 641 (1108)
++++.|.+.++.. ....++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+++++
T Consensus 17 ~~l~~L~l~~n~l-------~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRS-------NEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBC-------BTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcC-------ChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 4556665554432 1112334567778888888888888877 667888888888888888886 677777788
Q ss_pred cCcEeeecCCcCCcccc--hhccCCCCccEEeecCCCCCCcCCc----cCCCCCCCCccC
Q 001281 642 HLRVLILRDCSRLTRLP--SKMWNLINLRHLDIEGANSLEGMPY----GMEKLKHLQTLS 695 (1108)
Q Consensus 642 ~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~ 695 (1108)
+|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 88888888865 55544 678888888888888886 666665 466677777664
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.10 E-value=9.7e-11 Score=116.40 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=95.7
Q ss_pred cccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhh
Q 001281 558 SLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPEST 637 (1108)
Q Consensus 558 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i 637 (1108)
.+..+++|+.|.+.++... .+ +......++|++|++++|.++.+ ..++.+++|++|++++|.|+.+|..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~--------~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP--------VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCC--------SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred hcCCcCCceEEEeeCCCCc--------hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 4556777888877665441 11 22222334899999999998887 57888899999999999999888665
Q ss_pred -hcCccCcEeeecCCcCCcccch--hccCCCCccEEeecCCCCCCcCCcc----CCCCCCCCccCc
Q 001281 638 -SSLMHLRVLILRDCSRLTRLPS--KMWNLINLRHLDIEGANSLEGMPYG----MEKLKHLQTLSN 696 (1108)
Q Consensus 638 -~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~~ 696 (1108)
+.+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|+.
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCC
Confidence 889999999999864 677776 78889999999999887 6677764 677777777753
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.09 E-value=2.4e-10 Score=128.21 Aligned_cols=169 Identities=14% Similarity=0.132 Sum_probs=98.0
Q ss_pred cEEeecCCCCCCCCCCCCC-CCccEEEEccCCCccccCCCCCcccEEEEeecCCccccCCC-CCCCccEEEEecCCcccc
Q 001281 886 RELSILKCPKFSGKLPELL-PSLEILVISKCADLVVPFSSFPMLCRLEIEECKGITCSTPI-DCKLIESMTISNSSLQIY 963 (1108)
Q Consensus 886 ~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~l~~L~~L~l~~n~~~~~ 963 (1108)
+.+++++ +.++ .+|..+ +.++.|++++|....... ..+. .+++|+.|++++|.+..+
T Consensus 21 ~~l~c~~-~~l~-~iP~~~~~~l~~L~Ls~N~l~~l~~-------------------~~~~~~l~~L~~L~L~~N~i~~i 79 (361)
T 2xot_A 21 NILSCSK-QQLP-NVPQSLPSYTALLDLSHNNLSRLRA-------------------EWTPTRLTNLHSLLLSHNHLNFI 79 (361)
T ss_dssp TEEECCS-SCCS-SCCSSCCTTCSEEECCSSCCCEECT-------------------TSSSSCCTTCCEEECCSSCCCEE
T ss_pred CEEEeCC-CCcC-ccCccCCCCCCEEECCCCCCCccCh-------------------hhhhhcccccCEEECCCCcCCcc
Confidence 4666666 3664 567544 356777777765432111 1111 344444444444444322
Q ss_pred cccCcccCCCCCCCCCCCCcEEEEcccCCCcccc---cCCCCCccEEEEeccCCccccccccCCcccCCCCCCCcEeEee
Q 001281 964 GCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFL---KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIE 1040 (1108)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~ 1040 (1108)
.+..|..+++|+.|+++++. ++.++ +..+++|++|+|++|.. ....|..|.++++|++|+|+
T Consensus 80 --------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i------~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 80 --------SSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHI------VVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp --------CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC------CEECTTTTTTCTTCCEEECC
T ss_pred --------ChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcc------cEECHHHhCCcccCCEEECC
Confidence 12233355555555555532 33332 35567777777777773 22235667778888888886
Q ss_pred ccCcccccccccc----ccCCCcceEecccccCCCCCcccCCCCCCC--ccEEeeecCc
Q 001281 1041 ENCMSLVSFSEVI----FLMNNLRYLKIENSRALKSLPQEVMGNNAQ--LEKLFIKYCD 1093 (1108)
Q Consensus 1041 ~~c~~l~~lp~~~----~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~--L~~L~l~~c~ 1093 (1108)
.|.++.+|... ..+++|+.|+|++ +.++.+|...+..++. |+.|+++++|
T Consensus 145 --~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 145 --QNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp --SSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred --CCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 66777777654 3577888888876 4677777655666665 4778887765
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=2.6e-09 Score=111.08 Aligned_cols=187 Identities=12% Similarity=0.015 Sum_probs=118.8
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
...++||++.++++.+++.... .+.+.|+|++|+|||++|+.+++...... .-...+.+..+.......+...+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN-----IPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC-----CCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC-----CCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccChHHHHHHH
Confidence 3468999999999999986543 23489999999999999999987542211 11123334433333322221111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhh-hh-ccccc
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVA-ST-MGSVE 340 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~-~~~~~ 340 (1108)
....... ..-.+++.+||+||++.-....++.+...+.....+.++|+||+..... .. .....
T Consensus 90 ~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 1111000 0113578999999997766566667777766666778899988764321 11 11224
Q ss_pred eeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 341 HYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 341 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
.+.+.+++.++..+++...+...... +..+....+++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK-----ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC-----BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78999999999999998876422211 112567789999999998655443
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=8.1e-11 Score=113.40 Aligned_cols=101 Identities=22% Similarity=0.306 Sum_probs=88.4
Q ss_pred CCCcccEEEecCcccc--ccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccEE
Q 001281 593 KFKKLRVLSLEGYYVT--QLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHL 670 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 670 (1108)
..++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++++++|++|++++|.....+|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4478999999999998 8899899999999999999999988 789999999999999987555588888889999999
Q ss_pred eecCCCCCCcCC--ccCCCCCCCCccC
Q 001281 671 DIEGANSLEGMP--YGMEKLKHLQTLS 695 (1108)
Q Consensus 671 ~l~~~~~~~~lp--~~i~~L~~L~~L~ 695 (1108)
++++|. +..+| ..++.+++|++|+
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEE
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEe
Confidence 999998 66654 6678888888774
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=2.6e-10 Score=139.48 Aligned_cols=108 Identities=23% Similarity=0.321 Sum_probs=89.7
Q ss_pred hhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCC
Q 001281 586 LLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLI 665 (1108)
Q Consensus 586 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 665 (1108)
++++.+..++.|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..+++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 4566788889999999999999989888889999999999999999999889999999999999975 568898899999
Q ss_pred CccEEeecCCCCCCcCCccCCCCCCCCccC
Q 001281 666 NLRHLDIEGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 666 ~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
+|++|+|++|. +..+|..+++|++|+.|+
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence 99999999887 778888888888888885
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=7.6e-10 Score=111.41 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=38.0
Q ss_pred cccEEEecCccccccCcchhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecC
Q 001281 596 KLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEG 674 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 674 (1108)
.|++|+|++|.++.+|..+.++++|++|+|++|.|+.++. .|.++++|++|+|++|......|..+..+++|++|+|++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 4455555555555444445555555555555555544432 344555555555554432222223344455555555554
Q ss_pred CC
Q 001281 675 AN 676 (1108)
Q Consensus 675 ~~ 676 (1108)
|.
T Consensus 112 N~ 113 (193)
T 2wfh_A 112 ND 113 (193)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=5.2e-10 Score=112.75 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=50.2
Q ss_pred cEEEecCccccccCcchhcCCCCcEEEeeCccccccchh--hhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCC
Q 001281 598 RVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPES--TSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGA 675 (1108)
Q Consensus 598 r~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~--i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 675 (1108)
++++++++.++.+|..+.. +|++|++++|.|+.+|.. ++++++|++|++++|......|..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4556666666666554432 566666666666655542 556666666666665433333555566666666666665
Q ss_pred CCCCcCCcc-CCCCCCCCcc
Q 001281 676 NSLEGMPYG-MEKLKHLQTL 694 (1108)
Q Consensus 676 ~~~~~lp~~-i~~L~~L~~L 694 (1108)
. +..+|.. ++.+++|++|
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEE
T ss_pred c-CCccCHHHhcCCCCCCEE
Confidence 5 3333322 4444444433
No 140
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.00 E-value=1.7e-09 Score=119.56 Aligned_cols=269 Identities=14% Similarity=0.088 Sum_probs=146.6
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-..|+|++..+..+..++............+.|+|++|+|||++|+.+++.... . .+++..+......
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~---~---~~~~~~~~~~~~~------ 78 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV---N---LRVTSGPAIEKPG------ 78 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC---C---EEEECTTTCCSHH------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC---C---EEEEeccccCChH------
Confidence 357999999999888877521100112356889999999999999999875321 1 2334333222211
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC------------------CCcEEE
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA------------------PNSKII 324 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 324 (1108)
++...+...+ .++.+|++|++..-.....+.+...+.... ++..+|
T Consensus 79 ---------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 79 ---------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ---------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ---------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1111111111 356799999997665555555554443221 245677
Q ss_pred EecCchh-hhhhc-cc-cceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhhhcCC
Q 001281 325 VTTRHSH-VASTM-GS-VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGLLRTK 401 (1108)
Q Consensus 325 vTtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~ 401 (1108)
.||.... +...+ .- ...+.+.+++.+|..+++...+...... +.++....+++.++|.|-.+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-----~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-----ITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-----CCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6666432 21111 11 2478999999999999988776433211 122677899999999998887665544211
Q ss_pred --------CChhHHHHHHhhccCCCCCCCChhHHHHHhhhcCChhHHHHHhHhc-ccCCC----------ceechHHH--
Q 001281 402 --------HGDNAWEDILNSNIWDLPEQSGVQPVLKLSYHYLPSHLKRCFAYCA-IFPKD----------YELKEKEL-- 460 (1108)
Q Consensus 402 --------~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~-~fp~~----------~~i~~~~l-- 460 (1108)
-+.+....++.... ..+..++...+..+..+. .|..+ ..+++..+
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~~--------------~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAALG--------------LDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHHT--------------CCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHhc--------------ccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 11233333332211 112334444444444332 22111 11222222
Q ss_pred --HHHHHHcCCccCCCCchhHHHHHHHHHH-HHHhCccccc
Q 001281 461 --VFLWMAEGIIQQPRNNKQLEDWGSECFH-DLVSRSIFQQ 498 (1108)
Q Consensus 461 --i~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~li~~ 498 (1108)
-.+-+..|++.....+....+.|..|+. ++++|+|||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 2235567888665566666778888887 7888888874
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=1.1e-09 Score=110.39 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=63.9
Q ss_pred CCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccC-cchhcCCCCcEEEeeCccccccch-hhhcC
Q 001281 563 PHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSLPE-STSSL 640 (1108)
Q Consensus 563 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L 640 (1108)
++++.|.+.++... .++..|.++++|++|+|++|.++.++ ..|.++++|++|+|++|.|+.+|. .+.++
T Consensus 31 ~~l~~L~L~~n~i~---------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 31 RDVTELYLDGNQFT---------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp TTCCEEECCSSCCC---------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCCEEECCCCcCc---------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 45666665554431 12245666667777777777776663 456667777777777777766643 46667
Q ss_pred ccCcEeeecCCcCCcccch-hccCCCCccEEeecCCC
Q 001281 641 MHLRVLILRDCSRLTRLPS-KMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 641 ~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~ 676 (1108)
++|++|+|++|. +..+|. .+..+++|++|++++|.
T Consensus 102 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 102 KSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 777777777654 444544 35666777777776665
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=7e-10 Score=131.24 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=61.0
Q ss_pred ccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCccc--chhccCCCCcc
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRL--PSKMWNLINLR 668 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l--p~~i~~L~~L~ 668 (1108)
+..+++|++|+|++|.++.+|..++++++|++|+|++|.|+.+| .++++++|++|+|++|. +..+ |..++.+++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCC
Confidence 55666677777777777777777777777777777777777666 66777777777777654 3444 66677777777
Q ss_pred EEeecCCCCCCcCCcc
Q 001281 669 HLDIEGANSLEGMPYG 684 (1108)
Q Consensus 669 ~L~l~~~~~~~~lp~~ 684 (1108)
+|++++|. +..+|..
T Consensus 537 ~L~L~~N~-l~~~~~~ 551 (567)
T 1dce_A 537 LLNLQGNS-LCQEEGI 551 (567)
T ss_dssp EEECTTSG-GGGSSSC
T ss_pred EEEecCCc-CCCCccH
Confidence 77777766 5555543
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.97 E-value=9.2e-11 Score=143.53 Aligned_cols=120 Identities=27% Similarity=0.334 Sum_probs=96.8
Q ss_pred ccccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchh
Q 001281 557 ESLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPES 636 (1108)
Q Consensus 557 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~ 636 (1108)
..+..++.|+.|.+.++.. ..++.. +.++++|++|+|++|.++.+|..|+++++|++|+|++|.|+.+|..
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l--------~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQI--------FNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp ----CCCCCCEEECTTSCC--------SCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred hhhccCCCCcEEECCCCCC--------CCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh
Confidence 3456778888888876654 122223 3478999999999999999999999999999999999999999999
Q ss_pred hhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCCCCCCcCCccCC
Q 001281 637 TSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGANSLEGMPYGME 686 (1108)
Q Consensus 637 i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~ 686 (1108)
|++|++|++|+|++| .++.+|..|++|++|++|+|++|.....+|..+.
T Consensus 289 ~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 999999999999997 4679999999999999999999984444454443
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=1.3e-09 Score=109.77 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=69.4
Q ss_pred cccEEEecCccccccCcc--hhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchhccCCCCccEEee
Q 001281 596 KLRVLSLEGYYVTQLPNS--IKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDI 672 (1108)
Q Consensus 596 ~Lr~L~L~~~~i~~lp~~--i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 672 (1108)
.|++|++++|.++.++.. ++.+++|++|+|++|.|+.+ |..+.++++|++|++++|......|..+.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 677778888877777543 77777888888888877766 566777888888888776543333445777778888888
Q ss_pred cCCCCCCcCCccCCCCCCCCccC
Q 001281 673 EGANSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 673 ~~~~~~~~lp~~i~~L~~L~~L~ 695 (1108)
++|......|..++.+++|+.|+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCcCCeeCHHHhhcCCCCCEEE
Confidence 77773333455666676666663
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=7.5e-10 Score=109.89 Aligned_cols=101 Identities=21% Similarity=0.318 Sum_probs=85.5
Q ss_pred ccCCCcccEEEecCccccccCcchhcCC-CCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhc-cCCCCcc
Q 001281 591 LPKFKKLRVLSLEGYYVTQLPNSIKELK-LLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKM-WNLINLR 668 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i-~~L~~L~ 668 (1108)
+.++.+|++|++++|.++.+|. +..+. +|++|++++|.|+.+ ..++++++|++|++++|. +..+|..+ +.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 5678899999999999999875 55555 999999999999988 689999999999999975 66777555 8999999
Q ss_pred EEeecCCCCCCcCCc--cCCCCCCCCccC
Q 001281 669 HLDIEGANSLEGMPY--GMEKLKHLQTLS 695 (1108)
Q Consensus 669 ~L~l~~~~~~~~lp~--~i~~L~~L~~L~ 695 (1108)
+|++++|. +..+|. .++.+++|+.|+
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEE
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEE
Confidence 99999998 777776 577777777664
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1.1e-08 Score=113.12 Aligned_cols=188 Identities=15% Similarity=0.150 Sum_probs=117.7
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
...++|++..++.+..++.... .+.+.++|++|+||||+|+.+++...... .....+++..+....... .+++
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN-----MPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC-----CCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC-----CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChHH-HHHH
Confidence 3569999999999999986543 23389999999999999999987642211 111233444333222211 1112
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-hhhhc-ccc
Q 001281 263 LESITCKPCDLKALNEVQVQLQKAL-DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-VASTM-GSV 339 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~ 339 (1108)
++.+... ...+ .+++.+||+||++.-....++.+...+.....++.+|+||+... +...+ ...
T Consensus 93 ~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 2111100 0012 45689999999976655666666666666667788888887633 11111 222
Q ss_pred ceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH-HHHHHHh
Q 001281 340 EHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL-AAKTLGG 396 (1108)
Q Consensus 340 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 396 (1108)
..+.+.+++.++..+++...+....-. +.++....|++.++|.|. |+..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK-----YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC-----BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 479999999999999998776422111 112567899999999995 4444443
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=8e-11 Score=119.59 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=74.3
Q ss_pred hccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhccCCCCccE
Q 001281 590 MLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRH 669 (1108)
Q Consensus 590 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 669 (1108)
.+.++++|++|+|++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .++++++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence 5667788888888888888877 7788888888888888888888777777888888888864 55566 4777888888
Q ss_pred EeecCCCCCCcCCc--cCCCCCCCCcc
Q 001281 670 LDIEGANSLEGMPY--GMEKLKHLQTL 694 (1108)
Q Consensus 670 L~l~~~~~~~~lp~--~i~~L~~L~~L 694 (1108)
|++++|. +..+|. .+..+++|+.|
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 8888776 554443 34455555544
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=8.6e-09 Score=113.94 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=60.3
Q ss_pred CCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccch-hhhc--------CccCcEeeecCCcCCcccch-hccC
Q 001281 594 FKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPE-STSS--------LMHLRVLILRDCSRLTRLPS-KMWN 663 (1108)
Q Consensus 594 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~--------L~~L~~L~l~~~~~~~~lp~-~i~~ 663 (1108)
+++|++|||++|.+......-+.++.++++.+..+ .+|. .|.+ +.+|+.|++.+ .++.++. .|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 78899999999988722111122333566666655 3443 4566 89999999987 3555654 5788
Q ss_pred CCCccEEeecCCCCCCcCCcc-CCCCCCCCcc
Q 001281 664 LINLRHLDIEGANSLEGMPYG-MEKLKHLQTL 694 (1108)
Q Consensus 664 L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L 694 (1108)
+++|+.|++++|. +..++.. +....++..+
T Consensus 123 ~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 123 CDNLKICQIRKKT-APNLLPEALADSVTAIFI 153 (329)
T ss_dssp CTTCCEEEBCCSS-CCEECTTSSCTTTCEEEE
T ss_pred CcccceEEcCCCC-ccccchhhhcCCCceEEe
Confidence 9999999998886 4455443 4444444444
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=1.5e-10 Score=117.52 Aligned_cols=127 Identities=23% Similarity=0.257 Sum_probs=103.2
Q ss_pred cccCCCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCcchhcCCCCcEEEeeCccccccchhh
Q 001281 558 SLYEVPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSLPEST 637 (1108)
Q Consensus 558 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~lp~~i 637 (1108)
.+..+++|+.|.+.++... . ++ .+.++++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~--------~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE--------K-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEES--------C-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HHhcCCCCCEEECCCCCCc--------c-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 5677899999998877541 1 22 577889999999999999999998888999999999999999988 69
Q ss_pred hcCccCcEeeecCCcCCcccch--hccCCCCccEEeecCCCCCCcCCcc----------CCCCCCCCccCc
Q 001281 638 SSLMHLRVLILRDCSRLTRLPS--KMWNLINLRHLDIEGANSLEGMPYG----------MEKLKHLQTLSN 696 (1108)
Q Consensus 638 ~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~----------i~~L~~L~~L~~ 696 (1108)
+++++|++|++++|. +..+|. .+..+++|++|++++|......|.. +..+++|+.|+.
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 999999999999975 666654 7899999999999999733333322 567777777753
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=8.3e-09 Score=101.41 Aligned_cols=93 Identities=27% Similarity=0.417 Sum_probs=50.1
Q ss_pred cEEEecCccccccCcchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchh-ccCCCCccEEeecCC
Q 001281 598 RVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSK-MWNLINLRHLDIEGA 675 (1108)
Q Consensus 598 r~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 675 (1108)
++|++++|.++.+|..+. ++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCC
Confidence 455666666655555442 5556666666666555 3345556666666666543 3344432 355566666666655
Q ss_pred CCCCcCCcc-CCCCCCCCcc
Q 001281 676 NSLEGMPYG-MEKLKHLQTL 694 (1108)
Q Consensus 676 ~~~~~lp~~-i~~L~~L~~L 694 (1108)
. +..+|.. +..+++|+.|
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEE
T ss_pred c-cCEeCHHHhcCCCCCCEE
Confidence 5 4444443 4555555554
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=9.2e-09 Score=101.42 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=44.9
Q ss_pred CcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchh-hhcCccCcEeeecCCcCCcccchh-ccCCCCccEEe
Q 001281 595 KKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPES-TSSLMHLRVLILRDCSRLTRLPSK-MWNLINLRHLD 671 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~ 671 (1108)
+.|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|.. +.++++|++|+|++|. +..+|.. +.++++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 4555566666665555 44555556666666666665555544 3555666666665543 3444443 55555666666
Q ss_pred ecCCC
Q 001281 672 IEGAN 676 (1108)
Q Consensus 672 l~~~~ 676 (1108)
+++|.
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 65554
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=9.9e-09 Score=101.90 Aligned_cols=98 Identities=30% Similarity=0.502 Sum_probs=52.7
Q ss_pred CcccEEEecCccccccCc-chhcCCCCcEEEeeCccccccchh-hhcCccCcEeeecCCcCCcccch-hccCCCCccEEe
Q 001281 595 KKLRVLSLEGYYVTQLPN-SIKELKLLRYLNVAGTQIRSLPES-TSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLD 671 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 671 (1108)
+.|++|++++|.++.+|. .++.+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|. .+.++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 355566666666555533 345556666666666666555443 4556666666666543 333333 345556666666
Q ss_pred ecCCCCCCcCCcc-CCCCCCCCcc
Q 001281 672 IEGANSLEGMPYG-MEKLKHLQTL 694 (1108)
Q Consensus 672 l~~~~~~~~lp~~-i~~L~~L~~L 694 (1108)
+++|. +..+|.. +..+++|+.|
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CcCCc-ceEeCHHHhcCCcccCEE
Confidence 66554 4455544 3445555554
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=1.4e-08 Score=100.82 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=85.9
Q ss_pred CCCceEEeeeeecCCCCCccchhhhhhhhccCCCcccEEEecCccccccCc-chhcCCCCcEEEeeCccccccchh-hhc
Q 001281 562 VPHLRTFLPVFIRGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQLPN-SIKELKLLRYLNVAGTQIRSLPES-TSS 639 (1108)
Q Consensus 562 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i~~lp~~-i~~ 639 (1108)
.++++.|.+.++.. ..+++..|..+++|++|++++|.++.+|. .+..+++|++|++++|.++.+|.. +.+
T Consensus 27 ~~~l~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 27 PSSATRLELESNKL--------QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp CTTCSEEECCSSCC--------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcEEEeCCCcc--------cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhC
Confidence 36788888776553 23445567888999999999999998864 468999999999999999988765 688
Q ss_pred CccCcEeeecCCcCCcccchh-ccCCCCccEEeecCCC
Q 001281 640 LMHLRVLILRDCSRLTRLPSK-MWNLINLRHLDIEGAN 676 (1108)
Q Consensus 640 L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 676 (1108)
+++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 99 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 99 LTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 9999999999975 5667665 5789999999999987
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=8.7e-09 Score=101.60 Aligned_cols=95 Identities=24% Similarity=0.404 Sum_probs=83.4
Q ss_pred cEEEecCccccccCcchhcCCCCcEEEeeCcccccc-chhhhcCccCcEeeecCCcCCcccchh-ccCCCCccEEeecCC
Q 001281 598 RVLSLEGYYVTQLPNSIKELKLLRYLNVAGTQIRSL-PESTSSLMHLRVLILRDCSRLTRLPSK-MWNLINLRHLDIEGA 675 (1108)
Q Consensus 598 r~L~L~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 675 (1108)
+.++++++.++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 689999999999998775 8999999999999988 5678999999999999974 6777765 589999999999999
Q ss_pred CCCCcCCcc-CCCCCCCCccCc
Q 001281 676 NSLEGMPYG-MEKLKHLQTLSN 696 (1108)
Q Consensus 676 ~~~~~lp~~-i~~L~~L~~L~~ 696 (1108)
. +..+|.. +..+++|+.|+.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEEC
T ss_pred c-cceeCHHHhccccCCCEEEe
Confidence 8 7788876 888999998853
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=1.6e-08 Score=111.83 Aligned_cols=91 Identities=9% Similarity=0.064 Sum_probs=66.4
Q ss_pred CCCccEEEEeccCCccccccccCCc-ccCCCCCCCcEeEeeccCcccccccccc-ccCCCcc-eEecccccCCCCCcccC
Q 001281 1001 FQQVETLRIGNSEQIKSWLQFDKPE-QGLHVLSSPEDVSIEENCMSLVSFSEVI-FLMNNLR-YLKIENSRALKSLPQEV 1077 (1108)
Q Consensus 1001 l~~L~~L~l~~~~~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~c~~l~~lp~~~-~~l~~L~-~L~l~~c~~l~~lp~~~ 1077 (1108)
+++|++|+|.+|. +..+| ..|.++++|++|++. + +++.++... .++++|+ .|++.+ +++.++...
T Consensus 225 ~~~L~~l~L~~n~-------i~~I~~~aF~~~~~L~~l~l~-~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTN-------ATTIPDFTFAQKKYLLKIKLP-H--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTBC-------CCEECTTTTTTCTTCCEEECC-T--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred cCCCeEEECCCCC-------cceecHhhhhCCCCCCEEECC-c--ccceehHHHhhCChhccEEEEEcc--cceEEchhh
Confidence 6778888888776 44444 568888888888887 2 378887744 4788888 888865 678887778
Q ss_pred CCCCCCccEEeeecCcCcccccccccc
Q 001281 1078 MGNNAQLEKLFIKYCDNIHRKKQATFI 1104 (1108)
Q Consensus 1078 l~~l~~L~~L~l~~c~~L~~~~~~~~~ 1104 (1108)
|.++++|+.|++.++ +++.++..+|-
T Consensus 293 F~~c~~L~~l~l~~n-~i~~I~~~aF~ 318 (329)
T 3sb4_A 293 FMGCDNLRYVLATGD-KITTLGDELFG 318 (329)
T ss_dssp TTTCTTEEEEEECSS-CCCEECTTTTC
T ss_pred hhCCccCCEEEeCCC-ccCccchhhhc
Confidence 888888888888654 46666665553
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.69 E-value=3.2e-08 Score=97.22 Aligned_cols=86 Identities=27% Similarity=0.342 Sum_probs=75.0
Q ss_pred CcccEEEecCcccccc-CcchhcCCCCcEEEeeCccccccchh-hhcCccCcEeeecCCcCCcccch-hccCCCCccEEe
Q 001281 595 KKLRVLSLEGYYVTQL-PNSIKELKLLRYLNVAGTQIRSLPES-TSSLMHLRVLILRDCSRLTRLPS-KMWNLINLRHLD 671 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 671 (1108)
+.|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|. .+.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEE
Confidence 6899999999999988 67799999999999999999999876 5899999999999975 666665 588999999999
Q ss_pred ecCCCCCCcCC
Q 001281 672 IEGANSLEGMP 682 (1108)
Q Consensus 672 l~~~~~~~~lp 682 (1108)
|++|. +...+
T Consensus 109 L~~N~-~~c~c 118 (170)
T 3g39_A 109 LLNNP-WDCAC 118 (170)
T ss_dssp CCSSC-BCTTB
T ss_pred eCCCC-CCCCc
Confidence 99997 44333
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=1.3e-07 Score=104.40 Aligned_cols=185 Identities=14% Similarity=0.076 Sum_probs=117.0
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
..++|+++.++.+..++.... .+.+.++|++|+||||+|+.+++...... .-...+.+..+....... .
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~-~---- 93 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS-----MPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGINV-I---- 93 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC-----CCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHHHT-T----
T ss_pred HHhhCCHHHHHHHHHHHHcCC-----CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCchHH-H----
Confidence 468999999999999886543 33489999999999999999987632111 111223333322111100 0
Q ss_pred HHhcCCCCCcccHHHHHHHHHHH--h-CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhh-hhhc-cc
Q 001281 264 ESITCKPCDLKALNEVQVQLQKA--L-DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHV-ASTM-GS 338 (1108)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~-~~ 338 (1108)
.+........ + .+++.++|+||++.-....++.+...+.....++++|+||....- ...+ ..
T Consensus 94 -------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 94 -------------REKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp -------------HHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred -------------HHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 0111111111 1 256889999999776666777777777666677889988876431 1111 11
Q ss_pred cceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHHhh
Q 001281 339 VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLGGL 397 (1108)
Q Consensus 339 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 397 (1108)
...+.+.++++++..+++...+....-. +.++....|++.++|.|..+..+...
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~-----~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLE-----LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCE-----ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 2468999999999999998776432221 12266788999999999866544433
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=2.9e-06 Score=95.58 Aligned_cols=189 Identities=14% Similarity=0.130 Sum_probs=108.1
Q ss_pred ccccCCcccEEeecCCCCCCCCCCC---CCCCccEEEEccCCC-c-cccCCCCCcccEEEEeecC-CccccCCCCCCCcc
Q 001281 878 LLAGFSSLRELSILKCPKFSGKLPE---LLPSLEILVISKCAD-L-VVPFSSFPMLCRLEIEECK-GITCSTPIDCKLIE 951 (1108)
Q Consensus 878 ~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~-l-~~~~~~l~~L~~L~l~~c~-~l~~~~~~~l~~L~ 951 (1108)
.+..+++|+.+++.++ +++ .++. ...+|+.+.+..+-. + ...|..+++|+.+.+.++- .+....+.+ .+|+
T Consensus 175 aF~~c~~L~~l~l~~n-~l~-~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKT-KIT-KLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTTCTTCCEEECTTS-CCS-EECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCS
T ss_pred HhhCcccCCeeecCCC-cce-EechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCcc
Confidence 3555666666666552 332 2332 124566666543211 0 1245556677777775432 111223333 5677
Q ss_pred EEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCC-------CcccccCCCCCccEEEEeccCCccccccccCC
Q 001281 952 SMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLE-------FGKFLKQGFQQVETLRIGNSEQIKSWLQFDKP 1024 (1108)
Q Consensus 952 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-------l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 1024 (1108)
.+.+.. .+. .+...+|..+++|+.+++.+... +..-.+.++++|+.+.|.+. +..+
T Consensus 252 ~i~lp~-~i~--------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--------i~~I 314 (401)
T 4fdw_A 252 TVKLPN-GVT--------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--------IRIL 314 (401)
T ss_dssp EEEEET-TCC--------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--------CCEE
T ss_pred EEEeCC-Ccc--------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--------eEEE
Confidence 777742 222 22345566777777777765322 22223566777777777632 2333
Q ss_pred -cccCCCCCCCcEeEeeccCccccccccccc-cCCCcceEecccccCCCCCcccCCCCCC-CccEEeeec
Q 001281 1025 -EQGLHVLSSPEDVSIEENCMSLVSFSEVIF-LMNNLRYLKIENSRALKSLPQEVMGNNA-QLEKLFIKY 1091 (1108)
Q Consensus 1025 -p~~l~~l~~L~~L~l~~~c~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~lp~~~l~~l~-~L~~L~l~~ 1091 (1108)
...|.++++|+.|.|. ++++.++...+ ++ +|+.|++.++ .+..++...|..++ +++.|++-.
T Consensus 315 ~~~aF~~c~~L~~l~lp---~~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIP---ANVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CTTTTTTCCSCCEEEEC---TTCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred hhhhhcCCCCccEEEEC---ccccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 4567788888888886 34777776444 56 8888888764 66667766777774 677777765
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.50 E-value=1e-06 Score=99.21 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=115.1
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
..++|++..++.+...+..... .+.+.|+|+.|+||||+|+.+.+...... .+.. ..+.... ....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~----~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~---~~~~~~~----~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI----HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA---TPCGVCD----NCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC----CSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCS---SCCSSSH----HHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCC----CeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCC---CCCcccH----HHHHHh
Confidence 4599999999999998865432 35788999999999999999987543211 1100 0000000 001111
Q ss_pred HH-------hcCCC-CCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-hh
Q 001281 264 ES-------ITCKP-CDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-VA 333 (1108)
Q Consensus 264 ~~-------l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 333 (1108)
.. +.... .......++...+... ..+++.+||+||+..-+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 00000 0111222222222111 135678999999976655667777777765556677777776432 21
Q ss_pred hhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 334 STM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
..+ .....+.+.+++.++..+++...+...+.. +..+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-----~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-----HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-----BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 123578999999999999988765322111 112567789999999998876554
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=2e-07 Score=103.97 Aligned_cols=85 Identities=24% Similarity=0.255 Sum_probs=38.5
Q ss_pred ccCCCcccEEEecC-ccccccC-cchhcCCCCcEEEeeCccccccch-hhhcCccCcEeeecCCcCCcccchhccCCCCc
Q 001281 591 LPKFKKLRVLSLEG-YYVTQLP-NSIKELKLLRYLNVAGTQIRSLPE-STSSLMHLRVLILRDCSRLTRLPSKMWNLINL 667 (1108)
Q Consensus 591 ~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 667 (1108)
+..+.+|++|+|++ |.++.+| ..|+++++|++|+|++|.|+.+|+ .|.+|++|++|+|++|. +..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCc
Confidence 44444455555553 4454443 334455555555555555544432 34455555555555432 33344332222225
Q ss_pred cEEeecCCC
Q 001281 668 RHLDIEGAN 676 (1108)
Q Consensus 668 ~~L~l~~~~ 676 (1108)
++|+|.+|.
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 555554443
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.5e-06 Score=92.85 Aligned_cols=173 Identities=12% Similarity=0.032 Sum_probs=103.7
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc--c--cceeEEEEeCCCCCHHHHHH
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI--K--FDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~--f~~~~wv~~~~~~~~~~~~~ 260 (1108)
.+.||+++.+++...|...- .++....+.|+|++|+|||++|+.|+++...... . --..+.+++....+...++.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i-~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL-MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 47899999999988775421 1123578899999999999999999987632110 0 11356677777778889999
Q ss_pred HHHHHhcCCCCCc-ccHHHHHHHHHHH--hCCceEEEEEeCCCCCChhhHHHHHhhhcc-CCCCc--EEEEecCchhh--
Q 001281 261 ALLESITCKPCDL-KALNEVQVQLQKA--LDGKKFLLVLDDVWNENYSLWEDLKAPFLA-AAPNS--KIIVTTRHSHV-- 332 (1108)
Q Consensus 261 ~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~iivTtR~~~v-- 332 (1108)
.|++++.+..... ...+.+...+.+. -.+++++++||++..-. .-+.+...+.+ ....+ .||.++...+.
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 9999996542211 1223333333321 24678999999995432 22223222221 11223 33333433211
Q ss_pred -------hhhccccceeeCCCCChhhHHHHHHhhhc
Q 001281 333 -------ASTMGSVEHYNLSLLSDDDCWFVFMNHAF 361 (1108)
Q Consensus 333 -------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 361 (1108)
...++ ...+.+.+++.+|-.+++.+++.
T Consensus 178 ~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11221 14689999999999999988763
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.42 E-value=1.4e-06 Score=95.64 Aligned_cols=183 Identities=12% Similarity=0.070 Sum_probs=112.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|++..++.+.+++.... .+.+.++|++|+|||++|+.+++...... .-...+.++.+.....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN-----IPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC-----CCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCT-------
T ss_pred HHHHhCCHHHHHHHHHHHhCCC-----CCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccCh-------
Confidence 3468999999999988875432 23389999999999999999987532111 1112233343321110
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHH--h-CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-hhhhc-c
Q 001281 263 LESITCKPCDLKALNEVQVQLQKA--L-DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-VASTM-G 337 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~ 337 (1108)
....+....+... + .+++.++|+|++..-.....+.+...+.....++++|+||.... +...+ .
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 1111111111111 1 25688999999966555556666666655556778888876543 21111 1
Q ss_pred ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 338 SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 338 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
....+.+.+++.++..+++...+....-. +..+....+++.++|.+..+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-----i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK-----ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC-----BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22478999999999999988776433221 12256788999999998765443
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=4.2e-06 Score=94.78 Aligned_cols=209 Identities=15% Similarity=0.119 Sum_probs=123.8
Q ss_pred cCCccceEecccCCcccccccccCCccccCCcccEEeecCCCCCC---CCCCCCCCCccEEEEccCCCcc-ccCCCCCcc
Q 001281 853 TFKTLETLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFS---GKLPELLPSLEILVISKCADLV-VPFSSFPML 928 (1108)
Q Consensus 853 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~---~~~p~~l~~L~~L~l~~~~~l~-~~~~~l~~L 928 (1108)
.+++|+.+.+.+- +..+ ....+..+++|+.+.+.+. ++ .........|+.+.+..+.... .......+|
T Consensus 160 ~c~~L~~i~l~~~--~~~I---~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 160 TCESLEYVSLPDS--METL---HNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV 232 (394)
T ss_dssp TCTTCCEEECCTT--CCEE---CTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred ccCCCcEEecCCc--ccee---ccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence 3455666655321 1111 1233555666666666431 21 1111223444444443322111 112234567
Q ss_pred cEEEEeecC-CccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcccCCCcccccCCCCCccEE
Q 001281 929 CRLEIEECK-GITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNVLEFGKFLKQGFQQVETL 1007 (1108)
Q Consensus 929 ~~L~l~~c~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L 1007 (1108)
+.+.+.... .+....+..+..|+.+.+..+... .....|..+..++.+..... .+.......+.+|+.+
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~---------i~~~~F~~~~~l~~~~~~~~-~i~~~~F~~~~~L~~i 302 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR---------IGGSLFYNCSGLKKVIYGSV-IVPEKTFYGCSSLTEV 302 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE---------ECSCTTTTCTTCCEEEECSS-EECTTTTTTCTTCCEE
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcce---------eeccccccccccceeccCce-eecccccccccccccc
Confidence 777765433 222335566777777777643221 12345557777777776542 2333335667889998
Q ss_pred EEeccCCccccccccCC-cccCCCCCCCcEeEeeccCccccccccc-cccCCCcceEecccccCCCCCcccCCCCCCCcc
Q 001281 1008 RIGNSEQIKSWLQFDKP-EQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENSRALKSLPQEVMGNNAQLE 1085 (1108)
Q Consensus 1008 ~l~~~~~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~ 1085 (1108)
.+.++ ++.+ ...|.++++|++++|. +.++.++.. +.++++|+.+.+.. +++.++..+|.++++|+
T Consensus 303 ~l~~~--------i~~I~~~aF~~c~~L~~i~lp---~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 303 KLLDS--------VKFIGEEAFESCTSLVSIDLP---YLVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLK 369 (394)
T ss_dssp EECTT--------CCEECTTTTTTCTTCCEECCC---TTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCC
T ss_pred ccccc--------cceechhhhcCCCCCCEEEeC---CcccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCC
Confidence 88653 2333 4678999999999996 458888774 44789999999964 58899888999999999
Q ss_pred EEeeec
Q 001281 1086 KLFIKY 1091 (1108)
Q Consensus 1086 ~L~l~~ 1091 (1108)
.+++..
T Consensus 370 ~i~lp~ 375 (394)
T 4fs7_A 370 KVELPK 375 (394)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 999975
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.42 E-value=3.8e-06 Score=93.01 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=107.4
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-..++|++..++++..++............|.|+|++|+|||++|+.+++.... . .+.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~---~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA---N---IKTTAAPMIEK-------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC---C---EEEEEGGGCCS--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC---C---eEEecchhccc--------
Confidence 457999999999988888642111122456899999999999999999875321 2 22233222111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC------------------CCcEEE
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA------------------PNSKII 324 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 324 (1108)
.......+.. ..+..+|++|++..-.......+...+.... ++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111111 2456789999997665555555555544321 124566
Q ss_pred EecCchhh-hhhc--cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 325 VTTRHSHV-ASTM--GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 325 vTtR~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
.||..... ...+ .....+.+.+++.++...++...+...... +..+....+++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~-----~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT-----CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE-----ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66654321 1111 112578999999999999988776432211 122667889999999996555443
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=2.5e-06 Score=96.17 Aligned_cols=100 Identities=12% Similarity=0.171 Sum_probs=55.6
Q ss_pred hhhccCCCcccEEEecCccccccC-cchhcCCCCcEEEeeCccccccc-hhhhcCccCcEeeecCCcCCcccchhccCCC
Q 001281 588 SDMLPKFKKLRVLSLEGYYVTQLP-NSIKELKLLRYLNVAGTQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPSKMWNLI 665 (1108)
Q Consensus 588 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 665 (1108)
..+|.++ +|+.+.+..+ ++.++ .+|.++ +|+.+.+.. .++.++ ..|.++.+|+.+++.+| .+..+|.......
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeec
Confidence 3445554 5666666554 55553 345443 567776664 555554 34666777777777663 3555555444456
Q ss_pred CccEEeecCCCCCCcCCcc-CCCCCCCCcc
Q 001281 666 NLRHLDIEGANSLEGMPYG-MEKLKHLQTL 694 (1108)
Q Consensus 666 ~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L 694 (1108)
+|+.+.+..+ +..++.. +..+++|+.+
T Consensus 204 ~L~~l~lp~~--l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 204 GIEEVLLPVT--LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTCTTCCCE
T ss_pred ccCEEEeCCc--hheehhhHhhCCCCCCEE
Confidence 6777766533 4444432 4455555544
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.39 E-value=4.1e-06 Score=94.86 Aligned_cols=329 Identities=10% Similarity=0.103 Sum_probs=190.2
Q ss_pred eCCCCCCCccccccccccCceeEecCccCCCChhhhhhhccCCCCCCCceEEEecCCCCCChhhhhhhhhhhcCCCCCCC
Q 001281 699 VGKDTGSGLKDLKNLKFLHGELCISGLQNVNDLREAGEAMLCEKQNLQALSLQWGSQFDSSREEVAKEHTVLDMLQPHTN 778 (1108)
Q Consensus 699 ~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 778 (1108)
+.......+.++.+|+.+.. . +.+.......|.++.+|+.+++..+- ..... ..+..+.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~l-------p--~~i~~I~~~aF~~c~~L~~i~lp~~l--~~I~~---------~aF~~c~~ 118 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKI-------P--STVREIGEFAFENCSKLEIINIPDSV--KMIGR---------CTFSGCYA 118 (394)
T ss_dssp EEEECTTTTTTCTTEEEEEC-------C--TTCCEECTTTTTTCTTCCEECCCTTC--CEECT---------TTTTTCTT
T ss_pred EeEhHHHHhhCCCCceEEEe-------C--CCccCcchhHhhCCCCCcEEEeCCCc--eEccc---------hhhccccc
Confidence 34445566888888876641 1 22334445568888999988875321 11111 12344455
Q ss_pred CCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCCCCCCCCCccEEEecCCCCceeeCcccccCcccCcCCccc
Q 001281 779 LKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLPSLSMLGSLKQLTIKGMTRLKSIGSEFYGEDILNTFKTLE 858 (1108)
Q Consensus 779 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 858 (1108)
|+.+.+..+ ...+....+. .+ .+..+.+......-.-..+.++++|+.+.+.+. +..++... ...+++|+
T Consensus 119 L~~i~~p~~-l~~i~~~aF~-~~-~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~-----F~~c~~L~ 188 (394)
T 4fs7_A 119 LKSILLPLM-LKSIGVEAFK-GC-DFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGL-----FSGCGKLK 188 (394)
T ss_dssp CCCCCCCTT-CCEECTTTTT-TC-CCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTT-----TTTCTTCC
T ss_pred chhhcccCc-eeeecceeee-cc-cccccccCccccccchhhhcccCCCcEEecCCc--cceecccc-----ccCCCCce
Confidence 555443221 1111111111 11 122222221111111125788999999999653 34454321 23466777
Q ss_pred eEecccCCcccccccccCCccccCCcccEEeecCCCCCCCCCCCCCCCccEEEEccCCCc--cccCCCCCcccEEEEeec
Q 001281 859 TLRFENLPEWECWDTKENGLLAGFSSLRELSILKCPKFSGKLPELLPSLEILVISKCADL--VVPFSSFPMLCRLEIEEC 936 (1108)
Q Consensus 859 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l--~~~~~~l~~L~~L~l~~c 936 (1108)
.+.+.. +++.+. ...+..++.|+.+.+.+.....+.......+|+.+.+...... ...+..+.+|+.+.+..+
T Consensus 189 ~i~l~~--~~~~I~---~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 189 SIKLPR--NLKIIR---DYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp BCCCCT--TCCEEC---TTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT
T ss_pred EEEcCC--CceEeC---chhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCC
Confidence 776643 122222 2346677888887776532221222233467888888654321 134567889999998765
Q ss_pred C-CccccCCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEcc-cCCCcccccCCCCCccEEEEeccCC
Q 001281 937 K-GITCSTPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISN-VLEFGKFLKQGFQQVETLRIGNSEQ 1014 (1108)
Q Consensus 937 ~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-c~~l~~~~~~~l~~L~~L~l~~~~~ 1014 (1108)
. .+....+..++.++.+....+.+ ....|..+.+|+.+.+.+ ...+......++.+|++++|.+.
T Consensus 264 ~~~i~~~~F~~~~~l~~~~~~~~~i-----------~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-- 330 (394)
T 4fs7_A 264 KLRIGGSLFYNCSGLKKVIYGSVIV-----------PEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-- 330 (394)
T ss_dssp TCEECSCTTTTCTTCCEEEECSSEE-----------CTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT--
T ss_pred cceeeccccccccccceeccCceee-----------ccccccccccccccccccccceechhhhcCCCCCCEEEeCCc--
Confidence 4 23344667788888887763322 234566899999999864 22333333567788999998543
Q ss_pred ccccccccCC-cccCCCCCCCcEeEeeccCccccccccc-cccCCCcceEecccccCCCCCcccCCCCCCCccEE
Q 001281 1015 IKSWLQFDKP-EQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKL 1087 (1108)
Q Consensus 1015 l~~~~~~~~~-p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L 1087 (1108)
++.+ ...|.++++|+++.|. .+++.++.. +.++++|+.+++.. .++.+.. .|.++++|+++
T Consensus 331 ------v~~I~~~aF~~c~~L~~i~lp---~~l~~I~~~aF~~C~~L~~i~lp~--~~~~~~~-~F~~c~~L~~I 393 (394)
T 4fs7_A 331 ------VEEIGKRSFRGCTSLSNINFP---LSLRKIGANAFQGCINLKKVELPK--RLEQYRY-DFEDTTKFKWI 393 (394)
T ss_dssp ------CCEECTTTTTTCTTCCEECCC---TTCCEECTTTBTTCTTCCEEEEEG--GGGGGGG-GBCTTCEEEEE
T ss_pred ------ccEEhHHhccCCCCCCEEEEC---ccccEehHHHhhCCCCCCEEEECC--CCEEhhh-eecCCCCCcEE
Confidence 3333 4679999999999997 348888874 44789999999964 4555554 56666776664
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.33 E-value=7.4e-07 Score=99.27 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=79.5
Q ss_pred EEEecCc-cccccCcchhcCCCCcEEEeeC-ccccccc-hhhhcCccCcEeeecCCcCCcccchhccCCCCccEEeecCC
Q 001281 599 VLSLEGY-YVTQLPNSIKELKLLRYLNVAG-TQIRSLP-ESTSSLMHLRVLILRDCSRLTRLPSKMWNLINLRHLDIEGA 675 (1108)
Q Consensus 599 ~L~L~~~-~i~~lp~~i~~l~~L~~L~Ls~-~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 675 (1108)
.++++++ .++.+|. |..+.+|++|+|++ |.|+.+| ..|++|++|++|+|++|......|..|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4588888 8999999 99999999999996 9999887 56899999999999998644444567899999999999999
Q ss_pred CCCCcCCccCCCCCCCCccC
Q 001281 676 NSLEGMPYGMEKLKHLQTLS 695 (1108)
Q Consensus 676 ~~~~~lp~~i~~L~~L~~L~ 695 (1108)
. +..+|..+.....|+.|.
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELV 109 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEE
T ss_pred c-cceeCHHHcccCCceEEE
Confidence 8 778887654444477775
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.27 E-value=1.7e-06 Score=90.64 Aligned_cols=174 Identities=14% Similarity=0.062 Sum_probs=99.5
Q ss_pred Cceeccc---hhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHH
Q 001281 184 RAVYGRD---DDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 184 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
..|+|++ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++..... ...+.|+.++...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-----GVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-----SCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH-----
Confidence 4577633 4455555555432 24678899999999999999998764321 223566665432110
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhh--HHHHHhhhccC-CCC-cEEEEecCchh-----
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSL--WEDLKAPFLAA-APN-SKIIVTTRHSH----- 331 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtR~~~----- 331 (1108)
+ .. ..+.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~-------~~-------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----S-------TA-------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----C-------GG-------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----H-------HH-------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 00 00011 346789999995533222 33333333221 122 24777776322
Q ss_pred ----hhhhccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHHH
Q 001281 332 ----VASTMGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTLG 395 (1108)
Q Consensus 332 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 395 (1108)
+...+.....+.+.+++.++..+++...+..... .+.++....+++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-----QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-----CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1111222257899999999999999887642221 1122677889999999887665443
No 169
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=3.5e-07 Score=87.92 Aligned_cols=88 Identities=9% Similarity=0.082 Sum_probs=52.6
Q ss_pred CccEEEEeccCCccccccccCCcccCCCCCCCcEeEeeccCccccccccc-ccc----CCCcceEecccccCCCCCcccC
Q 001281 1003 QVETLRIGNSEQIKSWLQFDKPEQGLHVLSSPEDVSIEENCMSLVSFSEV-IFL----MNNLRYLKIENSRALKSLPQEV 1077 (1108)
Q Consensus 1003 ~L~~L~l~~~~~l~~~~~~~~~p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~----l~~L~~L~l~~c~~l~~lp~~~ 1077 (1108)
.|++|++++|.. ....-..+.++++|++|+|+ +|..+++-.-. +.. .++|++|+|++|++++.-.-..
T Consensus 62 ~L~~LDLs~~~I------td~GL~~L~~~~~L~~L~L~-~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSCI------MSIGFDHMEGLQYVEKIRLC-KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCCC------CGGGGGGGTTCSCCCEEEEE-SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCCc------cHHHHHHhcCCCCCCEEEeC-CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 466666666662 22222334567777777777 77766653221 111 2467777777777776533333
Q ss_pred CCCCCCccEEeeecCcCccc
Q 001281 1078 MGNNAQLEKLFIKYCDNIHR 1097 (1108)
Q Consensus 1078 l~~l~~L~~L~l~~c~~L~~ 1097 (1108)
+..+++|++|+|++|++++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 45577777777777777665
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=8.3e-06 Score=90.96 Aligned_cols=195 Identities=10% Similarity=0.045 Sum_probs=113.8
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccc-eeEEEEeCCCCCHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFD-IKAWVCVSDEFDVLSISMA 261 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 261 (1108)
-..++|+++.++.+..++.... ...+.++|++|+||||+|+.+.+...... .+. ....+..+.......+ .+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKELYGPD-LMKSRILELNASDERGISIV-RE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT-----CCCEEEECSTTSSHHHHHHHHHHHHHHHH-HHTTSEEEECSSSCCCHHHH-TT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC-----CCEEEEECCCCCCHHHHHHHHHHHhCCCc-ccccceEEEccccccchHHH-HH
Confidence 3568999999999999886543 22388999999999999999987632110 111 1223333332222222 22
Q ss_pred HHHHhcCC-CCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-hhhhc-cc
Q 001281 262 LLESITCK-PCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-VASTM-GS 338 (1108)
Q Consensus 262 i~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~ 338 (1108)
.+...... ....... .....-.+++-+|++|++..-.......+...+.......++|++|.... +...+ ..
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 12111110 0000000 00011124567999999866555556667666665556677887775432 21111 11
Q ss_pred cceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 339 VEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 339 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
...+.+.+++.++....+...+....-. +.++....|++.++|.|-.+..+
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~-----i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVK-----CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC-----CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2468899999999999888776432211 12267789999999998865443
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.23 E-value=2.6e-06 Score=85.67 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=38.8
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++||+++++++.+.+.... .+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT-----KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-----SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC-----CCceEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999986532 3567899999999999999998764
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.18 E-value=2.2e-05 Score=84.38 Aligned_cols=184 Identities=15% Similarity=0.074 Sum_probs=100.9
Q ss_pred CCceeccchhHHHHHHHHhCCCC--------CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDP--------SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.+++|.++.++++.+.+...-. +-...+-+.|+|++|+|||++|+.+++.... . .+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~---~---~~~v~~~~~~~ 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA---T---FIRVVGSELVK 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC---E---EEEEEGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---C---EEEEehHHHHH
Confidence 45799999999999887643100 0012456889999999999999999886422 1 22233221110
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-----------ChhhHHHHHhhh---c--cCC
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE-----------NYSLWEDLKAPF---L--AAA 318 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~--~~~ 318 (1108)
.. ...........+......++.+|++||+..- +......+...+ . ...
T Consensus 90 --------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 --------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp --------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred --------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00 0011111222222333456789999999321 111112222222 1 123
Q ss_pred CCcEEEEecCchhhhhh-c----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCC-chHHHH
Q 001281 319 PNSKIIVTTRHSHVAST-M----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRG-LPLAAK 392 (1108)
Q Consensus 319 ~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~ 392 (1108)
.+..||.||........ . .-...+.++..+.++..+++...+.......+ .....+++.+.| .|-.+.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~------~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED------VNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT------CCHHHHHHHCTTCCHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc------CCHHHHHHHcCCCCHHHHH
Confidence 45677788875432221 1 11246889999999999999887653322111 124577777777 443444
Q ss_pred H
Q 001281 393 T 393 (1108)
Q Consensus 393 ~ 393 (1108)
.
T Consensus 229 ~ 229 (285)
T 3h4m_A 229 A 229 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.14 E-value=3e-05 Score=82.22 Aligned_cols=186 Identities=14% Similarity=0.172 Sum_probs=98.1
Q ss_pred CceeccchhHHHHHHHH---hCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHH
Q 001281 184 RAVYGRDDDKAKILDMV---LSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVL 256 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L---~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 256 (1108)
.+++|.+..++.+.+++ ..... +....+-+.|+|++|+|||++|+.+++.... . .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~---~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV---P---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---C---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C---EEEechHHHHhh-
Confidence 46889988877776553 22211 1123456789999999999999999885422 1 233443322110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC------------Ch---hhHHHHHhhhcc--CCC
Q 001281 257 SISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE------------NY---SLWEDLKAPFLA--AAP 319 (1108)
Q Consensus 257 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------------~~---~~~~~l~~~l~~--~~~ 319 (1108)
............+.......+.+|++|++..- .. .....+...+.. ...
T Consensus 79 --------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 --------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp --------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred --------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 00011112222233333456799999999542 11 112223322222 123
Q ss_pred CcEEEEecCchhhh-hhc-c---ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH-HHHH
Q 001281 320 NSKIIVTTRHSHVA-STM-G---SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL-AAKT 393 (1108)
Q Consensus 320 gs~iivTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~ 393 (1108)
+..||.||...... ... . -...+.++..+.++..+++...+.......... .....+++.+.|.+- .+..
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSST----FYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHH----HHHHHHHHTCTTCCHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchh----hHHHHHHHHCCCCCHHHHHH
Confidence 55666677654321 111 1 124678889999999998887764322211111 234678888888754 4443
Q ss_pred H
Q 001281 394 L 394 (1108)
Q Consensus 394 ~ 394 (1108)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.8e-05 Score=92.53 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=109.4
Q ss_pred CCceeccchhHHHHHHHHhCCC------------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeC
Q 001281 183 ERAVYGRDDDKAKILDMVLSDD------------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVS 250 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~------------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 250 (1108)
-.+++|++..++++..++.... .+....+.+.|+|++|+||||+|+.+++... + .++.++++
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~-~~i~in~s 111 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----Y-DILEQNAS 111 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----C-EEEEECTT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----C-CEEEEeCC
Confidence 3579999999999999986510 0011347899999999999999999998642 1 23344444
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccc-HHHHHHHHHHHhCCceEEEEEeCCCCCC---hhhHHHHHhhhccCCCCcEEEEe
Q 001281 251 DEFDVLSISMALLESITCKPCDLKA-LNEVQVQLQKALDGKKFLLVLDDVWNEN---YSLWEDLKAPFLAAAPNSKIIVT 326 (1108)
Q Consensus 251 ~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~~~l~~~l~~~~~gs~iivT 326 (1108)
...... .....+........ ... ...... .....+++.+|++|++..-. ...+..+...+.. .+..||++
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli 185 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILI 185 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEE
T ss_pred CcchHH-HHHHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEE
Confidence 443332 22222222111000 000 000000 00123578999999995432 2223444444433 23345555
Q ss_pred cCchh---hhhhccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCC-chHHHHHHHh
Q 001281 327 TRHSH---VASTMGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRG-LPLAAKTLGG 396 (1108)
Q Consensus 327 tR~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~ 396 (1108)
+.+.. +.........+.+.+++.++..+.+...+....-. +.++....|++.++| ++-++..+..
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-----i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-----LDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-----CCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 54322 22111223468999999999998887766432211 111567789999999 5555655543
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.10 E-value=3.1e-05 Score=87.97 Aligned_cols=181 Identities=17% Similarity=0.107 Sum_probs=102.2
Q ss_pred CCceeccchhH---HHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 183 ERAVYGRDDDK---AKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 183 ~~~~vGr~~~~---~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
-..++|.+..+ ..+...+.... .+.+.++|++|+||||+|+.+.+.... .| +.++.........
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~-----~~~vLL~GppGtGKTtlAr~ia~~~~~---~f-----~~l~a~~~~~~~i 91 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYANA---DV-----ERISAVTSGVKEI 91 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC-----CCEEEEECSTTSSHHHHHHHHHHHTTC---EE-----EEEETTTCCHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC-----CcEEEEECCCCCcHHHHHHHHHHHhCC---Ce-----EEEEeccCCHHHH
Confidence 34688988887 66777775443 467899999999999999999986422 22 2222211111111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEE-ecCchh--hhhh-
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIV-TTRHSH--VAST- 335 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~--v~~~- 335 (1108)
+.++... ......+++.+|++|++..-.....+.+...+.. ....+|. ||.+.. +...
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 1111110 0111246789999999976554455555555543 2234443 444432 1111
Q ss_pred ccccceeeCCCCChhhHHHHHHhhhcCCCCc--cchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 336 MGSVEHYNLSLLSDDDCWFVFMNHAFYTRDH--IHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 336 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~--~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
..-...+.+.+++.++...++.+.+...... .....+.++....+++.++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 1223578899999999999988776432110 0111233367788999999987655433
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.09 E-value=3.8e-05 Score=84.25 Aligned_cols=175 Identities=17% Similarity=0.121 Sum_probs=103.3
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-.+++|.+..++.+..++..... ..++.+.|++|+|||++|+.+++... ...+.++.+.. ... ..+..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~----~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~~~-~i~~~ 92 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKI----PHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-KID-FVRGP 92 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCC----CSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-CHH-HHHTH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCC----CeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-CHH-HHHHH
Confidence 35789999999999999875432 36788889999999999999987542 12334443331 111 11111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHH--hCCceEEEEEeCCCCCC-hhhHHHHHhhhccCCCCcEEEEecCchh-hhhhc-c
Q 001281 263 LESITCKPCDLKALNEVQVQLQKA--LDGKKFLLVLDDVWNEN-YSLWEDLKAPFLAAAPNSKIIVTTRHSH-VASTM-G 337 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~ 337 (1108)
+.. .... ..+++.+|++||+..-. .+..+.+...+.....+.++|+||.... +...+ .
T Consensus 93 ~~~-----------------~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 93 LTN-----------------FASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HHH-----------------HHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHH-----------------HHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 111 1111 12478899999996654 4455566665554445678888887543 11111 1
Q ss_pred ccceeeCCCCChhhHHHHH-------HhhhcCCCCccchhhhhh-HHHHHHHHhcCCchHHH
Q 001281 338 SVEHYNLSLLSDDDCWFVF-------MNHAFYTRDHIHVQRISG-LFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 338 ~~~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~-~~~~~i~~~c~glPLai 391 (1108)
-...+.++++++++-.+++ ...+....- .+.+ +....|++.++|.+-.+
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-----~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-----AIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-----CBSCHHHHHHHHHHTCSCTTHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CCCcHHHHHHHHHhCCCCHHHH
Confidence 1246899999988743332 222211111 1122 56678888888866543
No 177
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=1.6e-06 Score=95.69 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=36.5
Q ss_pred CCCCccEEEEeccCCccccccccCCcccC---CCCCCCcEeEeeccCccccc-----cccccccCCCcceEecccc
Q 001281 1000 GFQQVETLRIGNSEQIKSWLQFDKPEQGL---HVLSSPEDVSIEENCMSLVS-----FSEVIFLMNNLRYLKIENS 1067 (1108)
Q Consensus 1000 ~l~~L~~L~l~~~~~l~~~~~~~~~p~~l---~~l~~L~~L~l~~~c~~l~~-----lp~~~~~l~~L~~L~l~~c 1067 (1108)
.+|+|+.|++.+|.. ....+..+ ..+++|++|+|+ +|.++. ++..+.++++|+.|+|++|
T Consensus 250 ~~p~Lr~L~L~~~~i------~~~~~~~la~a~~~~~L~~LdLs--~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEE------QNVVVEMFLESDILPQLETMDIS--AGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTT------HHHHHHHHHHCSSGGGCSEEECC--SSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCC------chHHHHHHHhCccCCCCCEEECC--CCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 467788888877764 11111111 246778888887 666655 3444345778888888765
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.07 E-value=2.7e-05 Score=88.74 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=96.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
...+.|+|++|+||||||+.+++...... .-..+++++.. .+...+...+... .. ..+.+.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhcC
Confidence 46789999999999999999998542110 01123444432 2344444444321 11 123334444
Q ss_pred ceEEEEEeCCCCCCh--hhHHHHHhhhcc-CCCCcEEEEecCch---------hhhhhccccceeeCCCCChhhHHHHHH
Q 001281 290 KKFLLVLDDVWNENY--SLWEDLKAPFLA-AAPNSKIIVTTRHS---------HVASTMGSVEHYNLSLLSDDDCWFVFM 357 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 357 (1108)
+..+|++||++.-.. ...+.+...+.. ...|..||+||... .+...+.....+.+++++.++..+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 677999999954322 233344444432 34577888888752 122223333568899999999999998
Q ss_pred hhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHH
Q 001281 358 NHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAK 392 (1108)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 392 (1108)
..+....- .+.++....|++.++|.+-.+.
T Consensus 274 ~~~~~~~~-----~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 274 KMLEIEHG-----ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHTC-----CCCTTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHcCC-----CCCHHHHHHHHHhcCCCHHHHH
Confidence 77642111 1112567788999999886554
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=3.4e-05 Score=85.97 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=107.6
Q ss_pred CCceeccchhHHHHHHHH-hCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc-c--cccccccee--------------
Q 001281 183 ERAVYGRDDDKAKILDMV-LSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK-A--VSDIKFDIK-------------- 244 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~--~~~~~f~~~-------------- 244 (1108)
-.+++|.+..++.+..++ .... ... +.|+|+.|+||||+|+.++... . .....++..
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 356899999888887776 3322 123 8999999999999999887632 1 000011110
Q ss_pred ------EEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccC
Q 001281 245 ------AWVCVSDEF-DVLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAA 317 (1108)
Q Consensus 245 ------~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 317 (1108)
+.+..+... ......+++++.+..... ..... .+. .+.+++-++|+|++..-+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 111111000 000011222222211000 00000 000 02346779999999776666666777776655
Q ss_pred CCCcEEEEecCchh-hhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhh-hHHHHHHHHhcCCchHHHHHH
Q 001281 318 APNSKIIVTTRHSH-VASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRIS-GLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 318 ~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~-~~~~~~i~~~c~glPLai~~~ 394 (1108)
..+..+|++|.+.. +...+ .-...+.+.+++.++..+.+...+....-. +. ++....|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-----LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-----ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-----CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 56778888776532 22221 122578999999999999888776322111 11 266789999999988665544
Q ss_pred H
Q 001281 395 G 395 (1108)
Q Consensus 395 ~ 395 (1108)
.
T Consensus 237 l 237 (354)
T 1sxj_E 237 L 237 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 180
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.07 E-value=4.2e-07 Score=101.39 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=43.0
Q ss_pred CcccEEEecCcccccc-Ccchhc-----CCCCcEEEeeCccccc--cchhhhcCccCcEeeecCCcCCcccchhc-----
Q 001281 595 KKLRVLSLEGYYVTQL-PNSIKE-----LKLLRYLNVAGTQIRS--LPESTSSLMHLRVLILRDCSRLTRLPSKM----- 661 (1108)
Q Consensus 595 ~~Lr~L~L~~~~i~~l-p~~i~~-----l~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i----- 661 (1108)
+.|+.|+|++|.++.. ...+.. ..+|++|+|++|.+.. +..-...+.+|++|+|++|.....-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3566777777776532 222222 2567777777776652 12222345566777777764322111222
Q ss_pred cCCCCccEEeecCCC
Q 001281 662 WNLINLRHLDIEGAN 676 (1108)
Q Consensus 662 ~~L~~L~~L~l~~~~ 676 (1108)
...++|++|+|++|.
T Consensus 152 ~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 152 HDQCQITTLRLSNNP 166 (372)
T ss_dssp STTCCCCEEECCSSC
T ss_pred hcCCccceeeCCCCC
Confidence 234567777776665
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.06 E-value=1.8e-05 Score=88.82 Aligned_cols=195 Identities=15% Similarity=0.103 Sum_probs=105.6
Q ss_pred CCceeccchhHHH---HHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEe----CCCCCH
Q 001281 183 ERAVYGRDDDKAK---ILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCV----SDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----~~~~~~ 255 (1108)
...|+|++..++. +.+.+..... ..+.+.|+|++|+|||++|+.+.+...... .| +.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l~~~~-~~---~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKI---AGRAVLIAGQPGTGKTAIAMGMAQALGPDT-PF---TAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEEESTTSSHHHHHHHHHHHHCSSC-CE---EEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCC---CCCEEEEECCCCCCHHHHHHHHHHHhcccC-Cc---ccccchhhhhcccch
Confidence 4579999988776 4455544322 236889999999999999999998653211 11 12221 122233
Q ss_pred HHHHHHHHHHhcC---------------------CCC-------C--cccHHHHHHHHHHHh-----CCc----eEEEEE
Q 001281 256 LSISMALLESITC---------------------KPC-------D--LKALNEVQVQLQKAL-----DGK----KFLLVL 296 (1108)
Q Consensus 256 ~~~~~~i~~~l~~---------------------~~~-------~--~~~~~~~~~~l~~~l-----~~k----r~LlVl 296 (1108)
.+.+...+..... ... . .....++...+.+.. .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3333333332110 000 0 000112222221111 233 459999
Q ss_pred eCCCCCChhhHHHHHhhhccCCCCcEEEEecC-c----------------hhhhhhccccceeeCCCCChhhHHHHHHhh
Q 001281 297 DDVWNENYSLWEDLKAPFLAAAPNSKIIVTTR-H----------------SHVASTMGSVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 297 Ddv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
|++..-..+....+...+...... .++++|. . +.+...+ ..+.+.+++.++..+++...
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHH
Confidence 999666555666666665443333 3444442 1 1122222 34789999999999999877
Q ss_pred hcCCCCccchhhhhhHHHHHHHHhcC-CchHHHHH
Q 001281 360 AFYTRDHIHVQRISGLFHKKVVQKCR-GLPLAAKT 393 (1108)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~~c~-glPLai~~ 393 (1108)
+...... +.++....|++.+. |.|-.+..
T Consensus 272 ~~~~~~~-----~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 272 CEEEDVE-----MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHTTCC-----BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHcCCC-----CCHHHHHHHHHHhcCCCHHHHHH
Confidence 6432211 22266788888887 77755543
No 182
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=0.00042 Score=78.21 Aligned_cols=107 Identities=13% Similarity=0.171 Sum_probs=79.7
Q ss_pred CCCCCCCCCCCcEEEEcc-cCCCcccccCCCCCccEEEEeccCCccccccccCCc-ccCCCCCCCcEeEeeccCcccccc
Q 001281 972 DPPAMDSKSLPTSVTISN-VLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPE-QGLHVLSSPEDVSIEENCMSLVSF 1049 (1108)
Q Consensus 972 ~~~~~~~~~~L~~L~l~~-c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~c~~l~~l 1049 (1108)
...+|..+..|+.+.+.+ ...+.......+++|+.+.+... +..++ ..|.++.+|+++.|. ++++.+
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--------i~~I~~~aF~~c~~L~~i~lp---~~v~~I 325 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--------ITELPESVFAGCISLKSIDIP---EGITQI 325 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--------CCEECTTTTTTCTTCCEEECC---TTCCEE
T ss_pred ccceeeecccccEEecccccceecCcccccccccccccCCCc--------ccccCceeecCCCCcCEEEeC---CcccEe
Confidence 345677888899888864 22333333566788888888532 33343 578899999999996 458888
Q ss_pred ccc-cccCCCcceEecccccCCCCCcccCCCCCCCccEEeeec
Q 001281 1050 SEV-IFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKY 1091 (1108)
Q Consensus 1050 p~~-~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~ 1091 (1108)
... +.++.+|+.+.|-+ +++.++...|.++++|+.+++.+
T Consensus 326 ~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred hHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 774 44789999999954 68899888999999999999875
No 183
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=5e-06 Score=79.92 Aligned_cols=85 Identities=19% Similarity=0.240 Sum_probs=41.8
Q ss_pred CCcEEEEcccCCCcccc---cCCCCCccEEEEeccCCccccccccCCcccCCCC----CCCcEeEeeccCcccccccc-c
Q 001281 981 LPTSVTISNVLEFGKFL---KQGFQQVETLRIGNSEQIKSWLQFDKPEQGLHVL----SSPEDVSIEENCMSLVSFSE-V 1052 (1108)
Q Consensus 981 ~L~~L~l~~c~~l~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l~~l----~~L~~L~l~~~c~~l~~lp~-~ 1052 (1108)
.|++|++++|. +++.. +..+++|++|+|++|..+++. .-..+..+ ++|++|+|+ +|+++++-.- .
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~~~~~L~~L~Ls-~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDG-----CLERLSQLENLQKSMLEMEII-SCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHH-----HHHHHHTCHHHHHHCCEEEEE-SCTTCCHHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHH-----HHHHHHhcccccCCCCEEEcC-CCCcCCHHHHHH
Confidence 44555555554 33322 245555666666666543211 00112221 356666666 6666654221 1
Q ss_pred cccCCCcceEecccccCCCC
Q 001281 1053 IFLMNNLRYLKIENSRALKS 1072 (1108)
Q Consensus 1053 ~~~l~~L~~L~l~~c~~l~~ 1072 (1108)
+..+++|++|+|++|+.++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 22466677777777766654
No 184
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.95 E-value=0.00014 Score=77.23 Aligned_cols=195 Identities=14% Similarity=0.165 Sum_probs=99.5
Q ss_pred ceeccchhHHHHHH-------HHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHH
Q 001281 185 AVYGRDDDKAKILD-------MVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLS 257 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 257 (1108)
.++|.....+++.. .+.... ....+.+.|+|++|+|||++|+.+++.... .| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~--~~~~~~vLl~G~~GtGKT~la~~ia~~~~~---~~---~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD--RTPLVSVLLEGPPHSGKTALAAKIAEESNF---PF---IKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS--SCSEEEEEEECSTTSSHHHHHHHHHHHHTC---SE---EEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCC---CE---EEEeCHHH-----
Confidence 46777776665555 332111 234678999999999999999999985321 11 22222211
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC----------ChhhHHHHHhhhcc---CCCCcEEE
Q 001281 258 ISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE----------NYSLWEDLKAPFLA---AAPNSKII 324 (1108)
Q Consensus 258 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~ii 324 (1108)
+... ............+......+..+|++|++..- .......+...+.. ......||
T Consensus 101 --------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 --------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp --------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred --------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 1000 00001122223333344567899999998321 11112233332222 22334567
Q ss_pred EecCchhhhhhc---cc-cceeeCCCCCh-hhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCC------chHHHHH
Q 001281 325 VTTRHSHVASTM---GS-VEHYNLSLLSD-DDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRG------LPLAAKT 393 (1108)
Q Consensus 325 vTtR~~~v~~~~---~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLai~~ 393 (1108)
.||......... +. ...+.++++++ ++...++..... ..++....|++.+.| +.-++..
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~----------~~~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN----------FKDKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC----------SCHHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC----------CCHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 777765443321 11 24688899988 555555554211 111556788888887 4444444
Q ss_pred HHhhhcCCCChhHHHHHHh
Q 001281 394 LGGLLRTKHGDNAWEDILN 412 (1108)
Q Consensus 394 ~~~~l~~~~~~~~w~~~l~ 412 (1108)
+-.... ......+..++.
T Consensus 242 l~~a~~-~~~~~~~~~~~~ 259 (272)
T 1d2n_A 242 IEMSLQ-MDPEYRVRKFLA 259 (272)
T ss_dssp HHHHTT-SCGGGHHHHHHH
T ss_pred HHHHhh-hchHHHHHHHHH
Confidence 433322 222344554443
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.94 E-value=0.00015 Score=79.59 Aligned_cols=171 Identities=13% Similarity=0.070 Sum_probs=103.4
Q ss_pred chhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccc-------------------cccceeEEEEeC
Q 001281 190 DDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSD-------------------IKFDIKAWVCVS 250 (1108)
Q Consensus 190 ~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~~ 250 (1108)
++..+.+...+..+.. .+.+.++|+.|+|||++|+.+.+...... .+++ ..++...
T Consensus 8 ~~~~~~l~~~i~~~~~----~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRG----HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTTCC----CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCC
T ss_pred HHHHHHHHHHHHcCCc----ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecc
Confidence 4455666666654432 46789999999999999998876532111 0112 1122111
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEE
Q 001281 251 DEFDVLSISMALLESITCKPCDLKALNEVQVQLQKAL-----DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIV 325 (1108)
Q Consensus 251 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 325 (1108)
. .......++.. .+.+.+ .+++-++|+|++..-+......+...+.....++.+|+
T Consensus 83 ~------------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 83 K------------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp T------------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred c------------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 00111222222 222222 35678999999966555666677777766556777777
Q ss_pred ecCchh-hhhhc-cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 326 TTRHSH-VASTM-GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 326 TtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
+|.+.. +...+ .-...+.+.++++++..+.+..... . .++.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~--------~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--M--------SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--C--------CHHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--C--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 776542 22222 1225789999999999998887751 1 1155678999999999766543
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.85 E-value=0.00028 Score=76.97 Aligned_cols=186 Identities=15% Similarity=0.069 Sum_probs=102.8
Q ss_pred CCceeccchhHHHHHHHHhC-------CCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMVLS-------DDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.+..++.+.+.+.. -.......+-|.++|++|+|||++|+.+++.... .| +.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~---~~---~~v~~~----- 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---TF---FSVSSS----- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC---EE---EEEEHH-----
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC---CE---EEEchH-----
Confidence 45789999999999887621 0111223467899999999999999999885321 22 223221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHH-HHHhCCceEEEEEeCCCCCCh-----------hhHHHHHhhhc---cCCCC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQL-QKALDGKKFLLVLDDVWNENY-----------SLWEDLKAPFL---AAAPN 320 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~g 320 (1108)
.+ .... ....+.....+ ...-..++.+|++|++..-.. .....+...+. ....+
T Consensus 86 -~l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DL----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HH----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HH----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 1100 01112222222 222245678999999942110 11233333332 23345
Q ss_pred cEEEEecCchhhhh-hc--cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc-hHHHHHHH
Q 001281 321 SKIIVTTRHSHVAS-TM--GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL-PLAAKTLG 395 (1108)
Q Consensus 321 s~iivTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 395 (1108)
..||.||....... .+ .-...+.+...+.++-.+++...+........ . .....|++.+.|. +-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~----~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-K----EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-H----HHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-H----HHHHHHHHHcCCCCHHHHHHHH
Confidence 66666776533211 11 12246778888999999999887754322111 1 4567888888874 54554444
No 187
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.83 E-value=0.00014 Score=79.11 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=89.4
Q ss_pred ceeccchhHHHHHHHHhCC----------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 185 AVYGRDDDKAKILDMVLSD----------DPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~----------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
.++|.+..++.+.+.+... -........+.|+|++|+|||++|+.+++...... .....-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG-YVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT-SSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CcCCCcEEEEcHH--
Confidence 4788888888777654311 00112245789999999999999998876542211 1111122333211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC---------ChhhHHHHHhhhccCCCCcEEEE
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE---------NYSLWEDLKAPFLAAAPNSKIIV 325 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiv 325 (1108)
.+...... .........+... +..+|++|++..- .......+...+.....+..||.
T Consensus 109 ----------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ----------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ----------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ----------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 11110000 1111122222222 3459999999522 44555666666666666778888
Q ss_pred ecCchhh----------hhhccccceeeCCCCChhhHHHHHHhhhc
Q 001281 326 TTRHSHV----------ASTMGSVEHYNLSLLSDDDCWFVFMNHAF 361 (1108)
Q Consensus 326 TtR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 361 (1108)
||..... ...+ ...+.+++++.++-.+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 8864322 1211 25789999999999988877764
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.00026 Score=78.07 Aligned_cols=178 Identities=13% Similarity=0.148 Sum_probs=104.8
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccc-eeEEEEeCCCCCHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFD-IKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 262 (1108)
..++|.+..++.+...+..+. ...+.++|+.|+||||+|+.++...... .+. .+.-++.+.......+ ++.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~-----~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREIYGK--NYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-----CCCEEEECSSSSSHHHHHHHHHHHHHTT--SHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CceEEEECCCCCCHHHHHHHHHHHHcCC--CccceEEEEcCcccccHHHH-HHH
Confidence 457899888888888876543 2238899999999999999998753211 111 1122222221111111 111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHH---HhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh-hhhhc-c
Q 001281 263 LESITCKPCDLKALNEVQVQLQK---ALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH-VASTM-G 337 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~---~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~ 337 (1108)
+ ..+.+ ...+.+-++|+|++..-.....+.+...+......+++|++|.... +...+ .
T Consensus 97 i-----------------~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 97 I-----------------KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp H-----------------HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred H-----------------HHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 1 11111 0123477899999965555566667666665556677777775432 11111 1
Q ss_pred ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHH
Q 001281 338 SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAA 391 (1108)
Q Consensus 338 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 391 (1108)
-...+.+.++++++..+.+...+....-. +.++....|++.++|.+-.+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~-----i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLK-----LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCC-----BCHHHHHHHHHHHTTCHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 12468899999999888887665321111 12256778899999987644
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.78 E-value=0.00077 Score=73.20 Aligned_cols=189 Identities=16% Similarity=0.120 Sum_probs=100.8
Q ss_pred CCceeccchhHHHHHHHHhC----CC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMVLS----DD---PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.++.++.+.+.+.. ++ ......+-|.++|++|+|||+||+.+++..... . .+.++.+.-.+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~---~~~i~~~~l~~- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--T---FFSISSSDLVS- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--E---EEEEECCSSCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--c---EEEEEhHHHHh-
Confidence 35789999888888776531 10 011234678899999999999999999864110 1 22233332110
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-------ChhhH----HHHHhhhcc---CCCCc
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE-------NYSLW----EDLKAPFLA---AAPNS 321 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~~~~~----~~l~~~l~~---~~~gs 321 (1108)
.... .....+...+...-..++.+|++|++..- ..... ..+...+.. ...+.
T Consensus 85 -------------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 -------------KWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -------------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -------------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 0000 11111112222222357899999999432 00111 122222221 23445
Q ss_pred EEEEecCchhhhh-hc--cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc-hHHHHHHHh
Q 001281 322 KIIVTTRHSHVAS-TM--GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL-PLAAKTLGG 396 (1108)
Q Consensus 322 ~iivTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 396 (1108)
.||.||....... .+ .-...+.+...+.++..+++.......... + .+.....|++.+.|. +-.|..+..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--L---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--C---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--C---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665665432111 11 122467888888888888888776432211 1 114567899999887 444554443
No 190
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.78 E-value=0.00037 Score=77.13 Aligned_cols=187 Identities=13% Similarity=0.072 Sum_probs=101.3
Q ss_pred CCceeccchhHHHHHHHHhC----CCC---CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMVLS----DDP---SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.+..++.+.+.+.. +.. .....+.|.|+|++|+|||++|+.+++.... ..+.++.+.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~------~~~~i~~~~l~~- 155 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA------TFFSISASSLTS- 155 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC------EEEEEEGGGGCC-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC------eEEEEehHHhhc-
Confidence 34689999999998887642 110 0122467889999999999999999875321 123444432111
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHH-HHHHhCCceEEEEEeCCCCC-----------ChhhHHHHHhhhcc----CCC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQ-LQKALDGKKFLLVLDDVWNE-----------NYSLWEDLKAPFLA----AAP 319 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~----~~~ 319 (1108)
.. .......... +...-..++.+|+||++..- .......+...+.. ...
T Consensus 156 -------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 -------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp -------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred -------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00 0011111111 22222356789999998211 00112233333322 123
Q ss_pred CcEEEEecCchh-hhhhc--cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCC-chHHHHHHH
Q 001281 320 NSKIIVTTRHSH-VASTM--GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRG-LPLAAKTLG 395 (1108)
Q Consensus 320 gs~iivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~ 395 (1108)
+..||.||.... +...+ .-...+.+...+.++..+++...+...... +.++....|++.+.| .+-.+..+.
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-----l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-----LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-----CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-----ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445665665432 21111 112457788888888888887766432211 112567788999988 555665554
Q ss_pred h
Q 001281 396 G 396 (1108)
Q Consensus 396 ~ 396 (1108)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=89.83 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=52.6
Q ss_pred CCCcccEEEecCccccc-----cCcchhcCCCCcEEEeeCccccc-----cchhhhcCccCcEeeecCCcCCc----ccc
Q 001281 593 KFKKLRVLSLEGYYVTQ-----LPNSIKELKLLRYLNVAGTQIRS-----LPESTSSLMHLRVLILRDCSRLT----RLP 658 (1108)
Q Consensus 593 ~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~----~lp 658 (1108)
....|++|+|++|.++. ++..+..+++|++|+|++|.|.. ++..+...++|++|+|++|.... .++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 45667777777777653 44455666777777777776652 34556666677777777764321 233
Q ss_pred hhccCCCCccEEeecCCC
Q 001281 659 SKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 659 ~~i~~L~~L~~L~l~~~~ 676 (1108)
..+...++|++|+|++|.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHCSSCCEEECTTSS
T ss_pred HHHHhCCCCCEEeccCCC
Confidence 444556677777777775
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.77 E-value=0.00077 Score=72.66 Aligned_cols=184 Identities=14% Similarity=0.101 Sum_probs=98.7
Q ss_pred CCceeccchhHHHHHHHHhCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDD-------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.+..++.+.+.+..+. .-....+.+.|+|++|+||||+|+.++..... . .+.++.+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~---~---~~~i~~~~l~~- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA---T---FLNISAASLTS- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC---E---EEEEESTTTSS-
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC---C---eEEeeHHHHhh-
Confidence 3569999999999888763210 00012467899999999999999999885421 1 22333332111
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHH-HHHHHhCCceEEEEEeCCCCCC-----------hhhHHHHHhhhccC-----C
Q 001281 256 LSISMALLESITCKPCDLKALNEVQV-QLQKALDGKKFLLVLDDVWNEN-----------YSLWEDLKAPFLAA-----A 318 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-----~ 318 (1108)
... .......+ .+......++.+|++|++..-. ......+...+... +
T Consensus 93 -------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------KYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------SSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------ccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 01112222 2222223567899999983321 11111222222211 1
Q ss_pred CCcEEEEecCchh-----hhhhccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH-HHH
Q 001281 319 PNSKIIVTTRHSH-----VASTMGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL-AAK 392 (1108)
Q Consensus 319 ~gs~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~ 392 (1108)
.+..||.||.... +...+ ...+.+...+.++...++...+...... +.+.....+++.+.|.+- ++.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSP-----LDTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCC-----SCHHHHHHHHHHTTTCCHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHcCCCCHHHHH
Confidence 3455666776532 22211 2456777777777777777665332211 112556788899998775 554
Q ss_pred HHH
Q 001281 393 TLG 395 (1108)
Q Consensus 393 ~~~ 395 (1108)
.+.
T Consensus 231 ~l~ 233 (297)
T 3b9p_A 231 ALA 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.77 E-value=2.7e-05 Score=77.57 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=38.6
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++||+.+++.+.+.+.... .+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~-----~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT-----KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-----SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC-----CCceEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999986532 3567899999999999999998754
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.76 E-value=0.00023 Score=77.90 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=86.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
...+.|+|++|+||||||+.+++.....+ ..+++++.. .+...+...+... .... +.+.+ .
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~---~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~-~ 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMY-K 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHH-H
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHh-c
Confidence 45788999999999999999998542211 123444432 2333333333211 1111 12222 2
Q ss_pred ceEEEEEeCCCCCCh--hhHHHHHhhhcc-CCCCcEEEEecCchh---------hhhhccccceeeCCCCChhhHHHHHH
Q 001281 290 KKFLLVLDDVWNENY--SLWEDLKAPFLA-AAPNSKIIVTTRHSH---------VASTMGSVEHYNLSLLSDDDCWFVFM 357 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 357 (1108)
+..+|++||+..-.. ...+.+...+.. ...|..||+||.... +...+.....+.+++ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 366999999954322 223334444332 234567888876421 122222225688999 9999999888
Q ss_pred hhhcCCCCccchhhhhhHHHHHHHHhcCCchH
Q 001281 358 NHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL 389 (1108)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 389 (1108)
..+..... .+.++....|++.+ |..-
T Consensus 177 ~~~~~~~~-----~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 177 EKLKEFNL-----ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTTC-----CCCHHHHHHHHHHC-SSHH
T ss_pred HHHHhcCC-----CCCHHHHHHHHHhC-CCHH
Confidence 87642221 11225677888888 7654
No 195
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.73 E-value=4.5e-05 Score=72.13 Aligned_cols=114 Identities=14% Similarity=-0.023 Sum_probs=69.7
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHH
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLE 264 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 264 (1108)
.++|+...+.++.+.+..-... ..-|.|+|.+|+|||++|+.+++.....+ .. .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~---~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET---DIAVWLYGAPGTGRMTGARYLHQFGRNAQ--GE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC---CSCEEEESSTTSSHHHHHHHHHHSSTTTT--SC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhCC---CCCEEEECCCCCCHHHHHHHHHHhCCccC--CC-EE-EECCCCCcc---------
Confidence 5789999999888877432111 13467999999999999999998643222 11 22 555433221
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCc
Q 001281 265 SITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRH 329 (1108)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 329 (1108)
..... .+... +...|++|++..-.......+...+.......+||.||..
T Consensus 66 ---------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 01111 11111 2347899999776666666777776555556788888764
No 196
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.72 E-value=0.0018 Score=72.62 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=25.5
Q ss_pred CCCCCCCCeEEEeecCCCCCccccccCCcCcceEEEEeCCCCCCCCC--CCCCCCCccEEEecC
Q 001281 773 LQPHTNLKKLAITSYSGENFPMWIGDLSFSKMEVLELQNCQNCTSLP--SLSMLGSLKQLTIKG 834 (1108)
Q Consensus 773 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~ 834 (1108)
+..+.+|+++.+..+ ...++...+.. .+|+.+.+..+ ...+. .+.. .+|+.+.+.+
T Consensus 65 F~~C~~L~~I~lp~~-v~~Ig~~aF~~--c~l~~i~~~~~--l~~I~~~aF~~-~~L~~i~lp~ 122 (379)
T 4h09_A 65 FNSCYNMTKVTVAST-VTSIGDGAFAD--TKLQSYTGMER--VKKFGDYVFQG-TDLDDFEFPG 122 (379)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTT--CCCCEEEECTT--CCEECTTTTTT-CCCSEEECCT
T ss_pred hhCCCCCCEEEeCCc-ceEechhhhcC--CCCceEECCce--eeEeccceecc-CCcccccCCC
Confidence 455667777776432 33333333221 24555555433 12222 2322 3566666643
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.70 E-value=0.00046 Score=76.16 Aligned_cols=187 Identities=14% Similarity=0.072 Sum_probs=99.4
Q ss_pred CCceeccchhHHHHHHHHhCC----C---CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMVLSD----D---PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.+..++.+.+.+... . ......+-|.++|++|+|||++|+.+++.... .| +.+..+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~---~~v~~~----- 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---TF---FSVSSS----- 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC---EE---EEEEHH-----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CE---EEeeHH-----
Confidence 346899999999988776211 0 01122356789999999999999999986421 11 222221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh-----------hHHHHHhhhcc---CCCCc
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYS-----------LWEDLKAPFLA---AAPNS 321 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs 321 (1108)
++ .... .. .........+...-..++.+|+||++..-... ....+...+.. ...+.
T Consensus 119 -~l----~~~~----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 -DL----VSKW----MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp -HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred -HH----hhhh----cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 11 1110 00 01111111222222357899999999432110 12223332221 23455
Q ss_pred EEEEecCchhhhh-hc--cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc-hHHHHHHH
Q 001281 322 KIIVTTRHSHVAS-TM--GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL-PLAAKTLG 395 (1108)
Q Consensus 322 ~iivTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 395 (1108)
.||.||....... .+ .-...+.+...+.++-.+++.......... + .+.....|++.+.|. +-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--L---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--C---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--C---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666665432111 11 122467788888888888888776433211 1 114567888999884 44454443
No 198
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.70 E-value=7.6e-05 Score=73.72 Aligned_cols=121 Identities=19% Similarity=0.144 Sum_probs=63.8
Q ss_pred cchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 189 RDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
....++.+.++...-.. .....+.|+|++|+||||||+.++....... .+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~--~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP--EEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG--GGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--cCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CC-eEEEEE------HHHHHHHHHHHhcC
Confidence 34444555555433221 1246899999999999999999987643111 11 223333 33444444433322
Q ss_pred CCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHH--HHHhhhcc-CCCCcEEEEecCc
Q 001281 269 KPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWE--DLKAPFLA-AAPNSKIIVTTRH 329 (1108)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~ 329 (1108)
.... ..... +. +.-+|||||++......|. .+...+.. ...|..||+||..
T Consensus 89 ~~~~-----~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1111 11111 11 4568999999743333343 33333322 2356788888874
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=2.8e-05 Score=80.97 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=45.9
Q ss_pred cCCCcccEEEecCcccccc---CcchhcCCCCcEEEeeCccccccchhhhcCc--cCcEeeecCCcCCcccch-------
Q 001281 592 PKFKKLRVLSLEGYYVTQL---PNSIKELKLLRYLNVAGTQIRSLPESTSSLM--HLRVLILRDCSRLTRLPS------- 659 (1108)
Q Consensus 592 ~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~--~L~~L~l~~~~~~~~lp~------- 659 (1108)
.+++.|+.|+|++|.++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4556677777777776644 34556677777777777776655 2233333 666666666553333331
Q ss_pred hccCCCCccEEe
Q 001281 660 KMWNLINLRHLD 671 (1108)
Q Consensus 660 ~i~~L~~L~~L~ 671 (1108)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244566666664
No 200
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.63 E-value=2.8e-05 Score=85.82 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=27.2
Q ss_pred chhcCCCCcEEEeeCccccccchhhhcCccCcEeeecCCcCCcccchhcc--CCCCccEEeec
Q 001281 613 SIKELKLLRYLNVAGTQIRSLPESTSSLMHLRVLILRDCSRLTRLPSKMW--NLINLRHLDIE 673 (1108)
Q Consensus 613 ~i~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~--~L~~L~~L~l~ 673 (1108)
.+..+++|+.|+|+++.-..+|. + .+++|++|++..|.........+. .+++|++|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34445566666665552123333 2 255666666655432111111222 45666666654
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.60 E-value=0.00083 Score=72.33 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=97.4
Q ss_pred CCceeccchhHHHHHHHHhCC--------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLSD--------DPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.+++|.++.++++.+++... ..+-...+.|.|+|++|+|||++|+.+++.... .| +.++
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~---~~-----i~v~---- 81 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NF-----ISIK---- 81 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---EE-----EEEC----
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC---CE-----EEEE----
Confidence 346899999888888776421 000112467899999999999999999986421 21 2222
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC--------------hhhHHHHHhhhcc--CC
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN--------------YSLWEDLKAPFLA--AA 318 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~ 318 (1108)
..++.... .+.. .... ...+.......+.+|++|++..-. ......+...+.. ..
T Consensus 82 ~~~l~~~~---~g~~---~~~~---~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELLTMW---FGES---EANV---REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHHH---HTTC---TTHH---HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHHhhh---cCch---HHHH---HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 22222221 1111 1111 222233334568999999994200 0112333333332 22
Q ss_pred CCcEEEEecCchhhhh-h-cc---ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHH
Q 001281 319 PNSKIIVTTRHSHVAS-T-MG---SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLA 390 (1108)
Q Consensus 319 ~gs~iivTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 390 (1108)
.+..||.||....... . .. -...+.+...+.++-.+++...........+ .....+++.+.|.|=+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~------~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD------VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS------CCHHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc------chHHHHHHHcCCCCHH
Confidence 4566777776543221 1 11 2246888888988888888776643221111 1124566667776543
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.59 E-value=0.0024 Score=69.83 Aligned_cols=178 Identities=17% Similarity=0.186 Sum_probs=93.8
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
-..++|.+..++.+...+......+.....+.++|++|+||||||+.++..... .|. ..-+....
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---~~~----~~sg~~~~-------- 88 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT---NIH----VTSGPVLV-------- 88 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC---CEE----EEETTTCC--------
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEE----EEechHhc--------
Confidence 346788887777766555322000122467899999999999999999985422 111 11111100
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC------------------CCcEEE
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA------------------PNSKII 324 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 324 (1108)
...++.. +...+ .++.++++|++..-.....+.+...+.... +...++
T Consensus 89 ------------~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 89 ------------KQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ------------SHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ------------CHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 0011111 11122 234577788875443333344432222111 012222
Q ss_pred -EecCchhhhhhcc--ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchHHHHHH
Q 001281 325 -VTTRHSHVASTMG--SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKTL 394 (1108)
Q Consensus 325 -vTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 394 (1108)
.|++...+..... ....+.+++.+.++-.+++.+.+...... +.++.+..|+++++|.|-.+..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~-----~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE-----IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC-----BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHhcCCChHHHHHH
Confidence 2444332221111 11247899999999999998776322111 12267889999999999655433
No 203
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.56 E-value=0.0013 Score=73.69 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=98.6
Q ss_pred cCCceeccchhHHHHHHHHhCC----CC---CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 182 TERAVYGRDDDKAKILDMVLSD----DP---SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
.-.+++|.+..++.+.+++... .. .....+-|.|+|++|+|||++|+.+++.... ..+.++.+.-..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~------~~~~v~~~~l~~ 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA------TFFNISAASLTS 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC------EEEEECSCCC--
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC------cEEEeeHHHhhc
Confidence 3457999999999998877211 00 0012467899999999999999999875321 122333322111
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-----------ChhhHHHHHhhhcc----CCC
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE-----------NYSLWEDLKAPFLA----AAP 319 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~----~~~ 319 (1108)
. . .+ .........+...-...+.+|+||++..- .......+...+.. ...
T Consensus 187 ~--~-------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 K--Y-------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred c--c-------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 0 00 00111111122222345689999999321 01111222222221 123
Q ss_pred CcEEEEecCchhhh-hhc--cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCchH-HHHHHH
Q 001281 320 NSKIIVTTRHSHVA-STM--GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLPL-AAKTLG 395 (1108)
Q Consensus 320 gs~iivTtR~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 395 (1108)
...||.||...... ..+ .-...+.+...+.++..+++...+...... +.++....|++.+.|..- ++..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-----l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-----LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-----SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34556566543211 111 111357888889999989888776433221 112566788899888544 555543
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.56 E-value=0.001 Score=75.81 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=99.8
Q ss_pred CCceeccchhHHHHHHHHhC----CCC---CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMVLS----DDP---SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.+..++.+.+.+.. +.. .....+-|.++|++|+|||+||+.+++.... .-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-------~~~~~v~~~~-- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-------STFFSISSSD-- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-------SEEEEECCC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-------CCEEEEeHHH--
Confidence 45789999999988877621 110 0122467889999999999999999986411 1223333211
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC-------hhh----HHHHHhhhcc---CCCCc
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN-------YSL----WEDLKAPFLA---AAPNS 321 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~----~~~l~~~l~~---~~~gs 321 (1108)
+... ..+.. ......+.. ..-..++.+|+||++..-. ... ...+...+.. ...+.
T Consensus 204 --l~~~---~~g~~---~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 --LVSK---WLGES---EKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp -------------C---CCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred --HHhh---hcchH---HHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 1100 01111 111222221 1223568899999995321 011 1222222222 23456
Q ss_pred EEEEecCchhhhhh-c--cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc-hHHHHHHH
Q 001281 322 KIIVTTRHSHVAST-M--GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL-PLAAKTLG 395 (1108)
Q Consensus 322 ~iivTtR~~~v~~~-~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 395 (1108)
.||.||........ + .-...+.+...+.++...+|...+..... .+ .+.....|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--EC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67767765422111 1 11246778888888888888877643221 11 114567888999884 44444443
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=7.1e-05 Score=74.14 Aligned_cols=114 Identities=18% Similarity=0.071 Sum_probs=66.2
Q ss_pred ccCCCCceEEeeeee-cCCCCCccchhhhhhhhccCCCcccEEEecCccccc-----cCcchhcCCCCcEEEeeCccccc
Q 001281 559 LYEVPHLRTFLPVFI-RGGTDTSYITNVLLSDMLPKFKKLRVLSLEGYYVTQ-----LPNSIKELKLLRYLNVAGTQIRS 632 (1108)
Q Consensus 559 ~~~~~~Lr~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~Ls~~~i~~ 632 (1108)
+...+.|++|.+..+ ... ......+...+...+.|++|+|++|.+.. +...+...+.|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~----~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP----VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC----HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCCC----HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 344566666666544 321 11122334455666777777777777652 34455566677777777777663
Q ss_pred -----cchhhhcCccCcEeee--cCCcCCcc----cchhccCCCCccEEeecCCC
Q 001281 633 -----LPESTSSLMHLRVLIL--RDCSRLTR----LPSKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 633 -----lp~~i~~L~~L~~L~l--~~~~~~~~----lp~~i~~L~~L~~L~l~~~~ 676 (1108)
+...+...++|++|+| ++|..-.. +...+...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4556666677777777 55542211 33344555677777777665
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=0.00043 Score=74.14 Aligned_cols=149 Identities=9% Similarity=0.027 Sum_probs=92.5
Q ss_pred ccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc-ccccccceeEEEEeCC-CCCHHHHHHHHHHH
Q 001281 188 GRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKA-VSDIKFDIKAWVCVSD-EFDVLSISMALLES 265 (1108)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 265 (1108)
|-++.++.+...+..+. .+...++|+.|+||||+|+.+.+... ....+.+. .++..+. ...+.. .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~~-----~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-----GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS-----SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC-----CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHH
Confidence 34556667777775443 57889999999999999999976421 10002332 3343322 222222 2223333
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch-hhhhhccccceeeC
Q 001281 266 ITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS-HVASTMGSVEHYNL 344 (1108)
Q Consensus 266 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l 344 (1108)
+...+ ..+++-++|+|++..-+....+.+...+....+.+.+|++|.+. .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32111 12457789999997766667777887777666777888776543 444444444 8999
Q ss_pred CCCChhhHHHHHHhhh
Q 001281 345 SLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 345 ~~L~~~~~~~lf~~~~ 360 (1108)
.++++++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999998887765
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.51 E-value=2.6e-05 Score=81.18 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=72.8
Q ss_pred cCCCcccE--EEecCccccccCcc----hhcCCCCcEEEeeCcccccc---chhhhcCccCcEeeecCCcCCcccchhcc
Q 001281 592 PKFKKLRV--LSLEGYYVTQLPNS----IKELKLLRYLNVAGTQIRSL---PESTSSLMHLRVLILRDCSRLTRLPSKMW 662 (1108)
Q Consensus 592 ~~l~~Lr~--L~L~~~~i~~lp~~----i~~l~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~i~ 662 (1108)
...+.|+. ++++.|....++.. ..++++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+ ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhh
Confidence 33444554 56677754444332 25789999999999999865 4677899999999999975 5554 3355
Q ss_pred CCC--CccEEeecCCCCCCcCCc-------cCCCCCCCCccCce
Q 001281 663 NLI--NLRHLDIEGANSLEGMPY-------GMEKLKHLQTLSNF 697 (1108)
Q Consensus 663 ~L~--~L~~L~l~~~~~~~~lp~-------~i~~L~~L~~L~~~ 697 (1108)
.+. +|++|+|++|.....+|. .+..+++|+.|+..
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 555 999999999985444552 25677777777643
No 208
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.50 E-value=0.005 Score=69.30 Aligned_cols=274 Identities=14% Similarity=0.163 Sum_probs=155.8
Q ss_pred cceEEEEeCCCCCCCCC--CCCCCCCccEEEecCC--CCceeeCcccccCcccCcCCccceEecccCCcccccccccCCc
Q 001281 803 KMEVLELQNCQNCTSLP--SLSMLGSLKQLTIKGM--TRLKSIGSEFYGEDILNTFKTLETLRFENLPEWECWDTKENGL 878 (1108)
Q Consensus 803 ~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~--~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 878 (1108)
.|+.+.|-+. .+.+. .|.++++|+.+.+..+ ..++.++..- ...+.+|+.+.+.+ ++..+. ...
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a-----F~~c~~L~~i~~~~--~~~~I~---~~a 132 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA-----FMFCSELTDIPILD--SVTEID---SEA 132 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT-----TTTCTTCCBCGGGT--TCSEEC---TTT
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh-----chhcccceeeccCC--ccceeh---hhh
Confidence 5889988764 23333 5888999999999765 3466665431 12345555554432 122222 234
Q ss_pred cccCCcccEEeecCCC-CCCCCCCCCCCCccEEEEccCCCc-c-ccCCCCCcccEEEEeecC-CccccCCCCCCCccEEE
Q 001281 879 LAGFSSLRELSILKCP-KFSGKLPELLPSLEILVISKCADL-V-VPFSSFPMLCRLEIEECK-GITCSTPIDCKLIESMT 954 (1108)
Q Consensus 879 ~~~~~~L~~L~l~~c~-~l~~~~p~~l~~L~~L~l~~~~~l-~-~~~~~l~~L~~L~l~~c~-~l~~~~~~~l~~L~~L~ 954 (1108)
+..+.+|+.+.+.+.- .+.........+|+.+.+...-.. . ..| ...+|+.+.+...- ......+..+.++....
T Consensus 133 F~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAF-TGTALTQIHIPAKVTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTT-TTCCCSEEEECTTCCEECTTTTTTCTTCCEEE
T ss_pred hhhhcccccccccceeeeecccceecccccccccccceeeEeccccc-cccceeEEEECCcccccccchhhhccccceec
Confidence 6678888888885421 111112224566777776543211 1 122 23567777775443 22234556677777776
Q ss_pred EecCCcccccccCccc-----CCCCCCCCCCCCcEEEEcc-cCCCcccccCCCCCccEEEEeccCCccccccccCCcccC
Q 001281 955 ISNSSLQIYGCEGMIF-----NDPPAMDSKSLPTSVTISN-VLEFGKFLKQGFQQVETLRIGNSEQIKSWLQFDKPEQGL 1028 (1108)
Q Consensus 955 l~~n~~~~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~-c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~p~~l 1028 (1108)
...+............ .....+.....+..+.+.+ ...+.......+.+|+.+.+.+.- .......|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-------~~I~~~aF 284 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-------VSIGTGAF 284 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-------CEECTTTT
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-------ceecCccc
Confidence 6544332221100000 0000011222333333321 111112224556778888875543 22334678
Q ss_pred CCCCCCcEeEeeccCccccccccccc-cCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCccccccccc
Q 001281 1029 HVLSSPEDVSIEENCMSLVSFSEVIF-LMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKKQATF 1103 (1108)
Q Consensus 1029 ~~l~~L~~L~l~~~c~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~~~~~ 1103 (1108)
.++++|+.+.+. +.++.++...+ ++++|+.+.|.. +++.++...|.++.+|+.+.|.. +++.++..+|
T Consensus 285 ~~c~~L~~i~l~---~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF 353 (394)
T 4gt6_A 285 MNCPALQDIEFS---SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAF 353 (394)
T ss_dssp TTCTTCCEEECC---TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGG
T ss_pred ccccccccccCC---CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHh
Confidence 899999999996 67888988544 789999999964 68899888999999999999953 3555555544
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0012 Score=72.29 Aligned_cols=179 Identities=17% Similarity=0.094 Sum_probs=97.1
Q ss_pred CCceeccchhHHHHHHHHhC----CC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLS----DD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.++.|-++.+++|.+.+.- ++ .+-..++-|-++|++|.|||.||+++++.... .| +.|..+.-.+
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---~f---~~v~~s~l~s 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC---KF---IRVSGAELVQ 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC---EE---EEEEGGGGSC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC---Cc---eEEEhHHhhc
Confidence 35688999888888765431 10 01223567889999999999999999986432 22 3333332111
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC--------hh------hHHHHHhhhcc--CC
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN--------YS------LWEDLKAPFLA--AA 318 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~------~~~~l~~~l~~--~~ 318 (1108)
.. -......+...+...-...+++|++|++..-. .. ....+...+.. ..
T Consensus 221 --------------k~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 --------------KY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp --------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred --------------cc-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 00 00111111122222224568999999984310 00 11222222322 23
Q ss_pred CCcEEEEecCchhhhhh-----ccccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 319 PNSKIIVTTRHSHVAST-----MGSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 319 ~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
.+..||.||...+..+. -.-+..+.++..+.++-.++|..+........+. ...++++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv------dl~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI------NLRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC------CHHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC------CHHHHHHHCCCCC
Confidence 45566677765433221 1233678898888888888887766432221111 1357778887753
No 210
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.45 E-value=7.1e-05 Score=75.56 Aligned_cols=125 Identities=22% Similarity=0.196 Sum_probs=63.8
Q ss_pred ceeccc----hhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHH
Q 001281 185 AVYGRD----DDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 185 ~~vGr~----~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
.|++.. ..++.+.+++...... ...+.+.|+|++|+|||+||+.+++.... ....++|++++ .+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPG-KKMKGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVP------ELFR 95 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSS-CCCCEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHH------HHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhH------HHHH
Confidence 455543 3444555555433211 11267889999999999999999986532 22345566543 3344
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHH--HHh-hhccC-CCCcEEEEecCc
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWED--LKA-PFLAA-APNSKIIVTTRH 329 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtR~ 329 (1108)
.+....... ........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 96 ~~~~~~~~~-----~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 96 ELKHSLQDQ-----TMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHC---C-----CCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhccc-----hHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 443332211 12222222221 2399999996643333321 221 12111 345678888874
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.44 E-value=0.00022 Score=67.11 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=63.2
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHH
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLE 264 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 264 (1108)
.++|++..+.++.+.+..-... ..-|.|+|.+|+|||++|+.+++... -|+.+.-. .... ..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~---~~~vll~G~~GtGKt~lA~~i~~~~~---------~~~~~~~~-~~~~---~~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR---TSPVFLTGEAGSPFETVARYFHKNGT---------PWVSPARV-EYLI---DM-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC---SSCEEEEEETTCCHHHHHGGGCCTTS---------CEECCSST-THHH---HC--
T ss_pred CceeCCHHHHHHHHHHHHHhCC---CCcEEEECCCCccHHHHHHHHHHhCC---------CeEEechh-hCCh---Hh--
Confidence 5789998888888776431111 13467999999999999999987532 12222211 1100 00
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccC-CCCcEEEEecCc
Q 001281 265 SITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAA-APNSKIIVTTRH 329 (1108)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 329 (1108)
...+.+.. +.-.|++|++..-.......+...+... ..+.+||+||..
T Consensus 67 ---------------~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 01111111 2347899999776666666666655543 345788888763
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.43 E-value=0.00082 Score=77.00 Aligned_cols=184 Identities=14% Similarity=0.137 Sum_probs=100.4
Q ss_pred CceeccchhHHHHHHHHhCCC--------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 184 RAVYGRDDDKAKILDMVLSDD--------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
..++|.+..++++.+++...- .+....+-|.|+|++|+|||++|+.+++.... .| +.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~---~f---v~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FF---FLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS---EE---EEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC---CE---EEEEch-----
Confidence 468999999999888764210 00112356889999999999999999875321 22 233321
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCC--------CC---hhhHHHHHhhhcc--CCCCcE
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWN--------EN---YSLWEDLKAPFLA--AAPNSK 322 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--------~~---~~~~~~l~~~l~~--~~~gs~ 322 (1108)
+ +...+ . ..........+.....+++.+|+||++.. .. ......+...+.. ...+..
T Consensus 273 -~----l~~~~----~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 -E----IMSKL----A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -H----HHTSC----T-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -H----hhhhh----c-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 11110 0 11112223334444456789999999821 01 0122334444432 223456
Q ss_pred EEEecCchh-hhhhc----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc-hHHHHHH
Q 001281 323 IIVTTRHSH-VASTM----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL-PLAAKTL 394 (1108)
Q Consensus 323 iivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 394 (1108)
||.||.... +...+ .-...+.+...+.++-.+++..++.......+ ....++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~------~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD------VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT------CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch------hhHHHHHHHccCCcHHHHHHH
Confidence 666666542 22222 11246889999999999999877643221111 1235677777774 5444443
No 213
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.37 E-value=5.8e-05 Score=74.78 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=73.2
Q ss_pred hhhhhhccCCCcccEEEecCc-ccc-----ccCcchhcCCCCcEEEeeCccccc-----cchhhhcCccCcEeeecCCcC
Q 001281 585 VLLSDMLPKFKKLRVLSLEGY-YVT-----QLPNSIKELKLLRYLNVAGTQIRS-----LPESTSSLMHLRVLILRDCSR 653 (1108)
Q Consensus 585 ~~~~~~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l~~~~~ 653 (1108)
..+...+...+.|++|+|++| .+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++|..
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345567888999999999999 875 345667778999999999999873 456677788999999999864
Q ss_pred Cc----ccchhccCCCCccEEee--cCCC
Q 001281 654 LT----RLPSKMWNLINLRHLDI--EGAN 676 (1108)
Q Consensus 654 ~~----~lp~~i~~L~~L~~L~l--~~~~ 676 (1108)
-. .+...+...++|++|+| ++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 32 25566778889999999 7776
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0015 Score=72.72 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=97.2
Q ss_pred CCceeccchhHHHHHHHHhC----CC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLS----DD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.++.|-++.+++|.+.+.- ++ .+-..++-|.++|++|.|||+||+++++.... . .+.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~---~---~~~v~~s~l~s 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA---N---FIFSPASGIVD 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---E---EEEEEGGGTCC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---C---EEEEehhhhcc
Confidence 35688999888887766532 10 01233578899999999999999999986432 2 22333332111
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCC-----------Chh---hHHHHHhhhcc--CC
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNE-----------NYS---LWEDLKAPFLA--AA 318 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~ 318 (1108)
. .-......+...+...-...+++|++|++..- +.. ....+...+.. ..
T Consensus 254 --------------k-~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 --------------K-YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp --------------S-SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred --------------c-cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0 00011111112222222457899999998431 000 12223333322 23
Q ss_pred CCcEEEEecCchhhhhh-c-c---ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 319 PNSKIIVTTRHSHVAST-M-G---SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 319 ~gs~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
.+..||.||........ + . -...+.++..+.++-.++|..+........+. ....+++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~------dl~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF------DFEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC------CHHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc------CHHHHHHhCCCCC
Confidence 45677778765443322 1 1 22468888878888788887665432221111 1346777777753
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.33 E-value=0.00065 Score=73.82 Aligned_cols=135 Identities=15% Similarity=0.195 Sum_probs=73.6
Q ss_pred ceeccchhHHHHHHHHhCC----CCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHH
Q 001281 185 AVYGRDDDKAKILDMVLSD----DPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
.++|.+..++.+...+... ..+......+.++|++|+|||++|+.++...... -...+.+.++....... ..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~~~~~~~-~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHA-VS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGGCCSTTH-HH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeeccccccccc-HH
Confidence 4778888888877776542 1112234689999999999999999998854221 12234555544332211 11
Q ss_pred HHHHHhcCCCC--CcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEEec
Q 001281 261 ALLESITCKPC--DLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIVTT 327 (1108)
Q Consensus 261 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 327 (1108)
.+ ++.... .......+...+. .....+|+||++..-.......+...+.... ..+.||.||
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred Hh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 11 222111 0000011222221 1335799999997666666666666554321 234477777
Q ss_pred Cc
Q 001281 328 RH 329 (1108)
Q Consensus 328 R~ 329 (1108)
..
T Consensus 168 n~ 169 (311)
T 4fcw_A 168 NL 169 (311)
T ss_dssp ST
T ss_pred cc
Confidence 65
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.32 E-value=0.00052 Score=78.81 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=78.9
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc--c-cce-eEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI--K-FDI-KAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~-f~~-~~wv~~~~~~~~~~~~ 259 (1108)
..++||+.++..+...+.... ..-+.++|++|+|||++|+.++........ . .+. .+.++++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~-----~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~-------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT-----KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-----SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCccCcHHHHHHHHHHHhccC-----CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc--------
Confidence 469999999999999996533 234579999999999999998875311000 0 011 11222220
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhh-----
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAS----- 334 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~----- 334 (1108)
...+. -......+ +...-..++.+|++|. ..+....+...+. ....++|.+|.......
T Consensus 247 ----~~~g~---~e~~~~~~---~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 247 ----KYRGE---FEDRLKKV---MDEIRQAGNIILFIDA----AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ----cccch---HHHHHHHH---HHHHHhcCCeEEEEeC----chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcC
Confidence 00000 00112222 2222235678999991 1122223333332 22356666665443111
Q ss_pred -h-ccccceeeCCCCChhhHHHHHHhhhc
Q 001281 335 -T-MGSVEHYNLSLLSDDDCWFVFMNHAF 361 (1108)
Q Consensus 335 -~-~~~~~~~~l~~L~~~~~~~lf~~~~~ 361 (1108)
. ..-...+.++..+.++..+++...+.
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 1 11224689999999999999987653
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.28 E-value=0.0017 Score=70.45 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=37.2
Q ss_pred CceeccchhHHHHHHHHhCC--CC-------CCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 184 RAVYGRDDDKAKILDMVLSD--DP-------SDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++|+++.++.+...+... .. .......+.++|++|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999888777530 00 00113467899999999999999998754
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.28 E-value=0.0054 Score=64.27 Aligned_cols=183 Identities=14% Similarity=0.120 Sum_probs=91.9
Q ss_pred CCceeccchhHHHHHHHH---hCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMV---LSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L---~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.+..++++.+.+ ..... +....+-+.|+|++|+||||+|+.+++.... .| +.++.+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~---~~---~~i~~~~~~~- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---PF---FTISGSDFVE- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC---CE---EEECSCSSTT-
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---CE---EEEeHHHHHH-
Confidence 457899988877766543 22110 0111345889999999999999999875321 12 2332221110
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCC---C-------Ch----hhHHHHHhhhcc--CCC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWN---E-------NY----SLWEDLKAPFLA--AAP 319 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~-------~~----~~~~~l~~~l~~--~~~ 319 (1108)
... ..........+.......+.++++|++.. . .. .....+...+.. ...
T Consensus 84 -------------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 000 01112222333344455678999999821 0 00 112222222221 234
Q ss_pred CcEEEEecCchhhh-hhc-c---ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCC-chHHHH
Q 001281 320 NSKIIVTTRHSHVA-STM-G---SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRG-LPLAAK 392 (1108)
Q Consensus 320 gs~iivTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~ 392 (1108)
+..||.||...... ... . -...+.+...+.++-.+++........-.++ .....+++.+.| .+--+.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~------~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD------IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT------CCHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc------ccHHHHHHHcCCCCHHHHH
Confidence 45677777654321 111 1 1245777777777777777665532211111 113456677777 554443
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.28 E-value=0.0002 Score=67.73 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=50.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
...++|+|+.|+|||||++.++......+ + .++++....-... . +..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g--~-~~~~~~~~~~~~~-----------------------------~-~~~ 82 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAG--K-NAAYIDAASMPLT-----------------------------D-AAF 82 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTT--C-CEEEEETTTSCCC-----------------------------G-GGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcC--C-cEEEEcHHHhhHH-----------------------------H-HHh
Confidence 35899999999999999999988643211 1 2455554332211 1 113
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhhcc-CCCCc-EEEEecCc
Q 001281 290 KKFLLVLDDVWNENYSLWEDLKAPFLA-AAPNS-KIIVTTRH 329 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~iivTtR~ 329 (1108)
+.-+||+||+.......-+.+...+.. ...|. .||+||+.
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 456889999965433333333333322 12233 48888874
No 220
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.27 E-value=0.02 Score=63.96 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=95.5
Q ss_pred CCCCCCCccEEEEecCCcccccccCcccCCCCCCCCCCCCcEEEEccc-CCCcccccCCCCCccEEEEeccCCccccccc
Q 001281 943 TPIDCKLIESMTISNSSLQIYGCEGMIFNDPPAMDSKSLPTSVTISNV-LEFGKFLKQGFQQVETLRIGNSEQIKSWLQF 1021 (1108)
Q Consensus 943 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 1021 (1108)
.+..+..|+.+.+..+ ........+..+..|+.+.+... ..+.......+.+|+.+.+... +
T Consensus 212 ~f~~~~~l~~i~~~~~---------~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~--------i 274 (379)
T 4h09_A 212 GFSYGKNLKKITITSG---------VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK--------V 274 (379)
T ss_dssp TTTTCSSCSEEECCTT---------CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC--------C
T ss_pred ccccccccceeeeccc---------eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc--------c
Confidence 3445566666665422 11123345667888999888642 2233333566778999888543 3
Q ss_pred cCC-cccCCCCCCCcEeEeeccCccccccccc-cccCCCcceEecccccCCCCCcccCCCCCCCccEEeeecCcCccccc
Q 001281 1022 DKP-EQGLHVLSSPEDVSIEENCMSLVSFSEV-IFLMNNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCDNIHRKK 1099 (1108)
Q Consensus 1022 ~~~-p~~l~~l~~L~~L~l~~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~~L~~~~ 1099 (1108)
..+ ...|.++++|+.+.+. .+.++.++.. +.++++|+.+.|.. +++.++..+|.++++|+++.+.. .++.+.
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~--~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMD--NSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp SEECTTTTTTCTTCCEEEEC--CTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred eecccccccccccccccccc--ccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEc
Confidence 333 3568899999999997 6678889874 44789999999954 68889888899999999998853 466666
Q ss_pred cccc
Q 001281 1100 QATF 1103 (1108)
Q Consensus 1100 ~~~~ 1103 (1108)
..+|
T Consensus 349 ~~aF 352 (379)
T 4h09_A 349 SGAF 352 (379)
T ss_dssp TTTT
T ss_pred hhHh
Confidence 6555
No 221
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0011 Score=73.97 Aligned_cols=177 Identities=12% Similarity=0.092 Sum_probs=94.3
Q ss_pred CCceeccchhHHHHHHHHh----CCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVL----SDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~----~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.++.|-++.+++|.+.+. .++ .+-..++-|-++|++|.|||.+|+++++.... . .+.++.+.-.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~---~---f~~v~~s~l~- 252 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA---T---FLKLAAPQLV- 252 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---E---EEEEEGGGGC-
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC---C---EEEEehhhhh-
Confidence 4578999999888876532 211 01233578899999999999999999986432 2 2233332211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCC------CCh----hh----HHHHHhhhcc--C
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQK-ALDGKKFLLVLDDVWN------ENY----SL----WEDLKAPFLA--A 317 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~------~~~----~~----~~~l~~~l~~--~ 317 (1108)
....+ ..+...+.+.. .-...+++|++|++.. ... .. ...+...+.. .
T Consensus 253 -------------~~~vG--ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 253 -------------QMYIG--EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -------------SSCSS--HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -------------hcccc--hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 00000 11111222222 2234689999999821 000 01 1122222322 2
Q ss_pred CCCcEEEEecCchhhhhh-c----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc
Q 001281 318 APNSKIIVTTRHSHVAST-M----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL 387 (1108)
Q Consensus 318 ~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 387 (1108)
..+..||.||...+.... + .-...+.++..+.++-.++|..+........+. ...+|++.+.|.
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv------dl~~lA~~t~G~ 386 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI------NWQELARSTDEF 386 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC------CHHHHHHHCSSC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC------CHHHHHHhCCCC
Confidence 234566667765443322 1 123568888888888888887665322211111 134677777774
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0028 Score=70.29 Aligned_cols=177 Identities=18% Similarity=0.119 Sum_probs=95.0
Q ss_pred CceeccchhHHHHHHHHh----CCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 184 RAVYGRDDDKAKILDMVL----SDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~----~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
.++.|-++.+++|.+.+. .++ -+-...+-|.++|++|.|||.||+++++.... . .+.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---~---fi~vs~s~L~s- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA---T---FIRVIGSELVQ- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---E---EEEEEGGGGCC-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC---C---eEEEEhHHhhc-
Confidence 468899988888876532 110 01233677889999999999999999986432 2 22333322110
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC--------hh------hHHHHHhhhcc--CCC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN--------YS------LWEDLKAPFLA--AAP 319 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~------~~~~l~~~l~~--~~~ 319 (1108)
... ......+...+...-...+++|++|++..-. .. ....+...+.. ...
T Consensus 282 -------------k~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------KYV-GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------CSS-SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------ccC-CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 000 0111111222222234578999999984310 00 11122222222 223
Q ss_pred CcEEEEecCchhhhhh-c----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc
Q 001281 320 NSKIIVTTRHSHVAST-M----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL 387 (1108)
Q Consensus 320 gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 387 (1108)
+..||.||........ + .-...+.++..+.++-.++|..+........+. ....|++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv------dl~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI------RWELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC------CHHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC------CHHHHHHHCCCC
Confidence 4456667754432221 1 223578888888888888887766433221111 135677888775
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.25 E-value=0.00077 Score=83.89 Aligned_cols=156 Identities=12% Similarity=0.175 Sum_probs=79.9
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc--cc-c-eeEEEEeCCCCCHHHH
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI--KF-D-IKAWVCVSDEFDVLSI 258 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~f-~-~~~wv~~~~~~~~~~~ 258 (1108)
-..++||++++.++.+.+.... ..-+.++|++|+||||+|+.+++....... .. + .+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~-----~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS-----CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred CcccCCcHHHHHHHHHHHhcCC-----CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 3468999999999999986543 234689999999999999999875311000 00 1 223333221100
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHH-HHHHhC-CceEEEEEeCCCCCC--------hhhHHHHHhhhccCCCCcEEEEecC
Q 001281 259 SMALLESITCKPCDLKALNEVQVQ-LQKALD-GKKFLLVLDDVWNEN--------YSLWEDLKAPFLAAAPNSKIIVTTR 328 (1108)
Q Consensus 259 ~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtR 328 (1108)
.... ..+....... +...-. +++.+|++|++..-. .+....+...+. . .+..+|.+|.
T Consensus 240 ---------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~-~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-R-GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-T-TCCCEEEEEC
T ss_pred ---------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-C-CCeEEEEecC
Confidence 0000 0111222222 222222 468999999995421 111112222222 2 2345665555
Q ss_pred chhh-----hhhc-cccceeeCCCCChhhHHHHHHhh
Q 001281 329 HSHV-----ASTM-GSVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 329 ~~~v-----~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
.... ...+ .-...+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 3322 1111 11245889999999998888644
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0024 Score=71.10 Aligned_cols=53 Identities=30% Similarity=0.254 Sum_probs=39.0
Q ss_pred CCceeccchhHHHHHHHHhC----CC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 183 ERAVYGRDDDKAKILDMVLS----DD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
-.++.|-++.+++|.+.+.- ++ .+-...+-|.++|++|.|||++|+++++...
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999988888776531 10 0123356789999999999999999998643
No 225
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.16 E-value=0.0014 Score=75.09 Aligned_cols=93 Identities=11% Similarity=0.005 Sum_probs=58.8
Q ss_pred EEEEEeCCCCCChhhHHHHHhhhccCCCCcEEE-Ee---------cC----ch----hhhhhccccceeeCCCCChhhHH
Q 001281 292 FLLVLDDVWNENYSLWEDLKAPFLAAAPNSKII-VT---------TR----HS----HVASTMGSVEHYNLSLLSDDDCW 353 (1108)
Q Consensus 292 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vT---------tR----~~----~v~~~~~~~~~~~l~~L~~~~~~ 353 (1108)
-++++|++..-+.+.++.+...+...... .+| .| |. .. .+...+ ..+.+.+++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 38999999776667777887777654444 344 34 32 10 122222 45799999999999
Q ss_pred HHHHhhhcCCCCccchhhhhhHHHHHHHHhc-CCchHHHHH
Q 001281 354 FVFMNHAFYTRDHIHVQRISGLFHKKVVQKC-RGLPLAAKT 393 (1108)
Q Consensus 354 ~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPLai~~ 393 (1108)
+.+..++..... .+.++....|++.+ +|.|-....
T Consensus 373 ~iL~~~~~~~~~-----~~~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 373 QIIKIRAQTEGI-----NISEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHHHHHTC-----CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC-----CCCHHHHHHHHHHccCCCHHHHHH
Confidence 999877632111 11225667888888 787765443
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.15 E-value=0.0033 Score=71.29 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=95.1
Q ss_pred CCceeccchhHHHHHHHHh---CCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMVL---SDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~---~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.++.++++.+... ... .+..-.+-|.|+|++|+|||+||+.++..... .| +.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~---~f---~~is~~~~~~~ 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV---PF---FHISGSDFVEL 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC---CE---EEEEGGGTTTC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC---Ce---eeCCHHHHHHH
Confidence 3568999887776665532 210 01111234789999999999999999985422 22 23333322110
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCCh--------------hhHHHHHhhhcc--CCC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENY--------------SLWEDLKAPFLA--AAP 319 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 319 (1108)
. . ..........+.......+.+|++|++..-.. .....+...+.. ...
T Consensus 89 ----------~----~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ----------F----V-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ----------C----T-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ----------H----h-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 0 00111222333444456789999999833110 112233333321 124
Q ss_pred CcEEEEecCchhhhhh--cc---ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 320 NSKIIVTTRHSHVAST--MG---SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 320 gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
+..||.||...+.... .. -...+.+...+.++-.+++..++....-..+ .....+++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~------v~l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED------VNLEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT------CCHHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch------hhHHHHHHhcCCCc
Confidence 5667777766543321 11 1236788888877777777766543221111 11345788888876
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.12 E-value=0.0012 Score=69.81 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=67.5
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
..++|....+.++.+.+..-... ..-|.|+|.+|+|||++|+.+++.....+ ...+.++++... ...+...+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~---~~~vll~G~~GtGKt~la~~i~~~~~~~~---~~~~~v~~~~~~--~~~~~~~l 77 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPL---DKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAALN--ENLLDSEL 77 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTS---CSCEEEECCTTSCHHHHHHHHHHTSTTTT---SCEEEEEGGGSC--HHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCC---CCCEEEECCCCCcHHHHHHHHHHhcCccC---CCeEEEecCCCC--hhHHHHHh
Confidence 35889999888887766432111 24577999999999999999998643211 123445555432 12221111
Q ss_pred HHhcCCCCCcccHHH-HHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccC-----------CCCcEEEEecCc
Q 001281 264 ESITCKPCDLKALNE-VQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAA-----------APNSKIIVTTRH 329 (1108)
Q Consensus 264 ~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 329 (1108)
++........... ....+.. ...-+|+||++..-.......+...+... ..+.+||.||..
T Consensus 78 --~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 78 --FGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp --HCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred --cCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 1111100000000 0000111 12458999999766555555565555432 235678888865
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0032 Score=69.08 Aligned_cols=177 Identities=16% Similarity=0.070 Sum_probs=94.3
Q ss_pred CCceeccchhHHHHHHHHhC----CC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLS----DD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.++.|.++.+++|.+.+.- ++ .+-...+-|-++|++|.|||.||+++++.... .| +.++.+.-.
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---~f---i~v~~s~l~- 253 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA---TF---LRIVGSELI- 253 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---EE---EEEESGGGC-
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC---CE---EEEEHHHhh-
Confidence 35688999888887765421 11 01233577899999999999999999986432 22 223322211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCC--------C--hh----hHHHHHhhhcc--C
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQK-ALDGKKFLLVLDDVWNE--------N--YS----LWEDLKAPFLA--A 317 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--------~--~~----~~~~l~~~l~~--~ 317 (1108)
... ..+.+...+.+.. .-...+++|++|++..- . .. ....+...+.. .
T Consensus 254 -------------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 -------------QKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp -------------CSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred -------------hcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 000 0111122222222 22356899999998421 0 00 11222222222 2
Q ss_pred CCCcEEEEecCchhhhhh-c----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCc
Q 001281 318 APNSKIIVTTRHSHVAST-M----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGL 387 (1108)
Q Consensus 318 ~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 387 (1108)
..+..||.||...+..+. + .-+..+.++..+.++-.++|..+.....-..+. ....+++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv------dl~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV------NLETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC------CHHHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC------CHHHHHHhCCCC
Confidence 344566667765443322 1 122457788778888788887766432211111 134677777765
No 229
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.02 E-value=0.0046 Score=76.16 Aligned_cols=157 Identities=14% Similarity=0.193 Sum_probs=85.9
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc---ccccccceeEEE-EeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKA---VSDIKFDIKAWV-CVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv-~~~~~~~~~~~~ 259 (1108)
..++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.++.... +.....+..+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~-----~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR-----KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-----SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCccCCHHHHHHHHHHHhccC-----CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------
Confidence 468999999999999986543 34567999999999999999887531 111012222321 11110
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCC--------ChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKAL-DGKKFLLVLDDVWNE--------NYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
+... ......++....+.+.+ ..++.+|++|++..- ...+...+...+.. ..+..+|.+|...
T Consensus 254 ------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 ------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQ 325 (758)
T ss_dssp -------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHH
T ss_pred ------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCch
Confidence 0000 01112232233333333 346799999999542 11111122222222 2345677766644
Q ss_pred hhhhhc-------cccceeeCCCCChhhHHHHHHhhh
Q 001281 331 HVASTM-------GSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 331 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
...... .-...+.+...+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 322111 111368899999999888886544
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.02 E-value=0.0061 Score=73.33 Aligned_cols=179 Identities=14% Similarity=0.123 Sum_probs=98.4
Q ss_pred CCceeccchhHHHHHHHHh----CCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVL----SDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~----~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.++.|.++.+++|.+++. .++ -+-..++-|.++|++|.|||+||+++++.... +| +.|+.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~---~~---~~v~~~~--- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FF---FLINGPE--- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC---EE---EEEEHHH---
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---eE---EEEEhHH---
Confidence 3568899988888877642 221 12234678899999999999999999987533 22 3333221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC-------hhh----HHHHHhhhcc--CCCCc
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN-------YSL----WEDLKAPFLA--AAPNS 321 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~----~~~l~~~l~~--~~~gs 321 (1108)
+. .. ........+...+.......+++|++|++..-. .+. ...+...+.. ...+.
T Consensus 274 -------l~----sk-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -------IM----SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -------HH----SS-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -------hh----cc-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11 01 111112223333444446779999999983210 011 1222222222 12344
Q ss_pred EEEEecCchhhh-hhcc----ccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 322 KIIVTTRHSHVA-STMG----SVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 322 ~iivTtR~~~v~-~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
.||.||...+.. ..+. -...+.+...+.++-.++|..+........+ ....+|++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d------vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD------VDLEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT------CCHHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc------cCHHHHHHhcCCCC
Confidence 566666543322 2221 1256888888888888888766533221111 12457888887764
No 231
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.00 E-value=0.00099 Score=71.62 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=70.3
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
..++|+...+.++.+.+..-... ..-|.|+|.+|+|||++|+.+++.....+ ...+.++++.... .++...+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~---~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~---~~~v~v~~~~~~~--~l~~~~l 73 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS---DATVLIHGDSGTGKELVARALHACSARSD---RPLVTLNCAALNE--SLLESEL 73 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST---TSCEEEESCTTSCHHHHHHHHHHHSSCSS---SCCCEEECSSCCH--HHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCC---CCcEEEECCCCchHHHHHHHHHHhCcccC---CCeEEEeCCCCCh--HHHHHHh
Confidence 35889999988888877542211 23567999999999999999987532111 1123345443321 2221111
Q ss_pred HHhcCCCCCcccH-HHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccC-----------CCCcEEEEecCc
Q 001281 264 ESITCKPCDLKAL-NEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAA-----------APNSKIIVTTRH 329 (1108)
Q Consensus 264 ~~l~~~~~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 329 (1108)
++......... ......+... ..-.|+||++..-.......+...+... ....+||.||..
T Consensus 74 --fg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 74 --FGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp --TCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred --cCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 12111000000 0000011111 1246899999776655556666555432 134678887765
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.99 E-value=0.0015 Score=80.42 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=79.9
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccc---cccccceeEEEEeCCCCCHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAV---SDIKFDIKAWVCVSDEFDVLSISM 260 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~ 260 (1108)
..++||+++++++...+.... ..-+.++|++|+|||++|+.+++.... .....+.. ++.++-.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~-----~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~g-------- 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT-----KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDMG-------- 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-----SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC-----CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEeccc--------
Confidence 469999999999999997543 234679999999999999998875311 00001111 1111110
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhhhh-----
Q 001281 261 ALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVAST----- 335 (1108)
Q Consensus 261 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~----- 335 (1108)
....+ .-...... .+......++.+|++|.. .+....+...+. ....++|.||........
T Consensus 246 --~~~~G---~~e~~l~~---~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 246 --TKYRG---EFEDRLKK---VMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred --ccccc---hHHHHHHH---HHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 00000 00111222 223333467889999921 122222333332 234567766665442111
Q ss_pred -c-cccceeeCCCCChhhHHHHHHhhh
Q 001281 336 -M-GSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 336 -~-~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
+ .-...+.++..+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 112468999999999999998654
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.92 E-value=0.00026 Score=75.08 Aligned_cols=52 Identities=23% Similarity=0.398 Sum_probs=35.8
Q ss_pred CCceeccchhHHHHHHHHhC---CCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 183 ERAVYGRDDDKAKILDMVLS---DDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~---~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-.+++|.+..++.+.+.+.. ++. +....+-+.|+|++|+|||++|+.+++..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35689999888887776531 000 00112337799999999999999998864
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.90 E-value=0.00073 Score=83.15 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=86.1
Q ss_pred CceeccchhHHHHHHHHhCCCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDP----SDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.+..++.+...+..... +......+.++|++|+|||++|+.+++..... -...+.++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~~-- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKHS-- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhcccccc--
Confidence 4689999998888877764321 12233478999999999999999998754211 12234455443221100
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccC-----------CCCcEEEEecC
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAA-----------APNSKIIVTTR 328 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR 328 (1108)
. ....+...+++ ....+|+||++..........+...+..+ .....||+||.
T Consensus 566 ------------~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 566 ------------T--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ------------C--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ------------c--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0 00111111211 23448999999776666666666666542 23568888887
Q ss_pred ch-----h----hhhhcc------ccceeeCCCCChhhHHHHHHhh
Q 001281 329 HS-----H----VASTMG------SVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 329 ~~-----~----v~~~~~------~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
.. . +...+. -...+.+.++++++-.+++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 31 1 111111 1136777888877766665443
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.80 E-value=0.0068 Score=61.71 Aligned_cols=85 Identities=24% Similarity=0.168 Sum_probs=52.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcC-----------CC-CCcccHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITC-----------KP-CDLKALN 277 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~ 277 (1108)
-.++.|+|.+|+||||||..+.. . .-..++|++....++...+.. +.+..+. .. ....+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 36899999999999999999987 1 234678888776555544432 3332221 11 1111223
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCC
Q 001281 278 EVQVQLQKALDGKKFLLVLDDVWN 301 (1108)
Q Consensus 278 ~~~~~l~~~l~~kr~LlVlDdv~~ 301 (1108)
.....++..+..+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344445555544578999999843
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.62 E-value=0.0034 Score=77.35 Aligned_cols=134 Identities=14% Similarity=0.163 Sum_probs=72.7
Q ss_pred CceeccchhHHHHHHHHhCCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.+..++.+...+.... .+......+.++|++|+|||++|+.+.+... ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~------~~~~~i~~s~~~~~~~-- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHT-- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT------CEEEEEEGGGCSSSSC--
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc------CCEEEEechhhcchhh--
Confidence 458899988888777665321 1122345789999999999999999987531 1233444443321100
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEEec
Q 001281 260 MALLESITCKPCDLKALNEVQVQLQKAL-DGKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIVTT 327 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 327 (1108)
+...++.+ ......++ ...+.+.+ .....+|+||++.....+....+...+..+. ....||.||
T Consensus 530 --~~~l~g~~-~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 530 --VSRLIGAP-PGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp --CSSSCCCC-SCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred --HhhhcCCC-CCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 00011111 11111111 11122222 2346799999997666666666666654321 234577777
Q ss_pred Cc
Q 001281 328 RH 329 (1108)
Q Consensus 328 R~ 329 (1108)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 53
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.53 E-value=0.021 Score=62.26 Aligned_cols=152 Identities=12% Similarity=0.094 Sum_probs=83.8
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
..++|+++.+..+...+... .-+.++|++|+|||++|+.+.+.... .| ..+.+.......++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~-------~~vll~G~pGtGKT~la~~la~~~~~---~~---~~i~~~~~~~~~~l~g~~- 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG-------GHILLEGVPGLAKTLSVNTLAKTMDL---DF---HRIQFTPDLLPSDLIGTM- 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-------CCEEEESCCCHHHHHHHHHHHHHTTC---CE---EEEECCTTCCHHHHHEEE-
T ss_pred cceeCcHHHHHHHHHHHHcC-------CeEEEECCCCCcHHHHHHHHHHHhCC---Ce---EEEecCCCCChhhcCCce-
Confidence 35889999999888887653 25789999999999999999875321 22 223333222222221100
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhCC--ceEEEEEeCCCCCChhhHHHHHhhhccC-----------CCCcEEEEecCch
Q 001281 264 ESITCKPCDLKALNEVQVQLQKALDG--KKFLLVLDDVWNENYSLWEDLKAPFLAA-----------APNSKIIVTTRHS 330 (1108)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~ 330 (1108)
.......... .-.+ ...++++|++..-.......+...+... .....||.|+...
T Consensus 93 --~~~~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 93 --IYNQHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EEETTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --eecCCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 0000000000 0000 1258999999766555555555544321 2345566565522
Q ss_pred h------hhhhc-cccc-eeeCCCCChhhHHHHHHhhhc
Q 001281 331 H------VASTM-GSVE-HYNLSLLSDDDCWFVFMNHAF 361 (1108)
Q Consensus 331 ~------v~~~~-~~~~-~~~l~~L~~~~~~~lf~~~~~ 361 (1108)
. +...+ .-.. .+.+...+.++-.+++...+.
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 11111 1112 478888888888888877664
No 238
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.52 E-value=0.022 Score=65.06 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=36.2
Q ss_pred ceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 185 AVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.++|+++.++.+...+..+ .-|.++|++|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~-------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT-------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC-------CeeEeecCchHHHHHHHHHHHHHH
Confidence 4789999998888877654 357899999999999999999864
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.0019 Score=68.12 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=43.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEe--CCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCV--SDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
+++.|+|++|+|||+||.++... . ...+.|+++ .+..+. . ..+.++....+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~---G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---L---GGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---H---HTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---C---CCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 57789999999999999999875 1 113456666 322110 0 0334555555566665
Q ss_pred CceEEEEEeCCC
Q 001281 289 GKKFLLVLDDVW 300 (1108)
Q Consensus 289 ~kr~LlVlDdv~ 300 (1108)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 555 99999994
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.30 E-value=0.015 Score=67.93 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=76.2
Q ss_pred CceeccchhHHHHHHHHhCCC-CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDD-PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMAL 262 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 262 (1108)
.+++|.++-...+.+.+.-.. .......++.++|++|+||||||+.++..... .| .-+.++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR---KF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC---EE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC---Ce---EEEEecccchhhhhhhHH
Confidence 457888777766654432110 00113468999999999999999999875421 22 122233222211111111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCChh----hHHHHHhhhccCC---------------CCcEE
Q 001281 263 LESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNENYS----LWEDLKAPFLAAA---------------PNSKI 323 (1108)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~i 323 (1108)
...++.. .......+... ....-++++|++..-... ....+...+.... ....|
T Consensus 155 ~~~ig~~------~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 155 RTYVGAM------PGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHHhccC------chHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 1111110 01111122222 223348889998553322 1223333332111 33466
Q ss_pred EEecCchh-----hhhhccccceeeCCCCChhhHHHHHHhhh
Q 001281 324 IVTTRHSH-----VASTMGSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 324 ivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
|.||.... +...+ ..+.+.+++.++-.+++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 66666432 22222 468899999988887776654
No 241
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.12 E-value=0.0027 Score=68.23 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 191 DDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
..++.+.+++..... .....+.|+|+.|+|||+||+.+++...
T Consensus 135 ~~~~~~~~~i~~~~~--~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS--AEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHCSC--SSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc--cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344445555543211 1135788999999999999999998643
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.10 E-value=0.082 Score=55.48 Aligned_cols=155 Identities=13% Similarity=0.075 Sum_probs=78.8
Q ss_pred CceeccchhHHHHHHHHhCCC--------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 184 RAVYGRDDDKAKILDMVLSDD--------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
.++.|.++.++++.+.+..+- .+-.-.+-+.++|++|+||||||+.++..... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~------~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL------NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC------EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC------CEEEEEcHHHHhh
Confidence 467888888887766542100 00001122899999999999999999875422 2333432221110
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCCCh-----------hhHHHHHhhhccC--CCCc
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKA-LDGKKFLLVLDDVWNENY-----------SLWEDLKAPFLAA--APNS 321 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs 321 (1108)
...........+.+. -...++++++|++..-.. .....+...+..+ ....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 000011111112221 134578999999843100 1112222223222 2234
Q ss_pred EEEEecCchhhhhhc-----cccceeeCCCCChhhHHHHHHhhh
Q 001281 322 KIIVTTRHSHVASTM-----GSVEHYNLSLLSDDDCWFVFMNHA 360 (1108)
Q Consensus 322 ~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 360 (1108)
-++.+|....+.... .-...+.++..+.++-.++|....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 455666665544321 123567788888888888887655
No 243
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.05 E-value=0.021 Score=60.91 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.++.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999865
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.04 E-value=0.027 Score=69.06 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=84.3
Q ss_pred CCceeccchhHHHHHHHHhC----CC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC
Q 001281 183 ERAVYGRDDDKAKILDMVLS----DD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD 254 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 254 (1108)
-.+++|.+..++++.+++.. +. -+-.....|.|+|++|+||||||+.+...... .| +.++.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~---i~v~~~~--- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FF---FLINGPE--- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EE---EEEEHHH---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cE---EEEEchH---
Confidence 45789999999988887642 00 01122457899999999999999999876421 22 3333211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCCC-------hh----hHHHHHhhhccC--CCCc
Q 001281 255 VLSISMALLESITCKPCDLKALNEVQVQLQKALDGKKFLLVLDDVWNEN-------YS----LWEDLKAPFLAA--APNS 321 (1108)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~l~~~l~~~--~~gs 321 (1108)
+..... ......+...+.......+.++++|++..-. .+ ....+...+... ..+.
T Consensus 274 -----------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 -----------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred -----------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 111000 0111122222333334567899999983210 01 112222222221 2345
Q ss_pred EEEEecCchhhh-hhcc----ccceeeCCCCChhhHHHHHHhhhc
Q 001281 322 KIIVTTRHSHVA-STMG----SVEHYNLSLLSDDDCWFVFMNHAF 361 (1108)
Q Consensus 322 ~iivTtR~~~v~-~~~~----~~~~~~l~~L~~~~~~~lf~~~~~ 361 (1108)
.||.||...... ..+. -...+.+...+.++-.+++...+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 666666553222 1111 114567788888888888876653
No 245
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.02 E-value=0.01 Score=73.74 Aligned_cols=135 Identities=13% Similarity=0.223 Sum_probs=72.5
Q ss_pred CceeccchhHHHHHHHHhCCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHH
Q 001281 184 RAVYGRDDDKAKILDMVLSDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSIS 259 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 259 (1108)
..++|.+..+..+...+.... .+......+.|+|+.|+|||++|+.+.+.....+ ...+.++++.......
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~~~~~~~-- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHA-- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSSGG--
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhccchhH--
Confidence 357999998888877775321 1122346889999999999999999987542111 1233444443322100
Q ss_pred HHHHHHhcCCCCCc---ccHHHHHHHHHHHhCCceEEEEEeCCCCCChhhHHHHHhhhccCC-----------CCcEEEE
Q 001281 260 MALLESITCKPCDL---KALNEVQVQLQKALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAA-----------PNSKIIV 325 (1108)
Q Consensus 260 ~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiv 325 (1108)
...+.+...+. .....+...++. ....+|+||++..-..+....+...+..+. .+..||+
T Consensus 633 ---~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ 706 (854)
T 1qvr_A 633 ---VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL 706 (854)
T ss_dssp ---GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred ---HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEE
Confidence 00110000000 000112222222 234699999997666666666666665331 2445777
Q ss_pred ecCc
Q 001281 326 TTRH 329 (1108)
Q Consensus 326 TtR~ 329 (1108)
||..
T Consensus 707 tsn~ 710 (854)
T 1qvr_A 707 TSNL 710 (854)
T ss_dssp ECCT
T ss_pred ecCc
Confidence 7764
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.93 E-value=0.068 Score=60.98 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=90.6
Q ss_pred CCceeccchhHHHHHHHH---hCCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH
Q 001281 183 ERAVYGRDDDKAKILDMV---LSDD----PSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV 255 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L---~~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 255 (1108)
-.+++|.++.+.++.+.. .... .+..-.+-|.|+|++|+||||||+.++..... . .+.++.+.-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~---~i~i~g~~~~~- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---P---FITASGSDFVE- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---C---EEEEEGGGGTS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C---EEEEehhHHHH-
Confidence 457899987776665543 2211 01111233899999999999999999975431 1 23333322110
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC----CceEEEEEeCCCCCC----------hhhH----HHHHhhhccC
Q 001281 256 LSISMALLESITCKPCDLKALNEVQVQLQKALD----GKKFLLVLDDVWNEN----------YSLW----EDLKAPFLAA 317 (1108)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~ 317 (1108)
.. .......++..++ ..+.++++|++..-. ...+ ..+...+..+
T Consensus 103 -------------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 -------------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 00 0011122233332 245899999983210 1122 2232223222
Q ss_pred --CCCcEEEEecCchhhhhh-c----cccceeeCCCCChhhHHHHHHhhhcCCCCccchhhhhhHHHHHHHHhcCCch
Q 001281 318 --APNSKIIVTTRHSHVAST-M----GSVEHYNLSLLSDDDCWFVFMNHAFYTRDHIHVQRISGLFHKKVVQKCRGLP 388 (1108)
Q Consensus 318 --~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 388 (1108)
..+..|+.||....+... + .-...+.++..+.++-.+++..++....-..+ .....|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d------v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED------VDLALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS------STTHHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH------HHHHHHHHhcCCCC
Confidence 234456666666554321 1 12246788888888888888766532211111 12346777777765
No 247
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.87 E-value=0.046 Score=56.94 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=33.3
Q ss_pred CCceeccchhHHHHHHHHhCCCC-------CCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDP-------SDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-.+++|.++.+.++......-.. +-.-.+-+.|+|++|+||||||+.++...
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34688888766665543321000 00001228999999999999999999754
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.82 E-value=0.021 Score=59.01 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC---------CcccHH-
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSISMALLESITCKPC---------DLKALN- 277 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~- 277 (1108)
.++.|+|++|+||||||..+........ ..-..++|++....++...+. .+++.++.... ...+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 6999999999999999999886421110 012467888877655544332 33444433210 011122
Q ss_pred --HHHHHHHHHhC-CceEEEEEeCCC
Q 001281 278 --EVQVQLQKALD-GKKFLLVLDDVW 300 (1108)
Q Consensus 278 --~~~~~l~~~l~-~kr~LlVlDdv~ 300 (1108)
.....+.+.+. .+.-+||+|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22233444443 467899999984
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.77 E-value=0.05 Score=57.49 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=34.0
Q ss_pred CCceeccchhHHHHHHHHhCCCC-------CCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDP-------SDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-.+++|.++.+.++.+....-.. +-.-.+-+.|+|++|+||||||+.++...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 45788988776666544321000 00001228899999999999999999764
No 250
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.66 E-value=0.0068 Score=61.03 Aligned_cols=113 Identities=10% Similarity=-0.061 Sum_probs=62.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC--DLKALNEVQVQLQKAL 287 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 287 (1108)
-.++.|+|..|.||||++..+..+....+ . .++.+...... . ....++..++.... ......++...+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g--~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD--V-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--C-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC--C-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 37899999999999999988877653322 1 23333322211 1 11233344443221 1122344555555555
Q ss_pred CCc-eEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh
Q 001281 288 DGK-KFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH 331 (1108)
Q Consensus 288 ~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 331 (1108)
.+. .-+||+|.+..-+.+..+.+. .+.+ .|..||+|-++.+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 444 449999999543334444433 2333 3788999998543
No 251
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.63 E-value=0.045 Score=53.12 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999998876543
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.54 E-value=0.019 Score=62.30 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=53.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQLQ 284 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (1108)
-.++.|+|++|+||||||.+++...... -..++|++....++.. .++.++.... ...+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4799999999999999999988754321 2346788877766654 3445544321 1233445444444
Q ss_pred HHhC-CceEEEEEeCCC
Q 001281 285 KALD-GKKFLLVLDDVW 300 (1108)
Q Consensus 285 ~~l~-~kr~LlVlDdv~ 300 (1108)
..++ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 4442 455689999873
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.51 E-value=0.059 Score=59.91 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+.++|++|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998754
No 254
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.41 E-value=0.025 Score=58.07 Aligned_cols=114 Identities=18% Similarity=0.074 Sum_probs=61.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-------------------
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC------------------- 271 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 271 (1108)
.++.|+|++|+|||||++.++..... .-..++|+.... ....+...+ ..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 58999999999999999998854322 112456665443 333333332 23322110
Q ss_pred ----CcccHHHHHHHHHHHh---CCceEEEEEeCCCC---CChhhHHHHHhhhcc--CCCCcEEEEecCch
Q 001281 272 ----DLKALNEVQVQLQKAL---DGKKFLLVLDDVWN---ENYSLWEDLKAPFLA--AAPNSKIIVTTRHS 330 (1108)
Q Consensus 272 ----~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~---~~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 330 (1108)
...+..+....+.+.+ .-++.+||+|.... .+......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113444444444443 22344999999742 122333444444332 23577888888764
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.31 E-value=0.036 Score=58.17 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=53.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----cccHHHH-HHHHH
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCD-----LKALNEV-QVQLQ 284 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~ 284 (1108)
.++-|.|++|+||||||.+++....... .-..++||+..+.++.. .++.++....+ ..+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 3789999999999999988876543210 12467899988877753 25666654321 2234444 32222
Q ss_pred HH--h-CCceEEEEEeCCC
Q 001281 285 KA--L-DGKKFLLVLDDVW 300 (1108)
Q Consensus 285 ~~--l-~~kr~LlVlDdv~ 300 (1108)
.. + +++.-+||+|-+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 4578899999983
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.26 E-value=0.018 Score=56.08 Aligned_cols=113 Identities=19% Similarity=0.103 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC---CCHHHHHHHHHHHhcC------C--CCCcc-----
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE---FDVLSISMALLESITC------K--PCDLK----- 274 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~------~--~~~~~----- 274 (1108)
..|.|++..|.||||.|-...-+..- +--.+.++.+-.. .....++ +.++. . .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence 45666777779999999665543221 1112344443322 2222333 33310 0 01111
Q ss_pred --cHHHHHHHHHHHhCCce-EEEEEeCCCC---CChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 275 --ALNEVQVQLQKALDGKK-FLLVLDDVWN---ENYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 275 --~~~~~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
.........++.+.+.+ =|||||++-. -.....+++...+........||+|+|..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11223344555665544 4999999811 11234456667776667788999999984
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.26 E-value=0.069 Score=51.80 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 001281 211 RVIPIVGMAGIGKTTLAREV 230 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v 230 (1108)
.+|+|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 258
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.18 E-value=0.15 Score=55.66 Aligned_cols=156 Identities=12% Similarity=-0.040 Sum_probs=96.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQK-ALD 288 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 288 (1108)
.++..++|..|.||++.|+.+....... .|+....+.+....++. ++...+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQ--GFEEHHTFSIDPNTDWN---------------------AIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHH--TCCEEEEEECCTTCCHH---------------------HHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhC--CCCeeEEEEecCCCCHH---------------------HHHHHhcCcCCc
Confidence 4689999999999999998887643211 23221122233222332 22222211 234
Q ss_pred CceEEEEEeCCCC-CChhhHHHHHhhhccCCCCcEEEEecCc-------hhhhhhcc-ccceeeCCCCChhhHHHHHHhh
Q 001281 289 GKKFLLVLDDVWN-ENYSLWEDLKAPFLAAAPNSKIIVTTRH-------SHVASTMG-SVEHYNLSLLSDDDCWFVFMNH 359 (1108)
Q Consensus 289 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 359 (1108)
+++-++|+|++.. -+...++.+...+....+++.+|+++.. ..+...+. ....++..++++++....+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677888999865 4446777888777766667777776643 12333322 2356888999999988877776
Q ss_pred hcCCCCccchhhhhhHHHHHHHHhcCCchHHHHH
Q 001281 360 AFYTRDHIHVQRISGLFHKKVVQKCRGLPLAAKT 393 (1108)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 393 (1108)
+...+- .+..+.+..+++.++|...++..
T Consensus 155 ~~~~g~-----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL-----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTC-----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCC-----CCCHHHHHHHHHHhchHHHHHHH
Confidence 643221 12226778999999998877754
No 259
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.07 E-value=0.054 Score=58.64 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=39.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
-.++.|+|.+|+||||+|.+++....... ..-..++|++....++...+. ++++.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 36899999999999999998876532210 002468899988877766554 34455543
No 260
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.00 E-value=0.056 Score=58.54 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=39.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccc---------ccc----ceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSD---------IKF----DIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
-.++.|+|.+|+||||+|.+++....... ..- ..++|++....++...+.. +++.++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 47999999999999999998875421100 011 4688999888877666553 3455543
No 261
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.98 E-value=0.082 Score=57.62 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=39.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccc---cccceeEEEEeCCCCCHHHHHHHHHHHhc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSD---IKFDIKAWVCVSDEFDVLSISMALLESIT 267 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 267 (1108)
-.++.|+|.+|+||||+|..++....... ..-..++|++....++...+. .++..++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 47999999999999999998876532210 012468899988877766554 3344444
No 262
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.90 E-value=0.026 Score=51.53 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=39.1
Q ss_pred cEEEecCcccc--ccCcchhcCCCCcEEEeeCccccccchh-hhcCccCcEeeecCCc
Q 001281 598 RVLSLEGYYVT--QLPNSIKELKLLRYLNVAGTQIRSLPES-TSSLMHLRVLILRDCS 652 (1108)
Q Consensus 598 r~L~L~~~~i~--~lp~~i~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~ 652 (1108)
.+++.++++++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36778888887 7886543 3688888888888888654 5677778888877764
No 263
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.90 E-value=0.042 Score=60.06 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=53.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQLQ 284 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (1108)
-.++.|.|.+|+||||||.++...... .-..++|++....++.. .++.++.... +..+.++....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 358889999999999999888765432 12368899988776654 2344443211 1234555555555
Q ss_pred HHhC-CceEEEEEeCC
Q 001281 285 KALD-GKKFLLVLDDV 299 (1108)
Q Consensus 285 ~~l~-~kr~LlVlDdv 299 (1108)
...+ ...-+||+|.+
T Consensus 146 ~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHTTTCCSEEEEECT
T ss_pred HHHhcCCCCEEEEeCh
Confidence 5554 34568999988
No 264
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.83 E-value=0.029 Score=58.34 Aligned_cols=42 Identities=26% Similarity=0.246 Sum_probs=30.8
Q ss_pred hHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 192 DKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+++...+...........+|.|+|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344455555544444455789999999999999999999874
No 265
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.75 E-value=0.1 Score=56.85 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=51.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcccccccc----ceeEEEEeCCCCCHHHHHHHHHHHhcCCC------------CCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKF----DIKAWVCVSDEFDVLSISMALLESITCKP------------CDL 273 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 273 (1108)
-.++.|+|+.|+|||||+..++....... .. ..++|++....+....+ ..+++..+... ...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~-~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPP-EEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccch-hcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 47999999999999999999886542111 11 24588887665543332 33444332211 001
Q ss_pred ccHHHHHHHHHHHhC------CceEEEEEeCCC
Q 001281 274 KALNEVQVQLQKALD------GKKFLLVLDDVW 300 (1108)
Q Consensus 274 ~~~~~~~~~l~~~l~------~kr~LlVlDdv~ 300 (1108)
....+....+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112223333444443 467899999984
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.73 E-value=0.22 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.71 E-value=0.03 Score=55.90 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=33.3
Q ss_pred cchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 189 RDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
|++.++++.+.+.... .....+|+|+|..|+||||+++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~--~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK--TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSC--CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5566777887776532 233589999999999999999998764
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.69 E-value=0.048 Score=57.87 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=45.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD-EFDVLSISMALLESITCKPCDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 288 (1108)
..+++++|.+|+||||++..+........ . ..+..+.... .....+.+....+..+.+.....+..++...+.. +
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK-H-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTT-C-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-C-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 46999999999999999998876543211 1 1344454432 2223333333333333322111223344334443 3
Q ss_pred CceEEEEEeCC
Q 001281 289 GKKFLLVLDDV 299 (1108)
Q Consensus 289 ~kr~LlVlDdv 299 (1108)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44557888954
No 269
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.63 E-value=0.019 Score=61.71 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=53.1
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcC----C
Q 001281 194 AKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITC----K 269 (1108)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~ 269 (1108)
-++++.+..-.. -..++|+|.+|+|||||++.+.+....+...+. ++++-+++..... .++.+.+.. .
T Consensus 162 iraID~~~pi~r----GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~a 233 (422)
T 3ice_A 162 ARVLDLASPIGR----GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHHSCCBT----TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEE
T ss_pred ceeeeeeeeecC----CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEe
Confidence 355666654332 358899999999999999988764322111233 3456677654322 223333311 1
Q ss_pred CCCcccHH-----HHHHHHHHHh--CCceEEEEEeCC
Q 001281 270 PCDLKALN-----EVQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 270 ~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
..+.+... ...-.+.+++ .++.+||++||+
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 11111111 1111222333 589999999999
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.60 E-value=0.19 Score=51.71 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987653
No 271
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.53 E-value=0.05 Score=59.21 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=52.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQLQ 284 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (1108)
-.++.|+|.+|+||||||.++...... .-..++|++....++.. .++.++.... +..+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 368999999999999999988865432 12357889888766643 2444443211 1123445444444
Q ss_pred HHhC-CceEEEEEeCC
Q 001281 285 KALD-GKKFLLVLDDV 299 (1108)
Q Consensus 285 ~~l~-~kr~LlVlDdv 299 (1108)
.... .+.-+||+|.+
T Consensus 133 ~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSV 148 (349)
T ss_dssp HHHTTTCCSEEEEECG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 4443 35669999987
No 272
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.48 E-value=0.088 Score=56.19 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVS 250 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 250 (1108)
.+++|+|.+|+|||||++.++....... -..++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCc
Confidence 5899999999999999998887543211 1135566543
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.45 E-value=0.37 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.+++|+|+.|.|||||.+.+..-..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5899999999999999999987543
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.32 E-value=0.036 Score=58.74 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=30.8
Q ss_pred hHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 192 DKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..++++..++..........+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555544444455789999999999999999999864
No 275
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.30 E-value=0.039 Score=50.26 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=18.3
Q ss_pred CCcceEecccccCCCCCcccCCCCCCCccEEeeecCc
Q 001281 1057 NNLRYLKIENSRALKSLPQEVMGNNAQLEKLFIKYCD 1093 (1108)
Q Consensus 1057 ~~L~~L~l~~c~~l~~lp~~~l~~l~~L~~L~l~~c~ 1093 (1108)
++|+.|+|++ |+|+.+|.+.|..+++|+.|+|.++|
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 3455555544 34555555445555555555555543
No 276
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.28 E-value=0.21 Score=60.19 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=37.7
Q ss_pred CCceeccchhHHHHHHHHhCCC--------CCCCCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 183 ERAVYGRDDDKAKILDMVLSDD--------PSDSMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
-.++.|.++.++++.+.+.-+- .+-...+-|.++|++|.|||.+|+++++...
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 3467788888887776653221 1122345678999999999999999998753
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.08 E-value=0.035 Score=55.71 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=28.9
Q ss_pred hHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 192 DKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-+++|.+.+... .....+|+|+|+.|.|||||++.+....
T Consensus 7 ~~~~~~~~~~~~---~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPR---QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTT---CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555432 2345899999999999999999988643
No 278
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.06 E-value=0.06 Score=58.65 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=50.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQLQ 284 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (1108)
-+++.|.|.+|+||||||.+++...... -..++|++....++... +..++.... +..+.++....+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3689999999999999998887654321 23588999887776432 344443211 1122344444333
Q ss_pred HHh-CCceEEEEEeCC
Q 001281 285 KAL-DGKKFLLVLDDV 299 (1108)
Q Consensus 285 ~~l-~~kr~LlVlDdv 299 (1108)
... ..+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 332 234558999987
No 279
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.97 E-value=0.17 Score=53.30 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999887754
No 280
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.94 E-value=0.13 Score=54.83 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=33.3
Q ss_pred eeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 186 VYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
++|....+..+...+.... ......+|+|.|+.|+||||+|+.+..-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~-~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP-EPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC-CCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC-CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555555555555443 2345789999999999999999988654
No 281
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.90 E-value=0.012 Score=57.74 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCC--CCcccHHHHHHHHHHHhC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKP--CDLKALNEVQVQLQKALD 288 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~ 288 (1108)
.++.|+|+.|+||||++..+..+....+ .. +.++..... ...-...+...++... ....+. ..+.+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~-v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~----~~~~~~~~ 74 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--KK-VAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERP----EEMRKYIE 74 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--CE-EEEEEEC-------CCCEECC----CEECEEESSG----GGGGGGCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--Ce-EEEEeeccc--cccCcccEEecCCCceeeEEECCH----HHHHHHhc
Confidence 5788999999999999976665432221 11 222222110 0000000000011000 000111 12233334
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 289 GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 289 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
++.-+|++|.+..-+.+ |......+.+. |..|++|.++.
T Consensus 75 ~~~dvviIDE~Q~~~~~-~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPS-LFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TTEEEEEECCGGGSCTT-HHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCCEEEEECcccCCHH-HHHHHHHHHHC--CCCEEEEeecc
Confidence 45679999999654333 44444333332 77899988753
No 282
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.86 E-value=0.29 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|.++|.+|+||||++..++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 5899999999999999998887543
No 283
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.78 E-value=0.026 Score=54.98 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+|.|+|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998753
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.53 E-value=0.041 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 378999999999999999999875
No 285
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.45 E-value=0.032 Score=53.98 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 286
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.41 E-value=0.14 Score=52.79 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD 251 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 251 (1108)
.++.|.|.+|+||||+|..++..... .-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 58999999999999999877654321 123567777554
No 287
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.36 E-value=0.18 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 689999999999999999998644
No 288
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.34 E-value=0.54 Score=50.89 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=33.4
Q ss_pred HHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhcc--CCCCcEEEEecCchhhhhh
Q 001281 281 VQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLA--AAPNSKIIVTTRHSHVAST 335 (1108)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~ 335 (1108)
-.+.+.|..++=+|++|.--.. +...-..+...+.. ...|..||++|-+..++..
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 3566778888889999987332 22333344444433 2346778888877665544
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.23 E-value=0.03 Score=54.52 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
|.|.|+|++|+|||||++.+..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999864
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.21 E-value=0.043 Score=53.56 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 6899999999999999999987
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.16 E-value=0.04 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+|.|+|+.|+||||+|+.+....
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998753
No 292
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.15 E-value=0.051 Score=54.12 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|+|+.|.||||+|+.+....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998754
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.13 E-value=0.31 Score=54.28 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=46.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCC-CCCHHHHHHHHHHHhcCCCC---CcccHHHHH-HHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSD-EFDVLSISMALLESITCKPC---DLKALNEVQ-VQLQ 284 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~ 284 (1108)
.++|.++|.+|+||||++..+.......+ ..+..++... .....+-+....+..+.+.. ...+..... ..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 58999999999999999988886543322 1233444332 11222333444444443211 112222222 2333
Q ss_pred HHhCCceEEEEEeCCC
Q 001281 285 KALDGKKFLLVLDDVW 300 (1108)
Q Consensus 285 ~~l~~kr~LlVlDdv~ 300 (1108)
.......-++++|-..
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 3333444566788764
No 294
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.09 E-value=0.18 Score=53.63 Aligned_cols=88 Identities=18% Similarity=0.105 Sum_probs=46.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHH--HHHHHHHHHhcCCC---CCcccHHHH-HHH
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVL--SISMALLESITCKP---CDLKALNEV-QVQ 282 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~~-~~~ 282 (1108)
...++.|+|.+|+||||++..++......+ ..+.++... .+... +-+...++..+.+. ....+...+ ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 358999999999999999998887543211 234444443 22221 22233444443221 011122222 233
Q ss_pred HHHHhCCceEEEEEeCCC
Q 001281 283 LQKALDGKKFLLVLDDVW 300 (1108)
Q Consensus 283 l~~~l~~kr~LlVlDdv~ 300 (1108)
+...+..+.-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444444455578888764
No 295
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.08 E-value=0.048 Score=53.21 Aligned_cols=24 Identities=13% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998643
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.85 E-value=0.041 Score=53.29 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.81 E-value=0.046 Score=53.61 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998753
No 298
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.74 E-value=0.66 Score=49.69 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=36.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLES 265 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 265 (1108)
.++.|.|.+|+||||+|..++...... . ..++|++.. .+..++...+...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~--g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDN--D-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTT--T-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc--C-CeEEEEECC--CCHHHHHHHHHHH
Confidence 689999999999999999887654322 1 457777765 4566666666654
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.62 E-value=0.062 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 300
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.61 E-value=0.24 Score=55.30 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC-HHHHHHHHHHH--hc------CCCCCcccHHH---
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD-VLSISMALLES--IT------CKPCDLKALNE--- 278 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~--l~------~~~~~~~~~~~--- 278 (1108)
..++|+|.+|+||||||+.+..+.... ..+..+++-+++..+ ..++..++... +. ....+.+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 358899999999999999888754321 223456666766543 33444444322 00 01111111111
Q ss_pred -HHHHHHHHh---CCceEEEEEeCC
Q 001281 279 -VQVQLQKAL---DGKKFLLVLDDV 299 (1108)
Q Consensus 279 -~~~~l~~~l---~~kr~LlVlDdv 299 (1108)
..-.+.+++ .++++||++||+
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccH
Confidence 111233333 588999999999
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.56 E-value=0.077 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+++|+|+.|+||||+|+.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999998764
No 302
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.55 E-value=0.064 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.694 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46999999999999999997553
No 303
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.54 E-value=0.059 Score=53.65 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|+|+.|+||||+|+.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 469999999999999999999864
No 304
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.52 E-value=0.062 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+++|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 305
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.49 E-value=0.067 Score=58.28 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHH-HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLS-ISMALLESITCKPCDLKALNEVQVQLQKALDG 289 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 289 (1108)
.+++|+|+.|.||||+.+.+...... ....++ +++.+...... -...++.+... ..+. ......+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~---~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~-~~~~---~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN---TKYHHI-LTIEDPIEFVHESKKCLVNQREV-HRDT---LGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH---HCCCEE-EEEESSCCSCCCCSSSEEEEEEB-TTTB---SCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC---CCCcEE-EEccCcHHhhhhccccceeeeee-cccc---CCHHHHHHHHhhh
Confidence 59999999999999999988764321 111122 22222211000 00000000000 0011 1233467888888
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhhh
Q 001281 290 KKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHVA 333 (1108)
Q Consensus 290 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 333 (1108)
.+=+|++|...+ .+.++.+.... ..|..||+|+-....+
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999953 45555544432 3466788888876554
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.44 E-value=0.062 Score=53.08 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998754
No 307
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.43 E-value=0.3 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+|.|.|++|+||+|.|+.+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998753
No 308
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.43 E-value=0.089 Score=58.08 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=35.8
Q ss_pred ceeccchhHHHHHHHHhC-------C---CCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 185 AVYGRDDDKAKILDMVLS-------D---DPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~-------~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.++|.+..++.+...+.. . .......+.|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468888888888777620 0 0001124568899999999999999999854
No 309
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.43 E-value=0.28 Score=54.23 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=36.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcccc---ccccceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVS---DIKFDIKAWVCVSDEFDVLSISMALLESITC 268 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 268 (1108)
-.++.|+|++|+|||||+..++-..... +..-..++|++....++...+ ..+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 3699999999999999999765221110 001245788887766655443 335555543
No 310
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.38 E-value=0.07 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999975
No 311
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.37 E-value=0.39 Score=53.77 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
...++|.++|.+|+||||+|..+.....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999988876543
No 312
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.37 E-value=0.22 Score=53.55 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=36.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESI 266 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 266 (1108)
.++.|.|.+|+||||+|..++...... -..++|++. ..+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 589999999999999999888764321 234666665 345667777666544
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.25 E-value=0.053 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|+|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 314
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.19 E-value=0.055 Score=53.13 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998643
No 315
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.19 E-value=0.07 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.17 E-value=0.085 Score=52.82 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|+|+.|+||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999999874
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.15 E-value=0.057 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.++|.|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 318
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.13 E-value=0.08 Score=53.20 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|+|+.|+|||||++.+...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999998764
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.13 E-value=0.056 Score=52.72 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.++|.|+|++|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999864
No 320
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.06 E-value=0.08 Score=56.61 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=27.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVS 250 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 250 (1108)
..+||+|.|-|||||||.|..+..-....+ ..+.-|.+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~G---kkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCC---CeEEEEecC
Confidence 369999999999999999977665443222 234555555
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.06 E-value=0.08 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
+..+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4689999999999999999999874
No 322
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.00 E-value=0.074 Score=55.12 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
++|.|+|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999874
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.93 E-value=0.077 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.91 E-value=0.074 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998753
No 325
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.90 E-value=0.34 Score=54.10 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=60.4
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC-HHHHHHHHHHHhcCC----
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD-VLSISMALLESITCK---- 269 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~---- 269 (1108)
++++.|..-.. -.-++|.|..|+|||+|+..+.+.... . +.+.++++-+++... +.++.+++.+.=...
T Consensus 154 rvID~l~pigk----Gqr~gIfgg~GvGKT~L~~~l~~~~a~-~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYRR----GGKIGLFGGAGVGKTVLIMELINNIAK-A-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCCT----TCCEEEEECSSSSHHHHHHHHHHHTTT-T-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeeccccc----CCeEEeecCCCCCchHHHHHHHHHHHh-h-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 45566654322 246899999999999999988875321 1 446788888887764 556666665431111
Q ss_pred ----------CCCccc-----HHHHHHHHHHHhC---CceEEEEEeCC
Q 001281 270 ----------PCDLKA-----LNEVQVQLQKALD---GKKFLLVLDDV 299 (1108)
Q Consensus 270 ----------~~~~~~-----~~~~~~~l~~~l~---~kr~LlVlDdv 299 (1108)
..+.+. .....-.+.++++ ++.+||++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 001111 1122233445554 58999999999
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.90 E-value=0.071 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|.|+.|+||||+|+.+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998753
No 327
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.89 E-value=0.45 Score=51.01 Aligned_cols=27 Identities=37% Similarity=0.299 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
+..+++|+|+.|+||||+++.+....+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998886543
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.83 E-value=0.097 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
...+|+|.|+.|+||||+|+.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999864
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.82 E-value=0.091 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.79 E-value=0.084 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...+||.|.|++|+||||.|+.+....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999998753
No 331
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.79 E-value=0.086 Score=51.71 Aligned_cols=24 Identities=13% Similarity=0.555 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.++++|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 478999999999999999999864
No 332
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.78 E-value=0.63 Score=50.24 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=64.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccc--cccce------------eEEEEeCC----CCCHH---------------H
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSD--IKFDI------------KAWVCVSD----EFDVL---------------S 257 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~------------~~wv~~~~----~~~~~---------------~ 257 (1108)
.+++|+|+.|.|||||.+.++--..... ..++. +.+|.-.. ..++. +
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 5899999999999999999986432110 01111 22221110 01111 1
Q ss_pred HHHHHHHHhcCCCCC-----cccHH-HHHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhcc--CCCCcEEEEecC
Q 001281 258 ISMALLESITCKPCD-----LKALN-EVQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLA--AAPNSKIIVTTR 328 (1108)
Q Consensus 258 ~~~~i~~~l~~~~~~-----~~~~~-~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtR 328 (1108)
...++++.++..... .-+-. ...-.+.+.|-.++=+|+||.--.. +...-+.+...+.. ...|..||++|.
T Consensus 107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 223445555443211 11122 2223566777788889999986332 22222333333332 123667887887
Q ss_pred chhhhhh
Q 001281 329 HSHVAST 335 (1108)
Q Consensus 329 ~~~v~~~ 335 (1108)
+...+..
T Consensus 187 d~~~~~~ 193 (348)
T 3d31_A 187 DQTEARI 193 (348)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 7654443
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.77 E-value=0.084 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998764
No 334
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.77 E-value=0.062 Score=52.11 Aligned_cols=22 Identities=45% Similarity=0.703 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.|.|+|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 335
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.75 E-value=0.087 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998754
No 336
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.74 E-value=0.086 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.++++|+|+.|+|||||+..+.....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 57999999999999999999887643
No 337
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.73 E-value=0.067 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.694 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999998764
No 338
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.70 E-value=0.26 Score=48.06 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=32.3
Q ss_pred hhccCCCcccEEEecCcccc-----ccCcchhcCCCCcEEEeeCcccc-----ccchhhhcCccCcEeeecC
Q 001281 589 DMLPKFKKLRVLSLEGYYVT-----QLPNSIKELKLLRYLNVAGTQIR-----SLPESTSSLMHLRVLILRD 650 (1108)
Q Consensus 589 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~l~~ 650 (1108)
..+..-..|+.|+|++|.+. .+-+.+..-+.|++|+|++|.|. .+-+.+..-..|+.|+|++
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34444456666666666654 23334444455666666666554 2233344444566666654
No 339
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.69 E-value=0.17 Score=49.42 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=65.1
Q ss_pred hhhhhccCCCcccEEEecCc-ccc-----ccCcchhcCCCCcEEEeeCcccc-----ccchhhhcCccCcEeeecCCcCC
Q 001281 586 LLSDMLPKFKKLRVLSLEGY-YVT-----QLPNSIKELKLLRYLNVAGTQIR-----SLPESTSSLMHLRVLILRDCSRL 654 (1108)
Q Consensus 586 ~~~~~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~ 654 (1108)
.+...+.+-+.|+.|+|+++ .|. .+-+.+..-+.|+.|+|++|.|. .+-+.+..-+.|++|+|+.|..-
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455667788999999986 664 34556677789999999999987 34556667788999999997532
Q ss_pred c----ccchhccCCCCccEEeecCCC
Q 001281 655 T----RLPSKMWNLINLRHLDIEGAN 676 (1108)
Q Consensus 655 ~----~lp~~i~~L~~L~~L~l~~~~ 676 (1108)
. .+-..+..-+.|++|+|+++.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCc
Confidence 2 233345555679999987653
No 340
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.63 E-value=0.14 Score=54.80 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=32.0
Q ss_pred eccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 187 YGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
|+-+.-.+++++.+...-. .++...|.|+|+.|+||||+|+.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~-~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE-DNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT-TCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc-cCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3445556666666532211 2335678999999999999999888754
No 341
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.61 E-value=0.082 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
No 342
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.60 E-value=0.72 Score=52.50 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...++|.|+|.+|+||||++..+....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999888543
No 343
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.59 E-value=0.083 Score=52.75 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001281 212 VIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999986
No 344
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.53 E-value=0.093 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|.|+|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.48 E-value=0.087 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 346
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.46 E-value=0.1 Score=51.12 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
..+|.|+|++|+||||+|+.+.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987643
No 347
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.45 E-value=0.13 Score=52.27 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|+|.+|+|||||+..+...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 588999999999999999998875
No 348
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.43 E-value=0.066 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+|.|+|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 349
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.42 E-value=0.064 Score=58.95 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=34.0
Q ss_pred CCceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 183 ERAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-..++|.+..+..+........ ..-|.|+|++|+|||++|+.+.+..
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~-----~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG-----IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG-----GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred chhccChHHHHHHHHHHhhCCC-----CceEEEECCCCccHHHHHHHHHHhC
Confidence 3468999886666554443322 1238899999999999999998754
No 350
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.41 E-value=0.11 Score=55.58 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...+|+|+|+.|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 35799999999999999999887643
No 351
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.41 E-value=0.11 Score=51.03 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
...|++.|+.|+||||+|+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999864
No 352
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.38 E-value=0.39 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...+|.|+|++|+||||+|+.+..+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999998753
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.37 E-value=0.095 Score=53.33 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 354
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.32 E-value=0.41 Score=53.17 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
..++.++|.+|+||||++..++....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999988886543
No 355
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.28 E-value=0.38 Score=53.48 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=59.4
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCC-HHHHHHHHHHHhcCC----
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFD-VLSISMALLESITCK---- 269 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~---- 269 (1108)
++++.|..-.. -.-++|+|..|+|||+|++.+.+.... . +.+.++++-+++... +.++.+++.+.=...
T Consensus 142 r~ID~l~pigk----GQr~~Ifgg~G~GKT~L~~~i~~~~~~-~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYAK----GGKIGLFGGAGVGKTVLIMELINNVAK-A-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEET----TCEEEEEECTTSSHHHHHHHHHHHTTT-T-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEeccccccc----CCeeeeecCCCCChHHHHHHHHHhhHh-h-CCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 55666654321 257899999999999999998875321 1 345677888887654 455666665431111
Q ss_pred ---------CCCcccHH-----HHHHHHHHHh---CCceEEEEEeCC
Q 001281 270 ---------PCDLKALN-----EVQVQLQKAL---DGKKFLLVLDDV 299 (1108)
Q Consensus 270 ---------~~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDdv 299 (1108)
..+.+... ...-.+.+++ +++.+||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11111111 1112233443 578999999998
No 356
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.24 E-value=0.13 Score=48.60 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.++.-.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 699999999999999999988643
No 357
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.21 E-value=0.19 Score=57.43 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=55.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHH-------
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQL------- 283 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l------- 283 (1108)
+.+.|.|.+|.||||++..+.......+ ...++.++.+. .....+.+.++.. ..........-
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~--~~~il~~a~T~-----~Aa~~l~~~~~~~---~~T~h~~~~~~~~~~~~~ 115 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG--ETGIILAAPTH-----AAKKILSKLSGKE---ASTIHSILKINPVTYEEN 115 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSH-----HHHHHHHHHHSSC---EEEHHHHHTEEEEECSSC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC--CceEEEecCcH-----HHHHHHHhhhccc---hhhHHHHhccCccccccc
Confidence 3889999999999999998887653322 12233332221 1122222222211 11111111000
Q ss_pred -----H-HHhCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh
Q 001281 284 -----Q-KALDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH 331 (1108)
Q Consensus 284 -----~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 331 (1108)
. .....+--+||+|++...+...+..+...+. .+.+|++.--..+
T Consensus 116 ~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 116 VLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp EEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred chhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 0 0001123488999997766666666665553 5667777664433
No 358
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.21 E-value=0.12 Score=50.69 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999998864
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.21 E-value=0.11 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|.|+|++|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 360
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.13 E-value=0.11 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998743
No 361
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.13 E-value=0.13 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999874
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.13 E-value=0.11 Score=52.18 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999987543
No 363
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.12 E-value=0.11 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|+.|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 59999999999999999998764
No 364
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.12 E-value=0.079 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 365
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.06 E-value=0.11 Score=53.83 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998743
No 366
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.05 E-value=0.36 Score=51.13 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
..+++|+|.+|+||||++..++....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998887543
No 367
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.03 E-value=0.11 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|+|+.|+||||+++.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.99 E-value=0.097 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+|+|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 369
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.99 E-value=0.13 Score=53.12 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|+|+.|+|||||++.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999988764
No 370
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.90 E-value=0.11 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 371
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.90 E-value=0.061 Score=57.78 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCC
Q 001281 193 KAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEF 253 (1108)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 253 (1108)
--++++.+..-.. -.-++|+|.+|+|||+|++.+.+........+. ++++-+++..
T Consensus 162 GiraID~l~Pigr----GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 162 STRLIDLFAPIGK----GQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHHHSCCBT----TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred cchhhhhcccccC----CceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 3467777754322 246799999999999999988875322111223 3456666543
No 372
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.89 E-value=0.36 Score=51.08 Aligned_cols=89 Identities=19% Similarity=0.022 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC-CCHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE-FDVLSISMALLESITCKP---CDLKALNEVQVQLQK 285 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 285 (1108)
..+++++|.+|+||||++..+....... -..+.++..... ....+.++...+..+.+- ....+..++.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 4799999999999999998887654321 123455554422 222233333444443321 111233333333333
Q ss_pred HhC-CceEEEEEeCCCC
Q 001281 286 ALD-GKKFLLVLDDVWN 301 (1108)
Q Consensus 286 ~l~-~kr~LlVlDdv~~ 301 (1108)
.++ +.-=++++|-.-.
T Consensus 175 ~~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHHTTCSEEEEECCCS
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 333 3333788887633
No 373
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.76 E-value=0.13 Score=54.79 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+++|+|++|+||||+++.++.-.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4699999999999999999887643
No 374
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.74 E-value=0.076 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998753
No 375
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.68 E-value=0.1 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.61 E-value=0.12 Score=51.02 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.55 E-value=0.13 Score=53.35 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+|+|+|+.|+||||+++.+....
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998653
No 378
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.54 E-value=0.12 Score=51.92 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-.+++|+|+.|+|||||.+.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3699999999999999999988653
No 379
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.51 E-value=0.16 Score=51.28 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=29.3
Q ss_pred cchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 189 RDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+..+.+...+... ..++|+|+|.+|+|||||+..+....
T Consensus 14 ~~~~~~~~~~~~~~~-----~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRES-----GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHH-----TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc-----CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344455555544322 26899999999999999999888653
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.49 E-value=0.15 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHh
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVY 231 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~ 231 (1108)
...+|+|+|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999997
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.46 E-value=0.13 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998754
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.43 E-value=0.12 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 383
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.40 E-value=1.2 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999987643
No 384
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.22 E-value=0.17 Score=51.95 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
...|+|.|++|+||||+|+.+.+.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999864
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.21 E-value=0.13 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 386
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.97 E-value=0.15 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.97 E-value=0.17 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+|.|.|+.|+||||+|+.+....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998753
No 388
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.93 E-value=0.47 Score=52.13 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=55.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeE-EEEeCCCCCHHHHHHHHHHH--hcCCCCCcccHHHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKA-WVCVSDEFDVLSISMALLES--ITCKPCDLKALNEVQVQLQKA 286 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~~ 286 (1108)
..+++|+|+.|+||||+++.+...... .....+ ++.-.-......- ..++.+ ++. +. ......+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~---~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~---~~---~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH---HSCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc---CCCcEEEEecccHhhhhccC-ceEEEeeecCC---CH---HHHHHHHHHH
Confidence 468999999999999999988764321 111222 3221100000000 000000 000 11 1123456677
Q ss_pred hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhh
Q 001281 287 LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHV 332 (1108)
Q Consensus 287 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 332 (1108)
+...+-+|++|.+.+ .+........ ...|..|+.|+-...+
T Consensus 206 L~~~pd~illdE~~d--~e~~~~~l~~---~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 206 LREDPDVIFVGEMRD--LETVETALRA---AETGHLVFGTLHTNTA 246 (372)
T ss_dssp TTSCCSEEEESCCCS--HHHHHHHHHH---HTTTCEEEECCCCCSH
T ss_pred hhhCcCEEEECCCCC--HHHHHHHHHH---HhcCCEEEEEECcchH
Confidence 777778999999953 3433332222 2456678888776543
No 389
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.89 E-value=0.14 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998743
No 390
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.89 E-value=0.15 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+|+|.|+.|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998864
No 391
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.81 E-value=0.69 Score=51.25 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.2
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 001281 207 DSMFRVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 207 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45689999999999999999998875
No 392
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.76 E-value=0.41 Score=51.56 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=53.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQKALDGK 290 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 290 (1108)
.+++|+|+.|.|||||++.+..-... -...+.+.-........ .-+.++.-.. .-......+...+..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~----~~g~i~i~~~~e~~~~~----~~~~i~~~~g---gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK----EERIISIEDTEEIVFKH----HKNYTQLFFG---GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT----TSCEEEEESSCCCCCSS----CSSEEEEECB---TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC----CCcEEEECCeecccccc----chhEEEEEeC---CChhHHHHHHHHhhhC
Confidence 48999999999999999999875432 12334333111110000 0000000000 1112234566677788
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh
Q 001281 291 KFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH 331 (1108)
Q Consensus 291 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 331 (1108)
+=+|++|++... +.++.+ ..+..+ +.-+|+||....
T Consensus 241 p~ilildE~~~~--e~~~~l-~~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 241 PDRIILGELRSS--EAYDFY-NVLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp CSEEEECCCCST--HHHHHH-HHHHTT--CCCEEEEEECSS
T ss_pred CCEEEEcCCChH--HHHHHH-HHHhcC--CCEEEEEEcccH
Confidence 889999999552 445433 333222 223555555433
No 393
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.74 E-value=0.1 Score=50.06 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
++++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999887543
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.72 E-value=0.15 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.69 E-value=0.18 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 396
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.67 E-value=0.42 Score=55.81 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=54.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHhC-
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPCDLKALNEVQVQLQ-KALD- 288 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~- 288 (1108)
+++.|.|.+|.||||++..+....... ...+.+..... .....+.+.++.. ......+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~----g~~Vl~~ApT~----~Aa~~L~e~~~~~---a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL----GLEVGLCAPTG----KAARRLGEVTGRT---ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSH----HHHHHHHHHHTSC---EEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc----CCeEEEecCcH----HHHHHhHhhhccc---HHHHHHHHcCCcchhhhh
Confidence 588899999999999999888654321 12344443322 1222233333211 111111110000 0000
Q ss_pred ----CceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecC
Q 001281 289 ----GKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTR 328 (1108)
Q Consensus 289 ----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 328 (1108)
.+--+||+|++..-+...+..+...++ .+.++|+.--
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 123489999996666666666665554 5667776543
No 397
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.65 E-value=0.36 Score=51.65 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
....+++|+|.+|+||||++..++....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999988876543
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.63 E-value=0.15 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 399
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.63 E-value=0.15 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999998887643
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.55 E-value=0.089 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 401
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.55 E-value=0.2 Score=53.26 Aligned_cols=25 Identities=40% Similarity=0.376 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+++|+|+.|+||||+++.++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999887653
No 402
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.54 E-value=0.18 Score=51.28 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=29.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcccc--c-cccceeEEEEeCCC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVS--D-IKFDIKAWVCVSDE 252 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~wv~~~~~ 252 (1108)
-.+++|+|+.|+|||||++.++...... . ......+|+.-...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 4799999999999999999997532211 0 01234677765443
No 403
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.53 E-value=1.5 Score=44.52 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=46.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc-cccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC---------------Cc-
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK-AVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC---------------DL- 273 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------------~~- 273 (1108)
+.+.|+|..|.||||+.....-+. ...+..-...+.+..........+...+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 478999999999998765443321 1111011223434344333344444555544432210 00
Q ss_pred ----ccHHHHHHHHHHHhCCceEEEEEeCCCC
Q 001281 274 ----KALNEVQVQLQKALDGKKFLLVLDDVWN 301 (1108)
Q Consensus 274 ----~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 301 (1108)
.....+.+.+...+.+- -+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 12445555555544433 4789999965
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.53 E-value=0.13 Score=52.86 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+|+|+|+.|+||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998743
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.53 E-value=0.19 Score=53.72 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|+|+.|+|||||++.+...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999988764
No 406
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.50 E-value=0.17 Score=51.63 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.+..-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998753
No 407
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.46 E-value=0.22 Score=52.98 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4699999999999999999999853
No 408
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.44 E-value=0.17 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.+..-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998654
No 409
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.43 E-value=0.14 Score=51.83 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998753
No 410
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.39 E-value=0.18 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.+..-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998643
No 411
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.34 E-value=0.18 Score=53.92 Aligned_cols=23 Identities=43% Similarity=0.475 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999874
No 412
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.34 E-value=0.12 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHh-cC
Q 001281 211 RVIPIVGMAGIGKTTLAREVY-ND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~-~~ 233 (1108)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 689999999999999999998 53
No 413
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.31 E-value=1.2 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 589999999999999999988654
No 414
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.30 E-value=0.46 Score=53.38 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...+++|+|..|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999988654
No 415
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.29 E-value=0.19 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.++++|+|+.|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999988753
No 416
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.23 E-value=0.18 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
.+++|+|+.|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999998873
No 417
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.21 E-value=0.093 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
--++|.|++|+||||+|+.+....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 418
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.10 E-value=0.4 Score=53.01 Aligned_cols=88 Identities=15% Similarity=0.243 Sum_probs=51.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccc-cccceeEEEEeCCCC-CHHHHHHHHHHH--hcC-----CCCCcccHH-----
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAVSD-IKFDIKAWVCVSDEF-DVLSISMALLES--ITC-----KPCDLKALN----- 277 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~----- 277 (1108)
-++|.|..|+|||+|+.++.+.....+ +.-..++++-+++.. .+.++.+++.+. +.. ...+.+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 468999999999999999988654311 011156777777654 345555554432 110 111111111
Q ss_pred HHHHHHHHHh---CCceEEEEEeCC
Q 001281 278 EVQVQLQKAL---DGKKFLLVLDDV 299 (1108)
Q Consensus 278 ~~~~~l~~~l---~~kr~LlVlDdv 299 (1108)
...-.+.+++ .++.+||++||+
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1122344554 378999999998
No 419
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.02 E-value=1.8 Score=50.72 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=66.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccc--cccc-eeEEEEeCC----CCCHHHHH--------------HHHHHHhcCC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSD--IKFD-IKAWVCVSD----EFDVLSIS--------------MALLESITCK 269 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~-~~~wv~~~~----~~~~~~~~--------------~~i~~~l~~~ 269 (1108)
.+++|+|+.|+|||||++.++.-..... ..+. .+.++.-.. ..++.+.+ .++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 5899999999999999999987543211 0111 233332211 11222222 2334444433
Q ss_pred CCC-----cccHHH-HHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccC--CCCcEEEEecCchhhhhhc
Q 001281 270 PCD-----LKALNE-VQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAA--APNSKIIVTTRHSHVASTM 336 (1108)
Q Consensus 270 ~~~-----~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~ 336 (1108)
... .-+-.+ ..-.+.+.|...+-+++||.--.. +...-..+...+... ..|..||++|-+...+..+
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 211 111222 233566777788889999985221 223333333333322 2456777878776555443
No 420
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.99 E-value=1.4 Score=49.57 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=34.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLES 265 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 265 (1108)
-.++.|.|.+|+||||+|..++.+....+ ..++|++... +..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEECCC--CHHHHHHHHHHH
Confidence 36899999999999999998887643321 2466666554 344455555443
No 421
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.96 E-value=2.3 Score=49.82 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.+..-.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 599999999999999999987643
No 422
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.89 E-value=0.39 Score=47.40 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC--DLKALNEVQVQLQKAL 287 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 287 (1108)
-.+..++|.-|.||||.|.....+....+ ....+ +.... +...-...+...++.... ...+.. .+.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g--~kVli-~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAK--QHAIV-FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEE-EECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEE-EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 47889999999999999988777654322 22222 22111 111111233333332211 011111 233333
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchh
Q 001281 288 DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSH 331 (1108)
Q Consensus 288 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 331 (1108)
.++--+|++|.+..-+.+.++.+ ..+.+ .|..||+|-++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecccc
Confidence 33344999999855444455433 33322 3779999999643
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.88 E-value=0.21 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 424
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.87 E-value=0.19 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999874
No 425
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.86 E-value=0.25 Score=51.54 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
....++.+.|.||+||||++..+....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999987543
No 426
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.85 E-value=0.17 Score=51.05 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998753
No 427
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.78 E-value=0.2 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 428
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.76 E-value=0.23 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.++|.|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999999874
No 429
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.75 E-value=0.42 Score=63.00 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQLQ 284 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (1108)
.++|.|+|++|+|||+||.++...... .-..++|+++.+.++... ++.++.... .....++..+.++
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 579999999999999999988775432 223577888887776655 344442211 1112234444444
Q ss_pred HHh-CCceEEEEEeCC
Q 001281 285 KAL-DGKKFLLVLDDV 299 (1108)
Q Consensus 285 ~~l-~~kr~LlVlDdv 299 (1108)
+.. +.+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 443 356779999998
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.66 E-value=1.5 Score=50.52 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3799999999999999999988643
No 431
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.59 E-value=2.1 Score=50.04 Aligned_cols=126 Identities=11% Similarity=0.035 Sum_probs=64.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccc-c--ceeEEEEeC--CC--CCHH--------------HHHHHHHHHhcCC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIK-F--DIKAWVCVS--DE--FDVL--------------SISMALLESITCK 269 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-f--~~~~wv~~~--~~--~~~~--------------~~~~~i~~~l~~~ 269 (1108)
.+++|+|+.|+|||||++.++--....... . ..+.++.-. .. .++. ....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999998754321101 0 012222111 00 0111 2223344444432
Q ss_pred CC-----CcccHHH-HHHHHHHHhCCceEEEEEeCCCCC-ChhhHHHHHhhhccC--CCCcEEEEecCchhhhhhc
Q 001281 270 PC-----DLKALNE-VQVQLQKALDGKKFLLVLDDVWNE-NYSLWEDLKAPFLAA--APNSKIIVTTRHSHVASTM 336 (1108)
Q Consensus 270 ~~-----~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~ 336 (1108)
.. ..-+-.+ ..-.+.+.|..++=+|+||.--.. +...-..+...+... ..|..||++|-+...+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 21 1112222 233567778888899999986321 222233333333321 2366777777776555443
No 432
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.58 E-value=0.21 Score=51.81 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.+..-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 433
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.52 E-value=0.17 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|+.|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988754
No 434
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.43 E-value=0.23 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
++|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 435
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.42 E-value=0.25 Score=47.93 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+.|.|.|+.|+||||||.++....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999999998753
No 436
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.39 E-value=0.36 Score=53.79 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=35.9
Q ss_pred CceeccchhHHHHHHHHhCC--------CC-CCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 184 RAVYGRDDDKAKILDMVLSD--------DP-SDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--------~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++|.++.+..+...+... .. .....+-+.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 45788888888776665221 00 01123568899999999999999998864
No 437
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.39 E-value=0.22 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998754
No 438
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.35 E-value=0.23 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||.+.++.-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 439
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.31 E-value=0.2 Score=50.12 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 440
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.28 E-value=0.23 Score=51.46 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.+..-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 589999999999999999998653
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.25 E-value=0.27 Score=53.41 Aligned_cols=26 Identities=38% Similarity=0.344 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999887653
No 442
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.23 E-value=0.32 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 443
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.22 E-value=0.4 Score=52.47 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 193 KAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++.+.+.... ....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~---~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDS---GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGC---CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc---CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554222 236899999999999999999887543
No 444
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.15 E-value=0.24 Score=51.32 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.+..-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998654
No 445
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.14 E-value=0.26 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||.+.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999999987643
No 446
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.11 E-value=1.8 Score=49.76 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=37.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESI 266 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 266 (1108)
-.++.|.|.+|+||||+|.+++.+.... +-..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 3688999999999999999888765432 123567777654 4566766665443
No 447
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.09 E-value=0.25 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|+.|.|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 448
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.94 E-value=0.24 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 449
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.92 E-value=0.28 Score=52.57 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCC
Q 001281 208 SMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDE 252 (1108)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 252 (1108)
...++|+|+|-||+||||+|..+.......+ ..+.-|.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G---~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEeCCCC
Confidence 3468999999999999999988776543222 23555665543
No 450
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.90 E-value=0.25 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.++.-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998653
No 451
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.89 E-value=0.24 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 452
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.87 E-value=0.26 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 453
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.80 E-value=0.13 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=18.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|.|..|+||||+|+.+...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 454
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.77 E-value=0.25 Score=48.11 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 455
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.77 E-value=0.18 Score=49.13 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..+.|+|++|+||||+|..+++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998888754
No 456
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.67 E-value=0.27 Score=48.29 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999988753
No 457
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.65 E-value=0.27 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.+..-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999998754
No 458
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.60 E-value=0.27 Score=51.32 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.++.-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998654
No 459
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.59 E-value=0.32 Score=57.55 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=36.9
Q ss_pred CceeccchhHHHHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 184 RAVYGRDDDKAKILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g-------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK-------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC-------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 56899998888887777543 478999999999999999998754
No 460
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.58 E-value=0.27 Score=50.95 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998653
No 461
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.48 E-value=0.27 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..|.|.|+.|+||||+|+.+....
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998753
No 462
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.48 E-value=2.4 Score=49.79 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 689999999999999999887654
No 463
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=87.42 E-value=1 Score=50.41 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=54.9
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHH-HHHhcCccccccccc-eeEEEEeCCCCC-HHHHHHHHHHHhcC---
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLA-REVYNDKAVSDIKFD-IKAWVCVSDEFD-VLSISMALLESITC--- 268 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~--- 268 (1108)
+.++.|..-.. -.-++|+|..|+|||+|| ..+.+.. ..+ .++++-+++..+ +.++.+.+.+.=..
T Consensus 164 raID~l~Pigr----GQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIGR----GQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEET----TCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred ccccccccccc----CCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 45566653321 246789999999999996 5677653 234 357777876654 44555555432110
Q ss_pred ----CCCCcccHHH-----HHHHHHHHh--CCceEEEEEeCC
Q 001281 269 ----KPCDLKALNE-----VQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 269 ----~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
...+.+.... ..-.+.+++ .++.+||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1112211111 112333444 579999999998
No 464
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.41 E-value=0.3 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.++|.|+|+.|+||||||..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 578999999999999999999874
No 465
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.31 E-value=0.29 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||.+.++.-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999988643
No 466
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.28 E-value=2.5 Score=47.87 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=33.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHH
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALL 263 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 263 (1108)
.++.|.|.+|+||||+|..++...... .-..++|++... +...+...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHH
Confidence 589999999999999999988764321 112567776554 3455555554
No 467
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.28 E-value=1.3 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 689999999999999999887654
No 468
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.26 E-value=0.28 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|+|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 469
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.25 E-value=0.29 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
.+++|+|+.|+|||||.+.++.-..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5899999999999999999987543
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.20 E-value=0.29 Score=52.26 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYN 232 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1108)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 471
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.10 E-value=1.2 Score=50.39 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=40.9
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCH-HHHHHHH
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDV-LSISMAL 262 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i 262 (1108)
++++.|..-.. -.-++|.|..|+|||+|++.+.+.. +-+.++++-+++.... .++.+++
T Consensus 216 rvID~l~Pigk----Gqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAK----GGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEET----TCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCccc----CCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 55676653321 2578999999999999999987642 3457888888877654 4444443
No 472
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.09 E-value=0.31 Score=49.53 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+|+|.|+.|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 579999999999999999998764
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.04 E-value=0.32 Score=49.68 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
...+|+|+|+.|+||||+++.+...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 474
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.02 E-value=0.15 Score=49.95 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=54.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC--DLKALNEVQVQLQKAL 287 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 287 (1108)
-++..++|..|.||||.+..+.++...++ ....++ .... +...-...+...++.... ...+.. .+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g--~kV~v~-k~~~--d~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAK--QKIQVF-KPEI--DNRYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEE-EEC---------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEE-Eecc--CccchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 37999999999999999988777653322 222222 2110 000000112222221100 001111 233344
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCch
Q 001281 288 DGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHS 330 (1108)
Q Consensus 288 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 330 (1108)
.++--+|++|.+..-+.+..+.+.. +.+ .|..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~-l~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNK-IAE--SGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHH-HHh--CCCEEEEEeccc
Confidence 4433489999975433344444333 222 377999998864
No 475
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.99 E-value=0.38 Score=49.87 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=54.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEE-eCCCCCHHHHHHHHHH--HhcCCCCCcccHHHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVC-VSDEFDVLSISMALLE--SITCKPCDLKALNEVQVQLQKA 286 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 286 (1108)
-.+++|+|+.|+|||||++.+..-... .+.+.+++. ..-.+-.... ..++. .++. +. ..+...+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~---~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC---CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 379999999999999999988764321 112233221 1100000000 00000 0000 01 1223455566
Q ss_pred hCCceEEEEEeCCCCCChhhHHHHHhhhccCCCCcEEEEecCchhh
Q 001281 287 LDGKKFLLVLDDVWNENYSLWEDLKAPFLAAAPNSKIIVTTRHSHV 332 (1108)
Q Consensus 287 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 332 (1108)
+..++=+|++|... +.+....+... ...|.-|++||-+..+
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 65567788999985 33433333322 2346678888876554
No 476
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.92 E-value=0.31 Score=51.42 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.+++|+|+.|.|||||++.+..-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 68999999999999999998764
No 477
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.91 E-value=0.81 Score=45.00 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
.|+|=|..|+||||.++.+++..+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999886544
No 478
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.81 E-value=0.36 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
+-|.++|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999988653
No 479
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.75 E-value=0.3 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 480
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.75 E-value=0.53 Score=45.85 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
...|+++|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999874
No 481
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=86.64 E-value=0.37 Score=53.94 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 209 MFRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
..++|.|+|.+|+||||+|..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999998887754
No 482
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=86.59 E-value=0.55 Score=51.89 Aligned_cols=101 Identities=11% Similarity=0.154 Sum_probs=55.9
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccc--------ccccceeEEEEeCCCCC-HHHHHHHHHHH
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVS--------DIKFDIKAWVCVSDEFD-VLSISMALLES 265 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~~f~~~~wv~~~~~~~-~~~~~~~i~~~ 265 (1108)
+.++.|..-.. -.-++|.|..|+|||+|+..+.+..... ++.--.++++-+++... +.++.+++.+.
T Consensus 136 raID~l~pigr----GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~ 211 (464)
T 3gqb_B 136 STIDVMNTLVR----GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT 211 (464)
T ss_dssp HHHHTTSCCBT----TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT
T ss_pred eeeeccccccc----CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc
Confidence 34555543321 2356889999999999999998765431 10111566777776543 44555554332
Q ss_pred --hcC-----CCCCcccHH-----HHHHHHHHHh---CCceEEEEEeCC
Q 001281 266 --ITC-----KPCDLKALN-----EVQVQLQKAL---DGKKFLLVLDDV 299 (1108)
Q Consensus 266 --l~~-----~~~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDdv 299 (1108)
+.. ...+.+... ...-.+.+++ .++.+||++||+
T Consensus 212 g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 212 GALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred ccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 110 011111111 1222344554 378999999998
No 483
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.55 E-value=1.2 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||++.+..-.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999999998754
No 484
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.54 E-value=0.66 Score=46.45 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
...|.|.|+.|+||||+++.+.+...
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999999988654
No 485
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=86.53 E-value=1.1 Score=50.22 Aligned_cols=96 Identities=24% Similarity=0.261 Sum_probs=54.6
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHH-HHHhcCccccccccc-eeEEEEeCCCCC-HHHHHHHHHHHhcCC--
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLA-REVYNDKAVSDIKFD-IKAWVCVSDEFD-VLSISMALLESITCK-- 269 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-- 269 (1108)
+.++.|..-.. -.-++|+|..|+|||+|| ..+.+.. ..+ .++++-+++... +.++.+.+.+.=...
T Consensus 151 raID~l~Pigr----GQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIGR----GQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCBT----TCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eeccccccccc----CCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 45566654322 245789999999999996 4666653 234 347777877654 445555554421111
Q ss_pred -----CCCcccHHH-----HHHHHHHHh--CCceEEEEEeCC
Q 001281 270 -----PCDLKALNE-----VQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 270 -----~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
..+.+.... ..-.+.+++ .++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111111111 112333444 589999999998
No 486
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.48 E-value=3.3 Score=46.70 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=36.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESI 266 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 266 (1108)
-.++.|.|.+|+||||+|..++...... .-..++|++.. .+..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 3589999999999999999888764321 11246777665 34556666665443
No 487
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.30 E-value=0.4 Score=48.59 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCcc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKA 235 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 235 (1108)
...|+|.|+.|+||||+++.+.....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999988654
No 488
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.26 E-value=0.36 Score=50.35 Aligned_cols=22 Identities=36% Similarity=0.732 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001281 212 VIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988864
No 489
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.12 E-value=4.2 Score=55.88 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCC------------CCCcccHHHHH
Q 001281 213 IPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCK------------PCDLKALNEVQ 280 (1108)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~~~ 280 (1108)
|-++|++|+|||++|+.+......-. .+.++.+...+...+++.+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~~~-----~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~---------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSLYD-----VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD---------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSSCE-----EEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS----------
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCc-----eEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC----------
Q ss_pred HHHHHHhCCceEEEEEeCCCCCChh------hHHHHHhhhccCC------------CCcEEEEecCchh-------hhhh
Q 001281 281 VQLQKALDGKKFLLVLDDVWNENYS------LWEDLKAPFLAAA------------PNSKIIVTTRHSH-------VAST 335 (1108)
Q Consensus 281 ~~l~~~l~~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~iivTtR~~~-------v~~~ 335 (1108)
++++++.+||+.-...+ ..+.+...+..++ .+..+|-++-... -...
T Consensus 1335 --------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1335 --------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp --------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred --------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Q ss_pred ccccceeeCCCCChhhHHHHHHhhhcCCCC-ccchhhhhhHHHHHHHHhc
Q 001281 336 MGSVEHYNLSLLSDDDCWFVFMNHAFYTRD-HIHVQRISGLFHKKVVQKC 384 (1108)
Q Consensus 336 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~~~i~~~c 384 (1108)
..-...+.++..++++-..+|......... .++.. ..+..+++..
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~----~~~~~lv~at 1452 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFR----SYTEPFARAS 1452 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGG----GGHHHHHHHH
T ss_pred hheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHH
No 490
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.10 E-value=0.36 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 001281 211 RVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
.++.|+|++|+||||||..+...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999888753
No 491
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.09 E-value=0.35 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001281 212 VIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997653
No 492
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=86.02 E-value=2.3 Score=47.49 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=54.5
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHH-HHHhcCccccccccc-eeEEEEeCCCCC-HHHHHHHHHHHhcCC--
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLA-REVYNDKAVSDIKFD-IKAWVCVSDEFD-VLSISMALLESITCK-- 269 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-- 269 (1108)
+.++.|..-.. -.-++|.|..|+|||+|| ..+.+.. ..+ .++++-+++..+ +.++.+.+.+.=...
T Consensus 151 kaID~l~Pigr----GQR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPIGR----GQRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCCBT----TCBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeecccccccc----CCEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 45566654322 235789999999999997 5666642 233 357888887654 445555544321111
Q ss_pred -----CCCcccHHH-----HHHHHHHHh--CCceEEEEEeCC
Q 001281 270 -----PCDLKALNE-----VQVQLQKAL--DGKKFLLVLDDV 299 (1108)
Q Consensus 270 -----~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 299 (1108)
..+.+.... ..-.+.+++ +++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 111111111 112233333 589999999998
No 493
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.01 E-value=0.37 Score=49.90 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 211 RVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.+++|+|+.|.|||||.+.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998753
No 494
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.00 E-value=1 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
-.+++|+|+.|.|||||++.+..-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3699999999999999999998754
No 495
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=85.92 E-value=0.75 Score=51.19 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHhCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcCcccccc-ccceeEEEEeCCCCC-HHHHHHHHHHHhcC----
Q 001281 195 KILDMVLSDDPSDSMFRVIPIVGMAGIGKTTLAREVYNDKAVSDI-KFDIKAWVCVSDEFD-VLSISMALLESITC---- 268 (1108)
Q Consensus 195 ~l~~~L~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~---- 268 (1108)
+.++.|..-.. -.-++|.|..|+|||+|+..++++...... .-+.++++-+++... +.++.+++...=..
T Consensus 141 r~ID~l~pigr----GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtv 216 (469)
T 2c61_A 141 STIDGTNTLVR----GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAV 216 (469)
T ss_dssp HHHHTTSCCBT----TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEE
T ss_pred Eeeeeeecccc----CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceE
Confidence 44566643322 235678899999999999999887543210 114667777776643 45555555542110
Q ss_pred ---CCCCcccHH-----HHHHHHHHHhC---CceEEEEEeCC
Q 001281 269 ---KPCDLKALN-----EVQVQLQKALD---GKKFLLVLDDV 299 (1108)
Q Consensus 269 ---~~~~~~~~~-----~~~~~l~~~l~---~kr~LlVlDdv 299 (1108)
...+.+... ...-.+.++++ ++.+||++||+
T Consensus 217 vV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 217 VFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 011111111 12223445543 68999999997
No 496
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.88 E-value=0.78 Score=60.58 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=55.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccccccccceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAVSDIKFDIKAWVCVSDEFDVLSISMALLESITCKPC-----DLKALNEVQVQLQ 284 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 284 (1108)
-.++.|+|++|+||||||.+++...... -..++|++.....+... ++.++.... +..+.+++...++
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~---G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 4699999999999999999988765432 23578888887776542 455554322 2234555555555
Q ss_pred HHh-CCceEEEEEeCCC
Q 001281 285 KAL-DGKKFLLVLDDVW 300 (1108)
Q Consensus 285 ~~l-~~kr~LlVlDdv~ 300 (1108)
... +.+.-+||+|.+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 433 3456699999873
No 497
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.85 E-value=0.64 Score=47.09 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCccc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDKAV 236 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~ 236 (1108)
...|.|.|+.|+||||+++.+......
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999886543
No 498
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.80 E-value=0.39 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYND 233 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1108)
..+++|+|+.|.|||||++.+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999863
No 499
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.74 E-value=0.41 Score=45.92 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
.--|+|+|.+|+|||||.+.+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3568899999999999999988653
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.69 E-value=0.42 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCc
Q 001281 210 FRVIPIVGMAGIGKTTLAREVYNDK 234 (1108)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1108)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
Done!