Query 001282
Match_columns 1108
No_of_seqs 155 out of 180
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 20:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jma_B Herpesvirus entry media 93.8 0.04 1.4E-06 55.4 4.0 64 455-523 15-89 (167)
2 3fl7_A Ephrin receptor; ATP-bi 93.8 0.026 8.8E-07 66.3 3.0 36 457-494 265-302 (536)
3 2uwi_A CRME protein; receptor, 92.5 0.079 2.7E-06 52.2 3.8 62 455-522 16-88 (142)
4 1du3_A Death receptor 5; trail 92.0 0.1 3.5E-06 50.7 3.9 66 453-524 22-93 (130)
5 2hey_R Tumor necrosis factor r 91.8 0.087 3E-06 51.7 3.2 62 456-523 19-91 (146)
6 3me4_A Tumor necrosis factor r 91.1 0.13 4.3E-06 54.2 3.8 65 454-523 44-119 (216)
7 3alq_R Tumor necrosis factor r 90.7 0.15 5E-06 51.4 3.6 64 455-523 21-94 (173)
8 4fhq_A Tumor necrosis factor r 89.7 0.22 7.6E-06 48.8 3.9 63 456-523 18-91 (134)
9 3u3p_A Tumor necrosis factor r 89.6 0.19 6.4E-06 55.9 3.6 66 453-523 23-98 (313)
10 1sg1_X Tumor necrosis factor r 89.2 0.23 7.8E-06 49.2 3.6 63 455-523 15-87 (161)
11 3k51_B Decoy receptor 3; DCR3, 89.1 0.22 7.7E-06 50.7 3.5 64 454-523 20-94 (176)
12 2e4u_A Metabotropic glutamate 87.6 0.13 4.3E-06 59.3 0.7 40 454-497 484-532 (555)
13 3tje_F Tumor necrosis factor r 86.5 0.2 7E-06 50.3 1.3 64 456-524 44-120 (156)
14 1sg1_X Tumor necrosis factor r 85.7 0.25 8.4E-06 49.0 1.5 37 457-493 2-42 (161)
15 3tje_F Tumor necrosis factor r 84.6 1.1 3.7E-05 45.1 5.5 62 453-520 26-94 (156)
16 1ext_A Tumor necrosis factor r 84.2 0.28 9.6E-06 49.0 1.1 63 456-523 20-94 (162)
17 3urf_Z Tumor necrosis factor r 84.1 0.41 1.4E-05 48.7 2.2 36 456-492 100-144 (171)
18 3alq_R Tumor necrosis factor r 83.3 0.3 1E-05 49.2 0.9 39 456-494 5-50 (173)
19 3qd6_R CD40L receptor, tumor n 82.2 1.1 3.8E-05 45.3 4.6 63 456-523 18-91 (177)
20 2odl_A Adhesin; HMW1, secretio 82.1 1.8 6.1E-05 49.2 6.6 62 369-440 250-340 (373)
21 2hey_R Tumor necrosis factor r 81.8 0.52 1.8E-05 46.2 1.9 31 459-492 85-122 (146)
22 3k51_B Decoy receptor 3; DCR3, 81.5 0.69 2.4E-05 47.2 2.7 45 456-503 102-155 (176)
23 3me4_A Tumor necrosis factor r 80.6 0.67 2.3E-05 48.8 2.3 35 457-492 130-173 (216)
24 1ext_A Tumor necrosis factor r 80.6 1.5 5.2E-05 43.7 4.8 38 457-494 3-49 (162)
25 3urf_Z Tumor necrosis factor r 79.7 1.7 5.7E-05 44.2 4.8 62 456-523 20-92 (171)
26 1jma_B Herpesvirus entry media 79.2 0.42 1.4E-05 47.9 0.3 13 467-479 123-135 (167)
27 3u3p_A Tumor necrosis factor r 76.4 1 3.4E-05 50.1 2.2 44 456-502 106-158 (313)
28 2y38_A Laminin subunit alpha-5 73.1 2.4 8.2E-05 48.6 4.3 35 458-492 289-327 (403)
29 3qd6_R CD40L receptor, tumor n 71.9 2 6.7E-05 43.6 2.9 39 456-494 3-46 (177)
30 1du3_A Death receptor 5; trail 66.3 1.6 5.4E-05 42.4 0.8 26 465-493 22-47 (130)
31 1klo_A Laminin; glycoprotein; 65.3 2.3 7.8E-05 42.3 1.8 40 452-491 16-57 (162)
32 4fhq_A Tumor necrosis factor r 63.4 2.5 8.6E-05 41.4 1.6 38 457-494 4-46 (134)
33 1klo_A Laminin; glycoprotein; 57.1 3 0.0001 41.5 0.9 34 458-491 79-113 (162)
34 4aqt_A Laminin subunit gamma-1 57.1 6.6 0.00023 44.5 3.8 68 457-525 274-359 (375)
35 4aqt_A Laminin subunit gamma-1 54.5 4.4 0.00015 46.0 1.8 33 457-492 337-369 (375)
36 1mox_A Epidermal growth factor 52.7 8.2 0.00028 45.2 3.7 35 457-492 269-307 (501)
37 2hr7_A Insulin receptor; hormo 52.6 4.9 0.00017 46.9 1.8 32 457-492 272-306 (486)
38 2pne_A 6.5 kDa glycine-rich an 52.6 26 0.00088 31.0 5.8 28 256-284 12-39 (81)
39 2uwi_A CRME protein; receptor, 50.9 4.4 0.00015 39.9 0.9 42 458-499 82-136 (142)
40 4aqs_A Laminin subunit beta-1; 48.8 4.7 0.00016 46.8 0.9 33 458-492 463-495 (525)
41 1igr_A Insulin-like growth fac 47.9 9 0.00031 44.7 3.1 36 586-625 367-402 (478)
42 2dtg_E Insulin receptor; IR ec 46.4 10 0.00035 46.7 3.4 25 603-627 390-414 (897)
43 2gy5_A Angiopoietin-1 receptor 45.3 15 0.0005 42.0 4.2 21 457-477 218-239 (423)
44 3i2t_A Epidermal growth factor 32.3 19 0.00064 42.8 2.5 31 457-492 271-304 (551)
45 2a55_A C4B-binding protein; co 31.6 38 0.0013 32.1 4.1 68 450-522 25-98 (133)
46 3zyj_B Netrin-G1; cell adhesio 24.2 30 0.001 40.0 2.2 35 458-492 316-359 (426)
47 1n8y_C Protooncoprotein; tyros 22.1 37 0.0013 40.6 2.5 42 457-517 276-321 (608)
48 2l6f_A Focal adhesion kinase 1 27.1 20 0.00067 38.1 0.0 45 276-322 138-199 (215)
49 2gy5_A Angiopoietin-1 receptor 20.4 61 0.0021 37.0 3.7 20 458-477 266-286 (423)
No 1
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=93.79 E-value=0.04 Score=55.39 Aligned_cols=64 Identities=27% Similarity=0.524 Sum_probs=40.6
Q ss_pred EccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCC-ceEEeecCC-ccCCCCCccccCCccc
Q 001282 455 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVRGG-IAETPCPYRCISERYH 523 (1108)
Q Consensus 455 ~gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~r-a~yiy~r~G-~~~~~CpY~C~sdk~~ 523 (1108)
-=+.||+|+| ...|++||.|+|+...+. ...|.+|+. .+.. ..++..... ...+.| .|.+++|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCc-CccccCCcc--cccCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence 3466777764 467999999999986432 356888874 3322 233322222 235678 89888884
No 2
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=93.76 E-value=0.026 Score=66.33 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=29.8
Q ss_pred cCCCCCCC--cccceeCCCCccccccCCCCCCcccCCCCC
Q 001282 457 KACPKGLY--GIFCEECPVGTYKNVTGSDKSLCHQCPPQE 494 (1108)
Q Consensus 457 k~CP~G~y--G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~ 494 (1108)
=.|.+||. +..|+.||.|+||...| ...|.+||.+.
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S 302 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHT 302 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSE
T ss_pred EeccCccccCCceeeecCCCCCcccCC--CCccccCCCCC
Confidence 46999995 77799999999998765 47899999753
No 3
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=92.50 E-value=0.079 Score=52.21 Aligned_cols=62 Identities=26% Similarity=0.606 Sum_probs=40.6
Q ss_pred EccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCC--ccCCCCCccccCCcc
Q 001282 455 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERY 522 (1108)
Q Consensus 455 ~gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G--~~~~~CpY~C~sdk~ 522 (1108)
-=+.||||++ ...|++||.|+|...... ...|.+|..-. . ...+.++.. ...+.| .|.++.|
T Consensus 16 cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~C~--~-~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 16 CCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNR-SPWCHSCRGPC--G-TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCCC--C-TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCeeCccCCCCCCCccCcCCCCCCcccCCC-CCccCCCcCcc--c-CCeeEeecCCCCCCCEe--eCCCCcE
Confidence 3467888875 667999999999987543 34799998632 1 223332322 224678 5888877
No 4
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=91.98 E-value=0.1 Score=50.72 Aligned_cols=66 Identities=20% Similarity=0.400 Sum_probs=43.4
Q ss_pred eEEccCCCCCCC----cccceeCCCC-ccccccCCCCCCcccCCCCCCCCCceEEeecCC-ccCCCCCccccCCcccC
Q 001282 453 TTTGKACPKGLY----GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISERYHM 524 (1108)
Q Consensus 453 TI~gk~CP~G~y----G~fC~eCP~G-tYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G-~~~~~CpY~C~sdk~~~ 524 (1108)
...-..||+|+| ...|++||.| +|...... ...|.+|.. .+. ..++...-. ...+.|. |.+++|..
T Consensus 22 ~~~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~-~~~C~~C~~--C~~-g~~~~~~Ct~t~dtvC~--C~~G~y~~ 93 (130)
T 1du3_A 22 SPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWND-LLFCLRCTR--CDS-GEVELSPCTTTRNTVCQ--CEEGTFRE 93 (130)
T ss_dssp CCBTTBBCTTEEECSSSSCEEECCTTTEECCSSBC-CSSCEECCC--CCT-TEEEEECCCSSSCCEEE--ECTTCEEE
T ss_pred CCccCCCCCCceecCCCCcCccCCCcCEEeCCCCC-CCcCcCCCC--CCc-ceeeeccCCCCCCCEec--CCCCeEEC
Confidence 345678999986 5679999999 99876543 356888885 444 223222211 2356787 88888743
No 5
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=91.79 E-value=0.087 Score=51.69 Aligned_cols=62 Identities=24% Similarity=0.428 Sum_probs=39.7
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCc-eEEeecCCc-cCCCCCccccCCccc
Q 001282 456 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRA-VYISVRGGI-AETPCPYRCISERYH 523 (1108)
Q Consensus 456 gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra-~yiy~r~G~-~~~~CpY~C~sdk~~ 523 (1108)
=+.||+|+| ...|++||.|+|....+. ..|.+|+. .+... .++...-.. ..+.| .|.+++|.
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~~--~~C~~C~~--C~~~~g~~~~~~Ct~t~dt~C--~C~~G~y~ 91 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSS--KPCKPCTW--CNLRSGSERKQLCTATQDTVC--RCRAGTQP 91 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCBS--SCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCCCeecccCCCCCCCCcccCCCCCEECCCCC--CcCcccCC--CCCCCCceEeccCccCCCccc--cCCCCeee
Confidence 478888875 467999999999987654 57999886 33321 233222222 24557 47777763
No 6
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=91.12 E-value=0.13 Score=54.21 Aligned_cols=65 Identities=18% Similarity=0.345 Sum_probs=41.0
Q ss_pred EEccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCCc--cCCCCCccccCCcc
Q 001282 454 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGI--AETPCPYRCISERY 522 (1108)
Q Consensus 454 I~gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G~--~~~~CpY~C~sdk~ 522 (1108)
.-=+.||+|+| ...|++||.|+|....+. ...|.+|+. ......++.++... ..+.| .|.+++|
T Consensus 44 ~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~G~y 118 (216)
T 3me4_A 44 RCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNE-EDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTAGYH 118 (216)
T ss_dssp EEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECTTEE
T ss_pred CCcCCCCCCceecccCCCCCCCccccCCCCCeecCCCC-CCcCCCCCC--CCCCcCeEEEecCCCCCCccc--cCCCCeE
Confidence 44678888876 567999999999986532 367988885 44433344443332 23456 3777766
Q ss_pred c
Q 001282 523 H 523 (1108)
Q Consensus 523 ~ 523 (1108)
.
T Consensus 119 ~ 119 (216)
T 3me4_A 119 W 119 (216)
T ss_dssp E
T ss_pred c
Confidence 3
No 7
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=90.73 E-value=0.15 Score=51.44 Aligned_cols=64 Identities=17% Similarity=0.356 Sum_probs=40.4
Q ss_pred EccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCC-ccCCCCCccccCCccc
Q 001282 455 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISERYH 523 (1108)
Q Consensus 455 ~gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G-~~~~~CpY~C~sdk~~ 523 (1108)
-=+.||+|+| ...|++||.|+|+...+. ...|.+|... .+. ..|.....- ...+.| .|.+++|.
T Consensus 21 cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~~-C~~-g~~~~~~Ct~t~d~~C--~C~~G~y~ 94 (173)
T 3alq_R 21 CCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNW-VPECLSCGSR-CSS-DQVETQACTREQNRIC--TCRPGWYC 94 (173)
T ss_dssp EEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCC-CCT-TEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCeecccCCCCCCCcCCcCCCCccccCCCC-CCccCCCCCc-CCC-CCEEecCCCCCCCCee--ECCCCeEe
Confidence 3478888864 456999999999987654 2579998831 322 233322211 225678 58888773
No 8
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=89.68 E-value=0.22 Score=48.79 Aligned_cols=63 Identities=27% Similarity=0.511 Sum_probs=40.2
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCCcc--CCCCCccccCCccc
Q 001282 456 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIA--ETPCPYRCISERYH 523 (1108)
Q Consensus 456 gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G~~--~~~CpY~C~sdk~~ 523 (1108)
=+.||+|++ ...|++||.|+|..... ....|.+|.. ...+...+.++..-. .+.|. |.+++|.
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC~--C~~G~~c 91 (134)
T 4fhq_A 18 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVCG--CSPGHFC 91 (134)
T ss_dssp EECBCTTEEEEECCC--CCCEEEECCTTEECCSCB-CCSSCEECCC--CCGGGTEEEEECCCSSSCCEEE--ECTTEEE
T ss_pred CCCCCCCCEecccCCCCCCCcccCCCCCCEecCCC-CCCcCcCCCC--CCccCCeEEeccCCCCCCcccc--CCCCCEe
Confidence 356777764 56799999999998643 2467999996 443223333333322 45575 8888774
No 9
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=89.64 E-value=0.19 Score=55.88 Aligned_cols=66 Identities=26% Similarity=0.646 Sum_probs=39.6
Q ss_pred eEEccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCCc-cCCCCCccccCCcc
Q 001282 453 TTTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGI-AETPCPYRCISERY 522 (1108)
Q Consensus 453 TI~gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G~-~~~~CpY~C~sdk~ 522 (1108)
.+-=..||+|+| ...|++||.|+|+.... ....|.+|... ... ..+.....-. ..+.| .|.+++|
T Consensus 23 ~~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N-~~~~C~~C~~~-C~~-g~~~~~~CT~TsDtvC--~C~~G~y 97 (313)
T 3u3p_A 23 VLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHEN-GIEKCHDCSQP-CPW-PMIEKLPCAALTDREC--TCPPGMF 97 (313)
T ss_dssp EEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-CCSSCEECCCC-CCT-TCEEEECSBTTBCCEE--ECCTTEE
T ss_pred CCCCCCCCCCceecCcCCCCCCCccccCCCCceeccCC-CCCcCcccccc-cCC-CCEEecCCcCCCCccc--cCCCCce
Confidence 345567888875 56799999999998642 23679998841 221 2222221111 13457 7877776
Q ss_pred c
Q 001282 523 H 523 (1108)
Q Consensus 523 ~ 523 (1108)
.
T Consensus 98 ~ 98 (313)
T 3u3p_A 98 Q 98 (313)
T ss_dssp E
T ss_pred e
Confidence 3
No 10
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=89.24 E-value=0.23 Score=49.23 Aligned_cols=63 Identities=25% Similarity=0.468 Sum_probs=39.2
Q ss_pred EccCCCCCCC--------cccceeCCCC-ccccccCCCCCCcccCCCCCCCCCceEEeecCC-ccCCCCCccccCCccc
Q 001282 455 TGKACPKGLY--------GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISERYH 523 (1108)
Q Consensus 455 ~gk~CP~G~y--------G~fC~eCP~G-tYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G-~~~~~CpY~C~sdk~~ 523 (1108)
-=+.||+|+| ...|++||.| +|+...+. ...|.+|+. -+. ..++....- ...+.| .|.++.|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~t~C~~C~~g~ty~~~~~~-~~~C~~C~~--C~~-~~~~~~~Ct~t~d~~C--~C~~G~y~ 87 (161)
T 1sg1_X 15 CCKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSA-TEPCKPCTE--CLG-LQSMSAPCVEADDAVC--RCAYGYYQ 87 (161)
T ss_dssp BCCCBCTTEEEEECSSSSSCEEEECCTTTEECCSCBS-SCCCEECCC--CCT-TEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCcCCeECCcCCCCCCcCcCCcCCCccccCCCC-CCcCcCCCC--CCC-cceeecCCCcccCcee--ccCCCeEe
Confidence 3467777765 4569999998 99886542 357888885 332 233322211 124567 48888775
No 11
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=89.11 E-value=0.22 Score=50.74 Aligned_cols=64 Identities=20% Similarity=0.438 Sum_probs=39.0
Q ss_pred EEccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCC--ccCCCCCccccCCcc
Q 001282 454 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERY 522 (1108)
Q Consensus 454 I~gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G--~~~~~CpY~C~sdk~ 522 (1108)
+-=+.||+|+| ...|++||.|+|+.... ....|.+|... ... ..+.++.. .+.+.| .|.+++|
T Consensus 20 ~cC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~~-C~~--~~~~~~~Ct~tsdtvC--~C~~G~~ 93 (176)
T 3k51_B 20 LVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWN-YLERCRYCNVL-CGE--REEEARACHATHNRAC--RCRTGFF 93 (176)
T ss_dssp EEEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECCCC-CCS--SEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCceeCccCCCCCCCccccCCCCCeecCCC-CCCcCccccCc-CCC--CCEEeccCcCCCCcee--eccCCee
Confidence 44466777765 56799999999987542 23579999841 222 22222222 224567 6888777
Q ss_pred c
Q 001282 523 H 523 (1108)
Q Consensus 523 ~ 523 (1108)
.
T Consensus 94 ~ 94 (176)
T 3k51_B 94 A 94 (176)
T ss_dssp E
T ss_pred E
Confidence 3
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=87.64 E-value=0.13 Score=59.28 Aligned_cols=40 Identities=23% Similarity=0.571 Sum_probs=29.7
Q ss_pred EEccCCCCCCCc---------ccceeCCCCccccccCCCCCCcccCCCCCCCC
Q 001282 454 TTGKACPKGLYG---------IFCEECPVGTYKNVTGSDKSLCHQCPPQEFPH 497 (1108)
Q Consensus 454 I~gk~CP~G~yG---------~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ 497 (1108)
+=..+||||+.. +-|.+||.|.+. | |...|.+||.+.-|+
T Consensus 484 ~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 484 QCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred eeCCCCCCCeeeeecCCCeeEEECccCCCceec--C--CCccceeCCcccCcC
Confidence 345789999852 239999999987 4 567899999765444
No 13
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=86.46 E-value=0.2 Score=50.32 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=36.6
Q ss_pred ccCCCCCCC----------cccceeCCCC-ccccccCCCCCCcccCCCCCCCCCceEEeecCCc--cCCCCCccccCCcc
Q 001282 456 GKACPKGLY----------GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGI--AETPCPYRCISERY 522 (1108)
Q Consensus 456 gk~CP~G~y----------G~fC~eCP~G-tYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G~--~~~~CpY~C~sdk~ 522 (1108)
=+.||||+| ...|++||.| +|..... ....|.+|.. .........++..- +.+.| .|.++.|
T Consensus 44 C~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~f 118 (156)
T 3tje_F 44 HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAH-FSSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNFF 118 (156)
T ss_dssp SSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCB-SCSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCeECCcCCCCCCCCcceeCCCCCeeeccCC-CCCcCcCCCC--CCCCcceEEeccccCCCCCee--eCCCCCE
Confidence 356666654 3568888888 7877543 2356777775 44332233222222 24557 7888777
Q ss_pred cC
Q 001282 523 HM 524 (1108)
Q Consensus 523 ~~ 524 (1108)
..
T Consensus 119 c~ 120 (156)
T 3tje_F 119 CN 120 (156)
T ss_dssp CC
T ss_pred eC
Confidence 43
No 14
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=85.71 E-value=0.25 Score=49.01 Aligned_cols=37 Identities=30% Similarity=0.856 Sum_probs=28.4
Q ss_pred cCCCCCCC---cccceeCCCCcccccc-CCCCCCcccCCCC
Q 001282 457 KACPKGLY---GIFCEECPVGTYKNVT-GSDKSLCHQCPPQ 493 (1108)
Q Consensus 457 k~CP~G~y---G~fC~eCP~GtYK~~t-GS~~~~C~pCp~~ 493 (1108)
..||.|+| +.-|..||.|+|.... +.....|.+|+..
T Consensus 2 ~~C~~g~y~~~~~~C~~CppG~~~~~~C~~~~t~C~~C~~g 42 (161)
T 1sg1_X 2 ETCSTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDN 42 (161)
T ss_dssp CCCTTCCBCTTSCBCCCBCTTEEEEECSSSSSCEEEECCTT
T ss_pred CCCCcccCccCCcCCCCCCcCCeECCcCCCCCCcCcCCcCC
Confidence 57999987 5669999999997652 1224679999974
No 15
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=84.57 E-value=1.1 Score=45.08 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=29.8
Q ss_pred eEEccCCCCCCC---cccceeCCCCccccccCCC---CCCcccCCCCCCCCCceEEeecCC-ccCCCCCccccCC
Q 001282 453 TTTGKACPKGLY---GIFCEECPVGTYKNVTGSD---KSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISE 520 (1108)
Q Consensus 453 TI~gk~CP~G~y---G~fC~eCP~GtYK~~tGS~---~~~C~pCp~~~~P~ra~yiy~r~G-~~~~~CpY~C~sd 520 (1108)
|--...||+|.| |.=|..||+|+|....... ...|.||++.+ .|.....+ -....|.+ |+++
T Consensus 26 ~~~~~~C~~~~Y~~~~~CC~~CppG~~v~~~Ct~~~~~t~C~pC~~g~-----ty~~~~n~~~~C~~C~~-C~~~ 94 (156)
T 3tje_F 26 TTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGK-----EYTDKAHFSSKCRRCRL-CDEG 94 (156)
T ss_dssp -------------CCTTCSSCBCTTEEESSCCCSSSCCCCEEECCTTT-----EECSSCBSCSCCEECCC-CCGG
T ss_pred eecccCCCCCcEECcCeECCCCCCCCeECCcCCCCCCCCcceeCCCCC-----eeeccCCCCCcCcCCCC-CCCC
Confidence 444578999987 5558999999997643221 36799999851 22222111 12456675 8775
No 16
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=84.23 E-value=0.28 Score=49.00 Aligned_cols=63 Identities=22% Similarity=0.538 Sum_probs=38.9
Q ss_pred ccCCCCCCC----------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCC--ccCCCCCccccCCccc
Q 001282 456 GKACPKGLY----------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERYH 523 (1108)
Q Consensus 456 gk~CP~G~y----------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G--~~~~~CpY~C~sdk~~ 523 (1108)
=+.||+|+| ...|++||.|+|....+. ...|.+|.. -......+..+.. ...+.| .|.++.|.
T Consensus 20 C~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dt~C--~C~~G~y~ 94 (162)
T 1ext_A 20 CTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSK--CRKEMGQVEISSCTVDRDTVC--GCRKNQYR 94 (162)
T ss_dssp EECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTCEEEECCBTTBCCEE--ECCTTEEE
T ss_pred CCCCCCCcccccccCCCCCCcccccCCCCccccccCC-CCcccccCC--CCCCCCEEEEecccCCCCCCc--cCCCCcee
Confidence 577888875 256999999999987653 457888874 3321112222222 224567 78887774
No 17
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=84.08 E-value=0.41 Score=48.66 Aligned_cols=36 Identities=33% Similarity=0.786 Sum_probs=27.4
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCC
Q 001282 456 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPP 492 (1108)
Q Consensus 456 gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~ 492 (1108)
-+.||+|++ ...|++||.|||.+.. |+...|+||..
T Consensus 100 ct~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~-ss~~~C~p~T~ 144 (171)
T 3urf_Z 100 HRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNET-SSKAPCRKHTN 144 (171)
T ss_dssp CCCBCTTEEEEECCCSSSCCEEEECCTTEECSSC-BSSCCCEECCC
T ss_pred cCcCCCCceEeecCccCCCcccccCCCCcccCCC-CCCCccccCCc
Confidence 367888873 5669999999999863 34578998875
No 18
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=83.34 E-value=0.3 Score=49.17 Aligned_cols=39 Identities=23% Similarity=0.656 Sum_probs=28.0
Q ss_pred ccCCCCCCC-----cccceeCCCCcccccc--CCCCCCcccCCCCC
Q 001282 456 GKACPKGLY-----GIFCEECPVGTYKNVT--GSDKSLCHQCPPQE 494 (1108)
Q Consensus 456 gk~CP~G~y-----G~fC~eCP~GtYK~~t--GS~~~~C~pCp~~~ 494 (1108)
+..|++|.| +.-|..||.|+|.... ......|.+|+..+
T Consensus 5 ~~~C~~g~Y~~~~~~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~gt 50 (173)
T 3alq_R 5 GSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDST 50 (173)
T ss_dssp --CCCTTEEEETTTTEEEECBCTTEEEEECCCSSCCCEEEECCTTE
T ss_pred cCcCCCCccccCCCCcCCCCCCCCCeecccCCCCCCCcCCcCCCCc
Confidence 468999976 4569999999998752 11246799999754
No 19
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=82.21 E-value=1.1 Score=45.35 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=37.3
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCC--ccCCCCCccccCCccc
Q 001282 456 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERYH 523 (1108)
Q Consensus 456 gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G--~~~~~CpY~C~sdk~~ 523 (1108)
=+.||+|+| ...|++||.|+|+...+. ...|.+|.. .+.......++.. .+.+.|. |.++.|.
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~d~~C~--C~~G~~~ 91 (177)
T 3qd6_R 18 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNR-ETHCHQHKY--CDPNLGLRVQQKGTSETDTICT--CEEGWHC 91 (177)
T ss_dssp ECCBCTTBCCCBCCCSSCCCBCCBCCSSEECCSSBC-CSSCEECCC--CCGGGTEEEEECCCTTSCCEEE--ECTTEEE
T ss_pred CCCCCCCCEeccCCCCCCCCccccCCCCceecCCCC-CCcCCCCCc--CCCcCCeEEecCCcCCCCceee--cCCCcEE
Confidence 467777764 457999999999875432 356888875 4332222222222 1234565 7777663
No 20
>2odl_A Adhesin; HMW1, secretion domain, beta helix, cell adhesion; 1.92A {Haemophilus influenzae}
Probab=82.06 E-value=1.8 Score=49.19 Aligned_cols=62 Identities=29% Similarity=0.536 Sum_probs=43.8
Q ss_pred CCccccceEEEEeeeeeeCCCeeEEEecCCCCC------CCC-----------------------cccccceEEEEeecC
Q 001282 369 AGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSH------MGG-----------------------GGGGGGRIHFHWSDI 419 (1108)
Q Consensus 369 gGGGSGGSIlL~a~~l~l~g~G~LsA~GG~Gg~------~gG-----------------------GGGGGGRI~~~~~~i 419 (1108)
...|.||.|.+....+.+.....|.|.|-.|+. ..| +-|-||||.+ |++.
T Consensus 250 ~~~g~GG~V~i~g~~v~l~~gA~I~asG~~GG~v~iGGd~qG~~~~~~~~A~~t~v~~~s~I~a~a~g~GG~viv-wsd~ 328 (373)
T 2odl_A 250 NQQAKGGKLMITGDKVTLKTGAVIDLSGKEGGETYLGGDERGEGKNGIQLAKKTSLEKGSTINVSGKEKGGRAIV-WGDI 328 (373)
T ss_dssp EEEEECCEEEEEEEEEEECTTCEEECCEEECCEEEESSCGGGCCGGGCCCCSEEEECTTCEEECCEEEECCEEEE-ECSE
T ss_pred CCCCCCCEEEEEcceEEecCCCEEEeeccCCCcEEEeCCccccCCccccccceEEEcCCCEEEeeccCCCcEEEE-eccc
Confidence 446899999999999998777888886644331 111 1246889866 7652
Q ss_pred CCCCcccccceeeeeEEecCC
Q 001282 420 PTGDVYQPIASVRGSIRIGGG 440 (1108)
Q Consensus 420 ~tGd~y~pi~~~~G~I~~~GG 440 (1108)
..|.|.|.++||
T Consensus 329 ---------t~f~G~I~ArGg 340 (373)
T 2odl_A 329 ---------ALIDGNINAQGS 340 (373)
T ss_dssp ---------EEECSEEECCCS
T ss_pred ---------eeEeEEEEEecC
Confidence 258899999985
No 21
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=81.78 E-value=0.52 Score=46.17 Aligned_cols=31 Identities=26% Similarity=0.694 Sum_probs=24.6
Q ss_pred CCCCCC-------cccceeCCCCccccccCCCCCCcccCCC
Q 001282 459 CPKGLY-------GIFCEECPVGTYKNVTGSDKSLCHQCPP 492 (1108)
Q Consensus 459 CP~G~y-------G~fC~eCP~GtYK~~tGS~~~~C~pCp~ 492 (1108)
|++|+| +.-|++||.|||.+.. ...|+||++
T Consensus 85 C~~G~y~~~g~~~~~~C~~C~~Gtfs~~~---~~~C~~~t~ 122 (146)
T 2hey_R 85 CRAGTQPLDSYKPGVDCAPCPPGHFSPGD---NQACKPWTN 122 (146)
T ss_dssp ECTTEEESCSSSTTSSEEECCTTEECCST---TCCCEECCC
T ss_pred CCCCeeeCCCcccCcccccCCCCcccCCC---CCCCcCCCC
Confidence 778775 3469999999999852 468999985
No 22
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=81.46 E-value=0.69 Score=47.18 Aligned_cols=45 Identities=22% Similarity=0.533 Sum_probs=32.2
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEe
Q 001282 456 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYIS 503 (1108)
Q Consensus 456 gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy 503 (1108)
-+.||+|++ ...|++||.|||.+.. |+...|+||.+ ......++.
T Consensus 102 ~s~C~pG~~v~~~~t~~~Dt~C~~C~~GtFs~~~-s~~~~C~p~t~--C~~~G~~~~ 155 (176)
T 3k51_B 102 HASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS-SSSEQCQPHRN--CTALGLALN 155 (176)
T ss_dssp CCCCCTTEEEEECCCSSSCCEEEECCTTEECCSC-SSSCCCEECCC--STTTTCCEE
T ss_pred cccCCCCcEEeecCcccCCCccccCCCCcccCCC-CCCCcccCCCc--cCCCCeeEe
Confidence 378999984 4679999999999864 23578999986 443334443
No 23
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=80.61 E-value=0.67 Score=48.77 Aligned_cols=35 Identities=20% Similarity=0.571 Sum_probs=26.7
Q ss_pred cCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCC
Q 001282 457 KACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPP 492 (1108)
Q Consensus 457 k~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~ 492 (1108)
+.||+|.+ ...|++||.|||++... +...|+||..
T Consensus 130 s~C~pG~~v~~~ct~~~Dt~C~~C~~GtFs~~~s-~~~~C~p~T~ 173 (216)
T 3me4_A 130 TECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVFS-STDKCKPWTN 173 (216)
T ss_dssp CCBCTTEEECSSEETTSCCCEEECCTTEECCSCB-SSCCCEECCC
T ss_pred ccCCCCccccccCccCCCCccccCCCceecCCCC-CCCccccCCc
Confidence 57888873 56799999999988642 3567999875
No 24
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=80.59 E-value=1.5 Score=43.73 Aligned_cols=38 Identities=32% Similarity=0.797 Sum_probs=28.4
Q ss_pred cCCCCCCC------cccceeCCCCccccccC---CCCCCcccCCCCC
Q 001282 457 KACPKGLY------GIFCEECPVGTYKNVTG---SDKSLCHQCPPQE 494 (1108)
Q Consensus 457 k~CP~G~y------G~fC~eCP~GtYK~~tG---S~~~~C~pCp~~~ 494 (1108)
..||.|+| +.-|..||.|+|..... .....|.|||.+.
T Consensus 3 ~~C~~g~Y~~~~~~~~CC~~CppG~~~~~~Ct~~~~~t~C~~C~~gt 49 (162)
T 1ext_A 3 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGS 49 (162)
T ss_dssp CCCCTTEEECSSCTTCEEECBCTTEEEEECCSSTTSCCEEEECCTTE
T ss_pred ccCCCCceeccCCCCCCCCCCCCCcccccccCCCCCCcccccCCCCc
Confidence 57999965 23499999999987653 1346799999754
No 25
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=79.71 E-value=1.7 Score=44.23 Aligned_cols=62 Identities=26% Similarity=0.611 Sum_probs=37.3
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCC--ccCCCCCccccCCccc
Q 001282 456 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERYH 523 (1108)
Q Consensus 456 gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G--~~~~~CpY~C~sdk~~ 523 (1108)
=+.||+|+| ...|++||.|+|+..... ...|.+|... ... ..++ ++.. ...+.|. |.+++|.
T Consensus 20 C~~CppG~~~~~~Ct~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~~-C~~-~~~~-~~~CT~tsdtvC~--C~~G~~~ 92 (171)
T 3urf_Z 20 CDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHT-SDECLYCSPV-CKE-LQYV-KQECNRTHNRVCE--CKEGRYL 92 (171)
T ss_dssp EECBCTTEEEEECCCSSSCCEEEECCTTEECCSCBC-CSSCEECCCC-CCT-TEEE-EECCCSSSCCEEE--ECTTEEE
T ss_pred CCCCCCCceecccCCCCCCCccccCCCCcEecCCCC-CCccccCcCc-cCC-CCEE-eccCcCCCCcccc--CCCCcEE
Confidence 355666654 567999999999986432 4679999831 222 2232 2222 1234574 8887773
No 26
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=79.20 E-value=0.42 Score=47.94 Aligned_cols=13 Identities=38% Similarity=1.142 Sum_probs=0.0
Q ss_pred cceeCCCCccccc
Q 001282 467 FCEECPVGTYKNV 479 (1108)
Q Consensus 467 fC~eCP~GtYK~~ 479 (1108)
.|++||.|||.+.
T Consensus 123 ~C~~C~~Gtfs~~ 135 (167)
T 1jma_B 123 LCQNCPPGTFSPN 135 (167)
T ss_dssp -------------
T ss_pred ccccCCCCceeCC
Confidence 3555555555543
No 27
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=76.40 E-value=1 Score=50.14 Aligned_cols=44 Identities=20% Similarity=0.535 Sum_probs=30.8
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEE
Q 001282 456 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYI 502 (1108)
Q Consensus 456 gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yi 502 (1108)
-+.||+|++ ...|++||.|||.+... ....|++|.. ......++
T Consensus 106 Ct~CppG~gV~~~cT~tsDTvC~~Cp~GTFSd~~S-s~~~C~pcT~--C~~~G~~v 158 (313)
T 3u3p_A 106 HTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPS-SVMKCKAYTD--CLSQNLVV 158 (313)
T ss_dssp CCCBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-SSCCCEECCC--SGGGTCEE
T ss_pred cccCCCCCeeeecCCCCCCCccccCCCCeecCCCC-CCcccccCCc--cCCCCceE
Confidence 468888873 56899999999998642 3567999975 44333344
No 28
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=73.13 E-value=2.4 Score=48.57 Aligned_cols=35 Identities=23% Similarity=0.489 Sum_probs=27.6
Q ss_pred CCCCCCCcccceeCCCCcccccc----CCCCCCcccCCC
Q 001282 458 ACPKGLYGIFCEECPVGTYKNVT----GSDKSLCHQCPP 492 (1108)
Q Consensus 458 ~CP~G~yG~fC~eCP~GtYK~~t----GS~~~~C~pCp~ 492 (1108)
.|+.++.|..|+.|..|||.... ......|++|+=
T Consensus 289 ~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~C 327 (403)
T 2y38_A 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNC 327 (403)
T ss_dssp CCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCC
T ss_pred ECcCcCcCCCCCCCCccccCCcccccccCCCcccccccc
Confidence 79999999999999999997631 112347999983
No 29
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=71.87 E-value=2 Score=43.57 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=26.7
Q ss_pred ccCCCCCCC---cccceeCCCCccccccCC--CCCCcccCCCCC
Q 001282 456 GKACPKGLY---GIFCEECPVGTYKNVTGS--DKSLCHQCPPQE 494 (1108)
Q Consensus 456 gk~CP~G~y---G~fC~eCP~GtYK~~tGS--~~~~C~pCp~~~ 494 (1108)
+..|+.+.| |.=|..||.|+|...... ....|.||+.++
T Consensus 3 ~~~C~~~~Y~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gt 46 (177)
T 3qd6_R 3 PTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESE 46 (177)
T ss_dssp ---CCSSCEECSSSEECCBCTTBCCCBCCCSSCCCBCCBCCSSE
T ss_pred cccCCCCcEECCCeECCCCCCCCEeccCCCCCCCCccccCCCCc
Confidence 357999976 445999999999764321 246899999753
No 30
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=66.32 E-value=1.6 Score=42.38 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.4
Q ss_pred cccceeCCCCccccccCCCCCCcccCCCC
Q 001282 465 GIFCEECPVGTYKNVTGSDKSLCHQCPPQ 493 (1108)
Q Consensus 465 G~fC~eCP~GtYK~~tGS~~~~C~pCp~~ 493 (1108)
+.-|..||+|+|.... ...|.||+..
T Consensus 22 ~~~C~~CppG~~~~~~---~t~C~pC~~g 47 (130)
T 1du3_A 22 SPSEGLCPPGHHISED---GRDCISCKYG 47 (130)
T ss_dssp CCBTTBBCTTEEECSS---SSCEEECCTT
T ss_pred CCccCCCCCCceecCC---CCcCccCCCc
Confidence 5669999999998753 4689999975
No 31
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=65.34 E-value=2.3 Score=42.31 Aligned_cols=40 Identities=33% Similarity=0.676 Sum_probs=29.5
Q ss_pred ceEEccCCCCCCCcccceeCCCCccccccCC--CCCCcccCC
Q 001282 452 GTTTGKACPKGLYGIFCEECPVGTYKNVTGS--DKSLCHQCP 491 (1108)
Q Consensus 452 GTI~gk~CP~G~yG~fC~eCP~GtYK~~tGS--~~~~C~pCp 491 (1108)
|+.+=..||+|+.|..|+.|+.|||.+.... ....|++|+
T Consensus 16 g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~ 57 (162)
T 1klo_A 16 KEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQ 57 (162)
T ss_dssp CCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECC
T ss_pred CCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCc
Confidence 3344458999999999999999999864321 123688876
No 32
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=63.37 E-value=2.5 Score=41.38 Aligned_cols=38 Identities=24% Similarity=0.663 Sum_probs=27.4
Q ss_pred cCCCCCCC---cccceeCCCCccccccCC--CCCCcccCCCCC
Q 001282 457 KACPKGLY---GIFCEECPVGTYKNVTGS--DKSLCHQCPPQE 494 (1108)
Q Consensus 457 k~CP~G~y---G~fC~eCP~GtYK~~tGS--~~~~C~pCp~~~ 494 (1108)
..|+.+.| |.=|..||+|+|...... ....|.|||+.+
T Consensus 4 ~~C~~~eY~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gt 46 (134)
T 4fhq_A 4 PSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGT 46 (134)
T ss_dssp CCCCTTEEEETTEEEECBCTTEEEEECCC--CCCEEEECCTTE
T ss_pred CCCCcccEECcCcCCCCCCCCCEecccCCCCCCCcccCCCCCC
Confidence 57999976 444999999999653321 135799999754
No 33
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=57.08 E-value=3 Score=41.47 Aligned_cols=34 Identities=24% Similarity=0.697 Sum_probs=26.0
Q ss_pred CCCCCCCcccceeCCCCccccccC-CCCCCcccCC
Q 001282 458 ACPKGLYGIFCEECPVGTYKNVTG-SDKSLCHQCP 491 (1108)
Q Consensus 458 ~CP~G~yG~fC~eCP~GtYK~~tG-S~~~~C~pCp 491 (1108)
.|++++.|.+|+.|+.|||-+..- .+...|++|+
T Consensus 79 ~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~ 113 (162)
T 1klo_A 79 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACA 113 (162)
T ss_dssp CBCTTEETTTTCEECTTEEECTTCSSGGGSEEECC
T ss_pred CCCCCCcCCCcCcCchhhcCCccccCCCCCCeecc
Confidence 599999999999999999976421 1123588876
No 34
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=57.06 E-value=6.6 Score=44.49 Aligned_cols=68 Identities=21% Similarity=0.430 Sum_probs=42.4
Q ss_pred cCCCCCCCcccceeCCCCccccc----cCCCCCCcccCCCCCCCCCceEE--------------eecCCccCCCCCcccc
Q 001282 457 KACPKGLYGIFCEECPVGTYKNV----TGSDKSLCHQCPPQEFPHRAVYI--------------SVRGGIAETPCPYRCI 518 (1108)
Q Consensus 457 k~CP~G~yG~fC~eCP~GtYK~~----tGS~~~~C~pCp~~~~P~ra~yi--------------y~r~G~~~~~CpY~C~ 518 (1108)
-.|++|+.|..|++|-.|+|... +..+...|++|.=+..-.+-.+. .-+.|.+.+.|. +|.
T Consensus 274 C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce-~C~ 352 (375)
T 4aqt_A 274 CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCE-RCR 352 (375)
T ss_dssp ECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHHSSCCEEECSCTTTEESTTSC-EEC
T ss_pred eeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCccCCCCCCCCCCCCCCcCCCCC-CCC
Confidence 48999999999999999998653 22234569988731111111111 123344556775 688
Q ss_pred CCcccCC
Q 001282 519 SERYHMP 525 (1108)
Q Consensus 519 sdk~~~p 525 (1108)
+++|+.+
T Consensus 353 ~Gyyg~~ 359 (375)
T 4aqt_A 353 ENFFRLG 359 (375)
T ss_dssp SSEECCT
T ss_pred cCcccCc
Confidence 8887654
No 35
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=54.53 E-value=4.4 Score=45.95 Aligned_cols=33 Identities=18% Similarity=0.460 Sum_probs=26.5
Q ss_pred cCCCCCCCcccceeCCCCccccccCCCCCCcccCCC
Q 001282 457 KACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPP 492 (1108)
Q Consensus 457 k~CP~G~yG~fC~eCP~GtYK~~tGS~~~~C~pCp~ 492 (1108)
..|.+|+.|..|++|..|||.... ...|+||.-
T Consensus 337 ~~C~~n~~G~~Ce~C~~Gyyg~~~---~~~C~pCaA 369 (375)
T 4aqt_A 337 TNCRDNTDGAKCERCRENFFRLGN---TEACSPAAA 369 (375)
T ss_dssp CSCTTTEESTTSCEECSSEECCTT---CSSCEEC--
T ss_pred CCCCCCCcCCCCCCCCcCcccCcC---CCCCcCCcC
Confidence 469999999999999999998642 346999984
No 36
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=52.66 E-value=8.2 Score=45.17 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=24.8
Q ss_pred cCCCCCC---Ccccce-eCCCCccccccCCCCCCcccCCC
Q 001282 457 KACPKGL---YGIFCE-ECPVGTYKNVTGSDKSLCHQCPP 492 (1108)
Q Consensus 457 k~CP~G~---yG~fC~-eCP~GtYK~~tGS~~~~C~pCp~ 492 (1108)
+.||.+| .+..|+ +||.|+|.+.. .....|++|..
T Consensus 269 ~~Cp~~~~l~~~g~Cv~~Cp~G~y~~~~-~~~~~C~~C~~ 307 (501)
T 1mox_A 269 KKCPRNYVVTDHGSCVRACGADSYEMEE-DGVRKCKKCEG 307 (501)
T ss_dssp SSCCTTCEECTTSBEESSCCSSCCCBCS-SSSCBCCCC-C
T ss_pred cccCcccEeccCCEEeccCCCCCeecCC-CCCCcCcCCCc
Confidence 4799997 367798 89999998631 12347999973
No 37
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Probab=52.62 E-value=4.9 Score=46.86 Aligned_cols=32 Identities=31% Similarity=0.625 Sum_probs=22.4
Q ss_pred cCCCCCC--Ccccce-eCCCCccccccCCCCCCcccCCC
Q 001282 457 KACPKGL--YGIFCE-ECPVGTYKNVTGSDKSLCHQCPP 492 (1108)
Q Consensus 457 k~CP~G~--yG~fC~-eCP~GtYK~~tGS~~~~C~pCp~ 492 (1108)
..|. .| ++..|+ .||.|+|.+. +...|.||..
T Consensus 272 ~sC~-~~~~~~~~CV~~CP~g~~~~~---~~~~C~~C~~ 306 (486)
T 2hr7_A 272 QGCH-QYVIHNNKCIPECPSGYTMNS---SNLLCTPCLG 306 (486)
T ss_dssp SSCC-CCEEETTEEESSCCTTEEECT---TSCBEEECSS
T ss_pred cccc-cEeeECCEecccCCCCcccCC---CCCccccCCc
Confidence 4565 45 366776 7999999875 2357999984
No 38
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C*
Probab=52.58 E-value=26 Score=30.96 Aligned_cols=28 Identities=54% Similarity=1.183 Sum_probs=17.0
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCcc
Q 001282 256 GCTGGVGRGKVIGNGVGSGGGHGGKGGLG 284 (1108)
Q Consensus 256 Gc~aG~G~G~~~~~g~GgGGGHGG~GG~G 284 (1108)
||++-.|.-.... +-|.-|+|||.||.+
T Consensus 12 gcpgtagaagsvg-gpgcdgghggnggng 39 (81)
T 2pne_A 12 GCPGTAGAAGSVG-GPGCDGGHGGNGGNG 39 (81)
T ss_dssp BSSCCCCCCCCCC-CTTCBCCCCCCCCCB
T ss_pred CCCcccccccccc-CCCccCCcCccCCCC
Confidence 6665555432222 456777888888776
No 39
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=50.88 E-value=4.4 Score=39.87 Aligned_cols=42 Identities=19% Similarity=0.563 Sum_probs=21.4
Q ss_pred CCCCCCC------c---ccc---eeCCCCcccccc-CCCCCCcccCCCCCCCCCc
Q 001282 458 ACPKGLY------G---IFC---EECPVGTYKNVT-GSDKSLCHQCPPQEFPHRA 499 (1108)
Q Consensus 458 ~CP~G~y------G---~fC---~eCP~GtYK~~t-GS~~~~C~pCp~~~~P~ra 499 (1108)
.|.+|+| . ..| ..||.|++.... -..-..|.+||...+....
T Consensus 82 ~C~~G~yc~~~~~~~~C~~C~~~t~C~pG~~v~~~t~~~dt~C~~C~~GtfS~~~ 136 (142)
T 2uwi_A 82 HCDSNSYCLLKASDGNCVTCAPKTKCGRGYGKKGEDEMGNTICKKCRKGTYSKTG 136 (142)
T ss_dssp EECTTEEEEEECTTSCEEEEEECCCCCTTEEEEEECTTSCEEEEECC--------
T ss_pred eCCCCcEecccCCCCCCCCCcCCCcCCcCEeeCCCCCCCCCcccCCCCCcccCCc
Confidence 3888887 1 356 578999885321 1122459999987665543
No 40
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=48.75 E-value=4.7 Score=46.75 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=12.4
Q ss_pred CCCCCCCcccceeCCCCccccccCCCCCCcccCCC
Q 001282 458 ACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPP 492 (1108)
Q Consensus 458 ~CP~G~yG~fC~eCP~GtYK~~tGS~~~~C~pCp~ 492 (1108)
.|++|+.|..|++|+.|+|.... +...|.+|+=
T Consensus 463 ~C~~g~~G~~Ce~C~~G~~g~~~--~~~~C~~C~C 495 (525)
T 4aqs_A 463 YCKRLVTGQRCDQCLPQHWGLSN--DLDGCRPCDC 495 (525)
T ss_dssp CBCTTCCSTTTCC----------------------
T ss_pred ECCCCCcCCCcccCCCCccCCCC--CCCCCcCCCC
Confidence 59999999999999999997543 3356988873
No 41
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=47.94 E-value=9 Score=44.67 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=20.8
Q ss_pred CcccchhhhHHhhcccCccccccceEeEEEecCCCCCCCc
Q 001282 586 HSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPW 625 (1108)
Q Consensus 586 ~~f~~LeSL~Ev~~~~r~eDl~~Hv~RmYf~G~NT~~~PW 625 (1108)
.++.||++|+.+... .+.....=||++-+....+-|
T Consensus 367 ~sLsFl~nL~~I~G~----~l~~~~~al~I~~N~nL~~L~ 402 (478)
T 1igr_A 367 VSLSFLKNLRLILGE----EQLEGNYSFYVLDNQNLQQLW 402 (478)
T ss_dssp SCSTTCCSCCEECCS----SCBTTTEEEEEECCSSCCCSS
T ss_pred cCchHHcCeeEEeCc----ccCCCcEEEEEecCcCccccc
Confidence 345567777655433 333334558888776666554
No 42
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=46.41 E-value=10 Score=46.66 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=18.2
Q ss_pred ccccccceEeEEEecCCCCCCCccc
Q 001282 603 AEESHSHVHRMYFMGPNTFSQPWHL 627 (1108)
Q Consensus 603 ~eDl~~Hv~RmYf~G~NT~~~PW~L 627 (1108)
-+++.++.+=+|++-+.....=|--
T Consensus 390 g~~~~~~~~~l~~~~n~~l~~l~~~ 414 (897)
T 2dtg_E 390 GETLEIGNYSFYALDNQNLRQLWDW 414 (897)
T ss_dssp CTTCBTTTEEEEEESCTTCCBSCCT
T ss_pred CeeccCCCEEEEEEeccChhhhCcc
Confidence 4577778788999987777766643
No 43
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=45.31 E-value=15 Score=42.05 Aligned_cols=21 Identities=38% Similarity=0.944 Sum_probs=18.2
Q ss_pred cCCCCCCCccccee-CCCCccc
Q 001282 457 KACPKGLYGIFCEE-CPVGTYK 477 (1108)
Q Consensus 457 k~CP~G~yG~fC~e-CP~GtYK 477 (1108)
=.||+||.|..|+. |+.|+|-
T Consensus 218 C~C~~G~~G~~Ce~~C~~g~~g 239 (423)
T 2gy5_A 218 CICPPGFMGRTCEKACELHTFG 239 (423)
T ss_dssp EECCTTEESTTSCEECCTTEES
T ss_pred EeCCCCccCCCcccccCCCCCC
Confidence 35999999999996 9999873
No 44
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=32.30 E-value=19 Score=42.82 Aligned_cols=31 Identities=29% Similarity=0.680 Sum_probs=23.7
Q ss_pred cCCCCCCC--cccc-eeCCCCccccccCCCCCCcccCCC
Q 001282 457 KACPKGLY--GIFC-EECPVGTYKNVTGSDKSLCHQCPP 492 (1108)
Q Consensus 457 k~CP~G~y--G~fC-~eCP~GtYK~~tGS~~~~C~pCp~ 492 (1108)
+.||.+|. +..| .+||.|+|+. ...|.||..
T Consensus 271 ~~Cp~~~~~~~~~Cv~~CP~g~~~~-----~~~C~~C~~ 304 (551)
T 3i2t_A 271 KECPGHLLRDNGACVRSCPQDKMDK-----GGECVPCNG 304 (551)
T ss_dssp SSCCTTSEEETTEEESSCCTTEEES-----SSBEEECSS
T ss_pred hhCCHHHcccCCcccccCCCCCccc-----CCeeeECCC
Confidence 58998873 6678 4799999874 257999973
No 45
>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens}
Probab=31.59 E-value=38 Score=32.12 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCceEEccCCCCCC-C--cccceeCCC-CccccccCCCCCCcc--cCCCCCCCCCceEEeecCCccCCCCCccccCCcc
Q 001282 450 ENGTTTGKACPKGL-Y--GIFCEECPV-GTYKNVTGSDKSLCH--QCPPQEFPHRAVYISVRGGIAETPCPYRCISERY 522 (1108)
Q Consensus 450 ~~GTI~gk~CP~G~-y--G~fC~eCP~-GtYK~~tGS~~~~C~--pCp~~~~P~ra~yiy~r~G~~~~~CpY~C~sdk~ 522 (1108)
..|+.....|.+|| . |..=..|-. |++.. ...|+ .|+.-..|..+.......-.....|.|.|++++.
T Consensus 25 ~~g~~v~y~C~~Gy~~l~G~~~~~C~~~G~Ws~-----~p~C~~~~C~~p~~~~nG~~~~~~~~~~g~~v~~~C~~Gy~ 98 (133)
T 2a55_A 25 KTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVY-----NTFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFF 98 (133)
T ss_dssp CTTCCCCCBCCTTEESCCSCCCCEECSSSSEEC-----CCCSEECBCCCCCCCTTBCCCCCSTTBSSCBCCCCBCTTCB
T ss_pred CCCCEEEEEeCCCCcccCCCCEEEECCCCeECC-----CCcCccCCCcCCCccCCceEEcCCCCcCCCEEEEEcCCCCE
Confidence 45777788999999 3 666666655 77764 25797 6987544444443322222336789999998654
No 46
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=24.19 E-value=30 Score=39.97 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=26.5
Q ss_pred CCCCCCCcccceeCCCCcccccc--C-------CCCCCcccCCC
Q 001282 458 ACPKGLYGIFCEECPVGTYKNVT--G-------SDKSLCHQCPP 492 (1108)
Q Consensus 458 ~CP~G~yG~fC~eCP~GtYK~~t--G-------S~~~~C~pCp~ 492 (1108)
.|+.++.|..|+.|..|+|.... | .....|+||+-
T Consensus 316 ~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~C 359 (426)
T 3zyj_B 316 ECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSIS 359 (426)
T ss_dssp CCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC
T ss_pred eCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCC
Confidence 39999999999999999985421 1 12356999885
No 47
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Probab=22.07 E-value=37 Score=40.63 Aligned_cols=42 Identities=24% Similarity=0.620 Sum_probs=0.0
Q ss_pred cCCCCCC---Ccccc-eeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCCccCCCCCccc
Q 001282 457 KACPKGL---YGIFC-EECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRC 517 (1108)
Q Consensus 457 k~CP~G~---yG~fC-~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G~~~~~CpY~C 517 (1108)
+.||..| .+..| .+||.|+|......+...|+||. ..||-.|
T Consensus 276 ~~Cp~~~~~~~~~~Cv~~CP~g~~~~~~~~~~~~C~~C~-------------------g~C~k~C 321 (608)
T 1n8y_C 276 TTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCS-------------------KPCARVC 321 (608)
T ss_dssp SSCCTTCEECTTSBEESSCCTTEEEEECTTSCEEEEECS-------------------SCCCCCE
T ss_pred hcCCcccEeccCCeEeccCCCCCcccccCCCCCccccCC-------------------CCCCCcC
No 48
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=27.14 E-value=20 Score=38.07 Aligned_cols=45 Identities=31% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCCCCCcccCCCcc-----------------ccCCcccCCCCCCCccCCCCCCCCCCCCCCCc
Q 001282 276 GHGGKGGLGCFNDSC-----------------VEGGISYGNANLPCELGSGSGNDTSGNSTAGG 322 (1108)
Q Consensus 276 GHGG~GG~G~~ng~~-----------------~~GG~~YG~~~lP~~~GSGGG~~~~~~GGaGG 322 (1108)
.|||.||.|.-.-+. ++-..+||... -..|+||-++.++.||.||
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~psg~~~--~~~~~~~~~~~~~~~~~~~ 199 (215)
T 2l6f_A 138 PHGGSGGSGSGGSGGSGSNLSELDRLLLELNAVQHNPPSGSGS--GSGGSGGSGGSGGSGGSGG 199 (215)
No 49
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=20.45 E-value=61 Score=36.97 Aligned_cols=20 Identities=40% Similarity=0.988 Sum_probs=17.9
Q ss_pred CCCCCCCccccee-CCCCccc
Q 001282 458 ACPKGLYGIFCEE-CPVGTYK 477 (1108)
Q Consensus 458 ~CP~G~yG~fC~e-CP~GtYK 477 (1108)
.|++||.|..|+. |+.|+|-
T Consensus 266 ~C~~G~~G~~C~~~C~~G~~G 286 (423)
T 2gy5_A 266 SCATGWKGLQCNEACHPGFYG 286 (423)
T ss_dssp ECCBTCBSGGGCBCCCTTBCS
T ss_pred EeCCCcccccccCccCCCCcC
Confidence 6999999999996 9999973
Done!