BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001283
         (1108 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM 16790) GN=hmu PE=4
            SV=1
          Length = 9159

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 87/243 (35%), Gaps = 38/243 (15%)

Query: 226  DGLVEGSVVHFHRARTISVQSSGAI-SASGMGCTGGVGR---------GKVIGNGVGSGG 275
            DG   G +V F RA   +  +SG + S +G    G VGR           V   G  S G
Sbjct: 4615 DGDDVGGLVGFTRASVRNATASGEVESTTGANVGGLVGRLSHDDSTHVTNVTATGTVSAG 4674

Query: 276  GHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLS 335
                 G +G   DS   G I+   A    ++   S  D  G ++ GG   ++G FEH   
Sbjct: 4675 ADHVGGLVGFIEDSDDNGNITMSGARATGDIEMTS--DDGGPASVGG---LVGRFEH--- 4726

Query: 336  SLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSV 395
                       G +  D+S         G +   GG   G ++  L  L   D  VL + 
Sbjct: 4727 -----------GSAITDVSA-------TGDVSSVGGNEVGGLIGRLDQLASTD--VLKNA 4766

Query: 396  GGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTT 455
               G     G   GG I FH +        Q   S      +GG +G H   GG  G + 
Sbjct: 4767 SATGDVTTTGQKVGGLIGFHRTGSVDNSHAQGNVSAGSGDNVGGLIGVHGRNGGRVGDSY 4826

Query: 456  GKA 458
             + 
Sbjct: 4827 ARG 4829



 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 91/254 (35%), Gaps = 41/254 (16%)

Query: 220  VEDIVVDGLVEGSVVHFHRARTISV-----QSSGAI---SASGMGCTGGVGRGKVIG--- 268
            V ++  DGLV  S    + +   ++     QSSGA+   SASG         G +IG   
Sbjct: 4483 VGEVTADGLVTDSTASVNTSGNQAIGGLVGQSSGAVNNASASGEVTATSKYAGGLIGDHQ 4542

Query: 269  --------NGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTA 320
                    N  G+  G    GGL           I    AN+     +G    TSG  T 
Sbjct: 4543 STTPVTDVNASGTVSGTSSAGGL-----------IGRAQANVTDATATGDVVSTSG--TK 4589

Query: 321  GGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGG-----AGGGSGG 375
             GG+I        +  +S  G+V +DG     L       VRN +  G      G   GG
Sbjct: 4590 VGGLIGNHQAGQTIVDVSATGTVSSDGDDVGGLVGFTRASVRNATASGEVESTTGANVGG 4649

Query: 376  TILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSI 435
             +    H     DS  +++V   G+   G    GG + F       G++    A   G I
Sbjct: 4650 LVGRLSHD----DSTHVTNVTATGTVSAGADHVGGLVGFIEDSDDNGNITMSGARATGDI 4705

Query: 436  RIGGGLGGHELGGG 449
             +    GG    GG
Sbjct: 4706 EMTSDDGGPASVGG 4719



 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 106/284 (37%), Gaps = 56/284 (19%)

Query: 231  GSVVHFHRARTISVQSSGAISASG-------MGCTGGV-----GRGKVIGNGVGSGGGHG 278
            G ++      ++  +SS A++ SG       +G  GG+       G V   G  +GG  G
Sbjct: 5637 GGLIGTTELNSVLTESSAAVNTSGSQRVGGLVGTAGGIVNTSTANGTVTATGQYAGGLIG 5696

Query: 279  GKGGLGCFNDSCVEGGIS--------YGNANLPCELGSGSG--NDTSGNSTAGGGIIVMG 328
               G     ++   G ++         G  N      S SG  N TSG+   G    ++G
Sbjct: 5697 ESQGTIPVTNTAASGNVTGTADVGGLIGRTNTTVRNSSASGVVNSTSGDGVGG----LIG 5752

Query: 329  SFEHPLSSLSVEGSVKADG-QSFEDL-----STKKNYVVRNGSIGGAGGGSGGTILLFLH 382
                 +   S  G+V + G  S   L     +   N   R   I   G   GG +     
Sbjct: 5753 RSLAAVHDSSASGAVSSTGGNSVGGLIGNAGADVTNSAGRGNVISSTGNEVGGLVGRLED 5812

Query: 383  TLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIAS--VRGSIRIGGG 440
            + +I DS    +V   GS +GG  G           I TG+  +  A+  V G+  +GG 
Sbjct: 5813 SSNIRDSHARGTVTAAGSDVGGLAG----------TIDTGNATRVFATGQVEGNSAVGGL 5862

Query: 441  LGGHELG---------GGENGT-TTGKACPKGL--YGIFCEECP 472
            +G +  G         G  N T  TG A P G   YG+  ++ P
Sbjct: 5863 VGKNNGGTLSDVYWDKGATNQTNATGSATPTGADGYGLVNDDTP 5906


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.139    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,625,059
Number of Sequences: 539616
Number of extensions: 21093025
Number of successful extensions: 105244
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 565
Number of HSP's that attempted gapping in prelim test: 75849
Number of HSP's gapped (non-prelim): 10396
length of query: 1108
length of database: 191,569,459
effective HSP length: 128
effective length of query: 980
effective length of database: 122,498,611
effective search space: 120048638780
effective search space used: 120048638780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)