Query 001287
Match_columns 1107
No_of_seqs 501 out of 3163
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 20:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 1.5E-40 3.4E-45 370.8 41.9 544 34-844 61-617 (775)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-39 2.4E-44 337.5 29.2 362 71-698 110-479 (480)
3 KOG0318 WD40 repeat stress pro 100.0 3.6E-36 7.8E-41 323.7 50.5 457 26-699 49-601 (603)
4 KOG0271 Notchless-like WD40 re 100.0 7.9E-39 1.7E-43 331.3 28.2 368 23-631 98-479 (480)
5 KOG0319 WD40-repeat-containing 100.0 9.8E-37 2.1E-41 340.5 45.5 572 41-889 25-614 (775)
6 KOG0306 WD40-repeat-containing 100.0 1.4E-36 3.1E-41 338.6 44.2 500 34-723 64-642 (888)
7 KOG0291 WD40-repeat-containing 100.0 3.6E-34 7.8E-39 319.7 58.0 479 25-700 4-508 (893)
8 KOG0291 WD40-repeat-containing 100.0 2.3E-34 4.9E-39 321.3 52.3 478 31-708 92-620 (893)
9 KOG1983 Tomosyn and related SN 100.0 7.6E-33 1.6E-37 343.7 39.5 262 779-1107 723-993 (993)
10 KOG0318 WD40 repeat stress pro 100.0 2.8E-30 6.1E-35 278.4 50.3 497 37-701 20-561 (603)
11 KOG0306 WD40-repeat-containing 100.0 1.1E-30 2.3E-35 291.9 47.9 591 46-847 33-665 (888)
12 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-33 1.8E-37 291.1 22.2 282 73-631 172-458 (459)
13 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-32 2.4E-37 290.1 22.6 283 116-698 174-458 (459)
14 KOG1408 WD40 repeat protein [F 100.0 1.6E-30 3.6E-35 287.3 37.5 602 35-907 78-726 (1080)
15 KOG1063 RNA polymerase II elon 100.0 7E-29 1.5E-33 275.7 38.8 548 28-700 47-699 (764)
16 KOG0286 G-protein beta subunit 100.0 4.2E-29 9.1E-34 251.6 31.2 290 70-631 49-343 (343)
17 KOG0296 Angio-associated migra 100.0 1.8E-28 3.8E-33 254.3 35.6 342 26-633 55-398 (399)
18 KOG0286 G-protein beta subunit 100.0 1.1E-28 2.3E-33 248.7 31.4 215 17-282 38-261 (343)
19 KOG0273 Beta-transducin family 100.0 8.4E-29 1.8E-33 264.0 31.0 323 73-699 175-522 (524)
20 KOG0273 Beta-transducin family 100.0 2.3E-28 4.9E-33 260.7 32.3 335 29-633 172-523 (524)
21 KOG2106 Uncharacterized conser 100.0 3.1E-26 6.6E-31 245.8 47.8 409 28-700 96-521 (626)
22 KOG0315 G-protein beta subunit 100.0 9.8E-28 2.1E-32 236.3 29.4 185 47-281 10-198 (311)
23 KOG0315 G-protein beta subunit 100.0 1.9E-27 4E-32 234.3 30.6 298 89-657 11-309 (311)
24 KOG0279 G protein beta subunit 100.0 4.1E-27 9E-32 236.1 30.9 205 31-282 11-224 (315)
25 KOG0296 Angio-associated migra 100.0 7.4E-27 1.6E-31 242.3 33.4 339 67-700 55-398 (399)
26 KOG1539 WD repeat protein [Gen 100.0 7.6E-26 1.7E-30 256.5 43.7 520 33-707 74-613 (910)
27 KOG0276 Vesicle coat complex C 100.0 1E-25 2.3E-30 247.2 41.2 200 35-282 13-217 (794)
28 KOG0263 Transcription initiati 100.0 1.2E-27 2.6E-32 271.5 24.5 297 76-659 378-696 (707)
29 KOG0295 WD40 repeat-containing 100.0 4.1E-27 8.8E-32 243.9 24.8 297 32-632 105-405 (406)
30 KOG0292 Vesicle coat complex C 100.0 2.6E-25 5.5E-30 252.3 40.3 222 36-280 10-236 (1202)
31 KOG0279 G protein beta subunit 100.0 6.1E-26 1.3E-30 227.7 29.8 291 115-700 13-313 (315)
32 KOG0263 Transcription initiati 100.0 3.3E-27 7.1E-32 268.1 23.1 152 489-701 499-650 (707)
33 KOG2048 WD40 repeat protein [G 100.0 9.6E-24 2.1E-28 235.2 48.0 515 33-701 23-549 (691)
34 KOG0292 Vesicle coat complex C 99.9 6.2E-25 1.3E-29 249.2 38.0 313 75-634 8-322 (1202)
35 KOG0285 Pleiotropic regulator 99.9 3E-26 6.5E-31 236.2 24.8 200 32-282 148-350 (460)
36 KOG0645 WD40 repeat protein [G 99.9 4.4E-25 9.6E-30 220.6 32.2 205 29-280 8-225 (312)
37 KOG0293 WD40 repeat-containing 99.9 2.5E-26 5.4E-31 240.9 24.0 200 32-281 221-426 (519)
38 PLN00181 protein SPA1-RELATED; 99.9 3.2E-25 6.8E-30 280.8 37.1 321 56-632 457-792 (793)
39 KOG0276 Vesicle coat complex C 99.9 6.5E-24 1.4E-28 233.1 39.9 283 73-629 10-295 (794)
40 KOG1539 WD repeat protein [Gen 99.9 1.9E-24 4.1E-29 245.3 36.6 468 36-699 160-647 (910)
41 KOG0265 U5 snRNP-specific prot 99.9 5.1E-25 1.1E-29 223.2 28.0 203 28-281 40-247 (338)
42 PLN00181 protein SPA1-RELATED; 99.9 2.4E-24 5.1E-29 272.8 40.4 198 33-281 481-691 (793)
43 KOG0285 Pleiotropic regulator 99.9 4.5E-25 9.8E-30 227.6 26.4 288 71-634 146-440 (460)
44 KOG0266 WD40 repeat-containing 99.9 7.5E-25 1.6E-29 257.8 32.1 201 34-282 158-366 (456)
45 KOG1063 RNA polymerase II elon 99.9 3.4E-23 7.3E-28 230.8 42.0 598 30-849 9-702 (764)
46 cd00200 WD40 WD40 domain, foun 99.9 4.7E-24 1E-28 235.8 35.7 283 72-631 5-289 (289)
47 KOG0645 WD40 repeat protein [G 99.9 2.7E-24 5.8E-29 215.1 29.5 292 70-633 8-311 (312)
48 cd00200 WD40 WD40 domain, foun 99.9 4.7E-24 1E-28 235.8 33.8 199 33-281 7-208 (289)
49 KOG0284 Polyadenylation factor 99.9 7.2E-26 1.6E-30 237.7 18.0 199 34-282 95-296 (464)
50 KOG0265 U5 snRNP-specific prot 99.9 3.3E-24 7.2E-29 217.4 28.8 284 115-696 45-334 (338)
51 KOG0295 WD40 repeat-containing 99.9 5.5E-25 1.2E-29 228.2 22.8 289 109-699 100-405 (406)
52 KOG0282 mRNA splicing factor [ 99.9 1.4E-25 3E-30 240.8 18.4 201 32-280 211-415 (503)
53 KOG0266 WD40 repeat-containing 99.9 6.3E-24 1.4E-28 250.0 31.9 291 71-633 154-454 (456)
54 KOG0284 Polyadenylation factor 99.9 2.8E-25 6.1E-30 233.3 17.4 286 115-700 94-380 (464)
55 KOG0275 Conserved WD40 repeat- 99.9 2.4E-25 5.1E-30 226.1 15.9 281 478-879 208-503 (508)
56 KOG0281 Beta-TrCP (transducin 99.9 2.8E-25 6.1E-30 227.8 16.3 190 36-282 198-390 (499)
57 KOG0282 mRNA splicing factor [ 99.9 5.9E-25 1.3E-29 236.0 17.5 295 65-631 203-503 (503)
58 KOG1408 WD40 repeat protein [F 99.9 8.2E-23 1.8E-27 226.8 34.8 496 34-701 121-714 (1080)
59 KOG0278 Serine/threonine kinas 99.9 4.7E-24 1E-28 210.3 18.6 203 30-282 9-215 (334)
60 KOG0281 Beta-TrCP (transducin 99.9 1.2E-24 2.7E-29 223.1 14.1 276 118-703 198-480 (499)
61 KOG0293 WD40 repeat-containing 99.9 1.2E-23 2.6E-28 220.9 21.5 289 115-700 222-513 (519)
62 KOG0310 Conserved WD40 repeat- 99.9 1E-22 2.2E-27 219.4 26.5 282 75-632 25-308 (487)
63 KOG0313 Microtubule binding pr 99.9 2.2E-22 4.8E-27 210.1 26.4 313 108-700 96-418 (423)
64 KOG2106 Uncharacterized conser 99.9 9.7E-21 2.1E-25 203.8 38.3 414 37-699 202-625 (626)
65 KOG0275 Conserved WD40 repeat- 99.9 1.9E-23 4.1E-28 212.3 16.7 206 29-280 207-423 (508)
66 KOG0772 Uncharacterized conser 99.9 2.8E-22 6E-27 216.1 24.9 311 115-698 165-485 (641)
67 KOG0313 Microtubule binding pr 99.9 1.1E-21 2.4E-26 204.9 27.0 211 33-282 103-332 (423)
68 KOG0316 Conserved WD40 repeat- 99.9 2.4E-21 5.3E-26 189.7 26.8 203 29-283 11-216 (307)
69 KOG0316 Conserved WD40 repeat- 99.9 1.8E-21 3.9E-26 190.7 24.8 271 65-658 6-280 (307)
70 KOG0268 Sof1-like rRNA process 99.9 5.6E-23 1.2E-27 212.9 14.9 202 27-282 58-261 (433)
71 KOG0772 Uncharacterized conser 99.9 8.8E-22 1.9E-26 212.2 23.2 184 66-280 157-347 (641)
72 KOG0643 Translation initiation 99.9 1.1E-20 2.4E-25 188.6 28.3 162 70-282 4-179 (327)
73 KOG0288 WD40 repeat protein Ti 99.9 7.1E-22 1.5E-26 208.3 17.9 281 115-697 173-458 (459)
74 KOG0299 U3 snoRNP-associated p 99.9 9.9E-21 2.1E-25 202.6 26.4 289 69-622 135-444 (479)
75 KOG0640 mRNA cleavage stimulat 99.9 2.2E-21 4.8E-26 196.8 19.9 209 30-282 107-337 (430)
76 KOG0643 Translation initiation 99.9 7.4E-21 1.6E-25 189.9 23.1 210 29-283 4-223 (327)
77 KOG1407 WD40 repeat protein [F 99.9 3.5E-20 7.5E-25 184.7 27.2 265 115-658 18-282 (313)
78 KOG0278 Serine/threonine kinas 99.9 1.8E-21 3.9E-26 192.1 17.4 286 70-636 8-300 (334)
79 KOG0299 U3 snoRNP-associated p 99.9 2.2E-20 4.8E-25 200.0 25.8 204 27-282 134-358 (479)
80 KOG0274 Cdc4 and related F-box 99.9 4.1E-20 8.9E-25 216.5 30.6 192 34-282 207-402 (537)
81 KOG1445 Tumor-specific antigen 99.9 4.6E-19 1E-23 194.7 35.9 163 491-703 587-753 (1012)
82 KOG2048 WD40 repeat protein [G 99.9 1.2E-18 2.7E-23 194.7 39.9 294 75-634 24-320 (691)
83 PTZ00421 coronin; Provisional 99.9 7.2E-19 1.6E-23 206.1 40.2 296 487-895 24-332 (493)
84 KOG0647 mRNA export protein (c 99.9 9.5E-20 2.1E-24 185.2 26.3 199 34-282 26-230 (347)
85 KOG0277 Peroxisomal targeting 99.9 1.7E-20 3.7E-25 186.1 19.3 148 494-699 159-308 (311)
86 KOG0283 WD40 repeat-containing 99.9 1.7E-20 3.7E-25 215.8 22.3 297 74-637 265-580 (712)
87 KOG0305 Anaphase promoting com 99.9 1.3E-19 2.9E-24 204.0 27.9 275 80-635 181-463 (484)
88 KOG0973 Histone transcription 99.9 1.3E-19 2.8E-24 213.4 28.3 169 38-281 16-202 (942)
89 KOG0288 WD40 repeat protein Ti 99.9 8.3E-21 1.8E-25 200.3 16.4 198 32-282 172-373 (459)
90 KOG0277 Peroxisomal targeting 99.8 7.5E-20 1.6E-24 181.5 20.8 282 80-632 12-308 (311)
91 KOG0274 Cdc4 and related F-box 99.8 2.3E-19 5E-24 210.2 28.7 277 74-638 206-487 (537)
92 KOG0310 Conserved WD40 repeat- 99.8 1.5E-19 3.3E-24 195.2 24.2 200 33-282 24-227 (487)
93 KOG0640 mRNA cleavage stimulat 99.8 8.4E-20 1.8E-24 185.4 20.9 170 68-281 104-292 (430)
94 KOG1963 WD40 repeat protein [G 99.8 4.8E-18 1E-22 196.1 37.8 547 31-706 12-589 (792)
95 KOG0294 WD40 repeat-containing 99.8 3.2E-19 6.9E-24 182.4 24.9 200 27-281 34-238 (362)
96 KOG1036 Mitotic spindle checkp 99.8 7.3E-19 1.6E-23 179.9 27.3 195 35-280 13-207 (323)
97 KOG0973 Histone transcription 99.8 2E-19 4.4E-24 211.8 26.2 325 117-705 13-363 (942)
98 KOG0283 WD40 repeat-containing 99.8 1.6E-19 3.4E-24 207.9 23.6 249 33-351 265-575 (712)
99 KOG2055 WD40 repeat protein [G 99.8 3.9E-19 8.3E-24 190.2 24.7 195 35-280 213-417 (514)
100 PTZ00421 coronin; Provisional 99.8 7.3E-19 1.6E-23 206.1 29.4 206 31-283 71-293 (493)
101 KOG1446 Histone H3 (Lys4) meth 99.8 5.5E-18 1.2E-22 174.6 31.8 201 34-282 13-219 (311)
102 KOG0289 mRNA splicing factor [ 99.8 1E-18 2.3E-23 185.4 26.4 284 78-632 221-505 (506)
103 KOG0646 WD40 repeat protein [G 99.8 3.1E-19 6.8E-24 191.6 22.8 139 497-659 190-330 (476)
104 KOG0308 Conserved WD40 repeat- 99.8 3.1E-19 6.8E-24 198.0 22.8 212 32-282 18-245 (735)
105 KOG2096 WD40 repeat protein [G 99.8 1.2E-18 2.6E-23 177.9 25.2 171 71-280 81-258 (420)
106 KOG0308 Conserved WD40 repeat- 99.8 1.2E-19 2.7E-24 201.2 19.5 150 490-700 178-327 (735)
107 KOG0294 WD40 repeat-containing 99.8 3.1E-18 6.7E-23 175.3 28.1 179 49-280 3-197 (362)
108 KOG1446 Histone H3 (Lys4) meth 99.8 8.5E-18 1.8E-22 173.2 31.0 287 75-633 13-303 (311)
109 PTZ00420 coronin; Provisional 99.8 4.3E-18 9.4E-23 200.1 32.8 178 53-281 50-249 (568)
110 KOG0300 WD40 repeat-containing 99.8 2.4E-18 5.2E-23 175.1 26.4 331 71-701 143-477 (481)
111 PTZ00420 coronin; Provisional 99.8 1.8E-18 3.9E-23 203.3 29.6 207 29-282 68-295 (568)
112 KOG0647 mRNA export protein (c 99.8 3.7E-18 8E-23 173.8 27.4 273 116-659 26-304 (347)
113 KOG0641 WD40 repeat protein [G 99.8 1.5E-17 3.3E-22 161.8 30.1 303 68-633 24-349 (350)
114 KOG1407 WD40 repeat protein [F 99.8 4.4E-18 9.4E-23 169.8 26.9 275 72-625 16-294 (313)
115 KOG1036 Mitotic spindle checkp 99.8 2.2E-18 4.7E-23 176.4 24.6 158 71-282 8-165 (323)
116 KOG0300 WD40 repeat-containing 99.8 1.7E-18 3.7E-23 176.2 23.4 214 18-282 130-388 (481)
117 KOG0305 Anaphase promoting com 99.8 2.7E-18 5.9E-23 193.4 27.6 191 40-282 182-378 (484)
118 PF08596 Lgl_C: Lethal giant l 99.8 3.6E-18 7.7E-23 193.7 28.7 322 538-914 3-358 (395)
119 KOG0301 Phospholipase A2-activ 99.8 3.1E-18 6.7E-23 191.7 26.4 116 30-147 9-130 (745)
120 KOG0289 mRNA splicing factor [ 99.8 9E-18 1.9E-22 178.4 27.3 199 36-282 220-421 (506)
121 KOG0641 WD40 repeat protein [G 99.8 4.7E-17 1E-21 158.3 29.3 149 497-699 196-348 (350)
122 KOG0268 Sof1-like rRNA process 99.8 4.5E-19 9.8E-24 184.2 14.9 283 73-636 63-348 (433)
123 KOG2055 WD40 repeat protein [G 99.8 1E-17 2.2E-22 179.5 25.1 296 117-699 213-511 (514)
124 KOG1332 Vesicle coat complex C 99.8 3.5E-18 7.6E-23 168.9 18.0 208 28-280 4-241 (299)
125 KOG4283 Transcription-coupled 99.8 3.8E-17 8.3E-22 165.3 25.6 226 23-283 31-279 (397)
126 KOG1332 Vesicle coat complex C 99.8 4.1E-18 8.9E-23 168.4 18.2 166 71-282 6-195 (299)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.1E-16 8.9E-21 175.0 35.8 185 47-282 1-189 (300)
128 KOG0646 WD40 repeat protein [G 99.8 1.7E-17 3.8E-22 178.4 23.0 190 48-280 51-247 (476)
129 KOG0269 WD40 repeat-containing 99.8 4.8E-18 1E-22 192.3 19.6 147 497-700 191-340 (839)
130 KOG1274 WD40 repeat protein [G 99.8 7.9E-17 1.7E-21 186.1 28.4 214 26-282 4-220 (933)
131 KOG0650 WD40 repeat nucleolar 99.8 5E-17 1.1E-21 178.8 24.9 149 491-697 574-732 (733)
132 KOG0301 Phospholipase A2-activ 99.8 8E-17 1.7E-21 180.5 26.9 136 497-700 153-288 (745)
133 KOG2096 WD40 repeat protein [G 99.8 6.7E-17 1.4E-21 165.3 23.9 198 29-280 80-308 (420)
134 KOG0639 Transducin-like enhanc 99.8 2.4E-17 5.1E-22 177.4 21.5 282 71-632 414-703 (705)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 8.7E-16 1.9E-20 172.4 34.9 141 89-280 2-145 (300)
136 KOG2445 Nuclear pore complex c 99.8 3.2E-16 6.9E-21 160.1 27.1 160 497-700 128-318 (361)
137 KOG2445 Nuclear pore complex c 99.7 5.6E-16 1.2E-20 158.4 25.7 180 115-336 11-193 (361)
138 KOG1273 WD40 repeat protein [G 99.7 2.8E-16 6.2E-21 160.6 23.5 204 33-281 22-227 (405)
139 KOG4328 WD40 protein [Function 99.7 3.2E-16 6.9E-21 168.1 24.2 200 33-280 184-399 (498)
140 KOG0321 WD40 repeat-containing 99.7 3.2E-16 7E-21 174.0 24.8 233 28-282 42-303 (720)
141 KOG0639 Transducin-like enhanc 99.7 6.5E-17 1.4E-21 174.0 18.5 149 487-699 555-703 (705)
142 KOG0321 WD40 repeat-containing 99.7 4E-16 8.7E-21 173.3 22.2 164 490-702 224-393 (720)
143 KOG1274 WD40 repeat protein [G 99.7 2.4E-15 5.3E-20 174.0 28.7 160 71-282 8-170 (933)
144 KOG0264 Nucleosome remodeling 99.7 8.4E-16 1.8E-20 165.5 22.4 274 18-352 107-404 (422)
145 KOG0269 WD40 repeat-containing 99.7 2.2E-16 4.8E-21 179.0 17.9 203 30-282 34-252 (839)
146 KOG0264 Nucleosome remodeling 99.7 4.2E-16 9.1E-21 167.8 18.9 217 33-281 175-405 (422)
147 KOG4283 Transcription-coupled 99.7 6.9E-15 1.5E-19 149.1 25.1 161 71-280 38-219 (397)
148 KOG0267 Microtubule severing p 99.7 1.9E-17 4E-22 186.1 7.0 168 480-708 67-234 (825)
149 KOG1188 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 158.1 19.8 190 48-283 41-245 (376)
150 COG2319 FOG: WD40 repeat [Gene 99.7 5.4E-13 1.2E-17 156.2 45.1 202 30-282 60-273 (466)
151 KOG1273 WD40 repeat protein [G 99.7 1E-14 2.3E-19 149.3 25.8 162 490-701 160-323 (405)
152 KOG0267 Microtubule severing p 99.7 5.5E-17 1.2E-21 182.4 9.2 196 28-272 63-260 (825)
153 KOG1445 Tumor-specific antigen 99.7 2.7E-14 5.8E-19 157.7 29.1 153 32-210 37-202 (1012)
154 KOG1538 Uncharacterized conser 99.7 6.6E-14 1.4E-18 155.5 30.0 148 78-280 14-162 (1081)
155 KOG4378 Nuclear protein COP1 [ 99.7 7.2E-15 1.6E-19 158.4 21.1 125 497-659 179-304 (673)
156 KOG0650 WD40 repeat nucleolar 99.6 3E-14 6.6E-19 157.2 25.5 204 26-280 390-637 (733)
157 KOG0270 WD40 repeat-containing 99.6 8.4E-15 1.8E-19 156.9 19.4 202 33-282 171-406 (463)
158 KOG0302 Ribosome Assembly prot 99.6 1.3E-14 2.7E-19 152.2 17.8 232 19-278 194-436 (440)
159 KOG4328 WD40 protein [Function 99.6 5E-14 1.1E-18 151.4 22.4 154 495-701 335-496 (498)
160 KOG1034 Transcriptional repres 99.6 8.6E-14 1.9E-18 143.7 23.2 167 72-283 34-214 (385)
161 KOG1240 Protein kinase contain 99.6 1E-13 2.2E-18 164.5 26.8 183 62-283 1034-1228(1431)
162 KOG4227 WD40 repeat protein [G 99.6 5.2E-14 1.1E-18 147.4 21.1 165 32-211 53-228 (609)
163 KOG0302 Ribosome Assembly prot 99.6 7.4E-15 1.6E-19 154.0 14.7 160 489-700 217-378 (440)
164 KOG1963 WD40 repeat protein [G 99.6 1.4E-11 2.9E-16 143.4 42.7 339 486-920 208-558 (792)
165 KOG0322 G-protein beta subunit 99.6 5.5E-14 1.2E-18 141.0 18.7 76 71-148 9-86 (323)
166 KOG1538 Uncharacterized conser 99.6 5.2E-12 1.1E-16 140.7 34.3 197 37-280 14-252 (1081)
167 KOG1009 Chromatin assembly com 99.6 6.6E-13 1.4E-17 141.0 25.5 170 26-216 6-203 (434)
168 KOG2919 Guanine nucleotide-bin 99.6 5.3E-13 1.2E-17 137.5 23.4 200 40-281 54-282 (406)
169 KOG0322 G-protein beta subunit 99.6 8E-14 1.7E-18 139.8 16.9 154 497-699 167-322 (323)
170 COG2319 FOG: WD40 repeat [Gene 99.6 3.1E-11 6.7E-16 141.2 42.0 353 51-708 43-408 (466)
171 KOG1517 Guanine nucleotide bin 99.6 7.9E-13 1.7E-17 154.6 26.5 156 493-702 1219-1383(1387)
172 KOG1034 Transcriptional repres 99.5 7.7E-13 1.7E-17 136.8 22.5 301 493-886 53-375 (385)
173 KOG1517 Guanine nucleotide bin 99.5 8.9E-13 1.9E-17 154.2 25.4 206 30-281 1059-1288(1387)
174 KOG4378 Nuclear protein COP1 [ 99.5 9.2E-14 2E-18 150.0 15.4 202 37-286 81-286 (673)
175 KOG0307 Vesicle coat complex C 99.5 4.9E-14 1.1E-18 167.5 14.4 171 40-282 11-194 (1049)
176 KOG1912 WD40 repeat protein [G 99.5 3.1E-12 6.6E-17 145.2 27.7 469 34-658 54-573 (1062)
177 KOG0307 Vesicle coat complex C 99.5 5.3E-14 1.2E-18 167.2 11.7 207 34-286 63-290 (1049)
178 KOG1587 Cytoplasmic dynein int 99.5 1.8E-12 3.9E-17 151.1 24.2 270 177-634 243-517 (555)
179 KOG0642 Cell-cycle nuclear pro 99.5 2.4E-13 5.1E-18 150.1 15.3 133 71-212 289-430 (577)
180 PRK11028 6-phosphogluconolacto 99.5 6.2E-11 1.3E-15 135.1 35.9 142 92-281 6-157 (330)
181 KOG2919 Guanine nucleotide-bin 99.5 2.8E-12 6E-17 132.3 21.3 163 488-703 163-331 (406)
182 KOG0270 WD40 repeat-containing 99.5 6.3E-13 1.4E-17 142.7 16.3 207 31-282 239-451 (463)
183 KOG1523 Actin-related protein 99.5 2.2E-11 4.7E-16 126.0 26.2 222 34-282 9-238 (361)
184 KOG4227 WD40 repeat protein [G 99.5 7.3E-12 1.6E-16 131.5 22.7 168 71-282 51-227 (609)
185 KOG0644 Uncharacterized conser 99.5 2.4E-13 5.2E-18 155.1 12.1 160 72-280 186-346 (1113)
186 KOG0771 Prolactin regulatory e 99.5 9.5E-13 2.1E-17 141.2 15.7 198 39-281 148-355 (398)
187 PRK11028 6-phosphogluconolacto 99.4 1.7E-10 3.7E-15 131.5 33.4 190 50-280 5-205 (330)
188 KOG4497 Uncharacterized conser 99.4 8.2E-11 1.8E-15 121.6 26.5 138 40-198 13-153 (447)
189 KOG0290 Conserved WD40 repeat- 99.4 1.4E-11 3E-16 125.5 20.6 206 30-282 91-320 (364)
190 KOG1524 WD40 repeat-containing 99.4 7.7E-11 1.7E-15 128.9 27.5 93 490-632 193-285 (737)
191 KOG0642 Cell-cycle nuclear pro 99.4 2E-12 4.4E-17 142.8 15.3 217 33-282 292-563 (577)
192 KOG0290 Conserved WD40 repeat- 99.4 8.2E-11 1.8E-15 119.9 25.4 177 29-282 38-229 (364)
193 KOG1007 WD repeat protein TSSC 99.4 4.7E-11 1E-15 121.5 23.6 150 493-698 182-359 (370)
194 KOG0644 Uncharacterized conser 99.4 1E-12 2.2E-17 150.2 11.7 156 32-206 187-344 (1113)
195 KOG1587 Cytoplasmic dynein int 99.4 3.8E-11 8.2E-16 140.1 25.0 193 57-280 222-428 (555)
196 KOG1007 WD repeat protein TSSC 99.4 1.2E-11 2.5E-16 125.8 17.8 222 37-280 125-361 (370)
197 KOG0303 Actin-binding protein 99.4 9.9E-12 2.2E-16 131.4 17.9 212 24-282 70-296 (472)
198 KOG0303 Actin-binding protein 99.4 2.8E-11 6E-16 128.1 20.8 216 532-852 77-300 (472)
199 KOG1009 Chromatin assembly com 99.4 5.4E-11 1.2E-15 126.7 22.3 179 486-701 16-196 (434)
200 KOG2394 WD40 protein DMR-N9 [G 99.4 5.5E-11 1.2E-15 130.5 22.8 94 538-659 292-385 (636)
201 KOG1188 WD40 repeat protein [G 99.4 4.7E-11 1E-15 124.6 20.4 158 494-707 83-249 (376)
202 KOG0649 WD40 repeat protein [G 99.4 4.3E-11 9.4E-16 118.9 18.6 202 37-283 12-238 (325)
203 KOG0771 Prolactin regulatory e 99.4 6.2E-12 1.3E-16 135.0 13.7 175 488-698 149-352 (398)
204 KOG4497 Uncharacterized conser 99.4 2.7E-10 5.9E-15 117.9 24.9 139 81-270 13-153 (447)
205 KOG2110 Uncharacterized conser 99.4 2.2E-09 4.7E-14 113.6 31.8 196 34-282 4-206 (391)
206 PRK01742 tolB translocation pr 99.3 8.1E-11 1.8E-15 138.6 23.8 174 56-281 183-362 (429)
207 KOG1524 WD40 repeat-containing 99.3 2E-10 4.4E-15 125.6 23.4 170 48-269 76-245 (737)
208 KOG0649 WD40 repeat protein [G 99.3 2.4E-10 5.1E-15 113.7 21.4 176 490-706 17-192 (325)
209 KOG1310 WD40 repeat protein [G 99.3 2.2E-10 4.8E-15 125.7 22.5 235 31-283 46-306 (758)
210 PRK01742 tolB translocation pr 99.3 2.1E-10 4.6E-15 135.1 22.4 195 32-280 200-401 (429)
211 KOG2111 Uncharacterized conser 99.3 7.6E-09 1.6E-13 107.5 30.4 131 488-629 186-318 (346)
212 KOG1523 Actin-related protein 99.3 4.1E-10 8.8E-15 116.7 20.7 162 76-279 10-175 (361)
213 PF04762 IKI3: IKI3 family; I 99.3 4.2E-06 9.2E-11 105.8 59.3 477 36-636 22-567 (928)
214 KOG1334 WD40 repeat protein [G 99.2 1.3E-10 2.8E-15 126.3 16.3 218 32-279 139-365 (559)
215 KOG1334 WD40 repeat protein [G 99.2 1E-10 2.2E-15 127.1 14.7 125 71-210 137-265 (559)
216 KOG1240 Protein kinase contain 99.2 1.8E-09 3.9E-14 129.3 26.3 210 29-283 1042-1276(1431)
217 PRK03629 tolB translocation pr 99.2 9.5E-09 2.1E-13 120.8 29.8 174 58-280 180-363 (429)
218 PRK03629 tolB translocation pr 99.2 5.2E-09 1.1E-13 123.0 25.5 198 34-281 197-407 (429)
219 KOG2139 WD40 repeat protein [G 99.2 1.3E-08 2.9E-13 107.0 25.1 166 76-280 98-268 (445)
220 KOG2321 WD40 repeat protein [G 99.2 3.6E-09 7.8E-14 117.3 21.9 281 28-381 44-326 (703)
221 PF02239 Cytochrom_D1: Cytochr 99.1 7.5E-08 1.6E-12 109.9 32.5 192 48-282 6-204 (369)
222 KOG2110 Uncharacterized conser 99.1 6.5E-09 1.4E-13 110.1 21.0 191 40-282 51-250 (391)
223 PRK04922 tolB translocation pr 99.1 5.7E-09 1.2E-13 123.2 23.5 198 34-281 202-412 (433)
224 PRK05137 tolB translocation pr 99.1 2.7E-08 5.8E-13 117.7 29.0 177 57-282 182-368 (435)
225 PRK05137 tolB translocation pr 99.1 1.1E-08 2.3E-13 121.1 25.1 200 33-282 199-414 (435)
226 PRK02889 tolB translocation pr 99.1 2.5E-08 5.5E-13 117.3 26.4 177 57-282 176-362 (427)
227 KOG0974 WD-repeat protein WDR6 99.1 3.6E-07 7.7E-12 109.0 34.1 193 41-283 93-291 (967)
228 KOG2394 WD40 protein DMR-N9 [G 99.0 1.5E-09 3.2E-14 119.5 12.2 102 25-127 281-384 (636)
229 PRK02889 tolB translocation pr 99.0 2.1E-08 4.6E-13 117.9 22.5 190 33-272 193-392 (427)
230 KOG1912 WD40 repeat protein [G 99.0 1.7E-07 3.7E-12 107.5 28.1 156 78-281 17-187 (1062)
231 PF10282 Lactonase: Lactonase, 99.0 1.2E-05 2.7E-10 91.8 43.0 149 98-281 13-175 (345)
232 KOG1272 WD40-repeat-containing 99.0 2.5E-09 5.4E-14 115.8 10.7 195 37-283 131-326 (545)
233 PF02239 Cytochrom_D1: Cytochr 98.9 7.7E-07 1.7E-11 101.6 30.8 106 90-215 8-115 (369)
234 KOG2111 Uncharacterized conser 98.9 1.1E-07 2.4E-12 99.1 21.1 178 57-283 75-259 (346)
235 PRK04922 tolB translocation pr 98.9 1.3E-07 2.7E-12 111.8 24.6 175 57-282 184-370 (433)
236 PF08662 eIF2A: Eukaryotic tra 98.9 8.4E-08 1.8E-12 99.4 20.0 152 39-213 9-184 (194)
237 PF08662 eIF2A: Eukaryotic tra 98.9 2.5E-08 5.4E-13 103.3 16.1 109 36-147 60-179 (194)
238 KOG2041 WD40 repeat protein [G 98.9 2.9E-06 6.4E-11 96.5 32.8 215 30-282 7-249 (1189)
239 COG5354 Uncharacterized protei 98.9 7.3E-07 1.6E-11 98.4 27.4 161 34-213 31-215 (561)
240 KOG2041 WD40 repeat protein [G 98.9 7.5E-06 1.6E-10 93.3 35.9 123 117-281 14-146 (1189)
241 PF04762 IKI3: IKI3 family; I 98.9 1.3E-05 2.7E-10 101.6 42.3 154 490-699 216-378 (928)
242 KOG2139 WD40 repeat protein [G 98.9 6.8E-08 1.5E-12 101.8 17.9 193 36-280 99-309 (445)
243 KOG0974 WD-repeat protein WDR6 98.9 8.2E-06 1.8E-10 97.8 36.9 149 41-210 139-290 (967)
244 TIGR02800 propeller_TolB tol-p 98.9 4.6E-07 9.9E-12 107.1 27.1 177 57-282 170-356 (417)
245 KOG2321 WD40 repeat protein [G 98.9 5.2E-08 1.1E-12 108.3 17.3 201 34-282 132-345 (703)
246 TIGR02800 propeller_TolB tol-p 98.9 1.6E-07 3.6E-12 110.9 23.2 189 34-272 188-386 (417)
247 KOG3881 Uncharacterized conser 98.9 4.9E-08 1.1E-12 104.2 15.5 165 492-708 158-328 (412)
248 KOG1272 WD40-repeat-containing 98.9 2.9E-09 6.4E-14 115.3 6.2 163 28-211 163-326 (545)
249 KOG1409 Uncharacterized conser 98.8 1.2E-07 2.5E-12 99.7 16.5 205 28-282 61-272 (404)
250 KOG1310 WD40 repeat protein [G 98.8 5.6E-08 1.2E-12 107.3 14.7 181 71-280 45-231 (758)
251 PRK04792 tolB translocation pr 98.8 5.1E-07 1.1E-11 106.6 23.7 161 35-213 217-387 (448)
252 PRK00178 tolB translocation pr 98.8 8E-07 1.7E-11 105.3 25.2 163 34-214 197-369 (430)
253 KOG2315 Predicted translation 98.8 1.6E-05 3.5E-10 89.3 31.9 144 49-215 4-161 (566)
254 KOG3881 Uncharacterized conser 98.8 3.5E-07 7.6E-12 97.8 18.1 186 47-282 115-322 (412)
255 PRK00178 tolB translocation pr 98.7 2.1E-06 4.6E-11 101.7 26.7 176 58-282 180-365 (430)
256 PRK01029 tolB translocation pr 98.7 1.3E-06 2.9E-11 102.4 24.1 197 37-282 186-405 (428)
257 TIGR03300 assembly_YfgL outer 98.7 3.3E-05 7.1E-10 89.9 34.6 213 26-282 40-261 (377)
258 KOG2314 Translation initiation 98.7 6.3E-06 1.4E-10 91.8 25.2 104 39-145 214-332 (698)
259 PF10282 Lactonase: Lactonase, 98.7 4.1E-05 9E-10 87.5 33.3 211 33-280 34-275 (345)
260 KOG1064 RAVE (regulator of V-A 98.7 6.7E-08 1.5E-12 119.8 10.6 157 490-708 2215-2374(2439)
261 PRK04792 tolB translocation pr 98.7 1.8E-06 4E-11 102.0 22.6 176 58-282 199-384 (448)
262 TIGR03300 assembly_YfgL outer 98.7 4.5E-05 9.7E-10 88.7 33.9 108 88-217 65-172 (377)
263 KOG1409 Uncharacterized conser 98.6 5.6E-07 1.2E-11 94.6 15.2 116 71-201 19-137 (404)
264 COG2706 3-carboxymuconate cycl 98.6 0.00026 5.6E-09 76.2 35.2 148 97-280 15-175 (346)
265 COG4946 Uncharacterized protei 98.6 0.00011 2.4E-09 80.6 30.6 150 46-216 331-485 (668)
266 KOG3914 WD repeat protein WDR4 98.6 3.9E-07 8.5E-12 98.1 11.9 158 38-214 65-229 (390)
267 KOG4547 WD40 repeat-containing 98.6 6.8E-06 1.5E-10 92.9 21.9 128 493-659 68-195 (541)
268 COG2706 3-carboxymuconate cycl 98.5 0.00018 4E-09 77.3 30.6 263 30-353 34-325 (346)
269 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00038 8.3E-09 77.9 34.5 105 98-215 27-143 (352)
270 KOG3914 WD repeat protein WDR4 98.5 1E-06 2.2E-11 95.0 13.5 161 490-708 69-231 (390)
271 KOG1354 Serine/threonine prote 98.5 1.8E-06 3.8E-11 90.8 14.6 220 37-282 27-303 (433)
272 KOG4547 WD40 repeat-containing 98.5 8.5E-06 1.8E-10 92.2 20.2 186 44-281 2-221 (541)
273 KOG1064 RAVE (regulator of V-A 98.5 6.7E-07 1.4E-11 111.3 11.5 193 37-289 2210-2407(2439)
274 PLN02919 haloacid dehalogenase 98.4 0.0004 8.6E-09 90.0 36.6 232 27-282 493-772 (1057)
275 COG4946 Uncharacterized protei 98.4 0.0058 1.3E-07 67.6 41.3 147 494-705 331-482 (668)
276 PLN02919 haloacid dehalogenase 98.4 7E-05 1.5E-09 96.9 27.9 227 37-283 625-891 (1057)
277 KOG1354 Serine/threonine prote 98.4 1.2E-05 2.6E-10 84.8 16.7 118 496-638 227-364 (433)
278 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00027 5.9E-09 79.1 26.7 204 43-285 53-335 (352)
279 PRK04043 tolB translocation pr 98.3 0.00014 3.1E-09 84.8 24.1 158 37-214 189-363 (419)
280 KOG2066 Vacuolar assembly/sort 98.2 1.7E-05 3.7E-10 92.6 15.6 189 36-280 40-233 (846)
281 PF15492 Nbas_N: Neuroblastoma 98.2 0.00016 3.5E-09 75.5 20.8 99 39-137 47-167 (282)
282 PF11768 DUF3312: Protein of u 98.2 0.0086 1.9E-07 69.0 36.0 115 508-657 239-366 (545)
283 KOG4532 WD40-like repeat conta 98.2 5.3E-05 1.1E-09 77.5 16.0 151 498-703 131-285 (344)
284 KOG3617 WD40 and TPR repeat-co 98.2 0.00062 1.3E-08 79.7 25.6 110 38-148 18-132 (1416)
285 PRK01029 tolB translocation pr 98.2 0.00014 3E-09 85.5 21.2 164 35-216 230-411 (428)
286 PRK04043 tolB translocation pr 98.1 0.001 2.3E-08 77.6 28.0 139 57-214 169-315 (419)
287 COG5170 CDC55 Serine/threonine 98.1 2.1E-05 4.5E-10 81.6 11.7 222 36-283 27-312 (460)
288 COG5354 Uncharacterized protei 98.1 0.0015 3.2E-08 73.0 26.7 77 534-638 272-353 (561)
289 PF00400 WD40: WD domain, G-be 98.1 8.6E-06 1.9E-10 60.0 6.7 38 594-631 2-39 (39)
290 KOG4714 Nucleoporin [Nuclear s 98.1 3.6E-05 7.8E-10 78.4 12.9 151 41-211 95-257 (319)
291 PRK11138 outer membrane biogen 98.1 0.006 1.3E-07 71.3 33.7 109 88-217 69-187 (394)
292 KOG0280 Uncharacterized conser 98.1 0.00039 8.4E-09 72.4 20.2 201 37-283 16-244 (339)
293 KOG2114 Vacuolar assembly/sort 98.1 0.00016 3.4E-09 85.3 18.7 156 41-211 29-204 (933)
294 KOG2314 Translation initiation 98.1 0.0013 2.8E-08 74.0 24.7 114 78-210 212-336 (698)
295 PF00957 Synaptobrevin: Synapt 98.1 6.7E-06 1.5E-10 73.2 5.8 49 1052-1100 14-62 (89)
296 KOG0860 Synaptobrevin/VAMP-lik 98.0 5.4E-06 1.2E-10 74.0 4.6 51 1052-1106 40-90 (116)
297 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.014 2.9E-07 60.2 28.6 107 89-215 24-130 (354)
298 KOG2315 Predicted translation 98.0 0.00047 1E-08 77.9 20.1 194 35-282 165-392 (566)
299 KOG4190 Uncharacterized conser 98.0 2.3E-05 4.9E-10 86.8 9.2 177 481-708 733-914 (1034)
300 KOG2695 WD40 repeat protein [G 98.0 2.8E-05 6.1E-10 82.1 9.3 154 502-709 231-385 (425)
301 KOG3621 WD40 repeat-containing 97.9 0.00013 2.8E-09 84.4 14.4 143 484-657 34-179 (726)
302 KOG4714 Nucleoporin [Nuclear s 97.9 2.7E-05 5.9E-10 79.3 7.9 157 487-701 93-255 (319)
303 PRK11138 outer membrane biogen 97.9 0.018 3.8E-07 67.4 33.0 173 23-216 41-231 (394)
304 KOG3621 WD40 repeat-containing 97.9 9.7E-05 2.1E-09 85.4 12.3 115 34-148 32-155 (726)
305 KOG1920 IkappaB kinase complex 97.9 0.045 9.7E-07 67.9 35.0 213 37-282 20-276 (1265)
306 KOG4190 Uncharacterized conser 97.8 3.1E-05 6.8E-10 85.7 7.4 210 25-282 725-950 (1034)
307 KOG0280 Uncharacterized conser 97.8 0.00034 7.5E-09 72.8 14.0 155 38-210 124-286 (339)
308 PF11768 DUF3312: Protein of u 97.8 0.0024 5.3E-08 73.4 21.5 107 177-317 260-367 (545)
309 KOG1645 RING-finger-containing 97.8 0.0021 4.5E-08 69.9 19.4 78 177-285 194-271 (463)
310 PF00400 WD40: WD domain, G-be 97.7 8.2E-05 1.8E-09 54.7 5.5 36 69-104 4-39 (39)
311 PF03178 CPSF_A: CPSF A subuni 97.7 0.0046 9.9E-08 70.1 22.5 144 47-209 42-203 (321)
312 PF13360 PQQ_2: PQQ-like domai 97.7 0.0048 1E-07 66.5 21.7 194 45-283 34-233 (238)
313 KOG1645 RING-finger-containing 97.7 0.0025 5.5E-08 69.2 18.6 84 71-154 188-273 (463)
314 KOG4532 WD40-like repeat conta 97.7 0.0024 5.2E-08 65.7 17.2 154 49-214 130-288 (344)
315 PF15492 Nbas_N: Neuroblastoma 97.6 0.0038 8.2E-08 65.5 18.5 189 490-705 50-264 (282)
316 COG5170 CDC55 Serine/threonine 97.6 0.0016 3.5E-08 68.0 14.8 96 117-212 26-121 (460)
317 PF08450 SGL: SMP-30/Gluconola 97.6 0.047 1E-06 59.1 27.4 185 38-269 42-244 (246)
318 KOG2695 WD40 repeat protein [G 97.5 0.00037 8E-09 74.0 9.6 146 55-216 232-384 (425)
319 KOG0882 Cyclophilin-related pe 97.5 0.00078 1.7E-08 73.9 11.6 215 33-286 7-237 (558)
320 KOG0309 Conserved WD40 repeat- 97.5 0.00055 1.2E-08 79.1 10.9 123 27-149 106-234 (1081)
321 KOG3617 WD40 and TPR repeat-co 97.5 0.0062 1.3E-07 71.7 18.6 112 120-282 18-133 (1416)
322 KOG1832 HIV-1 Vpr-binding prot 97.4 0.0001 2.3E-09 86.3 4.1 161 33-216 1099-1263(1516)
323 PF08450 SGL: SMP-30/Gluconola 97.4 0.061 1.3E-06 58.3 25.4 192 39-280 3-213 (246)
324 PF07433 DUF1513: Protein of u 97.4 0.068 1.5E-06 58.1 24.2 103 34-136 3-117 (305)
325 PF08596 Lgl_C: Lethal giant l 97.3 0.048 1.1E-06 62.8 23.3 206 37-283 3-293 (395)
326 KOG1920 IkappaB kinase complex 97.3 0.052 1.1E-06 67.3 24.2 201 36-283 69-325 (1265)
327 KOG0309 Conserved WD40 repeat- 97.2 0.0025 5.4E-08 73.9 12.3 159 35-210 67-234 (1081)
328 PF00780 CNH: CNH domain; Int 97.2 0.096 2.1E-06 57.8 24.5 160 492-704 4-169 (275)
329 KOG0882 Cyclophilin-related pe 97.2 0.0099 2.1E-07 65.6 15.6 145 493-638 154-310 (558)
330 KOG2066 Vacuolar assembly/sort 97.2 0.014 2.9E-07 69.2 17.5 139 495-708 49-195 (846)
331 PF06977 SdiA-regulated: SdiA- 97.2 0.11 2.5E-06 55.5 23.2 175 30-214 16-206 (248)
332 PF13360 PQQ_2: PQQ-like domai 97.2 0.034 7.4E-07 59.8 19.9 145 56-216 2-148 (238)
333 KOG1275 PAB-dependent poly(A) 97.1 0.0093 2E-07 71.2 15.0 181 46-278 146-340 (1118)
334 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.03 6.6E-07 50.8 14.2 100 38-142 2-109 (111)
335 PRK02888 nitrous-oxide reducta 97.0 0.026 5.6E-07 66.8 17.6 155 43-209 200-405 (635)
336 PF04841 Vps16_N: Vps16, N-ter 97.0 0.17 3.7E-06 59.0 24.5 68 41-109 34-112 (410)
337 KOG4640 Anaphase-promoting com 96.9 0.0034 7.4E-08 72.2 9.4 93 537-657 21-114 (665)
338 KOG2079 Vacuolar assembly/sort 96.9 0.013 2.8E-07 71.5 14.1 93 538-657 89-181 (1206)
339 PF07433 DUF1513: Protein of u 96.9 0.2 4.4E-06 54.5 21.9 176 490-709 57-256 (305)
340 KOG1897 Damage-specific DNA bi 96.8 2.2 4.7E-05 52.6 44.3 139 57-211 470-616 (1096)
341 PF06433 Me-amine-dh_H: Methyl 96.8 1.2 2.6E-05 49.3 27.3 58 626-708 270-328 (342)
342 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.87 1.9E-05 47.4 30.0 101 47-148 23-124 (354)
343 PF00780 CNH: CNH domain; Int 96.7 0.05 1.1E-06 60.0 17.1 150 44-216 4-173 (275)
344 PF00930 DPPIV_N: Dipeptidyl p 96.7 0.37 7.9E-06 55.3 24.2 101 44-145 1-129 (353)
345 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0056 1.2E-07 46.6 5.9 43 26-68 2-44 (47)
346 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.097 2.1E-06 47.7 14.8 102 79-203 2-109 (111)
347 KOG0859 Synaptobrevin/VAMP-lik 96.6 0.0012 2.6E-08 64.5 2.4 65 1035-1106 122-186 (217)
348 COG3204 Uncharacterized protei 96.6 0.26 5.7E-06 52.4 19.3 179 75-282 84-265 (316)
349 PF14727 PHTB1_N: PTHB1 N-term 96.5 2.3 4.9E-05 49.2 30.2 287 493-899 35-365 (418)
350 PF06977 SdiA-regulated: SdiA- 96.5 0.24 5.2E-06 53.1 19.5 172 76-280 21-201 (248)
351 KOG4640 Anaphase-promoting com 96.5 0.01 2.3E-07 68.4 9.5 94 33-126 18-114 (665)
352 smart00320 WD40 WD40 repeats. 96.5 0.0079 1.7E-07 42.6 5.9 37 595-631 4-40 (40)
353 cd00216 PQQ_DH Dehydrogenases 96.5 1.9 4.2E-05 51.7 29.6 69 623-708 364-432 (488)
354 KOG1275 PAB-dependent poly(A) 96.5 0.03 6.5E-07 67.1 13.3 151 37-206 179-340 (1118)
355 KOG1897 Damage-specific DNA bi 96.4 3.8 8.3E-05 50.6 57.5 121 538-704 489-619 (1096)
356 COG0823 TolB Periplasmic compo 96.3 0.069 1.5E-06 62.1 15.3 154 40-211 197-361 (425)
357 KOG2079 Vacuolar assembly/sort 96.2 0.12 2.5E-06 63.6 16.4 100 46-147 98-203 (1206)
358 KOG1008 Uncharacterized conser 96.0 0.0021 4.5E-08 73.8 0.7 198 38-281 59-276 (783)
359 PF08553 VID27: VID27 cytoplas 95.9 0.88 1.9E-05 56.4 22.2 149 492-700 490-647 (794)
360 PF08553 VID27: VID27 cytoplas 95.9 0.17 3.8E-06 62.3 16.2 139 95-280 501-647 (794)
361 PF04053 Coatomer_WDAD: Coatom 95.9 0.37 8.1E-06 56.4 18.2 57 90-148 118-174 (443)
362 KOG1832 HIV-1 Vpr-binding prot 95.8 0.0046 1E-07 73.1 2.5 126 474-638 1092-1219(1516)
363 cd00216 PQQ_DH Dehydrogenases 95.7 6.8 0.00015 47.1 31.3 115 88-217 61-192 (488)
364 PF03178 CPSF_A: CPSF A subuni 95.6 0.74 1.6E-05 52.1 19.4 122 24-148 77-203 (321)
365 PF04053 Coatomer_WDAD: Coatom 95.6 0.11 2.5E-06 60.6 12.7 142 36-209 33-174 (443)
366 KOG2114 Vacuolar assembly/sort 95.6 0.3 6.5E-06 58.8 15.9 112 35-147 125-243 (933)
367 COG0823 TolB Periplasmic compo 95.6 0.36 7.9E-06 56.3 16.7 122 74-213 190-319 (425)
368 PRK13616 lipoprotein LpqB; Pro 95.4 0.54 1.2E-05 57.3 18.0 153 36-207 350-524 (591)
369 smart00320 WD40 WD40 repeats. 95.2 0.036 7.9E-07 38.9 4.6 33 72-104 8-40 (40)
370 PF04841 Vps16_N: Vps16, N-ter 94.9 4.2 9.1E-05 47.5 23.0 40 596-636 73-112 (410)
371 PF12894 Apc4_WD40: Anaphase-p 94.9 0.069 1.5E-06 40.7 5.3 35 601-635 9-43 (47)
372 COG3391 Uncharacterized conser 94.9 4.6 0.0001 46.8 23.1 203 36-282 74-285 (381)
373 COG3386 Gluconolactonase [Carb 94.6 2.5 5.5E-05 46.9 19.1 194 32-270 62-275 (307)
374 PF05096 Glu_cyclase_2: Glutam 94.6 4.2 9.2E-05 43.5 19.6 176 22-216 29-211 (264)
375 COG3391 Uncharacterized conser 94.6 5.7 0.00012 46.0 22.8 160 37-214 32-196 (381)
376 KOG2444 WD40 repeat protein [G 94.6 0.078 1.7E-06 54.2 6.4 109 91-218 33-142 (238)
377 PF06433 Me-amine-dh_H: Methyl 94.5 5.1 0.00011 44.5 20.4 203 40-283 99-323 (342)
378 KOG1008 Uncharacterized conser 94.5 0.012 2.6E-07 67.8 0.4 163 33-209 100-276 (783)
379 KOG2395 Protein involved in va 94.3 2.7 5.9E-05 48.3 18.2 141 497-699 348-499 (644)
380 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.1 18 0.00039 43.9 31.9 113 88-216 69-197 (527)
381 PF10647 Gmad1: Lipoprotein Lp 94.0 2.9 6.4E-05 45.3 17.6 149 37-200 25-187 (253)
382 KOG3630 Nuclear pore complex, 93.9 0.54 1.2E-05 58.3 12.6 151 40-209 46-229 (1405)
383 PF14761 HPS3_N: Hermansky-Pud 93.8 4.9 0.00011 41.4 17.4 124 502-637 35-167 (215)
384 PF10395 Utp8: Utp8 family; I 93.8 8.7 0.00019 46.6 22.0 114 540-700 31-159 (670)
385 KOG4499 Ca2+-binding protein R 93.7 4 8.7E-05 42.1 16.3 53 188-269 221-273 (310)
386 PRK13616 lipoprotein LpqB; Pro 93.5 2.5 5.5E-05 51.5 17.8 185 56-280 328-525 (591)
387 COG3204 Uncharacterized protei 93.4 7.4 0.00016 41.9 18.4 180 23-211 71-266 (316)
388 KOG2395 Protein involved in va 93.4 2 4.3E-05 49.3 15.0 200 34-280 275-500 (644)
389 PF14781 BBS2_N: Ciliary BBSom 93.3 3.6 7.7E-05 39.0 14.1 114 38-154 1-130 (136)
390 KOG2444 WD40 repeat protein [G 93.2 0.26 5.6E-06 50.5 7.1 103 46-148 69-178 (238)
391 PF02897 Peptidase_S9_N: Proly 92.7 22 0.00047 41.7 23.9 114 37-150 125-261 (414)
392 PF14655 RAB3GAP2_N: Rab3 GTPa 92.3 1.1 2.4E-05 51.7 11.6 126 541-701 6-147 (415)
393 PRK02888 nitrous-oxide reducta 92.1 1.6 3.5E-05 52.2 12.9 92 57-148 296-405 (635)
394 PF10647 Gmad1: Lipoprotein Lp 92.1 10 0.00022 41.1 18.4 112 78-206 25-142 (253)
395 COG3386 Gluconolactonase [Carb 91.9 5.2 0.00011 44.5 16.0 103 533-657 159-263 (307)
396 PF14870 PSII_BNR: Photosynthe 91.5 10 0.00022 42.1 17.5 146 488-697 149-301 (302)
397 COG3490 Uncharacterized protei 91.1 7 0.00015 41.6 14.7 54 42-95 120-180 (366)
398 PF10168 Nup88: Nuclear pore c 90.9 10 0.00022 47.3 18.6 122 503-637 40-183 (717)
399 PF10979 DUF2786: Protein of u 90.7 0.16 3.6E-06 37.7 1.8 39 1062-1100 1-39 (43)
400 PF10168 Nup88: Nuclear pore c 90.5 9.4 0.0002 47.6 17.9 73 36-108 85-181 (717)
401 PF15390 DUF4613: Domain of un 90.3 4.8 0.0001 47.2 13.8 154 78-280 21-186 (671)
402 PF14727 PHTB1_N: PTHB1 N-term 90.2 42 0.00092 39.0 28.1 39 47-85 37-80 (418)
403 PF14583 Pectate_lyase22: Olig 90.2 34 0.00075 38.9 20.2 76 42-117 42-121 (386)
404 PF08728 CRT10: CRT10; InterP 89.6 18 0.00038 44.5 18.6 158 33-208 38-246 (717)
405 COG3490 Uncharacterized protei 89.0 7 0.00015 41.7 12.7 57 543-623 120-181 (366)
406 PF08728 CRT10: CRT10; InterP 88.8 6.5 0.00014 48.1 14.2 185 488-699 43-245 (717)
407 PF15390 DUF4613: Domain of un 87.9 66 0.0014 38.3 23.8 115 496-638 74-191 (671)
408 PHA02713 hypothetical protein; 87.8 5.3 0.00011 48.8 13.1 57 491-558 348-409 (557)
409 PF14781 BBS2_N: Ciliary BBSom 87.5 18 0.00039 34.4 13.2 119 541-701 3-126 (136)
410 PF02897 Peptidase_S9_N: Proly 87.3 67 0.0014 37.6 27.0 112 489-635 129-262 (414)
411 KOG3630 Nuclear pore complex, 87.2 2.5 5.5E-05 52.8 9.4 148 37-201 102-265 (1405)
412 PF10313 DUF2415: Uncharacteri 86.4 2.5 5.4E-05 31.4 5.5 32 604-635 1-35 (43)
413 PF07569 Hira: TUP1-like enhan 86.4 3.4 7.3E-05 43.6 9.0 64 84-148 18-96 (219)
414 TIGR03074 PQQ_membr_DH membran 86.0 1.1E+02 0.0024 38.8 40.8 122 88-217 194-353 (764)
415 KOG1896 mRNA cleavage and poly 85.7 8.6 0.00019 48.7 12.9 146 47-209 1046-1214(1366)
416 PF14761 HPS3_N: Hermansky-Pud 85.5 13 0.00027 38.5 12.1 117 89-212 29-167 (215)
417 KOG2280 Vacuolar assembly/sort 85.4 10 0.00023 45.7 12.9 82 472-569 24-115 (829)
418 PRK13684 Ycf48-like protein; P 85.0 29 0.00063 39.4 16.3 117 536-700 214-331 (334)
419 PF13449 Phytase-like: Esteras 84.9 44 0.00095 37.8 17.7 115 35-150 19-193 (326)
420 PLN00033 photosystem II stabil 84.8 45 0.00097 38.7 17.8 147 38-205 241-396 (398)
421 PF08366 LLGL: LLGL2; InterPr 84.7 10 0.00023 34.4 9.8 67 327-405 29-99 (105)
422 KOG1916 Nuclear protein, conta 84.6 2.5 5.3E-05 51.5 7.4 132 505-657 153-292 (1283)
423 TIGR02604 Piru_Ver_Nterm putat 84.1 26 0.00057 40.3 15.8 95 36-132 14-138 (367)
424 PF05096 Glu_cyclase_2: Glutam 83.9 67 0.0015 34.6 19.2 153 491-706 52-209 (264)
425 PRK13684 Ycf48-like protein; P 83.4 40 0.00086 38.2 16.6 154 33-207 170-330 (334)
426 PF14583 Pectate_lyase22: Olig 83.4 90 0.0019 35.7 26.5 110 66-192 20-138 (386)
427 KOG4499 Ca2+-binding protein R 82.8 63 0.0014 33.8 15.4 101 540-657 161-262 (310)
428 KOG4460 Nuclear pore complex, 82.6 23 0.0005 41.0 13.5 91 119-215 105-205 (741)
429 PF07569 Hira: TUP1-like enhan 82.6 6.9 0.00015 41.3 9.3 66 42-108 17-97 (219)
430 PF11715 Nup160: Nucleoporin N 82.5 5.5 0.00012 48.7 9.9 71 45-115 156-257 (547)
431 PF12234 Rav1p_C: RAVE protein 81.9 19 0.00041 43.8 13.6 74 30-104 25-102 (631)
432 PF12768 Rax2: Cortical protei 81.3 51 0.0011 36.2 15.6 120 506-659 17-147 (281)
433 PF00930 DPPIV_N: Dipeptidyl p 81.3 1.1E+02 0.0023 35.1 20.8 78 78-155 185-274 (353)
434 KOG2280 Vacuolar assembly/sort 81.2 1.2E+02 0.0026 37.3 19.2 75 602-701 82-156 (829)
435 KOG4441 Proteins containing BT 81.1 25 0.00054 43.1 14.6 110 492-638 378-504 (571)
436 TIGR03075 PQQ_enz_alc_DH PQQ-d 80.5 23 0.0005 42.9 14.0 125 29-155 294-496 (527)
437 PF14870 PSII_BNR: Photosynthe 80.4 1E+02 0.0022 34.3 20.2 159 73-277 141-301 (302)
438 PHA02713 hypothetical protein; 80.0 55 0.0012 40.1 17.2 24 260-283 511-536 (557)
439 PF14655 RAB3GAP2_N: Rab3 GTPa 79.9 15 0.00033 42.5 11.5 108 595-708 299-406 (415)
440 TIGR03118 PEPCTERM_chp_1 conse 79.8 1E+02 0.0022 33.9 20.2 120 19-145 13-168 (336)
441 PF12657 TFIIIC_delta: Transcr 79.5 6 0.00013 40.1 7.4 77 606-700 7-121 (173)
442 PF12234 Rav1p_C: RAVE protein 79.2 1.1E+02 0.0023 37.6 18.6 76 603-700 29-104 (631)
443 PRK10115 protease 2; Provision 78.4 1.9E+02 0.0042 36.4 25.3 110 36-146 127-254 (686)
444 PF12768 Rax2: Cortical protei 78.3 35 0.00077 37.4 13.2 123 556-725 14-146 (281)
445 PF05694 SBP56: 56kDa selenium 77.5 46 0.001 38.3 13.9 172 33-210 130-344 (461)
446 KOG1898 Splicing factor 3b, su 77.3 57 0.0012 41.3 15.5 145 38-204 880-1044(1205)
447 PHA02790 Kelch-like protein; P 77.2 49 0.0011 39.7 15.4 65 492-567 316-385 (480)
448 PF11635 Med16: Mediator compl 76.8 2.2E+02 0.0049 36.2 22.5 103 537-639 181-295 (753)
449 KOG4441 Proteins containing BT 75.8 92 0.002 38.2 17.3 150 48-214 334-505 (571)
450 PF10313 DUF2415: Uncharacteri 75.8 7 0.00015 29.1 4.6 30 36-65 1-33 (43)
451 PHA03098 kelch-like protein; P 74.8 46 0.001 40.5 14.7 65 493-568 341-416 (534)
452 PHA03098 kelch-like protein; P 73.2 1.1E+02 0.0023 37.3 17.4 24 87-110 342-370 (534)
453 smart00036 CNH Domain found in 72.5 1.1E+02 0.0025 34.0 15.8 62 44-106 10-73 (302)
454 KOG1983 Tomosyn and related SN 72.0 75 0.0016 41.6 15.9 33 115-147 33-65 (993)
455 PF02333 Phytase: Phytase; In 71.8 1.9E+02 0.0042 33.1 18.5 181 17-210 78-292 (381)
456 TIGR03074 PQQ_membr_DH membran 71.4 2.9E+02 0.0063 35.1 23.5 72 47-118 194-290 (764)
457 PF01011 PQQ: PQQ enzyme repea 70.6 6.6 0.00014 28.3 3.6 23 684-706 2-24 (38)
458 PF05935 Arylsulfotrans: Aryls 69.5 1.4E+02 0.0031 35.7 16.6 157 55-218 126-311 (477)
459 TIGR03118 PEPCTERM_chp_1 conse 69.3 1.8E+02 0.004 31.9 15.7 162 36-213 77-284 (336)
460 KOG4460 Nuclear pore complex, 67.6 74 0.0016 37.1 12.5 91 537-643 104-208 (741)
461 PF14779 BBS1: Ciliary BBSome 67.6 36 0.00078 36.5 9.7 74 602-697 175-255 (257)
462 PF13449 Phytase-like: Esteras 67.3 2.2E+02 0.0048 32.1 17.8 119 76-199 19-167 (326)
463 KOG1916 Nuclear protein, conta 66.7 5.3 0.00011 48.8 3.6 65 41-105 189-264 (1283)
464 smart00564 PQQ beta-propeller 66.7 8.2 0.00018 26.5 3.3 24 682-705 6-29 (33)
465 PLN00033 photosystem II stabil 62.3 3E+02 0.0066 32.0 22.4 110 81-205 243-353 (398)
466 TIGR02604 Piru_Ver_Nterm putat 61.7 1.9E+02 0.0042 33.2 15.4 59 78-138 15-90 (367)
467 TIGR02276 beta_rpt_yvtn 40-res 60.9 32 0.00068 25.0 5.8 39 86-124 1-40 (42)
468 PF07995 GSDH: Glucose / Sorbo 60.7 2.9E+02 0.0063 31.2 27.5 61 494-561 270-330 (331)
469 COG5167 VID27 Protein involved 60.3 21 0.00045 41.2 6.5 59 46-105 572-631 (776)
470 KOG1900 Nuclear pore complex, 60.1 84 0.0018 41.0 12.4 161 45-210 89-274 (1311)
471 COG5167 VID27 Protein involved 59.8 3.3E+02 0.0071 32.0 15.6 145 84-280 475-632 (776)
472 COG5276 Uncharacterized conser 59.4 2.7E+02 0.0059 30.4 18.9 168 27-218 36-209 (370)
473 KOG3616 Selective LIM binding 58.8 1.2E+02 0.0027 36.7 12.5 70 35-106 14-83 (1636)
474 PF12341 DUF3639: Protein of u 58.6 20 0.00044 23.8 3.7 25 37-63 3-27 (27)
475 PF11715 Nup160: Nucleoporin N 57.5 28 0.0006 42.7 7.9 28 681-708 229-256 (547)
476 KOG2063 Vacuolar assembly/sort 56.8 1.1E+02 0.0025 38.8 12.7 70 41-111 20-101 (877)
477 PF07995 GSDH: Glucose / Sorbo 56.8 1.2E+02 0.0026 34.3 12.3 50 37-87 3-59 (331)
478 COG5143 SNC1 Synaptobrevin/VAM 56.5 19 0.0004 36.4 4.9 51 1052-1106 140-190 (190)
479 PHA02790 Kelch-like protein; P 56.4 4.2E+02 0.0091 31.7 17.8 93 46-139 271-373 (480)
480 KOG2377 Uncharacterized conser 54.8 2.3E+02 0.0051 32.7 13.3 108 39-149 26-142 (657)
481 KOG1900 Nuclear pore complex, 54.4 1.2E+02 0.0026 39.6 12.4 164 502-701 96-273 (1311)
482 KOG0861 SNARE protein YKT6, sy 51.0 19 0.00042 35.3 3.8 40 1055-1094 151-190 (198)
483 KOG2377 Uncharacterized conser 49.7 70 0.0015 36.6 8.4 100 35-136 66-172 (657)
484 PF11635 Med16: Mediator compl 48.5 5.7E+02 0.012 32.7 17.5 34 249-283 259-292 (753)
485 COG4590 ABC-type uncharacteriz 48.1 1E+02 0.0022 35.3 9.3 159 77-281 221-387 (733)
486 PF10214 Rrn6: RNA polymerase 47.2 6.2E+02 0.013 32.4 17.7 134 74-212 77-236 (765)
487 KOG2063 Vacuolar assembly/sort 47.1 3.4E+02 0.0073 34.8 14.6 76 490-568 21-98 (877)
488 PF12657 TFIIIC_delta: Transcr 44.9 85 0.0019 31.7 7.8 32 604-635 86-123 (173)
489 KOG2247 WD40 repeat-containing 43.8 4.5 9.7E-05 46.2 -1.8 114 473-637 79-192 (615)
490 PF13570 PQQ_3: PQQ-like domai 42.8 33 0.00071 24.9 3.3 20 682-701 21-40 (40)
491 PF00957 Synaptobrevin: Synapt 41.5 70 0.0015 28.2 5.8 52 1055-1106 10-64 (89)
492 PF10214 Rrn6: RNA polymerase 39.6 9.3E+02 0.02 30.8 20.2 88 534-632 77-175 (765)
493 PF05694 SBP56: 56kDa selenium 39.6 1.7E+02 0.0036 34.0 9.5 39 603-641 311-353 (461)
494 smart00036 CNH Domain found in 39.1 5.8E+02 0.013 28.3 25.6 59 496-568 14-75 (302)
495 PF05935 Arylsulfotrans: Aryls 39.1 4.5E+02 0.0097 31.5 13.9 25 681-705 282-306 (477)
496 PF10433 MMS1_N: Mono-function 39.0 5E+02 0.011 31.2 14.7 152 38-204 206-385 (504)
497 PF07676 PD40: WD40-like Beta 38.9 92 0.002 22.2 5.1 31 600-630 5-38 (39)
498 PF14779 BBS1: Ciliary BBSome 38.5 1.7E+02 0.0037 31.5 9.0 70 75-144 175-255 (257)
499 COG4575 ElaB Uncharacterized c 38.3 48 0.001 29.9 4.0 57 1022-1089 23-79 (104)
500 TIGR02276 beta_rpt_yvtn 40-res 37.7 1.4E+02 0.003 21.4 6.1 31 613-643 1-32 (42)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-40 Score=370.82 Aligned_cols=544 Identities=13% Similarity=0.176 Sum_probs=385.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-e-eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-L-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~-~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
-+..+++++.+||+.+|.++...+.+++|.++..+++ . ..-|++||.-++|.|.+..|++++.|+.++|||+..+.++
T Consensus 61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred chhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 3456999999999999999999999999999877654 3 3349999999999999999999999999999999999999
Q ss_pred eee-ccCCCeEEEEEecCCC--EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 112 CCL-KWESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 112 ~~~-~~~~~Vt~l~~~~~~~--~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
+.+ +|++.|.++.|.|+-+ .|++|..|+.|++|++......+. ....|. ..|++++|.+
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~----~~~~H~------------S~vtsL~~~~-- 202 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLH----TMILHK------------SAVTSLAFSE-- 202 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHH----HHHhhh------------hheeeeeecc--
Confidence 888 6899999999998864 588999999999999985433222 244554 7899999977
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC-----CC
Q 001287 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-----GS 263 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd-----g~ 263 (1107)
++.-+++++.|..|.|||+.+-+......- ...+.++.+. ++ |.
T Consensus 203 d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~------------------------------ye~~E~vv~l-~~~~~~~~~ 251 (775)
T KOG0319|consen 203 DSLELLSVGRDKVIIVWDLVQYKKLKTLPL------------------------------YESLESVVRL-REELGGKGE 251 (775)
T ss_pred CCceEEEeccCcEEEEeehhhhhhhheech------------------------------hhheeeEEEe-chhcCCcce
Confidence 576799999999999999965443322111 3345555554 45 67
Q ss_pred EEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCce-EEEEeCCCCCCcce
Q 001287 264 ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR-LFVYGGDEIGSEEV 342 (1107)
Q Consensus 264 ~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~-llv~gg~~~~~~~~ 342 (1107)
++++.+.+|.+++||.+++.....+...... . +..+ ......++ ++++..+.
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~-----------e---~~~~-------~~~~~~~~~l~vtaeQn------ 304 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSE-----------E---IDHL-------LAIESMSQLLLVTAEQN------ 304 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCch-----------h---hhcc-------eeccccCceEEEEccce------
Confidence 9999999999999999877533221111000 0 1111 01122223 33333322
Q ss_pred EEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCC
Q 001287 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1107)
Q Consensus 343 ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 422 (1107)
+.++ +.... ...+.-++-+..|.||.+... +...++|.++.+++.+|+.....+.
T Consensus 305 l~l~--d~~~l-----~i~k~ivG~ndEI~Dm~~lG~-------e~~~laVATNs~~lr~y~~~~~~c~----------- 359 (775)
T KOG0319|consen 305 LFLY--DEDEL-----TIVKQIVGYNDEILDMKFLGP-------EESHLAVATNSPELRLYTLPTSYCQ----------- 359 (775)
T ss_pred EEEE--Ecccc-----EEehhhcCCchhheeeeecCC-------ccceEEEEeCCCceEEEecCCCceE-----------
Confidence 2222 11110 011233455668999998775 4457999999999999874433222
Q ss_pred CccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEe
Q 001287 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1107)
Q Consensus 423 ~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs 502 (1107)
+..||.+.+..+.....+.+|+||+
T Consensus 360 -------------------------------------------------------ii~GH~e~vlSL~~~~~g~llat~s 384 (775)
T KOG0319|consen 360 -------------------------------------------------------IIPGHTEAVLSLDVWSSGDLLATGS 384 (775)
T ss_pred -------------------------------------------------------EEeCchhheeeeeecccCcEEEEec
Confidence 2223433333334556667999999
Q ss_pred cCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCC-CeEEEeccCceEEEEEecCCCCCccceeeccCc
Q 001287 503 HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETK 581 (1107)
Q Consensus 503 ~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~-~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~ 581 (1107)
.|.+|++|.+.......... ....+|...|.+++++..+ .+|++++.|+++++|.+...... .++
T Consensus 385 KD~svilWr~~~~~~~~~~~-------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~-~~~------ 450 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSKSLCV-------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET-AFP------ 450 (775)
T ss_pred CCceEEEEEecCCcchhhhh-------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc-ccc------
Confidence 99999999885444321111 1245999999999998765 57999999999999999873211 100
Q ss_pred CcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeeccc
Q 001287 582 SEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKN 661 (1107)
Q Consensus 582 ~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~ 661 (1107)
..+.+..+-..|...|.|++++|+.+++|+||.|.+.+||++++..++ ..++||..+|.++.|+
T Consensus 451 ---------~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~---~vLsGH~RGvw~V~Fs---- 514 (775)
T KOG0319|consen 451 ---------IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL---GVLSGHTRGVWCVSFS---- 514 (775)
T ss_pred ---------ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE---EEeeCCccceEEEEec----
Confidence 001122233569999999999999999999999999999999988887 7889999999999999
Q ss_pred CccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCcccccccccc
Q 001287 662 THSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAE 741 (1107)
Q Consensus 662 ~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 741 (1107)
+.+.+|++++.|.+|++|..++++++.++.-
T Consensus 515 ------------------~~dq~laT~SgD~TvKIW~is~fSClkT~eG------------------------------- 545 (775)
T KOG0319|consen 515 ------------------KNDQLLATCSGDKTVKIWSISTFSCLKTFEG------------------------------- 545 (775)
T ss_pred ------------------cccceeEeccCCceEEEEEeccceeeeeecC-------------------------------
Confidence 4477899999999999999999999877611
Q ss_pred ccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEe-cCeeEEEeccccccccceeeeeecCCCcceeee
Q 001287 742 ENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCC-EDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWAS 820 (1107)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~-e~~l~v~sl~~~~~g~~~~i~k~~~~~~~~~~~ 820 (1107)
|.+.+..+.|-.. +..++.|+ +.-++||+.++ +.|++-..-...-+|+.
T Consensus 546 -----------------------H~~aVlra~F~~~--~~qliS~~adGliKlWnikt-----~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 546 -----------------------HTSAVLRASFIRN--GKQLISAGADGLIKLWNIKT-----NECEMTLDAHNDRVWAL 595 (775)
T ss_pred -----------------------ccceeEeeeeeeC--CcEEEeccCCCcEEEEeccc-----hhhhhhhhhccceeEEE
Confidence 2222222222211 44555555 55999999998 56666655556778886
Q ss_pred eeecCCceeEEEEEeecCcEEEee
Q 001287 821 TIEKDEKVCGLLLLFQTGAVQIRS 844 (1107)
Q Consensus 821 ~~~~~~~~~~l~~~~~~G~i~i~s 844 (1107)
..... ....+++-.||.|-.|-
T Consensus 596 ~~~~~--~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 596 SVSPL--LDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eecCc--cceeEecCCCeEEEEee
Confidence 55542 33566667777777663
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-39 Score=337.54 Aligned_cols=362 Identities=14% Similarity=0.245 Sum_probs=276.9
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecC
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~ 149 (1107)
.+.+|.++|-+++|+|+|.+|++++.|.++++||+.+.....+. .|..-|.|++|+|++++|++|+.||+|++|+-..
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt- 188 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT- 188 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC-
Confidence 56789999999999999999999999999999999999887666 7999999999999999999999999999998554
Q ss_pred CCceeecceeecccccccccCCCCCCCCCeEEEEcccCC---CCCEEEEEECCCeEEEEEccCCEEE-EEeCCccccccc
Q 001287 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS---SGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKD 225 (1107)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~---~~~~ll~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~~~ 225 (1107)
|... .-.+++|. .+|++++|+|-. ...+|++++.||.|+|||+..+.++ ...||
T Consensus 189 -g~~~--g~~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH------- 246 (480)
T KOG0271|consen 189 -GQQI--GRALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH------- 246 (480)
T ss_pred -CCcc--cccccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-------
Confidence 3322 23367777 899999999842 4557999999999999999998764 56778
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccccc
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1107)
..+|+|++|- - ..+|++|+.|++|++|+...+.....+. ..
T Consensus 247 -----------------------T~~VTCvrwG-G-~gliySgS~DrtIkvw~a~dG~~~r~lk-------------GH- 287 (480)
T KOG0271|consen 247 -----------------------TASVTCVRWG-G-EGLIYSGSQDRTIKVWRALDGKLCRELK-------------GH- 287 (480)
T ss_pred -----------------------ccceEEEEEc-C-CceEEecCCCceEEEEEccchhHHHhhc-------------cc-
Confidence 7899999996 3 3589999999999999998653221100 00
Q ss_pred CccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCC
Q 001287 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1107)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1107)
.||.... +.+ .++ +++..
T Consensus 288 -------ahwvN~l--als----------Tdy-------~LRtg------------------------------------ 305 (480)
T KOG0271|consen 288 -------AHWVNHL--ALS----------TDY-------VLRTG------------------------------------ 305 (480)
T ss_pred -------chheeee--ecc----------chh-------hhhcc------------------------------------
Confidence 0121110 000 000 00000
Q ss_pred CCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhH--HHhhcc
Q 001287 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSE--IATFTK 463 (1107)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~--~~~~~~ 463 (1107)
.||.... . + +...+ -.+...
T Consensus 306 ----------------af~~t~~----------~-------~-------------------------~~~se~~~~Al~r 327 (480)
T KOG0271|consen 306 ----------------AFDHTGR----------K-------P-------------------------KSFSEEQKKALER 327 (480)
T ss_pred ----------------ccccccc----------c-------C-------------------------CChHHHHHHHHHH
Confidence 0000000 0 0 00000 000111
Q ss_pred ccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCc-eeEEEeeccceeeeeecCCCCCeEEE
Q 001287 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV-FKLICALDAEVQGIEVAGSRAPVSTL 542 (1107)
Q Consensus 464 ~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~-l~~~~~l~~~~~~~~l~~h~~~Vt~l 542 (1107)
|+. .....++.+++|+.|.++.+|+-.... +. ..+.+|..-|..+
T Consensus 328 Y~~-----------------------~~~~~~erlVSgsDd~tlflW~p~~~kkpi-----------~rmtgHq~lVn~V 373 (480)
T KOG0271|consen 328 YEA-----------------------VLKDSGERLVSGSDDFTLFLWNPFKSKKPI-----------TRMTGHQALVNHV 373 (480)
T ss_pred HHH-----------------------hhccCcceeEEecCCceEEEecccccccch-----------hhhhchhhheeeE
Confidence 100 122334689999999999999865443 11 2477999999999
Q ss_pred EEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEe
Q 001287 543 SFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1107)
Q Consensus 543 ~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs 622 (1107)
.||||++++|+++-|..|++|+-.+. +.+.+|++|-++|..++||.|.++|++|+
T Consensus 374 ~fSPd~r~IASaSFDkSVkLW~g~tG-------------------------k~lasfRGHv~~VYqvawsaDsRLlVS~S 428 (480)
T KOG0271|consen 374 SFSPDGRYIASASFDKSVKLWDGRTG-------------------------KFLASFRGHVAAVYQVAWSADSRLLVSGS 428 (480)
T ss_pred EECCCccEEEEeecccceeeeeCCCc-------------------------chhhhhhhccceeEEEEeccCccEEEEcC
Confidence 99999999999999999999999887 34678899999999999999999999999
Q ss_pred CCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEe
Q 001287 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1107)
Q Consensus 623 ~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d 698 (1107)
.|.+++|||+++.++. .-++||...|.++.|+ |++..+++|++|..+++|-
T Consensus 429 kDsTLKvw~V~tkKl~---~DLpGh~DEVf~vDws----------------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLK---QDLPGHADEVFAVDWS----------------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeec---ccCCCCCceEEEEEec----------------------CCCceeecCCCceEEEeec
Confidence 9999999999999988 5789999999999999 7788999999999999994
No 3
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-36 Score=323.68 Aligned_cols=457 Identities=15% Similarity=0.208 Sum_probs=328.4
Q ss_pred ceeeeec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCC------------------------------
Q 001287 26 LRIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP------------------------------ 74 (1107)
Q Consensus 26 ~~~~~~~-G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~------------------------------ 74 (1107)
+..+.-| +|.+.++...|+|.|-|||+|...|.|||||..+.+.++..+
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 4445555 578888999999999999999999999999976533221111
Q ss_pred ------------------------------------------------------------CCCCEEEEEEEeCCCEEEEE
Q 001287 75 ------------------------------------------------------------SQLPYKNLEFLQNQGFLISI 94 (1107)
Q Consensus 75 ------------------------------------------------------------h~~~V~~l~fs~d~~~L~S~ 94 (1107)
|..-|.|+.|+|||.+++++
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence 55669999999999999999
Q ss_pred eCCCcEEEEEcCCCeeeeee----ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccC
Q 001287 95 TNDNEIQVWSLESRSLACCL----KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1107)
Q Consensus 95 s~d~~I~vWDl~s~~~~~~~----~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1107)
+.|+.|.++|-.+++.+..+ .|.+.|.+++|+|++..+++.+.|.+++||+... +++.+. +.+...
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~--~slv~t-~~~~~~------- 278 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST--NSLVST-WPMGST------- 278 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec--cceEEE-eecCCc-------
Confidence 99999999999999988877 4889999999999999999999999999999886 356543 222211
Q ss_pred CCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE-EEeCCccccccccccCCCCCCCCccccCCCCCCCCC
Q 001287 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1107)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1107)
-.+...++.|+ ..+|++.+.+|+|.+++.....+. .+.|| .
T Consensus 279 ----v~dqqvG~lWq----kd~lItVSl~G~in~ln~~d~~~~~~i~GH------------------------------n 320 (603)
T KOG0318|consen 279 ----VEDQQVGCLWQ----KDHLITVSLSGTINYLNPSDPSVLKVISGH------------------------------N 320 (603)
T ss_pred ----hhceEEEEEEe----CCeEEEEEcCcEEEEecccCCChhheeccc------------------------------c
Confidence 11446677783 446999999999999999887654 46677 8
Q ss_pred CceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceE
Q 001287 250 KEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRL 329 (1107)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~l 329 (1107)
+.|+++.- ++|+++|++|+.||.|.-|+..++..-......+.+.+..+ +..+.+.+
T Consensus 321 K~ITaLtv-~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~----------------------~~~~~~~~ 377 (603)
T KOG0318|consen 321 KSITALTV-SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGM----------------------AASESGEL 377 (603)
T ss_pred cceeEEEE-cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEE----------------------eecCCCcE
Confidence 89999995 69999999999999999999987754332212222222221 12333455
Q ss_pred EEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEecccee
Q 001287 330 FVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLT 409 (1107)
Q Consensus 330 lv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~ 409 (1107)
+..|-+|. |.++.+......... .+.++.+ ...++..++ ..+++++...++.++.+....
T Consensus 378 ~t~g~Dd~-----l~~~~~~~~~~t~~~----~~~lg~Q--P~~lav~~d---------~~~avv~~~~~iv~l~~~~~~ 437 (603)
T KOG0318|consen 378 FTIGWDDT-----LRVISLKDNGYTKSE----VVKLGSQ--PKGLAVLSD---------GGTAVVACISDIVLLQDQTKV 437 (603)
T ss_pred EEEecCCe-----EEEEecccCcccccc----eeecCCC--ceeEEEcCC---------CCEEEEEecCcEEEEecCCcc
Confidence 55554442 334433221110000 0111111 112222222 123444444444443311110
Q ss_pred eeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCcc
Q 001287 410 TLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPIT 489 (1107)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~ 489 (1107)
... | .....+++
T Consensus 438 ~~~----------------------------------------------------------------~----~~y~~s~v 449 (603)
T KOG0318|consen 438 SSI----------------------------------------------------------------P----IGYESSAV 449 (603)
T ss_pred eee----------------------------------------------------------------c----cccccceE
Confidence 000 0 01123456
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~ 569 (1107)
+++|+++.++.|++||.|+||.+.+..+... ..+..|.++|++++||||+.|||+++..+.|.+|+.....
T Consensus 450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee---------~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEE---------AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred EEcCCCCEEEEecccceEEEEEecCCcccce---------eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence 8999999999999999999999998775411 2366899999999999999999999999999999998752
Q ss_pred CCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCC
Q 001287 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1107)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~ 649 (1107)
. -...+..|.+.|.||+|+|+.+++|+|+-|-+|.||++..+.-. ......|..
T Consensus 521 ~------------------------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~ 574 (603)
T KOG0318|consen 521 V------------------------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLG 574 (603)
T ss_pred e------------------------ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eEecccccc
Confidence 1 12345679999999999999999999999999999999887544 223356999
Q ss_pred ceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
.|+.|.|-. +..|++.+.|..|++|..
T Consensus 575 gVn~v~wld-----------------------e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 575 GVNSVAWLD-----------------------ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred CceeEEEec-----------------------CceEEeccCcceeEEecc
Confidence 999999993 456999999999999985
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-39 Score=331.27 Aligned_cols=368 Identities=14% Similarity=0.151 Sum_probs=268.8
Q ss_pred cccceeeee-----cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeC
Q 001287 23 DLNLRIAVH-----YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITN 96 (1107)
Q Consensus 23 ~~~~~~~~~-----~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~ 96 (1107)
-+..|.++| .||...|-|++|+|+++.||+|+.|.++|+||.++.. .....+|..+|.|++|+|||..|+|++.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 344555555 4999999999999999999999999999999997654 4578899999999999999999999999
Q ss_pred CCcEEEEEcCCCeeeee-e-ccCCCeEEEEEec-----CCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccccc
Q 001287 97 DNEIQVWSLESRSLACC-L-KWESNITAFSVIS-----GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 97 d~~I~vWDl~s~~~~~~-~-~~~~~Vt~l~~~~-----~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
||+|++||..+++.+.. + .|...|++++|.| ..++|++++.||+|+||+... ++.+ +.+.+|.
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~--~~~~---~~lsgHT----- 247 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL--GTCV---RTLSGHT----- 247 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC--ceEE---EEeccCc-----
Confidence 99999999999976643 3 7899999999975 457999999999999999874 3444 5588888
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE-EEeCCccccccccccCCCCCCCCccccCCCCCCCC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1107)
.+|+||.| -.+| ++++|+.|++|++|+...+++. .+.||
T Consensus 248 -------~~VTCvrw--GG~g-liySgS~DrtIkvw~a~dG~~~r~lkGH------------------------------ 287 (480)
T KOG0271|consen 248 -------ASVTCVRW--GGEG-LIYSGSQDRTIKVWRALDGKLCRELKGH------------------------------ 287 (480)
T ss_pred -------cceEEEEE--cCCc-eEEecCCCceEEEEEccchhHHHhhccc------------------------------
Confidence 89999999 4345 5999999999999999888764 35666
Q ss_pred CCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCce
Q 001287 249 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR 328 (1107)
Q Consensus 249 ~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~ 328 (1107)
...|..++. ...-.|-+|..|-+=+ .+............+ +. ......+.
T Consensus 288 ahwvN~lal--sTdy~LRtgaf~~t~~--------~~~~~se~~~~Al~r----Y~----------------~~~~~~~e 337 (480)
T KOG0271|consen 288 AHWVNHLAL--STDYVLRTGAFDHTGR--------KPKSFSEEQKKALER----YE----------------AVLKDSGE 337 (480)
T ss_pred chheeeeec--cchhhhhccccccccc--------cCCChHHHHHHHHHH----HH----------------HhhccCcc
Confidence 333444441 1111222222211100 000000000000000 00 01222345
Q ss_pred EEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccce
Q 001287 329 LFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASL 408 (1107)
Q Consensus 329 llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~ 408 (1107)
.+|+|.+|. .+-+|......+
T Consensus 338 rlVSgsDd~-------tlflW~p~~~kk---------------------------------------------------- 358 (480)
T KOG0271|consen 338 RLVSGSDDF-------TLFLWNPFKSKK---------------------------------------------------- 358 (480)
T ss_pred eeEEecCCc-------eEEEeccccccc----------------------------------------------------
Confidence 556665553 222222110000
Q ss_pred eeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCc
Q 001287 409 TTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPI 488 (1107)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~ 488 (1107)
+| .-.-||...++.
T Consensus 359 ---------------------------pi---------------------------------------~rmtgHq~lVn~ 372 (480)
T KOG0271|consen 359 ---------------------------PI---------------------------------------TRMTGHQALVNH 372 (480)
T ss_pred ---------------------------ch---------------------------------------hhhhchhhheee
Confidence 00 011234445556
Q ss_pred cccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCC
Q 001287 489 TKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1107)
Q Consensus 489 ~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~ 568 (1107)
+.|+||+++||+|+-|.+||+||..++... ..+.+|-.+|..++|+.|+++|++|+.|.+++||++.+.
T Consensus 373 V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-----------asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 373 VSFSPDGRYIASASFDKSVKLWDGRTGKFL-----------ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred EEECCCccEEEEeecccceeeeeCCCcchh-----------hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 689999999999999999999999999865 568899999999999999999999999999999999886
Q ss_pred CCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001287 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1107)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd 631 (1107)
.+...+-+|...|.++.|+|||+.+|+|+.|..+++|.
T Consensus 442 -------------------------Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 -------------------------KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -------------------------eecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 23455678999999999999999999999999999994
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.8e-37 Score=340.53 Aligned_cols=572 Identities=15% Similarity=0.167 Sum_probs=411.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCcceeeeC---CCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee--c
Q 001287 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS---PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--K 115 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~---~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~--~ 115 (1107)
++|+++|+.|++...| .|.+-|.......... +-...+++++.+||+.+|++++....+++|++.+++++.++ .
T Consensus 25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence 8999999999998754 5777777655553222 24458999999999999999999999999999999998887 5
Q ss_pred cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEE
Q 001287 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1107)
Q Consensus 116 ~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1107)
|+++|.-++|+|.+..+++|+.||.|+||++... .+. ..+.+|. +.|.++.|+|......|++
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~--~~t---h~fkG~g------------GvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG--YCT---HSFKGHG------------GVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCC--EEE---EEecCCC------------ceEEEEEeCCccchhheee
Confidence 8999999999999999999999999999999863 333 3377766 8999999999777777899
Q ss_pred EECCCeEEEEEccCCEE--EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCc
Q 001287 196 AYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1107)
Q Consensus 196 ~~~dg~V~vwdl~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~ 273 (1107)
|+.|++|++||+...+. .....| ...|+++.+. +|+..+++++.|..
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~~H------------------------------~S~vtsL~~~-~d~~~~ls~~RDkv 215 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMILH------------------------------KSAVTSLAFS-EDSLELLSVGRDKV 215 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHHhh------------------------------hhheeeeeec-cCCceEEEeccCcE
Confidence 99999999999997654 122333 7789999975 99999999999999
Q ss_pred EEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcccc
Q 001287 274 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1107)
Q Consensus 274 I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~ 353 (1107)
+.+||+...+.....+ ... ....+..++- . ....+.++++.|.++ ++.+|...+
T Consensus 216 i~vwd~~~~~~l~~lp-----------~ye--~~E~vv~l~~---~---~~~~~~~~~TaG~~g-------~~~~~d~es 269 (775)
T KOG0319|consen 216 IIVWDLVQYKKLKTLP-----------LYE--SLESVVRLRE---E---LGGKGEYIITAGGSG-------VVQYWDSES 269 (775)
T ss_pred EEEeehhhhhhhheec-----------hhh--heeeEEEech---h---cCCcceEEEEecCCc-------eEEEEeccc
Confidence 9999995443222111 000 0001111100 0 122256788887777 888887765
Q ss_pred ccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccC
Q 001287 354 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 433 (1107)
Q Consensus 354 ~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1107)
...++...+-+ .+.+.+...++.. ..++.++.+-++.+||..++...-
T Consensus 270 ~~~~~~~~~~~---~~e~~~~~~~~~~--------~~~l~vtaeQnl~l~d~~~l~i~k--------------------- 317 (775)
T KOG0319|consen 270 GKCVYKQRQSD---SEEIDHLLAIESM--------SQLLLVTAEQNLFLYDEDELTIVK--------------------- 317 (775)
T ss_pred chhhhhhccCC---chhhhcceecccc--------CceEEEEccceEEEEEccccEEeh---------------------
Confidence 44443322222 2335555555542 256777777788888644321100
Q ss_pred CCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCC
Q 001287 434 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 513 (1107)
Q Consensus 434 ~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~ 513 (1107)
.+.|-+.+...+...-|+.+.++.++..+.+|+++..
T Consensus 318 -------------------------------------------~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~ 354 (775)
T KOG0319|consen 318 -------------------------------------------QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLP 354 (775)
T ss_pred -------------------------------------------hhcCCchhheeeeecCCccceEEEEeCCCceEEEecC
Confidence 1333333444444566778899999999999999999
Q ss_pred CCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcc
Q 001287 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1107)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 593 (1107)
+..+. + +.+|...|.+|+...+|-+|++++.|.+|++|+++.+... .
T Consensus 355 ~~~c~-----------i-i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~---------------------~ 401 (775)
T KOG0319|consen 355 TSYCQ-----------I-IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK---------------------S 401 (775)
T ss_pred CCceE-----------E-EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch---------------------h
Confidence 88877 3 7799999999996677789999999999999999544211 1
Q ss_pred eeEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC-----eEEEEee-cCCCCCCceEEEEEeecccCcccc
Q 001287 594 LCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLL-----SVLFFTD-DISGSSSPIISMTWTEFKNTHSLA 666 (1107)
Q Consensus 594 ~~~~~~~~h~~~Vt~la~sp~~-~~la~Gs~dg~V~iwd~~~~-----~~~~~~~-~~~~h~~~V~~l~fs~~~~~~~~~ 666 (1107)
.|+....+|...|++++++..+ .+|++++.|+++++|++... ..+++.+ ....|...|.+++.+
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia--------- 472 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA--------- 472 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec---------
Confidence 2566678999999999998755 68999999999999999761 1222111 123488999999988
Q ss_pred CCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCccccccccccccccC
Q 001287 667 KNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAK 746 (1107)
Q Consensus 667 ~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 746 (1107)
|++.++++|+.|.+..+|+.+.+.+++...-|
T Consensus 473 -------------~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH----------------------------------- 504 (775)
T KOG0319|consen 473 -------------PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH----------------------------------- 504 (775)
T ss_pred -------------CCCceEEecccccceeeecccCceEEEEeeCC-----------------------------------
Confidence 66889999999999999999987776654211
Q ss_pred CCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecC-eeEEEeccccccccceeeeeec-CCCcceeeeeeec
Q 001287 747 NKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQKVK-HKNRCCWASTIEK 824 (1107)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~-~l~v~sl~~~~~g~~~~i~k~~-~~~~~~~~~~~~~ 824 (1107)
.--+=.+.|++. ++++++||.| .|++|++.. -.|++-.. ++.. +....|..
T Consensus 505 -------------------~RGvw~V~Fs~~--dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~a-Vlra~F~~ 557 (775)
T KOG0319|consen 505 -------------------TRGVWCVSFSKN--DQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTSA-VLRASFIR 557 (775)
T ss_pred -------------------ccceEEEEeccc--cceeEeccCCceEEEEEecc-----ceeeeeecCccce-eEeeeeee
Confidence 111112334444 8899999988 999999987 34444433 2222 22333444
Q ss_pred CCceeEEEEEeecCcEEEeecCCccccccccccceeeceecCccccccccc-CCcEEEEcC-ceeEE
Q 001287 825 DEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAF 889 (1107)
Q Consensus 825 ~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Gq~~l~~~-~e~~~ 889 (1107)
++..|+...+||.|.||.+.+-+=++-. .-|.+-+=++..+ ++.+++++| |+...
T Consensus 558 --~~~qliS~~adGliKlWnikt~eC~~tl--------D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 558 --NGKQLISAGADGLIKLWNIKTNECEMTL--------DAHNDRVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred --CCcEEEeccCCCcEEEEeccchhhhhhh--------hhccceeEEEeecCccceeEecCCCeEEE
Confidence 6789999999999999999997744422 2355556677777 778888888 55443
No 6
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=338.64 Aligned_cols=500 Identities=16% Similarity=0.162 Sum_probs=345.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~ 112 (1107)
-...++|+.-+|+.-+||+|-.||.|+||+....+ .+...+|..+|+.|.|...|.+|+|+|.|+.|.|||+-...-+.
T Consensus 64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~ 143 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF 143 (888)
T ss_pred ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE
Confidence 34579999999999999999999999999996544 45777899999999999999999999999999999998877666
Q ss_pred ee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 113 ~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
.+ +|...||.+-|..+.+++++.+.|+.|++|+++.+ .+. ++.-.|. +.|.++++++ +
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq--hCf---~Thvd~r------------~Eiw~l~~~~----~ 202 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ--HCF---ETHVDHR------------GEIWALVLDE----K 202 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc--eee---eEEeccc------------ceEEEEEEec----c
Confidence 65 78999999999998999999999999999999863 222 2244444 7799999954 6
Q ss_pred EEEEEECCCeEEEEEccCC-------EEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCE
Q 001287 192 RVLIAYENALVILWDVSEA-------QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1107)
Q Consensus 192 ~ll~~~~dg~V~vwdl~~~-------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1107)
++++++.|+.+++|++... +.+..... +. ...+..++.-.+.. .+++++
T Consensus 203 ~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~-G~----------------------~~rqsk~R~i~l~~-d~s~r~ 258 (888)
T KOG0306|consen 203 LLVTAGTDSELKVWELAFEDDEKETNRYISTKLR-GT----------------------FIRQSKGREINLVT-DFSDRF 258 (888)
T ss_pred eEEEEecCCceEEEEeecccccccccccceeecc-ce----------------------eeeccCCceeEEee-cCcccE
Confidence 7999999999999998321 11111000 00 00001222223332 366777
Q ss_pred EEEEEcCCcEEEEeCCCCCCCCC-------------c----------------------------------cCC------
Q 001287 265 LAVGYIDGDILLWNTSTTASTKG-------------Q----------------------------------QTG------ 291 (1107)
Q Consensus 265 l~sg~~dG~I~lWd~~~~~~~~~-------------~----------------------------------~~~------ 291 (1107)
+++-+.|..+.++.+.+.+.... . ++.
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~l 338 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTL 338 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeE
Confidence 88888888888887765430000 0 000
Q ss_pred ---CCCceeeeeccc-ccC-c-----cce-EEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcccccccccee
Q 001287 292 ---SRNNVVKLELSS-AER-R-----LPV-IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1107)
Q Consensus 292 ---~~~~~~~l~~~~-~~~-~-----~~i-~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~ 360 (1107)
.++.+....+.. ... . ..+ ...|.....+++++.+..++.+|+.+ -+++|.....+.+
T Consensus 339 v~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~--------SikiWn~~t~kci--- 407 (888)
T KOG0306|consen 339 VLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGE--------SIKIWNRDTLKCI--- 407 (888)
T ss_pred EEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCC--------cEEEEEccCccee---
Confidence 000000000000 000 0 000 01122233334466666677777665 5677765533332
Q ss_pred eeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEE
Q 001287 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVA 440 (1107)
Q Consensus 361 ~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 440 (1107)
+ .++.. .+....+.|... .+++.+.+|.+.+||.++....
T Consensus 408 R--Ti~~~-y~l~~~Fvpgd~--------~Iv~G~k~Gel~vfdlaS~~l~----------------------------- 447 (888)
T KOG0306|consen 408 R--TITCG-YILASKFVPGDR--------YIVLGTKNGELQVFDLASASLV----------------------------- 447 (888)
T ss_pred E--Eeccc-cEEEEEecCCCc--------eEEEeccCCceEEEEeehhhhh-----------------------------
Confidence 2 22222 455666666533 5677788999999985432110
Q ss_pred EEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCC-----C
Q 001287 441 EFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY-----P 515 (1107)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~-----~ 515 (1107)
+ ....|.+.+..++.+||+..++||+.|.+|++||..- +
T Consensus 448 -------------------E-----------------ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 448 -------------------E-----------------TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred -------------------h-----------------hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 0 1112334455668899999999999999999999541 2
Q ss_pred ceeEEEeecc-ceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcce
Q 001287 516 VFKLICALDA-EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1107)
Q Consensus 516 ~l~~~~~l~~-~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 594 (1107)
.......++. +. .++ ...|.|+.+|||+++||++-.|.+|+||-+++- .
T Consensus 492 t~~k~lsl~~~rt--Lel---~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-------------------------K 541 (888)
T KOG0306|consen 492 TQKKVLSLKHTRT--LEL---EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-------------------------K 541 (888)
T ss_pred ccceeeeeccceE--Eec---cccEEEEEEcCCCcEEEEEeccCeEEEEEecce-------------------------e
Confidence 2111122221 11 122 247999999999999999999999999999885 3
Q ss_pred eEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCC
Q 001287 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1107)
Q Consensus 595 ~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~ 674 (1107)
....+.+|.-||.||.+|||++++++|+.|.+|+||-+.-|.+. +.+.+|...|.++.|-
T Consensus 542 FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~fAHdDSvm~V~F~----------------- 601 (888)
T KOG0306|consen 542 FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSFFAHDDSVMSVQFL----------------- 601 (888)
T ss_pred eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhhhcccCceeEEEEc-----------------
Confidence 56778899999999999999999999999999999999998887 5777899999999999
Q ss_pred CCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccceeeEEEE
Q 001287 675 EVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEV 723 (1107)
Q Consensus 675 ~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~~~~~~~ 723 (1107)
|...+++++++|+.|.-||++.-++|... +.+.+.+.++.+
T Consensus 602 -----P~~~~FFt~gKD~kvKqWDg~kFe~iq~L---~~H~~ev~cLav 642 (888)
T KOG0306|consen 602 -----PKTHLFFTCGKDGKVKQWDGEKFEEIQKL---DGHHSEVWCLAV 642 (888)
T ss_pred -----ccceeEEEecCcceEEeechhhhhhheee---ccchheeeeeEE
Confidence 44677999999999999999987776544 233344444444
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=319.69 Aligned_cols=479 Identities=14% Similarity=0.159 Sum_probs=345.6
Q ss_pred cceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-CCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 25 NLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 25 ~~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
+.++.+.-|-...-..+.|++||.-+.+-. .++|-+||+ ++....+..++...|++++.||+|.+|+++...|...+-
T Consensus 4 efrfsNllGTvyr~Gnl~ft~dG~sviSPv-GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lv 82 (893)
T KOG0291|consen 4 EFRFSNLLGTVYRAGNLVFTKDGNSVISPV-GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLV 82 (893)
T ss_pred ccchhhcccceeecCcEEECCCCCEEEecc-CCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEE
Confidence 345555566666667799999999887665 588999999 566777888999999999999999999999999999999
Q ss_pred EcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEE
Q 001287 104 SLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1107)
Q Consensus 104 Dl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1107)
++..+..++.+.....|.|+.|+|+++++++|..+- +.||........ .-.||...... ..+.+.|+++.
T Consensus 83 s~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~-lqiw~~P~~~~~-~~~pFvl~r~~--------~g~fddi~si~ 152 (893)
T KOG0291|consen 83 SLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNL-LQIWHAPGEIKN-EFNPFVLHRTY--------LGHFDDITSID 152 (893)
T ss_pred ecccceeeEEEeecCccceEEECCCCcEEEEEecce-eEEEecCcchhc-ccCcceEeeee--------cCCccceeEEE
Confidence 999999999999999999999999999999998664 788986542221 11133222100 11227899999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCEE---EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 184 PHPNSSGNRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~vwdl~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
| +++...|++|+.|-+++||+++..+- ..+.|| ...|.+.. +..
T Consensus 153 W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gH------------------------------kd~Vvacf-F~~ 199 (893)
T KOG0291|consen 153 W--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGH------------------------------KDYVVACF-FGA 199 (893)
T ss_pred e--ccCCceEEeccccceEEEEEeccccccceEeccCC------------------------------CcceEEEE-ecc
Confidence 9 55888899999999999999887654 334566 44455444 568
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCCCCCCc--c---C--------CCCCceeeeecccccCccceEEEEeeccc-----ccC
Q 001287 261 SGSILAVGYIDGDILLWNTSTTASTKGQ--Q---T--------GSRNNVVKLELSSAERRLPVIVLHWSTNK-----ESR 322 (1107)
Q Consensus 261 dg~~l~sg~~dG~I~lWd~~~~~~~~~~--~---~--------~~~~~~~~l~~~~~~~~~~i~~~~w~~~~-----~~~ 322 (1107)
+...+++.+.||.|.+|.+......... . . .....+.+..+ ....-||.... ..+
T Consensus 200 ~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~-------~k~~k~~ln~~~~kvtaa~ 272 (893)
T KOG0291|consen 200 NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFW-------YKTKKHYLNQNSSKVTAAA 272 (893)
T ss_pred CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEE-------EEEEeeeecccccceeeee
Confidence 8999999999999999998732110000 0 0 00011111110 01111222211 122
Q ss_pred CCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCC-CccceEEEccCCCCCCCCCcceEEEE-ccCCeE
Q 001287 323 SNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT-GSFADMILLSSAGATVGNHKADLFVL-TSPGQL 400 (1107)
Q Consensus 323 ~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~-~~v~d~~~~p~~~~~~~~~~~~l~vl-~~~G~l 400 (1107)
+.+...++++|-..+ +..|..-+++..+ ..+... .++..+.+...+. .+++. ..-||+
T Consensus 273 fH~~t~~lvvgFssG-------~f~LyelP~f~li-----h~LSis~~~I~t~~~N~tGD--------WiA~g~~klgQL 332 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSG-------EFGLYELPDFNLI-----HSLSISDQKILTVSFNSTGD--------WIAFGCSKLGQL 332 (893)
T ss_pred ccCCceEEEEEecCC-------eeEEEecCCceEE-----EEeecccceeeEEEecccCC--------EEEEcCCccceE
Confidence 445566666665554 3333222222222 223332 3566666655422 34443 233788
Q ss_pred EEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccC
Q 001287 401 HFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSG 480 (1107)
Q Consensus 401 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g 480 (1107)
.+|+...-.-.+ -..
T Consensus 333 lVweWqsEsYVl-----------------------------------------------------------------KQQ 347 (893)
T KOG0291|consen 333 LVWEWQSESYVL-----------------------------------------------------------------KQQ 347 (893)
T ss_pred EEEEeeccceee-----------------------------------------------------------------ecc
Confidence 888732211111 122
Q ss_pred CCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceE
Q 001287 481 GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLV 560 (1107)
Q Consensus 481 g~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V 560 (1107)
||...+.+++.+|||+++|||+.||.|||||...+.|- +++..|+..|+++.|+..++.|++.+.||+|
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~-----------vTFteHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF-----------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE-----------EEeccCCCceEEEEEEecCCEEEEeecCCeE
Confidence 45556667789999999999999999999999999988 7899999999999999999999999999999
Q ss_pred EEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeec-CcCEEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCeEE
Q 001287 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NSPVRALQFTSSGAKLAVGFECG-RVAVLDMNLLSVL 638 (1107)
Q Consensus 561 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-~~~Vt~la~sp~~~~la~Gs~dg-~V~iwd~~~~~~~ 638 (1107)
+.||+.... +..+|..+ ...-.||+..|.|.+++.|+.|. .|.||+++++.++
T Consensus 417 RAwDlkRYr-------------------------NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 417 RAWDLKRYR-------------------------NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred Eeeeecccc-------------------------eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 999998863 45566543 45578999999999999998775 5999999999998
Q ss_pred EEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 639 FFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 639 ~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
..++||.+||.+|.|+ |.+..|++++.|.+|++||.-
T Consensus 472 ---DiLsGHEgPVs~l~f~----------------------~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 472 ---DILSGHEGPVSGLSFS----------------------PDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred ---ehhcCCCCcceeeEEc----------------------cccCeEEeccccceEEEEEee
Confidence 7899999999999999 558889999999999999964
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=321.26 Aligned_cols=478 Identities=15% Similarity=0.176 Sum_probs=351.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce---------eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEE
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG---------LLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~---------~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~ 101 (1107)
|+-....+.|+.|||+|+++|+|.. ..+.||..++... ....+|-..|++|.|+.|.++|+++|.|-.++
T Consensus 92 ~f~fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r 170 (893)
T KOG0291|consen 92 RFNFKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR 170 (893)
T ss_pred EEeecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEE
Confidence 4588999999999999999999974 7899998865432 24557888999999999999999999999999
Q ss_pred EEEcCCCeeeee---eccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeec-------------------cee
Q 001287 102 VWSLESRSLACC---LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL-------------------PYN 159 (1107)
Q Consensus 102 vWDl~s~~~~~~---~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~-------------------~~~ 159 (1107)
+|+++..+-+.. ..|...|.+.-|..+...|++.+.||.+.+|.++......... ..+
T Consensus 171 l~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 171 LFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred EEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence 999987655332 2788999999999999999999999999999998311110000 000
Q ss_pred ecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccc
Q 001287 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1107)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 239 (1107)
+... +.+.+.+.. ....|++.+||| ..+.|++|+++|...+|.+..-.++....- .
T Consensus 251 ~~~~-k~~k~~ln~-~~~kvtaa~fH~--~t~~lvvgFssG~f~LyelP~f~lih~LSi---------s----------- 306 (893)
T KOG0291|consen 251 IFWY-KTKKHYLNQ-NSSKVTAAAFHK--GTNLLVVGFSSGEFGLYELPDFNLIHSLSI---------S----------- 306 (893)
T ss_pred eEEE-EEEeeeecc-cccceeeeeccC--CceEEEEEecCCeeEEEecCCceEEEEeec---------c-----------
Confidence 0000 000111111 115699999999 466799999999999999999877654321 1
Q ss_pred cCCCCCCCCCCceeEEEeecCCCCEEEEEEcC-CcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecc
Q 001287 240 EGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTN 318 (1107)
Q Consensus 240 ~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d-G~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~ 318 (1107)
+.+|..+.|. ..|.+|+.|+.. |.|.+|+..+... +.+.+- +...+.
T Consensus 307 ---------~~~I~t~~~N-~tGDWiA~g~~klgQLlVweWqsEsY-----------VlKQQg----H~~~i~------- 354 (893)
T KOG0291|consen 307 ---------DQKILTVSFN-STGDWIAFGCSKLGQLLVWEWQSESY-----------VLKQQG----HSDRIT------- 354 (893)
T ss_pred ---------cceeeEEEec-ccCCEEEEcCCccceEEEEEeeccce-----------eeeccc----ccccee-------
Confidence 6789999986 789999999865 8999999975521 111111 111111
Q ss_pred cccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCC-CccceEEEccCCCCCCCCCcceEEEEccC
Q 001287 319 KESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT-GSFADMILLSSAGATVGNHKADLFVLTSP 397 (1107)
Q Consensus 319 ~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~-~~v~d~~~~p~~~~~~~~~~~~l~vl~~~ 397 (1107)
+++.++||+++++|++|+ -+++|.....-.. .++..+ ..+..+.+.... ..++..+-+
T Consensus 355 -~l~YSpDgq~iaTG~eDg-------KVKvWn~~SgfC~-----vTFteHts~Vt~v~f~~~g--------~~llssSLD 413 (893)
T KOG0291|consen 355 -SLAYSPDGQLIATGAEDG-------KVKVWNTQSGFCF-----VTFTEHTSGVTAVQFTARG--------NVLLSSSLD 413 (893)
T ss_pred -eEEECCCCcEEEeccCCC-------cEEEEeccCceEE-----EEeccCCCceEEEEEEecC--------CEEEEeecC
Confidence 245789999999999998 8899976532222 344433 356666666653 367777889
Q ss_pred CeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCcccc
Q 001287 398 GQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWP 477 (1107)
Q Consensus 398 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp 477 (1107)
|.+..||......+..
T Consensus 414 GtVRAwDlkRYrNfRT---------------------------------------------------------------- 429 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRT---------------------------------------------------------------- 429 (893)
T ss_pred CeEEeeeecccceeee----------------------------------------------------------------
Confidence 9999999543322221
Q ss_pred ccCCCCCCCCccccCCCCcEEEEEecCCc-EEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEecc
Q 001287 478 LSGGVPSPVPITKCHSVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE 556 (1107)
Q Consensus 478 ~~gg~~~~~~~~~~s~~~~~laTgs~Dgt-IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~ 556 (1107)
.+...+...++++..|.|.++++|+.|.. |.+|+++++.+. -.+.||.+||.+|+|+|++..|++|+.
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll-----------DiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL-----------DILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee-----------ehhcCCCCcceeeEEccccCeEEeccc
Confidence 12222334466788888999999999986 999999999976 338899999999999999999999999
Q ss_pred CceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe
Q 001287 557 FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS 636 (1107)
Q Consensus 557 dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~ 636 (1107)
|.+|++|++-..... ..--.+...|++++|+|+|+-||+.+-||.|.+||++...
T Consensus 499 DkTVRiW~if~s~~~-------------------------vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGT-------------------------VETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred cceEEEEEeeccCce-------------------------eeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 999999998765321 1123567889999999999999999999999999998665
Q ss_pred EEEEee----cC-------------CCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 637 VLFFTD----DI-------------SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 637 ~~~~~~----~~-------------~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
.+.... .. ..-....++++|+ +++.++++|+....||++|.
T Consensus 554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS----------------------aDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS----------------------ADGKCILAGGESNSICIYDV 611 (893)
T ss_pred eeccccchhhccccccccceeehhhcccCCceEEEEEc----------------------CCCCEEEecCCcccEEEEEC
Confidence 442111 00 0122455666666 77999999999999999999
Q ss_pred CCcceecCC
Q 001287 700 SSENMISSS 708 (1107)
Q Consensus 700 ~~g~~i~~~ 708 (1107)
.++.++..+
T Consensus 612 ~~~vllkkf 620 (893)
T KOG0291|consen 612 PEGVLLKKF 620 (893)
T ss_pred chhheeeeE
Confidence 999988655
No 9
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-33 Score=343.72 Aligned_cols=262 Identities=21% Similarity=0.162 Sum_probs=198.7
Q ss_pred CCcEEEEEecCeeEEEeccccccccceeeeeecCCCcceeeeeeecCCceeEEEEEeecCcEEEeecCCccccccccccc
Q 001287 779 NDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMS 858 (1107)
Q Consensus 779 ~~~~~l~c~e~~l~v~sl~~~~~g~~~~i~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~ 858 (1107)
.+.+++.|+|+.+|||++++..++...-++...+...++|..+... .++|+|++.+|+|++++||+|+++....+-.
T Consensus 723 ~~~~~~i~~e~~~~v~~~~~q~~~~~~~~~~~~~~~~~~~~~i~~~---~~~l~~~~~~g~i~~~slp~Lre~~~~v~~l 799 (993)
T KOG1983|consen 723 IEVPTLICGESAIRVFSVPAQQCKELQLIHEAPVVGISVLDGISKP---EPSLDLLDANGHISKHSLPSLREEQFKVLPL 799 (993)
T ss_pred cccceEEecCCccceecccccccccceeeccccceeeeeeecccCc---cceeeEeecCCCccceecchhhhhhccccCC
Confidence 3789999999999999999965555555555555556666654332 6899999999999999999999999888888
Q ss_pred eeeceecCccccc-cccc-CCc-EEEEcCceeEEEEeecCCCceeccc----CCcceeehhhHHHHHhhcccCchhhhcc
Q 001287 859 ILRWNFKANMDKT-ISAD-NGQ-ITLANGSEVAFVNLLAGENEFSILE----SSPCLHDKVLEAAAAAAFNVSSNQKKKQ 931 (1107)
Q Consensus 859 ~~~~~~~~~~~~~-~~~s-~Gq-~~l~~~~e~~~~s~~~~~~~~~~~~----s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 931 (1107)
++.|++..++..+ .+|+ .++ .+++.+.|++.. ++.++.+..+.+ +++.++.+.+.+.+. ..|
T Consensus 800 p~~~~~i~~~~~~~~g~~~~~~~~~~~s~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 868 (993)
T KOG1983|consen 800 PLVKNIIKNKLTAGNGFSVHKVGELAASAVERSKK-TLEQELQELTNLGDISVLGLPLLKLEIPYAP----------IRQ 868 (993)
T ss_pred cchhhhcccchhccccccccchhheecchhhhhhc-cccccccccccccccccccccccchhhhhhh----------hhc
Confidence 8889888887654 3677 787 556666887774 788899999999 888888887776663 122
Q ss_pred ccccCcccccccccccccccccCCCCCCccCchhhhhcccCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcc
Q 001287 932 TTAAGILGGIVKGFRGEKMIHTLDDSIDPKSSFSQLGGIFSRPPFPDLSPAATNNEEIELNIDDIEIDEPPSMMATSSHE 1011 (1107)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1107)
++|.|+ ++++...++.. +..||.+.+|.++.+....|..+..
T Consensus 869 ----~~~~g~---l~~g~~~~~~~-------------------------------~i~~l~~e~~~~~~~~~~~~~~~~~ 910 (993)
T KOG1983|consen 869 ----SDIKGV---LFFGTVGCDPY-------------------------------KISELEGERISLATKYEVVPISSGD 910 (993)
T ss_pred ----cccccc---cccCcCCCChh-------------------------------hhcccccccccccccceeecccccc
Confidence 666553 44443222211 2457888888888887777655443
Q ss_pred cccccchhhhhhhhhcCCCCCCCCCCCCHHHHHHHhccCCChHH--HHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHH
Q 001287 1012 VTNTKKEKLSERERLLGVPDDAKPRLRTREEIIAKYRKAEDASS--VAAHARDKLFERQDKLERISRCTEELQSGAEDFA 1089 (1107)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~ 1089 (1107)
..+ ++ . ..+.....+.+..+|+++.+.++ ++.+|+++|+||+|||+++++||++|+++|++||
T Consensus 911 ~~~-~~----~----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s 975 (993)
T KOG1983|consen 911 VSS-RS----S----------ARAILGPPDGEEPKYAQASGVSSGSAASGALQPLNERGERLSRLEERTAEMANSAKQFS 975 (993)
T ss_pred CCc-cc----c----------cccccCCCcccchhhcccccccccchhhhcchhhHhhccccchHHHHHHHhhccHHHHH
Confidence 322 11 0 11333345556677888877765 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccC
Q 001287 1090 SLANELVKTMENRKWWKI 1107 (1107)
Q Consensus 1090 ~~a~~~~~~~~~~~~~~~ 1107 (1107)
++|||++.+|+.||||||
T Consensus 976 ~~a~e~~~~~~~kk~~~f 993 (993)
T KOG1983|consen 976 STAHELTGKYKVKKWYDF 993 (993)
T ss_pred HHHHHHHhhhhhhhhccC
Confidence 999999999999999997
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-30 Score=278.38 Aligned_cols=497 Identities=14% Similarity=0.144 Sum_probs=322.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee-eee-
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL-ACC- 113 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~-~~~- 113 (1107)
....|..+|.+..++..- ...|.+-+++... +..-.+|..+++-..|||.|-|++|+...|.|+|||...... +..
T Consensus 20 ~~~~ig~dpkgd~ilY~n-Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKne 98 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTN-GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNE 98 (603)
T ss_pred cceEeccCCCCCeEEEeC-CCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeee
Confidence 455688899998876653 4567777876544 446678999999999999999999999999999999987543 332
Q ss_pred e-ccCCCeEEEEEecCCCEEEEEcCC----CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 114 L-KWESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 114 ~-~~~~~Vt~l~~~~~~~~l~~g~~d----g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
+ ...++|..++|+++++++++.++. |.+..||-. .-.- .+.+|. ..|.++.|-|+
T Consensus 99 f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG----~SvG---ei~GhS------------r~ins~~~Kps- 158 (603)
T KOG0318|consen 99 FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG----NSVG---EITGHS------------RRINSVDFKPS- 158 (603)
T ss_pred eeecccccccceeCCCCcEEEEEecCccceeEEEEecCC----Cccc---eeeccc------------eeEeeeeccCC-
Confidence 2 456899999999999887766542 444455433 2221 256776 77999999997
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
..-|+++++.|++|.+|.-.--+... ...| .+-|.|+.| +|||.++++
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~H------------------------------skFV~~VRy-sPDG~~Fat 207 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREH------------------------------SKFVNCVRY-SPDGSRFAT 207 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCeeeeeccccc------------------------------ccceeeEEE-CCCCCeEEE
Confidence 56679999999999999755544433 2223 678999997 599999999
Q ss_pred EEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEE
Q 001287 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1107)
Q Consensus 268 g~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~ 347 (1107)
.+.||.+.+||-.+++.. ..+.. ...+...|..+.|. +|+..+++.+.|. .++
T Consensus 208 ~gsDgki~iyDGktge~v-----------g~l~~-~~aHkGsIfalsWs--------PDs~~~~T~SaDk-------t~K 260 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKV-----------GELED-SDAHKGSIFALSWS--------PDSTQFLTVSADK-------TIK 260 (603)
T ss_pred ecCCccEEEEcCCCccEE-----------EEecC-CCCccccEEEEEEC--------CCCceEEEecCCc-------eEE
Confidence 999999999999988532 22222 22244566666664 4667788888787 888
Q ss_pred cCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCC
Q 001287 348 LEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP 427 (1107)
Q Consensus 348 l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 427 (1107)
+|..+..+.+ ..++....+.|+..-.- . ....++.++.+|.+..++.... ..+
T Consensus 261 IWdVs~~slv-----~t~~~~~~v~dqqvG~l-----W-qkd~lItVSl~G~in~ln~~d~----------------~~~ 313 (603)
T KOG0318|consen 261 IWDVSTNSLV-----STWPMGSTVEDQQVGCL-----W-QKDHLITVSLSGTINYLNPSDP----------------SVL 313 (603)
T ss_pred EEEeeccceE-----EEeecCCchhceEEEEE-----E-eCCeEEEEEcCcEEEEecccCC----------------Chh
Confidence 8876643322 22333333333221110 0 0125666677777776652221 122
Q ss_pred cccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCC-------CccccCCCC-cEEE
Q 001287 428 GVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPV-------PITKCHSVD-RVYL 499 (1107)
Q Consensus 428 ~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~-------~~~~~s~~~-~~la 499 (1107)
..+.-|...||++........ .+ . ......-+.|-..-|+...+ ....+...+ .-|+
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~-i~---------S-----gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKT-IY---------S-----GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred heecccccceeEEEEcCCCCE-EE---------e-----eccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 333335555555554332210 00 0 00011123343333332211 001111112 4455
Q ss_pred EEecCCcEEEEeCCCCceeE------------EEeeccc-e------eee-eec--------CCCCCeEEEEEEeCCCeE
Q 001287 500 AGYHDGSVRIWDATYPVFKL------------ICALDAE-V------QGI-EVA--------GSRAPVSTLSFCFINSSL 551 (1107)
Q Consensus 500 Tgs~DgtIriWd~~~~~l~~------------~~~l~~~-~------~~~-~l~--------~h~~~Vt~l~fspd~~~L 551 (1107)
|.+.|.++|+-++....... +...... . .++ .+. .-...+++++++|++..+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 55556666665443221100 0000000 0 000 011 223456899999999999
Q ss_pred EEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001287 552 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1107)
Q Consensus 552 asg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd 631 (1107)
++|+.||.|+||.++..... .......|.++||+++||||+.+||+|...+.|.+||
T Consensus 459 aVGG~Dgkvhvysl~g~~l~-----------------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELK-----------------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred EEecccceEEEEEecCCccc-----------------------ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 99999999999999885321 1245568999999999999999999999999999999
Q ss_pred cCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 632 MNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 632 ~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
+.+..+. ...+.-|+..|.+|+|+ |+...|++|+-|-+|.||+.+.
T Consensus 516 ~~s~~~~--~~~w~FHtakI~~~aWs----------------------P~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 516 VASREVK--TNRWAFHTAKINCVAWS----------------------PNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred cccCcee--cceeeeeeeeEEEEEeC----------------------CCceEEEeccccceEEEEEccC
Confidence 9998873 33444599999999999 5678899999999999999863
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=291.89 Aligned_cols=591 Identities=15% Similarity=0.162 Sum_probs=389.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCc---ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeE
Q 001287 46 IQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNIT 121 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt 121 (1107)
.|+++|+. ..-.|.+||+... ..+.......+|+|++-++|..+|+.+-.||.|++||..+......+ .|...|+
T Consensus 33 ~Gr~va~~-a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 33 KGRAVAVS-ALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CCcEEEEe-ccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 47777663 3356999999766 33344455579999999999888999999999999999999776666 7999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCe
Q 001287 122 AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1107)
Q Consensus 122 ~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~ 201 (1107)
++.|+..|..|++|+.|+.|.+||+-.+.|. |++.+|. +.|+...|.. ....+++.+.|++
T Consensus 112 ~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl-----~rL~GHk------------d~iT~~~F~~--~~~~lvS~sKDs~ 172 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKDTDIIVWDLVGEEGL-----FRLRGHK------------DSITQALFLN--GDSFLVSVSKDSM 172 (888)
T ss_pred EEEEcccCceEeecCCCccEEEEEeccceee-----EEeecch------------HHHhHHhccC--CCeEEEEeccCce
Confidence 9999999999999999999999999765543 5688887 8899888844 4667889999999
Q ss_pred EEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 202 VILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 202 V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
|++||+++..+.. +..| +..|.+++.. + +.+++++.|+.+++|++.
T Consensus 173 iK~WdL~tqhCf~Thvd~------------------------------r~Eiw~l~~~-~--~~lvt~~~dse~~v~~L~ 219 (888)
T KOG0306|consen 173 IKFWDLETQHCFETHVDH------------------------------RGEIWALVLD-E--KLLVTAGTDSELKVWELA 219 (888)
T ss_pred EEEEecccceeeeEEecc------------------------------cceEEEEEEe-c--ceEEEEecCCceEEEEee
Confidence 9999999987754 5555 7889999964 3 889999999999999994
Q ss_pred CCCCCCC-ccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcC---ccccc--
Q 001287 281 TTASTKG-QQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE---WSSGM-- 354 (1107)
Q Consensus 281 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~---~~~~~-- 354 (1107)
....... ....+......+.. .+ ..+++.. +...+++++++.|.|. ++.+- ...+.
T Consensus 220 ~~~D~~~~~~~~s~~~~G~~~r-qs-k~R~i~l---------~~d~s~r~~~c~g~d~-------~~e~frI~s~~E~~k 281 (888)
T KOG0306|consen 220 FEDDEKETNRYISTKLRGTFIR-QS-KGREINL---------VTDFSDRFLVCQGADK-------VIELFRIRSKEEIAK 281 (888)
T ss_pred cccccccccccceeeccceeee-cc-CCceeEE---------eecCcccEEEEecchh-------hhhheeecCHHHHHH
Confidence 3211110 00001111111111 11 1122222 2555677888888775 33222 11100
Q ss_pred ---cccceeee----------------------eeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEecccee
Q 001287 355 ---ENLRCVSR----------------------VDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLT 409 (1107)
Q Consensus 355 ---~~~~~~~~----------------------~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~ 409 (1107)
+.++...+ -.......+.++.+.|... ....++. ..+..+..|....
T Consensus 282 ~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~-----~~~~lv~-l~nNtv~~ysl~~-- 353 (888)
T KOG0306|consen 282 ILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG-----TENTLVL-LANNTVEWYSLEN-- 353 (888)
T ss_pred HHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC-----cceeEEE-eecCceEEEEecc--
Confidence 00000000 0111122455566666532 1223333 4444454444211
Q ss_pred eeecccCCCCCCCCccCCcccccCCCceeEEEEEecc-----CCCCCchhhhHHHhhccccCCCCccCCccccccCCCCC
Q 001287 410 TLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLP-----FGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPS 484 (1107)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~ 484 (1107)
.......+.....+....|.+.|....+.... +....++.|..-.-+ .+ ..+.-+
T Consensus 354 -----s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k------ci------RTi~~~--- 413 (888)
T KOG0306|consen 354 -----SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK------CI------RTITCG--- 413 (888)
T ss_pred -----CCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc------ee------EEeccc---
Confidence 01011111333345666777777776664422 111222333221000 00 001111
Q ss_pred CCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEE
Q 001287 485 PVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1107)
Q Consensus 485 ~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~ 564 (1107)
-+-+..|-|..+++++|...|.+.++|+....+. -....|.++|+.|+.+||+..+++|+.|.+|++|+
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~-----------Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLV-----------ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWD 482 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhh-----------hhhhccccceeeeeecCCCCceEEecCCcEEEEEe
Confidence 2234467889999999999999999998877654 23568999999999999999999999999999999
Q ss_pred ecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecC
Q 001287 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI 644 (1107)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~ 644 (1107)
+.....+ +.+...+-.+.+ ...-.....|.|+++||||++||+|--|.+|+||=+.+-+.. -.+
T Consensus 483 f~l~~~~------~gt~~k~lsl~~-------~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf---lsL 546 (888)
T KOG0306|consen 483 FKLVVSV------PGTQKKVLSLKH-------TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF---LSL 546 (888)
T ss_pred EEEEecc------Ccccceeeeecc-------ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee---eee
Confidence 8754221 000000000100 011234678999999999999999999999999999987765 256
Q ss_pred CCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccceeeEEEEe
Q 001287 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVI 724 (1107)
Q Consensus 645 ~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~~~~~~~~ 724 (1107)
.||.-||.++..+ |+..++++|+.|.+|.||-.+-|.+-.+...
T Consensus 547 YGHkLPV~smDIS----------------------~DSklivTgSADKnVKiWGLdFGDCHKS~fA-------------- 590 (888)
T KOG0306|consen 547 YGHKLPVLSMDIS----------------------PDSKLIVTGSADKNVKIWGLDFGDCHKSFFA-------------- 590 (888)
T ss_pred cccccceeEEecc----------------------CCcCeEEeccCCCceEEeccccchhhhhhhc--------------
Confidence 8999999999998 7789999999999999999999888655411
Q ss_pred cCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecC-eeEEEecccccccc
Q 001287 725 EPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGN 803 (1107)
Q Consensus 725 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~-~l~v~sl~~~~~g~ 803 (1107)
|..++-.+-|-+. +.++.+|+.| .++-|.-..
T Consensus 591 ----------------------------------------HdDSvm~V~F~P~--~~~FFt~gKD~kvKqWDg~k----- 623 (888)
T KOG0306|consen 591 ----------------------------------------HDDSVMSVQFLPK--THLFFTCGKDGKVKQWDGEK----- 623 (888)
T ss_pred ----------------------------------------ccCceeEEEEccc--ceeEEEecCcceEEeechhh-----
Confidence 2222223334433 7899999988 999997776
Q ss_pred ceeeeeecCCCcceeeeeeecCCceeEEEEEeecCcEEEeecCC
Q 001287 804 NKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPD 847 (1107)
Q Consensus 804 ~~~i~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~ 847 (1107)
-..||+..-...=.|+..+. ++|..++....|-.|++|+--+
T Consensus 624 Fe~iq~L~~H~~ev~cLav~--~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 624 FEEIQKLDGHHSEVWCLAVS--PNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhheeeccchheeeeeEEc--CCCCeEEeccCCceeEeeeccC
Confidence 34566554333334544333 4577888888889999998777
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-33 Score=291.06 Aligned_cols=282 Identities=16% Similarity=0.179 Sum_probs=239.5
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecC--CCEEEEEcCCCcEEEEEeecC
Q 001287 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDAD 149 (1107)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~--~~~l~~g~~dg~V~vw~~d~~ 149 (1107)
.+-+.||..+.||.|+..|+++|-+|.++||+..+...++.+ +|.+.|.++.|+|. +.-|++++.||+|++|+++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 345679999999999999999999999999999999877766 89999999999998 468999999999999999864
Q ss_pred CCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE-EEEeCCcccccccccc
Q 001287 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVV 228 (1107)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~-~~~~g~~~~~~~~~~~ 228 (1107)
++++. +.+|. ..|..|+||| +|++|++++.|.+-++||++++.. ....||
T Consensus 252 --~~l~~---l~gH~------------~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGH---------- 302 (459)
T KOG0272|consen 252 --TPLQD---LEGHL------------ARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGH---------- 302 (459)
T ss_pred --cchhh---hhcch------------hhheeeeecC--CCceeeecccccchhhcccccchhhHhhccc----------
Confidence 34433 77776 7899999999 699999999999999999999865 445566
Q ss_pred CCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCcc
Q 001287 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRL 308 (1107)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (1107)
.+.|.+++|. +||..+++|+.|..-+|||+.++.. +
T Consensus 303 --------------------s~~v~~iaf~-~DGSL~~tGGlD~~~RvWDlRtgr~-----------i------------ 338 (459)
T KOG0272|consen 303 --------------------SKGVFSIAFQ-PDGSLAATGGLDSLGRVWDLRTGRC-----------I------------ 338 (459)
T ss_pred --------------------ccccceeEec-CCCceeeccCccchhheeecccCcE-----------E------------
Confidence 8889999997 9999999999999999999986510 0
Q ss_pred ceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCc
Q 001287 309 PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHK 388 (1107)
Q Consensus 309 ~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~ 388 (1107)
++..
T Consensus 339 ---------------------m~L~------------------------------------------------------- 342 (459)
T KOG0272|consen 339 ---------------------MFLA------------------------------------------------------- 342 (459)
T ss_pred ---------------------EEec-------------------------------------------------------
Confidence 0000
Q ss_pred ceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCC
Q 001287 389 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSH 468 (1107)
Q Consensus 389 ~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1107)
T Consensus 343 -------------------------------------------------------------------------------- 342 (459)
T KOG0272|consen 343 -------------------------------------------------------------------------------- 342 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEe-C
Q 001287 469 TQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-I 547 (1107)
Q Consensus 469 ~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp-d 547 (1107)
||..++..++++|+|..||||+.|+++||||+...... -.+.+|..-|+.+.|+| .
T Consensus 343 ------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l-----------y~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 343 ------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL-----------YTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred ------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccc-----------eecccccchhhheEecccC
Confidence 01111223378899999999999999999999877753 23668999999999999 7
Q ss_pred CCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeE
Q 001287 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1107)
Q Consensus 548 ~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V 627 (1107)
|.+|++++.|++++||.-.+. +++..+.+|.+.|.++++++|++++++++.|.++
T Consensus 400 g~fL~TasyD~t~kiWs~~~~-------------------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTW-------------------------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred CeEEEEcccCcceeeecCCCc-------------------------ccchhhcCCccceEEEEeccCCceEEEeccCcee
Confidence 889999999999999976553 6888899999999999999999999999999999
Q ss_pred EEEE
Q 001287 628 AVLD 631 (1107)
Q Consensus 628 ~iwd 631 (1107)
++|.
T Consensus 455 KLW~ 458 (459)
T KOG0272|consen 455 KLWR 458 (459)
T ss_pred eecc
Confidence 9995
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=290.06 Aligned_cols=283 Identities=19% Similarity=0.223 Sum_probs=243.2
Q ss_pred cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEE
Q 001287 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1107)
Q Consensus 116 ~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1107)
-..+|..+.|+.+++.+++|+.+|.++||.... ..+. .++.+|. ..|.++.|||..++..+++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~---~~l~gH~------------~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLL---QTLRGHT------------SRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCC--ccee---EEEeccc------------cceeeEEEccCCCccceee
Confidence 346899999999999999999999999999774 3444 3488887 8899999999855656999
Q ss_pred EECCCeEEEEEccCCEE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcE
Q 001287 196 AYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1107)
Q Consensus 196 ~~~dg~V~vwdl~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I 274 (1107)
++.||++++|++++... ..+.|| ..+|..+.|+ |+|++|+|++.|.+.
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~gH------------------------------~~RVs~VafH-PsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEGH------------------------------LARVSRVAFH-PSGKFLGTASFDSTW 285 (459)
T ss_pred eccCCceeeeccCCCcchhhhhcc------------------------------hhhheeeeec-CCCceeeecccccch
Confidence 99999999999999655 445666 7789999987 999999999999999
Q ss_pred EEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccc
Q 001287 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1107)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1107)
++||+.+....-
T Consensus 286 RlWD~~tk~ElL-------------------------------------------------------------------- 297 (459)
T KOG0272|consen 286 RLWDLETKSELL-------------------------------------------------------------------- 297 (459)
T ss_pred hhcccccchhhH--------------------------------------------------------------------
Confidence 999997651100
Q ss_pred cccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCC
Q 001287 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1107)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1107)
T Consensus 298 -------------------------------------------------------------------------------- 297 (459)
T KOG0272|consen 298 -------------------------------------------------------------------------------- 297 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001287 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1107)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~ 514 (1107)
+..||...+..+++++||.+++||+.|..=||||+.+
T Consensus 298 -------------------------------------------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt 334 (459)
T KOG0272|consen 298 -------------------------------------------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT 334 (459)
T ss_pred -------------------------------------------hhcccccccceeEecCCCceeeccCccchhheeeccc
Confidence 1122333334448889999999999999999999999
Q ss_pred CceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcce
Q 001287 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1107)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 594 (1107)
+.+. +-+.+|..+|..|+|+|+|..||+|+.|++++||++....
T Consensus 335 gr~i-----------m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~------------------------- 378 (459)
T KOG0272|consen 335 GRCI-----------MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS------------------------- 378 (459)
T ss_pred CcEE-----------EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc-------------------------
Confidence 9977 5688999999999999999999999999999999998862
Q ss_pred eEEEEeecCcCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCC
Q 001287 595 CRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSE 673 (1107)
Q Consensus 595 ~~~~~~~h~~~Vt~la~sp-~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~ 673 (1107)
++.+.-+|..-|+.|.|+| .|.+|++++.|++++||...+..++ +.+.||.+.|.++..+
T Consensus 379 ~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~---ksLaGHe~kV~s~Dis---------------- 439 (459)
T KOG0272|consen 379 ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL---KSLAGHEGKVISLDIS---------------- 439 (459)
T ss_pred cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc---hhhcCCccceEEEEec----------------
Confidence 3456678999999999999 7899999999999999999999888 7889999999999999
Q ss_pred CCCCCCCCccEEEEEcCCceEEEEe
Q 001287 674 REVPVNPAEEVIIVLFKDAKISIVG 698 (1107)
Q Consensus 674 ~~~~~~~~~~~L~s~s~Dg~v~v~d 698 (1107)
+++.++++++.|.++++|.
T Consensus 440 ------~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 ------PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ------cCCceEEEeccCceeeecc
Confidence 6688899999999999995
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-30 Score=287.32 Aligned_cols=602 Identities=13% Similarity=0.121 Sum_probs=361.6
Q ss_pred CCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC--cEEEEEcCCCe
Q 001287 35 PATASILAFDHIQRLLAIAT--LDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDN--EIQVWSLESRS 109 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs--~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~--~I~vWDl~s~~ 109 (1107)
...++|+||+++|+|+|+|- ....+++|++..- .+..+..|.-.|+|++|+|.+.|++|++..+ .|.||||....
T Consensus 78 Rk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~ 157 (1080)
T KOG1408|consen 78 RKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNS 157 (1080)
T ss_pred CcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcc
Confidence 44799999999999999998 4577999999554 4456778999999999999999999999865 48899998887
Q ss_pred eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc--C
Q 001287 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP--N 187 (1107)
Q Consensus 110 ~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P--~ 187 (1107)
...+-+....|++++|+.++.|+++.+ +..|+.|.++... -...|.-+++ ++..+........+.|+..- .
T Consensus 158 ~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~--KykdpiPl~g----Rs~~lg~lr~n~f~avaCg~gic 230 (1080)
T KOG1408|consen 158 SGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQS--KYKDPIPLPG----RSYFLGNLRFNEFLAVACGVGIC 230 (1080)
T ss_pred cccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccc--cccCCccccc----hhhhccccccchhhhhhhcCccc
Confidence 777777788999999999999988775 5568999998643 1111122222 11111111111111111100 0
Q ss_pred CCCCEEEEEECCCeEEEEEccCCEEE--EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 188 SSGNRVLIAYENALVILWDVSEAQII--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 188 ~~~~~ll~~~~dg~V~vwdl~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
.+.. ++-...|.+.-|. ..+++ ++. .+...-.|+|- ..++|
T Consensus 231 Aest--fait~qGhLvEFS--sRRLLDKWVq------------------------------cRTTnAnCIcV---s~r~I 273 (1080)
T KOG1408|consen 231 AEST--FAITAQGHLVEFS--SRRLLDKWVQ------------------------------CRTTNANCICV---SSRLI 273 (1080)
T ss_pred ccce--EEEecccceeeec--hhhhhhhhhh------------------------------hhccccceeee---ecceE
Confidence 0111 1111222221111 11110 000 01333456773 46899
Q ss_pred EEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEE
Q 001287 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltv 345 (1107)
++|+.+|.|++++..+......++..+... ..+..+ .+ ..-+.++....--+
T Consensus 274 ~cgCa~g~vrlFnp~tL~y~~Tlpr~halg------------~d~a~~----------~q-~~~~~s~~~~a~fP----- 325 (1080)
T KOG1408|consen 274 ACGCAKGMVRLFNPETLDYAGTLPRSHALG------------SDTANL----------SQ-PEPKNSESSPAIFP----- 325 (1080)
T ss_pred EEeeccceeeecCcchhhhccccccccccc------------cchhhc----------cc-ccccccccCcccCC-----
Confidence 999999999999988765433222111100 000000 00 00000111110000
Q ss_pred EEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCcc
Q 001287 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVE 425 (1107)
Q Consensus 346 l~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 425 (1107)
....+.|.+.. ..+..+.++-.+|+||.....+.-..
T Consensus 326 ------------------------D~IA~~Fdet~--------~klscVYndhSlYvWDvrD~~kvgk~----------- 362 (1080)
T KOG1408|consen 326 ------------------------DAIACQFDETT--------DKLSCVYNDHSLYVWDVRDVNKVGKC----------- 362 (1080)
T ss_pred ------------------------ceeEEEecCCC--------ceEEEEEcCceEEEEeccccccccce-----------
Confidence 11223333321 24667788888999996654321100
Q ss_pred CCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCC
Q 001287 426 FPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 505 (1107)
Q Consensus 426 ~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~Dg 505 (1107)
..+-+|..-|.-...++ .++.-| ..+.-|.+ -++|++.||
T Consensus 363 --~s~lyHS~ciW~Ve~~p---------------------------~nv~~~----------~~aclp~~-cF~TCSsD~ 402 (1080)
T KOG1408|consen 363 --SSMLYHSACIWDVENLP---------------------------CNVHSP----------TAACLPRG-CFTTCSSDG 402 (1080)
T ss_pred --eeeeeccceeeeecccc---------------------------ccccCc----------ccccCCcc-ceeEecCCC
Confidence 00111111111111000 000000 00122222 489999999
Q ss_pred cEEEEeCCCCceeEEEeecc---ce--------------------ee---eeecCCCCCeEEEEEEeCCCeEEEeccCce
Q 001287 506 SVRIWDATYPVFKLICALDA---EV--------------------QG---IEVAGSRAPVSTLSFCFINSSLAVGNEFGL 559 (1107)
Q Consensus 506 tIriWd~~~~~l~~~~~l~~---~~--------------------~~---~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~ 559 (1107)
+||+||+..+.-..+|.-+. +. ++ ...-+.+..|.+|+.||++++||+|+..|.
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 99999998744332221111 00 00 112355667999999999999999999999
Q ss_pred EEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCe
Q 001287 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS---GAKLAVGFECGRVAVLDMNLLS 636 (1107)
Q Consensus 560 V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~---~~~la~Gs~dg~V~iwd~~~~~ 636 (1107)
++||++....+ ......|...|.||.||.- .++||+++.|..|.|||+....
T Consensus 483 lrVy~Lq~l~~-------------------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 483 LRVYDLQELEY-------------------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred eEEEEehhhhh-------------------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 99999987532 2345789999999999952 4899999999999999998776
Q ss_pred EEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC----CcceecCCCCcc
Q 001287 637 VLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS----SENMISSSPWHL 712 (1107)
Q Consensus 637 ~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~----~g~~i~~~~~~~ 712 (1107)
.+. +++.+|++.|+++.|.-... ...+++++.|.+|. ++.. +|.+-.+.
T Consensus 538 ~l~--qtld~HSssITsvKFa~~gl--------------------n~~MiscGADksim-Fr~~qk~~~g~~f~r~---- 590 (1080)
T KOG1408|consen 538 DLV--QTLDGHSSSITSVKFACNGL--------------------NRKMISCGADKSIM-FRVNQKASSGRLFPRH---- 590 (1080)
T ss_pred chh--hhhcccccceeEEEEeecCC--------------------ceEEEeccCchhhh-eehhccccCceecccc----
Confidence 553 57789999999999994422 24588999997763 3322 13322111
Q ss_pred cccceeeEEEEecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecC-ee
Q 001287 713 KKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SV 791 (1107)
Q Consensus 713 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~-~l 791 (1107)
.....--.++-+ .. .+. ..|+++.|.| -|
T Consensus 591 t~t~~ktTlYDm-----------------------------~V-------------------dp~--~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 591 TQTLSKTTLYDM-----------------------------AV-------------------DPT--SKLVVTVCQDRNI 620 (1080)
T ss_pred ccccccceEEEe-----------------------------ee-------------------CCC--cceEEEEecccce
Confidence 000000111111 11 111 4578887766 99
Q ss_pred EEEeccccccccceeeeeecCC--CcceeeeeeecCCceeEEEEEeecCcEEEeecCCccccccccccceeeceecCccc
Q 001287 792 RLYSRKSVIQGNNKTVQKVKHK--NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMD 869 (1107)
Q Consensus 792 ~v~sl~~~~~g~~~~i~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~ 869 (1107)
|||.+.+. -++-..|.... .... -+.-||.+..||+-|+|.+|.+++..+-|.++.+. =|.-.+
T Consensus 621 rif~i~sg---Kq~k~FKgs~~~eG~lI---Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--------GHsE~V 686 (1080)
T KOG1408|consen 621 RIFDIESG---KQVKSFKGSRDHEGDLI---KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--------GHSEAV 686 (1080)
T ss_pred EEEecccc---ceeeeecccccCCCceE---EEEECCCccEEEEeecCCceEEEEeccchhhhhhc--------Ccchhe
Confidence 99998873 22222222211 1111 12235889999999999999999999999999882 245667
Q ss_pred cccccc-CCc-EEEEcCceeEEEEeecCCCceecccCCcc
Q 001287 870 KTISAD-NGQ-ITLANGSEVAFVNLLAGENEFSILESSPC 907 (1107)
Q Consensus 870 ~~~~~s-~Gq-~~l~~~~e~~~~s~~~~~~~~~~~~s~~~ 907 (1107)
+.+-|+ |.. +|=|.|++..||.-+..+|+.|...-++.
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~m~~r~~~ 726 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIRMVNRNGR 726 (1080)
T ss_pred eeeeecccchhheeecCCceEEEEECchhHhHHHHHHhhH
Confidence 888999 875 77788899999998888888776655543
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=7e-29 Score=275.70 Aligned_cols=548 Identities=13% Similarity=0.114 Sum_probs=315.3
Q ss_pred eeeecCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEeCCCccee---eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEE
Q 001287 28 IAVHYGIPATASILAFDHIQR---LLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~~---~LA~Gs~dg~I~iw~~~~~~~~---~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~ 101 (1107)
.+..-||...|+|+.+=|... ++++|+.||+|++|.+...... .+.+| .+.++++........+.+.|+.+.
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~--~~~~~cv~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH--CKECVCVVARSSVMTCKAADGTVS 124 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCc--ceeEEEEEeeeeEEEeeccCceEE
Confidence 455679999999999988877 8999999999999998633222 23333 455555665433333336899999
Q ss_pred EEEcCCCee--eeee-------------------------------------------------ccCCCeEEEEEecCC-
Q 001287 102 VWSLESRSL--ACCL-------------------------------------------------KWESNITAFSVISGS- 129 (1107)
Q Consensus 102 vWDl~s~~~--~~~~-------------------------------------------------~~~~~Vt~l~~~~~~- 129 (1107)
+||.+..++ +..+ +|..-|.+++|...+
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 999854441 1110 122345555555332
Q ss_pred --CEEEEEcCCCcEEEEEeecCC--Cc---------ee---------ecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 130 --HFMYIGDENGLMSVIKYDADE--GK---------LF---------QLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 130 --~~l~~g~~dg~V~vw~~d~~~--~~---------l~---------~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
-+|+++++|..|+||++...+ .. +. ...|.+.-+. .-.+|.++|+++.|||
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea------ll~GHeDWV~sv~W~p- 277 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA------LLMGHEDWVYSVWWHP- 277 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh------hhcCcccceEEEEEcc-
Confidence 378899999999999976432 10 00 0001111111 1135669999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 188 ~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
.+..|++++.|.++.+|-..+..-++.-..+..++. +. .....+..|+ |+++.|++
T Consensus 278 -~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-------g~---------------a~GF~g~lw~-~n~~~ii~ 333 (764)
T KOG1063|consen 278 -EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-------GS---------------AGGFWGGLWS-PNSNVIIA 333 (764)
T ss_pred -chhhheecccCcceEEEecCCccceEEEEEEeeccc-------cc---------------ccceeeEEEc-CCCCEEEE
Confidence 566699999999999999887755443322222221 00 2235556776 99999999
Q ss_pred EEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEE
Q 001287 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1107)
Q Consensus 268 g~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~ 347 (1107)
.+..|.+++|...+.. . | ...+++..|..+..+++-.+.|.+|++.|.|. .-+
T Consensus 334 ~g~~Gg~hlWkt~d~~-------------~--w-----~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ-------TTR 386 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKT-------------F--W-----TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ-------TTR 386 (764)
T ss_pred ecccCcEEEEeccCcc-------------c--e-----eeccccccccccceeeeecCCCCEEEEecccc-------cee
Confidence 9999999999933211 1 1 01122222333333233344566777777775 222
Q ss_pred cCccccc-cccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEE-ccCCeEEEEeccceeeee--c-----ccCCC
Q 001287 348 LEWSSGM-ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVL-TSPGQLHFYDNASLTTLL--S-----QQEKK 418 (1107)
Q Consensus 348 l~~~~~~-~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl-~~~G~l~~~d~~~~~~~~--~-----~~~~~ 418 (1107)
+-..-+. .......| +--....+.++.+.+.. ..++. ....-+.+|+........ . ..+..
T Consensus 387 lFa~wg~q~~wHEiaR-PQiHGyDl~c~~~vn~~---------~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~ 456 (764)
T KOG1063|consen 387 LFARWGRQQEWHEIAR-PQIHGYDLTCLSFVNED---------LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSD 456 (764)
T ss_pred eecccccccceeeecc-cccccccceeeehccCC---------ceeeecccceeeeeecCcHHHHHHHHHHhCccccCch
Confidence 2111110 00000000 00001122222222210 11111 111122222221110000 0 00000
Q ss_pred CCCC-CccCCcccccCCCcee-----EEEEEeccCCCCCchhhhHHHhhccccCCCCccCCcccccc---CCCCCCCCcc
Q 001287 419 PSVC-PVEFPGVIPISDPIMT-----VAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLS---GGVPSPVPIT 489 (1107)
Q Consensus 419 ~~~~-~~~~~~~~~~~~~~it-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~---gg~~~~~~~~ 489 (1107)
..+. +......+ ...++. .........+..+. ........-..+..+..++.||-. -||..++.++
T Consensus 457 ~~p~gA~VpaLGL--SnKa~~~~e~~~G~~~~~~~et~~~---~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l 531 (764)
T KOG1063|consen 457 ELPDGANVPALGL--SNKAFFPGETNTGGEAAVCAETPLA---AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYAL 531 (764)
T ss_pred hcccccccccccc--cCCCCcccccccccccceeeecccc---cCchhccCCChHHHHHHhccchhhHHhccCceeEEEE
Confidence 0000 00000000 000000 00000000000000 000000001112345567888833 3677777888
Q ss_pred ccCCCCcEEEEEecCCc-----EEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEE
Q 001287 490 KCHSVDRVYLAGYHDGS-----VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1107)
Q Consensus 490 ~~s~~~~~laTgs~Dgt-----IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~ 564 (1107)
+.+|+++++||++.... |++|+..+.... ..+.+|+..||.|+||||+++|++.++|.++.+|.
T Consensus 532 ~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-----------~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 532 AISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-----------QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EecCCCCEEeehhhhCCccceEEEEEeccchhhh-----------heecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 99999999999976544 999999887744 34789999999999999999999999999999999
Q ss_pred ecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--eEEEEee
Q 001287 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL--SVLFFTD 642 (1107)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~--~~~~~~~ 642 (1107)
....... . - -....+.|+.-|++..|+|+++++|++|+|.+|+||..... ..+.+.
T Consensus 601 ~~~~~~~-e-----------------~---~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~- 658 (764)
T KOG1063|consen 601 VQEDIKD-E-----------------F---RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF- 658 (764)
T ss_pred eecccch-h-----------------h---hhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh-
Confidence 8543211 0 0 02235689999999999999999999999999999999877 333222
Q ss_pred cCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 643 ~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
....+..+|+.++|.+.... ....++++|.+.|.|++|...
T Consensus 659 a~~~~~~aVTAv~~~~~~~~-----------------e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 659 ACLKFSLAVTAVAYLPVDHN-----------------EKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred chhccCCceeeEEeeccccc-----------------cccceEEEEecccEEEEEecc
Confidence 23458999999999966443 224588999999999999843
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=4.2e-29 Score=251.58 Aligned_cols=290 Identities=13% Similarity=0.191 Sum_probs=238.6
Q ss_pred eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccC-CCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~-~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
..+.+|.+.|.++.|++|+++|+|+|+||.+.|||.-+....+.+..+ .-|..++|+|.++++++|+-|+...|+++..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 578899999999999999999999999999999999888877777655 5799999999999999999999999999885
Q ss_pred C--CCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccc
Q 001287 149 D--EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKD 225 (1107)
Q Consensus 149 ~--~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~ 225 (1107)
. ++.. +..-.+++|. +.+.|..|-+ ++. |++++.|.+..+||+++++.+. +.||
T Consensus 129 ~d~~g~~-~v~r~l~gHt------------gylScC~f~d--D~~-ilT~SGD~TCalWDie~g~~~~~f~GH------- 185 (343)
T KOG0286|consen 129 RDAEGNV-RVSRELAGHT------------GYLSCCRFLD--DNH-ILTGSGDMTCALWDIETGQQTQVFHGH------- 185 (343)
T ss_pred ccccccc-eeeeeecCcc------------ceeEEEEEcC--CCc-eEecCCCceEEEEEcccceEEEEecCC-------
Confidence 4 2222 2223477777 8899999944 554 9999999999999999997765 5566
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceeEEEeecC-CCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccc
Q 001287 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSA 304 (1107)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp-dg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (1107)
.+.|.++... | +++.+++|+.|+..++||+..+...+
T Consensus 186 -----------------------~gDV~slsl~-p~~~ntFvSg~cD~~aklWD~R~~~c~q------------------ 223 (343)
T KOG0286|consen 186 -----------------------TGDVMSLSLS-PSDGNTFVSGGCDKSAKLWDVRSGQCVQ------------------ 223 (343)
T ss_pred -----------------------cccEEEEecC-CCCCCeEEecccccceeeeeccCcceeE------------------
Confidence 7789999964 7 99999999999999999997441000
Q ss_pred cCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCC
Q 001287 305 ERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATV 384 (1107)
Q Consensus 305 ~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~ 384 (1107)
T Consensus 224 -------------------------------------------------------------------------------- 223 (343)
T KOG0286|consen 224 -------------------------------------------------------------------------------- 223 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccc
Q 001287 385 GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKL 464 (1107)
Q Consensus 385 ~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1107)
T Consensus 224 -------------------------------------------------------------------------------- 223 (343)
T KOG0286|consen 224 -------------------------------------------------------------------------------- 223 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEE
Q 001287 465 HSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSF 544 (1107)
Q Consensus 465 ~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~f 544 (1107)
...||...++.+.|.|+|.-++||+.|++.|+||+....-..+|.- ..-..+|++++|
T Consensus 224 -------------tF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---------~~~~~gitSv~F 281 (343)
T KOG0286|consen 224 -------------TFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---------DSIICGITSVAF 281 (343)
T ss_pred -------------eecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---------CcccCCceeEEE
Confidence 0012333445557888999999999999999999998774433331 123358999999
Q ss_pred EeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCC
Q 001287 545 CFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC 624 (1107)
Q Consensus 545 spd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~d 624 (1107)
|..|++|..|-.|..+.|||.-... .+..+.+|...|+||..+|||.-+|+|+.|
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~e-------------------------~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKGE-------------------------RVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cccccEEEeeecCCceeEeeccccc-------------------------eEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 9999999999999999999976652 356778999999999999999999999999
Q ss_pred CeEEEEE
Q 001287 625 GRVAVLD 631 (1107)
Q Consensus 625 g~V~iwd 631 (1107)
.+++||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=254.26 Aligned_cols=342 Identities=13% Similarity=0.151 Sum_probs=267.7
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 001287 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 26 ~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWD 104 (1107)
--.....+|...+-+++.+|+.+++|+|+.|..-.||+....+ ...+.+|...|+++.|+.+|.+|+++.-+|.|+||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 3355567999999999999999999999999999999996554 457889999999999999999999999999999999
Q ss_pred cCCCeeeeeec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEE
Q 001287 105 LESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1107)
Q Consensus 105 l~s~~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1107)
..++.....+. .-..|.-+.|+|....|+.|+.||++.+|.+... ...++ +.+|. .++++=.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--~~~kv---~~Gh~------------~~ct~G~ 197 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--ALCKV---MSGHN------------SPCTCGE 197 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--ceeeE---ecCCC------------CCccccc
Confidence 99998877774 5578899999999999999999999988887753 44443 67776 7899999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC
Q 001287 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1107)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1107)
|.| +|+++++++.||+|++||..++.++...... +..+.+++.. +..+.
T Consensus 198 f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~----------------------------e~~~~~~~~~-~~~~~ 246 (399)
T KOG0296|consen 198 FIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQA----------------------------EGLELPCISL-NLAGS 246 (399)
T ss_pred ccC--CCceEEEEecCceEEEEecCCCceeEEeccc----------------------------ccCcCCcccc-ccccc
Confidence 988 6999999999999999999999887654321 1334555664 37788
Q ss_pred EEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceE
Q 001287 264 ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVL 343 (1107)
Q Consensus 264 ~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~l 343 (1107)
.++.|..+|.+.+-+..+++... ....+. .
T Consensus 247 ~~~~g~~e~~~~~~~~~sgKVv~------------~~n~~~-------------------------------~------- 276 (399)
T KOG0296|consen 247 TLTKGNSEGVACGVNNGSGKVVN------------CNNGTV-------------------------------P------- 276 (399)
T ss_pred eeEeccCCccEEEEccccceEEE------------ecCCCC-------------------------------c-------
Confidence 88999988888876655431000 000000 0
Q ss_pred EEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCC
Q 001287 344 TVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCP 423 (1107)
Q Consensus 344 tvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~ 423 (1107)
.+.
T Consensus 277 -~l~---------------------------------------------------------------------------- 279 (399)
T KOG0296|consen 277 -ELK---------------------------------------------------------------------------- 279 (399)
T ss_pred -ccc----------------------------------------------------------------------------
Confidence 000
Q ss_pred ccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEec
Q 001287 424 VEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYH 503 (1107)
Q Consensus 424 ~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~ 503 (1107)
+-++..+.+..++ ..+..=.+.|+|+-
T Consensus 280 -------~~~e~~~esve~~----------------------------------------------~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 280 -------PSQEELDESVESI----------------------------------------------PSSSKLPLAACGSV 306 (399)
T ss_pred -------ccchhhhhhhhhc----------------------------------------------ccccccchhhcccc
Confidence 0000001111111 11122227899999
Q ss_pred CCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCc
Q 001287 504 DGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSE 583 (1107)
Q Consensus 504 DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~ 583 (1107)
||+|-|||+....++. .-.|..+|+.+.|-+ ..+|++++.+|.|+.||-++.
T Consensus 307 dG~i~iyD~a~~~~R~------------~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG--------------- 358 (399)
T KOG0296|consen 307 DGTIAIYDLAASTLRH------------ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG--------------- 358 (399)
T ss_pred cceEEEEecccchhhe------------eccCCCceEEEEEcC-cchheeeccCceEEeeecccc---------------
Confidence 9999999999988772 336777899999999 889999999999999999887
Q ss_pred ceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001287 584 VHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1107)
Q Consensus 584 ~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~ 633 (1107)
+++.++.+|+..|.+++++|+.+++++++.|++.+||++.
T Consensus 359 ----------~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 ----------QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ----------ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 5788999999999999999999999999999999999864
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=248.68 Aligned_cols=215 Identities=17% Similarity=0.229 Sum_probs=181.0
Q ss_pred CCcccccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-cceeeeCCCCCCEEEEEEEeCCCEEEEEe
Q 001287 17 GSLTAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISIT 95 (1107)
Q Consensus 17 ~~l~~~~~~~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~L~S~s 95 (1107)
+.+..-.+..| ....||-+.|.++.|++|.++|++++.||.+.|||.-+ .++..+.--..+|..++|+|.+.++++++
T Consensus 38 ~~~~~i~~~~r-r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 38 ESVGRIQMRTR-RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred ccceeeeeeeE-EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC
Confidence 34444455555 34469999999999999999999999999999999843 34444555678999999999999999999
Q ss_pred CCCcEEEEEcCCC--e----eeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccc
Q 001287 96 NDNEIQVWSLESR--S----LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1107)
Q Consensus 96 ~d~~I~vWDl~s~--~----~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1107)
-|+...|+++.++ + ....+ .|.+-+.|+.|-. ..+|++|+.|.++-+||++. +...+. +.+|.
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~--g~~~~~---f~GH~---- 186 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET--GQQTQV---FHGHT---- 186 (343)
T ss_pred cCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc--ceEEEE---ecCCc----
Confidence 9999999999876 2 22333 7889999999987 77899999999999999885 555543 77887
Q ss_pred cCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
+.|.++.+.|+ +++.+++|+-|+..+|||++++..++ +.||
T Consensus 187 --------gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh----------------------------- 228 (343)
T KOG0286|consen 187 --------GDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH----------------------------- 228 (343)
T ss_pred --------ccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeeccc-----------------------------
Confidence 88999999997 77789999999999999999997755 5667
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
+..|.+++|+ |+|.-+++|+.|++.++||+...
T Consensus 229 -esDINsv~ff-P~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 229 -ESDINSVRFF-PSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred -ccccceEEEc-cCCCeeeecCCCceeEEEeecCC
Confidence 8889999998 99999999999999999999754
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=8.4e-29 Score=264.04 Aligned_cols=323 Identities=16% Similarity=0.221 Sum_probs=256.2
Q ss_pred CCCCCCEEEEEEEeCCC-EEEEEeCCCcEEEEEcCCC--eee-------------eeeccCCCeEEEEEecCCCEEEEEc
Q 001287 73 SPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESR--SLA-------------CCLKWESNITAFSVISGSHFMYIGD 136 (1107)
Q Consensus 73 ~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~vWDl~s~--~~~-------------~~~~~~~~Vt~l~~~~~~~~l~~g~ 136 (1107)
.+|+.+|.+.+|.|-.. .|++++.|-..++|++... ... ....-...||+++|+.+|..|++|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999544 8899999999999998751 111 1111225799999999999999999
Q ss_pred CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 137 ~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
.+|.++||+.+ |.+... +..|. ++|.++.|+- .|++|++++-|+++.+||..++.+.+.+
T Consensus 255 ~~G~~riw~~~---G~l~~t---l~~Hk------------gPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 255 EDGEARIWNKD---GNLIST---LGQHK------------GPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred cCcEEEEEecC---chhhhh---hhccC------------CceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEee
Confidence 99999999987 455533 55565 8999999954 7999999999999999999999887655
Q ss_pred CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCce
Q 001287 217 GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNV 296 (1107)
Q Consensus 217 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~ 296 (1107)
.. + ..+-..+.|. +...+++.+.||.|+++.+...
T Consensus 315 ~~---------~--------------------s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~-------------- 349 (524)
T KOG0273|consen 315 EF---------H--------------------SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED-------------- 349 (524)
T ss_pred ee---------c--------------------cCCccceEEe--cCceEeecCCCceEEEEEecCC--------------
Confidence 32 1 2222346786 4567899999999999877422
Q ss_pred eeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEE
Q 001287 297 VKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMIL 376 (1107)
Q Consensus 297 ~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~ 376 (1107)
.|+..
T Consensus 350 -----------~P~~t---------------------------------------------------------------- 354 (524)
T KOG0273|consen 350 -----------RPVKT---------------------------------------------------------------- 354 (524)
T ss_pred -----------Cccee----------------------------------------------------------------
Confidence 11111
Q ss_pred ccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhh
Q 001287 377 LSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLS 456 (1107)
Q Consensus 377 ~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~ 456 (1107)
T Consensus 355 -------------------------------------------------------------------------------- 354 (524)
T KOG0273|consen 355 -------------------------------------------------------------------------------- 354 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCC
Q 001287 457 EIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR 536 (1107)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~ 536 (1107)
..| |.++++++.+.|.+.+|+|++.|+|++||........ ..+..|.
T Consensus 355 ---------------------~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~-----------~~l~~Hs 401 (524)
T KOG0273|consen 355 ---------------------FIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV-----------HDLQAHS 401 (524)
T ss_pred ---------------------eec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch-----------hhhhhhc
Confidence 111 2233344455667779999999999999997766644 4688999
Q ss_pred CCeEEEEEEeCC---------CeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEE
Q 001287 537 APVSTLSFCFIN---------SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR 607 (1107)
Q Consensus 537 ~~Vt~l~fspd~---------~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt 607 (1107)
..|..+.|+|+| ..|++++.|++|++|+.... .|+.+|..|..+|.
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------------------v~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------------------VPIHTLMKHQEPVY 456 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------------------ceeEeeccCCCceE
Confidence 999999999876 36899999999999999886 57889999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEE
Q 001287 608 ALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIV 687 (1107)
Q Consensus 608 ~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s 687 (1107)
+|+|||+|+++|+|+.||.|.||+++.+.++ +.+. -...|..|+|+ ..++.|.+
T Consensus 457 svafS~~g~ylAsGs~dg~V~iws~~~~~l~---~s~~-~~~~Ifel~Wn----------------------~~G~kl~~ 510 (524)
T KOG0273|consen 457 SVAFSPNGRYLASGSLDGCVHIWSTKTGKLV---KSYQ-GTGGIFELCWN----------------------AAGDKLGA 510 (524)
T ss_pred EEEecCCCcEEEecCCCCeeEeccccchhee---Eeec-CCCeEEEEEEc----------------------CCCCEEEE
Confidence 9999999999999999999999999999988 3432 45669999999 44788999
Q ss_pred EcCCceEEEEeC
Q 001287 688 LFKDAKISIVGG 699 (1107)
Q Consensus 688 ~s~Dg~v~v~d~ 699 (1107)
+-+|+.++|.|.
T Consensus 511 ~~sd~~vcvldl 522 (524)
T KOG0273|consen 511 CASDGSVCVLDL 522 (524)
T ss_pred EecCCCceEEEe
Confidence 999999999996
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.3e-28 Score=260.75 Aligned_cols=335 Identities=19% Similarity=0.270 Sum_probs=257.8
Q ss_pred eeecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCC------cceeeeC---------CCCCCEEEEEEEeCCCEEE
Q 001287 29 AVHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDG------IEGLLIS---------PSQLPYKNLEFLQNQGFLI 92 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~-~LA~Gs~dg~I~iw~~~~------~~~~~~~---------~h~~~V~~l~fs~d~~~L~ 92 (1107)
+.--+|.+.|.+.+|.|-.. +||+|+.|-..++|++.. .+..+.+ +.+..|++|+|+.+|..|+
T Consensus 172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 34445889999999999877 999999999999999853 1111111 1234799999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCC
Q 001287 93 SITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1107)
Q Consensus 93 S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1107)
+++.||.+++|+...+.......|.++|.++.|+..+.|+++++.||++.+|+.-. ++..+. ++-|.
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~--g~~~q~---f~~~s-------- 318 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT--GTVKQQ---FEFHS-------- 318 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC--ceEEEe---eeecc--------
Confidence 99999999999999888877779999999999999999999999999999998654 454443 44333
Q ss_pred CCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE-EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
.+-..|.|.- +.. +++.+.||.|+|+-+...+++ .+.|| .++
T Consensus 319 ----~~~lDVdW~~--~~~-F~ts~td~~i~V~kv~~~~P~~t~~GH------------------------------~g~ 361 (524)
T KOG0273|consen 319 ----APALDVDWQS--NDE-FATSSTDGCIHVCKVGEDRPVKTFIGH------------------------------HGE 361 (524)
T ss_pred ----CCccceEEec--Cce-EeecCCCceEEEEEecCCCcceeeecc------------------------------cCc
Confidence 3335677843 444 999999999999999887664 46667 889
Q ss_pred eeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEE
Q 001287 252 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFV 331 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv 331 (1107)
|.++-|. |.|..|++++.|+++++|++...... ..+.. +...|..+
T Consensus 362 V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~-----------~~l~~----Hskei~t~------------------ 407 (524)
T KOG0273|consen 362 VNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSV-----------HDLQA----HSKEIYTI------------------ 407 (524)
T ss_pred eEEEEEC-CCCceEEEecCCCeeEeeecCCCcch-----------hhhhh----hccceeeE------------------
Confidence 9999997 99999999999999999998643110 00000 00011111
Q ss_pred EeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeee
Q 001287 332 YGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTL 411 (1107)
Q Consensus 332 ~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~ 411 (1107)
.++|..
T Consensus 408 -------------------------------------------~wsp~g------------------------------- 413 (524)
T KOG0273|consen 408 -------------------------------------------KWSPTG------------------------------- 413 (524)
T ss_pred -------------------------------------------eecCCC-------------------------------
Confidence 111110
Q ss_pred ecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCcccc
Q 001287 412 LSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKC 491 (1107)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~ 491 (1107)
|.+ ..
T Consensus 414 -----------------------------------------------------------------~v~----------~n 418 (524)
T KOG0273|consen 414 -----------------------------------------------------------------PVT----------SN 418 (524)
T ss_pred -----------------------------------------------------------------Ccc----------CC
Confidence 000 11
Q ss_pred CCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCC
Q 001287 492 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 571 (1107)
Q Consensus 492 s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~ 571 (1107)
...+..+++++.|++|++||+..+.+. ..+-.|..+|.+|+|+|++++||+|+.||.|.||......
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv~i-----------~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-- 485 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGVPI-----------HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-- 485 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCcee-----------EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh--
Confidence 123348999999999999999998866 4577899999999999999999999999999999988762
Q ss_pred ccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001287 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1107)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~ 633 (1107)
.+..+ .-.+.|..|+|+.+|.+|+....||.|++.|++
T Consensus 486 -----------------------l~~s~-~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 486 -----------------------LVKSY-QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -----------------------eeEee-cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 23333 345669999999999999999999999999985
No 21
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=3.1e-26 Score=245.76 Aligned_cols=409 Identities=17% Similarity=0.216 Sum_probs=281.7
Q ss_pred eeeec-CCCCCeEEEEEcCCCCEEEEEECCC--------cEEEEeCCCccee-eeCCCCCCEEEEEEEe-C-CCEEEEEe
Q 001287 28 IAVHY-GIPATASILAFDHIQRLLAIATLDG--------RIKVIGGDGIEGL-LISPSQLPYKNLEFLQ-N-QGFLISIT 95 (1107)
Q Consensus 28 ~~~~~-G~~~~i~~lafsp~~~~LA~Gs~dg--------~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~-d-~~~L~S~s 95 (1107)
...|| ||...|.||+.+|+.-++|+|-..| .++|||......+ .+......|.|++|++ + |.+|....
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 34555 9999999999999999999987766 4999997554444 2334566899999998 4 34555544
Q ss_pred --CCCcEEEEEcCCCeeeeeec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCC
Q 001287 96 --NDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1107)
Q Consensus 96 --~d~~I~vWDl~s~~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1107)
.+..+.|||++.+..+.... ....|....|+|...-+.+.+..|.++.|.+.. +.+.+..-.+..+++
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~--~~l~k~~~~fek~ek------- 246 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG--GSLVKRQGIFEKREK------- 246 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC--CceEEEeeccccccc-------
Confidence 35569999999987765553 445688899999999888888999999997764 445443222332221
Q ss_pred CCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
..|.|++|.+ +|+ +++|.++|.|.||+..+.++.. ...| ++.
T Consensus 247 ----k~Vl~v~F~e--ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH------------------------------~gg 289 (626)
T KOG2106|consen 247 ----KFVLCVTFLE--NGD-VITGDSGGNILIWSKGTNRISKQVHAH------------------------------DGG 289 (626)
T ss_pred ----eEEEEEEEcC--CCC-EEeecCCceEEEEeCCCceEEeEeeec------------------------------CCc
Confidence 5699999976 677 9999999999999998876632 3344 889
Q ss_pred eeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEE
Q 001287 252 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFV 331 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv 331 (1107)
|-++|-. .+|. |++|+.|..|..||- ... +...+.++. ...+++.+ ....+. ++
T Consensus 290 v~~L~~l-r~Gt-llSGgKDRki~~Wd~-~y~-----------k~r~~elPe--~~G~iRtv---------~e~~~d-i~ 343 (626)
T KOG2106|consen 290 VFSLCML-RDGT-LLSGGKDRKIILWDD-NYR-----------KLRETELPE--QFGPIRTV---------AEGKGD-IL 343 (626)
T ss_pred eEEEEEe-cCcc-EeecCccceEEeccc-ccc-----------ccccccCch--hcCCeeEE---------ecCCCc-EE
Confidence 9999965 7775 566999999999992 211 111111111 12233333 111111 22
Q ss_pred EeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeee
Q 001287 332 YGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTL 411 (1107)
Q Consensus 332 ~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~ 411 (1107)
.|... +.+..-.....
T Consensus 344 vGTtr-------------------------------------------------------------N~iL~Gt~~~~--- 359 (626)
T KOG2106|consen 344 VGTTR-------------------------------------------------------------NFILQGTLENG--- 359 (626)
T ss_pred Eeecc-------------------------------------------------------------ceEEEeeecCC---
Confidence 22111 11111000000
Q ss_pred ecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCcccc
Q 001287 412 LSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKC 491 (1107)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~ 491 (1107)
.+ +..-||..+..-++.
T Consensus 360 -------------------------f~--------------------------------------~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 360 -------------------------FT--------------------------------------LTVQGHGDELWGLAT 376 (626)
T ss_pred -------------------------ce--------------------------------------EEEEecccceeeEEc
Confidence 00 111223334445578
Q ss_pred CCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCC
Q 001287 492 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 571 (1107)
Q Consensus 492 s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~ 571 (1107)
+|+.++|+|+++|+.+++|+ ...+... ..+ ..++.|++|+|.| .+|.|...|...|.|..+.
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~k~~wt---------~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~--- 438 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DHKLEWT---------KII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ--- 438 (626)
T ss_pred CCChhheeeccCcceEEEcc--CCceeEE---------EEe---cCceeEeeccCcc-eEEEeeccceEEEEecccc---
Confidence 89999999999999999999 2232211 111 1379999999999 9999999999999988774
Q ss_pred ccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-eEEEEeecCCCCCCc
Q 001287 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL-SVLFFTDDISGSSSP 650 (1107)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~-~~~~~~~~~~~h~~~ 650 (1107)
-.......+.++++++|+|+|.+||+|+.|+.|+||-+... ...-..... |.++
T Consensus 439 -----------------------~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ 493 (626)
T KOG2106|consen 439 -----------------------DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSP 493 (626)
T ss_pred -----------------------eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCce
Confidence 12333444899999999999999999999999999998543 333333333 3399
Q ss_pred eEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 651 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 651 V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
|+.|.|+ +++++|.+-+-|-.|..|...
T Consensus 494 ithLDwS----------------------~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 494 ITHLDWS----------------------SDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred eEEeeec----------------------CCCceEEeccCceEEEEEccc
Confidence 9999999 568899999999999999554
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=9.8e-28 Score=236.29 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=149.1
Q ss_pred CCEEEEEECCCcEEEEeCCCcceeeeCCC-CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee--eeee-ccCCCeEE
Q 001287 47 QRLLAIATLDGRIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL--ACCL-KWESNITA 122 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h-~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~--~~~~-~~~~~Vt~ 122 (1107)
.-+||+++.|.+||+|......+.....| .+-|..|+..|+++.|++++ .-.|+++|+.++.. +.++ .|...|++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 35899999999999999976666655555 45899999999988888887 56799999999854 4555 67799999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeE
Q 001287 123 FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALV 202 (1107)
Q Consensus 123 l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V 202 (1107)
+.|..++++|++|++||+++||++... ... ..|..+ .+|++|..||. ...|+++..+|.|
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~--~~q-R~~~~~---------------spVn~vvlhpn--QteLis~dqsg~i 148 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQ-RNYQHN---------------SPVNTVVLHPN--QTELISGDQSGNI 148 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCc--ccc-hhccCC---------------CCcceEEecCC--cceEEeecCCCcE
Confidence 999999999999999999999998752 111 113333 78999999995 4449999999999
Q ss_pred EEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 203 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 203 ~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
++||+.+..+....-. +....|+++.-. |||++|+.+...|..++|++-+
T Consensus 149 rvWDl~~~~c~~~liP----------------------------e~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIP----------------------------EDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred EEEEccCCccccccCC----------------------------CCCcceeeEEEc-CCCcEEEEecCCccEEEEEccC
Confidence 9999998755332211 115678999965 9999999999999999999864
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=234.34 Aligned_cols=298 Identities=13% Similarity=0.153 Sum_probs=235.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeccC-CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 89 GFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~~~~~~~~~-~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
-+|+|++.|.+|++|...+|.+..+++|. +.|..+.+.|+++.|++++.- .|+++|+.......+ ..+.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv---~t~e~h~--- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPV---ATFEGHT--- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCce---eEEeccC---
Confidence 57999999999999999999999999876 689999999999999988754 489999886544333 3366665
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
..|++|.|+- +|..+++|+.||+++|||++...+...+.|
T Consensus 84 ---------kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR~~~~----------------------------- 123 (311)
T KOG0315|consen 84 ---------KNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQRNYQH----------------------------- 123 (311)
T ss_pred ---------CceEEEEEee--cCeEEEecCCCceEEEEeccCcccchhccC-----------------------------
Confidence 7799999965 899999999999999999999766666665
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCc
Q 001287 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDG 327 (1107)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~ 327 (1107)
..+|++++-+ |+...|++|..+|.|++||+....... .
T Consensus 124 -~spVn~vvlh-pnQteLis~dqsg~irvWDl~~~~c~~-------------~--------------------------- 161 (311)
T KOG0315|consen 124 -NSPVNTVVLH-PNQTELISGDQSGNIRVWDLGENSCTH-------------E--------------------------- 161 (311)
T ss_pred -CCCcceEEec-CCcceEEeecCCCcEEEEEccCCcccc-------------c---------------------------
Confidence 7789999966 999999999999999999996431000 0
Q ss_pred eEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccc
Q 001287 328 RLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNAS 407 (1107)
Q Consensus 328 ~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~ 407 (1107)
+.|+.
T Consensus 162 ------------------------------------------------liPe~--------------------------- 166 (311)
T KOG0315|consen 162 ------------------------------------------------LIPED--------------------------- 166 (311)
T ss_pred ------------------------------------------------cCCCC---------------------------
Confidence 00000
Q ss_pred eeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCC
Q 001287 408 LTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVP 487 (1107)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~ 487 (1107)
+ ..+.
T Consensus 167 --------------------------~-------------------------------------------------~~i~ 171 (311)
T KOG0315|consen 167 --------------------------D-------------------------------------------------TSIQ 171 (311)
T ss_pred --------------------------C-------------------------------------------------ccee
Confidence 0 0001
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecC
Q 001287 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 488 ~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~ 567 (1107)
.+.+.+||..++.+..-|+..+|++.+......+.- + ..+..|..-+..+-||||+++||+++.|.+|+||+.+.
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P---~--~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP---V--HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceE---h--hheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 125667888999999999999999876432211100 0 23678999999999999999999999999999999877
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCC
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 647 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h 647 (1107)
. +..-..+.+|+.-|+..+||.||++|++|+.|+++++||+..++.+ ..+.||
T Consensus 247 ~------------------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v---~qy~gh 299 (311)
T KOG0315|consen 247 F------------------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV---RQYQGH 299 (311)
T ss_pred c------------------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee---eecCCc
Confidence 4 1244667899999999999999999999999999999999999877 466778
Q ss_pred CCceEEEEEe
Q 001287 648 SSPIISMTWT 657 (1107)
Q Consensus 648 ~~~V~~l~fs 657 (1107)
..+-.+++..
T Consensus 300 ~K~~vc~~ln 309 (311)
T KOG0315|consen 300 HKAAVCVALN 309 (311)
T ss_pred ccccEEEEee
Confidence 8777666543
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=4.1e-27 Score=236.09 Aligned_cols=205 Identities=18% Similarity=0.213 Sum_probs=175.3
Q ss_pred ecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCc------ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 31 HYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
..||+..|+.++..+. ...|..++.|..|.+|++... -+..+.+|+.-|+.+..++||.+.+|++.|+++++|
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 3589999999999987 568899999999999998433 234677899999999999999999999999999999
Q ss_pred EcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 104 Dl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
|+.+++....+ .|...|++++|+++...+++|+.|.+|.+|+.-. .+. |++..+. +.++|.||
T Consensus 91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g---~ck---~t~~~~~----------~~~WVscv 154 (315)
T KOG0279|consen 91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG---VCK---YTIHEDS----------HREWVSCV 154 (315)
T ss_pred EecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc---cEE---EEEecCC----------CcCcEEEE
Confidence 99999776666 8999999999999999999999999999999653 232 5565442 02899999
Q ss_pred EcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC
Q 001287 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1107)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1107)
.|+|+.....+++++.|++|++||+.+-++.. +.|| .+-|+.+.. |||
T Consensus 155 rfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh------------------------------~~~v~t~~v-SpD 203 (315)
T KOG0279|consen 155 RFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH------------------------------SGYVNTVTV-SPD 203 (315)
T ss_pred EEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc------------------------------cccEEEEEE-CCC
Confidence 99998766779999999999999999987754 4555 677888884 699
Q ss_pred CCEEEEEEcCCcEEEEeCCCC
Q 001287 262 GSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 262 g~~l~sg~~dG~I~lWd~~~~ 282 (1107)
|..+++|+.||.+.+||+..+
T Consensus 204 GslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCEEecCCCCceEEEEEccCC
Confidence 999999999999999999754
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=7.4e-27 Score=242.26 Aligned_cols=339 Identities=15% Similarity=0.203 Sum_probs=255.8
Q ss_pred cceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 001287 67 IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIK 145 (1107)
Q Consensus 67 ~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~ 145 (1107)
..+..+..|.++|-+++.+|+...+++++.|..-.+|++.++..+..+ .|...|+++.|+.++.+|++|+-+|.|+||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 345577889999999999999999999999999999999999877666 8999999999999999999999999999999
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC-CEEEEEeCCcccccc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQIIFVGGGKDLQLK 224 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~-~~~~~~~g~~~~~~~ 224 (1107)
.+. +... +.+...- ..+.=+.||| .+..|+.|+.||.+-+|.+.+ +.+..+.||
T Consensus 135 ~st--g~~~---~~~~~e~------------~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh------ 189 (399)
T KOG0296|consen 135 VST--GGEQ---WKLDQEV------------EDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGH------ 189 (399)
T ss_pred ccc--CceE---EEeeccc------------CceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCC------
Confidence 875 3333 2232111 5588899999 577799999999999999998 555667777
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccc
Q 001287 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSA 304 (1107)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (1107)
..++++-+|. |+|+.+++|+.||+|++||..+++ ++.++....+
T Consensus 190 ------------------------~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~-----------p~~~~~~~e~ 233 (399)
T KOG0296|consen 190 ------------------------NSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQ-----------PLHKITQAEG 233 (399)
T ss_pred ------------------------CCCccccccc-CCCceEEEEecCceEEEEecCCCc-----------eeEEeccccc
Confidence 6678888865 999999999999999999998762 2221111000
Q ss_pred cCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCC
Q 001287 305 ERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATV 384 (1107)
Q Consensus 305 ~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~ 384 (1107)
.
T Consensus 234 ~------------------------------------------------------------------------------- 234 (399)
T KOG0296|consen 234 L------------------------------------------------------------------------------- 234 (399)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccc
Q 001287 385 GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKL 464 (1107)
Q Consensus 385 ~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1107)
T Consensus 235 -------------------------------------------------------------------------------- 234 (399)
T KOG0296|consen 235 -------------------------------------------------------------------------------- 234 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCC---eEE
Q 001287 465 HSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP---VST 541 (1107)
Q Consensus 465 ~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~---Vt~ 541 (1107)
+..++.+...+..+++|+.++.+++-+...++.. ...++... .....+... |-.
T Consensus 235 --------------------~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv--~~~n~~~~-~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 235 --------------------ELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV--NCNNGTVP-ELKPSQEELDESVES 291 (399)
T ss_pred --------------------cCCccccccccceeEeccCCccEEEEccccceEE--EecCCCCc-cccccchhhhhhhhh
Confidence 0001122233335666666666666665555533 22221111 012233334 444
Q ss_pred EEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEE
Q 001287 542 LSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG 621 (1107)
Q Consensus 542 l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~G 621 (1107)
+.||..=.+.|+|+-||+|.|||+.... +.....|..+|+.+.|-+ ..+|+++
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~--------------------------~R~~c~he~~V~~l~w~~-t~~l~t~ 344 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAAST--------------------------LRHICEHEDGVTKLKWLN-TDYLLTA 344 (399)
T ss_pred cccccccchhhcccccceEEEEecccch--------------------------hheeccCCCceEEEEEcC-cchheee
Confidence 5555555678999999999999998752 233456889999999999 6789999
Q ss_pred eCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 622 FECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 622 s~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
+.||.|+.||.+++.++ ..+.||..+|..++++ |+++++++++.|+..+|++..
T Consensus 345 c~~g~v~~wDaRtG~l~---~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLK---FTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccCceEEeeeccccceE---EEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEecC
Confidence 99999999999999998 4678899999999999 568899999999999999753
No 26
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=7.6e-26 Score=256.47 Aligned_cols=520 Identities=16% Similarity=0.178 Sum_probs=331.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-ee-
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SL- 110 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-~~- 110 (1107)
.+|..|+|+|-+.+--+.|.| ..|.+|-.......+..+|.+.|..+.-- |.+|+++..++.|.||+..+. ..
T Consensus 74 ~lp~~I~alas~~~~vy~A~g---~~i~~~~rgk~i~~~~~~~~a~v~~l~~f--Ge~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASG---NKIYAYARGKHIRHTTLLHGAKVHLLLPF--GEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecC---cEEEEEEccceEEEEeccccceEEEEeee--cceEEEEEccCcEEEEEeccccccc
Confidence 588999999988665555554 55999988877777888888888887544 567999999999999999884 21
Q ss_pred -e--eeeccCCC-eEEEEEecCC--CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 111 -A--CCLKWESN-ITAFSVISGS--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 111 -~--~~~~~~~~-Vt~l~~~~~~--~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
+ ..+...+. |+++. +|.. +.+++|++.|.+.+|++.+ ++++ |.++.+. ..|+++..
T Consensus 149 ~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt--~K~v---~~f~~~~------------s~IT~ieq 210 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRT--GKVV---YTFQEFF------------SRITAIEQ 210 (910)
T ss_pred cccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEecc--CcEE---EEecccc------------cceeEecc
Confidence 1 22232322 87774 4443 7899999999999999986 5666 6687766 78999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS- 263 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~- 263 (1107)
+|. -+.+++|..+|.|.++|++.++.+..+.| . .++|+++.|- .||.
T Consensus 211 sPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~---------d--------------------~g~VtslSFr-tDG~p 258 (910)
T KOG1539|consen 211 SPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQ---------D--------------------WGRVTSLSFR-TDGNP 258 (910)
T ss_pred CCc--ceEEEEeccCceEEEEEcccCcEEEEEEc---------c--------------------ccceeEEEec-cCCCe
Confidence 995 45699999999999999999999887766 0 4899999975 7886
Q ss_pred EEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceE
Q 001287 264 ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVL 343 (1107)
Q Consensus 264 ~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~l 343 (1107)
.|++|+..|.+.+||++...........+ ........+-....++++.+.|.
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah----------------------~~sv~~~~fl~~epVl~ta~~Dn------ 310 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAH----------------------YGSVTGATFLPGEPVLVTAGADN------ 310 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccc----------------------cCCcccceecCCCceEeeccCCC------
Confidence 56777888999999998653322111111 00100011233445566666664
Q ss_pred EEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceee--eecccCCCCCC
Q 001287 344 TVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTT--LLSQQEKKPSV 421 (1107)
Q Consensus 344 tvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~--~~~~~~~~~~~ 421 (1107)
.+++|-..-.....+.-+..-+...|...+.+.-..+ ..+.....+..+..|+...... .+.+.......
T Consensus 311 -Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g-------~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 311 -SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG-------HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred -ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc-------EEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 3333311100111111122223333433333332211 0111112222222222111000 00000000000
Q ss_pred CCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccC---CCCccCCc--cccccCC----CCCCCCccccC
Q 001287 422 CPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS---SHTQAGHI--KWPLSGG----VPSPVPITKCH 492 (1107)
Q Consensus 422 ~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~wp~~gg----~~~~~~~~~~s 492 (1107)
.....-....+..++|+..++.. .....|..+....+... .+..+.++ .|-+... ....+.+++.+
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~-----~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs 457 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFEN-----AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS 457 (910)
T ss_pred ccccccchhhhcCCcceeeeccc-----chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe
Confidence 00001111222345555444421 11123433322221110 00000000 0000000 11223455889
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCc
Q 001287 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1107)
Q Consensus 493 ~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~ 572 (1107)
+.|++.+.|+..|+|.+++++.+..+..|. .-..|..+|+.++...-++.+++++.+|.+.+|++....
T Consensus 458 ~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--- 526 (910)
T KOG1539|consen 458 FCGNFVFIGYSKGTIDRFNMQSGIHRKSFG--------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--- 526 (910)
T ss_pred ccCceEEEeccCCeEEEEEcccCeeecccc--------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc---
Confidence 999999999999999999999998763221 124788999999999999999999999999999998862
Q ss_pred cceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceE
Q 001287 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 652 (1107)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~ 652 (1107)
++.. -.....++++.++....++|++.+|-.|+++|+.+.+++ +.+.||...|+
T Consensus 527 ----------------------l~~~-l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv---R~f~gh~nrit 580 (910)
T KOG1539|consen 527 ----------------------LKKS-LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV---REFWGHGNRIT 580 (910)
T ss_pred ----------------------eeee-eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh---HHhhcccccee
Confidence 1121 234667888999998889999999999999999999988 78899999999
Q ss_pred EEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecC
Q 001287 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 707 (1107)
Q Consensus 653 ~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~ 707 (1107)
++.|+ |++++|++++.|++|++||.-+|.+|-.
T Consensus 581 d~~FS----------------------~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 581 DMTFS----------------------PDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eeEeC----------------------CCCcEEEEeecCCcEEEEeccCcceeee
Confidence 99999 7799999999999999999999888743
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-25 Score=247.15 Aligned_cols=200 Identities=14% Similarity=0.256 Sum_probs=172.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~ 113 (1107)
...|.++.|+|...++.++-.+|.|.||+.++...+ ...-.+.||++..|.+-...++++++|..|+|++..+++.++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE
Confidence 446999999999999999999999999999776544 4444667999999999989999999999999999999998887
Q ss_pred e-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCE
Q 001287 114 L-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1107)
Q Consensus 114 ~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1107)
+ .|+.-|.|++++|..+++++++.|-+|++|+++.. -.+. ..+.+|+ ..|.+|+|+|.+.. .
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~---qtfeGH~------------HyVMqv~fnPkD~n-t 155 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACE---QTFEGHE------------HYVMQVAFNPKDPN-T 155 (794)
T ss_pred eeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeee---eEEcCcc------------eEEEEEEecCCCcc-c
Confidence 7 78999999999999999999999999999999853 2233 3478887 77999999998555 5
Q ss_pred EEEEECCCeEEEEEccCCEE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC--CEEEEEE
Q 001287 193 VLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG--SILAVGY 269 (1107)
Q Consensus 193 ll~~~~dg~V~vwdl~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg--~~l~sg~ 269 (1107)
+++++-|++|+||.+.+..+ ..+.|| ++.|.|++|. +-| .+|++|+
T Consensus 156 FaS~sLDrTVKVWslgs~~~nfTl~gH------------------------------ekGVN~Vdyy-~~gdkpylIsga 204 (794)
T KOG0276|consen 156 FASASLDRTVKVWSLGSPHPNFTLEGH------------------------------EKGVNCVDYY-TGGDKPYLISGA 204 (794)
T ss_pred eeeeeccccEEEEEcCCCCCceeeecc------------------------------ccCcceEEec-cCCCcceEEecC
Confidence 99999999999999988755 345577 8899999987 444 4999999
Q ss_pred cCCcEEEEeCCCC
Q 001287 270 IDGDILLWNTSTT 282 (1107)
Q Consensus 270 ~dG~I~lWd~~~~ 282 (1107)
.|.+|++||..+.
T Consensus 205 DD~tiKvWDyQtk 217 (794)
T KOG0276|consen 205 DDLTIKVWDYQTK 217 (794)
T ss_pred CCceEEEeecchH
Confidence 9999999999654
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.2e-27 Score=271.55 Aligned_cols=297 Identities=22% Similarity=0.304 Sum_probs=223.1
Q ss_pred CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceee
Q 001287 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
...++|..|++|+..||.+-.|..|++|.+...++.. +.....+ ..+-+++.|-.+...+.+ .....
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~-lk~~~~l---------~~~d~~sad~~~~~~D~~--~~~~~- 444 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK-LKDASDL---------SNIDTESADVDVDMLDDD--SSGTS- 444 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhcc-ccchhhh---------ccccccccchhhhhcccc--CCcee-
Confidence 4479999999999988888899999999998663322 2111111 111123333323333322 22222
Q ss_pred cceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE-EEEeCCccccccccccCCCCCC
Q 001287 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEG 234 (1107)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~-~~~~g~~~~~~~~~~~~~~~~~ 234 (1107)
..+-+|. ++|+++.|+| +.++|++++.|++||+|.+.+... +.+.||
T Consensus 445 --~~L~GH~------------GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~y~GH---------------- 492 (707)
T KOG0263|consen 445 --RTLYGHS------------GPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH---------------- 492 (707)
T ss_pred --EEeecCC------------Cceeeeeecc--cccceeeccCCcceeeeecccceeEEEecCC----------------
Confidence 2356776 9999999999 677799999999999999999865 556677
Q ss_pred CCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEE
Q 001287 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLH 314 (1107)
Q Consensus 235 ~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 314 (1107)
..+|..+.|. |.|-++||++.|++.++|........+
T Consensus 493 --------------~~PVwdV~F~-P~GyYFatas~D~tArLWs~d~~~PlR---------------------------- 529 (707)
T KOG0263|consen 493 --------------LAPVWDVQFA-PRGYYFATASHDQTARLWSTDHNKPLR---------------------------- 529 (707)
T ss_pred --------------CcceeeEEec-CCceEEEecCCCceeeeeecccCCchh----------------------------
Confidence 6788899965 999999999999999999885321000
Q ss_pred eecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEE
Q 001287 315 WSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVL 394 (1107)
Q Consensus 315 w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl 394 (1107)
T Consensus 530 -------------------------------------------------------------------------------- 529 (707)
T KOG0263|consen 530 -------------------------------------------------------------------------------- 529 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCc
Q 001287 395 TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHI 474 (1107)
Q Consensus 395 ~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1107)
T Consensus 530 -------------------------------------------------------------------------------- 529 (707)
T KOG0263|consen 530 -------------------------------------------------------------------------------- 529 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEe
Q 001287 475 KWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVG 554 (1107)
Q Consensus 475 ~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg 554 (1107)
+.-||-+.+.|+.|+|+..+++||+.|.+||+||+.++... ..+.||..+|++|+|||+|++|++|
T Consensus 530 ---ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-----------RiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 530 ---IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-----------RIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred ---hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-----------EEecCCCCceEEEEEcCCCceEeec
Confidence 11122223345688999999999999999999999998865 3468999999999999999999999
Q ss_pred ccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001287 555 NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1107)
Q Consensus 555 ~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~ 634 (1107)
+.||.|.|||+.... .+..+.+|.+.|.+|.||.+|..||+|+.|.+|++||+..
T Consensus 596 ~ed~~I~iWDl~~~~-------------------------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGS-------------------------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCc-------------------------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999998862 4667789999999999999999999999999999999865
Q ss_pred CeEE---------------------EEeecCCCCCCceEEEEEeec
Q 001287 635 LSVL---------------------FFTDDISGSSSPIISMTWTEF 659 (1107)
Q Consensus 635 ~~~~---------------------~~~~~~~~h~~~V~~l~fs~~ 659 (1107)
.... +....+..-..+|..|.|+..
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftrr 696 (707)
T KOG0263|consen 651 VIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRR 696 (707)
T ss_pred hcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEecc
Confidence 4332 012233334568888888853
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.1e-27 Score=243.94 Aligned_cols=297 Identities=15% Similarity=0.214 Sum_probs=250.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-e
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-S 109 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-~ 109 (1107)
.|+-..|+.+-|+|+-.++|++++|++|++||..+.+.. .+.+|...|..|.|+..|.+|+++++|-.+++||.++. +
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR 184 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH
Confidence 588899999999999999999999999999999666554 67889999999999999999999999999999999884 3
Q ss_pred eee-eeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 110 LAC-CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 110 ~~~-~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
++. .+.|+..|.++.|-|.++++++++.|.+|+.|+++. +-.+ |.+++|. ++|..+.. ..
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g~cv---~t~~~h~------------ewvr~v~v--~~ 245 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT--GYCV---KTFPGHS------------EWVRMVRV--NQ 245 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc--ceeE---EeccCch------------HhEEEEEe--cC
Confidence 343 447889999999999999999999999999999986 4444 5588887 89999988 45
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEE-EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
+|..+++++.|.+|++|-+.++.+. ..++| +-+|.|+.|. |... ++
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~h------------------------------Eh~vEci~wa-p~~~--~~ 292 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAELREH------------------------------EHPVECIAWA-PESS--YP 292 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhhhcc------------------------------ccceEEEEec-cccc--Cc
Confidence 8999999999999999999988653 34455 6678888887 5321 00
Q ss_pred EEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEE
Q 001287 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1107)
Q Consensus 268 g~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~ 347 (1107)
. +. . .+|
T Consensus 293 ~----------i~------------------------------------------~--------at~------------- 299 (406)
T KOG0295|consen 293 S----------IS------------------------------------------E--------ATG------------- 299 (406)
T ss_pred c----------hh------------------------------------------h--------ccC-------------
Confidence 0 00 0 000
Q ss_pred cCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCC
Q 001287 348 LEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP 427 (1107)
Q Consensus 348 l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 427 (1107)
T Consensus 300 -------------------------------------------------------------------------------- 299 (406)
T KOG0295|consen 300 -------------------------------------------------------------------------------- 299 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcE
Q 001287 428 GVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSV 507 (1107)
Q Consensus 428 ~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtI 507 (1107)
-...++++.+|+.|++|
T Consensus 300 ---------------------------------------------------------------~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 300 ---------------------------------------------------------------STNGGQVLGSGSRDKTI 316 (406)
T ss_pred ---------------------------------------------------------------CCCCccEEEeecccceE
Confidence 00022378999999999
Q ss_pred EEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceec
Q 001287 508 RIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHAL 587 (1107)
Q Consensus 508 riWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1107)
|+||++++.+. .++.+|...|..++|+|.|+||++..+|+++++|++...
T Consensus 317 k~wdv~tg~cL-----------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~------------------- 366 (406)
T KOG0295|consen 317 KIWDVSTGMCL-----------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL------------------- 366 (406)
T ss_pred EEEeccCCeEE-----------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-------------------
Confidence 99999999877 678899999999999999999999999999999999987
Q ss_pred ccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001287 588 PEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 588 ~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~ 632 (1107)
+|..++..|..-|+++.|..+..++++|+-|-++++|.-
T Consensus 367 ------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 ------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 688888899999999999999999999999999999963
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-25 Score=252.28 Aligned_cols=222 Identities=13% Similarity=0.207 Sum_probs=169.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
+.|..++|+|...++.++-..|.|++||..-..++ ..-+|.+||+.++|+|.+.+++|+++|..|+||+..+++++.++
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 45777999999999999999999999998655444 45679999999999999999999999999999999999887665
Q ss_pred -ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 115 -~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
+|-.-|..+.|++.-+|+++++.|-+|+||++.. ++++.. +.+|. ..|.|.+|||+ .+++
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs--r~~iav---ltGHn------------HYVMcAqFhpt--EDlI 150 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS--RKCIAV---LTGHN------------HYVMCAQFHPT--EDLI 150 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEeccC--CceEEE---EecCc------------eEEEeeccCCc--cceE
Confidence 8999999999999999999999999999999986 445432 77776 77999999996 4459
Q ss_pred EEEECCCeEEEEEccCCEEEEEeCC-ccccccccccCCCCCCCCccccCCCC--CCCCCCceeEEEeecCCCCEEEEEEc
Q 001287 194 LIAYENALVILWDVSEAQIIFVGGG-KDLQLKDGVVDSPSEGDSTFLEGISE--HQPEEKEISALCWASSSGSILAVGYI 270 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1107)
++++-|.+|||||++.-+-...... -+.++...-. ...+.+..+.+-+ -+.+.+.|..++|+ |.-..|++|+.
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~---~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~D 226 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG---NSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGAD 226 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhcccc---chhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCC
Confidence 9999999999999987543322111 0000000000 0000000011111 12247788888876 88888999999
Q ss_pred CCcEEEEeCC
Q 001287 271 DGDILLWNTS 280 (1107)
Q Consensus 271 dG~I~lWd~~ 280 (1107)
|..|++|.++
T Consensus 227 DRqVKlWrmn 236 (1202)
T KOG0292|consen 227 DRQVKLWRMN 236 (1202)
T ss_pred cceeeEEEec
Confidence 9999999885
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=6.1e-26 Score=227.72 Aligned_cols=291 Identities=17% Similarity=0.216 Sum_probs=222.7
Q ss_pred ccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 115 KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
.|++.|+.++..+.+ +.++.++.|.++.+|++..++.+.-.....+.+|. ..|..+..++ +|++.
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs------------H~v~dv~~s~--dg~~a 78 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS------------HFVSDVVLSS--DGNFA 78 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc------------eEecceEEcc--CCceE
Confidence 788999999999874 67889999999999999875433322123467776 6688888866 89999
Q ss_pred EEEECCCeEEEEEccCCEE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC
Q 001287 194 LIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG 272 (1107)
++++.|+++++||+.+++. ..+.|| ...|.++++ ++|.+.|++|+.|.
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~GH------------------------------~~dVlsva~-s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVGH------------------------------TKDVLSVAF-STDNRQIVSGSRDK 127 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEec------------------------------CCceEEEEe-cCCCceeecCCCcc
Confidence 9999999999999999765 456677 788999996 59999999999999
Q ss_pred cEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccc
Q 001287 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1107)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1107)
+|++||..... ++. .+ ++.
T Consensus 128 Tiklwnt~g~c--------------k~t-------------------------------~~-~~~--------------- 146 (315)
T KOG0279|consen 128 TIKLWNTLGVC--------------KYT-------------------------------IH-EDS--------------- 146 (315)
T ss_pred eeeeeeecccE--------------EEE-------------------------------Ee-cCC---------------
Confidence 99999986431 000 00 000
Q ss_pred cccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCccccc
Q 001287 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1107)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1107)
....+.
T Consensus 147 --------------~~~WVs------------------------------------------------------------ 152 (315)
T KOG0279|consen 147 --------------HREWVS------------------------------------------------------------ 152 (315)
T ss_pred --------------CcCcEE------------------------------------------------------------
Confidence 000111
Q ss_pred CCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCC--CcEEEEEecCCcEEEE
Q 001287 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV--DRVYLAGYHDGSVRIW 510 (1107)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~--~~~laTgs~DgtIriW 510 (1107)
+++|+|+ ..+|++++.|++||+|
T Consensus 153 -------------------------------------------------------cvrfsP~~~~p~Ivs~s~DktvKvW 177 (315)
T KOG0279|consen 153 -------------------------------------------------------CVRFSPNESNPIIVSASWDKTVKVW 177 (315)
T ss_pred -------------------------------------------------------EEEEcCCCCCcEEEEccCCceEEEE
Confidence 2223333 3389999999999999
Q ss_pred eCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccC
Q 001287 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1107)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1107)
|+.+..+. ..+.+|..-|+.+++||||..+++|+.||.+.+|+++...+
T Consensus 178 nl~~~~l~-----------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-------------------- 226 (315)
T KOG0279|consen 178 NLRNCQLR-----------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-------------------- 226 (315)
T ss_pred ccCCcchh-----------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--------------------
Confidence 99988876 55779999999999999999999999999999999988632
Q ss_pred CcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-CCCC---CCce--EEEEEeecccCcc
Q 001287 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD-ISGS---SSPI--ISMTWTEFKNTHS 664 (1107)
Q Consensus 591 ~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~-~~~h---~~~V--~~l~fs~~~~~~~ 664 (1107)
.....|...|.+++|+|+-..|+.+...+ |+|||+.++.++..... ..+. .+.+ .+|+|+
T Consensus 227 ------lysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws------- 292 (315)
T KOG0279|consen 227 ------LYSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS------- 292 (315)
T ss_pred ------eEeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEc-------
Confidence 22246889999999999998888888766 99999999988754332 1112 1133 355666
Q ss_pred ccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 665 ~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
+++..|++|-.|+-|++|...
T Consensus 293 ---------------~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 293 ---------------ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ---------------CCCcEEEeeecCCcEEEEEee
Confidence 557889999999999999753
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=3.3e-27 Score=268.07 Aligned_cols=152 Identities=20% Similarity=0.282 Sum_probs=136.1
Q ss_pred cccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCC
Q 001287 489 TKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1107)
Q Consensus 489 ~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~ 568 (1107)
+.|+|.|-++|||+.|++-|+|........ ..+.+|-..|.|+.|+|++.|+++|+.|.+||+|+..+.
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~Pl-----------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPL-----------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCch-----------hhhcccccccceEEECCcccccccCCCCceEEEEEcCCC
Confidence 345666779999999999999998765433 236799999999999999999999999999999999887
Q ss_pred CCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCC
Q 001287 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 648 (1107)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~ 648 (1107)
..+..|.+|.++|++|+|||+|++||+|+.||.|.|||+.+++.+ ..+.+|.
T Consensus 568 -------------------------~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v---~~l~~Ht 619 (707)
T KOG0263|consen 568 -------------------------NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV---KQLKGHT 619 (707)
T ss_pred -------------------------cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch---hhhhccc
Confidence 357889999999999999999999999999999999999999988 5678899
Q ss_pred CceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 649 SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 649 ~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
+.|.+|.|+ .++.+|++|+.|.+|.+||...
T Consensus 620 ~ti~SlsFS----------------------~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 620 GTIYSLSFS----------------------RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CceeEEEEe----------------------cCCCEEEecCCCCeEEEEEchh
Confidence 999999999 5689999999999999999763
No 33
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.6e-24 Score=235.17 Aligned_cols=515 Identities=13% Similarity=0.164 Sum_probs=308.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc---ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
-.|++|+||||+.+.+.||++-.||.|.||++... +.++..+....|.+|+|++ +++|+|.+.+|.|.-||+.+.+
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence 46999999999999999999999999999998543 3444445566999999994 5899999999999999999999
Q ss_pred eeeeec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 110 LACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 110 ~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
....+. ..+.|.+++.+|.+..+++|+.||.+ .+++...+++. |+..-. ++ .+.|.++.|+|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl--~~~s~~p~~I~---~~r~l~-rq---------~sRvLslsw~~-- 164 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVL--YDFSIGPDKIT---YKRSLM-RQ---------KSRVLSLSWNP-- 164 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceE--EEEecCCceEE---EEeecc-cc---------cceEEEEEecC--
Confidence 888884 55789999999999999999999954 44554445554 322110 11 16799999998
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1107)
++.+++.|+.||.|++||+.++....+... .... +. ..+.--|.++.+. .+ ..|++|
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--~~d~--l~-----------------k~~~~iVWSv~~L-rd-~tI~sg 221 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITM--QLDR--LS-----------------KREPTIVWSVLFL-RD-STIASG 221 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeee--cccc--cc-----------------cCCceEEEEEEEe-ec-CcEEEe
Confidence 677899999999999999999876552111 0000 00 0013457778876 44 469999
Q ss_pred EcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEc
Q 001287 269 YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSL 348 (1107)
Q Consensus 269 ~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l 348 (1107)
.+.|+|.+||...+...+.... ....+..+ +...++..++++|-|. +++.+
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~---------------h~adVl~L--------av~~~~d~vfsaGvd~------~ii~~ 272 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSC---------------HDADVLAL--------AVADNEDRVFSAGVDP------KIIQY 272 (691)
T ss_pred cCCceEEEEcccCcchhhhhhh---------------hhcceeEE--------EEcCCCCeEEEccCCC------ceEEE
Confidence 9999999999988755442110 11112222 2333434444444442 14443
Q ss_pred Cccccccccceeeeeeec-CCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCC
Q 001287 349 EWSSGMENLRCVSRVDIT-LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP 427 (1107)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~-~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 427 (1107)
........ +....... ....+..|+..+. +++....+..+++-.......+... .....|
T Consensus 273 ~~~~~~~~--wv~~~~r~~h~hdvrs~av~~~----------~l~sgG~d~~l~i~~s~~~~~~~h~-------~~~~~p 333 (691)
T KOG2048|consen 273 SLTTNKSE--WVINSRRDLHAHDVRSMAVIEN----------ALISGGRDFTLAICSSREFKNMDHR-------QKNLFP 333 (691)
T ss_pred EecCCccc--eeeeccccCCcccceeeeeecc----------eEEecceeeEEEEccccccCchhhh-------cccccc
Confidence 32221110 11111111 1124445554443 2222233333332111110000000 000000
Q ss_pred cccccCCCceeEEEEEeccCCCCCchhhhH----HHhhccc--cCCCCccCCccccccCCCCCCCCccccCCCCcEEEEE
Q 001287 428 GVIPISDPIMTVAEFMLLPFGGHSSKGLSE----IATFTKL--HSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAG 501 (1107)
Q Consensus 428 ~~~~~~~~~it~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTg 501 (1107)
. .+.+.++ +...+.-.|.. ++..+.. +++.. + ....-+.--....+++.+++|+|++|+-+
T Consensus 334 ~-----~~~v~~a------~~~~L~~~w~~h~v~lwrlGS~~~~g~~~-~-~~Llkl~~k~~~nIs~~aiSPdg~~Ia~s 400 (691)
T KOG2048|consen 334 A-----SDRVSVA------PENRLLVLWKAHGVDLWRLGSVILQGEYN-Y-IHLLKLFTKEKENISCAAISPDGNLIAIS 400 (691)
T ss_pred c-----cceeecC------ccceEEEEeccccccceeccCcccccccC-h-hhheeeecCCccceeeeccCCCCCEEEEe
Confidence 0 0001110 00000011100 0000000 00000 0 00000111123456777999999999987
Q ss_pred ecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEec-cCceEEEEEecCCCCCccceeeccC
Q 001287 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN-EFGLVYIYNLNGSLDAKNFLFVLET 580 (1107)
Q Consensus 502 s~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~-~dg~V~vw~~~~~~~~~~~~~~~~~ 580 (1107)
.- ..++||.++.........++ .+..-..+++.+.|+-|+..++..+ .+..+.++++......
T Consensus 401 t~-~~~~iy~L~~~~~vk~~~v~------~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k--------- 464 (691)
T KOG2048|consen 401 TV-SRTKIYRLQPDPNVKVINVD------DVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK--------- 464 (691)
T ss_pred ec-cceEEEEeccCcceeEEEec------cchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh---------
Confidence 53 34677777653322111111 1122234688999999998877777 6788888887765321
Q ss_pred cCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecc
Q 001287 581 KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFK 660 (1107)
Q Consensus 581 ~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~ 660 (1107)
+...++ -+.-...|+.|+.||+|++||+.+.+|.|.+|++++....+.. ......|+.+.|.+.
T Consensus 465 --el~~~~----------~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~---~rln~~vTa~~~~~~- 528 (691)
T KOG2048|consen 465 --ELKSIQ----------SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK---VRLNIDVTAAAFSPF- 528 (691)
T ss_pred --hhhccc----------cccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch---hccCcceeeeecccc-
Confidence 011110 1134578999999999999999999999999999998776322 246688999999853
Q ss_pred cCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 661 NTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 661 ~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
..+.|+++++|++|+-+|.+.
T Consensus 529 --------------------~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 529 --------------------VRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred --------------------ccCcEEEEecCCeEEEEecch
Confidence 345699999999999999854
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.2e-25 Score=249.21 Aligned_cols=313 Identities=14% Similarity=0.235 Sum_probs=240.5
Q ss_pred CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCce
Q 001287 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l 153 (1107)
.+..|+.|+|+|....++++=..|.|++||.+=+.++..+ .|+++|..++|+|+.+++++|+.|-.|+||+|... ++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rc 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RC 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--ee
Confidence 3568999999999999999999999999999999998887 79999999999999999999999999999999863 33
Q ss_pred eecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCC
Q 001287 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPS 232 (1107)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~ 232 (1107)
. |++.+|- +.|..+.||+ ....+++++.|.+|+||++.+.+++. ..||
T Consensus 86 l---ftL~GHl------------DYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltGH-------------- 134 (1202)
T KOG0292|consen 86 L---FTLLGHL------------DYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTGH-------------- 134 (1202)
T ss_pred h---hhhcccc------------ceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEecC--------------
Confidence 3 5677886 8999999998 56679999999999999999987765 6677
Q ss_pred CCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEE
Q 001287 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1107)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 312 (1107)
.--|.|+.|+ |....|++++-|.+|++||+.........+..-.+ .. ..
T Consensus 135 ----------------nHYVMcAqFh-ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~-~~-------------~~ 183 (1202)
T KOG0292|consen 135 ----------------NHYVMCAQFH-PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLED-QM-------------RG 183 (1202)
T ss_pred ----------------ceEEEeeccC-CccceEEEecccceEEEEeecchhccCCCCCCchh-hh-------------hc
Confidence 5568888876 98999999999999999999754211100000000 00 00
Q ss_pred EEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEE
Q 001287 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1107)
Q Consensus 313 ~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~ 392 (1107)
. ..++. +.|+.|. ++
T Consensus 184 ~----------~~~~d--Lfg~~Da-------VV---------------------------------------------- 198 (1202)
T KOG0292|consen 184 Q----------QGNSD--LFGQTDA-------VV---------------------------------------------- 198 (1202)
T ss_pred c----------ccchh--hcCCcCe-------ee----------------------------------------------
Confidence 0 00000 0000000 00
Q ss_pred EEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccC
Q 001287 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1107)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1107)
++
T Consensus 199 ------------------------------------------------K~------------------------------ 200 (1202)
T KOG0292|consen 199 ------------------------------------------------KH------------------------------ 200 (1202)
T ss_pred ------------------------------------------------ee------------------------------
Confidence 00
Q ss_pred CccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEE
Q 001287 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1107)
Q Consensus 473 ~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~La 552 (1107)
+..||..-++-++|+|.-.+|++|+.|+.|++|.++..+-= ++ -...+|...|+++-|+|...+++
T Consensus 201 -----VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-------Ev--DtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 201 -----VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-------EV--DTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred -----eecccccccceEEecCCcceEEecCCcceeeEEEeccccce-------ee--hhhhcccCCcceEEecCccceeE
Confidence 22233333445588888889999999999999998754311 00 13679999999999999999999
Q ss_pred EeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001287 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 553 sg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~ 632 (1107)
+.+.|++++|||+... .++.+|+..+..-+.++-+|..+++|.|-+.| +-||-+
T Consensus 267 SnsEDksirVwDm~kR-------------------------t~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFkl 320 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKR-------------------------TSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFKL 320 (1202)
T ss_pred ecCCCccEEEEecccc-------------------------cceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEEE
Confidence 9999999999999886 35678888899999999999999999998888 567766
Q ss_pred CC
Q 001287 633 NL 634 (1107)
Q Consensus 633 ~~ 634 (1107)
+.
T Consensus 321 eR 322 (1202)
T KOG0292|consen 321 ER 322 (1202)
T ss_pred cc
Confidence 53
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=236.23 Aligned_cols=200 Identities=18% Similarity=0.283 Sum_probs=174.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~ 110 (1107)
-||.+-|.|++++|...++|+|+.|++|+|||+...+ .+.+.+|-..|..++||+-..||+|++.|+.|+.||++.+++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 5899999999999999999999999999999996554 557778999999999999999999999999999999999998
Q ss_pred eeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 111 ~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
+..+ +|-..|.|++..|.-+.|++|+.|.+++|||+.+... .+.+.+|. .+|..|.++|. +
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-----V~~l~GH~------------~~V~~V~~~~~-d 289 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-----VHVLSGHT------------NPVASVMCQPT-D 289 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-----EEEecCCC------------CcceeEEeecC-C
Confidence 8766 7889999999999999999999999999999985321 14578887 89999999987 5
Q ss_pred CCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE
Q 001287 190 GNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1107)
++ +++++.|++|++||+..++... ...| .+.|.++|-+ |+...++++
T Consensus 290 pq-vit~S~D~tvrlWDl~agkt~~tlt~h------------------------------kksvral~lh-P~e~~fASa 337 (460)
T KOG0285|consen 290 PQ-VITGSHDSTVRLWDLRAGKTMITLTHH------------------------------KKSVRALCLH-PKENLFASA 337 (460)
T ss_pred Cc-eEEecCCceEEEeeeccCceeEeeecc------------------------------cceeeEEecC-Cchhhhhcc
Confidence 55 9999999999999999987654 4444 7789999965 998888988
Q ss_pred EcCCcEEEEeCCCC
Q 001287 269 YIDGDILLWNTSTT 282 (1107)
Q Consensus 269 ~~dG~I~lWd~~~~ 282 (1107)
+.|. |+-|++..+
T Consensus 338 s~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 338 SPDN-IKQWKLPEG 350 (460)
T ss_pred CCcc-ceeccCCcc
Confidence 8775 888888654
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.4e-25 Score=220.61 Aligned_cols=205 Identities=14% Similarity=0.200 Sum_probs=167.3
Q ss_pred eeecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCC-c--cee--eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEE
Q 001287 29 AVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDG-I--EGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~-~--~~~--~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1107)
..+.||++.+-.+|++|- |.+||+|+.|..||||+... . .+. +--.|+..|+.++|+|.|++|+++|.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 345688999999999998 88999999999999999863 2 222 22369999999999999999999999999999
Q ss_pred EEcCCCe--eeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 103 WSLESRS--LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 103 WDl~s~~--~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
|.=..+. ++..+ +|+.+|.|++|++++++||+++.|.+|.||..+.+ ..+.- .-.+..|. .-|
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded-dEfec-~aVL~~Ht------------qDV 153 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED-DEFEC-IAVLQEHT------------QDV 153 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC-CcEEE-Eeeecccc------------ccc
Confidence 9987764 44444 89999999999999999999999999999998842 22221 12255555 779
Q ss_pred EEEEcccCCCCCEEEEEECCCeEEEEEcc-CC--E-EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEE
Q 001287 180 VGVLPHPNSSGNRVLIAYENALVILWDVS-EA--Q-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~vwdl~-~~--~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1107)
-.+.|||+ ..+|++++.|.+|++|+-. .. . +..+.+| ...|.++
T Consensus 154 K~V~WHPt--~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~------------------------------~~TVW~~ 201 (312)
T KOG0645|consen 154 KHVIWHPT--EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH------------------------------ENTVWSL 201 (312)
T ss_pred cEEEEcCC--cceeEEeccCCeEEEEeecCCCCeeEEEEecCc------------------------------cceEEEE
Confidence 99999995 4569999999999999876 33 2 3344555 6689999
Q ss_pred EeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 256 CWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 256 ~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.|. +.|..|++++.|++++||...
T Consensus 202 ~F~-~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 202 AFD-NIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred Eec-CCCceEEEecCCcceEeeeec
Confidence 975 999999999999999999864
No 37
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=240.87 Aligned_cols=200 Identities=15% Similarity=0.195 Sum_probs=165.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-Ccc---eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~-~~~---~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
.-|...|--+.||++|++||+|+.|.+..||... ... ...+.+|..+|..+.||||.++|++|+.|..+.+||+.+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 4577889999999999999999999999999872 222 346778999999999999999999999999999999999
Q ss_pred CeeeeeeccC--CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 108 RSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 108 ~~~~~~~~~~--~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
+.+.+.+.+. ..+.+++|.|++..+++|+.|+++..|++|. .+. +...+-. ...|.+++..
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg---n~~---~~W~gvr-----------~~~v~dlait 363 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG---NIL---GNWEGVR-----------DPKVHDLAIT 363 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc---chh---hcccccc-----------cceeEEEEEc
Confidence 9998888554 7899999999999999999999999999984 333 1122111 1458899985
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
+ +|+.+++.+.|..|++++.++....... .++.+|++++- |.||+++
T Consensus 364 ~--Dgk~vl~v~~d~~i~l~~~e~~~dr~li------------------------------se~~~its~~i-S~d~k~~ 410 (519)
T KOG0293|consen 364 Y--DGKYVLLVTVDKKIRLYNREARVDRGLI------------------------------SEEQPITSFSI-SKDGKLA 410 (519)
T ss_pred C--CCcEEEEEecccceeeechhhhhhhccc------------------------------cccCceeEEEE-cCCCcEE
Confidence 5 8999999999999999998775433211 12678999994 6999999
Q ss_pred EEEEcCCcEEEEeCCC
Q 001287 266 AVGYIDGDILLWNTST 281 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~ 281 (1107)
++.-.+..+.+||+..
T Consensus 411 LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEE 426 (519)
T ss_pred EEEcccCeeEEeecch
Confidence 9999999999999973
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=3.2e-25 Score=280.80 Aligned_cols=321 Identities=13% Similarity=0.192 Sum_probs=228.7
Q ss_pred CCcEEEEeCCCccee------eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC----e----eeeeeccCCCeE
Q 001287 56 DGRIKVIGGDGIEGL------LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR----S----LACCLKWESNIT 121 (1107)
Q Consensus 56 dg~I~iw~~~~~~~~------~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~----~----~~~~~~~~~~Vt 121 (1107)
+|.+++|+....... .+..|.+.|.+++|++++.+|++++.|+.|+|||+.+. . ....+.+...|.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 677888888654433 12348899999999999999999999999999998642 1 122334557899
Q ss_pred EEEEecC-CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCC
Q 001287 122 AFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1107)
Q Consensus 122 ~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1107)
+++|++. +.+|++++.||+|++|++.. ++... .+.+|. ..|.+++|+|. ++.+|++|+.||
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~---~~~~H~------------~~V~~l~~~p~-~~~~L~Sgs~Dg 598 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVT---EMKEHE------------KRVWSIDYSSA-DPTLLASGSDDG 598 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEE---EecCCC------------CCEEEEEEcCC-CCCEEEEEcCCC
Confidence 9999874 68999999999999999874 33332 255665 78999999985 577799999999
Q ss_pred eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 201 ~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.|++||+.++..+....+ ...|.++.|.+++|.+|++|+.||.|++||+.
T Consensus 599 ~v~iWd~~~~~~~~~~~~------------------------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKT------------------------------KANICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred EEEEEECCCCcEEEEEec------------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 999999998876554433 44688999876789999999999999999986
Q ss_pred CCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcccccccccee
Q 001287 281 TTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1107)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~ 360 (1107)
+... ++ ..+ .+
T Consensus 649 ~~~~----------~~--------------~~~-------------------~~-------------------------- 659 (793)
T PLN00181 649 NPKL----------PL--------------CTM-------------------IG-------------------------- 659 (793)
T ss_pred CCCc----------cc--------------eEe-------------------cC--------------------------
Confidence 4310 00 000 00
Q ss_pred eeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEE
Q 001287 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVA 440 (1107)
Q Consensus 361 ~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 440 (1107)
|...|+..
T Consensus 660 ------------------------------------------------------------------------h~~~V~~v 667 (793)
T PLN00181 660 ------------------------------------------------------------------------HSKTVSYV 667 (793)
T ss_pred ------------------------------------------------------------------------CCCCEEEE
Confidence 00001111
Q ss_pred EEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEE
Q 001287 441 EFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLI 520 (1107)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~ 520 (1107)
.+. ++..|+||+.|++|+|||+....-.
T Consensus 668 -------------------------------------------------~f~-~~~~lvs~s~D~~ikiWd~~~~~~~-- 695 (793)
T PLN00181 668 -------------------------------------------------RFV-DSSTLVSSSTDNTLKLWDLSMSISG-- 695 (793)
T ss_pred -------------------------------------------------EEe-CCCEEEEEECCCEEEEEeCCCCccc--
Confidence 111 2347999999999999998743200
Q ss_pred EeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEe
Q 001287 521 CALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS 600 (1107)
Q Consensus 521 ~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 600 (1107)
...... ..+.+|...+++++|++++++|++|+.||.|+||+...........+. . .+ ...-....
T Consensus 696 --~~~~~l-~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~--~---------~~-~~~~~~~~ 760 (793)
T PLN00181 696 --INETPL-HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK--T---------ID-PVSGLEVD 760 (793)
T ss_pred --cCCcce-EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc--c---------CC-cccccccC
Confidence 000000 246789999999999999999999999999999997643110000000 0 00 00001123
Q ss_pred ecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001287 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 601 ~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~ 632 (1107)
.|...|.+++|+|++..|++|+.||.|+||++
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 46678999999999999999999999999996
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.5e-24 Score=233.14 Aligned_cols=283 Identities=17% Similarity=0.299 Sum_probs=229.2
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCC
Q 001287 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1107)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~ 151 (1107)
..|...|+++.|+|....++++=.+|.|.|||.+++..+.++. ..-+|.+..|.+..+|+++|+.|+.|+|++|.+.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~-- 87 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG-- 87 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc--
Confidence 3478899999999999999999999999999999999999885 4568999999999999999999999999999863
Q ss_pred ceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC-EE-EEEeCCccccccccccC
Q 001287 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QI-IFVGGGKDLQLKDGVVD 229 (1107)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~-~~-~~~~g~~~~~~~~~~~~ 229 (1107)
..+. .+..|. +.|.+|+.||+ ...+++++.|-+|++||.+.. .+ ..+.||
T Consensus 88 ekV~---~FeAH~------------DyIR~iavHPt--~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH----------- 139 (794)
T KOG0276|consen 88 EKVK---TFEAHS------------DYIRSIAVHPT--LPYVLTSSDDMTIKLWDWENEWACEQTFEGH----------- 139 (794)
T ss_pred eeeE---Eeeccc------------cceeeeeecCC--CCeEEecCCccEEEEeeccCceeeeeEEcCc-----------
Confidence 3332 277776 88999999996 345999999999999999886 33 446677
Q ss_pred CCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccc
Q 001287 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 309 (1107)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (1107)
..-|.++||...|.+.+++++-|++|++|.+.+. .+..
T Consensus 140 -------------------~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-----------~~nf------------ 177 (794)
T KOG0276|consen 140 -------------------EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-----------HPNF------------ 177 (794)
T ss_pred -------------------ceEEEEEEecCCCccceeeeeccccEEEEEcCCC-----------CCce------------
Confidence 6678889988677889999999999999998532 1110
Q ss_pred eEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcc
Q 001287 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKA 389 (1107)
Q Consensus 310 i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~ 389 (1107)
.+
T Consensus 178 --Tl---------------------------------------------------------------------------- 179 (794)
T KOG0276|consen 178 --TL---------------------------------------------------------------------------- 179 (794)
T ss_pred --ee----------------------------------------------------------------------------
Confidence 00
Q ss_pred eEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCC
Q 001287 390 DLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHT 469 (1107)
Q Consensus 390 ~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1107)
.-|+..|.|..+++.
T Consensus 180 -----------------------------------------~gHekGVN~Vdyy~~------------------------ 194 (794)
T KOG0276|consen 180 -----------------------------------------EGHEKGVNCVDYYTG------------------------ 194 (794)
T ss_pred -----------------------------------------eccccCcceEEeccC------------------------
Confidence 002333444444321
Q ss_pred ccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCC
Q 001287 470 QAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1107)
Q Consensus 470 ~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~ 549 (1107)
.|..+|+||+.|.+|+|||.++..|. ..+.||..-|.++.|+|.=.
T Consensus 195 -----------------------gdkpylIsgaDD~tiKvWDyQtk~CV-----------~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 195 -----------------------GDKPYLISGADDLTIKVWDYQTKSCV-----------QTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred -----------------------CCcceEEecCCCceEEEeecchHHHH-----------HHhhcccccceEEEecCCCc
Confidence 12238999999999999999999887 56999999999999999999
Q ss_pred eEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q 001287 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1107)
Q Consensus 550 ~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~i 629 (1107)
++++|+.||+|+||+-.+-.. ..++..--..|+|++-.+.++.+|+|++.|.|.|
T Consensus 241 iiisgsEDGTvriWhs~Ty~l-------------------------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKL-------------------------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEEecCCccEEEecCcceeh-------------------------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999998776532 2344556788999999999999999999997554
No 40
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=245.27 Aligned_cols=468 Identities=12% Similarity=0.130 Sum_probs=315.4
Q ss_pred CCeEEEEEcCC--CCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001287 36 ATASILAFDHI--QRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1107)
Q Consensus 36 ~~i~~lafsp~--~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~ 112 (1107)
..|+++ ++|. -.-+.+|+.+|.++||++.... +....++...|+++.=+|--..++.+..+|+|.++|+...+.+.
T Consensus 160 ~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 160 DFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred CceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 336554 3442 3567899999999999996554 45677788999999999977778888899999999999999999
Q ss_pred eeccC-CCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 113 CLKWE-SNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 113 ~~~~~-~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
++.++ ++|++++|..||+ .|++|+..|.+.+||++.. ++... ....|. +.|....|.| ..
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v--~~nah~------------~sv~~~~fl~--~e 300 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINV--TRNAHY------------GSVTGATFLP--GE 300 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeee--eecccc------------CCcccceecC--CC
Confidence 99886 9999999998885 7888889999999999852 33321 123444 7788999977 45
Q ss_pred CEEEEEECCCeEEEEEccCCEE----E-EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 191 NRVLIAYENALVILWDVSEAQI----I-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~~----~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
..+++++.|..+++|=.+++.. + ...|| ..+..|+.|....|.++
T Consensus 301 pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH------------------------------s~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 301 PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH------------------------------SAPPSCIRFYGSQGHFI 350 (910)
T ss_pred ceEeeccCCCceeEEEeeCCCCcchheeeccCC------------------------------CCCchheeeeccCcEEE
Confidence 5689999999999887775432 2 23345 66778888877889999
Q ss_pred EEEEcCCcEEEEeCCCCCCCCCccC-CCCCceeeeecc--cccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcce
Q 001287 266 AVGYIDGDILLWNTSTTASTKGQQT-GSRNNVVKLELS--SAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ 342 (1107)
.+.+.|++++.+++......+.... .......++... ......||..+...... .......+...-.+.
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R---E~~W~Nv~~~h~~~~----- 422 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR---EKEWDNVITAHKGKR----- 422 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch---hhhhcceeEEecCcc-----
Confidence 9999999999988764432221100 001111112221 11112244444222211 222222333332221
Q ss_pred EEEEEcCccccccccceeeeeeec------CCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccC
Q 001287 343 LTVLSLEWSSGMENLRCVSRVDIT------LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQE 416 (1107)
Q Consensus 343 ltvl~l~~~~~~~~~~~~~~~~l~------~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~ 416 (1107)
....|..... ..++..+. .+..+..++..+-+ +-.++.++.|.+-.|...+....-..-
T Consensus 423 --~~~tW~~~n~----~~G~~~L~~~~~~~~~~~~~av~vs~CG--------NF~~IG~S~G~Id~fNmQSGi~r~sf~- 487 (910)
T KOG1539|consen 423 --SAYTWNFRNK----TSGRHVLDPKRFKKDDINATAVCVSFCG--------NFVFIGYSKGTIDRFNMQSGIHRKSFG- 487 (910)
T ss_pred --eEEEEeccCc----ccccEEecCccccccCcceEEEEEeccC--------ceEEEeccCCeEEEEEcccCeeecccc-
Confidence 2222321110 01112222 22344444444432 245556777777777643321111000
Q ss_pred CCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCc
Q 001287 417 KKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDR 496 (1107)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~ 496 (1107)
.-+.|. .++..++...-++
T Consensus 488 ------------~~~ah~-------------------------------------------------~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 488 ------------DSPAHK-------------------------------------------------GEVTGLAVDGTNR 506 (910)
T ss_pred ------------cCcccc-------------------------------------------------CceeEEEecCCCc
Confidence 001111 1222234555667
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCcccee
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~ 576 (1107)
.+++++.||.+++||.....+... ..+ ..+++++.++.....|+.+..|-.|+++|..+.
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l~~~---------l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-------- 566 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVLKKS---------LRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-------- 566 (910)
T ss_pred eEEEccCcceEEEEecCCcceeee---------ecc---CCCcceeeeeehhhhhhhhcCceeEEEEEchhh--------
Confidence 899999999999999998875411 112 247899999999999999999999999998875
Q ss_pred eccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEE
Q 001287 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTW 656 (1107)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~f 656 (1107)
..+..|.+|...|++++|||||++|++++.|++|++||+.++.++=. -...++.+++.|
T Consensus 567 -----------------kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~----~~vd~~~~sls~ 625 (910)
T KOG1539|consen 567 -----------------KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG----LLVDSPCTSLSF 625 (910)
T ss_pred -----------------hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee----EecCCcceeeEE
Confidence 23566889999999999999999999999999999999999988722 236788999999
Q ss_pred eecccCccccCCCCCCCCCCCCCCCccEEEEEcCC-ceEEEEeC
Q 001287 657 TEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD-AKISIVGG 699 (1107)
Q Consensus 657 s~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~D-g~v~v~d~ 699 (1107)
+ |.+++|++...| .-|++|--
T Consensus 626 S----------------------PngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 626 S----------------------PNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred C----------------------CCCCEEEEEEecCceEEEEEc
Confidence 9 669999999999 66999974
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=5.1e-25 Score=223.22 Aligned_cols=203 Identities=14% Similarity=0.208 Sum_probs=168.4
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc--ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc
Q 001287 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~--~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl 105 (1107)
.-...||++.|..+.|+|+|.++|+|+.|..|.||+..+. ..-.+.+|.++|..|.|..|+..|+|++.|.+|++||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 3456899999999999999999999999999999997443 34467799999999999999999999999999999999
Q ss_pred CCCeeeeee-ccCCCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEE
Q 001287 106 ESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1107)
Q Consensus 106 ~s~~~~~~~-~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1107)
++++....+ .|..-|.++....-+. .+.+|+.||++++||.... ...++ ++. . -.++++.
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k--~~~~t---~~~-k------------yqltAv~ 181 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK--EAIKT---FEN-K------------YQLTAVG 181 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc--chhhc---ccc-c------------eeEEEEE
Confidence 999998887 5667788887655554 5567888999999998742 22221 211 1 3589999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC
Q 001287 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1107)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1107)
| .+.+..+.+|.-|+.|++||+..+.... ..|| ...|+.+. .+++|
T Consensus 182 f--~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh------------------------------~DtIt~ls-ls~~g 228 (338)
T KOG0265|consen 182 F--KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH------------------------------ADTITGLS-LSRYG 228 (338)
T ss_pred e--cccccceeeccccCceeeeccccCcceEEeecc------------------------------cCceeeEE-eccCC
Confidence 9 5577789999999999999998887654 5677 77889898 56999
Q ss_pred CEEEEEEcCCcEEEEeCCC
Q 001287 263 SILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 263 ~~l~sg~~dG~I~lWd~~~ 281 (1107)
.++.+-+.|.++++||+..
T Consensus 229 s~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred CccccccccceEEEEEecc
Confidence 9999999999999999963
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=2.4e-24 Score=272.85 Aligned_cols=198 Identities=17% Similarity=0.267 Sum_probs=160.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc--------ceeeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEE
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVW 103 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vW 103 (1107)
+|...|++++|+|++++||+|+.||.|+||+.... .......+...|.+++|++ ++.+|++++.|++|++|
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 47888999999999999999999999999997431 0112233456899999987 46899999999999999
Q ss_pred EcCCCeeeeee-ccCCCeEEEEEec-CCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 104 SLESRSLACCL-KWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 104 Dl~s~~~~~~~-~~~~~Vt~l~~~~-~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
|+.+++.+..+ .|.+.|++++|+| ++.+|++|+.||.|++|++.. +.... .+..+ ..|.+
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~~~---~~~~~-------------~~v~~ 622 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ--GVSIG---TIKTK-------------ANICC 622 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC--CcEEE---EEecC-------------CCeEE
Confidence 99999887766 6889999999996 678999999999999999864 33332 12221 45899
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEccCCEE--EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1107)
+.|++. ++.+|++|+.||.|++||+...+. ....+| ...|+++.|.
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h------------------------------~~~V~~v~f~- 670 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH------------------------------SKTVSYVRFV- 670 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCC------------------------------CCCEEEEEEe-
Confidence 999664 688899999999999999987642 334455 6789999984
Q ss_pred CCCCEEEEEEcCCcEEEEeCCC
Q 001287 260 SSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 260 pdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
++..|++++.||+|++||+..
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCC
Confidence 688999999999999999863
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=4.5e-25 Score=227.58 Aligned_cols=288 Identities=14% Similarity=0.221 Sum_probs=224.6
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecC
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~ 149 (1107)
.+.+|.++|+|++|.|...++++++.|++|+|||+.++++..++ +|...|..++|++...||+++++|+.|+.||++.
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~- 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY- 224 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh-
Confidence 45679999999999999899999999999999999999998877 5999999999999999999999999999999885
Q ss_pred CCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE-EEEeCCcccccccccc
Q 001287 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVV 228 (1107)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~-~~~~g~~~~~~~~~~~ 228 (1107)
.++++. +.+|- ..|.|+..||+ -.+|++++.|.+++|||+++... ..+.||
T Consensus 225 -nkvIR~---YhGHl------------S~V~~L~lhPT--ldvl~t~grDst~RvWDiRtr~~V~~l~GH---------- 276 (460)
T KOG0285|consen 225 -NKVIRH---YHGHL------------SGVYCLDLHPT--LDVLVTGGRDSTIRVWDIRTRASVHVLSGH---------- 276 (460)
T ss_pred -hhhHHH---hcccc------------ceeEEEecccc--ceeEEecCCcceEEEeeecccceEEEecCC----------
Confidence 344432 33443 78999999996 44699999999999999999755 456677
Q ss_pred CCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCcc
Q 001287 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRL 308 (1107)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (1107)
..+|+++.+. |....+++|+.|++|++||+..+....
T Consensus 277 --------------------~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agkt~~---------------------- 313 (460)
T KOG0285|consen 277 --------------------TNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGKTMI---------------------- 313 (460)
T ss_pred --------------------CCcceeEEee-cCCCceEEecCCceEEEeeeccCceeE----------------------
Confidence 7788888865 656679999999999999997541000
Q ss_pred ceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCc
Q 001287 309 PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHK 388 (1107)
Q Consensus 309 ~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~ 388 (1107)
+...-. -.+
T Consensus 314 -----------------------tlt~hk-------------------------------ksv----------------- 322 (460)
T KOG0285|consen 314 -----------------------TLTHHK-------------------------------KSV----------------- 322 (460)
T ss_pred -----------------------eeeccc-------------------------------cee-----------------
Confidence 000000 000
Q ss_pred ceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCC
Q 001287 389 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSH 468 (1107)
Q Consensus 389 ~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1107)
T Consensus 323 -------------------------------------------------------------------------------- 322 (460)
T KOG0285|consen 323 -------------------------------------------------------------------------------- 322 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCC
Q 001287 469 TQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN 548 (1107)
Q Consensus 469 ~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~ 548 (1107)
-+++.+|....+|+++.|. |+-|++..+.+. ..+.+|+.-|.+|+...|+
T Consensus 323 ------------------ral~lhP~e~~fASas~dn-ik~w~~p~g~f~-----------~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 323 ------------------RALCLHPKENLFASASPDN-IKQWKLPEGEFL-----------QNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred ------------------eEEecCCchhhhhccCCcc-ceeccCCccchh-----------hccccccceeeeeeeccCc
Confidence 0113445555788888774 899999888755 4588999999999998776
Q ss_pred CeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEe-----ecCcCEEEEEEcCCCCEEEEEeC
Q 001287 549 SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS-----LVNSPVRALQFTSSGAKLAVGFE 623 (1107)
Q Consensus 549 ~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~h~~~Vt~la~sp~~~~la~Gs~ 623 (1107)
++++|++.|.+..|++....+- |...+.. .-...|.+.+|...|..|++|..
T Consensus 373 -v~~~G~dng~~~fwdwksg~ny----------------------Q~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea 429 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKSGHNY----------------------QRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA 429 (460)
T ss_pred -eEEEcCCceEEEEEecCcCccc----------------------ccccccccCCccccccceeEEeecccCceEEeccC
Confidence 6677999999999999886321 1111111 12467999999999999999999
Q ss_pred CCeEEEEEcCC
Q 001287 624 CGRVAVLDMNL 634 (1107)
Q Consensus 624 dg~V~iwd~~~ 634 (1107)
|.+|++|.-..
T Consensus 430 dKtIk~~keDe 440 (460)
T KOG0285|consen 430 DKTIKMYKEDE 440 (460)
T ss_pred CcceEEEeccc
Confidence 99999997643
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=7.5e-25 Score=257.80 Aligned_cols=201 Identities=17% Similarity=0.367 Sum_probs=171.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc---eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc-CCCe
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL-ESRS 109 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~---~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl-~s~~ 109 (1107)
+...|+|+.|+|+|++||.++.|+.|++|+..... ...+.+|...|..++|+|++.+|++++.|++|+|||+ ..+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 37889999999999999999999999999995544 3344789999999999999999999999999999999 4546
Q ss_pred eeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 110 LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 110 ~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
.+..+ .|...|++++|+|+++++++|+.|++|+||++.. +++... +.+|. +.|++++|+|
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~~~---l~~hs------------~~is~~~f~~-- 298 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--GECVRK---LKGHS------------DGISGLAFSP-- 298 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--CeEEEe---eeccC------------CceEEEEECC--
Confidence 66666 8999999999999999999999999999999886 566644 78877 8999999987
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEE---EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQII---FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
++.+|++++.|+.|+|||+.++... ...++ .... .+++++|. |+|.+|
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~-~~~~~~fs-p~~~~l 349 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA---------------------------ENSA-PVTSVQFS-PNGKYL 349 (456)
T ss_pred CCCEEEEcCCCccEEEEECCCCceeeeecccCC---------------------------CCCC-ceeEEEEC-CCCcEE
Confidence 7888999999999999999999843 22222 0002 68889975 999999
Q ss_pred EEEEcCCcEEEEeCCCC
Q 001287 266 AVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~~ 282 (1107)
++++.|+.+++||+..+
T Consensus 350 l~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSG 366 (456)
T ss_pred EEecCCCeEEEEEccCC
Confidence 99999999999999754
No 45
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3.4e-23 Score=230.79 Aligned_cols=598 Identities=14% Similarity=0.146 Sum_probs=363.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCC---EEEEEeCCCcEEEEEc
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQG---FLISITNDNEIQVWSL 105 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~---~L~S~s~d~~I~vWDl 105 (1107)
.+-|........++.| +..+|.|. ...|.+||-... ....+.+|.++|+|+.|.|+.. +++|++.|+.|++|.+
T Consensus 9 ~~Vgc~R~~~v~sw~~-~~~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l 86 (764)
T KOG1063|consen 9 ISVGCNRVPKVSSWGP-GGLVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKL 86 (764)
T ss_pred eeeccccccccccccc-cceEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEE
Confidence 3445555555556644 55677776 477999998655 5668899999999999999876 8999999999999999
Q ss_pred CCCeeeeeeccC-CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 106 ESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 106 ~s~~~~~~~~~~-~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
+.....+.+..+ ..+.++++......+.+...++.+++|+...+.--+.+ ..++.... --..|+++
T Consensus 87 ~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~-~~rf~~k~------------~ipLcL~~ 153 (764)
T KOG1063|consen 87 RDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLA-VLRFEIKE------------AIPLCLAA 153 (764)
T ss_pred eehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeeh-heehhhhh------------HhhHHHhh
Confidence 966555554333 35666677665556666679999999998432211111 11222111 12456666
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCC---EEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEA---QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1107)
.|....-.+++|+.+..|.++.-... ++..+.|| ...|.++.|..+.
T Consensus 154 ~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH------------------------------~DWIrsl~f~~~~ 203 (764)
T KOG1063|consen 154 LKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGH------------------------------TDWIRSLAFARLG 203 (764)
T ss_pred hccCCcEEEEecCcceEEEEeccCCcceeEEEEeecc------------------------------chhhhhhhhhccC
Confidence 66322333567777888888876654 34567788 6667777776343
Q ss_pred C--CEEEEEEcCCcEEEEeCCCCCCCCC------ccCCCCCceeee----ec------ccccCccceEEEEeecccccCC
Q 001287 262 G--SILAVGYIDGDILLWNTSTTASTKG------QQTGSRNNVVKL----EL------SSAERRLPVIVLHWSTNKESRS 323 (1107)
Q Consensus 262 g--~~l~sg~~dG~I~lWd~~~~~~~~~------~~~~~~~~~~~l----~~------~~~~~~~~i~~~~w~~~~~~~~ 323 (1107)
+ -+|++++.|..|++|.+.-...... ....++.++... .. .-..+..=+..++|..
T Consensus 204 ~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p------ 277 (764)
T KOG1063|consen 204 GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP------ 277 (764)
T ss_pred CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc------
Confidence 3 3789999999999999864432211 111111111110 00 0001122233444433
Q ss_pred CCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeec----CCCccceEEEccCCCCCCCCCcceEEEEccCCe
Q 001287 324 NIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT----LTGSFADMILLSSAGATVGNHKADLFVLTSPGQ 399 (1107)
Q Consensus 324 ~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~----~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~ 399 (1107)
.+..|+++..|. .+-+|.......+ +...+.++ ..+.+++..+.|++. .++.-...|.
T Consensus 278 --~~~~LLSASaDk-------smiiW~pd~~tGi-Wv~~vRlGe~gg~a~GF~g~lw~~n~~--------~ii~~g~~Gg 339 (764)
T KOG1063|consen 278 --EGLDLLSASADK-------SMIIWKPDENTGI-WVDVVRLGEVGGSAGGFWGGLWSPNSN--------VIIAHGRTGG 339 (764)
T ss_pred --chhhheecccCc-------ceEEEecCCccce-EEEEEEeecccccccceeeEEEcCCCC--------EEEEecccCc
Confidence 334555666665 5556655433222 11112222 133577777777632 3444466677
Q ss_pred EEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccc---
Q 001287 400 LHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKW--- 476 (1107)
Q Consensus 400 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--- 476 (1107)
++.|.... +..|
T Consensus 340 ~hlWkt~d-----------------------------------------------------------------~~~w~~~ 354 (764)
T KOG1063|consen 340 FHLWKTKD-----------------------------------------------------------------KTFWTQE 354 (764)
T ss_pred EEEEeccC-----------------------------------------------------------------ccceeec
Confidence 77765111 0112
Q ss_pred cccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEecc
Q 001287 477 PLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE 556 (1107)
Q Consensus 477 p~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~ 556 (1107)
|..+||...+.-++.+|.|++|+|.+.|-|-|++-.-+.... ... +. ...-|...++|++|-+....+++|..
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-wHE----ia--RPQiHGyDl~c~~~vn~~~~FVSgAd 427 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-WHE----IA--RPQIHGYDLTCLSFVNEDLQFVSGAD 427 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccc-eee----ec--ccccccccceeeehccCCceeeeccc
Confidence 455666666666789999999999999999999865532211 111 10 12357778999999997677888888
Q ss_pred CceEEEEEecCCC-----------C----C------------ccceeec-c--CcCc----ce-----------ecccCC
Q 001287 557 FGLVYIYNLNGSL-----------D----A------------KNFLFVL-E--TKSE----VH-----------ALPEGK 591 (1107)
Q Consensus 557 dg~V~vw~~~~~~-----------~----~------------~~~~~~~-~--~~~~----~~-----------~~~~~~ 591 (1107)
...+|+|+....- + + .+..+.. + +.++ .. .-+.++
T Consensus 428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 8999999865420 0 0 0011110 0 0011 00 000011
Q ss_pred ------cceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecc
Q 001287 592 ------ISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG-----RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFK 660 (1107)
Q Consensus 592 ------g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg-----~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~ 660 (1107)
-+.-+..+.+|.-.|.+++++|+++++|++.... -|++|+..+-..+ ..+.+|+-.|+.|+|+
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---~~L~~HsLTVT~l~FS--- 581 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---QELEGHSLTVTRLAFS--- 581 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---heecccceEEEEEEEC---
Confidence 1111344668999999999999999999987543 5899999887666 4678899999999999
Q ss_pred cCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccceeeEEEEecCCCCCCccccccccc
Q 001287 661 NTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSA 740 (1107)
Q Consensus 661 ~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 740 (1107)
|++.+|++.+.|.++.+|....+.......-..+-
T Consensus 582 -------------------pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~-------------------------- 616 (764)
T KOG1063|consen 582 -------------------PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKA-------------------------- 616 (764)
T ss_pred -------------------CCCcEEEEeecCceEEeeeeecccchhhhhccccc--------------------------
Confidence 77999999999999999986332211000000111
Q ss_pred cccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecC-eeEEEeccccccccceeeeee-cCC-Ccce
Q 001287 741 EENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQGNNKTVQKV-KHK-NRCC 817 (1107)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~-~l~v~sl~~~~~g~~~~i~k~-~~~-~~~~ 817 (1107)
|.-.+=+-.|.+. +.++++||.| .|+||..+.. .-+.+.+. .+. ..|.
T Consensus 617 ------------------------HtRIIWdcsW~pd--e~~FaTaSRDK~VkVW~~~~~---~d~~i~~~a~~~~~~aV 667 (764)
T KOG1063|consen 617 ------------------------HTRIIWDCSWSPD--EKYFATASRDKKVKVWEEPDL---RDKYISRFACLKFSLAV 667 (764)
T ss_pred ------------------------cceEEEEcccCcc--cceeEEecCCceEEEEeccCc---hhhhhhhhchhccCCce
Confidence 2211222234444 7789999977 9999999872 11333332 222 2333
Q ss_pred e----eeeeecCCceeEEEEEeecCcEEEeecCCcc
Q 001287 818 W----ASTIEKDEKVCGLLLLFQTGAVQIRSLPDLE 849 (1107)
Q Consensus 818 ~----~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~ 849 (1107)
- .+++.. ++.-+++++..+|.|.++..+..+
T Consensus 668 TAv~~~~~~~~-e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 668 TAVAYLPVDHN-EKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred eeEEeeccccc-cccceEEEEecccEEEEEeccccc
Confidence 3 333333 456689999999999999988433
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=4.7e-24 Score=235.81 Aligned_cols=283 Identities=19% Similarity=0.330 Sum_probs=221.4
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC
Q 001287 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1107)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~ 150 (1107)
+.+|..+|++++|+|++.+|++++.|+.|.+||+.+++..... .+...+..+.+.++++++++++.+|.|++|++...
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~- 83 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG- 83 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-
Confidence 4479999999999999999999999999999999988766555 56778889999999999999999999999998742
Q ss_pred CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe-CCccccccccccC
Q 001287 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVD 229 (1107)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~-g~~~~~~~~~~~~ 229 (1107)
+.. ..+..+. ..|.++.|+| ++..+++++.+|.|.+||+.+++..... .|
T Consensus 84 -~~~---~~~~~~~------------~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------- 134 (289)
T cd00200 84 -ECV---RTLTGHT------------SYVSSVAFSP--DGRILSSSSRDKTIKVWDVETGKCLTTLRGH----------- 134 (289)
T ss_pred -cce---EEEeccC------------CcEEEEEEcC--CCCEEEEecCCCeEEEEECCCcEEEEEeccC-----------
Confidence 222 2244443 5799999988 4666666666999999999977655433 23
Q ss_pred CCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccc
Q 001287 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 309 (1107)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (1107)
...|++++|. |++.++++++.||.|++||+.+.+...
T Consensus 135 -------------------~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~----------------------- 171 (289)
T cd00200 135 -------------------TDWVNSVAFS-PDGTFVASSSQDGTIKLWDLRTGKCVA----------------------- 171 (289)
T ss_pred -------------------CCcEEEEEEc-CcCCEEEEEcCCCcEEEEEccccccce-----------------------
Confidence 6679999986 889999988889999999986331000
Q ss_pred eEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcc
Q 001287 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKA 389 (1107)
Q Consensus 310 i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~ 389 (1107)
.+ . .
T Consensus 172 --~~---------------------------------~----~------------------------------------- 175 (289)
T cd00200 172 --TL---------------------------------T----G------------------------------------- 175 (289)
T ss_pred --eE---------------------------------e----c-------------------------------------
Confidence 00 0 0
Q ss_pred eEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCC
Q 001287 390 DLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHT 469 (1107)
Q Consensus 390 ~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1107)
+.
T Consensus 176 -------------------------------------------~~----------------------------------- 177 (289)
T cd00200 176 -------------------------------------------HT----------------------------------- 177 (289)
T ss_pred -------------------------------------------Cc-----------------------------------
Confidence 00
Q ss_pred ccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCC
Q 001287 470 QAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1107)
Q Consensus 470 ~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~ 549 (1107)
..+..+.++++++.+++++.||.|++||+..+... ..+..|...|.+++|++++.
T Consensus 178 --------------~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 178 --------------GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL-----------GTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred --------------cccceEEECCCcCEEEEecCCCcEEEEECCCCcee-----------cchhhcCCceEEEEEcCCCc
Confidence 00011245566667888888999999999876644 23447778999999999988
Q ss_pred eEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q 001287 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1107)
Q Consensus 550 ~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~i 629 (1107)
++++++.+|.|++|++... .+...+..|...|++++|+|++++|++++.||.|++
T Consensus 233 ~~~~~~~~~~i~i~~~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTG-------------------------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred EEEEEcCCCcEEEEEcCCc-------------------------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 9998888999999998764 244556688899999999999999999999999999
Q ss_pred EE
Q 001287 630 LD 631 (1107)
Q Consensus 630 wd 631 (1107)
|+
T Consensus 288 w~ 289 (289)
T cd00200 288 WD 289 (289)
T ss_pred cC
Confidence 96
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.7e-24 Score=215.06 Aligned_cols=292 Identities=15% Similarity=0.230 Sum_probs=223.7
Q ss_pred eeeCCCCCCEEEEEEEeC-CCEEEEEeCCCcEEEEEcCCC---eeeeee--ccCCCeEEEEEecCCCEEEEEcCCCcEEE
Q 001287 70 LLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLESR---SLACCL--KWESNITAFSVISGSHFMYIGDENGLMSV 143 (1107)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWDl~s~---~~~~~~--~~~~~Vt~l~~~~~~~~l~~g~~dg~V~v 143 (1107)
..+.+|.+.|..++|+|. |..|+|++.|+.|++|+..++ .+.+.+ .|...|..++|+|.+++|++|+-|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 356789999999999998 778999999999999999853 233333 68889999999999999999999999999
Q ss_pred EEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE---EEE-EeCCc
Q 001287 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---IIF-VGGGK 219 (1107)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~---~~~-~~g~~ 219 (1107)
|.-...+-+.+ -.+.+|+ ..|-|++|++ +|.+|+++++|..|-||.+.++. +.. +.+|
T Consensus 88 w~k~~~efecv---~~lEGHE------------nEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H- 149 (312)
T KOG0645|consen 88 WKKEDGEFECV---ATLEGHE------------NEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH- 149 (312)
T ss_pred eecCCCceeEE---eeeeccc------------cceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-
Confidence 98554333333 3478887 8899999977 79999999999999999988653 222 2334
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeee
Q 001287 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKL 299 (1107)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l 299 (1107)
...|..+.|+ |....|++++.|.+|++|+-..+.
T Consensus 150 -----------------------------tqDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dd---------------- 183 (312)
T KOG0645|consen 150 -----------------------------TQDVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDD---------------- 183 (312)
T ss_pred -----------------------------cccccEEEEc-CCcceeEEeccCCeEEEEeecCCC----------------
Confidence 7788999998 999999999999999999875210
Q ss_pred ecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccC
Q 001287 300 ELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSS 379 (1107)
Q Consensus 300 ~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~ 379 (1107)
.|.+. +.|
T Consensus 184 --------------dW~c~-------------------------~tl--------------------------------- 191 (312)
T KOG0645|consen 184 --------------DWECV-------------------------QTL--------------------------------- 191 (312)
T ss_pred --------------CeeEE-------------------------EEe---------------------------------
Confidence 01110 000
Q ss_pred CCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHH
Q 001287 380 AGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIA 459 (1107)
Q Consensus 380 ~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~ 459 (1107)
T Consensus 192 -------------------------------------------------------------------------------- 191 (312)
T KOG0645|consen 192 -------------------------------------------------------------------------------- 191 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCe
Q 001287 460 TFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPV 539 (1107)
Q Consensus 460 ~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~V 539 (1107)
+|+.+.+.+++|.+.|..+++++.|++|+||..-+.. -..|..++
T Consensus 192 --------------------~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------------~~~~sr~~ 236 (312)
T KOG0645|consen 192 --------------------DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------------SGMHSRAL 236 (312)
T ss_pred --------------------cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---------------chhcccce
Confidence 0111111233677888899999999999999865333 22567789
Q ss_pred EEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEE-EEeecCcCEEEEEEcCC-CCE
Q 001287 540 STLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRA-VFSLVNSPVRALQFTSS-GAK 617 (1107)
Q Consensus 540 t~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~h~~~Vt~la~sp~-~~~ 617 (1107)
..++|. +..|++++.|+.++||.-+....+.+.. .+. .-..|...|.+++|+|. ..+
T Consensus 237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-------------------l~~~~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-------------------LLAKKEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-------------------HHHhhhcccccccceEEEcCCCCCc
Confidence 999998 7789999999999999988654432221 111 22468889999999994 679
Q ss_pred EEEEeCCCeEEEEEcC
Q 001287 618 LAVGFECGRVAVLDMN 633 (1107)
Q Consensus 618 la~Gs~dg~V~iwd~~ 633 (1107)
|++|++||.|++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999874
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=4.7e-24 Score=235.83 Aligned_cols=199 Identities=22% Similarity=0.334 Sum_probs=165.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
||++.|++++|+|++++|++|+.||.|++|+..... ......|..++..+.|++++.+|++++.++.|.+||+.+++.+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 788999999999999999999999999999996553 4456678899999999999999999999999999999997666
Q ss_pred eee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 112 ~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
..+ .+...|.++.++++++++++++.+|.|++|++.. ++.. +.+..|. ..|.++.|+| ++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~---~~~~~~~------------~~i~~~~~~~--~~ 147 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKCL---TTLRGHT------------DWVNSVAFSP--DG 147 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--cEEE---EEeccCC------------CcEEEEEEcC--cC
Confidence 655 5667899999999988999998899999999873 2333 2244444 6799999988 46
Q ss_pred CEEEEEECCCeEEEEEccCCEEEEEe-CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 191 NRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
.++++++.+|.|++||+.+++..... .| ...|.+++|. |+++.+++++
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------------------------------~~~i~~~~~~-~~~~~l~~~~ 196 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGH------------------------------TGEVNSVAFS-PDGEKLLSSS 196 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecC------------------------------ccccceEEEC-CCcCEEEEec
Confidence 66666666999999999877654332 22 5579999986 9999999999
Q ss_pred cCCcEEEEeCCC
Q 001287 270 IDGDILLWNTST 281 (1107)
Q Consensus 270 ~dG~I~lWd~~~ 281 (1107)
.||.|++||+..
T Consensus 197 ~~~~i~i~d~~~ 208 (289)
T cd00200 197 SDGTIKLWDLST 208 (289)
T ss_pred CCCcEEEEECCC
Confidence 999999999864
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=7.2e-26 Score=237.68 Aligned_cols=199 Identities=14% Similarity=0.268 Sum_probs=168.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~ 112 (1107)
+...|..+.|.|+|+.|.+|+..|.+.||+.... -.+.+..|..+|+++.|++++.+++|++.+|.|++|+..-..+..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 3456888999999999999999999999998432 223567899999999999999999999999999999988776655
Q ss_pred eeccC-CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 113 CLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 113 ~~~~~-~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
...|. ..|.+++|+|....+++++.||+|+||++.......+ +.+|. --|.++.|||. ..
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v-----L~GHg------------wdVksvdWHP~--kg 235 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV-----LRGHG------------WDVKSVDWHPT--KG 235 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe-----eccCC------------CCcceeccCCc--cc
Confidence 55554 8899999999999999999999999999864322222 55665 56999999995 44
Q ss_pred EEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001287 192 RVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1107)
Q Consensus 192 ~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1107)
++++++.|..|++||.+++.++. +.+| ...|..+.|. +++++|++++.
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~H------------------------------KntVl~~~f~-~n~N~Llt~sk 284 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGH------------------------------KNTVLAVKFN-PNGNWLLTGSK 284 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhc------------------------------cceEEEEEEc-CCCCeeEEccC
Confidence 59999999999999999998765 3444 7789999986 99999999999
Q ss_pred CCcEEEEeCCCC
Q 001287 271 DGDILLWNTSTT 282 (1107)
Q Consensus 271 dG~I~lWd~~~~ 282 (1107)
|..++++|+.+.
T Consensus 285 D~~~kv~DiR~m 296 (464)
T KOG0284|consen 285 DQSCKVFDIRTM 296 (464)
T ss_pred CceEEEEehhHh
Confidence 999999999743
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=3.3e-24 Score=217.36 Aligned_cols=284 Identities=17% Similarity=0.264 Sum_probs=221.3
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|++.|..+.|+|++.++++|+.|..|.+|+...+-... ..+.+|. ++|..+.|.+ ++..++
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~----~~lkgHs------------gAVM~l~~~~--d~s~i~ 106 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF----WVLKGHS------------GAVMELHGMR--DGSHIL 106 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce----eeecccc------------ceeEeeeecc--CCCEEE
Confidence 688999999999999999999999999999965432222 2356776 8999999966 888999
Q ss_pred EEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC-CEEEEEEcCC
Q 001287 195 IAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDG 272 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~dG 272 (1107)
+++.|.+|+.||.++++.+. +.+| .+-|.+++ .+..| ..+.+|+.||
T Consensus 107 S~gtDk~v~~wD~~tG~~~rk~k~h------------------------------~~~vNs~~-p~rrg~~lv~SgsdD~ 155 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIRKHKGH------------------------------TSFVNSLD-PSRRGPQLVCSGSDDG 155 (338)
T ss_pred EecCCceEEEEecccceeeehhccc------------------------------cceeeecC-ccccCCeEEEecCCCc
Confidence 99999999999999998754 5555 34444444 33334 4567788999
Q ss_pred cEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccc
Q 001287 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1107)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1107)
++++||+......+. +. .+.
T Consensus 156 t~kl~D~R~k~~~~t-----------~~-----~ky-------------------------------------------- 175 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKT-----------FE-----NKY-------------------------------------------- 175 (338)
T ss_pred eEEEEeecccchhhc-----------cc-----cce--------------------------------------------
Confidence 999999975432210 00 000
Q ss_pred cccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCccccc
Q 001287 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1107)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1107)
++.
T Consensus 176 ----------------------------------------------qlt------------------------------- 178 (338)
T KOG0265|consen 176 ----------------------------------------------QLT------------------------------- 178 (338)
T ss_pred ----------------------------------------------eEE-------------------------------
Confidence 000
Q ss_pred CCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeC
Q 001287 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1107)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~ 512 (1107)
.+.+...+..+++|+-|+.|++||+
T Consensus 179 -------------------------------------------------------Av~f~d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 179 -------------------------------------------------------AVGFKDTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred -------------------------------------------------------EEEecccccceeeccccCceeeecc
Confidence 0012223336788999999999999
Q ss_pred CCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCc
Q 001287 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1107)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 592 (1107)
...... ..+.||..+|+.|..+++|.++.+-+-|.++++|++.... .+
T Consensus 204 r~~d~~-----------~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~---------------------p~ 251 (338)
T KOG0265|consen 204 RKNDGL-----------YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA---------------------PS 251 (338)
T ss_pred ccCcce-----------EEeecccCceeeEEeccCCCccccccccceEEEEEecccC---------------------CC
Confidence 877655 4588999999999999999999999999999999998752 23
Q ss_pred ceeEEEEeecC----cCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCC
Q 001287 593 SLCRAVFSLVN----SPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKN 668 (1107)
Q Consensus 593 ~~~~~~~~~h~----~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~ 668 (1107)
..|+..+.+|. .....++|||+++.+..|+.|..|++||..+..++| .++||...|.+++|.
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly---klpGh~gsvn~~~Fh----------- 317 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY---KLPGHYGSVNEVDFH----------- 317 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE---EcCCcceeEEEeeec-----------
Confidence 35778887753 234567899999999999999999999999988886 568999999999999
Q ss_pred CCCCCCCCCCCCCccEEEEEcCCceEEE
Q 001287 669 PNHSEREVPVNPAEEVIIVLFKDAKISI 696 (1107)
Q Consensus 669 p~~~~~~~~~~~~~~~L~s~s~Dg~v~v 696 (1107)
|...+|.+++.|.+|++
T Consensus 318 -----------p~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 318 -----------PTEPIILSCSSDKTIYL 334 (338)
T ss_pred -----------CCCcEEEEeccCceeEe
Confidence 55788999999999875
No 51
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.5e-25 Score=228.21 Aligned_cols=289 Identities=15% Similarity=0.239 Sum_probs=236.4
Q ss_pred eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 109 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 109 ~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
...+..++...|+.+-+.|.-..++++++|++|++|++.. +++.. .+.+|. ++|..|+|+.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t--g~~e~---~LrGHt------------~sv~di~~~a-- 160 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET--GELER---SLRGHT------------DSVFDISFDA-- 160 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccc--hhhhh---hhhccc------------cceeEEEEec--
Confidence 3334447888999999999999999999999999999875 45543 367776 7899999955
Q ss_pred CCCEEEEEECCCeEEEEEccCC-E-EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEE
Q 001287 189 SGNRVLIAYENALVILWDVSEA-Q-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~-~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1107)
.|+++++++.|-.+.+||..+. + +....+| +-.|.++++. |.|.+|+
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh------------------------------~h~vS~V~f~-P~gd~il 209 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGH------------------------------EHGVSSVFFL-PLGDHIL 209 (406)
T ss_pred CccEEEecCCccchhheeHHHHHHHHHHhcCc------------------------------ccceeeEEEE-ecCCeee
Confidence 6888999999998999999873 2 2334455 6679999987 9999999
Q ss_pred EEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEE
Q 001287 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1107)
Q Consensus 267 sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl 346 (1107)
+++.|.+|+.|++.++..... +.+
T Consensus 210 S~srD~tik~We~~tg~cv~t--------------------------------------------~~~------------ 233 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVKT--------------------------------------------FPG------------ 233 (406)
T ss_pred ecccccceeEEecccceeEEe--------------------------------------------ccC------------
Confidence 999999999999986521000 000
Q ss_pred EcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccC
Q 001287 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1107)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1107)
T Consensus 234 -------------------------------------------------------------------------------- 233 (406)
T KOG0295|consen 234 -------------------------------------------------------------------------------- 233 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCc
Q 001287 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS 506 (1107)
Q Consensus 427 ~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~Dgt 506 (1107)
|++-+.+++.+.||.++++++.|.+
T Consensus 234 -------------------------------------------------------h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 234 -------------------------------------------------------HSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred -------------------------------------------------------chHhEEEEEecCCeeEEEecCCCce
Confidence 0000012245567779999999999
Q ss_pred EEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCC---------------CeEEEeccCceEEEEEecCCCCC
Q 001287 507 VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN---------------SSLAVGNEFGLVYIYNLNGSLDA 571 (1107)
Q Consensus 507 IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~---------------~~Lasg~~dg~V~vw~~~~~~~~ 571 (1107)
|++|-+.+..+. ..+.+|..+|-|++|.|.. .+|.+++.|++|++|++++.
T Consensus 259 l~vW~~~t~~~k-----------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg--- 324 (406)
T KOG0295|consen 259 LRVWVVATKQCK-----------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG--- 324 (406)
T ss_pred EEEEEeccchhh-----------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---
Confidence 999999988766 5588999999999997632 48999999999999999986
Q ss_pred ccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCce
Q 001287 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1107)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V 651 (1107)
.|+.++.+|..-|..++|+|-|+||+++.+|+++++||++.+.+. +.+..|..-|
T Consensus 325 ----------------------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm---k~~~ah~hfv 379 (406)
T KOG0295|consen 325 ----------------------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM---KTLEAHEHFV 379 (406)
T ss_pred ----------------------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee---eccCCCccee
Confidence 589999999999999999999999999999999999999999988 5777899999
Q ss_pred EEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
+++.|... ..++++|+-|.++.||.-
T Consensus 380 t~lDfh~~----------------------~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLDFHKT----------------------APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCCC----------------------CceEEeccccceeeeeec
Confidence 99999833 558999999999999963
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=1.4e-25 Score=240.79 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=170.2
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeC--CCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC
Q 001287 32 YGIPATASILAFDH-IQRLLAIATLDGRIKVIGG--DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1107)
Q Consensus 32 ~G~~~~i~~lafsp-~~~~LA~Gs~dg~I~iw~~--~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~ 108 (1107)
.||+..|+++.|-| .+.+|++|+.|+.|+||++ +...+....+|..+|+.++|+++|..++|+|.|+.|++||+++|
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 69999999999999 8999999999999999998 34555688899999999999999999999999999999999999
Q ss_pred eeeeeeccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 109 SLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 109 ~~~~~~~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
+++..+.....++|+.|.|++ +.+++|..|+.|+.||+.. +++++. +..|- ++|..+.|-|
T Consensus 291 ~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvqe---Yd~hL------------g~i~~i~F~~- 352 (503)
T KOG0282|consen 291 QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQE---YDRHL------------GAILDITFVD- 352 (503)
T ss_pred eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccc--hHHHHH---HHhhh------------hheeeeEEcc-
Confidence 999999999999999999999 7889999999999999775 566653 33332 7899999966
Q ss_pred CCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 188 ~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
++.++++++.|+.|+||+....-.+...... +.-...|+.- .|++.++++
T Consensus 353 -~g~rFissSDdks~riWe~~~~v~ik~i~~~----------------------------~~hsmP~~~~-~P~~~~~~a 402 (503)
T KOG0282|consen 353 -EGRRFISSSDDKSVRIWENRIPVPIKNIADP----------------------------EMHTMPCLTL-HPNGKWFAA 402 (503)
T ss_pred -CCceEeeeccCccEEEEEcCCCccchhhcch----------------------------hhccCcceec-CCCCCeehh
Confidence 7999999999999999999887654432110 0223345553 499999999
Q ss_pred EEcCCcEEEEeCC
Q 001287 268 GYIDGDILLWNTS 280 (1107)
Q Consensus 268 g~~dG~I~lWd~~ 280 (1107)
-+.|..|.++.+.
T Consensus 403 Qs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 403 QSMDNYIAIFSTV 415 (503)
T ss_pred hccCceEEEEecc
Confidence 9999999998864
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6.3e-24 Score=250.00 Aligned_cols=291 Identities=19% Similarity=0.318 Sum_probs=231.5
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe--eeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~--~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
+...|...|+++.|+++|.+|++++.++.|++|+..+.. .+..+ .|...|..++|+|++.++++|+.|++|+||++
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~- 232 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL- 232 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec-
Confidence 334457799999999999999999999999999997777 55554 78889999999999999999999999999999
Q ss_pred cCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCcccccccc
Q 001287 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDG 226 (1107)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~ 226 (1107)
...+...+ .+.+|. ..|++++|+| .++++++|+.|++|+|||+.++++.. +.+|
T Consensus 233 ~~~~~~~~---~l~gH~------------~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-------- 287 (456)
T KOG0266|consen 233 KDDGRNLK---TLKGHS------------TYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-------- 287 (456)
T ss_pred cCCCeEEE---EecCCC------------CceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeecc--------
Confidence 33345553 377887 8999999999 56889999999999999999987755 4455
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccC
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (1107)
...|++++| +++|+.|++++.||.|++||+.++... ..+
T Consensus 288 ----------------------s~~is~~~f-~~d~~~l~s~s~d~~i~vwd~~~~~~~----------~~~-------- 326 (456)
T KOG0266|consen 288 ----------------------SDGISGLAF-SPDGNLLVSASYDGTIRVWDLETGSKL----------CLK-------- 326 (456)
T ss_pred ----------------------CCceEEEEE-CCCCCEEEEcCCCccEEEEECCCCcee----------eee--------
Confidence 778999996 599999999999999999999765200 000
Q ss_pred ccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCC
Q 001287 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1107)
Q Consensus 307 ~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~ 386 (1107)
.+ .+ ..
T Consensus 327 -----~~------------------~~-~~-------------------------------------------------- 332 (456)
T KOG0266|consen 327 -----LL------------------SG-AE-------------------------------------------------- 332 (456)
T ss_pred -----cc------------------cC-CC--------------------------------------------------
Confidence 00 00 00
Q ss_pred CcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccC
Q 001287 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1107)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1107)
.+
T Consensus 333 -----------------------------------------------~~------------------------------- 334 (456)
T KOG0266|consen 333 -----------------------------------------------NS------------------------------- 334 (456)
T ss_pred -----------------------------------------------CC-------------------------------
Confidence 00
Q ss_pred CCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCC---eEEEE
Q 001287 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP---VSTLS 543 (1107)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~---Vt~l~ 543 (1107)
. .+..+.++|++.++++++.|+++++||+..+.+. ....+|... +.+..
T Consensus 335 ----------------~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-----------~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 335 ----------------A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-----------GTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ----------------C-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-----------eeecccCCcceeEeccc
Confidence 0 1123367889999999999999999999988766 334455543 44445
Q ss_pred EEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeec-CcCEEEEEEcCCCCEEEEEe
Q 001287 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NSPVRALQFTSSGAKLAVGF 622 (1107)
Q Consensus 544 fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-~~~Vt~la~sp~~~~la~Gs 622 (1107)
+++.+.++++|+.|+.|.+|++.... .+..+.+| ...|..++++|...++++++
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~-------------------------~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGG-------------------------ILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccc-------------------------hhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 67899999999999999999998741 34556788 89999999999999999998
Q ss_pred --CCCeEEEEEcC
Q 001287 623 --ECGRVAVLDMN 633 (1107)
Q Consensus 623 --~dg~V~iwd~~ 633 (1107)
.|+.+++|...
T Consensus 442 ~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLIRLWKYD 454 (456)
T ss_pred cCCCceEEEecCC
Confidence 78999999764
No 54
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.8e-25 Score=233.27 Aligned_cols=286 Identities=15% Similarity=0.190 Sum_probs=227.1
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
+....|..+.|.|+|+.|++|+..|.+.+|+...-.-+ ..+..|+ .+|.++.|++ ++..++
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE-----tilQaHD------------s~Vr~m~ws~--~g~wmi 154 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE-----TILQAHD------------SPVRTMKWSH--NGTWMI 154 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHH-----HHhhhhc------------ccceeEEEcc--CCCEEE
Confidence 34567999999999999999999999999995321001 1123444 8999999976 788999
Q ss_pred EEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcE
Q 001287 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I 274 (1107)
+|..+|.|++|+..-..+.....| +...|++++| +|+...+++++.||+|
T Consensus 155 SgD~gG~iKyWqpnmnnVk~~~ah-----------------------------h~eaIRdlaf-SpnDskF~t~SdDg~i 204 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVKIIQAH-----------------------------HAEAIRDLAF-SPNDSKFLTCSDDGTI 204 (464)
T ss_pred EcCCCceEEecccchhhhHHhhHh-----------------------------hhhhhheecc-CCCCceeEEecCCCeE
Confidence 999999999999887766655544 1467999996 5899999999999999
Q ss_pred EEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccc
Q 001287 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1107)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1107)
+|||...... .+.
T Consensus 205 kiWdf~~~ke------------------------------------------e~v------------------------- 217 (464)
T KOG0284|consen 205 KIWDFRMPKE------------------------------------------ERV------------------------- 217 (464)
T ss_pred EEEeccCCch------------------------------------------hhe-------------------------
Confidence 9999853210 000
Q ss_pred cccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCC
Q 001287 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1107)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1107)
T Consensus 218 -------------------------------------------------------------------------------- 217 (464)
T KOG0284|consen 218 -------------------------------------------------------------------------------- 217 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001287 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1107)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~ 514 (1107)
+.|+.+ .+.++..+|...+|++|+.|..|++||..+
T Consensus 218 -------------------------------------------L~GHgw-dVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 218 -------------------------------------------LRGHGW-DVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred -------------------------------------------eccCCC-CcceeccCCccceeEEccCCceeEeecCCC
Confidence 111111 112335667777999999999999999999
Q ss_pred CceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcce
Q 001287 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1107)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 594 (1107)
+.+. .++.+|...|.++.|++++++|++++.|..+++||++...
T Consensus 254 g~cl-----------~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk------------------------- 297 (464)
T KOG0284|consen 254 GSCL-----------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK------------------------- 297 (464)
T ss_pred cchh-----------hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-------------------------
Confidence 9876 5688999999999999999999999999999999998542
Q ss_pred eEEEEeecCcCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCC
Q 001287 595 CRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSE 673 (1107)
Q Consensus 595 ~~~~~~~h~~~Vt~la~sp~-~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~ 673 (1107)
-+.++++|...|++++|+|- -.+|++|+.||.|..|.+.....+. ..-.+|...|.+|+|.
T Consensus 298 El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~--~i~~AHd~~iwsl~~h---------------- 359 (464)
T KOG0284|consen 298 ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG--EIPPAHDGEIWSLAYH---------------- 359 (464)
T ss_pred HHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc--CCCcccccceeeeecc----------------
Confidence 24567899999999999994 4689999999999999998444331 1235699999999999
Q ss_pred CCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 674 REVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 674 ~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
|-+.+|++|+.|.++++|...
T Consensus 360 ------PlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 360 ------PLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ------ccceeEeecCCCcceeeeccC
Confidence 558899999999999999854
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=226.05 Aligned_cols=281 Identities=16% Similarity=0.185 Sum_probs=213.5
Q ss_pred ccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC
Q 001287 478 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 557 (1107)
Q Consensus 478 ~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d 557 (1107)
+.-|..+...|+.|+||+++|++|+.||.|.+||..+++++.-.+... . -.+--+..+|.|+.||.|+.+||+|+.|
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA--q-d~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA--Q-DNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh--h-cceeecccceEEEeecccHHHhhccCcC
Confidence 445666666788999999999999999999999999998762222111 1 1133567799999999999999999999
Q ss_pred ceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEe-ecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe
Q 001287 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS-LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS 636 (1107)
Q Consensus 558 g~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~ 636 (1107)
|.|+||.+.+. +|+..|. .|+..|+|+.||.|+..+.+++-|-+|+|..+.+++
T Consensus 285 GkIKvWri~tG-------------------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 285 GKIKVWRIETG-------------------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred CcEEEEEEecc-------------------------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence 99999999987 5777776 799999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccc-c
Q 001287 637 VLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKK-K 715 (1107)
Q Consensus 637 ~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~-~ 715 (1107)
++ ..+.||++-|+...|+ +++..+++++.||+|.||+..+++++.++ +|.. .
T Consensus 340 ~L---KEfrGHsSyvn~a~ft----------------------~dG~~iisaSsDgtvkvW~~KtteC~~Tf--k~~~~d 392 (508)
T KOG0275|consen 340 CL---KEFRGHSSYVNEATFT----------------------DDGHHIISASSDGTVKVWHGKTTECLSTF--KPLGTD 392 (508)
T ss_pred hH---HHhcCccccccceEEc----------------------CCCCeEEEecCCccEEEecCcchhhhhhc--cCCCCc
Confidence 98 7889999999999999 56888999999999999999999999887 2222 1
Q ss_pred ceeeEEEEecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEe-cCeeEEE
Q 001287 716 VIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCC-EDSVRLY 794 (1107)
Q Consensus 716 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~-e~~l~v~ 794 (1107)
-.+.++.++ |++ ..++++|. .+.+++.
T Consensus 393 ~~vnsv~~~----------------PKn------------------------------------peh~iVCNrsntv~im 420 (508)
T KOG0275|consen 393 YPVNSVILL----------------PKN------------------------------------PEHFIVCNRSNTVYIM 420 (508)
T ss_pred ccceeEEEc----------------CCC------------------------------------CceEEEEcCCCeEEEE
Confidence 222222222 111 44777887 5599998
Q ss_pred eccccccccceeeeeecCCC-------cceeeeeeecCCceeEEEEEeecCcEEEeecCCcccc--c--cccccceeece
Q 001287 795 SRKSVIQGNNKTVQKVKHKN-------RCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELV--M--ESSLMSILRWN 863 (1107)
Q Consensus 795 sl~~~~~g~~~~i~k~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~--~--~~~~~~~~~~~ 863 (1107)
++..+ +++...-.+ .||.+ +++-|.-|+-.||.+..|+.-+=.+. + ......-+.+|
T Consensus 421 n~qGQ------vVrsfsSGkREgGdFi~~~lS------pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH 488 (508)
T KOG0275|consen 421 NMQGQ------VVRSFSSGKREGGDFINAILS------PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH 488 (508)
T ss_pred eccce------EEeeeccCCccCCceEEEEec------CCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC
Confidence 87763 232222111 12222 68999999999999999988764322 2 22234456688
Q ss_pred ecCccccccccc-CCcE
Q 001287 864 FKANMDKTISAD-NGQI 879 (1107)
Q Consensus 864 ~~~~~~~~~~~s-~Gq~ 879 (1107)
||.|-+.+ +| ||-+
T Consensus 489 PHqNllAs--YsEDgll 503 (508)
T KOG0275|consen 489 PHQNLLAS--YSEDGLL 503 (508)
T ss_pred cccchhhh--hcccchh
Confidence 88887654 66 7743
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=2.8e-25 Score=227.77 Aligned_cols=190 Identities=15% Similarity=0.262 Sum_probs=158.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
.+|-|+.|+ ...+++|..|.+|+|||....+++ .+.+|++.|-||+|.. +.++|+|+|.+|+|||+++++.+..+
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHH
Confidence 458899997 466889999999999999776655 7889999999999975 48999999999999999999999877
Q ss_pred -ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 115 -~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
.|...|..+.|+ ..+|++++.|.++.||+++..+.. . ....+.+|. .+|..|.| +.+++
T Consensus 274 ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i-t-~rrVLvGHr------------AaVNvVdf----d~kyI 333 (499)
T KOG0281|consen 274 IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI-T-LRRVLVGHR------------AAVNVVDF----DDKYI 333 (499)
T ss_pred hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH-H-HHHHHhhhh------------hheeeecc----ccceE
Confidence 677889999885 679999999999999999864311 1 012245555 88999999 56689
Q ss_pred EEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC
Q 001287 194 LIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG 272 (1107)
++++.|.+|++|+..+...+. +.|| ...|.|+-+ .|+++++|++|.
T Consensus 334 VsASgDRTikvW~~st~efvRtl~gH------------------------------kRGIAClQY---r~rlvVSGSSDn 380 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFVRTLNGH------------------------------KRGIACLQY---RDRLVVSGSSDN 380 (499)
T ss_pred EEecCCceEEEEeccceeeehhhhcc------------------------------cccceehhc---cCeEEEecCCCc
Confidence 999999999999999998765 4455 677888874 589999999999
Q ss_pred cEEEEeCCCC
Q 001287 273 DILLWNTSTT 282 (1107)
Q Consensus 273 ~I~lWd~~~~ 282 (1107)
+|++||+..+
T Consensus 381 tIRlwdi~~G 390 (499)
T KOG0281|consen 381 TIRLWDIECG 390 (499)
T ss_pred eEEEEecccc
Confidence 9999999755
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=5.9e-25 Score=236.02 Aligned_cols=295 Identities=13% Similarity=0.192 Sum_probs=230.4
Q ss_pred CCcceeeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEcCC-Ceeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcE
Q 001287 65 DGIEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES-RSLACCL-KWESNITAFSVISGSHFMYIGDENGLM 141 (1107)
Q Consensus 65 ~~~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl~s-~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V 141 (1107)
+........+|+..|+++.|.| .+.+|+|++.|+.|+|||+.. +.++.++ .|..+|..++|++++..+++++-|+.+
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 3445567889999999999999 778899999999999999876 6777766 788999999999999999999999999
Q ss_pred EEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccc
Q 001287 142 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDL 221 (1107)
Q Consensus 142 ~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~ 221 (1107)
++||.++ |+..+. +... ..++|+.|||.+ .+.+++|..|+.|+.||++++++++.+++
T Consensus 283 KlwDtET--G~~~~~---f~~~-------------~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~--- 340 (503)
T KOG0282|consen 283 KLWDTET--GQVLSR---FHLD-------------KVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDR--- 340 (503)
T ss_pred eeecccc--ceEEEE---EecC-------------CCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHh---
Confidence 9999775 666642 3322 568999999974 57799999999999999999998765543
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeec
Q 001287 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLEL 301 (1107)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~ 301 (1107)
+-+.|..+.|+ ++|+.+++.+.|+++++|+....-...
T Consensus 341 --------------------------hLg~i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik--------------- 378 (503)
T KOG0282|consen 341 --------------------------HLGAILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIK--------------- 378 (503)
T ss_pred --------------------------hhhheeeeEEc-cCCceEeeeccCccEEEEEcCCCccch---------------
Confidence 15678899988 999999999999999999986431000
Q ss_pred ccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCC
Q 001287 302 SSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1107)
Q Consensus 302 ~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~ 381 (1107)
.+ +.
T Consensus 379 ----------~i--------------------------------~~---------------------------------- 382 (503)
T KOG0282|consen 379 ----------NI--------------------------------AD---------------------------------- 382 (503)
T ss_pred ----------hh--------------------------------cc----------------------------------
Confidence 00 00
Q ss_pred CCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhh
Q 001287 382 ATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATF 461 (1107)
Q Consensus 382 ~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~ 461 (1107)
-.
T Consensus 383 ----------------~~-------------------------------------------------------------- 384 (503)
T KOG0282|consen 383 ----------------PE-------------------------------------------------------------- 384 (503)
T ss_pred ----------------hh--------------------------------------------------------------
Confidence 00
Q ss_pred ccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCC--e
Q 001287 462 TKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP--V 539 (1107)
Q Consensus 462 ~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~--V 539 (1107)
.....++..+|++.+++.-+.|..|-++.+...... +. . ..+.+|..+ -
T Consensus 385 ---------------------~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-----nk--k-K~feGh~vaGys 435 (503)
T KOG0282|consen 385 ---------------------MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL-----NK--K-KRFEGHSVAGYS 435 (503)
T ss_pred ---------------------hccCcceecCCCCCeehhhccCceEEEEeccccccc-----CH--h-hhhcceeccCce
Confidence 001123366778888888888999988875433211 10 0 235566543 4
Q ss_pred EEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCC-CCEE
Q 001287 540 STLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKL 618 (1107)
Q Consensus 540 t~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~-~~~l 618 (1107)
..+.|||||++|++|+.||.|.+|+|.+. ..+..+..|.++++.+.|+|- ...+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-------------------------kl~~~lkah~~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTT-------------------------KLVSKLKAHDQPCIGVDWHPVEPSKV 490 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhh-------------------------hhhhccccCCcceEEEEecCCCccee
Confidence 56899999999999999999999999986 245677899999999999995 4679
Q ss_pred EEEeCCCeEEEEE
Q 001287 619 AVGFECGRVAVLD 631 (1107)
Q Consensus 619 a~Gs~dg~V~iwd 631 (1107)
|+++.||.|++||
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999996
No 58
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=8.2e-23 Score=226.78 Aligned_cols=496 Identities=13% Similarity=0.142 Sum_probs=295.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC--CCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001287 34 IPATASILAFDHIQRLLAIATL--DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~--dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
|+..++|+||+|.++||++-+. |-.|.+|+.......--..-...|+.++|+.|+.|.++++ ..+|++|.++.++..
T Consensus 121 HKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~Ky 199 (1080)
T KOG1408|consen 121 HKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKY 199 (1080)
T ss_pred ccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccc
Confidence 7889999999999999986443 3456777653332222222345799999999999999987 788999999876511
Q ss_pred e-eeccC---------------------C---------------------------------CeEEEEEecCCCEEEEEc
Q 001287 112 C-CLKWE---------------------S---------------------------------NITAFSVISGSHFMYIGD 136 (1107)
Q Consensus 112 ~-~~~~~---------------------~---------------------------------~Vt~l~~~~~~~~l~~g~ 136 (1107)
. .+... + .-.|+++ ..+++++|+
T Consensus 200 kdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgC 277 (1080)
T KOG1408|consen 200 KDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACGC 277 (1080)
T ss_pred cCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEEee
Confidence 0 00000 0 1123333 467999999
Q ss_pred CCCcEEEEEeecCC--Cceeecceeecccc--c-c-cc--cCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc
Q 001287 137 ENGLMSVIKYDADE--GKLFQLPYNISADA--L-S-EK--AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1107)
Q Consensus 137 ~dg~V~vw~~d~~~--~~l~~~~~~i~~~~--~-~-~~--~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~ 208 (1107)
.+|.|++++-.+.. +++... ..+..+. . + +. .+.....-....++.|.|. ...|.+.|.|..+.|||++
T Consensus 278 a~g~vrlFnp~tL~y~~Tlpr~-halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet--~~klscVYndhSlYvWDvr 354 (1080)
T KOG1408|consen 278 AKGMVRLFNPETLDYAGTLPRS-HALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET--TDKLSCVYNDHSLYVWDVR 354 (1080)
T ss_pred ccceeeecCcchhhhccccccc-cccccchhhcccccccccccCcccCCceeEEEecCC--CceEEEEEcCceEEEEecc
Confidence 99999998855421 122110 0010000 0 0 00 0111112233567788774 5569999999999999997
Q ss_pred CC----EEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCC
Q 001287 209 EA----QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 284 (1107)
Q Consensus 209 ~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~ 284 (1107)
.- ++....-|..-.+.-+.. ..+-..-++.| . |.+ .+++++.||+|++|++.....
T Consensus 355 D~~kvgk~~s~lyHS~ciW~Ve~~-----------------p~nv~~~~~ac-l-p~~-cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 355 DVNKVGKCSSMLYHSACIWDVENL-----------------PCNVHSPTAAC-L-PRG-CFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred ccccccceeeeeeccceeeeeccc-----------------cccccCccccc-C-Ccc-ceeEecCCCcEEEeecccccc
Confidence 63 333333332222210000 00022233455 3 544 489999999999999976321
Q ss_pred CCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeee
Q 001287 285 TKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVD 364 (1107)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~ 364 (1107)
+.+.+-+..... ...|. . .|+.. +++.........+ ...-.
T Consensus 415 ---------n~vyrRNils~~-l~ki~-----------y-~d~~~--------------q~~~d~~~~~fdk---a~~s~ 455 (1080)
T KOG1408|consen 415 ---------NQVYRRNILSAN-LSKIP-----------Y-EDSTQ--------------QIMHDASAGIFDK---ALVST 455 (1080)
T ss_pred ---------cceeecccchhh-hhcCc-----------c-ccCch--------------hhhhhccCCcccc---cchhh
Confidence 112111111110 00000 0 00000 0110000000000 00011
Q ss_pred ecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEe
Q 001287 365 ITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFML 444 (1107)
Q Consensus 365 l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~ 444 (1107)
+.....+..++.+|+.. .++..-..|.+.+|+..++......+ .|++.|.|..|..
T Consensus 456 ~d~r~G~R~~~vSp~gq--------hLAsGDr~GnlrVy~Lq~l~~~~~~e----------------AHesEilcLeyS~ 511 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQ--------HLASGDRGGNLRVYDLQELEYTCFME----------------AHESEILCLEYSF 511 (1080)
T ss_pred cCcccceEEEEECCCcc--------eecccCccCceEEEEehhhhhhhhee----------------cccceeEEEeecC
Confidence 12223567777888754 45555666899999976655444333 3888888888753
Q ss_pred ccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeec
Q 001287 445 LPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALD 524 (1107)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~ 524 (1107)
|..+ .++||+|+.|+.|.|+|+......
T Consensus 512 --------------------------------p~~~--------------~kLLASasrdRlIHV~Dv~rny~l------ 539 (1080)
T KOG1408|consen 512 --------------------------------PVLT--------------NKLLASASRDRLIHVYDVKRNYDL------ 539 (1080)
T ss_pred --------------------------------chhh--------------hHhhhhccCCceEEEEecccccch------
Confidence 1111 138999999999999998755422
Q ss_pred cceeeeeecCCCCCeEEEEEEeCC--CeEEEeccCceEEEEEecCCCCCccceeec--cC--c-----------------
Q 001287 525 AEVQGIEVAGSRAPVSTLSFCFIN--SSLAVGNEFGLVYIYNLNGSLDAKNFLFVL--ET--K----------------- 581 (1107)
Q Consensus 525 ~~~~~~~l~~h~~~Vt~l~fspd~--~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~--~~--~----------------- 581 (1107)
...+.+|...||++.|.-.| ..+++.+.|..+.+-... ....++. |+. .+ +
T Consensus 540 ----~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~q-k~~~g~~-f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 540 ----VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ-KASSGRL-FPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred ----hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhc-cccCcee-ccccccccccceEEEeeeCCCcceEEE
Confidence 03588999999999999877 567778888665432222 1111111 110 00 0
Q ss_pred ----C--cceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEE
Q 001287 582 ----S--EVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMT 655 (1107)
Q Consensus 582 ----~--~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 655 (1107)
+ .+.++..++-.+.+.-...|.+..--+...|.|-|||+...|.++.++|.-+++++ ..+.||+..|+.+.
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv---A~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV---AQMTGHSEAVTGVK 690 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh---hhhcCcchheeeee
Confidence 0 13333333322223333447788889999999999999999999999999999998 56689999999999
Q ss_pred EeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 656 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 656 fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
|.+.+-+ |++.+.||.|+||-...
T Consensus 691 F~nDCkH----------------------lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 691 FLNDCKH----------------------LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ecccchh----------------------heeecCCceEEEEECch
Confidence 9977665 99999999999999764
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=4.7e-24 Score=210.25 Aligned_cols=203 Identities=18% Similarity=0.228 Sum_probs=171.1
Q ss_pred eecCCCCCeEEEEEc---CCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc
Q 001287 30 VHYGIPATASILAFD---HIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 30 ~~~G~~~~i~~lafs---p~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl 105 (1107)
.-+||...|..++|+ |+|-+|++++.||.=-+-+.++...+ ...+|.+.|.......|..+-+|++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 457999999999998 57889999999998888777666555 67789999999999999889999999999999999
Q ss_pred CCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 106 ~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
-++..++++.|...|.+++|+.+.++|++|+.+..++|++++..+.. |-.+.+|. +.|..+.|.
T Consensus 89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap----p~E~~ght------------g~Ir~v~wc 152 (334)
T KOG0278|consen 89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP----PKEISGHT------------GGIRTVLWC 152 (334)
T ss_pred hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC----chhhcCCC------------CcceeEEEe
Confidence 99999999999999999999999999999999999999998753322 23355665 889999995
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
. ..+.++++..|++||+||..++..++.... ...|+++-. +++|++|
T Consensus 153 ~--eD~~iLSSadd~tVRLWD~rTgt~v~sL~~------------------------------~s~VtSlEv-s~dG~il 199 (334)
T KOG0278|consen 153 H--EDKCILSSADDKTVRLWDHRTGTEVQSLEF------------------------------NSPVTSLEV-SQDGRIL 199 (334)
T ss_pred c--cCceEEeeccCCceEEEEeccCcEEEEEec------------------------------CCCCcceee-ccCCCEE
Confidence 4 555699999999999999999988766544 567888885 5999876
Q ss_pred EEEEcCCcEEEEeCCCC
Q 001287 266 AVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~~ 282 (1107)
.++ ..+.|.+||..+.
T Consensus 200 Tia-~gssV~Fwdaksf 215 (334)
T KOG0278|consen 200 TIA-YGSSVKFWDAKSF 215 (334)
T ss_pred EEe-cCceeEEeccccc
Confidence 655 4577999998643
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=1.2e-24 Score=223.07 Aligned_cols=276 Identities=13% Similarity=0.240 Sum_probs=212.9
Q ss_pred CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE
Q 001287 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1107)
Q Consensus 118 ~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~ 197 (1107)
..|.|+.+ +...+++|..|.+|+|||.... .+. +.+.+|. +.|.|+.| +...+++|+
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~--~c~---~~L~GHt------------GSVLCLqy----d~rviisGS 254 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL--ECL---KILTGHT------------GSVLCLQY----DERVIVSGS 254 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccH--HHH---HhhhcCC------------CcEEeeec----cceEEEecC
Confidence 46888877 5678999999999999997642 222 4577887 99999999 455799999
Q ss_pred CCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEE
Q 001287 198 ENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 276 (1107)
Q Consensus 198 ~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~l 276 (1107)
+|.+|+|||+.+++++. +++| ...|..+.|. ..++++++.|.+|++
T Consensus 255 SDsTvrvWDv~tge~l~tlihH------------------------------ceaVLhlrf~---ng~mvtcSkDrsiaV 301 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHH------------------------------CEAVLHLRFS---NGYMVTCSKDRSIAV 301 (499)
T ss_pred CCceEEEEeccCCchhhHHhhh------------------------------cceeEEEEEe---CCEEEEecCCceeEE
Confidence 99999999999998865 4555 5667778853 468999999999999
Q ss_pred EeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccc
Q 001287 277 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 356 (1107)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~ 356 (1107)
||+....... +. .+..
T Consensus 302 Wdm~sps~it---------~r-----------rVLv-------------------------------------------- 317 (499)
T KOG0281|consen 302 WDMASPTDIT---------LR-----------RVLV-------------------------------------------- 317 (499)
T ss_pred EeccCchHHH---------HH-----------HHHh--------------------------------------------
Confidence 9996431000 00 0000
Q ss_pred cceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCc
Q 001287 357 LRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPI 436 (1107)
Q Consensus 357 ~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1107)
|
T Consensus 318 -----------------------------------------G-------------------------------------- 318 (499)
T KOG0281|consen 318 -----------------------------------------G-------------------------------------- 318 (499)
T ss_pred -----------------------------------------h--------------------------------------
Confidence 0
Q ss_pred eeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCc
Q 001287 437 MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV 516 (1107)
Q Consensus 437 it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~ 516 (1107)
|-..++. +.-+.++|++++.|.+||+|+.++..
T Consensus 319 ---------------------------------------------HrAaVNv--Vdfd~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 319 ---------------------------------------------HRAAVNV--VDFDDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred ---------------------------------------------hhhheee--eccccceEEEecCCceEEEEecccee
Confidence 0000011 11233489999999999999999988
Q ss_pred eeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeE
Q 001287 517 FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCR 596 (1107)
Q Consensus 517 l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 596 (1107)
+. ..+.+|...|-|+.+ .++++++|+.|.+|++|++..+ .|+
T Consensus 352 fv-----------Rtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-------------------------~cL 393 (499)
T KOG0281|consen 352 FV-----------RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-------------------------ACL 393 (499)
T ss_pred ee-----------hhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-------------------------HHH
Confidence 76 558899999999988 5899999999999999999886 367
Q ss_pred EEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE------EEEeecCCCCCCceEEEEEeecccCccccCCCC
Q 001287 597 AVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV------LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPN 670 (1107)
Q Consensus 597 ~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~------~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~ 670 (1107)
..+.+|..-|.|+.|. .+.+++|.-||.|+|||+..+.- -+....+..|++.|..|+|.
T Consensus 394 RvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------- 458 (499)
T KOG0281|consen 394 RVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------- 458 (499)
T ss_pred HHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-------------
Confidence 7889999999999995 56799999999999999965421 11123456799999999999
Q ss_pred CCCCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 671 HSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 671 ~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
...+++.+.|.+|.|||-.+|-
T Consensus 459 -----------~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 459 -----------EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred -----------ceEEEeccCCCeEEEEEcCCCC
Confidence 5679999999999999976543
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=220.86 Aligned_cols=289 Identities=15% Similarity=0.200 Sum_probs=222.2
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|..+|.-+.|+++|+|||+++.|.+.-||....+.. .....++.+|. .+|..+.|+| +..+|+
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~------------~~V~yi~wSP--DdryLl 285 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHS------------QPVSYIMWSP--DDRYLL 285 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeeccc------------CceEEEEECC--CCCeEE
Confidence 6788999999999999999999999999999876543 22235567776 8999999999 455677
Q ss_pred EEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcE
Q 001287 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I 274 (1107)
+++.+..+.+||+.++.....+.+. ....++|++|. |||..+++|+.|+.|
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~----------------------------~~~S~~sc~W~-pDg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSG----------------------------LGFSVSSCAWC-PDGFRFVTGSPDRTI 336 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccC----------------------------cCCCcceeEEc-cCCceeEecCCCCcE
Confidence 7777888999999999887766551 04568999997 999999999999999
Q ss_pred EEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccc
Q 001287 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1107)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1107)
..||..... . ..|.+.. .
T Consensus 337 ~~wdlDgn~-------------~---------------~~W~gvr---~------------------------------- 354 (519)
T KOG0293|consen 337 IMWDLDGNI-------------L---------------GNWEGVR---D------------------------------- 354 (519)
T ss_pred EEecCCcch-------------h---------------hcccccc---c-------------------------------
Confidence 999996431 0 0111110 0
Q ss_pred cccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCC
Q 001287 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1107)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1107)
..+
T Consensus 355 --------------~~v--------------------------------------------------------------- 357 (519)
T KOG0293|consen 355 --------------PKV--------------------------------------------------------------- 357 (519)
T ss_pred --------------cee---------------------------------------------------------------
Confidence 001
Q ss_pred CceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001287 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1107)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~ 514 (1107)
..+++++||+.+++-..|..|++++..+
T Consensus 358 ----------------------------------------------------~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 358 ----------------------------------------------------HDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred ----------------------------------------------------EEEEEcCCCcEEEEEecccceeeechhh
Confidence 1125667777788888999999999876
Q ss_pred CceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcce
Q 001287 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1107)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 594 (1107)
...+. +-....+|+++..|.|+++.++--.+..+.+||+... .
T Consensus 386 ~~dr~------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-------------------------~ 428 (519)
T KOG0293|consen 386 RVDRG------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-------------------------K 428 (519)
T ss_pred hhhhc------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-------------------------h
Confidence 66441 1122348999999999999999999999999999854 2
Q ss_pred eEEEEeecCcC--EEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCC
Q 001287 595 CRAVFSLVNSP--VRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNH 671 (1107)
Q Consensus 595 ~~~~~~~h~~~--Vt~la~sp-~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~ 671 (1107)
.+..+.+|... |-.-+|-- +..++|+|++|+.|+||+..++.++ ..++||...|.+++|.|..
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll---~~LsGHs~~vNcVswNP~~----------- 494 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL---AVLSGHSKTVNCVSWNPAD----------- 494 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee---EeecCCcceeeEEecCCCC-----------
Confidence 34455666544 33334443 5589999999999999999999988 6889999999999999542
Q ss_pred CCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 672 SEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 672 ~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
...+++++.||+|++|-..
T Consensus 495 ----------p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 495 ----------PEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ----------HHHhhccCCCCeEEEecCC
Confidence 3469999999999999864
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1e-22 Score=219.39 Aligned_cols=282 Identities=18% Similarity=0.285 Sum_probs=217.2
Q ss_pred CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCce
Q 001287 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l 153 (1107)
...+|++|+|+|...+=+.+...-.+.+++..+......+ .+...|.++.|-.+|++++.|++.|.|+|+++.. ...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHH
Confidence 4568999999997666566666778999999999887755 6888999999999999999999999999999543 223
Q ss_pred eecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE-EEeCCccccccccccCCCC
Q 001287 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPS 232 (1107)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~~~~~~~~~~ 232 (1107)
... +.+|. .+|..+.|+|. +++.+++|+.|+.+++||+++..+. .+.+|
T Consensus 103 LR~---~~ah~------------apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h-------------- 152 (487)
T KOG0310|consen 103 LRQ---LYAHQ------------APVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAELSGH-------------- 152 (487)
T ss_pred HHH---Hhhcc------------CceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEEecCC--------------
Confidence 322 56666 88999999997 5667889999999999999998864 46667
Q ss_pred CCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEE
Q 001287 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1107)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 312 (1107)
+.-|.|..|.+.++..+++|+.||.|++||+.... .++
T Consensus 153 ----------------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------------------------~~v-- 190 (487)
T KOG0310|consen 153 ----------------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------------------------SRV-- 190 (487)
T ss_pred ----------------cceeEeeccccCCCeEEEecCCCceEEEEEeccCC------------------------cee--
Confidence 67788999886677799999999999999996431 000
Q ss_pred EEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEE
Q 001287 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1107)
Q Consensus 313 ~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~ 392 (1107)
+.+....++.++++.|.
T Consensus 191 --------------------------------------------------~elnhg~pVe~vl~lps------------- 207 (487)
T KOG0310|consen 191 --------------------------------------------------VELNHGCPVESVLALPS------------- 207 (487)
T ss_pred --------------------------------------------------EEecCCCceeeEEEcCC-------------
Confidence 12222223333333333
Q ss_pred EEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccC
Q 001287 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1107)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1107)
T Consensus 208 -------------------------------------------------------------------------------- 207 (487)
T KOG0310|consen 208 -------------------------------------------------------------------------------- 207 (487)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEE
Q 001287 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1107)
Q Consensus 473 ~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~La 552 (1107)
|.+||+++. ..||+||+.++.... .....|...||||.+..++..|+
T Consensus 208 ----------------------gs~iasAgG-n~vkVWDl~~G~qll----------~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 208 ----------------------GSLIASAGG-NSVKVWDLTTGGQLL----------TSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred ----------------------CCEEEEcCC-CeEEEEEecCCceeh----------hhhhcccceEEEEEeecCCceEe
Confidence 336776654 479999999665220 23456889999999999999999
Q ss_pred EeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001287 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 553 sg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~ 632 (1107)
+|+-||.|++|++... +.+..+ ..+++|.+++.+|+++.+++|-.||.+.+-+.
T Consensus 255 S~sLD~~VKVfd~t~~-------------------------Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNY-------------------------KVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ecccccceEEEEccce-------------------------EEEEee-ecccceeeEEecCCCceEEEecccceeeeehh
Confidence 9999999999996653 223322 46899999999999999999999998777633
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=2.2e-22 Score=210.05 Aligned_cols=313 Identities=19% Similarity=0.274 Sum_probs=225.6
Q ss_pred CeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc-
Q 001287 108 RSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP- 186 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P- 186 (1107)
.+++..+.|+.-|.++... ++++++|+-||.++||+.. |+.... +.+|. ++|.+++|.-
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~---Gk~~~~---~~Ght------------~~ik~v~~v~~ 155 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK---GKSIKT---IVGHT------------GPIKSVAWVIK 155 (423)
T ss_pred CCccccccchhhhhhhccc--CceEEEeecCCeeEEEecC---CceEEE---EecCC------------cceeeeEEEec
Confidence 3455666677777777665 8899999999999999987 566533 77877 8888777753
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCEEE-----EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQII-----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1107)
.....++++++.|.++++|-++.+... ...|| ...|.++.- .++
T Consensus 156 n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH------------------------------k~~V~sVsv-~~s 204 (423)
T KOG0313|consen 156 NSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH------------------------------KRSVDSVSV-DSS 204 (423)
T ss_pred CCccceEEEecCCceEEEEEecCchhhhhHHhHhccc------------------------------ccceeEEEe-cCC
Confidence 223346999999999999998877542 23356 788999994 599
Q ss_pred CCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecc--cccCccceEEEEeecccccCCCCCceEEEEeCCCCCC
Q 001287 262 GSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELS--SAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGS 339 (1107)
Q Consensus 262 g~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~ 339 (1107)
|..+++|+.|..|.+|+..+..... ....+.. -.+.... ....+.|+
T Consensus 205 gtr~~SgS~D~~lkiWs~~~~~~~~-~E~~s~~-rrk~~~~~~~~~~r~P~----------------------------- 253 (423)
T KOG0313|consen 205 GTRFCSGSWDTMLKIWSVETDEEDE-LESSSNR-RRKKQKREKEGGTRTPL----------------------------- 253 (423)
T ss_pred CCeEEeecccceeeecccCCCcccc-ccccchh-hhhhhhhhhcccccCce-----------------------------
Confidence 9999999999999999943221100 0000000 0000000 00000000
Q ss_pred cceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCC
Q 001287 340 EEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKP 419 (1107)
Q Consensus 340 ~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~ 419 (1107)
T Consensus 254 -------------------------------------------------------------------------------- 253 (423)
T KOG0313|consen 254 -------------------------------------------------------------------------------- 253 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEE
Q 001287 420 SVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYL 499 (1107)
Q Consensus 420 ~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~la 499 (1107)
-..+||...++.+.+++ ...+.
T Consensus 254 ---------------------------------------------------------vtl~GHt~~Vs~V~w~d-~~v~y 275 (423)
T KOG0313|consen 254 ---------------------------------------------------------VTLEGHTEPVSSVVWSD-ATVIY 275 (423)
T ss_pred ---------------------------------------------------------EEecccccceeeEEEcC-CCceE
Confidence 02234444444444444 55899
Q ss_pred EEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeecc
Q 001287 500 AGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 579 (1107)
Q Consensus 500 Tgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~ 579 (1107)
+++.|-+|+.||+..+.+.. .+ --..++.|++++|...+|++|+.|..+++||.+...
T Consensus 276 S~SwDHTIk~WDletg~~~~-----------~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---------- 333 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKS-----------TL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---------- 333 (423)
T ss_pred eecccceEEEEEeeccccee-----------ee-ecCcceeEeecccccceeeecCCCCceeecCCCCCC----------
Confidence 99999999999999888651 11 123479999999999999999999999999988753
Q ss_pred CcCcceecccCCcceeEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCe-EEEEeecCCCCCCceEEEEEe
Q 001287 580 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLS-VLFFTDDISGSSSPIISMTWT 657 (1107)
Q Consensus 580 ~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~-~~la~Gs~dg~V~iwd~~~~~-~~~~~~~~~~h~~~V~~l~fs 657 (1107)
|......|.+|+.-|.++.|+|.. .+|++|+.|+++++||+++.. .+| .+.+|...|.++.|.
T Consensus 334 ------------gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply---dI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 334 ------------GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY---DIAGHNDKVLSVDWN 398 (423)
T ss_pred ------------CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce---eeccCCceEEEEecc
Confidence 223567789999999999999965 678999999999999999887 665 345699999999999
Q ss_pred ecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 658 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 658 ~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
. +.++++|+.|.+|++....
T Consensus 399 ~-----------------------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 E-----------------------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred C-----------------------CceEEeccCcceEEEeccc
Confidence 2 5579999999999998754
No 64
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=9.7e-21 Score=203.79 Aligned_cols=414 Identities=15% Similarity=0.147 Sum_probs=287.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-----eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-----LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-----~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
.+...+|+|...-|.+-...|.+..|+..+.... +......-|.|++|.+| +.++++.++|.|.||+..+.+..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-gdviTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-GDVITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-CCEEeecCCceEEEEeCCCceEE
Confidence 3567899998776666666799999998665433 44444568999999998 57899999999999999887766
Q ss_pred eee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 112 ~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
... .|++.|.+++...++.+|- |..|..|..|+-+. .++. +..+|... ++|..|+-.. +
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y--~k~r--~~elPe~~------------G~iRtv~e~~---~ 340 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY--RKLR--ETELPEQF------------GPIRTVAEGK---G 340 (626)
T ss_pred eEeeecCCceEEEEEecCccEee-cCccceEEeccccc--cccc--cccCchhc------------CCeeEEecCC---C
Confidence 443 7999999999999887766 99999999998332 2222 23455444 7888888843 3
Q ss_pred CEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001287 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1107)
. +++|.+...|.-=+++.+-.+...+| ..+...++-+ |+...+++++.
T Consensus 341 d-i~vGTtrN~iL~Gt~~~~f~~~v~gh------------------------------~delwgla~h-ps~~q~~T~gq 388 (626)
T KOG2106|consen 341 D-ILVGTTRNFILQGTLENGFTLTVQGH------------------------------GDELWGLATH-PSKNQLLTCGQ 388 (626)
T ss_pred c-EEEeeccceEEEeeecCCceEEEEec------------------------------ccceeeEEcC-CChhheeeccC
Confidence 3 89999999987778888888888888 3345556644 88889999999
Q ss_pred CCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCc
Q 001287 271 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 350 (1107)
Q Consensus 271 dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~ 350 (1107)
|+.+++|+-. . +. |..- ...
T Consensus 389 dk~v~lW~~~-k-------------~~--wt~~--~~d------------------------------------------ 408 (626)
T KOG2106|consen 389 DKHVRLWNDH-K-------------LE--WTKI--IED------------------------------------------ 408 (626)
T ss_pred cceEEEccCC-c-------------ee--EEEE--ecC------------------------------------------
Confidence 9999999921 0 00 1000 000
Q ss_pred cccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCccc
Q 001287 351 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 430 (1107)
Q Consensus 351 ~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1107)
++....+.|. ..+++.+..|...+.|......
T Consensus 409 -------------------~~~~~~fhps---------g~va~Gt~~G~w~V~d~e~~~l-------------------- 440 (626)
T KOG2106|consen 409 -------------------PAECADFHPS---------GVVAVGTATGRWFVLDTETQDL-------------------- 440 (626)
T ss_pred -------------------ceeEeeccCc---------ceEEEeeccceEEEEeccccee--------------------
Confidence 1111112222 1344445556666655221000
Q ss_pred ccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEE
Q 001287 431 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIW 510 (1107)
Q Consensus 431 ~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriW 510 (1107)
+.. .+. .+++++++++|+|.+||.|+.|+.|.||
T Consensus 441 ------------v~~--------------------------------~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 441 ------------VTI--------------------------------HTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred ------------EEE--------------------------------Eec--CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 000 111 3456777999999999999999999999
Q ss_pred eCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccC
Q 001287 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1107)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1107)
.++........ --..|..+|+.|+||+|+++|.+-+.|-.+..|.-.....-.+ +.++...
T Consensus 475 ~Vs~~g~~y~r---------~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts----------~kDvkW~ 535 (626)
T KOG2106|consen 475 RVSANGRKYSR---------VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS----------VKDVKWA 535 (626)
T ss_pred EECCCCcEEEE---------eeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce----------ecceeee
Confidence 98866533111 0123337999999999999999999999999994332211100 1111111
Q ss_pred CcceeEEEE----eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCcccc
Q 001287 591 KISLCRAVF----SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLA 666 (1107)
Q Consensus 591 ~g~~~~~~~----~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~ 666 (1107)
. +.|..-| ..+...|.+++-+...+++|+|.+.|.|++|...--+..-..+.+.+|++.|++++|.-.
T Consensus 536 t-~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~------- 607 (626)
T KOG2106|consen 536 T-YTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK------- 607 (626)
T ss_pred e-eEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeC-------
Confidence 0 1122211 346778889999999999999999999999998665554445677899999999999943
Q ss_pred CCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 667 KNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 667 ~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
...|++.+.|.+|..|+.
T Consensus 608 ---------------d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 608 ---------------DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ---------------CceEEecCCCceEEEEEe
Confidence 445777779999999985
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=212.31 Aligned_cols=206 Identities=13% Similarity=0.152 Sum_probs=169.5
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee---------eeCCCCCCEEEEEEEeCCCEEEEEeCCCc
Q 001287 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---------LISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~---------~~~~h~~~V~~l~fs~d~~~L~S~s~d~~ 99 (1107)
...||-.+.+.|..|+|||++|++|+.||.|.+|+..+..+. ..--+..+|.|+.||.|...|++++.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 345899999999999999999999999999999998554332 11237789999999999999999999999
Q ss_pred EEEEEcCCCeeeeee--ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCC
Q 001287 100 IQVWSLESRSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1107)
Q Consensus 100 I~vWDl~s~~~~~~~--~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1107)
|+||.+++|.++..+ .|...|+|+.|+.++..+++++-|.+++|.-+.. |++.+- +.+|. .
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS--GK~LKE---frGHs------------S 349 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS--GKCLKE---FRGHS------------S 349 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc--chhHHH---hcCcc------------c
Confidence 999999999999887 5888999999999999999999999999988765 666643 66776 7
Q ss_pred CeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEe
Q 001287 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1107)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1107)
.|+...|.+ +|.+++++++||+|+||+.++..+...+.. .+ .+-+|.++.-
T Consensus 350 yvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------------~~--------------~d~~vnsv~~ 400 (508)
T KOG0275|consen 350 YVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKP-------------LG--------------TDYPVNSVIL 400 (508)
T ss_pred cccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccC-------------CC--------------CcccceeEEE
Confidence 899999955 899999999999999999999887655432 00 1456777665
Q ss_pred ecCCCCEEEEEEcCCcEEEEeCC
Q 001287 258 ASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 258 ~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
...+-.+++++-..+++.+-++.
T Consensus 401 ~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 401 LPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred cCCCCceEEEEcCCCeEEEEecc
Confidence 54455677777777777777664
No 66
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=2.8e-22 Score=216.08 Aligned_cols=311 Identities=15% Similarity=0.235 Sum_probs=222.9
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.+...|+++++.|.|-++++|+-|-.|++||+...+..+.. |+. . .......|.+++|+| .+.+|+
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~--fr~--l--------~P~E~h~i~sl~ys~--Tg~~iL 230 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS--FRQ--L--------QPCETHQINSLQYSV--TGDQIL 230 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchh--hhc--c--------CcccccccceeeecC--CCCeEE
Confidence 34568999999999999999999999999999854333321 111 0 011125699999988 577899
Q ss_pred EEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcE
Q 001287 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I 274 (1107)
+.+.....+|+|-....+........... ...+...+...++|.||+..+...+++++.||++
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~-----------------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIR-----------------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhhh-----------------hhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 99999999999998877655432211110 0111222367899999984445678999999999
Q ss_pred EEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccc
Q 001287 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1107)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1107)
++|++...... +.|++--
T Consensus 294 RiWdv~~~k~q---------------------------------------------------------~qVik~k----- 311 (641)
T KOG0772|consen 294 RIWDVNNTKSQ---------------------------------------------------------LQVIKTK----- 311 (641)
T ss_pred EEEecCCchhh---------------------------------------------------------eeEEeec-----
Confidence 99999743110 0011100
Q ss_pred cccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCC
Q 001287 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1107)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1107)
T Consensus 312 -------------------------------------------------------------------------------- 311 (641)
T KOG0772|consen 312 -------------------------------------------------------------------------------- 311 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001287 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1107)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~ 514 (1107)
..||.......+++++++.+||+|+.||+|.+|+...
T Consensus 312 -------------------------------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~ 348 (641)
T KOG0772|consen 312 -------------------------------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS 348 (641)
T ss_pred -------------------------------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence 0000001112337889999999999999999999876
Q ss_pred CceeEEEeeccceeeeeecCCCC--CeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCc
Q 001287 515 PVFKLICALDAEVQGIEVAGSRA--PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1107)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~--~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 592 (1107)
...++.+.++ ..|.. .|+||.||+||++|++-+.|++++||+++....
T Consensus 349 ~~v~p~~~vk--------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk---------------------- 398 (641)
T KOG0772|consen 349 RTVRPVMKVK--------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK---------------------- 398 (641)
T ss_pred cccccceEee--------eccCCCCceeEEEeccccchhhhccCCCceeeeecccccc----------------------
Confidence 6655444332 35555 899999999999999999999999999987532
Q ss_pred ceeEEEEeec--CcCEEEEEEcCCCCEEEEEeC------CCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCcc
Q 001287 593 SLCRAVFSLV--NSPVRALQFTSSGAKLAVGFE------CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHS 664 (1107)
Q Consensus 593 ~~~~~~~~~h--~~~Vt~la~sp~~~~la~Gs~------dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~ 664 (1107)
++.++.+. .-+-|.++|||+.++|++|+. .|++.+||..+...++.... ....|..+.|.+
T Consensus 399 --pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aSvv~~~Whp------ 467 (641)
T KOG0772|consen 399 --PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STASVVRCLWHP------ 467 (641)
T ss_pred --chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC---CCceEEEEeecc------
Confidence 34444443 345788999999999999864 57899999999998877665 578899999994
Q ss_pred ccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEe
Q 001287 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1107)
Q Consensus 665 ~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d 698 (1107)
.-+.+++|+.||.+.|+=
T Consensus 468 ----------------kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 468 ----------------KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ----------------hhhheeeecCCCceEEEE
Confidence 356699999999997763
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=1.1e-21 Score=204.90 Aligned_cols=211 Identities=16% Similarity=0.218 Sum_probs=161.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEe-C--CCEEEEEeCCCcEEEEEcCCCe
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQ-N--QGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~-d--~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
-|+.-|+++... +++|.+|+.||.++||+..+.......+|.++|..+++.- | ...+++++.|.++++|.++.+.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 344556665555 7999999999999999999999999999999999888854 3 2359999999999999998885
Q ss_pred ee-----eeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccc--c---c--ccCC----CC
Q 001287 110 LA-----CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL--S---E--KAGF----PL 173 (1107)
Q Consensus 110 ~~-----~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~--~---~--~~~~----~~ 173 (1107)
.. ...+|...|-++++.+++..+++|+.|.++.||+...+...-.. .+....+ + + .... -.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E---~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELE---SSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccc---ccchhhhhhhhhhhcccccCceEEec
Confidence 43 22379999999999999999999999999999994331110000 0000000 0 0 0001 13
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCcee
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 253 (1107)
+|.++|.+|.|.+ ...+++++-|.+|+.||+.++..+...-. .+.+.
T Consensus 258 GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~------------------------------~ksl~ 304 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT------------------------------NKSLN 304 (423)
T ss_pred ccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec------------------------------Cccee
Confidence 4669999999965 34599999999999999999887654322 67788
Q ss_pred EEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 254 ALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 254 sl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
|+.+. |....|++|+.|..|++||..++
T Consensus 305 ~i~~~-~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 305 CISYS-PLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred Eeecc-cccceeeecCCCCceeecCCCCC
Confidence 99975 89999999999999999999754
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.4e-21 Score=189.74 Aligned_cols=203 Identities=10% Similarity=0.116 Sum_probs=175.3
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-CCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
...-++.+.|.++.|.-+|+|+.+++.|.+|++|+. .+.....-.+|...|..++.+.|...+++++.|..|.+||+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 334567788999999999999999999999999997 4555668889999999999999999999999999999999999
Q ss_pred Ceeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
|+.+..+ .|.+.|+++.|+.....+++|+-|.++++|+.....-+.+|. +.... +.|.+|..
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi---ldea~------------D~V~Si~v-- 153 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI---LDEAK------------DGVSSIDV-- 153 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch---hhhhc------------CceeEEEe--
Confidence 9999888 788999999999999999999999999999988766666653 33222 77888888
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
.+..++.|+.||+++.||++.++... ++ ..+|+|+++ ++||+..
T Consensus 154 --~~heIvaGS~DGtvRtydiR~G~l~sDy~--------------------------------g~pit~vs~-s~d~nc~ 198 (307)
T KOG0316|consen 154 --AEHEIVAGSVDGTVRTYDIRKGTLSSDYF--------------------------------GHPITSVSF-SKDGNCS 198 (307)
T ss_pred --cccEEEeeccCCcEEEEEeecceeehhhc--------------------------------CCcceeEEe-cCCCCEE
Confidence 34459999999999999999987643 33 347999996 5999999
Q ss_pred EEEEcCCcEEEEeCCCCC
Q 001287 266 AVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~~~ 283 (1107)
+.++.|++|++-|-.+++
T Consensus 199 La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 199 LASSLDSTLRLLDKETGK 216 (307)
T ss_pred EEeeccceeeecccchhH
Confidence 999999999999987764
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.8e-21 Score=190.65 Aligned_cols=271 Identities=15% Similarity=0.170 Sum_probs=200.5
Q ss_pred CCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEE
Q 001287 65 DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSV 143 (1107)
Q Consensus 65 ~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~v 143 (1107)
++.+...+..|+++|..+.|..||.|.++++.|.+|++||...+.+++.+ .|..+|..++.+.++..++.|+.|..|.+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 34455567789999999999999999999999999999999999999998 67789999999999999999999999999
Q ss_pred EEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccc
Q 001287 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQL 223 (1107)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~ 223 (1107)
|++.+ |+..+. +.+|. +.|..|.|
T Consensus 86 wDV~T--Gkv~Rr---~rgH~------------aqVNtV~f--------------------------------------- 109 (307)
T KOG0316|consen 86 WDVNT--GKVDRR---FRGHL------------AQVNTVRF--------------------------------------- 109 (307)
T ss_pred EEccc--Ceeeee---ccccc------------ceeeEEEe---------------------------------------
Confidence 99875 555532 55554 45555555
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccc
Q 001287 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1107)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (1107)
. .+...+++|+.|.++++||..+.. ..|+.
T Consensus 110 ----------------------------------N-eesSVv~SgsfD~s~r~wDCRS~s---------~ePiQ------ 139 (307)
T KOG0316|consen 110 ----------------------------------N-EESSVVASGSFDSSVRLWDCRSRS---------FEPIQ------ 139 (307)
T ss_pred ----------------------------------c-CcceEEEeccccceeEEEEcccCC---------CCccc------
Confidence 2 445567777777777777775431 01111
Q ss_pred ccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCC
Q 001287 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1107)
Q Consensus 304 ~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~ 383 (1107)
.+ +...|+ +..
T Consensus 140 --------il--------dea~D~-----------------V~S------------------------------------ 150 (307)
T KOG0316|consen 140 --------IL--------DEAKDG-----------------VSS------------------------------------ 150 (307)
T ss_pred --------hh--------hhhcCc-----------------eeE------------------------------------
Confidence 00 000000 000
Q ss_pred CCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhcc
Q 001287 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1107)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1107)
.+
T Consensus 151 -------------------i~----------------------------------------------------------- 152 (307)
T KOG0316|consen 151 -------------------ID----------------------------------------------------------- 152 (307)
T ss_pred -------------------EE-----------------------------------------------------------
Confidence 00
Q ss_pred ccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEE
Q 001287 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1107)
Q Consensus 464 ~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~ 543 (1107)
-.+..|++|+.||++|.||+..+.+. . ..-..+|+|+.
T Consensus 153 -----------------------------v~~heIvaGS~DGtvRtydiR~G~l~-----------s--Dy~g~pit~vs 190 (307)
T KOG0316|consen 153 -----------------------------VAEHEIVAGSVDGTVRTYDIRKGTLS-----------S--DYFGHPITSVS 190 (307)
T ss_pred -----------------------------ecccEEEeeccCCcEEEEEeecceee-----------h--hhcCCcceeEE
Confidence 00116899999999999999988855 2 33334999999
Q ss_pred EEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCE--EEEEEcCCCCEEEEE
Q 001287 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV--RALQFTSSGAKLAVG 621 (1107)
Q Consensus 544 fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~V--t~la~sp~~~~la~G 621 (1107)
|++|++.+..++.|+++++.+-.+. .++..+.+|...= ...+++....++++|
T Consensus 191 ~s~d~nc~La~~l~stlrLlDk~tG-------------------------klL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 191 FSKDGNCSLASSLDSTLRLLDKETG-------------------------KLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred ecCCCCEEEEeeccceeeecccchh-------------------------HHHHHhcccccceeeeeeeecccceeEEec
Confidence 9999999999999999999987765 2455667776553 445566777899999
Q ss_pred eCCCeEEEEEcCCCeEEEEeecCCCCCCc-eEEEEEee
Q 001287 622 FECGRVAVLDMNLLSVLFFTDDISGSSSP-IISMTWTE 658 (1107)
Q Consensus 622 s~dg~V~iwd~~~~~~~~~~~~~~~h~~~-V~~l~fs~ 658 (1107)
++||.|++||+....++. .++-+... |++|.|.+
T Consensus 246 SEDG~Vy~wdLvd~~~~s---k~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQIS---KLSVVSTVIVTDLSCHP 280 (307)
T ss_pred cCCceEEEEEeccceeee---eeccCCceeEEeeeccc
Confidence 999999999999998884 34446666 78888873
No 70
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=5.6e-23 Score=212.91 Aligned_cols=202 Identities=12% Similarity=0.140 Sum_probs=161.1
Q ss_pred eeeeecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCcce-eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 001287 27 RIAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 27 ~~~~~~G~~~~i~~lafsp~~-~~LA~Gs~dg~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWD 104 (1107)
=+....||..+|.|||=+|.+ ..+|+|+.||.|+|||+...++ ..+..|.+.|+.|++.. ...+++++|++|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345568999999999999998 8999999999999999976554 47788999999999998 6699999999999999
Q ss_pred cCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 105 LESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 105 l~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
++.. .++++...+.++.+..+..+..+++++++ |.|||...+ ..++. +.+.. +.|.++.|
T Consensus 136 ~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~--~Pv~s---mswG~------------Dti~svkf 195 (433)
T KOG0268|consen 136 IDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD--NPVSS---MSWGA------------DSISSVKF 195 (433)
T ss_pred ccCC-cceeeeccccccccccccccccccccCce--eeecccccC--Cccce---eecCC------------CceeEEec
Confidence 8874 66777677778888888788888888766 678997643 22221 33222 66999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCE
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1107)
+|. +...|+++.+|+.|.|||+..+.++...-. .-.-..+||. |++-.
T Consensus 196 Npv-ETsILas~~sDrsIvLyD~R~~~Pl~KVi~------------------------------~mRTN~Iswn-Peafn 243 (433)
T KOG0268|consen 196 NPV-ETSILASCASDRSIVLYDLRQASPLKKVIL------------------------------TMRTNTICWN-PEAFN 243 (433)
T ss_pred CCC-cchheeeeccCCceEEEecccCCccceeee------------------------------eccccceecC-ccccc
Confidence 998 455588888999999999999876542211 2234569997 89999
Q ss_pred EEEEEcCCcEEEEeCCCC
Q 001287 265 LAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 265 l~sg~~dG~I~lWd~~~~ 282 (1107)
+++|..|..++.+|+...
T Consensus 244 F~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNL 261 (433)
T ss_pred eeeccccccceehhhhhh
Confidence 999999999999998643
No 71
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=8.8e-22 Score=212.25 Aligned_cols=184 Identities=14% Similarity=0.201 Sum_probs=138.4
Q ss_pred CcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe----eeeeec--cCCCeEEEEEecCCCEEEEEcCCC
Q 001287 66 GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS----LACCLK--WESNITAFSVISGSHFMYIGDENG 139 (1107)
Q Consensus 66 ~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~----~~~~~~--~~~~Vt~l~~~~~~~~l~~g~~dg 139 (1107)
...-+.+.+|+..|++|+|.|.|.+++|++-|.+|++||+..-. ....+. ....|.++.|++.+..+++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 33344566788899999999999999999999999999997652 222232 225799999999999999988888
Q ss_pred cEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE-EEEeCC
Q 001287 140 LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGG 218 (1107)
Q Consensus 140 ~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~-~~~~g~ 218 (1107)
..+|+|-|. -.+. -.+.++.+...+.....|...++|.+|||...+ .+++++.||++++||+...+- ..++.+
T Consensus 237 qakl~DRdG--~~~~---e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 237 QAKLLDRDG--FEIV---EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred ceeEEccCC--ceee---eeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCchhheeEEee
Confidence 888888663 2222 224455555555666777799999999998544 499999999999999877532 333333
Q ss_pred ccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
+.... .+-.++++.|. +||..||+|+.||+|.+|+..
T Consensus 311 k~~~g------------------------~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 311 KPAGG------------------------KRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKG 347 (641)
T ss_pred ccCCC------------------------cccCceeeecC-CCcchhhhcccCCceeeeecC
Confidence 11111 15678899996 999999999999999999984
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-20 Score=188.61 Aligned_cols=162 Identities=17% Similarity=0.313 Sum_probs=132.2
Q ss_pred eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
+.+.+|+.|++.+.|..+|.+|+|++.|.++.||-...|+.+..+ .|.+.|.|+.++.+.++|++|+.|.++++|++..
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 467789999999999999999999999999999999999888877 8999999999999999999999999999999875
Q ss_pred CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-----CCeEEEEEccCCEE--------EEE
Q 001287 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-----NALVILWDVSEAQI--------IFV 215 (1107)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-----dg~V~vwdl~~~~~--------~~~ 215 (1107)
|+..-. ++.+ .+|..+.|++ .|++++.... .+.|.++|++.... ..+
T Consensus 84 --Gk~la~-~k~~---------------~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 84 --GKQLAT-WKTN---------------SPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred --CcEEEE-eecC---------------CeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 555422 3333 6799999977 6775444433 34788888874321 111
Q ss_pred eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 216 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
..+ +..++++.|. |-+++|++|..||.|..||+.++
T Consensus 144 ~t~------------------------------~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 144 PTP------------------------------DSKITSALWG-PLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred cCC------------------------------ccceeeeeec-ccCCEEEEecCCCcEEEEEcccC
Confidence 111 6789999996 99999999999999999999865
No 73
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=7.1e-22 Score=208.26 Aligned_cols=281 Identities=17% Similarity=0.242 Sum_probs=212.8
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|.+.+..+.|.++...|++|+.|..|++|+.......+... +.+.. ++|+++.|.+ ++.+++
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t---LaGs~------------g~it~~d~d~--~~~~~i 235 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST---LAGSL------------GNITSIDFDS--DNKHVI 235 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh---hhccC------------CCcceeeecC--CCceEE
Confidence 577899999999999999999999999999987644333322 32222 7799999966 788899
Q ss_pred EEECCCeEEEEEccCCEEE-EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCc
Q 001287 195 IAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~ 273 (1107)
.++.|+.+++|++...+.. ++.|| ...|+++-|. .....+++|+.|.+
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGH------------------------------tdkVt~ak~~-~~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGH------------------------------TDKVTAAKFK-LSHSRVVSGSADRT 284 (459)
T ss_pred eecCCCceeeeeccchhhhhhhccc------------------------------ccceeeehhh-ccccceeeccccch
Confidence 9999999999999998774 46677 7788998865 54555999999999
Q ss_pred EEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcccc
Q 001287 274 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1107)
Q Consensus 274 I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~ 353 (1107)
|++||+........ +..+..
T Consensus 285 iK~WDl~k~~C~kt------------------------------------------~l~~S~------------------ 304 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKT------------------------------------------VLPGSQ------------------ 304 (459)
T ss_pred hhhhhhhhhheecc------------------------------------------cccccc------------------
Confidence 99999964310000 000000
Q ss_pred ccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccC
Q 001287 354 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 433 (1107)
Q Consensus 354 ~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1107)
+ ..+..
T Consensus 305 -----------------c--------------------------nDI~~------------------------------- 310 (459)
T KOG0288|consen 305 -----------------C--------------------------NDIVC------------------------------- 310 (459)
T ss_pred -----------------c--------------------------cceEe-------------------------------
Confidence 0 00000
Q ss_pred CCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCC
Q 001287 434 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 513 (1107)
Q Consensus 434 ~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~ 513 (1107)
....+++||.|++||+||..
T Consensus 311 ------------------------------------------------------------~~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 311 ------------------------------------------------------------SISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred ------------------------------------------------------------cceeeeecccccceEEEecc
Confidence 01268899999999999998
Q ss_pred CCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcc
Q 001287 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1107)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 593 (1107)
...+. ..+..+ +.|++|..++++..|.+.+.|.++.+.++.+..
T Consensus 331 s~~~~-----------~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e------------------------ 374 (459)
T KOG0288|consen 331 SADKT-----------RSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE------------------------ 374 (459)
T ss_pred CCcee-----------eEeecC-cceeeEeeccCCeEEeeecCCCceeeeeccccc------------------------
Confidence 88865 223333 389999999999999999999999999998862
Q ss_pred eeEEEEee----cCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCC
Q 001287 594 LCRAVFSL----VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNP 669 (1107)
Q Consensus 594 ~~~~~~~~----h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p 669 (1107)
....+.. .....+.+.|||++.|+|+|+.||.|+||++.++++...... .+....|+++.|++
T Consensus 375 -I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~~aI~s~~W~~----------- 441 (459)
T KOG0288|consen 375 -IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSNAAITSLSWNP----------- 441 (459)
T ss_pred -EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CCCCcceEEEEEcC-----------
Confidence 2223322 234489999999999999999999999999999998865543 33344799999994
Q ss_pred CCCCCCCCCCCCccEEEEEcCCceEEEE
Q 001287 670 NHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1107)
Q Consensus 670 ~~~~~~~~~~~~~~~L~s~s~Dg~v~v~ 697 (1107)
.+..|++++.+..+++|
T Consensus 442 -----------sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 442 -----------SGSGLLSADKQKAVTLW 458 (459)
T ss_pred -----------CCchhhcccCCcceEec
Confidence 46679999999999998
No 74
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=9.9e-21 Score=202.61 Aligned_cols=289 Identities=17% Similarity=0.232 Sum_probs=213.7
Q ss_pred eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee----ee------e---------ccCCCeEEEEEecCC
Q 001287 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA----CC------L---------KWESNITAFSVISGS 129 (1107)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~----~~------~---------~~~~~Vt~l~~~~~~ 129 (1107)
......|..+|.+++++++..++++++.+++|.=|++.+++.. .. . .|...|.++++++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4567789999999999999999999999999999999988632 11 0 244679999999999
Q ss_pred CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC
Q 001287 130 HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 130 ~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
+||++|..|..|.||+.++. ..+ +.+.+|. +.|.+++|.- ....|++++.|+.|++|++..
T Consensus 215 kylatgg~d~~v~Iw~~~t~--ehv---~~~~ghr------------~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL--EHV---KVFKGHR------------GAVSSLAFRK--GTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cEEEecCCCceEEEecCccc--chh---hcccccc------------cceeeeeeec--CccceeeeecCCceEEEehhH
Confidence 99999999999999998752 333 3367776 8999999944 555699999999999999988
Q ss_pred CEE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCc
Q 001287 210 AQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQ 288 (1107)
Q Consensus 210 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~ 288 (1107)
... ..++|| ...|.++.- ...++.+-+|+.|+++++|++...
T Consensus 276 ~s~vetlyGH------------------------------qd~v~~Ida-L~reR~vtVGgrDrT~rlwKi~ee------ 318 (479)
T KOG0299|consen 276 LSYVETLYGH------------------------------QDGVLGIDA-LSRERCVTVGGRDRTVRLWKIPEE------ 318 (479)
T ss_pred hHHHHHHhCC------------------------------ccceeeech-hcccceEEeccccceeEEEecccc------
Confidence 755 457888 556666663 356677777779999999998422
Q ss_pred cCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCC
Q 001287 289 QTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT 368 (1107)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~ 368 (1107)
.+++..++.
T Consensus 319 --------------------------------------sqlifrg~~--------------------------------- 327 (479)
T KOG0299|consen 319 --------------------------------------SQLIFRGGE--------------------------------- 327 (479)
T ss_pred --------------------------------------ceeeeeCCC---------------------------------
Confidence 111111111
Q ss_pred CccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCC
Q 001287 369 GSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFG 448 (1107)
Q Consensus 369 ~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~ 448 (1107)
..+.|.+++.
T Consensus 328 ------------------------------------------------------------------~sidcv~~In---- 337 (479)
T KOG0299|consen 328 ------------------------------------------------------------------GSIDCVAFIN---- 337 (479)
T ss_pred ------------------------------------------------------------------CCeeeEEEec----
Confidence 1122222221
Q ss_pred CCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeecccee
Q 001287 449 GHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQ 528 (1107)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~ 528 (1107)
..-++||+.||.|.+|++....+..+..+...+.
T Consensus 338 ----------------------------------------------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 338 ----------------------------------------------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred ----------------------------------------------ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 1158999999999999998877554444443332
Q ss_pred ee-eecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEE
Q 001287 529 GI-EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR 607 (1107)
Q Consensus 529 ~~-~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt 607 (1107)
.. ....+...|++|+..|.+.++|+|+.+|.|++|.+..+.... .++..+ ...+-|+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i---------------------~~l~~l-s~~GfVN 429 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI---------------------NLLYSL-SLVGFVN 429 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc---------------------ceeeec-ccccEEE
Confidence 21 123444689999999999999999999999999998873321 122323 2678899
Q ss_pred EEEEcCCCCEEEEEe
Q 001287 608 ALQFTSSGAKLAVGF 622 (1107)
Q Consensus 608 ~la~sp~~~~la~Gs 622 (1107)
+|+|+++|+++++|-
T Consensus 430 sl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEccCCCEEEEec
Confidence 999999999888774
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=2.2e-21 Score=196.80 Aligned_cols=209 Identities=15% Similarity=0.222 Sum_probs=168.7
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-------------------ceeeeCCCCCCEEEEEEEeCCCE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-------------------EGLLISPSQLPYKNLEFLQNQGF 90 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-------------------~~~~~~~h~~~V~~l~fs~d~~~ 90 (1107)
...-|++...|.+|+|||.++|+|+.|..|+|+|.+.. ....+-.|..+|++|.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 34467888899999999999999999999999997621 11245568999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCee---eeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 91 LISITNDNEIQVWSLESRSL---ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 91 L~S~s~d~~I~vWDl~s~~~---~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
|+|++.|++|+++|+..-.. ...++...+|.+++|+|.|.+|++|.....++++++.+.+. +.. ..|
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc-fvs---anP------ 256 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC-FVS---ANP------ 256 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE-eee---cCc------
Confidence 99999999999999976533 33445667999999999999999999999999999875211 110 011
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
...+.+.|++|.+++ .+++.++|+.||.|++||--+++++..++. . .
T Consensus 257 ----d~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--------A-------------------H 303 (430)
T KOG0640|consen 257 ----DDQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGN--------A-------------------H 303 (430)
T ss_pred ----ccccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHh--------h-------------------c
Confidence 123348899999977 688899999999999999888888765532 1 1
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...+|+++.|. .+|++|++.+.|..+++|.+.++
T Consensus 304 ~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 304 GGSEVCSAVFT-KNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred CCceeeeEEEc-cCCeEEeecCCcceeeeeeecCC
Confidence 15679999975 99999999999999999999876
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=7.4e-21 Score=189.91 Aligned_cols=210 Identities=15% Similarity=0.169 Sum_probs=173.6
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
....||...++-+.|..+|.+|.+++.|..+.||=..+.+.+ ..-+|++.|-|+....+..+|++++.|+++++||+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 445689999999999999999999999999999987555544 7789999999999999999999999999999999999
Q ss_pred CeeeeeeccCCCeEEEEEecCCCEEEEEcC-----CCcEEEEEeecCCCc-eeecc-eeecccccccccCCCCCCCCCeE
Q 001287 108 RSLACCLKWESNITAFSVISGSHFMYIGDE-----NGLMSVIKYDADEGK-LFQLP-YNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~-----dg~V~vw~~d~~~~~-l~~~~-~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
|+.+..+.....|..+.|++++++++.... .+.|.++++...... ..+.| ++++.++ ..++
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~------------skit 151 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD------------SKIT 151 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc------------ccee
Confidence 999999999999999999999998887754 356777776532211 11111 3455554 6799
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCEEE-EE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEee
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1107)
.+.|.| .++.|++|..||.|..||++++... .. ..| ...|+.+++
T Consensus 152 ~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h------------------------------~~~Ind~q~- 198 (327)
T KOG0643|consen 152 SALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEH------------------------------SSKINDLQF- 198 (327)
T ss_pred eeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhh------------------------------ccccccccc-
Confidence 999988 5777999999999999999998543 22 222 668999996
Q ss_pred cCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 259 SSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 259 spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
++|..++++++.|.+-++||..+.+
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred cCCcceEEecccCccceeeecccee
Confidence 5999999999999999999998653
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=3.5e-20 Score=184.66 Aligned_cols=265 Identities=15% Similarity=0.239 Sum_probs=199.3
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|...|.+++|+.++..|+.|+.|+++.||+++.. .+.. .....+|. +.|..++|+|. ...+++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~~~-~~~~~gh~------------~svdql~w~~~-~~d~~a 81 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RFRK-ELVYRGHT------------DSVDQLCWDPK-HPDLFA 81 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecch--hhhh-hhcccCCC------------cchhhheeCCC-CCcceE
Confidence 46678999999999999999999999999999864 2221 11223333 78999999998 556699
Q ss_pred EEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcE
Q 001287 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I 274 (1107)
+++.|.+|++||+..+++...... .++-.-++|. |+|.+++++..|..|
T Consensus 82 tas~dk~ir~wd~r~~k~~~~i~~------------------------------~~eni~i~ws-p~g~~~~~~~kdD~i 130 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCTARIET------------------------------KGENINITWS-PDGEYIAVGNKDDRI 130 (313)
T ss_pred EecCCceEEEEEeccCcEEEEeec------------------------------cCcceEEEEc-CCCCEEEEecCcccE
Confidence 999999999999999988655432 2233346774 999999999999999
Q ss_pred EEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccc
Q 001287 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1107)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1107)
.+.|..+.+.... ... ... +
T Consensus 131 t~id~r~~~~~~~-----------~~~-----~~e-----------------------------------~--------- 150 (313)
T KOG1407|consen 131 TFIDARTYKIVNE-----------EQF-----KFE-----------------------------------V--------- 150 (313)
T ss_pred EEEEecccceeeh-----------hcc-----cce-----------------------------------e---------
Confidence 9998864411000 000 000 0
Q ss_pred cccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCC
Q 001287 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1107)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1107)
.++
T Consensus 151 -------------------------------------------ne~---------------------------------- 153 (313)
T KOG1407|consen 151 -------------------------------------------NEI---------------------------------- 153 (313)
T ss_pred -------------------------------------------eee----------------------------------
Confidence 000
Q ss_pred CceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001287 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1107)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~ 514 (1107)
.++.++.+++.-...|+|.|.....
T Consensus 154 -------------------------------------------------------~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 154 -------------------------------------------------------SWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred -------------------------------------------------------eecCCCCEEEEecCCceEEEEeccc
Confidence 1112222444444467777766553
Q ss_pred CceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcce
Q 001287 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1107)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 594 (1107)
-+ ++ .++..|....-||.|+|+|++||+|+.|..|-+||++.- .
T Consensus 179 Lk--pv---------~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-------------------------i 222 (313)
T KOG1407|consen 179 LK--PV---------QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-------------------------I 222 (313)
T ss_pred cc--cc---------cccccCCcceEEEEECCCCceEeeccccceeeccChhHh-------------------------h
Confidence 33 22 346688888999999999999999999999999998875 5
Q ss_pred eEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEee
Q 001287 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 658 (1107)
Q Consensus 595 ~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~ 658 (1107)
|...+..+.-+|..|.||.||++||+|++|-.|-|=+++++..+++.+ +.++-..++|.+
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~~~t~tVAWHP 282 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CEGPTFTVAWHP 282 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----ccCCceeEEecC
Confidence 778889999999999999999999999999999999999999997765 688899999993
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.87 E-value=1.8e-21 Score=192.14 Aligned_cols=286 Identities=18% Similarity=0.217 Sum_probs=218.4
Q ss_pred eeeCCCCCCEEEEEEEe---CCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 001287 70 LLISPSQLPYKNLEFLQ---NQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIK 145 (1107)
Q Consensus 70 ~~~~~h~~~V~~l~fs~---d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~ 145 (1107)
+.-++|..||..|+||| +|-+|+|+|.|+.--+-+-+++.-+.++ .|.+.|...+.+.+.-.-+++..|-+-+||+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 35578999999999985 8899999999999888899999887766 8999999999988888889999998889998
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE--EEEEeCCccccc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQL 223 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~--~~~~~g~~~~~~ 223 (1107)
--+ |..... + .|. .-|.+++|+. +.++|++|+.+..++|||+...+ +..+.+|
T Consensus 88 a~t--gdelhs---f-~hk------------hivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~gh----- 142 (334)
T KOG0278|consen 88 AVT--GDELHS---F-EHK------------HIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH----- 142 (334)
T ss_pred hhh--hhhhhh---h-hhh------------heeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCC-----
Confidence 432 222111 1 122 4489999954 77889999999999999988754 3445566
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccc
Q 001287 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1107)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (1107)
.+.|..+.|. ...+.|++...|++|++||..++.. +..|....
T Consensus 143 -------------------------tg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~-----------v~sL~~~s 185 (334)
T KOG0278|consen 143 -------------------------TGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTE-----------VQSLEFNS 185 (334)
T ss_pred -------------------------CCcceeEEEe-ccCceEEeeccCCceEEEEeccCcE-----------EEEEecCC
Confidence 7789999986 6677888889999999999986621 11010000
Q ss_pred ccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCC
Q 001287 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1107)
Q Consensus 304 ~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~ 383 (1107)
T Consensus 186 -------------------------------------------------------------------------------- 185 (334)
T KOG0278|consen 186 -------------------------------------------------------------------------------- 185 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhcc
Q 001287 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1107)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1107)
T Consensus 186 -------------------------------------------------------------------------------- 185 (334)
T KOG0278|consen 186 -------------------------------------------------------------------------------- 185 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEE
Q 001287 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1107)
Q Consensus 464 ~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~ 543 (1107)
.+..+.+++++++|.++. .++|++||+..-.+...+. -...|.+-.
T Consensus 186 ---------------------~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k------------~P~nV~SAS 231 (334)
T KOG0278|consen 186 ---------------------PVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK------------MPCNVESAS 231 (334)
T ss_pred ---------------------CCcceeeccCCCEEEEec-CceeEEeccccccceeecc------------Ccccccccc
Confidence 001124556665655544 5689999998766442222 224688899
Q ss_pred EEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEE-eecCcCEEEEEEcCCCCEEEEEe
Q 001287 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSSGAKLAVGF 622 (1107)
Q Consensus 544 fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~h~~~Vt~la~sp~~~~la~Gs 622 (1107)
.+|+...++.|+.|+.++.||+.+... +..+ ++|.++|.|+.|+|+|...|+|+
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeE-------------------------i~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEE-------------------------IGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCce-------------------------eeecccCCCCceEEEEECCCCceeeccC
Confidence 999999999999999999999988632 2333 78999999999999999999999
Q ss_pred CCCeEEEEEcCCCe
Q 001287 623 ECGRVAVLDMNLLS 636 (1107)
Q Consensus 623 ~dg~V~iwd~~~~~ 636 (1107)
.||+|+||.+.-+.
T Consensus 287 EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGK 300 (334)
T ss_pred CCceEEEEEecCCC
Confidence 99999999986543
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.2e-20 Score=199.95 Aligned_cols=204 Identities=15% Similarity=0.228 Sum_probs=164.8
Q ss_pred eeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-e--ee--------------e--CCCCCCEEEEEEEeC
Q 001287 27 RIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-G--LL--------------I--SPSQLPYKNLEFLQN 87 (1107)
Q Consensus 27 ~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~--~~--------------~--~~h~~~V~~l~fs~d 87 (1107)
+...+-.|..+++|++++|+.++..+++.||.|.=|+..... . +. . ..|...|.+++.|+|
T Consensus 134 ~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 134 DFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred cceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 356666788999999999999999999999999999863221 1 11 1 257778999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccc
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1107)
+.||++++.|+.|.|||.++.+.+..+ .|.+.|.+++|--....|++++.|.+|++|+++.. ..+. .+-+|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--s~ve---tlyGHq-- 286 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--SYVE---TLYGHQ-- 286 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--HHHH---HHhCCc--
Confidence 999999999999999999999998885 78899999999999999999999999999998842 2221 244555
Q ss_pred cccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCC
Q 001287 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1107)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
+.|.+|.- .+... +++++ .|+++++|++....-..++++
T Consensus 287 ----------d~v~~Ida--L~reR-~vtVGgrDrT~rlwKi~eesqlifrg~--------------------------- 326 (479)
T KOG0299|consen 287 ----------DGVLGIDA--LSRER-CVTVGGRDRTVRLWKIPEESQLIFRGG--------------------------- 326 (479)
T ss_pred ----------cceeeech--hcccc-eEEeccccceeEEEeccccceeeeeCC---------------------------
Confidence 77888876 32344 55555 999999999976655556665
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
.+.+.|+||. +..++++|+.+|.|.+|++...
T Consensus 327 ---~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 327 ---EGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred ---CCCeeeEEEe--cccceeeccCCceEEEeeeccc
Confidence 6789999976 5678999999999999998644
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=4.1e-20 Score=216.51 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=162.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-ceee-eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
+...+.|..|+ ..++++|+.|++|++|+.... .... ..+|.+.|.+++|...+.+|++++.|.+++|||..++++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 57788899998 788999999999999998554 4445 7899999999999987889999999999999999999999
Q ss_pred eee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 112 ~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
+++ .|.+.|.++.. ...++++|+.|.+|+||+++. +..+.+ +.+|. ++|.+|.. ++
T Consensus 285 ~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n--~~~l~l---~~~h~------------~~V~~v~~----~~ 341 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTN--GACLNL---LRGHT------------GPVNCVQL----DE 341 (537)
T ss_pred EEecCCCceEEEEEc--cCceEeeccCCceEEEEeccC--cceEEE---ecccc------------ccEEEEEe----cC
Confidence 998 58888888866 466788889999999999984 555543 44465 89999999 46
Q ss_pred CEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 191 NRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
.++++|+.||+|+|||+.+++++. +.|| ..+|+++.+. .. ..+++|+
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH------------------------------~~~V~sl~~~-~~-~~~~Sgs 389 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGH------------------------------TGRVYSLIVD-SE-NRLLSGS 389 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeecCC------------------------------cceEEEEEec-Cc-ceEEeee
Confidence 779999999999999999988765 5566 7889999743 32 8999999
Q ss_pred cCCcEEEEeCCCC
Q 001287 270 IDGDILLWNTSTT 282 (1107)
Q Consensus 270 ~dG~I~lWd~~~~ 282 (1107)
.|++|++||+.+.
T Consensus 390 ~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 390 LDTTIKVWDLRTK 402 (537)
T ss_pred eccceEeecCCch
Confidence 9999999999754
No 81
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=4.6e-19 Score=194.70 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=124.0
Q ss_pred cCCCCcEEEE--EecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEe-CCCeEEEeccCceEEEEEecC
Q 001287 491 CHSVDRVYLA--GYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 491 ~s~~~~~laT--gs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp-d~~~Lasg~~dg~V~vw~~~~ 567 (1107)
|+.+...++. ++.-|.|-|++++.+...+=-.+..- -....|+.++|.| |...||++++||.|+||.+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-------~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-------FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-------ccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 4445555543 35678999999886552211111110 1234799999999 677899999999999999987
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEeecCCC
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~-~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~ 646 (1107)
+.-..+ -..+-..+..|...|++|.|+|- ...||+++.|-+|++||+...... ..+.+
T Consensus 660 ~gl~e~------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~---~~l~g 718 (1012)
T KOG1445|consen 660 NGLPEN------------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY---SRLVG 718 (1012)
T ss_pred CCCCcc------------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh---heecc
Confidence 642211 01134567899999999999994 568999999999999999988766 46678
Q ss_pred CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
|...|..++|+ |++..+++.++||+|+|+...+++
T Consensus 719 HtdqIf~~AWS----------------------pdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 719 HTDQIFGIAWS----------------------PDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred CcCceeEEEEC----------------------CCCcceeeeecCceEEEeCCCCCC
Confidence 99999999999 668889999999999999988765
No 82
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-18 Score=194.71 Aligned_cols=294 Identities=15% Similarity=0.225 Sum_probs=215.2
Q ss_pred CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee---ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCC
Q 001287 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~---~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~ 151 (1107)
...+|++|+|+.+...|+.+=.+|.|.+|++...=++... .....|.+++|. .+.+|++.+.+|.|.-||+-.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~--- 99 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT--- 99 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc---
Confidence 3568999999999999999999999999999987443332 344689999999 566788888999999999864
Q ss_pred ceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCC
Q 001287 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1107)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~ 231 (1107)
+.+. |.+.... ++|-+++-+| .++.+++|+.||.+..++...+.+....-. -
T Consensus 100 -lk~~-~~~d~~g------------g~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r~l---~--------- 151 (691)
T KOG2048|consen 100 -LKQK-YNIDSNG------------GAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKRSL---M--------- 151 (691)
T ss_pred -Ccee-EEecCCC------------cceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEeec---c---------
Confidence 2221 4454433 7899999998 467799999999887888877777543321 0
Q ss_pred CCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceE
Q 001287 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVI 311 (1107)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 311 (1107)
-..++|-++.|. |++..|++|+.||.|++||...+... . +.
T Consensus 152 ---------------rq~sRvLslsw~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~-----------~------------~~ 192 (691)
T KOG2048|consen 152 ---------------RQKSRVLSLSWN-PTGTKIAGGSIDGVIRIWDVKSGQTL-----------H------------II 192 (691)
T ss_pred ---------------cccceEEEEEec-CCccEEEecccCceEEEEEcCCCceE-----------E------------Ee
Confidence 015789999997 99999999999999999999765211 0 00
Q ss_pred EEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceE
Q 001287 312 VLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1107)
Q Consensus 312 ~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l 391 (1107)
+.+-+. +
T Consensus 193 --------------------~~~~d~----------l------------------------------------------- 199 (691)
T KOG2048|consen 193 --------------------TMQLDR----------L------------------------------------------- 199 (691)
T ss_pred --------------------eecccc----------c-------------------------------------------
Confidence 000000 0
Q ss_pred EEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCcc
Q 001287 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1107)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1107)
.+.....+|..
T Consensus 200 ---~k~~~~iVWSv------------------------------------------------------------------ 210 (691)
T KOG2048|consen 200 ---SKREPTIVWSV------------------------------------------------------------------ 210 (691)
T ss_pred ---ccCCceEEEEE------------------------------------------------------------------
Confidence 00001111110
Q ss_pred CCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeE
Q 001287 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL 551 (1107)
Q Consensus 472 ~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~L 551 (1107)
.+-. ...||+|-.-|+|++||...+++. ....-|.+.|.||+..+++.++
T Consensus 211 ------------------~~Lr-d~tI~sgDS~G~V~FWd~~~gTLi-----------qS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 211 ------------------LFLR-DSTIASGDSAGTVTFWDSIFGTLI-----------QSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred ------------------EEee-cCcEEEecCCceEEEEcccCcchh-----------hhhhhhhcceeEEEEcCCCCeE
Confidence 0000 017899999999999999999976 4466788899999999999999
Q ss_pred EEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001287 552 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1107)
Q Consensus 552 asg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd 631 (1107)
++++.|+.|..|...+...+ +........|...|.+++..++ .+.+|+.|+++.+--
T Consensus 261 fsaGvd~~ii~~~~~~~~~~---------------------wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSE---------------------WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred EEccCCCceEEEEecCCccc---------------------eeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 99999999999998876432 1122334679999999999988 799999999988866
Q ss_pred cCC
Q 001287 632 MNL 634 (1107)
Q Consensus 632 ~~~ 634 (1107)
...
T Consensus 318 s~~ 320 (691)
T KOG2048|consen 318 SRE 320 (691)
T ss_pred ccc
Confidence 554
No 83
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=7.2e-19 Score=206.11 Aligned_cols=296 Identities=15% Similarity=0.108 Sum_probs=197.0
Q ss_pred CccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeecccee--eeeecCCCCCeEEEEEEe-CCCeEEEeccCceEEEE
Q 001287 487 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQ--GIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIY 563 (1107)
Q Consensus 487 ~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~--~~~l~~h~~~Vt~l~fsp-d~~~Lasg~~dg~V~vw 563 (1107)
.....++++..+++++.+.....|+..++.......-.++.. ...+.+|..+|++++|+| ++.+|++|+.||+|+||
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW 103 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 344567787788999999998999987765321111111111 123779999999999999 88999999999999999
Q ss_pred EecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEee
Q 001287 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTD 642 (1107)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~-~~la~Gs~dg~V~iwd~~~~~~~~~~~ 642 (1107)
++....... ....++..+.+|...|.+++|+|++ .+|++|+.|++|+|||+.++..+ .
T Consensus 104 di~~~~~~~------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~---~ 162 (493)
T PTZ00421 104 GIPEEGLTQ------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV---E 162 (493)
T ss_pred ecCCCcccc------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE---E
Confidence 997642100 0012456778999999999999985 69999999999999999998776 3
Q ss_pred cCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccceeeEEE
Q 001287 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISME 722 (1107)
Q Consensus 643 ~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~~~~~~ 722 (1107)
.+.+|...|.+++|+ |++.+|++++.|+.|++||..+|+.+.+...+... ..
T Consensus 163 ~l~~h~~~V~sla~s----------------------pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~---~~--- 214 (493)
T PTZ00421 163 VIKCHSDQITSLEWN----------------------LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA---KS--- 214 (493)
T ss_pred EEcCCCCceEEEEEE----------------------CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC---cc---
Confidence 556799999999999 55888999999999999999988766443111000 00
Q ss_pred EecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEe-----cCeeEEEecc
Q 001287 723 VIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCC-----EDSVRLYSRK 797 (1107)
Q Consensus 723 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~-----e~~l~v~sl~ 797 (1107)
....|.+. ..++++++ +..|++|.+.
T Consensus 215 -----------------------------------------------~~~~w~~~--~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 215 -----------------------------------------------QRCLWAKR--KDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred -----------------------------------------------eEEEEcCC--CCeEEEEecCCCCCCeEEEEeCC
Confidence 00111111 33555543 3489999987
Q ss_pred ccccccceeeeeecCCCcc-eeeeeeecCCceeEEEEEe-ecCcEEEeecCCccccccccccceeeceec-Ccccccccc
Q 001287 798 SVIQGNNKTVQKVKHKNRC-CWASTIEKDEKVCGLLLLF-QTGAVQIRSLPDLELVMESSLMSILRWNFK-ANMDKTISA 874 (1107)
Q Consensus 798 ~~~~g~~~~i~k~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~G~i~i~slp~l~~~~~~~~~~~~~~~~~-~~~~~~~~~ 874 (1107)
+. ..+++...+...+ .+...|.. .+..|++.. .||.|++|++.+-+++... .|. ....+.+|+
T Consensus 246 ~~----~~p~~~~~~d~~~~~~~~~~d~--d~~~L~lggkgDg~Iriwdl~~~~~~~~~--------~~~s~~~~~g~~~ 311 (493)
T PTZ00421 246 KM----ASPYSTVDLDQSSALFIPFFDE--DTNLLYIGSKGEGNIRCFELMNERLTFCS--------SYSSVEPHKGLCM 311 (493)
T ss_pred CC----CCceeEeccCCCCceEEEEEcC--CCCEEEEEEeCCCeEEEEEeeCCceEEEe--------eccCCCCCcceEe
Confidence 73 3455544444333 33333333 344566655 5999999999987755432 222 233455665
Q ss_pred cCCcEEE-EcCceeEEEEeecC
Q 001287 875 DNGQITL-ANGSEVAFVNLLAG 895 (1107)
Q Consensus 875 s~Gq~~l-~~~~e~~~~s~~~~ 895 (1107)
. =...+ |.-+|++++--+..
T Consensus 312 ~-pk~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 312 M-PKWSLDTRKCEIARFYALTY 332 (493)
T ss_pred c-ccccccccceeeeEEEEecC
Confidence 4 11122 44477777655443
No 84
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=9.5e-20 Score=185.24 Aligned_cols=199 Identities=13% Similarity=0.166 Sum_probs=155.0
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCc---ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 34 IPATASILAFDH-IQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 34 ~~~~i~~lafsp-~~~~LA~Gs~dg~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
-..+|++|+||| ...+++.|+-||+||+|++... .-.-...|++||-+++|+.||..+++++.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 346799999999 5567779999999999999653 222455799999999999999999999999999999999999
Q ss_pred eeeeeccCCCeEEEEEecCCC--EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 110 LACCLKWESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 110 ~~~~~~~~~~Vt~l~~~~~~~--~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
....-.|.++|.++.|-+... .|++|+.|.+++.||..... .+- ...+| +.|+++..
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~--pv~-t~~LP---------------eRvYa~Dv--- 164 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN--PVA-TLQLP---------------ERVYAADV--- 164 (347)
T ss_pred eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC--eee-eeecc---------------ceeeehhc---
Confidence 988889999999999998776 89999999999999976422 111 12233 45666654
Q ss_pred CCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 188 ~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
....++++..+..|.+|+++.+......-. ..+ .-.+.|++.+ .|.+..+.
T Consensus 165 -~~pm~vVata~r~i~vynL~n~~te~k~~~--SpL-------------------------k~Q~R~va~f-~d~~~~al 215 (347)
T KOG0647|consen 165 -LYPMAVVATAERHIAVYNLENPPTEFKRIE--SPL-------------------------KWQTRCVACF-QDKDGFAL 215 (347)
T ss_pred -cCceeEEEecCCcEEEEEcCCCcchhhhhc--Ccc-------------------------cceeeEEEEE-ecCCceEe
Confidence 344588999999999999988754322110 001 3456777766 78888899
Q ss_pred EEcCCcEEEEeCCCC
Q 001287 268 GYIDGDILLWNTSTT 282 (1107)
Q Consensus 268 g~~dG~I~lWd~~~~ 282 (1107)
|+..|.+.+..+...
T Consensus 216 GsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDP 230 (347)
T ss_pred eeecceEEEEecCCC
Confidence 999999999888754
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.7e-20 Score=186.06 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=121.1
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEe-CCCeEEEeccCceEEEEEecCCCCCc
Q 001287 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAK 572 (1107)
Q Consensus 494 ~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp-d~~~Lasg~~dg~V~vw~~~~~~~~~ 572 (1107)
.++++++++.||+.||||+....-. +.+..|...|.|+.|+. +.+.|++|+.|+.|++||+..-.
T Consensus 159 ~~nlfas~Sgd~~l~lwdvr~~gk~-----------~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--- 224 (311)
T KOG0277|consen 159 IPNLFASASGDGTLRLWDVRSPGKF-----------MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--- 224 (311)
T ss_pred CCCeEEEccCCceEEEEEecCCCce-----------eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---
Confidence 3458999999999999998765433 23667888999999998 55679999999999999998753
Q ss_pred cceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCce
Q 001287 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1107)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~-~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V 651 (1107)
.++..+.+|.-.|..++|||.. .+||+++-|-+++|||...+.-.. .....|+.-|
T Consensus 225 ---------------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--e~~~~HtEFv 281 (311)
T KOG0277|consen 225 ---------------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--ETVDHHTEFV 281 (311)
T ss_pred ---------------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh--hhhhccceEE
Confidence 1466778999999999999964 689999999999999998554331 3445699999
Q ss_pred EEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 652 ~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
-.+.|+.. +..++++.+-|+.++||+.
T Consensus 282 ~g~Dws~~---------------------~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 282 CGLDWSLF---------------------DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eccccccc---------------------cCceeeecccccceeeecc
Confidence 99999954 3567999999999999985
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.7e-20 Score=215.77 Aligned_cols=297 Identities=14% Similarity=0.146 Sum_probs=197.9
Q ss_pred CCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-cc----------CCCeEEEEEecC---CC--EEEEEcC
Q 001287 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KW----------ESNITAFSVISG---SH--FMYIGDE 137 (1107)
Q Consensus 74 ~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~----------~~~Vt~l~~~~~---~~--~l~~g~~ 137 (1107)
+|.+.|.++.||+||+|||+++.|+.|+||.+...+..... .. .+.+..+..+.. ++ ..-.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999999999999999999999999998764331111 00 011111111110 00 0011111
Q ss_pred CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeC
Q 001287 138 NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 138 dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g 217 (1107)
...+.+ .... ..+.. +-+..-.+|.+.|..+.|+- ..+||+++.|.+|+||++....++..+.
T Consensus 345 s~~~~~-p~~~--f~f~e-----------kP~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 345 SPCVLL-PLKA--FVFSE-----------KPFCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred CccccC-CCcc--ccccc-----------cchhhhhccchhheeccccc---CCeeEeccccccEEeecCCCcceeeEEe
Confidence 111000 0000 00000 01111134558899999954 4469999999999999999999999998
Q ss_pred CccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCcee
Q 001287 218 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVV 297 (1107)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~ 297 (1107)
| ..-|||+.|+.-|.+++++|+-||.|+||++...+
T Consensus 408 H------------------------------ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-------------- 443 (712)
T KOG0283|consen 408 H------------------------------NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-------------- 443 (712)
T ss_pred c------------------------------CCeeEEEEecccCCCcEeecccccceEEeecCcCe--------------
Confidence 8 77899999986788999999999999999996431
Q ss_pred eeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEc
Q 001287 298 KLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILL 377 (1107)
Q Consensus 298 ~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~ 377 (1107)
.+.|....
T Consensus 444 --------------Vv~W~Dl~---------------------------------------------------------- 451 (712)
T KOG0283|consen 444 --------------VVDWNDLR---------------------------------------------------------- 451 (712)
T ss_pred --------------eEeehhhh----------------------------------------------------------
Confidence 01111100
Q ss_pred cCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhH
Q 001287 378 SSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSE 457 (1107)
Q Consensus 378 p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~ 457 (1107)
T Consensus 452 -------------------------------------------------------------------------------- 451 (712)
T KOG0283|consen 452 -------------------------------------------------------------------------------- 451 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCC
Q 001287 458 IATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA 537 (1107)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~ 537 (1107)
..+..++++|||+..+.|+-+|.++||+.....++.-..+.....+ -..|.
T Consensus 452 --------------------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K--k~~~~- 502 (712)
T KOG0283|consen 452 --------------------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK--KKQGK- 502 (712)
T ss_pred --------------------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc--cccCc-
Confidence 0112347889999999999999999999998887644433321111 22344
Q ss_pred CeEEEEEEeCCC-eEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecC--cCEEEEEEcCC
Q 001287 538 PVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN--SPVRALQFTSS 614 (1107)
Q Consensus 538 ~Vt~l~fspd~~-~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~--~~Vt~la~sp~ 614 (1107)
.||.+.|.|... .+++.+.|..||||+..... ++..|+++. ..=+.-.|+.|
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-------------------------lv~KfKG~~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-------------------------LVHKFKGFRNTSSQISASFSSD 557 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchh-------------------------hhhhhcccccCCcceeeeEccC
Confidence 899999998544 47778899999999986541 334455432 22345678999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeE
Q 001287 615 GAKLAVGFECGRVAVLDMNLLSV 637 (1107)
Q Consensus 615 ~~~la~Gs~dg~V~iwd~~~~~~ 637 (1107)
|++|++|++|..|+||++.....
T Consensus 558 gk~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred CCEEEEeecCceEEEEeCCCCcc
Confidence 99999999999999999976543
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-19 Score=203.97 Aligned_cols=275 Identities=13% Similarity=0.200 Sum_probs=205.0
Q ss_pred EEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeecc-CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecce
Q 001287 80 KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPY 158 (1107)
Q Consensus 80 ~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~-~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~ 158 (1107)
.-+.|+..+ ++.++....|.+|+..++.+...... ...|+++.|++++.+|++|..+|.|.|||...... . -
T Consensus 181 nlldWss~n--~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~--~---~ 253 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK--T---R 253 (484)
T ss_pred hHhhcccCC--eEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc--c---c
Confidence 345566433 66666688899999999986655544 78999999999999999999999999999774321 1 1
Q ss_pred eecc-cccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE-E-EeCCccccccccccCCCCCCC
Q 001287 159 NISA-DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-F-VGGGKDLQLKDGVVDSPSEGD 235 (1107)
Q Consensus 159 ~i~~-~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~ 235 (1107)
.+.. |. ..|-+++|. +..+.+|+.+|.|..+|++..+.. . ..+|
T Consensus 254 ~~~~~h~------------~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H----------------- 300 (484)
T KOG0305|consen 254 TLRGSHA------------SRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGH----------------- 300 (484)
T ss_pred cccCCcC------------ceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcc-----------------
Confidence 1333 33 789999994 556999999999999999886432 2 3334
Q ss_pred CccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEe
Q 001287 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHW 315 (1107)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w 315 (1107)
..+|+.+.|. +|+.++++|+.|+.+.|||.... .+..+++..
T Consensus 301 -------------~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~-----------~p~~~~~~H------------- 342 (484)
T KOG0305|consen 301 -------------RQEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSP-----------EPKFTFTEH------------- 342 (484)
T ss_pred -------------cceeeeeEEC-CCCCeeccCCCccceEeccCCCc-----------cccEEEecc-------------
Confidence 8899999996 99999999999999999998432 111111110
Q ss_pred ecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEc
Q 001287 316 STNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLT 395 (1107)
Q Consensus 316 ~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~ 395 (1107)
...|..+.++|-
T Consensus 343 ----------------------------------------------------~aAVKA~awcP~---------------- 354 (484)
T KOG0305|consen 343 ----------------------------------------------------TAAVKALAWCPW---------------- 354 (484)
T ss_pred ----------------------------------------------------ceeeeEeeeCCC----------------
Confidence 000111111111
Q ss_pred cCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCcc
Q 001287 396 SPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIK 475 (1107)
Q Consensus 396 ~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1107)
T Consensus 355 -------------------------------------------------------------------------------- 354 (484)
T KOG0305|consen 355 -------------------------------------------------------------------------------- 354 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCccccCCCCcEEEEE--ecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEE
Q 001287 476 WPLSGGVPSPVPITKCHSVDRVYLAG--YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1107)
Q Consensus 476 wp~~gg~~~~~~~~~~s~~~~~laTg--s~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Las 553 (1107)
...+||+| +.|++|+|||..++.+. . .-.-...|+.|.|++..+.|++
T Consensus 355 ------------------q~~lLAsGGGs~D~~i~fwn~~~g~~i-----------~-~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 355 ------------------QSGLLATGGGSADRCIKFWNTNTGARI-----------D-SVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred ------------------ccCceEEcCCCcccEEEEEEcCCCcEe-----------c-ccccCCceeeEEEcCCCCEEEE
Confidence 11267776 67999999999988854 1 2233468999999999987766
Q ss_pred ec--cCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001287 554 GN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1107)
Q Consensus 554 g~--~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd 631 (1107)
+. .+..|.||++... ..+..+.+|...|..+++||||..+++|+.|.++++|+
T Consensus 405 thG~s~n~i~lw~~ps~-------------------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSM-------------------------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ecCCCCCcEEEEecccc-------------------------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 44 4689999999874 24677889999999999999999999999999999999
Q ss_pred cCCC
Q 001287 632 MNLL 635 (1107)
Q Consensus 632 ~~~~ 635 (1107)
+-+.
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8764
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=1.3e-19 Score=213.44 Aligned_cols=169 Identities=17% Similarity=0.249 Sum_probs=132.8
Q ss_pred eEEEEEcCCCCEEEEEE--CCCcEEEEeCCCc-------------ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEE
Q 001287 38 ASILAFDHIQRLLAIAT--LDGRIKVIGGDGI-------------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs--~dg~I~iw~~~~~-------------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1107)
|-+++.+|++..+|+|+ .||.++||+.+.. .+.....|.+.|.|+.|++||.+|+++|+|+.|.|
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 88999999999999999 9999999986432 12355679999999999999999999999999999
Q ss_pred EEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCC--cEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG--LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 103 WDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg--~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
|+.... .... +.|+..| .+--|+.- +.+.+|. ..|.
T Consensus 96 W~~~~~-~~~~-------------------~fgs~g~~~~vE~wk~~----------~~l~~H~------------~DV~ 133 (942)
T KOG0973|consen 96 WERAEI-GSGT-------------------VFGSTGGAKNVESWKVV----------SILRGHD------------SDVL 133 (942)
T ss_pred eeeccc-CCcc-------------------cccccccccccceeeEE----------EEEecCC------------Cccc
Confidence 997651 1000 1122112 22233321 3355666 7899
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1107)
.+.|+| ++.+|++++-|+.|.|||..+.+.+. +.+| ...|-.+.|.
T Consensus 134 Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H------------------------------~s~VKGvs~D- 180 (942)
T KOG0973|consen 134 DVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH------------------------------QSLVKGVSWD- 180 (942)
T ss_pred eeccCC--CccEEEEecccceEEEEccccceeeeeeecc------------------------------cccccceEEC-
Confidence 999999 68889999999999999999986654 5666 6678889997
Q ss_pred CCCCEEEEEEcCCcEEEEeCCC
Q 001287 260 SSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 260 pdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
|-|++|++-+.|++|++|++.+
T Consensus 181 P~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 181 PIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred CccCeeeeecCCceEEEEEccc
Confidence 9999999999999999999753
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=8.3e-21 Score=200.28 Aligned_cols=198 Identities=15% Similarity=0.132 Sum_probs=159.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc--e-eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--G-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~--~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~ 108 (1107)
.-|.+.+..+.|-++...||+|+.|..|++|+..+.. . -.+.+..++|+.+.|.+++.++++.+.|+.+++||+.+.
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 3456788999999999999999999999999986544 2 256677789999999999999999999999999999999
Q ss_pred eeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 109 SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 109 ~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
+..+++ .|...|+++.|......+++|+.|.+|+.|++.. ....+. .+++ ..+..|...+
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k--~~C~kt--~l~~--------------S~cnDI~~~~- 312 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK--AYCSKT--VLPG--------------SQCNDIVCSI- 312 (459)
T ss_pred hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh--hheecc--cccc--------------ccccceEecc-
Confidence 988877 7999999999998887799999999999999875 222221 1222 2233444422
Q ss_pred CCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 188 ~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
..+++|-.|+.|++||+.+......... .+.|+++.- +++|..|.+
T Consensus 313 ---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~------------------------------gg~vtSl~l-s~~g~~lLs 358 (459)
T KOG0288|consen 313 ---SDVISGHFDKKVRFWDIRSADKTRSVPL------------------------------GGRVTSLDL-SMDGLELLS 358 (459)
T ss_pred ---eeeeecccccceEEEeccCCceeeEeec------------------------------CcceeeEee-ccCCeEEee
Confidence 2388899999999999998876544322 458999994 699999999
Q ss_pred EEcCCcEEEEeCCCC
Q 001287 268 GYIDGDILLWNTSTT 282 (1107)
Q Consensus 268 g~~dG~I~lWd~~~~ 282 (1107)
.+.|.++.+.|+.+.
T Consensus 359 ssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 359 SSRDDTLKVIDLRTK 373 (459)
T ss_pred ecCCCceeeeecccc
Confidence 999999999998754
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.5e-20 Score=181.55 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=204.7
Q ss_pred EEEEEEeC-CCEEEEEe-------CCCcEEEEEcCCC---eeeeeeccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEee
Q 001287 80 KNLEFLQN-QGFLISIT-------NDNEIQVWSLESR---SLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 80 ~~l~fs~d-~~~L~S~s-------~d~~I~vWDl~s~---~~~~~~~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d 147 (1107)
.+++|||- ..+|+.+. ..|.+.|.++... +...++.....+..++|++.. +.+++++.||++++|++.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46778872 23343333 2678999999633 334566778889999999875 688899999999999954
Q ss_pred cCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE-EEEeCCcccccccc
Q 001287 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDG 226 (1107)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~-~~~~g~~~~~~~~~ 226 (1107)
.... .+ ..+..|. ..|.++-|++. .+..+++++-||+|++|+..-... ..+.||
T Consensus 92 ~~s~-Pi---~~~kEH~------------~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh-------- 146 (311)
T KOG0277|consen 92 MPSK-PI---HKFKEHK------------REVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH-------- 146 (311)
T ss_pred CCCc-ch---hHHHhhh------------hheEEeccccc-cceeEEeeccCCceEeecCCCCcceEeecCC--------
Confidence 3222 22 2255555 77999999997 455588889999999999877654 456666
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccC
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (1107)
...|..+.|....++.+++++.||++++||+..... ++
T Consensus 147 ----------------------~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----------~~---------- 184 (311)
T KOG0277|consen 147 ----------------------NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----------FM---------- 184 (311)
T ss_pred ----------------------ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----------ee----------
Confidence 677888898766788999999999999999853200 00
Q ss_pred ccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCC
Q 001287 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1107)
Q Consensus 307 ~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~ 386 (1107)
.|.
T Consensus 185 --------------------------------------~i~--------------------------------------- 187 (311)
T KOG0277|consen 185 --------------------------------------SIE--------------------------------------- 187 (311)
T ss_pred --------------------------------------EEE---------------------------------------
Confidence 000
Q ss_pred CcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccC
Q 001287 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1107)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1107)
.|...+.|..+
T Consensus 188 ---------------------------------------------ah~~Eil~cdw------------------------ 198 (311)
T KOG0277|consen 188 ---------------------------------------------AHNSEILCCDW------------------------ 198 (311)
T ss_pred ---------------------------------------------eccceeEeecc------------------------
Confidence 01111111111
Q ss_pred CCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEe
Q 001287 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1107)
Q Consensus 467 ~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp 546 (1107)
..-+.++++||+.|+.||+||+..-... + ..+.+|..+|..+.|||
T Consensus 199 ------------------------~ky~~~vl~Tg~vd~~vr~wDir~~r~p-l---------~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 199 ------------------------SKYNHNVLATGGVDNLVRGWDIRNLRTP-L---------FELNGHGLAVRKVKFSP 244 (311)
T ss_pred ------------------------cccCCcEEEecCCCceEEEEehhhcccc-c---------eeecCCceEEEEEecCc
Confidence 0123348999999999999998755411 1 24679999999999999
Q ss_pred CC-CeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcC-CCCEEEEEeCC
Q 001287 547 IN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFEC 624 (1107)
Q Consensus 547 d~-~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp-~~~~la~Gs~d 624 (1107)
.. ..||+++.|-+++||+...... ++.+...|+.=|..+.||+ +..++|..+.|
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds------------------------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDS------------------------AIETVDHHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred chhhHhhhccccceEEecccccchh------------------------hhhhhhccceEEeccccccccCceeeecccc
Confidence 65 5799999999999999986532 3455678999999999998 56799999999
Q ss_pred CeEEEEEc
Q 001287 625 GRVAVLDM 632 (1107)
Q Consensus 625 g~V~iwd~ 632 (1107)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999985
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=2.3e-19 Score=210.23 Aligned_cols=277 Identities=18% Similarity=0.273 Sum_probs=218.4
Q ss_pred CCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee-e-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCC
Q 001287 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC-L-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1107)
Q Consensus 74 ~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~-~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~ 151 (1107)
.|...+.+.+|. .+++++++.+++|.+||..++..+.. + .|.+.|.++++...++++++|+.|.+++||++.. |
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--g 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--G 281 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--C
Confidence 356678999998 47899999999999999999977655 4 8999999999999899999999999999999654 5
Q ss_pred ceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeC-CccccccccccCC
Q 001287 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG-GKDLQLKDGVVDS 230 (1107)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g-~~~~~~~~~~~~~ 230 (1107)
..... +.+|. ..|.++...+ .++++|+.|.+|++|++.++..+.+.+ |
T Consensus 282 ~C~~~---l~gh~------------stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h------------ 330 (537)
T KOG0274|consen 282 ECTHS---LQGHT------------SSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGH------------ 330 (537)
T ss_pred cEEEE---ecCCC------------ceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccc------------
Confidence 66643 77777 8899998844 357788999999999999998887765 6
Q ss_pred CCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccce
Q 001287 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 310 (1107)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 310 (1107)
..+|.++.. ++..+++|+.||+|++||+.+++...
T Consensus 331 ------------------~~~V~~v~~---~~~~lvsgs~d~~v~VW~~~~~~cl~------------------------ 365 (537)
T KOG0274|consen 331 ------------------TGPVNCVQL---DEPLLVSGSYDGTVKVWDPRTGKCLK------------------------ 365 (537)
T ss_pred ------------------cccEEEEEe---cCCEEEEEecCceEEEEEhhhceeee------------------------
Confidence 778999884 38899999999999999997442110
Q ss_pred EEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcce
Q 001287 311 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 390 (1107)
Q Consensus 311 ~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~ 390 (1107)
.+.
T Consensus 366 ----------------------------------sl~------------------------------------------- 368 (537)
T KOG0274|consen 366 ----------------------------------SLS------------------------------------------- 368 (537)
T ss_pred ----------------------------------eec-------------------------------------------
Confidence 000
Q ss_pred EEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCc
Q 001287 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1107)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1107)
...+.++ +.
T Consensus 369 ----gH~~~V~-------------------------------------sl------------------------------ 377 (537)
T KOG0274|consen 369 ----GHTGRVY-------------------------------------SL------------------------------ 377 (537)
T ss_pred ----CCcceEE-------------------------------------EE------------------------------
Confidence 0000111 00
Q ss_pred cCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCC-ceeEEEeeccceeeeeecCCCCCeEEEEEEeCCC
Q 001287 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1107)
Q Consensus 471 ~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~-~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~ 549 (1107)
.+... +.+++|+.|++|++||+.+. .+. ..+.+|..-|+.+.+ .++
T Consensus 378 -------------------~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~-----------~tl~~h~~~v~~l~~--~~~ 424 (537)
T KOG0274|consen 378 -------------------IVDSE-NRLLSGSLDTTIKVWDLRTKRKCI-----------HTLQGHTSLVSSLLL--RDN 424 (537)
T ss_pred -------------------EecCc-ceEEeeeeccceEeecCCchhhhh-----------hhhcCCccccccccc--ccc
Confidence 00011 38999999999999999998 555 447788888866655 688
Q ss_pred eEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEee-cCcCEEEEEEcCCCCEEEEEeCCCeEE
Q 001287 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVA 628 (1107)
Q Consensus 550 ~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vt~la~sp~~~~la~Gs~dg~V~ 628 (1107)
+|++++.||+|++||.... .|+.++.. |.+.|+++++. ...+++++.||++.
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~-------------------------~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG-------------------------ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVK 477 (537)
T ss_pred eeEeccccccEEEeecccC-------------------------ceeeeeccCCcccEEEeecC--cceEEEEecCCeeE
Confidence 9999999999999988776 36677777 77999999987 45688999999999
Q ss_pred EEEcCCCeEE
Q 001287 629 VLDMNLLSVL 638 (1107)
Q Consensus 629 iwd~~~~~~~ 638 (1107)
+||++++...
T Consensus 478 l~dl~~~~~~ 487 (537)
T KOG0274|consen 478 LWDLRSGTLI 487 (537)
T ss_pred EEecccCchh
Confidence 9999998876
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=195.17 Aligned_cols=200 Identities=14% Similarity=0.139 Sum_probs=161.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
-.++.|+.++|+|...+=.+-+..-++.||+....+.. .++.....|.++.|-.||..|+.|...|.|+|+|..++.++
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 34578999999997765444445678999998776655 46667889999999999999999999999999998887777
Q ss_pred eee-ccCCCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 112 CCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 112 ~~~-~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
..+ .|+.+|..+.|+|+.+ .+++|+.|+.+++|+++.. . + .+.+.+|+ +.|.|.+|+|. +
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--~-v--~~~l~~ht------------DYVR~g~~~~~-~ 165 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--Y-V--QAELSGHT------------DYVRCGDISPA-N 165 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--E-E--EEEecCCc------------ceeEeeccccC-C
Confidence 666 7889999999998876 5567778888899998853 2 2 26688888 99999999997 4
Q ss_pred CCEEEEEECCCeEEEEEccCC-EEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE
Q 001287 190 GNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1107)
+..+++|+.||.|++||.+.. ..+..+.| ..+|.++++. |.|+.|+++
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~~~v~elnh------------------------------g~pVe~vl~l-psgs~iasA 214 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLTSRVVELNH------------------------------GCPVESVLAL-PSGSLIASA 214 (487)
T ss_pred CeEEEecCCCceEEEEEeccCCceeEEecC------------------------------CCceeeEEEc-CCCCEEEEc
Confidence 556999999999999999886 44444445 7789999987 889988887
Q ss_pred EcCCcEEEEeCCCC
Q 001287 269 YIDGDILLWNTSTT 282 (1107)
Q Consensus 269 ~~dG~I~lWd~~~~ 282 (1107)
+- ..+++||+.++
T Consensus 215 gG-n~vkVWDl~~G 227 (487)
T KOG0310|consen 215 GG-NSVKVWDLTTG 227 (487)
T ss_pred CC-CeEEEEEecCC
Confidence 64 57999999644
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=8.4e-20 Score=185.39 Aligned_cols=170 Identities=16% Similarity=0.343 Sum_probs=135.2
Q ss_pred ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC------------------eee-eeeccCCCeEEEEEecC
Q 001287 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR------------------SLA-CCLKWESNITAFSVISG 128 (1107)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~------------------~~~-~~~~~~~~Vt~l~~~~~ 128 (1107)
|...+..|.+++++-+|++||.++++++.|-.|++.|++.- -++ +.+.|..+|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 44567789999999999999999999999999999999721 012 33367789999999999
Q ss_pred CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc
Q 001287 129 SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1107)
Q Consensus 129 ~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~ 208 (1107)
...|++|+.|++|+++|+... -.+..+++-.+. .+|.++.||| .|.+|++|...-++++||+.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~---saKrA~K~~qd~------------~~vrsiSfHP--sGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKT---SAKRAFKVFQDT------------EPVRSISFHP--SGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred hheEEeccCCCeEEEEecccH---HHHHHHHHhhcc------------ceeeeEeecC--CCceEEEecCCCceeEEecc
Confidence 999999999999999998742 111112232222 6799999999 58889999999999999999
Q ss_pred CCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 209 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 209 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
+.++...... +.++.+.|+++-+. +.|+..++|+.||.|++||--+
T Consensus 247 T~QcfvsanP--------------------------d~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 247 TYQCFVSANP--------------------------DDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred ceeEeeecCc--------------------------ccccccceeEEEec-CCccEEEEeccCCcEEeecccc
Confidence 9876432111 11237789999985 9999999999999999999753
No 94
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.8e-18 Score=196.08 Aligned_cols=547 Identities=18% Similarity=0.202 Sum_probs=320.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCC---CEEEEEeCCCcEEEEEcC
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQ---GFLISITNDNEIQVWSLE 106 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~---~~L~S~s~d~~I~vWDl~ 106 (1107)
.-|....-..-.|++|++++...+ +..|+||...+.+++ .+..|..+++.+.+.|.. .++++++.||+|++||+.
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 344444455578999999998776 578999999666554 677899999999998854 478899999999999999
Q ss_pred CCeeeeeeccCCCeEEEEEecC----CCEEEEEcCCCcEEEEEeecCCCceeecce--eecccccccccCCCCCCCCCeE
Q 001287 107 SRSLACCLKWESNITAFSVISG----SHFMYIGDENGLMSVIKYDADEGKLFQLPY--NISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 107 s~~~~~~~~~~~~Vt~l~~~~~----~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~--~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
.+.++..+....++.++.+.|. ...++++.++-.+ ...-. .++....+ .+.... ... +..........
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~--~~~~s--~~~~~q~~~~~~~t~~-~~~-~d~~~~~~~~~ 164 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI--LTTFS--KKLSKQSSRFVLATFD-SAK-GDFLKEHQEPK 164 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeeccccee--eeecc--cccccceeeeEeeecc-ccc-hhhhhhhcCCc
Confidence 9999999877777776666422 1122233333211 11000 01110001 111000 000 00000112256
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
+|.+++ .+. +.....+..+.+|+..+.. ....++ +.. ..+...+++..+ +|
T Consensus 165 ~I~~~~--~ge-~~~i~~~~~~~~~~v~~~~-~~~~~~-~~~-----------------------~~Htf~~t~~~~-sp 215 (792)
T KOG1963|consen 165 SIVDNN--SGE-FKGIVHMCKIHIYFVPKHT-KHTSSR-DIT-----------------------VHHTFNITCVAL-SP 215 (792)
T ss_pred cEEEcC--Cce-EEEEEEeeeEEEEEecccc-eeeccc-hhh-----------------------hhhcccceeEEe-cc
Confidence 777766 465 4444555556788887755 222221 100 112445888885 59
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeec--ccccCCCCCceEEEEeCCCCC
Q 001287 261 SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWST--NKESRSNIDGRLFVYGGDEIG 338 (1107)
Q Consensus 261 dg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~--~~~~~~~~d~~llv~gg~~~~ 338 (1107)
+++++++|..||.|++|.--.. .........+||+. ..+++++.+|.+|++||.+.
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~---------------------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~- 273 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGS---------------------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG- 273 (792)
T ss_pred ccceEEEeccCCcEEEEecccc---------------------ccccccceEEEecccccceeEEecCCceEeecccce-
Confidence 9999999999999999975421 12445667889994 55678999999999999997
Q ss_pred CcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCC
Q 001287 339 SEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKK 418 (1107)
Q Consensus 339 ~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~ 418 (1107)
++.+|...-.+ . ++--.+.+++..+.++|++. ...+.+++.++++.....+........-.
T Consensus 274 ------VLv~Wq~~T~~-k----qfLPRLgs~I~~i~vS~ds~--------~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 274 ------VLVLWQLETGK-K----QFLPRLGSPILHIVVSPDSD--------LYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred ------EEEEEeecCCC-c----ccccccCCeeEEEEEcCCCC--------eEEEEecCceEEEEeccchhhhhhccCcc
Confidence 78777543211 1 13334667899999998753 67777889999988766665544433322
Q ss_pred CCCCC-ccCCccccc---CCCceeEEEEEeccCCCCCchhhhHHHhh-ccccCCCCccCCccccccCC--CCCCCCcccc
Q 001287 419 PSVCP-VEFPGVIPI---SDPIMTVAEFMLLPFGGHSSKGLSEIATF-TKLHSSHTQAGHIKWPLSGG--VPSPVPITKC 491 (1107)
Q Consensus 419 ~~~~~-~~~~~~~~~---~~~~it~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wp~~gg--~~~~~~~~~~ 491 (1107)
+..+. ...+..++. .+|......+..-+.. -.|..+... .-++. +....+ +..|. +.-.+..++.
T Consensus 335 ~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~----vQ~ydl~td~~i~~~---~v~~~n-~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH----VQFYDLYTDSTIYKL---QVCDEN-YSDGDVNIQVGITAVAR 406 (792)
T ss_pred CCCccccccccccceeEEEcCCCCceeecCCCce----EEEEeccccceeeeE---EEEeec-ccCCcceeEEeeeeehh
Confidence 21111 111111110 0111111111100000 001000000 00000 000000 01111 1112223355
Q ss_pred CCCCcEEEEE--------ecCCc--EEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeC-CC-eEEEeccCce
Q 001287 492 HSVDRVYLAG--------YHDGS--VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NS-SLAVGNEFGL 559 (1107)
Q Consensus 492 s~~~~~laTg--------s~Dgt--IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd-~~-~Lasg~~dg~ 559 (1107)
+-.+++++|+ ..||. +|+|-.....-. +.|++.+. ..|...+.+.+|++. .. .+++++.||.
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt--~~L~T~I~----~PH~~~~vat~~~~~~rs~~~vta~~dg~ 480 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT--FILNTKIN----NPHGNAFVATIFLNPTRSVRCVTASVDGD 480 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce--eEEEEEEe----cCCCceeEEEEEecCcccceeEEeccCCe
Confidence 5668888887 44554 789987755532 44443332 256666666666543 33 7999999999
Q ss_pred EEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 001287 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLF 639 (1107)
Q Consensus 560 V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~ 639 (1107)
++||-+....+ ..+...++.|...-..|..++++++|+.||.+||+|.+ ++|.+||..++..+.
T Consensus 481 ~KiW~~~~~~n---------------~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~-~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 481 FKIWVFTDDSN---------------IYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFD-DTITIWDYDTKNELL 544 (792)
T ss_pred EEEEEEecccc---------------cCcCccceEEeeeeccccCcccchhhcCCCcEEEEecC-CEEEEecCCChhhhh
Confidence 99999966532 12224556677766679999999999999998888876 569999999854332
Q ss_pred EeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceec
Q 001287 640 FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1107)
Q Consensus 640 ~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~ 706 (1107)
. ....-..++..+.|..... ....++...-.++.+|+.-++.++-
T Consensus 545 ~--~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 545 C--TEGSRNWPIAELLFTAQTQ--------------------NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred c--cccccccchHhHhhhcccc--------------------cccceeeccCceEehHhhhhhheec
Confidence 1 1122445566666664311 2235556667789999998777765
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.2e-19 Score=182.44 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=162.3
Q ss_pred eeeeec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CcceeeeCCCCCCEEEEEEEeCCC--EEEEEeCCCcEEE
Q 001287 27 RIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQG--FLISITNDNEIQV 102 (1107)
Q Consensus 27 ~~~~~~-G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~-~~~~~~~~~h~~~V~~l~fs~d~~--~L~S~s~d~~I~v 102 (1107)
-..++| .|.+.|+|+|.+ ++++|+|+.|-+|+|||.. ..+.-.+..|.+.|++|.|.++.. .|+|++.||.|.+
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 344554 788999999997 8999999999999999995 455567888999999999999865 8999999999999
Q ss_pred EEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 103 WSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 103 WDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
|+..+-.++.++ .|.+.|+.++++|.+++-++.+.|+.++.|++-..++... .+-. ..-+.
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-----~~L~-------------~~at~ 173 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-----LNLK-------------NKATL 173 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee-----eccC-------------Cccee
Confidence 999999999888 6888999999999999999999999999999875433322 2211 22455
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd 261 (1107)
|.|.| .|.+++++..++. -+|.+....+...... +.++.|+-|. +
T Consensus 174 v~w~~--~Gd~F~v~~~~~i-~i~q~d~A~v~~~i~~------------------------------~~r~l~~~~l--~ 218 (362)
T KOG0294|consen 174 VSWSP--QGDHFVVSGRNKI-DIYQLDNASVFREIEN------------------------------PKRILCATFL--D 218 (362)
T ss_pred eEEcC--CCCEEEEEeccEE-EEEecccHhHhhhhhc------------------------------cccceeeeec--C
Confidence 99987 6888888888775 6888887665433211 4567788864 7
Q ss_pred CCEEEEEEcCCcEEEEeCCC
Q 001287 262 GSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 262 g~~l~sg~~dG~I~lWd~~~ 281 (1107)
+..|++|..|+.|.+||.++
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred CceEEEecCCceEEEeccCC
Confidence 88999999999999999875
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=7.3e-19 Score=179.89 Aligned_cols=195 Identities=13% Similarity=0.142 Sum_probs=161.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
...|+.+.|+|....|++++-||.+++|+.+..+......|..|+.+++|.++ ...++++.||.|+..|+.++......
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec
Confidence 45699999999999999999999999999999898899999999999999986 78999999999999999999988888
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|...|.|+...+....+++|+.|++|++||..... . ..... ....|.++.- .+++|+
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--~------~~~~d----------~~kkVy~~~v----~g~~Lv 149 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV--V------VGTFD----------QGKKVYCMDV----SGNRLV 149 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEeccccc--c------ccccc----------cCceEEEEec----cCCEEE
Confidence 999999999999999999999999999999965311 1 11110 0145888877 677899
Q ss_pred EEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcE
Q 001287 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I 274 (1107)
+|+.+..|.+||++.........- ..+ .-.+.|++.+ |++.-.++++.||.+
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~re--S~l-------------------------kyqtR~v~~~-pn~eGy~~sSieGRV 201 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRE--SSL-------------------------KYQTRCVALV-PNGEGYVVSSIEGRV 201 (323)
T ss_pred EeecCceEEEEEcccccchhhhcc--ccc-------------------------eeEEEEEEEe-cCCCceEEEeecceE
Confidence 999999999999998654331110 001 4468899988 888889999999999
Q ss_pred EEEeCC
Q 001287 275 LLWNTS 280 (1107)
Q Consensus 275 ~lWd~~ 280 (1107)
.+=.++
T Consensus 202 avE~~d 207 (323)
T KOG1036|consen 202 AVEYFD 207 (323)
T ss_pred EEEccC
Confidence 886554
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=2e-19 Score=211.84 Aligned_cols=325 Identities=16% Similarity=0.196 Sum_probs=215.2
Q ss_pred CCCeEEEEEecCCCEEEEEc--CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 117 ESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 117 ~~~Vt~l~~~~~~~~l~~g~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
+..|.+++++|++..+++|+ .||.+.||+.+.--.+... .. ..+.+....-..|.+.|.||.|+| +|.+|+
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----~~-~~l~k~l~~m~~h~~sv~CVR~S~--dG~~lA 85 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----KN-ENLPKHLCTMDDHDGSVNCVRFSP--DGSYLA 85 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhh----hh-cccchhheeeccccCceeEEEECC--CCCeEe
Confidence 35689999999999999999 8999999997741110000 00 001111111233458999999988 899999
Q ss_pred EEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcE
Q 001287 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I 274 (1107)
+|+.|+.|.||.....-.-..+|-++.+.. ...-..+..-..+...|..++|. |++.++++++.|++|
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~-----------vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKN-----------VESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSV 153 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccc-----------cceeeEEEEEecCCCccceeccC-CCccEEEEecccceE
Confidence 999999999999874111111111000000 00000001111238899999996 999999999999999
Q ss_pred EEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccc
Q 001287 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1107)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~ 354 (1107)
.+||..+.+.. ++++
T Consensus 154 iiwn~~tF~~~----------------------------------------------------------~vl~------- 168 (942)
T KOG0973|consen 154 IIWNAKTFELL----------------------------------------------------------KVLR------- 168 (942)
T ss_pred EEEccccceee----------------------------------------------------------eeee-------
Confidence 99998643100 0110
Q ss_pred cccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCC
Q 001287 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1107)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1107)
T Consensus 169 -------------------------------------------------------------------------------- 168 (942)
T KOG0973|consen 169 -------------------------------------------------------------------------------- 168 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCC
Q 001287 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1107)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~ 514 (1107)
||.+.+--+.+.|-|+++||-+.|++|+||+...
T Consensus 169 ----------------------------------------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 169 ----------------------------------------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred ----------------------------------------------cccccccceEECCccCeeeeecCCceEEEEEccc
Confidence 0000000114667788999999999999999877
Q ss_pred CceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC----ceEEEEEecCCCCCccceeeccCcCcceecccC
Q 001287 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF----GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1107)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d----g~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1107)
..+.....-. ..+. .-..-+..+.|||||.+|++...- ..+.|.+-
T Consensus 203 w~i~k~It~p--f~~~---~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR------------------------- 252 (942)
T KOG0973|consen 203 WGIEKSITKP--FEES---PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER------------------------- 252 (942)
T ss_pred ceeeEeeccc--hhhC---CCcceeeecccCCCcCeecchhhccCCcceeEEEec-------------------------
Confidence 6554222111 1111 122357889999999999987642 23333332
Q ss_pred CcceeEEEEeecCcCEEEEEEcCC-----CC------------EEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEE
Q 001287 591 KISLCRAVFSLVNSPVRALQFTSS-----GA------------KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIIS 653 (1107)
Q Consensus 591 ~g~~~~~~~~~h~~~Vt~la~sp~-----~~------------~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~ 653 (1107)
+++.+-..|.+|.+++++++|+|. .+ .+|+|+.|++|.||....++.++..+.+ ...+|..
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~D 330 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVD 330 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh--hcCceee
Confidence 233455678899999999999983 12 6899999999999999988888655543 4578999
Q ss_pred EEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC---ccee
Q 001287 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS---ENMI 705 (1107)
Q Consensus 654 l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~---g~~i 705 (1107)
++|+ |++..|++++.||+|.++..+. |++|
T Consensus 331 msWs----------------------pdG~~LfacS~DGtV~~i~Fee~ElG~~l 363 (942)
T KOG0973|consen 331 MSWS----------------------PDGFSLFACSLDGTVALIHFEEKELGVAL 363 (942)
T ss_pred eeEc----------------------CCCCeEEEEecCCeEEEEEcchHHhCccc
Confidence 9999 6688899999999999999553 5544
No 98
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=207.90 Aligned_cols=249 Identities=15% Similarity=0.158 Sum_probs=186.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc----------------------------c----------------
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI----------------------------E---------------- 68 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~----------------------------~---------------- 68 (1107)
.|.+.|-|+.|++||+|||+|+.||.|+||.+... +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 67889999999999999999999999999986440 0
Q ss_pred --e---------------eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecC-CC
Q 001287 69 --G---------------LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISG-SH 130 (1107)
Q Consensus 69 --~---------------~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~-~~ 130 (1107)
. ....+|.+.|-.|.||.+ .+|+|+|.|.+|++|++....+++.+.|..-|||++|+|- .+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence 0 012249999999999999 7999999999999999999999999999999999999985 57
Q ss_pred EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 131 FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 131 ~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
|+++|+-||.|+||.+.. .+++ +...-+ +-|++++|.| +|+..++|+.+|.+++|+....
T Consensus 424 yFiSGSLD~KvRiWsI~d--~~Vv---~W~Dl~-------------~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISD--KKVV---DWNDLR-------------DLITAVCYSP--DGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cEeecccccceEEeecCc--CeeE---eehhhh-------------hhheeEEecc--CCceEEEEEeccEEEEEEccCC
Confidence 999999999999999763 2332 111111 5699999999 6888999999999999999988
Q ss_pred EEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccC
Q 001287 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQT 290 (1107)
Q Consensus 211 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~ 290 (1107)
+...-..- ..+.+ . ....+.||++-++.-+-..|++.+.|..|+|+|..+.....
T Consensus 484 k~~~~~~I-~~~~~---------K-----------k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~---- 538 (712)
T KOG0283|consen 484 KLVSDFHI-RLHNK---------K-----------KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH---- 538 (712)
T ss_pred eEEEeeeE-eeccC---------c-----------cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh----
Confidence 77543211 00000 0 00133899999874455578899999999999996553222
Q ss_pred CCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcc
Q 001287 291 GSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 351 (1107)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~ 351 (1107)
++.-... ...++. ..+..||..+|++++|. .+.+|..
T Consensus 539 -------KfKG~~n-~~SQ~~---------Asfs~Dgk~IVs~seDs-------~VYiW~~ 575 (712)
T KOG0283|consen 539 -------KFKGFRN-TSSQIS---------ASFSSDGKHIVSASEDS-------WVYIWKN 575 (712)
T ss_pred -------hhccccc-CCccee---------eeEccCCCEEEEeecCc-------eEEEEeC
Confidence 1110000 011111 22667999999999887 6777754
No 99
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.9e-19 Score=190.22 Aligned_cols=195 Identities=21% Similarity=0.337 Sum_probs=156.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee---eeCCCCCCEEEEEEEeCCC-EEEEEeCCCcEEEEEcCCCee
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~---~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~vWDl~s~~~ 110 (1107)
.+.|+++.|+|...+|.||+.||.++||.+++..-. .+.-...||.+.+|.|+|. .+++++....+..||++++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 356999999999999999999999999998765322 3333467999999999998 888888899999999999977
Q ss_pred eeeec---c-CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 111 ACCLK---W-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 111 ~~~~~---~-~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
..... + +..+..|.++++++++++.+..|.|.+.- ..++.++.. ++++ +.|..++|+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh--akT~eli~s-~Kie---------------G~v~~~~fs- 353 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH--AKTKELITS-FKIE---------------GVVSDFTFS- 353 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh--hhhhhhhhe-eeec---------------cEEeeEEEe-
Confidence 65442 2 24688999999999999999999776644 444555532 5555 669999995
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCce--eEEEeecCCCCE
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI--SALCWASSSGSI 264 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--tsl~w~spdg~~ 264 (1107)
.+++.|++.+.+|.|.+||+....++..+.- ++.| +++| .+++|++
T Consensus 354 -Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D------------------------------~G~v~gts~~-~S~ng~y 401 (514)
T KOG2055|consen 354 -SDSKELLASGGTGEVYVWNLRQNSCLHRFVD------------------------------DGSVHGTSLC-ISLNGSY 401 (514)
T ss_pred -cCCcEEEEEcCCceEEEEecCCcceEEEEee------------------------------cCccceeeee-ecCCCce
Confidence 4889999999999999999999987765532 2222 4677 4699999
Q ss_pred EEEEEcCCcEEEEeCC
Q 001287 265 LAVGYIDGDILLWNTS 280 (1107)
Q Consensus 265 l~sg~~dG~I~lWd~~ 280 (1107)
||+|+..|.|.|||..
T Consensus 402 lA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 402 LATGSDSGIVNIYDGN 417 (514)
T ss_pred EEeccCcceEEEeccc
Confidence 9999999999999875
No 100
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=7.3e-19 Score=206.06 Aligned_cols=206 Identities=15% Similarity=0.147 Sum_probs=157.7
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCc--------ceeeeCCCCCCEEEEEEEeCC-CEEEEEeCCCcE
Q 001287 31 HYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEI 100 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp-~~~~LA~Gs~dg~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I 100 (1107)
..||.+.|.+++|+| ++.+||+|+.||.|+||++... ....+.+|..+|.+|+|+|++ .+|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 458999999999999 8899999999999999998542 234667899999999999975 689999999999
Q ss_pred EEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 101 QVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 101 ~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
+|||+.+++.+..+ .|...|.+++|++++.+|++|+.||.|+|||+.. ++.. +.+.+|.- ..+
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs--g~~v---~tl~~H~~-----------~~~ 214 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD--GTIV---SSVEAHAS-----------AKS 214 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC--CcEE---EEEecCCC-----------Ccc
Confidence 99999999887776 5788999999999999999999999999999864 3443 23555530 224
Q ss_pred EEEEcccCCCCCEEEEEE----CCCeEEEEEccCCE-EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeE
Q 001287 180 VGVLPHPNSSGNRVLIAY----ENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~----~dg~V~vwdl~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vts 254 (1107)
..+.|.|. +..+++++ .|+.|++||++... ....... . ....+..
T Consensus 215 ~~~~w~~~--~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~---------d-------------------~~~~~~~ 264 (493)
T PTZ00421 215 QRCLWAKR--KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL---------D-------------------QSSALFI 264 (493)
T ss_pred eEEEEcCC--CCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc---------C-------------------CCCceEE
Confidence 56778774 44455443 47899999998643 2222111 0 0122333
Q ss_pred EEeecCCCCEEEEEEc-CCcEEEEeCCCCC
Q 001287 255 LCWASSSGSILAVGYI-DGDILLWNTSTTA 283 (1107)
Q Consensus 255 l~w~spdg~~l~sg~~-dG~I~lWd~~~~~ 283 (1107)
.. +++++..|++|+. ||.|++||+.++.
T Consensus 265 ~~-~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 265 PF-FDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EE-EcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 34 4599999998884 9999999998663
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.5e-18 Score=174.60 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=160.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-CCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC--CCcEEEEEcCCCee
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITN--DNEIQVWSLESRSL 110 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~--d~~I~vWDl~s~~~ 110 (1107)
..+.|+++.|+++|.+|++++.|..|+|||. .+..+..+..+.-.|..++|......++.++. |.+|+..++.+.++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 4678999999999999999999999999998 55566677777788999999988888888887 89999999999999
Q ss_pred eeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 111 ~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
+..+ +|...|+.++++|.++.+++++.|++|++||+......-. +.. ..-..++|.| +
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-----l~~--------------~~~pi~AfDp--~ 151 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-----LNL--------------SGRPIAAFDP--E 151 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----Eec--------------CCCcceeECC--C
Confidence 9887 7999999999999999999999999999999985322111 221 2234567877 7
Q ss_pred CCEEEEEECCCeEEEEEccCCEE--EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 190 GNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
|-.++++.....|++||++.-.. ...+.. ......+.+.+-| ||||+.|+.
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i--------------------------~~~~~~ew~~l~F-S~dGK~iLl 204 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSI--------------------------TDNDEAEWTDLEF-SPDGKSILL 204 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEcc--------------------------CCCCccceeeeEE-cCCCCEEEE
Confidence 88888888888999999887421 111111 0012567888886 599999999
Q ss_pred EEcCCcEEEEeCCCC
Q 001287 268 GYIDGDILLWNTSTT 282 (1107)
Q Consensus 268 g~~dG~I~lWd~~~~ 282 (1107)
+...+.+++.|.-++
T Consensus 205 sT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 205 STNASFIYLLDAFDG 219 (311)
T ss_pred EeCCCcEEEEEccCC
Confidence 999999999887654
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=1e-18 Score=185.39 Aligned_cols=284 Identities=16% Similarity=0.202 Sum_probs=221.4
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeec
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 156 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~ 156 (1107)
.++.+...+....+++++.|.++.++|..+.+++..+ +|...|+.+.++++...+++++.|-.|+||..........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~-- 298 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS-- 298 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--
Confidence 6888888887788999999999999999999998887 7888999999999999999999999999999764332211
Q ss_pred ceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCC
Q 001287 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1107)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 236 (1107)
+..|+ .+|+.+..|| .|.+|++++.||+..+.|++++..+..-.+.
T Consensus 299 ---~~~h~------------~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~----------------- 344 (506)
T KOG0289|consen 299 ---SRPHE------------EPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDE----------------- 344 (506)
T ss_pred ---ccccc------------ccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeec-----------------
Confidence 33444 8899999999 5889999999999999999999887654330
Q ss_pred ccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEee
Q 001287 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWS 316 (1107)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~ 316 (1107)
...-.++++.|+ |||..+.+|..||.|++||+.+... +.
T Consensus 345 ----------~s~v~~ts~~fH-pDgLifgtgt~d~~vkiwdlks~~~-----------~a------------------- 383 (506)
T KOG0289|consen 345 ----------TSDVEYTSAAFH-PDGLIFGTGTPDGVVKIWDLKSQTN-----------VA------------------- 383 (506)
T ss_pred ----------cccceeEEeeEc-CCceEEeccCCCceEEEEEcCCccc-----------cc-------------------
Confidence 003468999987 9999999999999999999975410 00
Q ss_pred cccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEcc
Q 001287 317 TNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTS 396 (1107)
Q Consensus 317 ~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~ 396 (1107)
T Consensus 384 -------------------------------------------------------------------------------- 383 (506)
T KOG0289|consen 384 -------------------------------------------------------------------------------- 383 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccc
Q 001287 397 PGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKW 476 (1107)
Q Consensus 397 ~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 476 (1107)
T Consensus 384 -------------------------------------------------------------------------------- 383 (506)
T KOG0289|consen 384 -------------------------------------------------------------------------------- 383 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEecc
Q 001287 477 PLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE 556 (1107)
Q Consensus 477 p~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~ 556 (1107)
-.+||.+++..+.|+.+|.+++|+..|+.|++||+..-..-..+. + .....|.++.|...|.+|++++.
T Consensus 384 -~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~---------l-~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 384 -KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ---------L-DEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred -cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee---------c-cccccceeEEEcCCCCeEEeecc
Confidence 001122233344677888899999999999999998665332221 1 12236999999999999999966
Q ss_pred CceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001287 557 FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 557 dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~ 632 (1107)
| |+||.+.... +.+.++..+..|.+..+++.|....+++++|+.|..++++.+
T Consensus 453 ~--l~Vy~~~k~~---------------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 453 D--LQVYICKKKT---------------------KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred e--eEEEEEeccc---------------------ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 5 5555555431 224567777889999999999999999999999999888754
No 103
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.1e-19 Score=191.63 Aligned_cols=139 Identities=15% Similarity=0.212 Sum_probs=106.3
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCcccee
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~ 576 (1107)
.++|++.|.++|+||++.+.+.....++ .++.+++.+|-.+.+.+|+.+|.|.+.++...+.+...
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLlti~fp------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~-- 255 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLLTITFP------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG-- 255 (476)
T ss_pred eEEEecCCceEEEEEeccceeeEEEecC------------CcceeEEEcccccEEEecCCcceEEeeehhcCCccccc--
Confidence 8999999999999999999866333222 47999999999999999999999999888765421000
Q ss_pred eccCcCcceecccCCcceeEEEEeecCc--CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEE
Q 001287 577 VLETKSEVHALPEGKISLCRAVFSLVNS--PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1107)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~--~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l 654 (1107)
-.......++ .-+..+.+|.+ +||||++|-||.+|++|+.||.|+|||+.+..++ +++....++|+.|
T Consensus 256 ------v~~k~~~~~~-t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i---Rtl~~~kgpVtnL 325 (476)
T KOG0646|consen 256 ------VNQKGRHEEN-TQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI---RTLQTSKGPVTNL 325 (476)
T ss_pred ------cccccccccc-ceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH---HHHhhhcccccee
Confidence 0000000001 12456788988 9999999999999999999999999999998887 4444477899999
Q ss_pred EEeec
Q 001287 655 TWTEF 659 (1107)
Q Consensus 655 ~fs~~ 659 (1107)
.+.+.
T Consensus 326 ~i~~~ 330 (476)
T KOG0646|consen 326 QINPL 330 (476)
T ss_pred Eeecc
Confidence 98743
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.1e-19 Score=198.02 Aligned_cols=212 Identities=15% Similarity=0.205 Sum_probs=164.3
Q ss_pred cCCCCCeE---EEEEc-CCCCEEEEEECCCcEEEEeCCCcc-------eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcE
Q 001287 32 YGIPATAS---ILAFD-HIQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1107)
Q Consensus 32 ~G~~~~i~---~lafs-p~~~~LA~Gs~dg~I~iw~~~~~~-------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I 100 (1107)
+.+-..+. ++..| |.+++|.+|+.||.|++|+.+... ...+..|..+|..+....++.-|+|+|.|-+|
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 33344455 56666 566789999999999999984322 23455699999999999999999999999999
Q ss_pred EEEEcCCCe--eeeee-ccCCCeEEEEE-ecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCC
Q 001287 101 QVWSLESRS--LACCL-KWESNITAFSV-ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1107)
Q Consensus 101 ~vWDl~s~~--~~~~~-~~~~~Vt~l~~-~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1107)
++|+...+. +...+ .|..-|.|+++ .++...+++|+-|+.|++|++.....+++..--.++... ...++.
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s------l~sG~k 171 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS------LGSGPK 171 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc------CCCCCc
Confidence 999998874 33344 68899999999 777889999999999999999864333332100111111 112344
Q ss_pred CCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC-EEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEE
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1107)
.+|++++-+| .|..++.|+..+.+++||.++. ++..+.|| ...|..+
T Consensus 172 ~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGH------------------------------TdNVr~l 219 (735)
T KOG0308|consen 172 DSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH------------------------------TDNVRVL 219 (735)
T ss_pred cceeeeecCC--cceEEEecCcccceEEeccccccceeeeecc------------------------------ccceEEE
Confidence 7899999977 5788999999999999999886 55677888 6678888
Q ss_pred EeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 256 CWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 256 ~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
.- ++||..++++++||+|++||+...
T Consensus 220 l~-~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 220 LV-NDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred EE-cCCCCeEeecCCCceEEeeecccc
Confidence 84 599999999999999999999754
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=177.88 Aligned_cols=171 Identities=13% Similarity=0.182 Sum_probs=115.0
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee-----eeeeccCCCeEEEEEecCCCEEEEEcCC-CcEEEE
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL-----ACCLKWESNITAFSVISGSHFMYIGDEN-GLMSVI 144 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~-----~~~~~~~~~Vt~l~~~~~~~~l~~g~~d-g~V~vw 144 (1107)
.+.+|...|++++|+.||.+|++++.|+.|++||+..-.. +..--.-+..|.+.|.|+.+-+++.... .+++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 5678999999999999999999999999999999876321 1111112367899999999877766654 467788
Q ss_pred EeecC-CCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccc
Q 001287 145 KYDAD-EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQL 223 (1107)
Q Consensus 145 ~~d~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~ 223 (1107)
.++.. +|.....-..+..++ +++.+...+..+-. .+.++++++++.|..|.+|+++ ++.+.....+.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~------f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--- 228 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLE------FERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--- 228 (420)
T ss_pred EeeecccCCCCcccccccccc------cchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccc---
Confidence 77652 233322111122222 23333344555444 5578889999999999999999 55544332110
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
. .-+-++ .||+|++|++++-.-.+++|.+-
T Consensus 229 -------------------------~-~n~~aa-vSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 229 -------------------------S-SNYDAA-VSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred -------------------------c-ccccee-eCCCCcEEEEecCCCCceEEEEE
Confidence 0 111122 37999999999999999999863
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-19 Score=201.22 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=123.7
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~ 569 (1107)
+..+.+.+|++|+..+-+|+||..+..-. +.+.+|..-|.+|-.+.||+.+++++.||+|++|++...
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~ki-----------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ- 245 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKI-----------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ- 245 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccce-----------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-
Confidence 45556668999999999999999887744 568899999999999999999999999999999999876
Q ss_pred CCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCC
Q 001287 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1107)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~ 649 (1107)
+|+.++..|...|+++..+|+-.++.+|+.||.|..=|++++.... .+..-..
T Consensus 246 ------------------------rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~t---lick~da 298 (735)
T KOG0308|consen 246 ------------------------RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKST---LICKEDA 298 (735)
T ss_pred ------------------------ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhhe---EeecCCC
Confidence 5899999999999999999999999999999999999998853221 1122345
Q ss_pred ceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
||..+..... ++-+.+++.|++|.-|-.+
T Consensus 299 Pv~~l~~~~~----------------------~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 299 PVLKLHLHEH----------------------DNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred chhhhhhccc----------------------cCCceeeeccccceecCCc
Confidence 6666665522 2225899999999999865
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.1e-18 Score=175.31 Aligned_cols=179 Identities=17% Similarity=0.264 Sum_probs=137.9
Q ss_pred EEEEEECCCcEEEEeCCCcc-------------eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-
Q 001287 49 LLAIATLDGRIKVIGGDGIE-------------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL- 114 (1107)
Q Consensus 49 ~LA~Gs~dg~I~iw~~~~~~-------------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~- 114 (1107)
.+++|+....|.=+.++-.. ......|.+++++|+.+ +.+++|+|.|-+|+|||..++..+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 36778877776666552211 12345699999999886 689999999999999999999766554
Q ss_pred ccCCCeEEEEEecCCC--EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCE
Q 001287 115 KWESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~--~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1107)
.|.+.|+++.|.+... +|++|+.||.|.+|+... -.+.. .+.+|. +.|+.++.|| .+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~---slK~H~------------~~Vt~lsiHP--S~KL 141 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLK---SLKAHK------------GQVTDLSIHP--SGKL 141 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--eEEee---eecccc------------cccceeEecC--CCce
Confidence 7899999999998765 999999999999999764 23332 256665 6799999999 4887
Q ss_pred EEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC
Q 001287 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1107)
Q Consensus 193 ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG 272 (1107)
-++.+.|+.+++||+-.++......- ...-+.+.|. |.|.+++.+..++
T Consensus 142 ALsVg~D~~lr~WNLV~Gr~a~v~~L------------------------------~~~at~v~w~-~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 142 ALSVGGDQVLRTWNLVRGRVAFVLNL------------------------------KNKATLVSWS-PQGDHFVVSGRNK 190 (362)
T ss_pred EEEEcCCceeeeehhhcCccceeecc------------------------------CCcceeeEEc-CCCCEEEEEeccE
Confidence 88999999999999999877554322 2233448886 9999888887765
Q ss_pred cEEEEeCC
Q 001287 273 DILLWNTS 280 (1107)
Q Consensus 273 ~I~lWd~~ 280 (1107)
|-+|.+.
T Consensus 191 -i~i~q~d 197 (362)
T KOG0294|consen 191 -IDIYQLD 197 (362)
T ss_pred -EEEEecc
Confidence 6777665
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.5e-18 Score=173.20 Aligned_cols=287 Identities=13% Similarity=0.135 Sum_probs=209.3
Q ss_pred CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec-cCCCeEEEEEecCCCEEEEEcC--CCcEEEEEeecCCC
Q 001287 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEG 151 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~--dg~V~vw~~d~~~~ 151 (1107)
-.+.|.+|.|+.+|.+|++++.|..|+++|..+++.++++. ..-.|..+.|-.....++-++. |.+|+..++.. .
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d--N 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD--N 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec--C
Confidence 46789999999999999999999999999999999988874 4456777778777777776665 77888877654 4
Q ss_pred ceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCC
Q 001287 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1107)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~ 231 (1107)
+.++. +++|. ..|+++.-+|. ++.+++++.|++|++||++..++.-+...
T Consensus 91 kylRY---F~GH~------------~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------- 140 (311)
T KOG1446|consen 91 KYLRY---FPGHK------------KRVNSLSVSPK--DDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------- 140 (311)
T ss_pred ceEEE---cCCCC------------ceEEEEEecCC--CCeEEecccCCeEEeeEecCCCCceEEec-------------
Confidence 55543 88988 88999999996 35699999999999999997765433311
Q ss_pred CCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceE
Q 001287 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVI 311 (1107)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 311 (1107)
..-..++| .|.|-.+|++...+.|++||++... +.|..
T Consensus 141 ------------------~~~pi~Af-Dp~GLifA~~~~~~~IkLyD~Rs~d-----------------------kgPF~ 178 (311)
T KOG1446|consen 141 ------------------SGRPIAAF-DPEGLIFALANGSELIKLYDLRSFD-----------------------KGPFT 178 (311)
T ss_pred ------------------CCCcceeE-CCCCcEEEEecCCCeEEEEEecccC-----------------------CCCce
Confidence 01112344 4999999999988899999996431 11111
Q ss_pred EEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceE
Q 001287 312 VLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1107)
Q Consensus 312 ~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l 391 (1107)
.+ .+..
T Consensus 179 tf---------------------------------~i~~----------------------------------------- 184 (311)
T KOG1446|consen 179 TF---------------------------------SITD----------------------------------------- 184 (311)
T ss_pred eE---------------------------------ccCC-----------------------------------------
Confidence 11 0000
Q ss_pred EEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCcc
Q 001287 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1107)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1107)
+.
T Consensus 185 ------~~------------------------------------------------------------------------ 186 (311)
T KOG1446|consen 185 ------ND------------------------------------------------------------------------ 186 (311)
T ss_pred ------CC------------------------------------------------------------------------
Confidence 00
Q ss_pred CCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeE
Q 001287 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL 551 (1107)
Q Consensus 472 ~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~L 551 (1107)
..+..-+.|++||+.|+.+...+.+.+.|+-.|.+...+....+... .+ -...|+||++++
T Consensus 187 -----------~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~-------~~-~~a~ftPds~Fv 247 (311)
T KOG1446|consen 187 -----------EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN-------LP-LSATFTPDSKFV 247 (311)
T ss_pred -----------ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC-------cc-eeEEECCCCcEE
Confidence 00001226889999999999999999999999986644433322211 12 456799999999
Q ss_pred EEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEee-cCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001287 552 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVL 630 (1107)
Q Consensus 552 asg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-h~~~Vt~la~sp~~~~la~Gs~dg~V~iw 630 (1107)
++|+.||+|.+|++.+. ..+..+.+ +.++++++.|+|....+|+++. .+.+|
T Consensus 248 l~gs~dg~i~vw~~~tg-------------------------~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETG-------------------------KKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred EEecCCCcEEEEEcCCC-------------------------cEeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence 99999999999999765 23566666 7899999999999888887765 45666
Q ss_pred EcC
Q 001287 631 DMN 633 (1107)
Q Consensus 631 d~~ 633 (1107)
=..
T Consensus 301 ~p~ 303 (311)
T KOG1446|consen 301 LPD 303 (311)
T ss_pred ecc
Confidence 443
No 109
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=4.3e-18 Score=200.14 Aligned_cols=178 Identities=13% Similarity=0.149 Sum_probs=136.5
Q ss_pred EECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeC-CCEEEEEeCCCcEEEEEcCCCe--------eeeee-ccCCCeE
Q 001287 53 ATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLESRS--------LACCL-KWESNIT 121 (1107)
Q Consensus 53 Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWDl~s~~--------~~~~~-~~~~~Vt 121 (1107)
|+.+|.|++|+.... ....+.+|.++|.+++|+|+ +.+|+|++.|++|+|||+.++. .+..+ .|...|+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999987544 34467789999999999996 7899999999999999998642 12223 6788999
Q ss_pred EEEEecCCCE-EEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCC
Q 001287 122 AFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1107)
Q Consensus 122 ~l~~~~~~~~-l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1107)
+++|+|++.. |++|+.||+|+||++... ... +.+. +. ..|.+++|+| +|.+|++++.|+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg--~~~---~~i~-~~------------~~V~Slswsp--dG~lLat~s~D~ 189 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENE--KRA---FQIN-MP------------KKLSSLKWNI--KGNLLSGTCVGK 189 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCC--cEE---EEEe-cC------------CcEEEEEECC--CCCEEEEEecCC
Confidence 9999998875 568899999999998753 222 2232 22 5699999988 688899999999
Q ss_pred eEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCcee-----EEEeecCCCCEEEEEEcCC--
Q 001287 201 LVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS-----ALCWASSSGSILAVGYIDG-- 272 (1107)
Q Consensus 201 ~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt-----sl~w~spdg~~l~sg~~dG-- 272 (1107)
.|+|||+++++.+. +.+| .+.+. ...| ++++.+|++++.|+
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH------------------------------~g~~~s~~v~~~~f-s~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIH------------------------------DGGKNTKNIWIDGL-GGDDNYILSTGFSKNN 238 (568)
T ss_pred EEEEEECCCCcEEEEEecc------------------------------cCCceeEEEEeeeE-cCCCCEEEEEEcCCCC
Confidence 99999999987654 4455 22222 2223 47889999988774
Q ss_pred --cEEEEeCCC
Q 001287 273 --DILLWNTST 281 (1107)
Q Consensus 273 --~I~lWd~~~ 281 (1107)
.|++||+..
T Consensus 239 ~R~VkLWDlr~ 249 (568)
T PTZ00420 239 MREMKLWDLKN 249 (568)
T ss_pred ccEEEEEECCC
Confidence 799999864
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.4e-18 Score=175.09 Aligned_cols=331 Identities=13% Similarity=0.200 Sum_probs=234.1
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecC
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~ 149 (1107)
...+|...|..++....+..+.+++.|.+-++|.++++.++..+ +|.+.|.++.|++.+.++++++.|++-.||.+...
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~ 222 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN 222 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence 45679999999999888889999999999999999999888777 79999999999999999999999999999997642
Q ss_pred CCceeecceeecccccccccCCCCCCCCCeEEE-EcccCCCCCEEEEEECCC-eEEEEEccCCEEEEEeCCccccccccc
Q 001287 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGV-LPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGGKDLQLKDGV 227 (1107)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v-~f~P~~~~~~ll~~~~dg-~V~vwdl~~~~~~~~~g~~~~~~~~~~ 227 (1107)
+.+|....... .+..+.+.+- .-.|..++. -..|| +|++ .+..+.||
T Consensus 223 --------~~vP~~~a~~~----hSsEeE~e~sDe~~~d~d~~----~~sD~~tiRv------Pl~~ltgH--------- 271 (481)
T KOG0300|consen 223 --------WEVPSNNAPSD----HSSEEEEEHSDEHNRDTDSS----EKSDGHTIRV------PLMRLTGH--------- 271 (481)
T ss_pred --------CcCCCCCCCCC----CCchhhhhcccccccccccc----cccCCceeee------eeeeeecc---------
Confidence 11221100000 0000001000 000100110 01122 2221 12234455
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCc
Q 001287 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 307 (1107)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 307 (1107)
...|.+..|. ..|+.+++++-|.+..+||+++++...
T Consensus 272 ---------------------~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~--------------------- 308 (481)
T KOG0300|consen 272 ---------------------RAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVN--------------------- 308 (481)
T ss_pred ---------------------ccceEehhhh-cCcceeeeeeccccceeeeeccCceec---------------------
Confidence 6778888898 789999999999999999998662110
Q ss_pred cceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCC
Q 001287 308 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH 387 (1107)
Q Consensus 308 ~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~ 387 (1107)
T Consensus 309 -------------------------------------------------------------------------------- 308 (481)
T KOG0300|consen 309 -------------------------------------------------------------------------------- 308 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCC
Q 001287 388 KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS 467 (1107)
Q Consensus 388 ~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1107)
T Consensus 309 -------------------------------------------------------------------------------- 308 (481)
T KOG0300|consen 309 -------------------------------------------------------------------------------- 308 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeC
Q 001287 468 HTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI 547 (1107)
Q Consensus 468 ~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd 547 (1107)
+++| |..+..-+..+|..++++|++.|.+.|+||+.... ... .-+.+|...|++..|..|
T Consensus 309 ---------~LtG-Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI-~sV---------~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 309 ---------ILTG-HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-QSV---------AVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred ---------cccC-cchhccccccCCcceEEEEeccCceeEeccchhhc-cee---------eeecccccceeEEEEecC
Confidence 0111 11111222567788899999999999999998332 211 126799999999999987
Q ss_pred CCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeE
Q 001287 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1107)
Q Consensus 548 ~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V 627 (1107)
.+ +++|++|.+|+||++..... ++.++ ...+++.-+++|-.+..||.--++..|
T Consensus 369 d~-vVSgSDDrTvKvWdLrNMRs------------------------plATI-RtdS~~NRvavs~g~~iIAiPhDNRqv 422 (481)
T KOG0300|consen 369 DR-VVSGSDDRTVKVWDLRNMRS------------------------PLATI-RTDSPANRVAVSKGHPIIAIPHDNRQV 422 (481)
T ss_pred Cc-eeecCCCceEEEeeeccccC------------------------cceee-ecCCccceeEeecCCceEEeccCCceE
Confidence 75 57899999999999987632 23333 456789999999999999999999999
Q ss_pred EEEEcCCCeEEEEeec-CCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 628 AVLDMNLLSVLFFTDD-ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 628 ~iwd~~~~~~~~~~~~-~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
++||+.+.++-...+. -.+|..-|.+++|... +.-.-|++++-|..+.-|...+
T Consensus 423 RlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee--------------------hp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 423 RLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE--------------------HPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred EEEecCCCccccCCcccccccceeeeeeecccc--------------------CcccccccccccceeeeeEecc
Confidence 9999999877522211 1369999999999843 2235599999999999998754
No 111
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=1.8e-18 Score=203.31 Aligned_cols=207 Identities=13% Similarity=0.117 Sum_probs=157.4
Q ss_pred eeecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCcc---------eeeeCCCCCCEEEEEEEeCCCE-EEEEeCC
Q 001287 29 AVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIE---------GLLISPSQLPYKNLEFLQNQGF-LISITND 97 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~~---------~~~~~~h~~~V~~l~fs~d~~~-L~S~s~d 97 (1107)
....||.+.|.+++|+|+ +.+||+|+.||.|+||++.... ...+.+|...|.+++|+|++.. |++++.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 344689999999999997 7899999999999999985321 1245689999999999998775 5788999
Q ss_pred CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCC
Q 001287 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1107)
Q Consensus 98 ~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1107)
++|+|||+.+++.+..+.+...|++++|++++.+|++++.|+.|+||++.. +.... .+.+|. +
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs--g~~i~---tl~gH~------------g 210 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK--QEIAS---SFHIHD------------G 210 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC--CcEEE---EEeccc------------C
Confidence 999999999998877777778899999999999999999999999999864 44442 356664 3
Q ss_pred Ce-----EEEEcccCCCCCEEEEEECCC----eEEEEEccC-CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 178 PV-----VGVLPHPNSSGNRVLIAYENA----LVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 178 ~V-----~~v~f~P~~~~~~ll~~~~dg----~V~vwdl~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
.+ ....|+| ++.++++++.++ .|+|||++. ...+....+..
T Consensus 211 ~~~s~~v~~~~fs~--d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--------------------------- 261 (568)
T PTZ00420 211 GKNTKNIWIDGLGG--DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--------------------------- 261 (568)
T ss_pred CceeEEEEeeeEcC--CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---------------------------
Confidence 32 2233445 566788877664 799999985 44443332200
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
....+. -.|..++|.++++|..|++|++|++..+
T Consensus 262 ~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 262 ASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CccceE-EeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 012222 2345567999999999999999999754
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=3.7e-18 Score=173.80 Aligned_cols=273 Identities=17% Similarity=0.257 Sum_probs=194.8
Q ss_pred cCCCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 116 WESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 116 ~~~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
....|.+++|+|. ..+++.|+.||+||+|++... |.+.. -....|. ++|.+++| +++|..++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~--ka~~~~~------------~PvL~v~W--sddgskVf 88 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVP--KAQQSHD------------GPVLDVCW--SDDGSKVF 88 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecC-Ccccc--hhhhccC------------CCeEEEEE--ccCCceEE
Confidence 4568999999994 556669999999999999864 33331 1122222 89999999 55899999
Q ss_pred EEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC--EEEEEEcCC
Q 001287 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS--ILAVGYIDG 272 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~--~l~sg~~dG 272 (1107)
+|+.|+.+++||+.++++..+-.| .++|.++.|. +... .|++|+-|.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~~v~~H------------------------------d~pvkt~~wv-~~~~~~cl~TGSWDK 137 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVSQVAAH------------------------------DAPVKTCHWV-PGMNYQCLVTGSWDK 137 (347)
T ss_pred eeccCCceEEEEccCCCeeeeeec------------------------------ccceeEEEEe-cCCCcceeEeccccc
Confidence 999999999999999999888777 8899999998 4444 899999999
Q ss_pred cEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccc
Q 001287 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1107)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1107)
+|++||.+.. .++..+.+.
T Consensus 138 TlKfWD~R~~-----------~pv~t~~LP-------------------------------------------------- 156 (347)
T KOG0647|consen 138 TLKFWDTRSS-----------NPVATLQLP-------------------------------------------------- 156 (347)
T ss_pred ceeecccCCC-----------Ceeeeeecc--------------------------------------------------
Confidence 9999999743 223222221
Q ss_pred cccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCccccc
Q 001287 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1107)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1107)
+++|.-|.
T Consensus 157 ---------------------------------------------eRvYa~Dv--------------------------- 164 (347)
T KOG0647|consen 157 ---------------------------------------------ERVYAADV--------------------------- 164 (347)
T ss_pred ---------------------------------------------ceeeehhc---------------------------
Confidence 22222110
Q ss_pred CCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeC
Q 001287 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1107)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~ 512 (1107)
-..+++.+..++.|.++++
T Consensus 165 -------------------------------------------------------------~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 165 -------------------------------------------------------------LYPMAVVATAERHIAVYNL 183 (347)
T ss_pred -------------------------------------------------------------cCceeEEEecCCcEEEEEc
Confidence 0015666777888889988
Q ss_pred CCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCc
Q 001287 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1107)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 592 (1107)
+.+.-. ++ ..-..-.-.+.||+.-.|....+.|+-.|.|.|..++......++.|.
T Consensus 184 ~n~~te----~k-----~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk--------------- 239 (347)
T KOG0647|consen 184 ENPPTE----FK-----RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK--------------- 239 (347)
T ss_pred CCCcch----hh-----hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE---------------
Confidence 766522 00 001112236899999999988899999999999999875323332222
Q ss_pred ceeEEEEe---ecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeec
Q 001287 593 SLCRAVFS---LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEF 659 (1107)
Q Consensus 593 ~~~~~~~~---~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~ 659 (1107)
|-..-. ..--+|.+++|+|....|++.+.||++.+||-....-+ .....|..+|++..|...
T Consensus 240 --CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL---k~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 240 --CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL---KTSETHPQPITCCSFNRN 304 (347)
T ss_pred --EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh---hccCcCCCccceeEecCC
Confidence 111100 01125889999999999999999999999998876655 344569999999999943
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.5e-17 Score=161.75 Aligned_cols=303 Identities=16% Similarity=0.203 Sum_probs=217.2
Q ss_pred ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC------CCe--------eee--eeccCCCeEEEEEecCCCE
Q 001287 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE------SRS--------LAC--CLKWESNITAFSVISGSHF 131 (1107)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~------s~~--------~~~--~~~~~~~Vt~l~~~~~~~~ 131 (1107)
+.+...+-...|++++|.|+|+..+.++...+++|--.. .+. +++ ...|.+.|.|.+|+|++.+
T Consensus 24 ~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred EEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 344556667789999999999999999999998876432 211 111 1246789999999999999
Q ss_pred EEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc--cCCCCCEEEEEECCC--eEEEEEc
Q 001287 132 MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH--PNSSGNRVLIAYENA--LVILWDV 207 (1107)
Q Consensus 132 l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~--P~~~~~~ll~~~~dg--~V~vwdl 207 (1107)
+++|+.|.+|++..++.++.........+.-|. +.|..++|- |...+. +++....| .|.+-|-
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhd------------gtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHD------------GTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDC 170 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecC------------CceeeeEEecCCCcCce-EEEecCCCcceEEEeec
Confidence 999999999999999876655543222333333 779999984 443344 55444444 5555555
Q ss_pred cCCEEE-EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCC
Q 001287 208 SEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1107)
Q Consensus 208 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~ 286 (1107)
..++.. .+.|| .+.|.++- +=+|.++++|+.|.+|++||+.-..
T Consensus 171 ~~g~~~~a~sgh------------------------------tghilaly--swn~~m~~sgsqdktirfwdlrv~~--- 215 (350)
T KOG0641|consen 171 GRGQGFHALSGH------------------------------TGHILALY--SWNGAMFASGSQDKTIRFWDLRVNS--- 215 (350)
T ss_pred CCCCcceeecCC------------------------------cccEEEEE--EecCcEEEccCCCceEEEEeeeccc---
Confidence 555443 34555 55666665 2358899999999999999986320
Q ss_pred CccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeec
Q 001287 287 GQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT 366 (1107)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~ 366 (1107)
+ + .++.-.+.
T Consensus 216 ------~--v-----------------------------------------------~~l~~~~~--------------- 225 (350)
T KOG0641|consen 216 ------C--V-----------------------------------------------NTLDNDFH--------------- 225 (350)
T ss_pred ------e--e-----------------------------------------------eeccCccc---------------
Confidence 0 0 00000000
Q ss_pred CCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEecc
Q 001287 367 LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLP 446 (1107)
Q Consensus 367 ~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~ 446 (1107)
T Consensus 226 -------------------------------------------------------------------------------- 225 (350)
T KOG0641|consen 226 -------------------------------------------------------------------------------- 225 (350)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchhhhHHHhhccccCCCCccCCccccccCC-CCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeecc
Q 001287 447 FGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGG-VPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDA 525 (1107)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg-~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~ 525 (1107)
.|| ..+.+..+++.|.+++|++|+.|.+.-+||+.++.+.
T Consensus 226 --------------------------------~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i------- 266 (350)
T KOG0641|consen 226 --------------------------------DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI------- 266 (350)
T ss_pred --------------------------------CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee-------
Confidence 000 0001112356788889999999999999999999866
Q ss_pred ceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCC-CCccceeeccCcCcceecccCCcceeEEEEeecCc
Q 001287 526 EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL-DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS 604 (1107)
Q Consensus 526 ~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~ 604 (1107)
..+..|...|.|+.|||...+|.+++.|..|++-++...- .+ .++.+...|..
T Consensus 267 ----q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e----------------------l~~~vv~ehkd 320 (350)
T KOG0641|consen 267 ----QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE----------------------LPIMVVAEHKD 320 (350)
T ss_pred ----eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc----------------------CceEEEEeccC
Confidence 4577899999999999999999999999999999987652 11 23556678999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001287 605 PVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1107)
Q Consensus 605 ~Vt~la~sp~~~~la~Gs~dg~V~iwd~~ 633 (1107)
.+..+.|+|..--+.+.+.|.++.+|-+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999998888999999999999765
No 114
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=4.4e-18 Score=169.83 Aligned_cols=275 Identities=15% Similarity=0.178 Sum_probs=206.1
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee---ccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEee
Q 001287 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGS-HFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~---~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d 147 (1107)
..+|.+.|.+++|.-+|.+|++++.|+++.||+++..+.+... +|.+.|-.++++|.. +.+++++.|.+|++|+..
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 4568889999999999999999999999999999988766554 677789999998764 789999999999999987
Q ss_pred cCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccc
Q 001287 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGV 227 (1107)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~ 227 (1107)
. ++.... +... ..=.-+.|+| +|.+++.+..|..|...|.++.++......
T Consensus 96 ~--~k~~~~---i~~~-------------~eni~i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~--------- 146 (313)
T KOG1407|consen 96 S--GKCTAR---IETK-------------GENINITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF--------- 146 (313)
T ss_pred c--CcEEEE---eecc-------------CcceEEEEcC--CCCEEEEecCcccEEEEEecccceeehhcc---------
Confidence 5 344321 3221 2345678888 688899999999999999999887655433
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCc
Q 001287 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 307 (1107)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 307 (1107)
...+.-++|. -++.+++.-...|.|.|-.....+ |+.
T Consensus 147 ---------------------~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsLk-----------pv~---------- 183 (313)
T KOG1407|consen 147 ---------------------KFEVNEISWN-NSNDLFFLTNGLGCVEILSYPSLK-----------PVQ---------- 183 (313)
T ss_pred ---------------------cceeeeeeec-CCCCEEEEecCCceEEEEeccccc-----------ccc----------
Confidence 4566778886 555555544445666665443210 000
Q ss_pred cceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCC
Q 001287 308 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH 387 (1107)
Q Consensus 308 ~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~ 387 (1107)
.+.
T Consensus 184 -----------------------------------------------------------------si~------------ 186 (313)
T KOG1407|consen 184 -----------------------------------------------------------------SIK------------ 186 (313)
T ss_pred -----------------------------------------------------------------ccc------------
Confidence 000
Q ss_pred cceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCC
Q 001287 388 KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS 467 (1107)
Q Consensus 388 ~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1107)
T Consensus 187 -------------------------------------------------------------------------------- 186 (313)
T KOG1407|consen 187 -------------------------------------------------------------------------------- 186 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeC
Q 001287 468 HTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI 547 (1107)
Q Consensus 468 ~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd 547 (1107)
.|+...-++.++|+|+++|+|+.|..+-+||++.-.|. ..+..+.-+|..|.||.|
T Consensus 187 -------------AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~-----------R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 187 -------------AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE-----------RCISRLDWPVRTLSFSHD 242 (313)
T ss_pred -------------cCCcceEEEEECCCCceEeeccccceeeccChhHhhhh-----------eeeccccCceEEEEeccC
Confidence 01111223478899999999999999999999876655 335667789999999999
Q ss_pred CCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCC
Q 001287 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1107)
Q Consensus 548 ~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg 625 (1107)
|++||+|+.|--|-|....++.. .--..+.++-..++|+|...+||-+.+|.
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~--------------------------~~eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDR--------------------------VWEIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cceeeccCccceEEeEecccCCe--------------------------EEEeeccCCceeEEecCCCceeeEEecCC
Confidence 99999999999999998887632 11135788999999999999999887653
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.2e-18 Score=176.44 Aligned_cols=158 Identities=15% Similarity=0.222 Sum_probs=129.1
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~ 150 (1107)
+..+-+..|+.|.|+|.+..|+.++.||+++++|+....+...+.+..++.+++|.+ ...+++|+.||.|+.+|+....
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 344556789999999998999999999999999999998888889999999999986 5688999999999999988643
Q ss_pred CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCC
Q 001287 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1107)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~ 230 (1107)
... +..|. .+|.||.+.+. .+ .+++|+-|++|++||.........+..
T Consensus 87 ~~~------igth~------------~~i~ci~~~~~-~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~------------ 134 (323)
T KOG1036|consen 87 EDQ------IGTHD------------EGIRCIEYSYE-VG-CVISGSWDKTIKFWDPRNKVVVGTFDQ------------ 134 (323)
T ss_pred cee------eccCC------------CceEEEEeecc-CC-eEEEcccCccEEEEecccccccccccc------------
Confidence 222 55666 88999999874 33 499999999999999987443322211
Q ss_pred CCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
.+.|.|+. -.|+.|++|+.|..+.+||+.+.
T Consensus 135 ------------------~kkVy~~~---v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 135 ------------------GKKVYCMD---VSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred ------------------CceEEEEe---ccCCEEEEeecCceEEEEEcccc
Confidence 45677776 35889999999999999999865
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.7e-18 Score=176.15 Aligned_cols=214 Identities=14% Similarity=0.261 Sum_probs=175.5
Q ss_pred Ccccccccceeeeec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce-eeeCCCCCCEEEEEEEeCCCEEEEEe
Q 001287 18 SLTAADLNLRIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISIT 95 (1107)
Q Consensus 18 ~l~~~~~~~~~~~~~-G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s 95 (1107)
..+...+..+++..| ||..+|--++.+..+.+|++++.|.+-+||.+....+ ..-.+|.+.|.++.|++.+.++++++
T Consensus 130 sFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaS 209 (481)
T KOG0300|consen 130 SFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTAS 209 (481)
T ss_pred eecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEcc
Confidence 444555677888876 8999999999999999999999999999999966554 47789999999999999999999999
Q ss_pred CCCcEEEEEc------CCC----------------------------------eeeeee-ccCCCeEEEEEecCCCEEEE
Q 001287 96 NDNEIQVWSL------ESR----------------------------------SLACCL-KWESNITAFSVISGSHFMYI 134 (1107)
Q Consensus 96 ~d~~I~vWDl------~s~----------------------------------~~~~~~-~~~~~Vt~l~~~~~~~~l~~ 134 (1107)
.|++-.||.. .+. ..+..+ +|.+.|.+..|...++.+++
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVT 289 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeee
Confidence 9999999972 110 012222 46678889999999999999
Q ss_pred EcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC--EE
Q 001287 135 GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QI 212 (1107)
Q Consensus 135 g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~--~~ 212 (1107)
++.|.+-.+|+++. +.+++. +.+|+ ...+.++-|| ...++++++.|.+.++||+... .+
T Consensus 290 aSWDRTAnlwDVEt--ge~v~~---LtGHd------------~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV 350 (481)
T KOG0300|consen 290 ASWDRTANLWDVET--GEVVNI---LTGHD------------SELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSV 350 (481)
T ss_pred eeccccceeeeecc--Cceecc---ccCcc------------hhccccccCC--cceEEEEeccCceeEeccchhhccee
Confidence 99999999999875 677755 77877 6788888888 4667889999999999999864 23
Q ss_pred EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 213 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 213 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
..+.|| ...|+++.|. .+..+++|+.|.+|++||+.+.
T Consensus 351 ~VFQGH------------------------------tdtVTS~vF~--~dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 351 AVFQGH------------------------------TDTVTSVVFN--TDDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred eeeccc------------------------------ccceeEEEEe--cCCceeecCCCceEEEeeeccc
Confidence 345666 7789999975 5678999999999999999754
No 117
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.7e-18 Score=193.41 Aligned_cols=191 Identities=18% Similarity=0.286 Sum_probs=153.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCC-CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-c-c
Q 001287 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-K-W 116 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~-~ 116 (1107)
-+.|+ ....||+|.. ..|++|+.....+..+.. ++..|+++.|+++|.+|+.+..+|.|.|||..+.+.+..+ . |
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 35666 5778999974 579999997666543333 3889999999999999999999999999999998887777 3 7
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEE
Q 001287 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1107)
Q Consensus 117 ~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~ 196 (1107)
...|.+++|. ...+.+|+.+|.|.++++........ .+.+|. ..|+.+.|++ ++.++++|
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~------------qeVCgLkws~--d~~~lASG 319 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS----TLQGHR------------QEVCGLKWSP--DGNQLASG 319 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----hhhccc------------ceeeeeEECC--CCCeeccC
Confidence 8999999997 77899999999999998875322211 144555 7899999977 78899999
Q ss_pred ECCCeEEEEEccCCEE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE--cCCc
Q 001287 197 YENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY--IDGD 273 (1107)
Q Consensus 197 ~~dg~V~vwdl~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~--~dG~ 273 (1107)
+.|+.+.|||...... ..+.+| ...|.+++|..-....||+|+ .|+.
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H------------------------------~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEH------------------------------TAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred CCccceEeccCCCccccEEEecc------------------------------ceeeeEeeeCCCccCceEEcCCCcccE
Confidence 9999999999965544 456666 788999999633456788874 6999
Q ss_pred EEEEeCCCC
Q 001287 274 ILLWNTSTT 282 (1107)
Q Consensus 274 I~lWd~~~~ 282 (1107)
|++||..++
T Consensus 370 i~fwn~~~g 378 (484)
T KOG0305|consen 370 IKFWNTNTG 378 (484)
T ss_pred EEEEEcCCC
Confidence 999999865
No 118
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.82 E-value=3.6e-18 Score=193.65 Aligned_cols=322 Identities=19% Similarity=0.234 Sum_probs=179.5
Q ss_pred CeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCc--------cce---eec-cCcCcceeccc------CCcceeEEEE
Q 001287 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK--------NFL---FVL-ETKSEVHALPE------GKISLCRAVF 599 (1107)
Q Consensus 538 ~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~--------~~~---~~~-~~~~~~~~~~~------~~g~~~~~~~ 599 (1107)
.|+++.|+++...|++|...|.|.||+|..+.... +.. +.. +..+++.++.. .+||.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 69999999999999999999999999998764332 001 111 22344444443 4589999888
Q ss_pred eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCC-----CCCCceEEEEEeecccCccccCCCCCCCC
Q 001287 600 SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-----GSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1107)
Q Consensus 600 ~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~-----~h~~~V~~l~fs~~~~~~~~~~~p~~~~~ 674 (1107)
....++|++++.|.-| ++|+|+.+|.+.|.|++++.++|+.+.-. .....|+++.|+-..+..
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~----------- 150 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG----------- 150 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT-----------
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC-----------
Confidence 8889999999998666 99999999999999999999999865533 245679999999654431
Q ss_pred CCCCCCCccEEEEEcCCceEEEEeCC--C-cceecCCC-CcccccceeeEEEEecCCCCCCccccccccccccccCCCCC
Q 001287 675 EVPVNPAEEVIIVLFKDAKISIVGGS--S-ENMISSSP-WHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPT 750 (1107)
Q Consensus 675 ~~~~~~~~~~L~s~s~Dg~v~v~d~~--~-g~~i~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1107)
..+...+|++|++.|.+.+|... . |....... ......+.++.+..++.....+. ..
T Consensus 151 ---D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a--~A-------------- 211 (395)
T PF08596_consen 151 ---DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESA--LA-------------- 211 (395)
T ss_dssp ---SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B---B---------------
T ss_pred ---CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcc--cC--------------
Confidence 11335789999999999999642 1 22211110 11233455555555532211000 00
Q ss_pred CCCCCcccCCCccccccccccccCCCCCCCcEEEEEecCeeEEEeccccccccceeeeeecCCCcceeeeeeec---CCc
Q 001287 751 PDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEK---DEK 827 (1107)
Q Consensus 751 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~~l~v~sl~~~~~g~~~~i~k~~~~~~~~~~~~~~~---~~~ 827 (1107)
.....+.+. .+...+.++++|++..+|||.+++ .+..+|..-...+|.+..|.. ..+
T Consensus 212 --------------t~~~~~~l~-~g~~i~g~vVvvSe~~irv~~~~~-----~k~~~K~~~~~~~~~~~~vv~~~~~~~ 271 (395)
T PF08596_consen 212 --------------TISAMQGLS-KGISIPGYVVVVSESDIRVFKPPK-----SKGAHKSFDDPFLCSSASVVPTISRNG 271 (395)
T ss_dssp --------------BHHHHHGGG-GT----EEEEEE-SSEEEEE-TT--------EEEEE-SS-EEEEEEEEEEEE-EEE
T ss_pred --------------chhHhhccc-cCCCcCcEEEEEcccceEEEeCCC-----CcccceeeccccccceEEEEeecccCC
Confidence 000011111 111226799999999999999998 455666552223455444431 136
Q ss_pred eeEEEEEeecCcEEEeecCCccccccccccceeeceecCccccccccc-CCcEEEEcC-ceeEEEEeecCCCc--eeccc
Q 001287 828 VCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFVNLLAGENE--FSILE 903 (1107)
Q Consensus 828 ~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Gq~~l~~~-~e~~~~s~~~~~~~--~~~~~ 903 (1107)
+.+|+|++.||.|++||||+|+.+.+.++.. ..+...++..+++ +|++++..+ .|++++++..+... .+...
T Consensus 272 ~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~----~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~~~~~~~~ 347 (395)
T PF08596_consen 272 GYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP----PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGEGRTGSSLLAP 347 (395)
T ss_dssp EEEEEEEETTSEEEEEETTT--EEEEEE-SS-------HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES-----------
T ss_pred ceEEEEEECCCcEEEEECCCchHhhcccCCC----ccccccccccEECCCCCEEEEeCcccEEEEEEEccCCccccccCC
Confidence 8999999999999999999999999987753 2234446677889 999665555 99999988876555 44556
Q ss_pred CCcceeehhhH
Q 001287 904 SSPCLHDKVLE 914 (1107)
Q Consensus 904 s~~~l~~~~~~ 914 (1107)
....||.+...
T Consensus 348 ~~d~L~np~~~ 358 (395)
T PF08596_consen 348 PTDTLYNPNLI 358 (395)
T ss_dssp ---B---TT--
T ss_pred CCCeEECCCCC
Confidence 67788988653
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.82 E-value=3.1e-18 Score=191.74 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=97.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee---eeCCCCCCEEE-EEEEe-CCCEEEEEeCCCcEEEEE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKN-LEFLQ-NQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~---~~~~h~~~V~~-l~fs~-d~~~L~S~s~d~~I~vWD 104 (1107)
...||...|..+++.+. ..++.|++||++++|...+.+.+ ...+|.+.|.. ++|.+ ++.+|++++.|..|.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 34699999999988764 47889999999999998666654 35557777766 88875 667899999999999999
Q ss_pred cCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 105 LESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 105 l~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
..+...+..+ .|+..|+|++...++. |++|+.|.+++||...
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~ 130 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG 130 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch
Confidence 9999988777 7999999999887776 9999999999999876
No 120
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.81 E-value=9e-18 Score=178.37 Aligned_cols=199 Identities=17% Similarity=0.261 Sum_probs=161.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee-ee
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA-CC 113 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~-~~ 113 (1107)
-+++++...|....+.+|+.|..+.+||.+..+.+ ++.+|.-.|+.+.|+++...+++++.|..|+||........ ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45677777777789999999999999999766655 77889999999999999999999999999999998776543 44
Q ss_pred eccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEE
Q 001287 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1107)
Q Consensus 114 ~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~l 193 (1107)
..|+++|+.+..+|.+.|++.++.||..-+-++.. +...- .-.++ ...-.+++.+||| ||..+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~--g~~lt----~vs~~---------~s~v~~ts~~fHp--DgLif 362 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS--GSQLT----VVSDE---------TSDVEYTSAAFHP--DGLIF 362 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccC--CcEEE----EEeec---------cccceeEEeeEcC--CceEE
Confidence 47999999999999999999999999765555543 22221 11111 0114589999999 89989
Q ss_pred EEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC
Q 001287 194 LIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1107)
Q Consensus 194 l~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG 272 (1107)
.+|..||.|+|||+++..... +-+| .++|+++.| +.+|-+|++++.|+
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpgh------------------------------t~~vk~i~F-sENGY~Lat~add~ 411 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGH------------------------------TGPVKAISF-SENGYWLATAADDG 411 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCC------------------------------CCceeEEEe-ccCceEEEEEecCC
Confidence 999999999999999976543 4445 889999997 59999999999999
Q ss_pred cEEEEeCCCC
Q 001287 273 DILLWNTSTT 282 (1107)
Q Consensus 273 ~I~lWd~~~~ 282 (1107)
.|++||++..
T Consensus 412 ~V~lwDLRKl 421 (506)
T KOG0289|consen 412 SVKLWDLRKL 421 (506)
T ss_pred eEEEEEehhh
Confidence 9999999643
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.7e-17 Score=158.33 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=119.3
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecC---CCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCcc
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAG---SRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 573 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~---h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~ 573 (1107)
++++|++|.+||+||+.-..+.. ++. .++.+ .+.+|.+++..|.|++|++|-.|....+|++..+
T Consensus 196 m~~sgsqdktirfwdlrv~~~v~--~l~-----~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~----- 263 (350)
T KOG0641|consen 196 MFASGSQDKTIRFWDLRVNSCVN--TLD-----NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG----- 263 (350)
T ss_pred EEEccCCCceEEEEeeeccceee--ecc-----CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-----
Confidence 89999999999999998776541 111 11221 1358999999999999999999999999999987
Q ss_pred ceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE-EEeecCCCCCCceE
Q 001287 574 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL-FFTDDISGSSSPII 652 (1107)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~-~~~~~~~~h~~~V~ 652 (1107)
.++..|..|+..|.|+.|||...++.+|+-|..|++-|+++.-.. +..-....|...+.
T Consensus 264 --------------------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i 323 (350)
T KOG0641|consen 264 --------------------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAI 323 (350)
T ss_pred --------------------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceE
Confidence 467888999999999999999999999999999999999864211 00012234999999
Q ss_pred EEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 653 ~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
.+.|.+. +.-+++.+.|.++.+|-.
T Consensus 324 ~~rwh~~----------------------d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 324 QCRWHPQ----------------------DFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEecCc----------------------cceeeeccCcceEEEecc
Confidence 9999954 444899999999999964
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=4.5e-19 Score=184.17 Aligned_cols=283 Identities=14% Similarity=0.156 Sum_probs=200.3
Q ss_pred CCCCCCEEEEEEEeCC-CEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC
Q 001287 73 SPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1107)
Q Consensus 73 ~~h~~~V~~l~fs~d~-~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~ 150 (1107)
.+|...|.+|+=+|+. ..++|++.||.|++||+.+++++..+ .|.+.|..+++.. ..+++++.|.+|+.|.++..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~- 139 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP- 139 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-
Confidence 6799999999999987 67899999999999999999888777 6889999999987 66778888999999999852
Q ss_pred CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCC
Q 001287 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1107)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~ 230 (1107)
... .+.+. ..+..|.-+- .+..+++++. .|-|||..-...+..+. ++
T Consensus 140 --p~~---tilg~-------------s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~sms-----wG------ 186 (433)
T KOG0268|consen 140 --PLH---TILGK-------------SVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMS-----WG------ 186 (433)
T ss_pred --cce---eeecc-------------cccccccccc--ccccccccCc--eeeecccccCCccceee-----cC------
Confidence 221 12221 2344554432 2332444433 46799987766554321 11
Q ss_pred CCCCCCccccCCCCCCCCCCceeEEEeecCCC-CEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccc
Q 001287 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 309 (1107)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg-~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (1107)
...|.++.|. |.. ..|+++.+|+.|.+||+.... |+.++.+..
T Consensus 187 ------------------~Dti~svkfN-pvETsILas~~sDrsIvLyD~R~~~-----------Pl~KVi~~m------ 230 (433)
T KOG0268|consen 187 ------------------ADSISSVKFN-PVETSILASCASDRSIVLYDLRQAS-----------PLKKVILTM------ 230 (433)
T ss_pred ------------------CCceeEEecC-CCcchheeeeccCCceEEEecccCC-----------ccceeeeec------
Confidence 4568888865 654 466777799999999997652 221111000
Q ss_pred eEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcc
Q 001287 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKA 389 (1107)
Q Consensus 310 i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~ 389 (1107)
..
T Consensus 231 -------------------------RT----------------------------------------------------- 232 (433)
T KOG0268|consen 231 -------------------------RT----------------------------------------------------- 232 (433)
T ss_pred -------------------------cc-----------------------------------------------------
Confidence 00
Q ss_pred eEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCC
Q 001287 390 DLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHT 469 (1107)
Q Consensus 390 ~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1107)
T Consensus 233 -------------------------------------------------------------------------------- 232 (433)
T KOG0268|consen 233 -------------------------------------------------------------------------------- 232 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCC
Q 001287 470 QAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1107)
Q Consensus 470 ~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~ 549 (1107)
+.+++.|.+-.+++|++|..+..+|+..-.-. . ....+|..+|..++|||.|+
T Consensus 233 -----------------N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p---------~-~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 233 -----------------NTICWNPEAFNFVAANEDHNLYTYDMRNLSRP---------L-NVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred -----------------cceecCccccceeeccccccceehhhhhhccc---------c-hhhcccceeEEEeccCCCcc
Confidence 01133444447888899999999987654311 1 12568999999999999999
Q ss_pred eEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q 001287 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1107)
Q Consensus 550 ~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~i 629 (1107)
.+++|+.|.+|+||..+....- + .-...-...|.|+.||.|.+++.+||+|+.|++
T Consensus 286 EfvsgsyDksIRIf~~~~~~SR-----------d-------------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSR-----------D-------------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred hhccccccceEEEeecCCCcch-----------h-------------hhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 9999999999999998765210 0 001223567999999999999999999999999
Q ss_pred EEcCCCe
Q 001287 630 LDMNLLS 636 (1107)
Q Consensus 630 wd~~~~~ 636 (1107)
|.-...+
T Consensus 342 Wka~Ase 348 (433)
T KOG0268|consen 342 WKAKASE 348 (433)
T ss_pred eecchhh
Confidence 9876443
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1e-17 Score=179.50 Aligned_cols=296 Identities=16% Similarity=0.226 Sum_probs=216.2
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC-EEEE
Q 001287 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLI 195 (1107)
Q Consensus 117 ~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~-~ll~ 195 (1107)
.+.|+++.|+|..+.+++++.||+++|+.+|.....+++. ..+. . .+|.+.+|+| +|. ++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS-~~l~--~------------fPi~~a~f~p--~G~~~i~~ 275 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS-IHLE--K------------FPIQKAEFAP--NGHSVIFT 275 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee-eeec--c------------CccceeeecC--CCceEEEe
Confidence 3689999999999999999999999999999766666553 1122 1 6799999998 566 7889
Q ss_pred EECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEE
Q 001287 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 275 (1107)
Q Consensus 196 ~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~ 275 (1107)
++....+..||+.+.++..+..... .+++.+.... .++++++|+..+..|.|.
T Consensus 276 s~rrky~ysyDle~ak~~k~~~~~g--------------------------~e~~~~e~Fe-VShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVTKLKPPYG--------------------------VEEKSMERFE-VSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred cccceEEEEeeccccccccccCCCC--------------------------cccchhheeE-ecCCCCeEEEcccCceEE
Confidence 9999999999999988765431100 0133344444 369999999999999999
Q ss_pred EEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCcccccc
Q 001287 276 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 355 (1107)
Q Consensus 276 lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~ 355 (1107)
+-...+++.+. .++
T Consensus 329 lLhakT~eli~----------------------------------------------------------s~K-------- 342 (514)
T KOG2055|consen 329 LLHAKTKELIT----------------------------------------------------------SFK-------- 342 (514)
T ss_pred eehhhhhhhhh----------------------------------------------------------eee--------
Confidence 87765542111 000
Q ss_pred ccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCC
Q 001287 356 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 435 (1107)
Q Consensus 356 ~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (1107)
..+.+.++
T Consensus 343 -----------ieG~v~~~------------------------------------------------------------- 350 (514)
T KOG2055|consen 343 -----------IEGVVSDF------------------------------------------------------------- 350 (514)
T ss_pred -----------eccEEeeE-------------------------------------------------------------
Confidence 00001111
Q ss_pred ceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCC
Q 001287 436 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 515 (1107)
Q Consensus 436 ~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~ 515 (1107)
+|+.+++.|+..+.+|.|.+||+...
T Consensus 351 ------------------------------------------------------~fsSdsk~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 351 ------------------------------------------------------TFSSDSKELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred ------------------------------------------------------EEecCCcEEEEEcCCceEEEEecCCc
Confidence 23344556777778899999999988
Q ss_pred ceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCccee
Q 001287 516 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 595 (1107)
Q Consensus 516 ~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 595 (1107)
.+...++..+. ..=+.++.|+++.+||+|+..|.|-||+....-. ...+++
T Consensus 377 ~~~~rf~D~G~----------v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~-------------------s~~PkP 427 (514)
T KOG2055|consen 377 SCLHRFVDDGS----------VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA-------------------STNPKP 427 (514)
T ss_pred ceEEEEeecCc----------cceeeeeecCCCceEEeccCcceEEEeccchhhc-------------------cCCCCc
Confidence 76644433221 1346778889999999999999999999776422 223457
Q ss_pred EEEEeecCcCEEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCC
Q 001287 596 RAVFSLVNSPVRALQFTSSGAKLAVGFE--CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSE 673 (1107)
Q Consensus 596 ~~~~~~h~~~Vt~la~sp~~~~la~Gs~--dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~ 673 (1107)
+..+......|++|+|+||+++||.+|. ...+++..+.+.++.-.......--+.|++++|+
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS---------------- 491 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS---------------- 491 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec----------------
Confidence 7778888999999999999999999874 5679999999988873333322344678999999
Q ss_pred CCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 674 REVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 674 ~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
|.+.+|++|.++|.|.+|-.
T Consensus 492 ------P~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 492 ------PNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ------CCCceEEeecCCCceeeEee
Confidence 56889999999999999975
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.5e-18 Score=168.89 Aligned_cols=208 Identities=18% Similarity=0.250 Sum_probs=165.0
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc----ceeeeCCCCCCEEEEEEEe--CCCEEEEEeCCCcEE
Q 001287 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI----EGLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQ 101 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~----~~~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~ 101 (1107)
.....+|...|..+..+-.|++||+++.|+.||||...+. ....+.+|++||..++|.. -|.+|+|++.|+.|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3445677888888889999999999999999999998432 3447889999999999976 789999999999999
Q ss_pred EEEcCCCeeeeee---ccCCCeEEEEEecCC--CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCC
Q 001287 102 VWSLESRSLACCL---KWESNITAFSVISGS--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1107)
Q Consensus 102 vWDl~s~~~~~~~---~~~~~Vt~l~~~~~~--~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1107)
||.-+.++-...+ .|...|++++|.|.. -.|+++++||.|.|..++.+.+-... --...|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~--ki~~aH~------------ 149 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS--KIVFAHE------------ 149 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch--hhhhccc------------
Confidence 9999999654444 577899999999875 68999999999999999976332221 1133444
Q ss_pred CCeEEEEcccCCC-C-----------CEEEEEECCCeEEEEEccCCEEE---EEeCCccccccccccCCCCCCCCccccC
Q 001287 177 QPVVGVLPHPNSS-G-----------NRVLIAYENALVILWDVSEAQII---FVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1107)
Q Consensus 177 ~~V~~v~f~P~~~-~-----------~~ll~~~~dg~V~vwdl~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1107)
-.|++|+|.|... | ++|++|+.|..|+||+...+.-+ .+.+|
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H----------------------- 206 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH----------------------- 206 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc-----------------------
Confidence 6699999988532 2 67999999999999999986321 24555
Q ss_pred CCCCCCCCCceeEEEeecCCC----CEEEEEEcCCcEEEEeCC
Q 001287 242 ISEHQPEEKEISALCWASSSG----SILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg----~~l~sg~~dG~I~lWd~~ 280 (1107)
..-|..++|. |.- .+|++++.||++.||...
T Consensus 207 -------~dwVRDVAwa-P~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 207 -------KDWVRDVAWA-PSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred -------chhhhhhhhc-cccCCCceeeEEecCCCcEEEEEec
Confidence 5566668886 543 589999999999999876
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=3.8e-17 Score=165.28 Aligned_cols=226 Identities=17% Similarity=0.242 Sum_probs=178.2
Q ss_pred cccceeeeecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCcc------------eee----eCCCCCCEEEEEEE
Q 001287 23 DLNLRIAVHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIE------------GLL----ISPSQLPYKNLEFL 85 (1107)
Q Consensus 23 ~~~~~~~~~~G~~~~i~~lafsp-~~~~LA~Gs~dg~I~iw~~~~~~------------~~~----~~~h~~~V~~l~fs 85 (1107)
+++++.-+...|.+.|.+|..++ .|+++.+|+.||.|.+||+.+.. +.. ...|.-.|+.+.|-
T Consensus 31 ~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 31 QLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred eccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe
Confidence 45666666666779999999998 58999999999999999985542 111 22366789999999
Q ss_pred e-CCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCC---CEEEEEcCCCcEEEEEeecCCCceeecceeec
Q 001287 86 Q-NQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS---HFMYIGDENGLMSVIKYDADEGKLFQLPYNIS 161 (1107)
Q Consensus 86 ~-d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~---~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~ 161 (1107)
| |-+.+.|++.|.+++|||..+-+....+..++.|.+-+++|-. .++++|..+-.|++.|+.. |.... .+.
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S--Gs~sH---~Ls 185 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS--GSFSH---TLS 185 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC--Cccee---eec
Confidence 8 6678889999999999999999999999999999999999864 4888999999999999875 55553 377
Q ss_pred ccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC--EEEEEeCCccccccccccCCCCCCCCccc
Q 001287 162 ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1107)
Q Consensus 162 ~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 239 (1107)
+|. +.|.+|.|+|..+- .|++|+.||.|++||++.. ....+-.|..- .+|...
T Consensus 186 GHr------------~~vlaV~Wsp~~e~-vLatgsaDg~irlWDiRrasgcf~~lD~hn~k-------~~p~~~----- 240 (397)
T KOG4283|consen 186 GHR------------DGVLAVEWSPSSEW-VLATGSADGAIRLWDIRRASGCFRVLDQHNTK-------RPPILK----- 240 (397)
T ss_pred ccc------------CceEEEEeccCcee-EEEecCCCceEEEEEeecccceeEEeecccCc-------cCcccc-----
Confidence 887 89999999998555 4899999999999999764 44444444210 001111
Q ss_pred cCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 240 EGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 240 ~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
....+.+.|.++||. .+|.++++++.|..+++|+...+.
T Consensus 241 ----~n~ah~gkvngla~t-Sd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 241 ----TNTAHYGKVNGLAWT-SDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ----ccccccceeeeeeec-ccchhhhhccCccceEEeecccCc
Confidence 112237789999997 899999999999999999998764
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.1e-18 Score=168.39 Aligned_cols=166 Identities=14% Similarity=0.184 Sum_probs=132.8
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe---eeeee-ccCCCeEEEEEec--CCCEEEEEcCCCcEEEE
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS---LACCL-KWESNITAFSVIS--GSHFMYIGDENGLMSVI 144 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~---~~~~~-~~~~~Vt~l~~~~--~~~~l~~g~~dg~V~vw 144 (1107)
....|+..|..++..-.|.+|+++|+|++|+|+.++... ++..+ .|.++|..++|.. .+.+|++++-||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 345788889998888889999999999999999998764 33344 8999999999986 68999999999999999
Q ss_pred EeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC-EE---EEEeCCcc
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QI---IFVGGGKD 220 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~-~~---~~~~g~~~ 220 (1107)
+... +...+. |....|. ..|++|+|.|..-|-.|+|+++||.|.|.+.++. .- .....|
T Consensus 86 ke~~--g~w~k~-~e~~~h~------------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH-- 148 (299)
T KOG1332|consen 86 KEEN--GRWTKA-YEHAAHS------------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH-- 148 (299)
T ss_pred ecCC--Cchhhh-hhhhhhc------------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc--
Confidence 9765 444443 5566666 8899999999988989999999999999988765 11 111222
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC---C-----------CEEEEEEcCCcEEEEeCCCC
Q 001287 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS---G-----------SILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd---g-----------~~l~sg~~dG~I~lWd~~~~ 282 (1107)
+-.|++++|. |- | ..|++|+.|..|++|+..++
T Consensus 149 ----------------------------~~GvnsVswa-pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 149 ----------------------------EIGVNSVSWA-PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred ----------------------------ccccceeeec-CcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 6779999997 54 4 56888888999999988653
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=4.1e-16 Score=175.02 Aligned_cols=185 Identities=18% Similarity=0.254 Sum_probs=133.3
Q ss_pred CCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEE-EEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEE
Q 001287 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFL-ISITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L-~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~ 125 (1107)
+.++++++.||.|++|+....+.+....+...+..++|+|++.+| ++++.++.|.+||..+++.+..+.....+..+++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 467899999999999999765554333333456789999999877 4566789999999999988776654455678899
Q ss_pred ecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCC-eEE
Q 001287 126 ISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVI 203 (1107)
Q Consensus 126 ~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-~V~ 203 (1107)
+|+++.+++++ .++.+++|++.. +.... .++.. ..+.+++|+| ++..++++..++ .+.
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~---~~~~~-------------~~~~~~~~~~--dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET--RKVLA---EIPVG-------------VEPEGMAVSP--DGKIVVNTSETTNMAH 140 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC--CeEEe---EeeCC-------------CCcceEEECC--CCCEEEEEecCCCeEE
Confidence 99999887664 588999998864 23221 12211 2367899988 688788887765 566
Q ss_pred EEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE-EcCCcEEEEeCCCC
Q 001287 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTSTT 282 (1107)
Q Consensus 204 vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg-~~dG~I~lWd~~~~ 282 (1107)
+||..+++....... ...+.+++|. ++|++|+++ ..+|.|.+||+.++
T Consensus 141 ~~d~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV------------------------------DQRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred EEeCCCCeEEEEEEc------------------------------CCCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcc
Confidence 789888766433211 2234567875 999988655 46999999999754
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.7e-17 Score=178.36 Aligned_cols=190 Identities=17% Similarity=0.180 Sum_probs=148.6
Q ss_pred CEEEEEECC-CcEEEEeCCCcceee-eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEE
Q 001287 48 RLLAIATLD-GRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFS 124 (1107)
Q Consensus 48 ~~LA~Gs~d-g~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~ 124 (1107)
.+++++... ..|.+|.+....... ..--+++|.+|+-+|+|.+|+.++-.+.|.+|.+.+|.++..+ .|-..|||+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 355555443 678899885543322 2234678999999999999999999999999999999998877 6778999999
Q ss_pred EecCCCEEEEEcCCCcEEEEEeec----CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCC
Q 001287 125 VISGSHFMYIGDENGLMSVIKYDA----DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1107)
Q Consensus 125 ~~~~~~~l~~g~~dg~V~vw~~d~----~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg 200 (1107)
|+.++.++++|+.||.|.+|.+.. ++..-....+.+..|. -+|+.+...+.....+|++++.|.
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht------------lsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT------------LSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc------------ceeEEEEecCCCccceEEEecCCc
Confidence 999999999999999999999743 1111111124455555 678888876654456799999999
Q ss_pred eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 201 ~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
++++||++.+.++...-. +..+++++- .|-+..+++|..+|.|.+.++.
T Consensus 199 t~k~wdlS~g~LLlti~f------------------------------p~si~av~l-Dpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITF------------------------------PSSIKAVAL-DPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eEEEEEeccceeeEEEec------------------------------CCcceeEEE-cccccEEEecCCcceEEeeehh
Confidence 999999999988765433 677888885 5999999999999999987774
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=4.8e-18 Score=192.32 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=116.3
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCcccee
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~ 576 (1107)
.++++++.|.+++||+..+..- ...+..|.++|.|+.|+|+..+||+||+|++|+||++......
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~----------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~----- 255 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRC----------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK----- 255 (839)
T ss_pred eEEEecCCceEEEeeccCchhH----------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-----
Confidence 7899999999999999876522 0347899999999999999999999999999999999865221
Q ss_pred eccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCC-CEEEEEe--CCCeEEEEEcCCCeEEEEeecCCCCCCceEE
Q 001287 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGF--ECGRVAVLDMNLLSVLFFTDDISGSSSPIIS 653 (1107)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~-~~la~Gs--~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~ 653 (1107)
...+ ..-..+|..|+|-|.. .+||+++ .|-.|+|||++.+.+-+ ..+..|...|+.
T Consensus 256 ------------------~~~t-InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~--~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 256 ------------------PKHT-INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY--ATFLEHTDSVTG 314 (839)
T ss_pred ------------------ceeE-EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc--eeeeccCccccc
Confidence 1111 1335789999999975 4677775 57789999999988764 456779999999
Q ss_pred EEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 654 l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
++|.. .+..+|.++++||+|+---.+
T Consensus 315 i~W~~---------------------~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 315 IAWDS---------------------GDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeccC---------------------CCceeeEeecCccHHHHhhhh
Confidence 99994 235679999999998755443
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.9e-17 Score=186.09 Aligned_cols=214 Identities=15% Similarity=0.268 Sum_probs=167.9
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc-cee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 26 ~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
.|+..+|+|..+-+.++|+|+|.+|.+++.||.|++|+.... +.- ++--+...|.+++-. +.+|++++.+++|.++
T Consensus 4 ~r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 4 TRLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRY 81 (933)
T ss_pred ccccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEe
Confidence 356678999999999999999999999999999999987443 211 111266677776654 4589999999999999
Q ss_pred EcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 104 Dl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
...+++.-..+ .+.-++.+++|+.++.+++.|+.|-.|++.+.+....... +.+|. ++|.+|
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-----lrgh~------------apVl~l 144 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-----LRGHD------------APVLQL 144 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-----ecccC------------Cceeee
Confidence 99998765444 5677889999999999999999999999999876443333 66666 899999
Q ss_pred EcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC
Q 001287 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1107)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1107)
.|+| .+++|++.+.||.|.+||+..+.+........... +......++.++|+ |+|
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n---------------------~~~~s~i~~~~aW~-Pk~ 200 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN---------------------EFILSRICTRLAWH-PKG 200 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccc---------------------cccccceeeeeeec-CCC
Confidence 9999 78899999999999999999987755432200000 00114556778997 999
Q ss_pred CEEEEEEcCCcEEEEeCCCC
Q 001287 263 SILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 263 ~~l~sg~~dG~I~lWd~~~~ 282 (1107)
..++..+.|+.|.+|+..+.
T Consensus 201 g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 201 GTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred CeEEeeccCCeEEEEccCCc
Confidence 99999999999999998654
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=5e-17 Score=178.79 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=116.4
Q ss_pred cCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCC
Q 001287 491 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1107)
Q Consensus 491 ~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~ 570 (1107)
|+|....++.+.+ ..|||||+....+. ..+......|..|+.+|.|-.|+.|+.|+.+..||++..+.
T Consensus 574 FHPs~p~lfVaTq-~~vRiYdL~kqelv-----------KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 574 FHPSKPYLFVATQ-RSVRIYDLSKQELV-----------KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred ecCCCceEEEEec-cceEEEehhHHHHH-----------HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc
Confidence 3333334444443 57999999876644 22333345799999999999999999999999999987632
Q ss_pred CccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE------cCCCeEEEEeecC
Q 001287 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD------MNLLSVLFFTDDI 644 (1107)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd------~~~~~~~~~~~~~ 644 (1107)
+..++..|...|++++|++...++|+|++||++.|+. +...-++.-+..+
T Consensus 642 ------------------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 642 ------------------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred ------------------------hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 4567789999999999999999999999999999984 4444455566778
Q ss_pred CCCCCc----eEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEE
Q 001287 645 SGSSSP----IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1107)
Q Consensus 645 ~~h~~~----V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~ 697 (1107)
.+|..- |....|. |...+|++++.||+|++|
T Consensus 698 ~gH~~~~~~gVLd~~wH----------------------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWH----------------------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCceeecccceEeeccc----------------------CCCceEEecCCCceEEee
Confidence 888765 7777888 557889999999999998
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.77 E-value=8e-17 Score=180.55 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=110.1
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCcccee
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~ 576 (1107)
.++||+.|.+||+|.-.+.. ..+.+|..-|+.|++-+++. |++++.||.|++|++...
T Consensus 153 ~~vTgsaDKtIklWk~~~~l-------------~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge-------- 210 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGGTLL-------------KTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGE-------- 210 (745)
T ss_pred cEEeccCcceeeeccCCchh-------------hhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCc--------
Confidence 79999999999999874332 35889999999999998754 567899999999999775
Q ss_pred eccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEE
Q 001287 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTW 656 (1107)
Q Consensus 577 ~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~f 656 (1107)
++....+|..-|.+++..+++..++++++|++++||+.. .+. +.+.-....|.++.+
T Consensus 211 ------------------~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~---q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 211 ------------------VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECV---QVITLPTTSIWSAKV 267 (745)
T ss_pred ------------------eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceE---EEEecCccceEEEEE
Confidence 778889999999999988888999999999999999988 333 121112336777766
Q ss_pred eecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 657 TEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 657 s~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
-..+ -+++|++||.|+||..+
T Consensus 268 L~Ng-----------------------DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 268 LLNG-----------------------DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeCC-----------------------CEEEeccCceEEEEEec
Confidence 6332 28999999999999865
No 133
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.7e-17 Score=165.27 Aligned_cols=198 Identities=16% Similarity=0.252 Sum_probs=145.6
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce-----e---eeCCCCCCEEEEEEEeCC-CEEEEEeCCCc
Q 001287 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-----L---LISPSQLPYKNLEFLQNQ-GFLISITNDNE 99 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~-----~---~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~ 99 (1107)
...-||...|++++|++||+.||+++.|+.|+||+.+.-+. + .... .-+.+.|+||- ..++++-..+.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEEEEccCCE
Confidence 34569999999999999999999999999999999854211 1 2222 35788999975 46677777888
Q ss_pred EEEEEcCCCe---e-eeee---------ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccc
Q 001287 100 IQVWSLESRS---L-ACCL---------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1107)
Q Consensus 100 I~vWDl~s~~---~-~~~~---------~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1107)
|+|+.+..++ . .+.. .|.-.|..+-....+.++++++.|..|.+|++. |.+.+. +....
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk---Gq~L~~---idtnq-- 228 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK---GQLLQS---IDTNQ-- 228 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC---Cceeee---ecccc--
Confidence 9999886553 1 1111 233456677777788999999999999999987 566543 44433
Q ss_pred cccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC---------EEEEEeCCccccccccccCCCCCCCCc
Q 001287 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA---------QIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1107)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~ 237 (1107)
..-+..+.+| +|..++++.-.-.|+||.+--+ ++..+.||
T Consensus 229 ----------~~n~~aavSP--~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH------------------- 277 (420)
T KOG2096|consen 229 ----------SSNYDAAVSP--DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH------------------- 277 (420)
T ss_pred ----------ccccceeeCC--CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-------------------
Confidence 2234445666 6887887777778899985321 22334455
Q ss_pred cccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 238 FLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 238 ~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
...|+++|| +++...+++.+.||++++||++
T Consensus 278 -----------~saV~~~aF-sn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 278 -----------QSAVLAAAF-SNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred -----------hhheeeeee-CCCcceeEEEecCCcEEEeecc
Confidence 778999996 5999999999999999999985
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=2.4e-17 Score=177.37 Aligned_cols=282 Identities=13% Similarity=0.211 Sum_probs=214.4
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe---ee---eeeccCCCeEEEEEecCCCEEEEEcCCCcEEEE
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS---LA---CCLKWESNITAFSVISGSHFMYIGDENGLMSVI 144 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~---~~---~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw 144 (1107)
....|..-|.++.+|...+++.+++ .|-|+|||+.... .+ ..+....-|.++...++++.|++|++-.++.||
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 3445878888899998878888887 6779999996642 22 233455678899999999999999999999999
Q ss_pred EeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE-EEeCCccccc
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQL 223 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~-~~~g~~~~~~ 223 (1107)
|+...+-++.. .++... ..+++++.+| +.+..++++.||.|+|||+....++ .+.||
T Consensus 493 DLAapTprika---eltssa------------paCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~VrqfqGh----- 550 (705)
T KOG0639|consen 493 DLAAPTPRIKA---ELTSSA------------PACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH----- 550 (705)
T ss_pred eccCCCcchhh---hcCCcc------------hhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeecccCC-----
Confidence 99875433321 122211 4577888888 7888899999999999999998665 46677
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccc
Q 001287 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1107)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (1107)
...+.|+. .++||..|-+|+-|.+|+.||+..+.....
T Consensus 551 -------------------------tDGascId-is~dGtklWTGGlDntvRcWDlregrqlqq---------------- 588 (705)
T KOG0639|consen 551 -------------------------TDGASCID-ISKDGTKLWTGGLDNTVRCWDLREGRQLQQ---------------- 588 (705)
T ss_pred -------------------------CCCceeEE-ecCCCceeecCCCccceeehhhhhhhhhhh----------------
Confidence 66788888 469999999999999999999976521110
Q ss_pred ccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCC
Q 001287 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1107)
Q Consensus 304 ~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~ 383 (1107)
.+|.
T Consensus 589 --------------------------------------------hdF~-------------------------------- 592 (705)
T KOG0639|consen 589 --------------------------------------------HDFS-------------------------------- 592 (705)
T ss_pred --------------------------------------------hhhh--------------------------------
Confidence 0000
Q ss_pred CCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhcc
Q 001287 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1107)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1107)
.+|
T Consensus 593 --------------SQI--------------------------------------------------------------- 595 (705)
T KOG0639|consen 593 --------------SQI--------------------------------------------------------------- 595 (705)
T ss_pred --------------hhh---------------------------------------------------------------
Confidence 000
Q ss_pred ccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEE
Q 001287 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1107)
Q Consensus 464 ~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~ 543 (1107)
..+..+|.++.++.|-.++.|.|...+...-. .+.-|..-|.+|.
T Consensus 596 -----------------------fSLg~cP~~dWlavGMens~vevlh~skp~ky------------qlhlheScVLSlK 640 (705)
T KOG0639|consen 596 -----------------------FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY------------QLHLHESCVLSLK 640 (705)
T ss_pred -----------------------eecccCCCccceeeecccCcEEEEecCCccce------------eecccccEEEEEE
Confidence 01135577778999999999888877766522 2567888999999
Q ss_pred EEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEE-eecCcCEEEEEEcCCCCEEEEEe
Q 001287 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSSGAKLAVGF 622 (1107)
Q Consensus 544 fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~h~~~Vt~la~sp~~~~la~Gs 622 (1107)
|.+-|+++++.+.|.-+-.|....... .| ...+++|+++.+|.|.++|++|+
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPyGas---------------------------iFqskE~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPYGAS---------------------------IFQSKESSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred ecccCceeeecCchhhhhhccCccccc---------------------------eeeccccCcceeeeeccCceEEEecC
Confidence 999999999999999999998766522 12 24578899999999999999999
Q ss_pred CCCeEEEEEc
Q 001287 623 ECGRVAVLDM 632 (1107)
Q Consensus 623 ~dg~V~iwd~ 632 (1107)
.|..-.||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9988888865
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=8.7e-16 Score=172.36 Aligned_cols=141 Identities=15% Similarity=0.205 Sum_probs=101.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEE-EEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~-~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
..++|.+.|+.|.+||+.+++.+..+.....+.+++|+|++..++ ++..++.|++|+.+. +++... ++.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~---~~~~---- 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT--GEVIGT---LPSG---- 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC--CcEEEe---ccCC----
Confidence 457888999999999999998888776666678899999998774 667889999998764 343321 3222
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEE-ECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1107)
..+..+.|+| +++.++++ ..++.|++||+.+.+.+....+
T Consensus 73 ---------~~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---------------------------- 113 (300)
T TIGR03866 73 ---------PDPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV---------------------------- 113 (300)
T ss_pred ---------CCccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----------------------------
Confidence 2356788988 56656555 4589999999998776544322
Q ss_pred CCCCceeEEEeecCCCCEEEEEEcCCc-EEEEeCC
Q 001287 247 PEEKEISALCWASSSGSILAVGYIDGD-ILLWNTS 280 (1107)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~dG~-I~lWd~~ 280 (1107)
...+.+++|. |+|.+++++..++. +.+||..
T Consensus 114 --~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 114 --GVEPEGMAVS-PDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred --CCCcceEEEC-CCCCEEEEEecCCCeEEEEeCC
Confidence 2235678875 99999998887654 5556654
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.2e-16 Score=160.10 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=117.6
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceee--eeecCCCCCeEEEEEEeC---CCeEEEeccC-----ceEEEEEec
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQG--IEVAGSRAPVSTLSFCFI---NSSLAVGNEF-----GLVYIYNLN 566 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~--~~l~~h~~~Vt~l~fspd---~~~Lasg~~d-----g~V~vw~~~ 566 (1107)
.+|+++.||++|||++..+.-...-.+..++.. .....+..+-.|+.|+|. ..+||+|+.+ +.++||...
T Consensus 128 klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~ 207 (361)
T KOG2445|consen 128 KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN 207 (361)
T ss_pred EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec
Confidence 789999999999999765542111112111110 123356678899999974 3568888876 689999988
Q ss_pred CCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCC----CCEEEEEeCCCeEEEEEcCCCe------
Q 001287 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS----GAKLAVGFECGRVAVLDMNLLS------ 636 (1107)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~----~~~la~Gs~dg~V~iwd~~~~~------ 636 (1107)
.+.+ -++.+..+..|..+|++|+|.|+ ..+||+++.|| |+||.+....
T Consensus 208 e~~r---------------------Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~e 265 (361)
T KOG2445|consen 208 ENGR---------------------KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEE 265 (361)
T ss_pred CCcc---------------------eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhh
Confidence 7632 23345567789999999999996 37899999999 9999997311
Q ss_pred -----------EEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 637 -----------VLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 637 -----------~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
.+..+..+.+|...|..+.|... +.+|.+.+.||.|++|-..
T Consensus 266 e~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt----------------------GtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 266 EVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT----------------------GTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cccCCCCccccceEEeeeccCCCCceEEEEEeee----------------------eeEEeecCCCceeeehhhh
Confidence 23334567889999999999943 7789999999999999864
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.6e-16 Score=158.37 Aligned_cols=180 Identities=13% Similarity=0.152 Sum_probs=115.8
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|..-|+++.|++.|++|++++.|++|+||+++.++++...+ -....|. +.|..|.|-+..-|+.++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T-s~Wrah~------------~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT-SSWRAHD------------GSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe-eeEEecC------------CcEEEEEecCccccceEE
Confidence 456779999999999999999999999999998777776532 2233343 889999997777899999
Q ss_pred EEECCCeEEEEEccCCEEEEEeCCc-cccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC--CCEEEEEEcC
Q 001287 195 IAYENALVILWDVSEAQIIFVGGGK-DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGYID 271 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd--g~~l~sg~~d 271 (1107)
+++.|+++.||.-...... .|. .+... ....+.+..|+.++|. |. |-.|++++.|
T Consensus 78 ~cS~Drtv~iWEE~~~~~~---~~~~~Wv~~------------------ttl~DsrssV~DV~Fa-P~hlGLklA~~~aD 135 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSEE---AHGRRWVRR------------------TTLVDSRSSVTDVKFA-PKHLGLKLAAASAD 135 (361)
T ss_pred EEecCCceeeeeecccccc---cccceeEEE------------------EEeecCCcceeEEEec-chhcceEEEEeccC
Confidence 9999999999975321110 000 00000 0001227789999975 64 6689999999
Q ss_pred CcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCC
Q 001287 272 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDE 336 (1107)
Q Consensus 272 G~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~ 336 (1107)
|.|+||+.........-.-.+ .+..+....+....+-..+.|+.. .....+++.|..+
T Consensus 136 G~lRIYEA~dp~nLs~W~Lq~--Ei~~~~~pp~~~~~~~~CvsWn~s-----r~~~p~iAvgs~e 193 (361)
T KOG2445|consen 136 GILRIYEAPDPMNLSQWTLQH--EIQNVIDPPGKNKQPCFCVSWNPS-----RMHEPLIAVGSDE 193 (361)
T ss_pred cEEEEEecCCccccccchhhh--hhhhccCCcccccCcceEEeeccc-----cccCceEEEEccc
Confidence 999999987653222100000 000011122334556667777742 2234556666554
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.8e-16 Score=160.58 Aligned_cols=204 Identities=15% Similarity=0.189 Sum_probs=154.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
-++. +.|+.|++.|.+||+|..||+|.|||+.+.. ...+.+|..||++|+||+||+.|+++|.|..|.+||+..+.++
T Consensus 22 d~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 4444 8999999999999999999999999996544 4478899999999999999999999999999999999999999
Q ss_pred eeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 112 CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 112 ~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
+.+.+.++|+...|+|.....++++ -+..-.+.+++....++ ++...- ... ...-.+..|++ .|
T Consensus 101 ~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~------Lp~d~d-~dl------n~sas~~~fdr--~g 165 (405)
T KOG1273|consen 101 KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV------LPKDDD-GDL------NSSASHGVFDR--RG 165 (405)
T ss_pred eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee------ccCCCc-ccc------ccccccccccC--CC
Confidence 9999999999999999875444432 22223455554311111 221110 000 01122335755 68
Q ss_pred CEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001287 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1107)
+++++|...|-+.++|.++.+++..+.-+. ...|..+-+ +..|++|+.-+.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits----------------------------~~~IK~I~~-s~~g~~liiNts 216 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITS----------------------------VQAIKQIIV-SRKGRFLIINTS 216 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeech----------------------------heeeeEEEE-eccCcEEEEecC
Confidence 999999999999999999988765432200 245777775 489999999999
Q ss_pred CCcEEEEeCCC
Q 001287 271 DGDILLWNTST 281 (1107)
Q Consensus 271 dG~I~lWd~~~ 281 (1107)
|..|+.|++..
T Consensus 217 DRvIR~ye~~d 227 (405)
T KOG1273|consen 217 DRVIRTYEISD 227 (405)
T ss_pred CceEEEEehhh
Confidence 99999999863
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.74 E-value=3.2e-16 Score=168.06 Aligned_cols=200 Identities=19% Similarity=0.241 Sum_probs=158.6
Q ss_pred CCCCCeEEEEEcCCC--CEEEEEECCCcEEEEeCCC-----cceeeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEE
Q 001287 33 GIPATASILAFDHIQ--RLLAIATLDGRIKVIGGDG-----IEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 33 G~~~~i~~lafsp~~--~~LA~Gs~dg~I~iw~~~~-----~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWD 104 (1107)
-+++.|++++|+|.. +++|+|...|+|-+||+.+ ..+....+|.++|++|.|+| |-.++++.|.||+|+.=|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 467899999999975 5999999999999999942 24568889999999999999 456899999999999999
Q ss_pred cCCCeeeeeec---cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 105 LESRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 105 l~s~~~~~~~~---~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
++....-..+. -...+..+.|+....-++.|+.-|...+|++.....+.. .+.-|. ..|++
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~----~~~lh~------------kKI~s 327 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE----NLRLHK------------KKITS 327 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch----hhhhhh------------cccce
Confidence 99885433332 234577888888889999999888888999876533222 133333 46999
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEccCCEE-----EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQI-----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
|+++|.. ...|++++.|++.+|||++.-.. +....| ...|.+++
T Consensus 328 v~~NP~~-p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H------------------------------rrsV~sAy 376 (498)
T KOG4328|consen 328 VALNPVC-PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH------------------------------RRSVNSAY 376 (498)
T ss_pred eecCCCC-chheeecccCcceeeeehhhhcCCCCcceecccc------------------------------cceeeeeE
Confidence 9999984 44599999999999999876322 222333 78899999
Q ss_pred eecCCCCEEEEEEcCCcEEEEeCC
Q 001287 257 WASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 257 w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
| ||.|..|+|.+.|..|+|||..
T Consensus 377 F-SPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 377 F-SPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred E-cCCCCceEeeccCCceEEeecc
Confidence 6 5988889999999999999974
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=3.2e-16 Score=174.03 Aligned_cols=233 Identities=16% Similarity=0.208 Sum_probs=159.2
Q ss_pred eeeecCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEeCCCcc-------eeeeCCCCCCEEEEEEEeCCCEEEEEeCC
Q 001287 28 IAVHYGIPATASILAFDH---IQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQNQGFLISITND 97 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp---~~~~LA~Gs~dg~I~iw~~~~~~-------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d 97 (1107)
.+.+.|+|-+.-+..|++ ...+||++.+||.|.|||..... ......|...|-.+.|.|...+|++++.|
T Consensus 42 s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 42 SYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 345567777776666654 45699999999999999974332 23455699999999999988899999999
Q ss_pred CcEEEEEcCCCeeeee---eccCCCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCcee----ecc---eee-cccc-
Q 001287 98 NEIQVWSLESRSLACC---LKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLF----QLP---YNI-SADA- 164 (1107)
Q Consensus 98 ~~I~vWDl~s~~~~~~---~~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~----~~~---~~i-~~~~- 164 (1107)
.+|++||+.+.++... ++|.+.|.+++|.+..+ .+++|+.||.|.|||+....-... ... ++- +.+.
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 9999999999988754 48999999999999875 678999999999999875320000 000 000 0010
Q ss_pred -cccccCCCCC----CCCCeEEEEcccCCCCCEEEEEEC-CCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCcc
Q 001287 165 -LSEKAGFPLL----SHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1107)
Q Consensus 165 -~~~~~~~~~~----~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 238 (1107)
+.+.+.-... -...|+.+.| .++. .|++++. |+.|+|||++........+. .+..+..
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~f--kDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep-------------~~~~~~~ 265 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLF--KDES-TLASAGAADSTIKVWDLRKNYTAYRQEP-------------RGSDKYP 265 (720)
T ss_pred hhhccccccccccCceeeeeEEEEE--eccc-eeeeccCCCcceEEEeecccccccccCC-------------CcccCcc
Confidence 0010000001 1245778888 4344 4888777 99999999998765433221 0000000
Q ss_pred ccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 239 ~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
......-.+++++-. ..|.+|++.+.|+.|++||+.+.
T Consensus 266 -----t~skrs~G~~nL~lD-ssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 266 -----THSKRSVGQVNLILD-SSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred -----CcccceeeeEEEEec-CCCCeEEEEecCCcEEEEecccc
Confidence 001124468888854 77899999999999999999754
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=6.5e-17 Score=174.02 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=120.3
Q ss_pred CccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEec
Q 001287 487 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1107)
Q Consensus 487 ~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~ 566 (1107)
+|+.+++||..|-||+-|.+||.||+..+... .+. .....|-+|.+||++.+|++|-.++.|.|-..+
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrql---------qqh---dF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQL---------QQH---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhh---------hhh---hhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 34567788889999999999999999877622 111 123468899999999999999999998887766
Q ss_pred CCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCC
Q 001287 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1107)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~ 646 (1107)
... ...+..|.+-|.+|.|++.|+++++.+.|..+-.|.+.-+.-+|+...
T Consensus 623 kp~--------------------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE--- 673 (705)
T KOG0639|consen 623 KPE--------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--- 673 (705)
T ss_pred Ccc--------------------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---
Confidence 541 133456889999999999999999999999999999998888877654
Q ss_pred CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
.++|.++..+ .++.++++|+.|..-.|+..
T Consensus 674 -~SsVlsCDIS----------------------~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 -SSSVLSCDIS----------------------FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -cCcceeeeec----------------------cCceEEEecCCCcceEEEEE
Confidence 6789988888 45889999999977777653
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=4e-16 Score=173.28 Aligned_cols=164 Identities=12% Similarity=0.079 Sum_probs=115.4
Q ss_pred ccCCCCcEEEEEec-CCcEEEEeCCCCceeEEEeeccceeeeeecCC---CCCeEEEEEEeCCCeEEEeccCceEEEEEe
Q 001287 490 KCHSVDRVYLAGYH-DGSVRIWDATYPVFKLICALDAEVQGIEVAGS---RAPVSTLSFCFINSSLAVGNEFGLVYIYNL 565 (1107)
Q Consensus 490 ~~s~~~~~laTgs~-DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h---~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~ 565 (1107)
-+..|...||+++. |+.|||||+...... +....... ..+..| ...+++|.....|.+|...+.|+.|+.|++
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~--~r~ep~~~-~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTA--YRQEPRGS-DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccc--cccCCCcc-cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence 45577888999887 999999999876532 11111100 012223 346788888888899888888999999999
Q ss_pred cCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEE--EEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec
Q 001287 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR--ALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1107)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt--~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~ 643 (1107)
...... ++..+.++...-. .-..+|++.++++|+.|..+++|.+..+..- ...
T Consensus 301 ~s~s~s-----------------------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~--~~~ 355 (720)
T KOG0321|consen 301 RSLSIS-----------------------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP--PAL 355 (720)
T ss_pred cccCcC-----------------------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC--hhh
Confidence 876321 2222333221111 1236899999999999999999999877543 235
Q ss_pred CCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCc
Q 001287 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1107)
Q Consensus 644 ~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g 702 (1107)
+.||...|++++|.+.... . +++++.|..+.+|+...|
T Consensus 356 l~Ght~eVt~V~w~pS~~t--------------------~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 356 LLGHTREVTTVRWLPSATT--------------------P-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhCcceEEEEEeeccccCC--------------------C-ceeeccCcceEEEeccCc
Confidence 6789999999999965433 2 677799999999998654
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.4e-15 Score=173.96 Aligned_cols=160 Identities=15% Similarity=0.282 Sum_probs=126.0
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-eeeeeec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
+...|....+.|+|.++|.+|+++++|+.|++|+..+- +.-.++. +...|++++. .+.++++|+.+++|.++.++.
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 34578999999999999999999999999999997655 2222222 5566777766 455999999999999999886
Q ss_pred CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE-EEEEeCCccccccccc
Q 001287 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDGV 227 (1107)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~-~~~~~g~~~~~~~~~~ 227 (1107)
....-..++|++| +.+++|+ .+|+.++.|+.|-.|++-+..... ....++|
T Consensus 86 ~~~~~iL~Rftlp-----------------~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh--------- 137 (933)
T KOG1274|consen 86 GEEDTILARFTLP-----------------IRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH--------- 137 (933)
T ss_pred CCccceeeeeecc-----------------ceEEEEe--cCCcEEEeecCceeEEEEeccccchheeeccc---------
Confidence 4332222234444 7888884 478899999999999999987654 4556677
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
..+|.++.|+ |++.+||+.+.||.|++|++.++
T Consensus 138 ---------------------~apVl~l~~~-p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 138 ---------------------DAPVLQLSYD-PKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred ---------------------CCceeeeeEc-CCCCEEEEEecCceEEEEEcccc
Confidence 8899999986 99999999999999999999755
No 144
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=8.4e-16 Score=165.51 Aligned_cols=274 Identities=14% Similarity=0.188 Sum_probs=196.6
Q ss_pred CcccccccceeeeecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCcc-----------eeeeCCCCCCEEEEEEE
Q 001287 18 SLTAADLNLRIAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIE-----------GLLISPSQLPYKNLEFL 85 (1107)
Q Consensus 18 ~l~~~~~~~~~~~~~G~~~~i~~lafsp~~-~~LA~Gs~dg~I~iw~~~~~~-----------~~~~~~h~~~V~~l~fs 85 (1107)
++-+..-+.+....+-|++.|.-+.|=|.. .++|+++..|.|+|||..... -+.+.+|+..=..|+|+
T Consensus 107 g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 107 GFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred CccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccc
Confidence 333555567788888999999999999965 578889999999999974321 12566788766679998
Q ss_pred e-CCCEEEEEeCCCcEEEEEcCCCee-------e-eeeccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceee
Q 001287 86 Q-NQGFLISITNDNEIQVWSLESRSL-------A-CCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 86 ~-d~~~L~S~s~d~~I~vWDl~s~~~-------~-~~~~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
+ ..++|++++.|++|.+||+..... . ....|...|..++|++.. ..+++.+.|+.+.|||......+..
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~- 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS- 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc-
Confidence 7 457899999999999999966532 1 222688899999999876 5677888999999999874222222
Q ss_pred cceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE--EEEEeCCccccccccccCCCCC
Q 001287 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSE 233 (1107)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~--~~~~~g~~~~~~~~~~~~~~~~ 233 (1107)
....+|. ..|.|++|+|- ++..||+|+.|++|.+||++.-. +..+.+|
T Consensus 266 --~~~~ah~------------~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H--------------- 315 (422)
T KOG0264|consen 266 --HSVKAHS------------AEVNCVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGH--------------- 315 (422)
T ss_pred --ccccccC------------CceeEEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCC---------------
Confidence 2355555 88999999998 56679999999999999998854 3445555
Q ss_pred CCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEE
Q 001287 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 313 (1107)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 313 (1107)
+..|.++.|.......|++++.||.+.+||+......+........+. .+....+.+...|..+
T Consensus 316 ---------------~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp-EllF~HgGH~~kV~Df 379 (422)
T KOG0264|consen 316 ---------------EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP-ELLFIHGGHTAKVSDF 379 (422)
T ss_pred ---------------CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc-ceeEEecCcccccccc
Confidence 888999999744456789999999999999976543332111111111 1122233344455666
Q ss_pred EeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccc
Q 001287 314 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1107)
Q Consensus 314 ~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~ 352 (1107)
+| .+.....+++...|. ++.+|...
T Consensus 380 sW-------np~ePW~I~SvaeDN-------~LqIW~~s 404 (422)
T KOG0264|consen 380 SW-------NPNEPWTIASVAEDN-------ILQIWQMA 404 (422)
T ss_pred cC-------CCCCCeEEEEecCCc-------eEEEeecc
Confidence 55 445678888888886 77777554
No 145
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=2.2e-16 Score=179.03 Aligned_cols=203 Identities=15% Similarity=0.280 Sum_probs=154.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc---cee-ee-CCCC---CCEEEEEEEe-CCCEEEEEeCCCcE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGL-LI-SPSQ---LPYKNLEFLQ-NQGFLISITNDNEI 100 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~---~~~-~~-~~h~---~~V~~l~fs~-d~~~L~S~s~d~~I 100 (1107)
.+.-+...+.++...++-..|++++. ...+||.+... +.. .. ...+ ..+..+.|.. +..+|++++..|.|
T Consensus 34 ~~~~~k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 34 MNCKLKAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred eeeecccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE
Confidence 45557778899999999988888875 56788876432 211 11 1111 1345566664 45789999999999
Q ss_pred EEEEcCC---Ceeeeee-ccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCC
Q 001287 101 QVWSLES---RSLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1107)
Q Consensus 101 ~vWDl~s---~~~~~~~-~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1107)
.+||+.. .+++..+ .|+..++++.|++.. .+|++|++||.|++||+.....+.. +.+..
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t-----~~~nS----------- 176 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST-----FRSNS----------- 176 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc-----ccccc-----------
Confidence 9999988 3444555 788999999999876 5788999999999999986543332 22222
Q ss_pred CCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE--EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCcee
Q 001287 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1107)
Q Consensus 176 ~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 253 (1107)
+.|..|.|+|. .+..+++++.+|.+.+||++.... ..+..| .++|.
T Consensus 177 -ESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH------------------------------~GpV~ 224 (839)
T KOG0269|consen 177 -ESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH------------------------------NGPVL 224 (839)
T ss_pred -hhhhceeeccC-CCceEEEecCCceEEEeeccCchhHHHHhhcc------------------------------cCceE
Confidence 77999999998 567799999999999999987543 223333 88999
Q ss_pred EEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 254 ALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 254 sl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
|+-|+ |++.+||+|+.|+.|+||++.+.
T Consensus 225 c~nwh-Pnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 225 CLNWH-PNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred EEeec-CCCceeeecCCCccEEEEeccCC
Confidence 99998 99999999999999999999753
No 146
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=4.2e-16 Score=167.79 Aligned_cols=217 Identities=12% Similarity=0.157 Sum_probs=159.8
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCcc--------eeeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEE
Q 001287 33 GIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIE--------GLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQV 102 (1107)
Q Consensus 33 G~~~~i~~lafsp~~-~~LA~Gs~dg~I~iw~~~~~~--------~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~v 102 (1107)
||...-..|.|++.. ..|++|+.|+.|++||+.... .....+|+..|..++|++ +...+.+++.|+.+.|
T Consensus 175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 444455668998865 588999999999999984322 236678999999999998 5567899999999999
Q ss_pred EEcCCC--eeeeee-ccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCC
Q 001287 103 WSLESR--SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1107)
Q Consensus 103 WDl~s~--~~~~~~-~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1107)
||++++ +..... .|.+.|.|++|+|-+ ..||+|+.|++|.+||+.. +.+.++.+.+|. +.
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn----L~~~lh~~e~H~------------de 318 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN----LNKPLHTFEGHE------------DE 318 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh----cccCceeccCCC------------cc
Confidence 999953 333333 688999999999875 6788999999999999874 444557788888 89
Q ss_pred eEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEee
Q 001287 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1107)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~ 258 (1107)
|.+|.|+|. ..+.|++++.|+.+.|||+..-.-.... ..+..+..+.+-.+..+...|..+.|.
T Consensus 319 v~~V~WSPh-~etvLASSg~D~rl~vWDls~ig~eq~~---------------eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 319 VFQVEWSPH-NETVLASSGTDRRLNVWDLSRIGEEQSP---------------EDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred eEEEEeCCC-CCceeEecccCCcEEEEeccccccccCh---------------hhhccCCcceeEEecCcccccccccCC
Confidence 999999998 4556999999999999998753211100 000000000011111227779999997
Q ss_pred cCCCCEEEEEEcCCcEEEEeCCC
Q 001287 259 SSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 259 spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
..+-..|++...|+.+.||.+..
T Consensus 383 p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCeEEEEecCCceEEEeeccc
Confidence 33445678889999999999874
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=6.9e-15 Score=149.12 Aligned_cols=161 Identities=17% Similarity=0.283 Sum_probs=122.7
Q ss_pred eeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEcCCCe------e----eeee------ccCCCeEEEEEecCCC-EE
Q 001287 71 LISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRS------L----ACCL------KWESNITAFSVISGSH-FM 132 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl~s~~------~----~~~~------~~~~~Vt~l~~~~~~~-~l 132 (1107)
+...|.+.|..|+..+ .|+|++|++.||.|.|||++... + ++.. .|.-.|+.+.|-|-.. .+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4567899999999987 67899999999999999997642 1 1211 2445788888888654 66
Q ss_pred EEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC-CCEEEEEECCCeEEEEEccCCE
Q 001287 133 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS-GNRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 133 ~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~-~~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
.+++-|.+++|||..+..... .|+++ +.|++-+++|-+. ..++++|+.+-.|++-|+.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~---~F~me---------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV---DFKME---------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ecccccceEEEeecccceeeE---EeecC---------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 677789999999977421111 13333 5688888888644 5567888889999999999997
Q ss_pred EE-EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEEEEEcCCcEEEEeCC
Q 001287 212 II-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 212 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~dG~I~lWd~~ 280 (1107)
.- .+.|| +..|.++.|. |... .|++|+.||.|++||+.
T Consensus 180 ~sH~LsGH------------------------------r~~vlaV~Ws-p~~e~vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 180 FSHTLSGH------------------------------RDGVLAVEWS-PSSEWVLATGSADGAIRLWDIR 219 (397)
T ss_pred ceeeeccc------------------------------cCceEEEEec-cCceeEEEecCCCceEEEEEee
Confidence 74 45677 7889999996 6655 57899999999999985
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.9e-17 Score=186.06 Aligned_cols=168 Identities=17% Similarity=0.272 Sum_probs=152.3
Q ss_pred CCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCce
Q 001287 480 GGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL 559 (1107)
Q Consensus 480 gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~ 559 (1107)
.||...+.++.++....+|++|+.||+|++||+...... ..|.+|...+..++|+|.+.+.|+|+.|+.
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v-----------rtLtgh~~~~~sv~f~P~~~~~a~gStdtd 135 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV-----------RTLTGHLLNITSVDFHPYGEFFASGSTDTD 135 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh-----------hhhhccccCcceeeeccceEEecccccccc
Confidence 356677788899999999999999999999999876633 358899999999999999999999999999
Q ss_pred EEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 001287 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLF 639 (1107)
Q Consensus 560 V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~ 639 (1107)
+++||.... -|...+.+|...|.+++|+|+|+++++|++|.+|+|||...++++
T Consensus 136 ~~iwD~Rk~-------------------------Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~- 189 (825)
T KOG0267|consen 136 LKIWDIRKK-------------------------GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS- 189 (825)
T ss_pred ceehhhhcc-------------------------CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-
Confidence 999999854 277888999999999999999999999999999999999999998
Q ss_pred EeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 640 FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 640 ~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
+.|.+|...|.++.|.+. +-+|..|+.|++|.+||.++-++|.+.
T Consensus 190 --~ef~~~e~~v~sle~hp~----------------------e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 190 --KEFKSHEGKVQSLEFHPL----------------------EVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred --cccccccccccccccCch----------------------hhhhccCCCCceeeeeccceeEEeecc
Confidence 688889999999998844 667999999999999999999999876
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=158.06 Aligned_cols=190 Identities=14% Similarity=0.195 Sum_probs=146.0
Q ss_pred CEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeC--CCEEEEEeCCCcEEEEEcCCCeeeeeec---cC-CCe
Q 001287 48 RLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQN--QGFLISITNDNEIQVWSLESRSLACCLK---WE-SNI 120 (1107)
Q Consensus 48 ~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d--~~~L~S~s~d~~I~vWDl~s~~~~~~~~---~~-~~V 120 (1107)
..+|++-..|.|+|||..+...+ ...+|+..+..+.|..+ ..-++|++.||+|++||+++........ ++ .+-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 67999999999999999765444 66778888999999773 4568899999999999999986655443 33 467
Q ss_pred EEEEEecCCCEEEEEcC----CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEE
Q 001287 121 TAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1107)
Q Consensus 121 t~l~~~~~~~~l~~g~~----dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~ 196 (1107)
+|++.....+.+++|.+ +-.|.+||+......+.+ -+..|. +-|++|.|||. +.++|++|
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~---~~eSH~------------DDVT~lrFHP~-~pnlLlSG 184 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ---LNESHN------------DDVTQLRFHPS-DPNLLLSG 184 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh---hhhhcc------------CcceeEEecCC-CCCeEEee
Confidence 78888778889999874 667888988754322222 134444 88999999998 67779999
Q ss_pred ECCCeEEEEEccCCEE----EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC
Q 001287 197 YENALVILWDVSEAQI----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1107)
Q Consensus 197 ~~dg~V~vwdl~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG 272 (1107)
+.||.|.|||+....- .....| ...|.++.|.++.-+.|.+-+..+
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~viN~------------------------------~sSI~~igw~~~~ykrI~clTH~E 234 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVINH------------------------------GSSIHLIGWLSKKYKRIMCLTHME 234 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhhcc------------------------------cceeeeeeeecCCcceEEEEEccC
Confidence 9999999999877521 122222 556899999965556799999999
Q ss_pred cEEEEeCCCCC
Q 001287 273 DILLWNTSTTA 283 (1107)
Q Consensus 273 ~I~lWd~~~~~ 283 (1107)
++.+|+++.+.
T Consensus 235 tf~~~ele~~~ 245 (376)
T KOG1188|consen 235 TFAIYELEDGS 245 (376)
T ss_pred ceeEEEccCCC
Confidence 99999998774
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=5.4e-13 Score=156.19 Aligned_cols=202 Identities=20% Similarity=0.377 Sum_probs=152.8
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc--ceeeeCCCC-CCEEEEEE-EeCCC-EEEEEeC-CCcEEEE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISPSQ-LPYKNLEF-LQNQG-FLISITN-DNEIQVW 103 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~--~~~~~~~h~-~~V~~l~f-s~d~~-~L~S~s~-d~~I~vW 103 (1107)
...++...+.++.|++.+..++.++.|+.+.+|+.... .......+. ..+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 45678889999999999999999999999999999766 344444433 47888888 77777 5555555 8999999
Q ss_pred EcCC-Ceee-eeeccCCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 104 SLES-RSLA-CCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 104 Dl~s-~~~~-~~~~~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
|+.. .... ....|...|.+++|++++.+++.++. ++.+++|+... +.... .+.+|. ..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~------------~~v~ 202 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPLS---TLAGHT------------DPVS 202 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceEE---eeccCC------------CceE
Confidence 9998 4444 44578899999999999998888886 99999999874 23332 244444 7899
Q ss_pred EEEcccCCCCC-EEEEEECCCeEEEEEccCCEEEE--EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEe
Q 001287 181 GVLPHPNSSGN-RVLIAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1107)
Q Consensus 181 ~v~f~P~~~~~-~ll~~~~dg~V~vwdl~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1107)
++.|+| ++. .+++++.|+.|++||...+.... ..+| ...+ -.+|
T Consensus 203 ~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~------------------------------~~~~-~~~~ 249 (466)
T COG2319 203 SLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH------------------------------SDSV-VSSF 249 (466)
T ss_pred EEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCC------------------------------Ccce-eEeE
Confidence 999987 454 44555899999999988666554 3333 2221 1154
Q ss_pred ecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 258 ASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 258 ~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
++++..+++++.|+.+++|+....
T Consensus 250 -~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 250 -SPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred -CCCCCEEEEecCCCcEEEeeecCC
Confidence 488889999999999999998643
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1e-14 Score=149.26 Aligned_cols=162 Identities=10% Similarity=0.167 Sum_probs=111.0
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~ 569 (1107)
.+.+.|++|++|..-|.+-|+|+.+-.+...+.... ...|..|.|+..|++|++-+.|..||.|++..-.
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeech----------heeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 466778899999999999999999887764443321 1368899999999999999999999999987432
Q ss_pred CCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeEEEEeecCCCCC
Q 001287 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF-ECGRVAVLDMNLLSVLFFTDDISGSS 648 (1107)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs-~dg~V~iwd~~~~~~~~~~~~~~~h~ 648 (1107)
.++... ..+...+++++. ...+=.+++||.+|.+++.|+ ..-.++||.-..|.++ +.+.|..
T Consensus 230 ~~~r~~-e~e~~~K~qDvV-------------Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV---KILhG~k 292 (405)
T KOG1273|consen 230 DEGRDG-EVEPEHKLQDVV-------------NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV---KILHGTK 292 (405)
T ss_pred ccCccC-CcChhHHHHHHH-------------hhhhhhheeecCCccEEEeccccceeEEEEecCCccee---eeecCCc
Confidence 110000 000000011110 012234688999999998886 3456999999999988 5666655
Q ss_pred -CceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 649 -SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 649 -~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
.....+.|.+ -...+++- ..|.|++|....
T Consensus 293 gE~l~DV~whp----------------------~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 293 GEELLDVNWHP----------------------VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hhheeeccccc----------------------ceeeeeec-cCCceEEEEeec
Confidence 5566677773 34456555 788999998753
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.5e-17 Score=182.36 Aligned_cols=196 Identities=19% Similarity=0.303 Sum_probs=167.3
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC
Q 001287 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~ 106 (1107)
+.-.+||.+.|.|+.|++...+||.|+.+|.|++||+. ...+..+.+|...+..|.|+|-+.|.++++.|..+++||+.
T Consensus 63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence 33458999999999999999999999999999999995 45566899999999999999999999999999999999999
Q ss_pred CCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 107 SRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 107 s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
...+.+.+ +|...|.++.|+|+++|++.|++|.+++||+... |++... |+.|+ +.|.++.||
T Consensus 143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a--gk~~~e---f~~~e------------~~v~sle~h 205 (825)
T KOG0267|consen 143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA--GKLSKE---FKSHE------------GKVQSLEFH 205 (825)
T ss_pred ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc--cccccc---ccccc------------ccccccccC
Confidence 77666666 6888899999999999999999999999999864 666643 67776 789999999
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
|. .-++..|+.|++|++||+++-.++-..+. +...|.|+.|. |+|..+
T Consensus 206 p~--e~Lla~Gs~d~tv~f~dletfe~I~s~~~-----------------------------~~~~v~~~~fn-~~~~~~ 253 (825)
T KOG0267|consen 206 PL--EVLLAPGSSDRTVRFWDLETFEVISSGKP-----------------------------ETDGVRSLAFN-PDGKIV 253 (825)
T ss_pred ch--hhhhccCCCCceeeeeccceeEEeeccCC-----------------------------ccCCceeeeec-CCceee
Confidence 95 44588999999999999998776643321 15578899975 999999
Q ss_pred EEEEcCC
Q 001287 266 AVGYIDG 272 (1107)
Q Consensus 266 ~sg~~dG 272 (1107)
++|....
T Consensus 254 ~~G~q~s 260 (825)
T KOG0267|consen 254 LSGEQIS 260 (825)
T ss_pred ecCchhh
Confidence 9887654
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=2.7e-14 Score=157.72 Aligned_cols=153 Identities=13% Similarity=0.191 Sum_probs=111.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-----CCcceeeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEc
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGG-----DGIEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~-----~~~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl 105 (1107)
-|+.+...-|||+-++. .|.+-|..+ ....+-.+..|..-|+.+.|+| +..+|+++|.|..|+||.+
T Consensus 37 n~I~aS~~flAFn~e~~-------G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~l 109 (1012)
T KOG1445|consen 37 NGIHASADFLAFNIEGE-------GGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKL 109 (1012)
T ss_pred CCcccccceEEEeecCC-------CceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEec
Confidence 35666666677765432 123334333 2234447888999999999999 4578999999999999999
Q ss_pred CCCee--e----eeeccC-CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCC
Q 001287 106 ESRSL--A----CCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1107)
Q Consensus 106 ~s~~~--~----~~~~~~-~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1107)
..+.- + ..+++. -.|.|+.|+|..+-++.....|+++|||+.... .. +.+.+|. +-
T Consensus 110 p~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk--~~---~el~~h~------------d~ 172 (1012)
T KOG1445|consen 110 PRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQK--TA---VELSGHT------------DK 172 (1012)
T ss_pred CCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCc--ee---ecccCCc------------hh
Confidence 85421 1 111222 368999999998877777788999999988632 21 3356665 77
Q ss_pred eEEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 179 V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
|.+..| +.+|.+|++++.|..|+|||.+..
T Consensus 173 vQSa~W--seDG~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 173 VQSADW--SEDGKLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred hhcccc--ccCCceEeeecCCcceEEeCCccC
Confidence 999999 559999999999999999998764
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=6.6e-14 Score=155.46 Aligned_cols=148 Identities=16% Similarity=0.246 Sum_probs=117.8
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeec
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 156 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~ 156 (1107)
.|..++|-|||..|+.+. ++.+.++|...|.++..+ .|...|.|++++.+|+++++|+.|..|.+|.-.. +|.+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee--
Confidence 799999999999888775 677999999999888877 7999999999999999999999999999998442 24433
Q ss_pred ceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCC
Q 001287 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1107)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 236 (1107)
| .|. +.|.|+.|+|. ..+|++++-+.. -+|......+..+..
T Consensus 90 -Y---SH~------------D~IQCMsFNP~--~h~LasCsLsdF-glWS~~qK~V~K~ks------------------- 131 (1081)
T KOG1538|consen 90 -Y---SHN------------DAIQCMSFNPI--THQLASCSLSDF-GLWSPEQKSVSKHKS------------------- 131 (1081)
T ss_pred -e---ccC------------CeeeEeecCch--HHHhhhcchhhc-cccChhhhhHHhhhh-------------------
Confidence 2 233 78999999995 444666665544 688877665543321
Q ss_pred ccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
..+|.+.+|. .||++++-|..+|+|.+-+..
T Consensus 132 ------------s~R~~~CsWt-nDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 132 ------------SSRIICCSWT-NDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred ------------heeEEEeeec-CCCcEEEEeccCceEEeecCC
Confidence 4578889997 999999999999999987554
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.65 E-value=7.2e-15 Score=158.41 Aligned_cols=125 Identities=16% Similarity=0.211 Sum_probs=99.0
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCC-CeEEEeccCceEEEEEecCCCCCccce
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~-~~Lasg~~dg~V~vw~~~~~~~~~~~~ 575 (1107)
+|.+++.+|+|.+||+++..... .-...|.++...|+|||.. .+|++.+.|..|.+||......
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~----------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----- 243 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIF----------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS----- 243 (673)
T ss_pred eeEeeccCCeEEEEeccCCCccc----------chhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-----
Confidence 78889999999999999776431 1146899999999999965 4688999999999999986522
Q ss_pred eeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEE
Q 001287 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMT 655 (1107)
Q Consensus 576 ~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 655 (1107)
..-.....+.++|+|+++|.+||.|+..|.|..||++....-. ..+..|...|++++
T Consensus 244 ---------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv--~v~sah~~sVt~va 300 (673)
T KOG4378|consen 244 ---------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV--AVRSAHDASVTRVA 300 (673)
T ss_pred ---------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc--eEeeecccceeEEE
Confidence 1112345688999999999999999999999999998754221 23456999999999
Q ss_pred Eeec
Q 001287 656 WTEF 659 (1107)
Q Consensus 656 fs~~ 659 (1107)
|-+.
T Consensus 301 fq~s 304 (673)
T KOG4378|consen 301 FQPS 304 (673)
T ss_pred eeec
Confidence 9854
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3e-14 Score=157.19 Aligned_cols=204 Identities=16% Similarity=0.210 Sum_probs=144.7
Q ss_pred ceeeeec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCC-EEEEEeCCCcEEE-
Q 001287 26 LRIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQV- 102 (1107)
Q Consensus 26 ~~~~~~~-G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~v- 102 (1107)
.+..+-| ||.+.|.|+..+|.|.+||+|+.||+|+||.+.+..++-...-.+.|.||+|+|.+. -++.++.+..+.|
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 3445555 999999999999999999999999999999998887776666677899999999653 2333333333333
Q ss_pred --------------------------------EEcCCC-----eeeeeeccCCCeEEEEEecCCCEEEEEcCC---CcEE
Q 001287 103 --------------------------------WSLESR-----SLACCLKWESNITAFSVISGSHFMYIGDEN---GLMS 142 (1107)
Q Consensus 103 --------------------------------WDl~s~-----~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~d---g~V~ 142 (1107)
|.-.+. .+...+.|...|..+.|+..|+||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 332211 112334667789999999999999988754 3455
Q ss_pred EEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-eCCccc
Q 001287 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDL 221 (1107)
Q Consensus 143 vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~ 221 (1107)
|..+.. ...|.||+... +.|.++.|||. ..+|++++. ..|+|||+....++.. ...
T Consensus 550 iHQLSK---~~sQ~PF~ksk--------------G~vq~v~FHPs--~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--- 606 (733)
T KOG0650|consen 550 IHQLSK---RKSQSPFRKSK--------------GLVQRVKFHPS--KPYLFVATQ-RSVRIYDLSKQELVKKLLTG--- 606 (733)
T ss_pred EEeccc---ccccCchhhcC--------------CceeEEEecCC--CceEEEEec-cceEEEehhHHHHHHHHhcC---
Confidence 555542 33344453331 66999999996 344666554 4569999988654321 111
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.+.|.+++-+ |.|..|+.|+.|+.+..+|+.
T Consensus 607 ---------------------------~kwiS~msih-p~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 607 ---------------------------SKWISSMSIH-PNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred ---------------------------Ceeeeeeeec-CCCCeEEEecCCCeeEEEEcc
Confidence 5567778854 999999999999999999986
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=8.4e-15 Score=156.92 Aligned_cols=202 Identities=15% Similarity=0.250 Sum_probs=158.1
Q ss_pred CCCCCeEEEEEc-------CCCCEEEEEECCCcEEEEeCCCcce---e-e------------------eCCCCCCEEEEE
Q 001287 33 GIPATASILAFD-------HIQRLLAIATLDGRIKVIGGDGIEG---L-L------------------ISPSQLPYKNLE 83 (1107)
Q Consensus 33 G~~~~i~~lafs-------p~~~~LA~Gs~dg~I~iw~~~~~~~---~-~------------------~~~h~~~V~~l~ 83 (1107)
=+|.-+-|+++- -.|.++|+|+-|..|.|||++-... . . ..+|+..|-+|.
T Consensus 171 ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls 250 (463)
T KOG0270|consen 171 ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS 250 (463)
T ss_pred eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence 466666777763 2467999999999999999853211 1 1 225888999999
Q ss_pred EEeC-CCEEEEEeCCCcEEEEEcCCCeeeeeec-cCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceee
Q 001287 84 FLQN-QGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNI 160 (1107)
Q Consensus 84 fs~d-~~~L~S~s~d~~I~vWDl~s~~~~~~~~-~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i 160 (1107)
|..+ ...|+|+|.|.+|++||+.++++..++. |.+.|.++.|+|.. .+|++|+.|++|.+.+.... ..... .+++
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-~~s~~-~wk~ 328 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-SNSGK-EWKF 328 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc-cccCc-eEEe
Confidence 9874 4679999999999999999999999886 77899999999876 58899999999999887531 11111 1334
Q ss_pred cccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC-EEEEE-eCCccccccccccCCCCCCCCcc
Q 001287 161 SADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFV-GGGKDLQLKDGVVDSPSEGDSTF 238 (1107)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~-~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 238 (1107)
. +.|..++|+|.... .++++..||+|+-+|++.. ++++. ..|
T Consensus 329 ~---------------g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~vwt~~AH-------------------- 372 (463)
T KOG0270|consen 329 D---------------GEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPVWTLKAH-------------------- 372 (463)
T ss_pred c---------------cceEEEEecCCCce-eEEEecCCceEEeeecCCCCCceeEEEec--------------------
Confidence 4 66999999997544 4899999999999999885 55443 333
Q ss_pred ccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 239 ~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
..+|+++|++...-.++++++.|+.+++|++...
T Consensus 373 ----------d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 373 ----------DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred ----------cCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 7899999987666778999999999999999765
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=152.25 Aligned_cols=232 Identities=16% Similarity=0.197 Sum_probs=160.6
Q ss_pred cccccccceeeee-cCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCccee----eeCCCCCCEEEEEEEeC-CCEE
Q 001287 19 LTAADLNLRIAVH-YGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQN-QGFL 91 (1107)
Q Consensus 19 l~~~~~~~~~~~~-~G~~~~i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~~~~----~~~~h~~~V~~l~fs~d-~~~L 91 (1107)
+...+-..|..+. -||...-..|+|||. -..|++|.+-+.|++|........ -+.+|+..|..|+|||. .+.+
T Consensus 194 ~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vf 273 (440)
T KOG0302|consen 194 LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVF 273 (440)
T ss_pred ccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceE
Confidence 3333344554444 488888899999994 345889988999999987443222 34459999999999995 4688
Q ss_pred EEEeCCCcEEEEEcCCC---eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCc-eeecceeeccccccc
Q 001287 92 ISITNDNEIQVWSLESR---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK-LFQLPYNISADALSE 167 (1107)
Q Consensus 92 ~S~s~d~~I~vWDl~s~---~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~-l~~~~~~i~~~~~~~ 167 (1107)
+|||-|++|+|||++++ ..+....|.+.|+.++|+....+|++|+.||+++||++..-... .+ -.+.-|.
T Consensus 274 aScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV---A~fk~Hk--- 347 (440)
T KOG0302|consen 274 ASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV---ATFKYHK--- 347 (440)
T ss_pred EeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc---eeEEecc---
Confidence 99999999999999998 34455678899999999999899999999999999998763322 22 2244454
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
.+|++|.|||..++. |++++.|..|.+||+.-..-..-......+. +.+-|+.-+ .-+.
T Consensus 348 ---------~pItsieW~p~e~s~-iaasg~D~QitiWDlsvE~D~ee~~~~a~~~---L~dlPpQLL--------FVHq 406 (440)
T KOG0302|consen 348 ---------APITSIEWHPHEDSV-IAASGEDNQITIWDLSVEADEEEIDQEAAEG---LQDLPPQLL--------FVHQ 406 (440)
T ss_pred ---------CCeeEEEeccccCce-EEeccCCCcEEEEEeeccCChhhhccccccc---hhcCCceeE--------EEec
Confidence 889999999986665 9999999999999986532200000000000 000000000 0001
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCcEEEEe
Q 001287 248 EEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1107)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd 278 (1107)
-.+.|.-+.|+.....+|++.+.|| +.||.
T Consensus 407 GQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 407 GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 1667788889855567888888888 44543
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.62 E-value=5e-14 Score=151.39 Aligned_cols=154 Identities=15% Similarity=0.053 Sum_probs=103.4
Q ss_pred CcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccc
Q 001287 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1107)
Q Consensus 495 ~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~ 574 (1107)
..++|||+.|++.+|||+..-.-+... -+....|+.+|.+..|||++..|++.+.|..|+||+-+--...
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp-------~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~--- 404 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASP-------FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK--- 404 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCc-------ceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc---
Confidence 347999999999999998743322100 0235589999999999999999999999999999997511000
Q ss_pred eeeccCcCcceecccCCcceeEEEEeecCc------CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCC
Q 001287 575 LFVLETKSEVHALPEGKISLCRAVFSLVNS------PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 648 (1107)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~------~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~ 648 (1107)
..+.. ...|+. .....+|.|+..++++|..-..|-|+|-.++++++..+- ...
T Consensus 405 ------------------~~p~~-~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~--P~~ 463 (498)
T KOG4328|consen 405 ------------------DEPLG-TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD--PES 463 (498)
T ss_pred ------------------CCccc-eeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC--ccc
Confidence 00111 112211 123457999999999999988999999999998754322 122
Q ss_pred CceEEE-EEeecccCccccCCCCCCCCCCCCCCCcc-EEEEEcCCceEEEEeCCC
Q 001287 649 SPIISM-TWTEFKNTHSLAKNPNHSEREVPVNPAEE-VIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 649 ~~V~~l-~fs~~~~~~~~~~~p~~~~~~~~~~~~~~-~L~s~s~Dg~v~v~d~~~ 701 (1107)
..|.++ .|. |-+. +++.++.-|.|+||-.+.
T Consensus 464 ~tI~~vn~~H----------------------P~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 464 STIPSVNEFH----------------------PMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccccceeec----------------------ccccceeccCCccceEEEEecCC
Confidence 344444 344 3355 455555568899987543
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.62 E-value=8.6e-14 Score=143.70 Aligned_cols=167 Identities=17% Similarity=0.267 Sum_probs=128.9
Q ss_pred eCCCCCCEEEEEEEe----CCCEEEEEeCCCcEEEEEcCCC---eeeeee---ccCCCeEEEEEecC----CCEEEEEcC
Q 001287 72 ISPSQLPYKNLEFLQ----NQGFLISITNDNEIQVWSLESR---SLACCL---KWESNITAFSVISG----SHFMYIGDE 137 (1107)
Q Consensus 72 ~~~h~~~V~~l~fs~----d~~~L~S~s~d~~I~vWDl~s~---~~~~~~---~~~~~Vt~l~~~~~----~~~l~~g~~ 137 (1107)
.-.|+.+|-.++|.+ +...+++....+.+.++..... +++.++ .++.....++|.-+ ..++++|+.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 445778999999984 3445666666788999987654 344554 24556666777644 468999999
Q ss_pred CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeC
Q 001287 138 NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 138 dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g 217 (1107)
-|.|+|.++.. +++... +.+|. .+|..+.|+|. ..+++++++.|-.|++||+++..++.++|
T Consensus 114 ~GvIrVid~~~--~~~~~~---~~ghG------------~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 114 LGVIRVIDVVS--GQCSKN---YRGHG------------GSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred eeEEEEEecch--hhhccc---eeccC------------ccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 99999998775 344432 44555 78999999997 67789999999999999999999988876
Q ss_pred CccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 218 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
.-+ .++..|.++.|. .+|.+|++++.|.+|++|+++..+
T Consensus 176 G~e--------------------------gHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 176 GVE--------------------------GHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred ccc--------------------------cccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhH
Confidence 511 127889999986 999999999999999999998553
No 161
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=1e-13 Score=164.54 Aligned_cols=183 Identities=13% Similarity=0.190 Sum_probs=134.5
Q ss_pred EeCCCcceeeeCCCCCCEEEEEEEeCC-CEEEEEeCCCcEEEEEcCCCe-------eeeeec-cCCCeEEEEEecCCCEE
Q 001287 62 IGGDGIEGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRS-------LACCLK-WESNITAFSVISGSHFM 132 (1107)
Q Consensus 62 w~~~~~~~~~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I~vWDl~s~~-------~~~~~~-~~~~Vt~l~~~~~~~~l 132 (1107)
|+..+..+..+.+|...|..++.++.. .+++|+|.||+|+|||...-. ...++. ..++++++.+.+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 888888888899999999999998754 899999999999999985531 112233 45789999999999999
Q ss_pred EEEcCCCcEEEEEeecCC-CceeecceeecccccccccCCCCCCCCCeEEE-EcccCCCCC-EEEEEECCCeEEEEEccC
Q 001287 133 YIGDENGLMSVIKYDADE-GKLFQLPYNISADALSEKAGFPLLSHQPVVGV-LPHPNSSGN-RVLIAYENALVILWDVSE 209 (1107)
Q Consensus 133 ~~g~~dg~V~vw~~d~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v-~f~P~~~~~-~ll~~~~dg~V~vwdl~~ 209 (1107)
|+|+.||.|.+.+++... .+.....-+++... ..+.|+++ +|.- ..+. .|+.+...+.|..||+..
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~----------~~g~vv~m~a~~~-~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK----------KDGVVVSMHAFTA-IVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeeccccc----------CCCceEEeecccc-cccceeEEEEEeccceEEecchh
Confidence 999999999999988621 11111112222221 11334444 3422 2344 678888899999999988
Q ss_pred CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
....+...+ . .+.+.|+++|- +|.+.+++.|...|.+.+||+.-..
T Consensus 1183 ~~~~w~lk~-------~--------------------~~hG~vTSi~i-dp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1183 RHDAWRLKN-------Q--------------------LRHGLVTSIVI-DPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred hhhHHhhhc-------C--------------------ccccceeEEEe-cCCceEEEEecCCceEEEEEeecCc
Confidence 776665543 1 12778999994 6999999999999999999998653
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=5.2e-14 Score=147.42 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=134.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc--------ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
.||.+-|.++.|+.++++||+|+.|-.++||+.+.. ..+...+|...|-||+|.-...+|+|+..+++|..-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 477788999999999999999999999999997532 223445677899999999888999999999999999
Q ss_pred EcCCCeeeeeeccC---CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 104 SLESRSLACCLKWE---SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 104 Dl~s~~~~~~~~~~---~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
|+++.+.+....+. +.|..+..+|..+.+++.+.+|.|.+|+......... ++ ++... .....
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~--~~-~~AN~-----------~~~F~ 198 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS--LV-LPANS-----------GKNFY 198 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--ee-eecCC-----------Cccce
Confidence 99999998888766 4899999999999999999999999999764321111 11 22221 15688
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCE
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
++.|+|. ...+|++++..+-+-|||.....
T Consensus 199 t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 199 TAEFHPE-TPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred eeeecCC-CceeEEeccccCCCCceeecccc
Confidence 9999997 56679999999999999987653
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=7.4e-15 Score=153.95 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=124.9
Q ss_pred cccCCCCc-EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeC-CCeEEEeccCceEEEEEec
Q 001287 489 TKCHSVDR-VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NSSLAVGNEFGLVYIYNLN 566 (1107)
Q Consensus 489 ~~~s~~~~-~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd-~~~Lasg~~dg~V~vw~~~ 566 (1107)
+.++|-.. .++||---+.|++|...++... +.+..+.+|..+|-.|+|||. ...|++++.||+|+|||++
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~--------vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR 288 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK--------VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR 288 (440)
T ss_pred eecccccccccccCccccceEeeeeccCcee--------ecCccccccccchhhhccCCccCceEEeeecCceEEEEEec
Confidence 34555222 3677766678999999887754 112346789999999999995 6789999999999999998
Q ss_pred CCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCC
Q 001287 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1107)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~ 646 (1107)
..+.. .|+ ..+.|.+.|..+.|+..-.+||+|++||+++|||+++-+.-..+..+.-
T Consensus 289 s~~~~----------------------~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 289 SGPKK----------------------AAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY 345 (440)
T ss_pred CCCcc----------------------cee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe
Confidence 87432 133 3389999999999999888999999999999999976433222235566
Q ss_pred CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
|..||+++.|.+.. ...+++++.|.+|++||..
T Consensus 346 Hk~pItsieW~p~e---------------------~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 346 HKAPITSIEWHPHE---------------------DSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ccCCeeEEEecccc---------------------CceEEeccCCCcEEEEEee
Confidence 99999999999653 4569999999999999975
No 164
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-11 Score=143.40 Aligned_cols=339 Identities=11% Similarity=0.088 Sum_probs=194.2
Q ss_pred CCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEe
Q 001287 486 VPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNL 565 (1107)
Q Consensus 486 ~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~ 565 (1107)
+.+.+++|+++++|+|..||.|.+|.-.+.... ......+.-|...|++++|+++|.+|.+|+..|.+-+|.+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~-------~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDD-------SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccc-------cccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 456689999999999999999999975542100 0011236678889999999999999999999999999999
Q ss_pred cCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCC
Q 001287 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1107)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~ 645 (1107)
.+... .-+-...++|..+.+|||+.+.++...|..|.+....+........-+.
T Consensus 281 ~T~~k--------------------------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 281 ETGKK--------------------------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred cCCCc--------------------------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 88732 2234568899999999999999999999999998876654442111111
Q ss_pred C--------CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCCCcccccce
Q 001287 646 G--------SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVI 717 (1107)
Q Consensus 646 ~--------h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~~~~~~~~~ 717 (1107)
. ..+-.+.+.++ |.-+.++-.+..|+|..+|.-+-+.|..
T Consensus 335 ~~~~~~k~~~~~l~t~~~id----------------------pr~~~~vln~~~g~vQ~ydl~td~~i~~---------- 382 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSID----------------------PRTNSLVLNGHPGHVQFYDLYTDSTIYK---------- 382 (792)
T ss_pred CCCccccccccccceeEEEc----------------------CCCCceeecCCCceEEEEeccccceeee----------
Confidence 1 12222333333 3344466777888888888765444322
Q ss_pred eeEEEEecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecCeeEEEecc
Q 001287 718 AISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRK 797 (1107)
Q Consensus 718 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~~l~v~sl~ 797 (1107)
|.+.+....-....+. ..++.+-.+.+ . +-....+.-.+...-.-.|-+||.|.-+
T Consensus 383 ---~~v~~~n~~~~~~n~~--------------v~itav~~~~~-g------s~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 383 ---LQVCDENYSDGDVNIQ--------------VGITAVARSRF-G------SWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ---EEEEeecccCCcceeE--------------Eeeeeehhhcc-c------eEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 2222111100000000 00000000000 0 0000000000000011124588899666
Q ss_pred ccccccceeeeeecCC-CcceeeeeeecCCceeEEEEEeecCcEEEeecCCccc-cccccccceeec-eecCcccccccc
Q 001287 798 SVIQGNNKTVQKVKHK-NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLEL-VMESSLMSILRW-NFKANMDKTISA 874 (1107)
Q Consensus 798 ~~~~g~~~~i~k~~~~-~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 874 (1107)
.-.++-.. --++..+ ..|.-+.+|..-+..-+.+..-.||.++||.+-+-+= ..+.+.-.|... +||--.+.+.||
T Consensus 439 ~~~kt~~L-~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 439 PNSKTFIL-NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred CCcceeEE-EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 53222221 2233433 4555566666644444777787899999999944332 233333222221 244445778899
Q ss_pred c-CCcEEEEcCceeEEEEeecCCCceecccCCcceeehhhHHHHHhh
Q 001287 875 D-NGQITLANGSEVAFVNLLAGENEFSILESSPCLHDKVLEAAAAAA 920 (1107)
Q Consensus 875 s-~Gq~~l~~~~e~~~~s~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 920 (1107)
| ||.++-++-++...+.-+. + ++.|-|+....+.+.++-.
T Consensus 518 s~dGslla~s~~~~Itiwd~~--~----~~~l~~~~~~~~~~~~~~~ 558 (792)
T KOG1963|consen 518 SQDGSLLAVSFDDTITIWDYD--T----KNELLCTEGSRNWPIAELL 558 (792)
T ss_pred cCCCcEEEEecCCEEEEecCC--C----hhhhhccccccccchHhHh
Confidence 9 9976666667755542222 1 2556677777666666544
No 165
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=5.5e-14 Score=140.96 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=64.3
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec--cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~--~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
.+.+|.+.|+++.|-.+ .+|+++..-|.|++|++++.+-+..+. +...|+.+...|+ ..+.+-+.|+.+..|+++-
T Consensus 9 vLRp~~~~v~s~~fqa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccc-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 44589999999999988 569999999999999999998776664 5567888888887 6778888999999999874
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.58 E-value=5.2e-12 Score=140.69 Aligned_cols=197 Identities=17% Similarity=0.238 Sum_probs=140.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeC-CCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee-----
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL----- 110 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~----- 110 (1107)
.|..++|-|||..|.++. +.++.|||. ++...-.+.+|...|.+++|+.||.+++|++.|..|.+|+-.-..+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 688899999999998886 578999998 5666668999999999999999999999999999999998643221
Q ss_pred ---eeeecc------------------------------CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecc
Q 001287 111 ---ACCLKW------------------------------ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1107)
Q Consensus 111 ---~~~~~~------------------------------~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~ 157 (1107)
+..+.+ ..+|.+++|..+|++++.|-.+|+|.|-+-..+....
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~---- 168 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVK---- 168 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceE----
Confidence 111110 1268889999999999999999999887533221111
Q ss_pred eeecccccccccCCCCCCCCCeEEEEcccCCC---CCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCC
Q 001287 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSS---GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 234 (1107)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~---~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~ 234 (1107)
|. -|.....+|.+|+|+|... ...+++..-+.++..+.++...+-.-+
T Consensus 169 --I~---------Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r------------------ 219 (1081)
T KOG1538|consen 169 --IE---------RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR------------------ 219 (1081)
T ss_pred --Ee---------CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc------------------
Confidence 11 1222347899999999632 123555555555555555443322111
Q ss_pred CCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 235 ~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.-.-.-.|+.++ ++|.+++.|+.|+.+.+|-.+
T Consensus 220 ------------~L~FdP~CisYf-~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 220 ------------ALNFDPCCISYF-TNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred ------------cCCCCchhheec-cCCcEEEEccCCCceEEEeec
Confidence 003345678887 999999999999999998764
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.57 E-value=6.6e-13 Score=141.04 Aligned_cols=170 Identities=17% Similarity=0.170 Sum_probs=133.6
Q ss_pred ceeeeecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCC----c---ce---eeeCCCCCCEEEEEEEeCCCEEEEE
Q 001287 26 LRIAVHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDG----I---EG---LLISPSQLPYKNLEFLQNQGFLISI 94 (1107)
Q Consensus 26 ~~~~~~~G~~~~i~~lafsp~~~-~LA~Gs~dg~I~iw~~~~----~---~~---~~~~~h~~~V~~l~fs~d~~~L~S~ 94 (1107)
++...| -+..+..+.|.++.. .||+|+.|..|+||.... . .+ -.+..|+..|.++.|+|+|..|+|+
T Consensus 6 ~ei~wH--~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg 83 (434)
T KOG1009|consen 6 IEISWH--DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASG 83 (434)
T ss_pred eEEEec--CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeec
Confidence 455566 456688899998887 999999999999998621 1 11 1566799999999999999999999
Q ss_pred eCCCcEEEEEcC--------C-----C---eeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecc
Q 001287 95 TNDNEIQVWSLE--------S-----R---SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1107)
Q Consensus 95 s~d~~I~vWDl~--------s-----~---~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~ 157 (1107)
+.+++|.+|-.. + . .....+ .|...|..++|+++++++++|+-|.++++|++.. |.+...
T Consensus 84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~--G~l~~~- 160 (434)
T KOG1009|consen 84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA--GQLLAI- 160 (434)
T ss_pred CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc--ceeEee-
Confidence 999999999876 2 1 112222 5778999999999999999999999999999875 566543
Q ss_pred eeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
+..|. ..|..++|.| .++++++-+.|...+.+++...+.++..
T Consensus 161 --~~dh~------------~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 161 --LDDHE------------HYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred --ccccc------------cccceeecch--hhhhhhhhccCcccceeeeeeeeeeeee
Confidence 55555 7799999988 5666888888887777777766665543
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.57 E-value=5.3e-13 Score=137.45 Aligned_cols=200 Identities=12% Similarity=0.147 Sum_probs=143.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCcc-------eeeeC-------CCCCCEEEEEEE-------eCCCEEEEEeCCC
Q 001287 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIE-------GLLIS-------PSQLPYKNLEFL-------QNQGFLISITNDN 98 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-------~~~~~-------~h~~~V~~l~fs-------~d~~~L~S~s~d~ 98 (1107)
.+.|+|||..|.+-+.|..+.+|+++... .+... .....|..-+|- |+..++++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 36899999999999999999999985321 11111 123345555553 4556778888899
Q ss_pred cEEEEEcCCCeeeeeec---cCC---CeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCC
Q 001287 99 EIQVWSLESRSLACCLK---WES---NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1107)
Q Consensus 99 ~I~vWDl~s~~~~~~~~---~~~---~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1107)
-|++||.-+|++.+++. |.. .-.+++|+|++.+|+.|.. ..|+|++.......... |....+. .
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~v--y~t~~~~---k---- 203 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPV--YTTVTKG---K---- 203 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcc--hhhhhcc---c----
Confidence 99999999999887773 333 3468999999999999865 45888887432222221 2111110 0
Q ss_pred CCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
....+-+.+++|+|. +.+.+++++....+-|+.-...+...+ .|| .+.
T Consensus 204 ~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh------------------------------~gG 252 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH------------------------------GGG 252 (406)
T ss_pred ccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeeccc------------------------------CCC
Confidence 011256899999998 455599999999999999888776554 445 788
Q ss_pred eeEEEeecCCCCEEEEEEc-CCcEEEEeCCC
Q 001287 252 ISALCWASSSGSILAVGYI-DGDILLWNTST 281 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~-dG~I~lWd~~~ 281 (1107)
||.++|. ++|+.|++|.. |-.|..||+..
T Consensus 253 vThL~~~-edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 253 VTHLQWC-EDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeEEec-cCcCeecccccCCCeEEEEeehh
Confidence 9999996 99999999986 77899999963
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=8e-14 Score=139.80 Aligned_cols=154 Identities=25% Similarity=0.293 Sum_probs=121.2
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeecc--ceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccc
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDA--EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~--~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~ 574 (1107)
++++|.++|.|-+||++.+... ..++. ++. .....|..+|.++.|.+.-..=++|+.+..+..|.++......
T Consensus 167 lllaGyEsghvv~wd~S~~~~~--~~~~~~~kv~-~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl-- 241 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKI--IQLPQSSKVE-SPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL-- 241 (323)
T ss_pred EEEEeccCCeEEEEEccCCcee--eccccccccc-cchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc--
Confidence 7889999999999999987422 22222 111 1356889999999999876666889999999999987753211
Q ss_pred eeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEE
Q 001287 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1107)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l 654 (1107)
+........+..|..+.+-||++.+|+++.|+.|+||..++...+ ..+.-|+..|.++
T Consensus 242 -------------------q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL---AVLkyHsagvn~v 299 (323)
T KOG0322|consen 242 -------------------QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL---AVLKYHSAGVNAV 299 (323)
T ss_pred -------------------cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch---hhhhhhhcceeEE
Confidence 112223344566899999999999999999999999999998887 4667799999999
Q ss_pred EEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 655 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 655 ~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
+|+ |+-++++++++|++|.+|+.
T Consensus 300 Afs----------------------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFS----------------------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeC----------------------CCCchhhhccCCceEEeeec
Confidence 999 55678999999999999984
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.56 E-value=3.1e-11 Score=141.25 Aligned_cols=353 Identities=19% Similarity=0.363 Sum_probs=237.3
Q ss_pred EEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe-eeeee-ccC-CCeEEEEE-e
Q 001287 51 AIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCL-KWE-SNITAFSV-I 126 (1107)
Q Consensus 51 A~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~-~~~~~-~~~-~~Vt~l~~-~ 126 (1107)
.....+..+.++.... .....|...+..+.|.+++..++..+.|+.+.+|+...+. .+..+ ... ..+..+.+ .
T Consensus 43 ~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 43 LALLSDSLVSLPDLSS---LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119 (466)
T ss_pred Eeecccccccccccch---heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEEC
Confidence 3333344444444333 3566789999999999999999999999999999999986 44444 323 36777777 7
Q ss_pred cCCC-EEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CCeEE
Q 001287 127 SGSH-FMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVI 203 (1107)
Q Consensus 127 ~~~~-~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~ 203 (1107)
+++. +++..+ .++.+.+|++... .... ..+..|. ..|..+.|+| ++..++.+.. ++.++
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~---~~~~~~~------------~~v~~~~~~~--~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTP-GKLI---RTLEGHS------------ESVTSLAFSP--DGKLLASGSSLDGTIK 181 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCC-CeEE---EEEecCc------------ccEEEEEECC--CCCEEEecCCCCCceE
Confidence 7776 444434 4899999998741 1222 2245554 6789999988 4556777775 99999
Q ss_pred EEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEEEEEcCCcEEEEeCCC
Q 001287 204 LWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 204 vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~~dG~I~lWd~~~ 281 (1107)
+|++.....+. ..+| ...|.++.|. |++. .+++++.|+.|++||...
T Consensus 182 ~~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 182 LWDLRTGKPLSTLAGH------------------------------TDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred EEEcCCCceEEeeccC------------------------------CCceEEEEEc-CCcceEEEEecCCCcEEEEECCC
Confidence 99999855443 3333 7789999987 9998 555559999999996642
Q ss_pred CCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceee
Q 001287 282 TASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVS 361 (1107)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~ 361 (1107)
+. .... .+ .+..
T Consensus 231 ~~------------~~~~------------~~-------------------~~~~------------------------- 242 (466)
T COG2319 231 GK------------LLRS------------TL-------------------SGHS------------------------- 242 (466)
T ss_pred Cc------------EEee------------ec-------------------CCCC-------------------------
Confidence 20 0000 00 0000
Q ss_pred eeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEE
Q 001287 362 RVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAE 441 (1107)
Q Consensus 362 ~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~ 441 (1107)
..
T Consensus 243 ------------------------------------~~------------------------------------------ 244 (466)
T COG2319 243 ------------------------------------DS------------------------------------------ 244 (466)
T ss_pred ------------------------------------cc------------------------------------------
Confidence 00
Q ss_pred EEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEE
Q 001287 442 FMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLIC 521 (1107)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~ 521 (1107)
. ...+++++.++++++.|+.+++||....... +
T Consensus 245 --------------------------------------------~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~- 277 (466)
T COG2319 245 --------------------------------------------V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-L- 277 (466)
T ss_pred --------------------------------------------e-eEeECCCCCEEEEecCCCcEEEeeecCCCcE-E-
Confidence 0 0013344457789999999999999866631 1
Q ss_pred eeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEE--E
Q 001287 522 ALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAV--F 599 (1107)
Q Consensus 522 ~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~ 599 (1107)
..+.+|...|.++.|+|++..+++++.|+.+.+|+...... ... .
T Consensus 278 --------~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------------------~~~~~~ 324 (466)
T COG2319 278 --------RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-------------------------LSSLTL 324 (466)
T ss_pred --------EEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-------------------------EEEeee
Confidence 11246788999999999999988899899999997666421 122 2
Q ss_pred eecCcCEEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCC
Q 001287 600 SLVNSPVRALQFTSSGAKLAVG-FECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPV 678 (1107)
Q Consensus 600 ~~h~~~Vt~la~sp~~~~la~G-s~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~ 678 (1107)
..|...|..+.|++++..++++ ..|+.+.+|++....... ... ....+..+.|.. . .
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~-~-~---------------- 382 (466)
T COG2319 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK---TLE-GHSNVLSVSFSP-D-G---------------- 382 (466)
T ss_pred cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeE---Eec-CCceEEEEEECC-C-C----------------
Confidence 3677789999994343556666 688999999998877221 111 122278888874 3 2
Q ss_pred CCCccEEE-EEcCCceEEEEeCCCcceecCC
Q 001287 679 NPAEEVII-VLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 679 ~~~~~~L~-s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
..+ .+..++.+.+|+...+..+...
T Consensus 383 -----~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 383 -----RVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred -----CEEEEecCCCceEEEecccCeeeeec
Confidence 233 3789999999999887765443
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=7.9e-13 Score=154.56 Aligned_cols=156 Identities=14% Similarity=0.145 Sum_probs=115.7
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCC--eEEEEEEeCCCe-EEEeccCceEEEEEecCCC
Q 001287 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP--VSTLSFCFINSS-LAVGNEFGLVYIYNLNGSL 569 (1107)
Q Consensus 493 ~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~--Vt~l~fspd~~~-Lasg~~dg~V~vw~~~~~~ 569 (1107)
..+++|++|..||+||+||.......... ...+.|+.. |..+.+-+.|-- |++|+.+|.|++||+....
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v--------~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLV--------CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccc--------eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 44679999999999999998765532110 125577766 999999997654 9999999999999998853
Q ss_pred CCccceeeccCcCcceecccCCcceeEEEEeecC--c-CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE---EEeec
Q 001287 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN--S-PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL---FFTDD 643 (1107)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~--~-~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~---~~~~~ 643 (1107)
.+. ......|- + .+|+|..++....+|+|+. +.|+||++.+..+- +....
T Consensus 1291 ~e~-----------------------~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1291 KET-----------------------FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF 1346 (1387)
T ss_pred ccc-----------------------cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc
Confidence 321 12222332 4 5999999999999999999 89999999875432 22222
Q ss_pred CCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCc
Q 001287 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1107)
Q Consensus 644 ~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g 702 (1107)
+..-..++.+|.|.++ ..+|++|..|..|.|+..+.+
T Consensus 1347 ~~q~~gs~scL~FHP~----------------------~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPH----------------------RLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCcCCCcceeeecch----------------------hHhhhhccCCceEEEeecCCc
Confidence 2234567789999954 667999999999999987653
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.55 E-value=7.7e-13 Score=136.78 Aligned_cols=301 Identities=13% Similarity=0.138 Sum_probs=195.7
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeec-CCCCCeEEEEEEeCC----CeEEEeccCceEEEEEecC
Q 001287 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVA-GSRAPVSTLSFCFIN----SSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 493 ~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~-~h~~~Vt~l~fspd~----~~Lasg~~dg~V~vw~~~~ 567 (1107)
...++++|.+.+ +|.++......-..++ +...+ .|......++|+-|. .+||.|+.-|.|+|.|+..
T Consensus 53 ~e~~vfatvG~~-rvtiy~c~~d~~ir~l-------q~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~ 124 (385)
T KOG1034|consen 53 DEPQVFATVGGN-RVTIYECPGDGGIRLL-------QSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS 124 (385)
T ss_pred CCCceEEEeCCc-EEEEEEECCccceeee-------eeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch
Confidence 344577776654 5777776543311111 01112 355667777887653 4799999999999999988
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEeecCCC
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~-~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~ 646 (1107)
. ++...+.+|...|..+.+.|+. +++.+|+.|-+|++|++++..++.-..-+.|
T Consensus 125 ~-------------------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 125 G-------------------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred h-------------------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 6 4667788999999999999965 8999999999999999999999877777789
Q ss_pred CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceec----CCCCcccccceeeEEE
Q 001287 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS----SSPWHLKKKVIAISME 722 (1107)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~----~~~~~~~~~~~~~~~~ 722 (1107)
|...|.++.|+ .++..+++++.|.++.+|+....++-. +.++.+++....
T Consensus 180 HrdeVLSvD~~----------------------~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p---- 233 (385)
T KOG1034|consen 180 HRDEVLSVDFS----------------------LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP---- 233 (385)
T ss_pred ccCcEEEEEEc----------------------CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc----
Confidence 99999999999 457789999999999999987544321 111111111000
Q ss_pred EecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCCCCCcEEEEEecCeeEEEecccc---
Q 001287 723 VIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSV--- 799 (1107)
Q Consensus 723 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~c~e~~l~v~sl~~~--- 799 (1107)
+. +|. ..-++.+ -.+-|.+-|.=+.|=. +..+--.||+++-.|---.+
T Consensus 234 ------------fp---t~~-----~~fp~fs------t~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~ 284 (385)
T KOG1034|consen 234 ------------FP---TPK-----THFPDFS------TTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEES 284 (385)
T ss_pred ------------CC---ccc-----ccccccc------ccccccchHHHHHHHh---hheeecccCceEEEEecchhhhh
Confidence 00 000 0000000 0011444343333321 33444446888888833111
Q ss_pred c------cccceeeeeecCCCcc-eeeeeeecCCceeEEEEEeecCcEEEeecCCccccccccccceeeceecCcccccc
Q 001287 800 I------QGNNKTVQKVKHKNRC-CWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTI 872 (1107)
Q Consensus 800 ~------~g~~~~i~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1107)
| .+..+.+...+. +.| .|-.-|..|+.+.+||++.+.|.|++|.|..-++...+.+. ++--...++.+
T Consensus 285 ~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~----~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 285 IHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT----HSKSGSTVRQT 359 (385)
T ss_pred hhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE----eccccceeeee
Confidence 0 111222333333 344 78888888999999999999999999999999987544332 12223348889
Q ss_pred ccc-CCc-EEEEcCce
Q 001287 873 SAD-NGQ-ITLANGSE 886 (1107)
Q Consensus 873 ~~s-~Gq-~~l~~~~e 886 (1107)
||| ||. ++||+.+.
T Consensus 360 sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDG 375 (385)
T ss_pred eecccCcEEEEEeCCC
Confidence 999 998 55566554
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=8.9e-13 Score=154.15 Aligned_cols=206 Identities=17% Similarity=0.200 Sum_probs=145.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCC----CCCCEEEEEEEe--CCCEEEEEeCCCcEEEE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP----SQLPYKNLEFLQ--NQGFLISITNDNEIQVW 103 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~----h~~~V~~l~fs~--d~~~L~S~s~d~~I~vW 103 (1107)
+..|-+.....+.|+|-...++++...-+|+|||......+.-.. -...|+.|++.. |...|++++.||.|+||
T Consensus 1059 ~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1059 FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 345667778889999999999999988999999997766653332 234799999976 45689999999999999
Q ss_pred Ec-C----CCeeeeeec-c-------CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccC
Q 001287 104 SL-E----SRSLACCLK-W-------ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1107)
Q Consensus 104 Dl-~----s~~~~~~~~-~-------~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1107)
+- . +.++++... . .+.=.-+.|.+...+|++++.-..|+|||.+.+ .+. ..+|...
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E--~~~---~diP~~s------ 1207 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE--QVV---ADIPYGS------ 1207 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc--eeE---eecccCC------
Confidence 73 2 234444331 1 112245677777888888888899999998853 222 1233221
Q ss_pred CCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE---E-EEeCCccccccccccCCCCCCCCccccCCCCCC
Q 001287 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI---I-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1107)
Q Consensus 171 ~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~---~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1107)
...|+++.-.-. .|+.++.|+.||.|++||.+.... + ..+.|++
T Consensus 1208 -----~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~-------------------------- 1255 (1387)
T KOG1517|consen 1208 -----STLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND-------------------------- 1255 (1387)
T ss_pred -----Cccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCC--------------------------
Confidence 145777776543 478899999999999999876432 2 2333411
Q ss_pred CCCCceeEEEeecCCCC-EEEEEEcCCcEEEEeCCC
Q 001287 247 PEEKEISALCWASSSGS-ILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 247 ~~~~~Vtsl~w~spdg~-~l~sg~~dG~I~lWd~~~ 281 (1107)
..+|..+.+- +.|- .|++|+.||.|.+||+..
T Consensus 1256 --~~~Iv~~slq-~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1256 --VEPIVHLSLQ-RQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred --cccceeEEee-cCCCcceeeeccCCeEEEEeccc
Confidence 3337777754 5554 499999999999999974
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.54 E-value=9.2e-14 Score=150.00 Aligned_cols=202 Identities=10% Similarity=0.185 Sum_probs=162.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce-eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~ 115 (1107)
...|++......++++|+..|.|+|||+....+ .++..|+..|+++.+.....||++++..|.|.|..+.++...+.+.
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 456777777779999999999999999975444 3788999999999999988999999999999999999999988887
Q ss_pred cC-C-CeEEEEEecCCCE-EEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCE
Q 001287 116 WE-S-NITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1107)
Q Consensus 116 ~~-~-~Vt~l~~~~~~~~-l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1107)
++ + .|.-+.+++..++ |.+++.+|.|.+||.......+. ....|. .+..+|+|+|. +..+
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~----~~~~Hs------------AP~~gicfsps-ne~l 223 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH----ASEAHS------------APCRGICFSPS-NEAL 223 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc----hhhhcc------------CCcCcceecCC-ccce
Confidence 76 4 4558899988765 55778899999999875321111 112232 77889999998 5667
Q ss_pred EEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC
Q 001287 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1107)
Q Consensus 193 ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG 272 (1107)
|++.+.|..|.+||..+.+......+ ..+.++++|. ++|.+|+.|...|
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y------------------------------~~Plstvaf~-~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTY------------------------------SHPLSTVAFS-ECGTYLCAGNSKG 272 (673)
T ss_pred EEEecccceEEEeecccccccceeee------------------------------cCCcceeeec-CCceEEEeecCCc
Confidence 99999999999999998765443322 5578889964 9999999999999
Q ss_pred cEEEEeCCCCCCCC
Q 001287 273 DILLWNTSTTASTK 286 (1107)
Q Consensus 273 ~I~lWd~~~~~~~~ 286 (1107)
.|..||+.....+.
T Consensus 273 ~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 273 ELIAYDMRSTKAPV 286 (673)
T ss_pred eEEEEecccCCCCc
Confidence 99999998775444
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.9e-14 Score=167.53 Aligned_cols=171 Identities=19% Similarity=0.314 Sum_probs=116.5
Q ss_pred EEEEcCCCC-EEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC--C----eeee
Q 001287 40 ILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES--R----SLAC 112 (1107)
Q Consensus 40 ~lafsp~~~-~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s--~----~~~~ 112 (1107)
.+||+|.+. +||+|+..|.+ | .+.+.+.++.+|.+.- . +.+.
T Consensus 11 ~~awSp~~~~~laagt~aq~~---D----------------------------~sfst~~slEifeld~~~~~~dlk~~~ 59 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQF---D----------------------------ASFSTSASLEIFELDFSDESSDLKPVG 59 (1049)
T ss_pred eEEecCCCchhhHHHhhhhcc---c----------------------------cccccccccceeeecccCccccccccc
Confidence 478888887 78888765432 1 1112344444444322 2 2344
Q ss_pred eeccCCCeEEEEEecCCCE----EEEEcCCCcEEEEEeecC--CCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 113 CLKWESNITAFSVISGSHF----MYIGDENGLMSVIKYDAD--EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 113 ~~~~~~~Vt~l~~~~~~~~----l~~g~~dg~V~vw~~d~~--~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
+++...+-..++|.+.+.. ++.|.+||+|-+|+-+.. .... +.+..-..|.+.|.++.|+|
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~-------------~~la~~~~h~G~V~gLDfN~ 126 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE-------------EVLATKSKHTGPVLGLDFNP 126 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcch-------------HHHhhhcccCCceeeeeccc
Confidence 5555667788889877765 899999999999997641 1111 11112234459999999999
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEE
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1107)
. .++.|++|..||.|.|||+..-+.-...+. + .-...|.++.|.-.....|+
T Consensus 127 ~-q~nlLASGa~~geI~iWDlnn~~tP~~~~~-------~--------------------~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 127 F-QGNLLASGADDGEILIWDLNKPETPFTPGS-------Q--------------------APPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred c-CCceeeccCCCCcEEEeccCCcCCCCCCCC-------C--------------------CCcccceEeccchhhhHHhh
Confidence 7 566899999999999999988544333221 0 11678999999866677889
Q ss_pred EEEcCCcEEEEeCCCC
Q 001287 267 VGYIDGDILLWNTSTT 282 (1107)
Q Consensus 267 sg~~dG~I~lWd~~~~ 282 (1107)
+++.+|.+.|||++..
T Consensus 179 S~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKK 194 (1049)
T ss_pred ccCCCCCceeccccCC
Confidence 9999999999999744
No 176
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.1e-12 Score=145.19 Aligned_cols=469 Identities=17% Similarity=0.172 Sum_probs=251.1
Q ss_pred CCCCeEEEEEcC------------CCCEEEEEECCCcEEEEeCCCcce-eeeCCCCCCEEEEEEEeC---C-CEEEEEeC
Q 001287 34 IPATASILAFDH------------IQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQN---Q-GFLISITN 96 (1107)
Q Consensus 34 ~~~~i~~lafsp------------~~~~LA~Gs~dg~I~iw~~~~~~~-~~~~~h~~~V~~l~fs~d---~-~~L~S~s~ 96 (1107)
|++.|+.+.|.| .+-+||++...|+|.|||.....+ ..+.+|..+|..++|-+. . ..|+....
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ 133 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG 133 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence 345566666654 345889999999999999965444 456677889999999874 2 57888899
Q ss_pred CCcEEEEEcCCCeeeeeeccCC-CeEEEEEecCC-CEEEEEcCCCcEEEEEeecC-----CCceeecceeeccc--cc--
Q 001287 97 DNEIQVWSLESRSLACCLKWES-NITAFSVISGS-HFMYIGDENGLMSVIKYDAD-----EGKLFQLPYNISAD--AL-- 165 (1107)
Q Consensus 97 d~~I~vWDl~s~~~~~~~~~~~-~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~-----~~~l~~~~~~i~~~--~~-- 165 (1107)
.++|.+||..+|+.+..+.... ...|+.++|-. +++.+-+..|.|.+.++-.. .++..| |... ++
T Consensus 134 ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q----I~sd~Sdl~~ 209 (1062)
T KOG1912|consen 134 SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ----ITSDHSDLAH 209 (1062)
T ss_pred CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE----EecCccchhh
Confidence 9999999999999998886554 45669999854 56666667777766665321 122222 3222 11
Q ss_pred ---ccccCCCCC-CCCC------eEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCC
Q 001287 166 ---SEKAGFPLL-SHQP------VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1107)
Q Consensus 166 ---~~~~~~~~~-~~~~------V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 235 (1107)
..+.+.... .+.. ...++|+|.. .+.+++.+..+. .|+|++-..++...-- .
T Consensus 210 lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prel-lv~dle~~~~l~vvpi---------e------- 271 (1062)
T KOG1912|consen 210 LERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPREL-LVFDLEYECCLAVVPI---------E------- 271 (1062)
T ss_pred hhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccce-EEEcchhhceeEEEEe---------c-------
Confidence 111111110 0111 2235678863 445778887776 6889887665433211 0
Q ss_pred CccccCCCCCCCCCCceeEEEeecCCC--CEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEE
Q 001287 236 STFLEGISEHQPEEKEISALCWASSSG--SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 313 (1107)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~spdg--~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 313 (1107)
++.+.-+.|. |++ ..|++++.||.+.+|..+....... .|...+
T Consensus 272 -------------r~~akfv~vl-P~~~rd~LfclH~nG~ltirvrk~~~~~f~--------------------~~~~~l 317 (1062)
T KOG1912|consen 272 -------------RGGAKFVDVL-PDPRRDALFCLHSNGRLTIRVRKEEPTEFK--------------------KPNASL 317 (1062)
T ss_pred -------------cCCcceeEec-cCCCcceEEEEecCCeEEEEEeeccCcccc--------------------ccchhh
Confidence 3333345554 555 5799999999999998754311100 000000
Q ss_pred EeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEE
Q 001287 314 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFV 393 (1107)
Q Consensus 314 ~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~v 393 (1107)
+.. .. .+ .+++..++ .....-+..+|. .+.++.+
T Consensus 318 --~~d----l~--~Q-----------~~~vr~m~--------------------~~rp~~~~~cPs-------~~sa~av 351 (1062)
T KOG1912|consen 318 --SMD----LG--EQ-----------VHVVRPME--------------------EFRPVIGASCPS-------TPSALAV 351 (1062)
T ss_pred --ccc----cc--cc-----------eEEEeech--------------------hcccceeecCCC-------Chhhhhh
Confidence 000 00 00 00111110 001111222232 2446666
Q ss_pred EccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCC
Q 001287 394 LTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGH 473 (1107)
Q Consensus 394 l~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1107)
+...|....|...+... .........+...|+......-.+....+.....++...... .+.. ....+++ ...
T Consensus 352 l~s~g~~~~w~l~~~ri---~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs--~~~~-~~p~p~~-t~~ 424 (1062)
T KOG1912|consen 352 LYSSGDSTFWQLSNGRI---HLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGS--TCVR-MRPMPEL-TKV 424 (1062)
T ss_pred hhhcchhHHHhhhcCCc---CcccccccccccccccccCceeehhhccccchhhcCCCCCCc--eeee-cccCccc-cee
Confidence 77777776665432110 000000011111111111111111111111111110000000 0000 0000000 000
Q ss_pred ccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEE
Q 001287 474 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1107)
Q Consensus 474 ~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Las 553 (1107)
++-| ||..- .-.-.++|.|...|+|-+.|+.++.+. .++.-|...|.++.|-...+++-.
T Consensus 425 ~~~p--~~n~~-------~~~~pLvAvGT~sGTV~vvdvst~~v~-----------~~fsvht~~VkgleW~g~sslvSf 484 (1062)
T KOG1912|consen 425 ENDP--GGNTP-------AGTVPLVAVGTNSGTVDVVDVSTNAVA-----------ASFSVHTSLVKGLEWLGNSSLVSF 484 (1062)
T ss_pred ecCC--CCCcc-------ceeeeeEEeecCCceEEEEEecchhhh-----------hhhcccccceeeeeeccceeEEEe
Confidence 1111 11100 001127889999999999999998866 567789999999999876665432
Q ss_pred ---------eccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEE-EeecCcCEEEEEEcCCCCEEEEEeC
Q 001287 554 ---------GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAV-FSLVNSPVRALQFTSSGAKLAVGFE 623 (1107)
Q Consensus 554 ---------g~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~h~~~Vt~la~sp~~~~la~Gs~ 623 (1107)
|+.-..+.|-++.++-.. .+.. -.....+|+.+..|..++|||+...
T Consensus 485 sys~~n~~sg~vrN~l~vtdLrtGlsk-----------------------~fR~l~~~despI~~irvS~~~~yLai~Fr 541 (1062)
T KOG1912|consen 485 SYSHVNSASGGVRNDLVVTDLRTGLSK-----------------------RFRGLQKPDESPIRAIRVSSSGRYLAILFR 541 (1062)
T ss_pred eeccccccccceeeeEEEEEccccccc-----------------------ccccCCCCCcCcceeeeecccCceEEEEec
Confidence 222233444444443110 0111 1234678999999999999999999
Q ss_pred CCeEEEEEcCCCeEEEEeecCCCCCCc-eEEEEEee
Q 001287 624 CGRVAVLDMNLLSVLFFTDDISGSSSP-IISMTWTE 658 (1107)
Q Consensus 624 dg~V~iwd~~~~~~~~~~~~~~~h~~~-V~~l~fs~ 658 (1107)
+.-+.|||+++.+++ .+..-.-| |+.++|+.
T Consensus 542 ~~plEiwd~kt~~~l----r~mS~a~P~it~leWsl 573 (1062)
T KOG1912|consen 542 REPLEIWDLKTLRML----RLMSLALPLITVLEWSL 573 (1062)
T ss_pred ccchHHHhhccchHH----HHHhhcCCcEEEEeecc
Confidence 999999999988776 22234445 88999983
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=5.3e-14 Score=167.22 Aligned_cols=207 Identities=21% Similarity=0.289 Sum_probs=157.1
Q ss_pred CCCCeEEEEEcCCCCE----EEEEECCCcEEEEeCCCc-------ceeeeCCCCCCEEEEEEEeCCC-EEEEEeCCCcEE
Q 001287 34 IPATASILAFDHIQRL----LAIATLDGRIKVIGGDGI-------EGLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQ 101 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~----LA~Gs~dg~I~iw~~~~~-------~~~~~~~h~~~V~~l~fs~d~~-~L~S~s~d~~I~ 101 (1107)
....=..|+|.+.+.. ||.|.+||.|-+|+.... .+.....|+++|..|.|++.++ .|+|+++||+|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 4445568999887765 999999999999997542 1225567999999999999877 999999999999
Q ss_pred EEEcCCCeeee---eeccCCCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCC
Q 001287 102 VWSLESRSLAC---CLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1107)
Q Consensus 102 vWDl~s~~~~~---~~~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1107)
|||+..-+.-. .....+.|.+++|+..-. .|+.|+.+|.+.|||+.... .++. +..+. ...
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~----ls~~~----------~~~ 207 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIK----LSDTP----------GRM 207 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccc----cccCC----------Ccc
Confidence 99998753322 223567899999997754 67788899999999998641 1221 22211 114
Q ss_pred CeEEEEcccCCCCCEEEEEECCC---eEEEEEccCCEE--EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCce
Q 001287 178 PVVGVLPHPNSSGNRVLIAYENA---LVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1107)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg---~V~vwdl~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 252 (1107)
.+..++|||. ..++|++++.|. .|.+||++.... ..+.+| .+.|
T Consensus 208 ~~S~l~WhP~-~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H------------------------------~~Gi 256 (1049)
T KOG0307|consen 208 HCSVLAWHPD-HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH------------------------------QRGI 256 (1049)
T ss_pred ceeeeeeCCC-CceeeeeecCCCCCceeEeecccccCCchhhhccc------------------------------ccce
Confidence 5889999998 556688888765 789999876532 223456 8889
Q ss_pred eEEEeecCCCCEEEEEEcCCcEEEEeCCCCCCCC
Q 001287 253 SALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1107)
Q Consensus 253 tsl~w~spdg~~l~sg~~dG~I~lWd~~~~~~~~ 286 (1107)
.++.|...|..+|++++.|+.|.+|+.++++...
T Consensus 257 lslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 257 LSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 9999986666999999999999999999876444
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.51 E-value=1.8e-12 Score=151.08 Aligned_cols=270 Identities=17% Similarity=0.154 Sum_probs=165.3
Q ss_pred CCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
..|+++.|+|. +..+++.|..+|.|.+||+..+.-....+- + ..+..+..+|+.++
T Consensus 243 s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-----s------------------~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 243 SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-----S------------------ALEVSHSEPVTAVV 298 (555)
T ss_pred CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCccc-----c------------------cccccCCcCeEEEE
Confidence 67999999998 667799999999999999988654211000 0 00112377899999
Q ss_pred eecCCCC--EEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeC
Q 001287 257 WASSSGS--ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGG 334 (1107)
Q Consensus 257 w~spdg~--~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg 334 (1107)
|. .+-. -+++++.||.|..|++.....+.. .+..... . . .+
T Consensus 299 W~-~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e----------~~~~~~~------------------~-~------~~- 341 (555)
T KOG1587|consen 299 WL-QNEHNTEFFSLSSDGSICSWDTDMLSLPVE----------GLLLESK------------------K-H------KG- 341 (555)
T ss_pred Ee-ccCCCCceEEEecCCcEeeeeccccccchh----------hcccccc------------------c-c------cc-
Confidence 97 4444 499999999999998764432211 0000000 0 0 00
Q ss_pred CCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCCCCCCCcceEEEEccCCeEEEEeccceeeeecc
Q 001287 335 DEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQ 414 (1107)
Q Consensus 335 ~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~ 414 (1107)
-..........+.|.+. ++..++|.++.|.++.-......
T Consensus 342 ----------------------------~~~~~~~~~t~~~F~~~-------~p~~FiVGTe~G~v~~~~r~g~~----- 381 (555)
T KOG1587|consen 342 ----------------------------QQSSKAVGATSLKFEPT-------DPNHFIVGTEEGKVYKGCRKGYT----- 381 (555)
T ss_pred ----------------------------cccccccceeeEeeccC-------CCceEEEEcCCcEEEEEeccCCc-----
Confidence 00001111223334443 56678889999998863311110
Q ss_pred cCCCCCCC-CccCCcccccCCCceeEEEEEeccCCCCCchhhhHHHhhccccCCCCccCCccccccCCCCCCCCccccCC
Q 001287 415 QEKKPSVC-PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHS 493 (1107)
Q Consensus 415 ~~~~~~~~-~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~gg~~~~~~~~~~s~ 493 (1107)
.... ..+.+. ....|.+.+.++.++|
T Consensus 382 ----~~~~~~~~~~~-------------------------------------------------~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 382 ----PAPEVSYKGHS-------------------------------------------------TFITHIGPVYAVSRNP 408 (555)
T ss_pred ----ccccccccccc-------------------------------------------------cccccCcceEeeecCC
Confidence 0000 000000 1112222333344555
Q ss_pred CCcEEEEEecCCcEEEEeCCC-CceeEEEeeccceeeeeecCCCCCeEEEEEEeCC-CeEEEeccCceEEEEEecCCCCC
Q 001287 494 VDRVYLAGYHDGSVRIWDATY-PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDA 571 (1107)
Q Consensus 494 ~~~~laTgs~DgtIriWd~~~-~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~-~~Lasg~~dg~V~vw~~~~~~~~ 571 (1107)
-...++..+.|.+||||.-.. ..+. ..+..+...|++++|||.- ..|++++.||.+.|||+.....+
T Consensus 409 F~~k~fls~gDW~vriWs~~~~~~Pl-----------~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 409 FYPKNFLSVGDWTVRIWSEDVIASPL-----------LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred CccceeeeeccceeEeccccCCCCcc-----------hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence 444554444499999998762 2221 2244555679999999965 56888888999999999876443
Q ss_pred ccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001287 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1107)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~ 634 (1107)
++.....+....+.+.|++.|++||+|+..|++.+|++..
T Consensus 478 -----------------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 -----------------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -----------------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3333344567778889999999999999999999999964
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.4e-13 Score=150.09 Aligned_cols=133 Identities=19% Similarity=0.253 Sum_probs=98.8
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC--------eeeee-eccCCCeEEEEEecCCCEEEEEcCCCcE
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--------SLACC-LKWESNITAFSVISGSHFMYIGDENGLM 141 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~--------~~~~~-~~~~~~Vt~l~~~~~~~~l~~g~~dg~V 141 (1107)
.+..|...|+.++|.+-...|++++.||+|++|+++.. +.+.+ ..|.++|.|+++...+.++++|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 44558889999999999999999999999999999332 22333 3799999999999999999999999999
Q ss_pred EEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE
Q 001287 142 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1107)
Q Consensus 142 ~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~ 212 (1107)
+.|++... +.||..... ..-.+.-.++.+.|..+++|+. ..+|++++.||+|++|+..+...
T Consensus 369 ~~w~~p~n-----~dp~ds~dp--~vl~~~l~Ghtdavw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 369 RCWNLPPN-----QDPDDSYDP--SVLSGTLLGHTDAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeccCCC-----CCcccccCc--chhccceeccccceeeeeeccc--ccceeeecCCceEEeeccCCcCc
Confidence 99976421 111111100 0000111233488999999874 55699999999999999877655
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=6.2e-11 Score=135.12 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=94.5
Q ss_pred EEEeCCCcEEEEEcCC-Ce--eeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 92 ISITNDNEIQVWSLES-RS--LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 92 ~S~s~d~~I~vWDl~s-~~--~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
++...++.|.+||+.+ ++ .+..+...+....++++|++++|++++ .++.|.+|+++ .++.+... ..++.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~-~~~~~----- 78 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFA-AESPL----- 78 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEe-eeecC-----
Confidence 3335689999999964 43 445555567788899999999998875 47889999987 34554321 11111
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccCCE-E---EEEeCCccccccccccCCCCCCCCccccCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQ-I---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~~~-~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1107)
...+..++|+| ++++++++. .++.|.+|++.+.. . +....+
T Consensus 79 --------~~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~------------------------ 124 (330)
T PRK11028 79 --------PGSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG------------------------ 124 (330)
T ss_pred --------CCCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC------------------------
Confidence 03467899988 677666654 58899999997432 1 111100
Q ss_pred CCCCCCCCceeEEEeecCCCCEEEEE-EcCCcEEEEeCCC
Q 001287 243 SEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTST 281 (1107)
Q Consensus 243 ~~~~~~~~~Vtsl~w~spdg~~l~sg-~~dG~I~lWd~~~ 281 (1107)
.....++++ +|+|++++++ ..++.|.+||+.+
T Consensus 125 ------~~~~~~~~~-~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 125 ------LEGCHSANI-DPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ------CCcccEeEe-CCCCCEEEEeeCCCCEEEEEEECC
Confidence 123455665 4999988655 4569999999864
No 181
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.49 E-value=2.8e-12 Score=132.25 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=122.1
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCC-ceeEEEeeccceeeeeecCCCCCeEEEEEEeCC-CeEEEeccCceEEEEEe
Q 001287 488 ITKCHSVDRVYLAGYHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNL 565 (1107)
Q Consensus 488 ~~~~s~~~~~laTgs~DgtIriWd~~~~-~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~-~~Lasg~~dg~V~vw~~ 565 (1107)
+++|+|||..|++|. ..+||++|+..+ ..-+.+..... .-.+..+-|.|++|+|-. ..+++|+....+-||..
T Consensus 163 sL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~----~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 163 SLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK----GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred eEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc----ccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 448999999999876 578999998533 32222211100 011334678999999955 59999999999999998
Q ss_pred cCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeC-CCeEEEEEcCCC-eEEEEeec
Q 001287 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE-CGRVAVLDMNLL-SVLFFTDD 643 (1107)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~-dg~V~iwd~~~~-~~~~~~~~ 643 (1107)
... .++..+-+|.+.||.|+|+++|+.|.+|.. |-.|..||++.- .+++ .
T Consensus 238 ~~~-------------------------~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~---~ 289 (406)
T KOG2919|consen 238 DGR-------------------------RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY---A 289 (406)
T ss_pred CCC-------------------------CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh---h
Confidence 775 356667799999999999999999999974 667999999754 3342 3
Q ss_pred CCCCCC-ceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC-cc
Q 001287 644 ISGSSS-PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS-EN 703 (1107)
Q Consensus 644 ~~~h~~-~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~-g~ 703 (1107)
+.+|.. .=..+.|.. +|.+++|++|+.||.|.|||... |+
T Consensus 290 L~rhv~~TNQRI~FDl--------------------d~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDL--------------------DPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhccCccceEEEec--------------------CCCCceeeccCCCccEEEEecCCCCC
Confidence 344655 556777873 37789999999999999999886 65
No 182
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=6.3e-13 Score=142.75 Aligned_cols=207 Identities=15% Similarity=0.206 Sum_probs=157.1
Q ss_pred ecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeC-CCEEEEEeCCCcEEEEEcCC
Q 001287 31 HYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWDl~s 107 (1107)
..||...|-+|++.-. ..+||+|+.|.+|++||++..+.. .+..|...|.+|+|.|. ..+|+++|.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 3467777778888754 569999999999999999766655 55568889999999984 57899999999999999985
Q ss_pred C-eeeeeeccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 108 R-SLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 108 ~-~~~~~~~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
- ..-...+..+.|-.++|.+.. ..++++..||+|+-++.... ++.+ |.+..|. ++|.++.++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-~~~v---wt~~AHd------------~~ISgl~~n 382 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-GKPV---WTLKAHD------------DEISGLSVN 382 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-CCce---eEEEecc------------CCcceEEec
Confidence 3 233344778999999999887 46778889998877776543 2333 6688887 899999999
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCC-CCE
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-GSI 264 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spd-g~~ 264 (1107)
+...+ .+.+++.+++|++|++.........+| ++. -++..|.... |+ .-+
T Consensus 383 ~~~p~-~l~t~s~d~~Vklw~~~~~~~~~v~~~-~~~--------------------------~~rl~c~~~~-~~~a~~ 433 (463)
T KOG0270|consen 383 IQTPG-LLSTASTDKVVKLWKFDVDSPKSVKEH-SFK--------------------------LGRLHCFALD-PDVAFT 433 (463)
T ss_pred CCCCc-ceeeccccceEEEEeecCCCCcccccc-ccc--------------------------ccceeecccC-CCcceE
Confidence 87444 599999999999999987665444444 111 2234444432 43 346
Q ss_pred EEEEEcCCcEEEEeCCCC
Q 001287 265 LAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 265 l~sg~~dG~I~lWd~~~~ 282 (1107)
++.|+..+.+++||+.+.
T Consensus 434 la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred EEecCccceEEEeecccC
Confidence 888899999999999765
No 183
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.47 E-value=2.2e-11 Score=125.98 Aligned_cols=222 Identities=12% Similarity=0.147 Sum_probs=165.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc----eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc-CCC
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL-ESR 108 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~----~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl-~s~ 108 (1107)
....|+|.||++|...+|++.....|.||...+.. ...+..|...|+.++|+|...++++++.|..-.||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 46789999999999999999999999999875544 4477889999999999999999999999999999998 444
Q ss_pred e---eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 109 S---LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 109 ~---~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
+ .+-.+.+....+++.|+|..+.+++|+....|.||-|+.+.. +.+..|. . .+....|+++.||
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd------WWVsKhi-----k--kPirStv~sldWh 155 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND------WWVSKHI-----K--KPIRSTVTSLDWH 155 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc------eehhhhh-----C--Cccccceeeeecc
Confidence 3 244557888999999999999999999999999999986432 2222221 0 1112669999999
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
| ++-+|+.|+.|+.++||..--..+...... +|=++...+|.....-....+.|..++|. |+|..|
T Consensus 156 p--nnVLlaaGs~D~k~rVfSayIK~Vdekpap-----------~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~l 221 (361)
T KOG1523|consen 156 P--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAP-----------TPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRL 221 (361)
T ss_pred C--CcceecccccCcceeEEEEeeeccccCCCC-----------CCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCEe
Confidence 9 677799999999999997321111100000 01111222232222222336789999984 999999
Q ss_pred EEEEcCCcEEEEeCCCC
Q 001287 266 AVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~~ 282 (1107)
+=.+.|+.+.+=|....
T Consensus 222 awv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eEecCCCceEEeecCCC
Confidence 99999999999887644
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=7.3e-12 Score=131.53 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=124.1
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC------eeeeee--ccCCCeEEEEEecCCCEEEEEcCCCcEE
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR------SLACCL--KWESNITAFSVISGSHFMYIGDENGLMS 142 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~------~~~~~~--~~~~~Vt~l~~~~~~~~l~~g~~dg~V~ 142 (1107)
-+.+|.+.|.+|+|+.++++|+|++.|..++||+++.. +.+..+ .|...|.|++|+....++++|..+|+|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 35579999999999999999999999999999998543 344444 4558999999999999999999999998
Q ss_pred EEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE-EEEEeCCccc
Q 001287 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDL 221 (1107)
Q Consensus 143 vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~-~~~~~g~~~~ 221 (1107)
..++++. .-+ | +..|.- +.+.|+.+.-||. +. .|++.+.+|.|.+||..... .+..+..
T Consensus 131 ~HDiEt~--qsi---~-V~~~~~---------~~~~VY~m~~~P~-DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--- 190 (609)
T KOG4227|consen 131 KHDIETK--QSI---Y-VANENN---------NRGDVYHMDQHPT-DN-TLIVVTRAKLVSFIDNRDRQNPISLVLP--- 190 (609)
T ss_pred eeecccc--eee---e-eecccC---------cccceeecccCCC-Cc-eEEEEecCceEEEEeccCCCCCCceeee---
Confidence 8877642 111 2 223321 1268999999997 44 49999999999999987754 1111100
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
+ .-.+...++.|+...-..|++....|-+-+||....
T Consensus 191 ----------A--------------N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 191 ----------A--------------NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ----------c--------------CCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 0 004456667776444567888889999999998644
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.46 E-value=2.4e-13 Score=155.12 Aligned_cols=160 Identities=13% Similarity=0.239 Sum_probs=125.7
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC
Q 001287 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1107)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~ 150 (1107)
+.+|-.+|.|..|...|.++++++.|..++||..++..++.+. +|.+.|+.++++..+-+++.++.|..|+||.+..
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-- 263 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-- 263 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC--
Confidence 4569999999999999999999999999999999999888776 8999999999999999999999999999999864
Q ss_pred CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCC
Q 001287 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1107)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~ 230 (1107)
+.++.. +.+|+ ++|++++|+|. .+.+.||++++||.+-...+.
T Consensus 264 ~~pvsv---Lrght------------gavtaiafsP~------~sss~dgt~~~wd~r~~~~~y---------------- 306 (1113)
T KOG0644|consen 264 GAPVSV---LRGHT------------GAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIY---------------- 306 (1113)
T ss_pred CchHHH---Hhccc------------cceeeeccCcc------ccCCCCCceEecccccccccc----------------
Confidence 444433 56676 99999999994 466889999999988211111
Q ss_pred CCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
++.++.+.+ ..-+.++.+ +.++..+++|+.|+.-..|...
T Consensus 307 ~prp~~~~~---------~~~~~s~~~-~~~~~~f~Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 307 VPRPLKFTE---------KDLVDSILF-ENNGDRFLTGSRDGEARNHEFE 346 (1113)
T ss_pred CCCCCCccc---------ccceeeeec-cccccccccccCCcccccchhh
Confidence 133444433 344555553 4778888888888877777653
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=9.5e-13 Score=141.17 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=149.4
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeecc-
Q 001287 39 SILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW- 116 (1107)
Q Consensus 39 ~~lafsp~~~~LA~Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~- 116 (1107)
-++||+.+++.||+|..||.+|||+.+.. ..+.+..|.+.|.+|.|+|||.+|++.+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 68999999999999999999999997554 455788899999999999999999999999 999999999966655532
Q ss_pred --CCCeEEEEEecCC---C-EE-EEEcCCCcEEEEEeecCCC-ceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 117 --ESNITAFSVISGS---H-FM-YIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 117 --~~~Vt~l~~~~~~---~-~l-~~g~~dg~V~vw~~d~~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
+.....+.|+.+. . ++ +.-...+.|+.|++....+ ...+..-.+. ....|.+++-++
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-------------~~~siSsl~VS~-- 291 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-------------RFKSISSLAVSD-- 291 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-------------ccCcceeEEEcC--
Confidence 2345566666555 2 22 2223446677766654322 1111100011 125799999965
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg 268 (1107)
+|++++.|+.||.|.|++..+-+...+..+ .| ..-||.+.| +||.+++++.
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq~~~~vk~--------aH--------------------~~~VT~ltF-~Pdsr~~~sv 342 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQRLQYVKE--------AH--------------------LGFVTGLTF-SPDSRYLASV 342 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceeeeeEeehh--------hh--------------------eeeeeeEEE-cCCcCccccc
Confidence 899999999999999999999887766533 22 668999996 5999999999
Q ss_pred EcCCcEEEEeCCC
Q 001287 269 YIDGDILLWNTST 281 (1107)
Q Consensus 269 ~~dG~I~lWd~~~ 281 (1107)
+.+....+-.+.-
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 9999998887764
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.44 E-value=1.7e-10 Score=131.48 Aligned_cols=190 Identities=11% Similarity=0.080 Sum_probs=123.4
Q ss_pred EEEEECCCcEEEEeCCC-c--ceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcC-CCee--eeeeccCCCeEE
Q 001287 50 LAIATLDGRIKVIGGDG-I--EGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLE-SRSL--ACCLKWESNITA 122 (1107)
Q Consensus 50 LA~Gs~dg~I~iw~~~~-~--~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~-s~~~--~~~~~~~~~Vt~ 122 (1107)
.++...|+.|++|+++. . +.+....+.+....++|+|++.+|+.++ .++.|.+|++. ++.+ +......+....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 34446789999999952 2 2333334556788899999999987765 47889999997 3433 233344456789
Q ss_pred EEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEE-EECCC
Q 001287 123 FSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI-AYENA 200 (1107)
Q Consensus 123 l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~-~~~dg 200 (1107)
++++|+++++++++. ++.|.+|+++.+ +.+......+++. ..+.+++++| +++++++ ...++
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~~-------------~~~~~~~~~p--~g~~l~v~~~~~~ 148 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKD-GIPVAPIQIIEGL-------------EGCHSANIDP--DNRTLWVPCLKED 148 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCC-CCCCCceeeccCC-------------CcccEeEeCC--CCCEEEEeeCCCC
Confidence 999999999998864 788999998743 2221110111111 3467788988 6776755 44568
Q ss_pred eEEEEEccCCEEEE-EeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc-CCcEEEEe
Q 001287 201 LVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWN 278 (1107)
Q Consensus 201 ~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~-dG~I~lWd 278 (1107)
.|.+||+.+...+. ...+ ... +. . ......+.|. |+|+++++... +++|.+|+
T Consensus 149 ~v~v~d~~~~g~l~~~~~~---~~~--~~---~----------------g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPA---EVT--TV---E----------------GAGPRHMVFH-PNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred EEEEEEECCCCcccccCCC---cee--cC---C----------------CCCCceEEEC-CCCCEEEEEecCCCEEEEEE
Confidence 99999997632211 1000 000 00 0 1123457765 99999988876 89999999
Q ss_pred CC
Q 001287 279 TS 280 (1107)
Q Consensus 279 ~~ 280 (1107)
+.
T Consensus 204 ~~ 205 (330)
T PRK11028 204 LK 205 (330)
T ss_pred Ee
Confidence 86
No 188
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=8.2e-11 Score=121.62 Aligned_cols=138 Identities=15% Similarity=0.239 Sum_probs=101.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEEEEcCCCeeeeeec-cC
Q 001287 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLK-WE 117 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~vWDl~s~~~~~~~~-~~ 117 (1107)
-+.|||+|+++|+.+.- ++.|-|..+.++.-+..--..|..+.|..|.-+++.+- .++.|.+|++..-+..+.+. .+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 47899999999999865 77777776665543333345688999999887776665 57899999999999888874 45
Q ss_pred CCeEEEEEecCCCEEEEE-cCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEE
Q 001287 118 SNITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1107)
Q Consensus 118 ~~Vt~l~~~~~~~~l~~g-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~ 196 (1107)
..+.+++|+|++++++.- .-+-.|.||.+.+..+.+++ .+. ..+..++|+| +|+..++.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~----~pK--------------~~~kg~~f~~--dg~f~ai~ 151 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP----HPK--------------TNVKGYAFHP--DGQFCAIL 151 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec----ccc--------------cCceeEEECC--CCceeeee
Confidence 789999999999776655 45778899999875544432 121 3367788877 67755555
Q ss_pred EC
Q 001287 197 YE 198 (1107)
Q Consensus 197 ~~ 198 (1107)
++
T Consensus 152 sR 153 (447)
T KOG4497|consen 152 SR 153 (447)
T ss_pred ec
Confidence 54
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.43 E-value=1.4e-11 Score=125.46 Aligned_cols=206 Identities=13% Similarity=0.213 Sum_probs=156.7
Q ss_pred eecCCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEeCCCc--cee--------eeCCCCCCEEEEEEEe-CCCEEEE
Q 001287 30 VHYGIPATASILAFDHIQR-----LLAIATLDGRIKVIGGDGI--EGL--------LISPSQLPYKNLEFLQ-NQGFLIS 93 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~-----~LA~Gs~dg~I~iw~~~~~--~~~--------~~~~h~~~V~~l~fs~-d~~~L~S 93 (1107)
..+-||..++.+-|.|++. +||+.+ -.+|||..... .+. ....+.+|+++..|.. +-.++.+
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt 168 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT 168 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence 3378999999999999884 777664 67999988532 211 2335778999999986 5667888
Q ss_pred EeCCCcEEEEEcCCCe----eeeeeccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccc
Q 001287 94 ITNDNEIQVWSLESRS----LACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1107)
Q Consensus 94 ~s~d~~I~vWDl~s~~----~~~~~~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1107)
.|-|-+..|||++++. ....+.|..+|..++|..++ +.+++.+.||+|+++|+.......+ .|.-+..
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI--IYE~p~~----- 241 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI--IYEDPSP----- 241 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE--EecCCCC-----
Confidence 8889999999999983 23455899999999999865 6788999999999999876433222 1333321
Q ss_pred cCCCCCCCCCeEEEEcccCCCCCEEEEEECCC-eEEEEEccCCE--EEEEeCCccccccccccCCCCCCCCccccCCCCC
Q 001287 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1107)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg-~V~vwdl~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
..+...++|++. +.+++++-..|+ .|.|.|++... +..+.+|
T Consensus 242 -------~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H--------------------------- 286 (364)
T KOG0290|consen 242 -------STPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNH--------------------------- 286 (364)
T ss_pred -------CCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcC---------------------------
Confidence 267889999887 566677655554 67888987653 3456666
Q ss_pred CCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 246 ~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|..++|......+|.+++.|....+||+...
T Consensus 287 ---~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 287 ---QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ---cccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 7889999999667789999999999999999754
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.42 E-value=7.7e-11 Score=128.88 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=71.6
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~ 569 (1107)
..++..++|++|++|-..+|||..+..+- .-..|..+||+++|.|| ..++.++.. +.| ++
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~G~~Lf------------~S~~~ey~ITSva~npd-~~~~v~S~n-t~R---~~--- 252 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQGANLF------------TSAAEEYAITSVAFNPE-KDYLLWSYN-TAR---FS--- 252 (737)
T ss_pred ecCccccceeecCCceeEEeecccCcccc------------cCChhccceeeeeeccc-cceeeeeee-eee---ec---
Confidence 55667779999999999999998876543 24568889999999999 666666532 222 11
Q ss_pred CCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001287 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~ 632 (1107)
....+.|..++||+||..+++|+..|.|.+=.+
T Consensus 253 ------------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 253 ------------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ------------------------------CCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 234578999999999999999999998876444
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2e-12 Score=142.83 Aligned_cols=217 Identities=18% Similarity=0.212 Sum_probs=161.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---------cceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~---------~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
-+...|.+++|.|....|++|+.||.|++|++.. .....+.+|.+||-|+++..++.++++++.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 4566789999999999999999999999999821 1344677899999999999999999999999999999
Q ss_pred EcCCC----------eee-eeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecc--------eeecccc
Q 001287 104 SLESR----------SLA-CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP--------YNISADA 164 (1107)
Q Consensus 104 Dl~s~----------~~~-~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~--------~~i~~~~ 164 (1107)
++... .+. +..+|.+.|..+++++..++|+.++.||+|+.|............+ +.+....
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR 451 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch
Confidence 76432 122 2337889999999999999999999999999999764322100000 0000000
Q ss_pred ----c---------------cc--ccCCC--CC---CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-eC
Q 001287 165 ----L---------------SE--KAGFP--LL---SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GG 217 (1107)
Q Consensus 165 ----~---------------~~--~~~~~--~~---~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g 217 (1107)
+ .. .+... .+ ....+.-|.++|. ..+.+++-.|+.|+++|..++.++.- ..
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~--~~~~~~~hed~~Ir~~dn~~~~~l~s~~a 529 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT--ADITFTAHEDRSIRFFDNKTGKILHSMVA 529 (577)
T ss_pred hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC--CCeeEecccCCceecccccccccchheee
Confidence 0 00 00000 01 1245777888884 56789999999999999999887642 22
Q ss_pred CccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 218 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
| ...|++++.. |+|-+|++|+.||.+++|++...
T Consensus 530 ~------------------------------~~svtslai~-~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 530 H------------------------------KDSVTSLAID-PNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred c------------------------------cceecceeec-CCCceEEeecCCceeehhhccch
Confidence 2 6679999976 99999999999999999998643
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.42 E-value=8.2e-11 Score=119.92 Aligned_cols=177 Identities=11% Similarity=0.155 Sum_probs=109.8
Q ss_pred eeecCCCCCeEEEEEcC---CCCEEEEEECC----CcEEEEeC--CCcceeee--CCCCCCEEEEEEEeCCCEEEEEeCC
Q 001287 29 AVHYGIPATASILAFDH---IQRLLAIATLD----GRIKVIGG--DGIEGLLI--SPSQLPYKNLEFLQNQGFLISITND 97 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp---~~~~LA~Gs~d----g~I~iw~~--~~~~~~~~--~~h~~~V~~l~fs~d~~~L~S~s~d 97 (1107)
...|.-|-.+-+++|+. ..-+||+|+-- ++|.|-.+ +..+.+.. ..|.-|++.+.|.|+..-+
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~------ 111 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGV------ 111 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcccc------
Confidence 56677888888999983 34589999843 66777655 33344433 3677788888888774100
Q ss_pred CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCC
Q 001287 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1107)
Q Consensus 98 ~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1107)
.| ++||+. +..+++|....++..+... -.+..+. . .....
T Consensus 112 ----------------------------~p--dlLATs--~D~LRlWri~~ee~~~~~~-~~L~~~k-n------s~~~a 151 (364)
T KOG0290|consen 112 ----------------------------YP--DLLATS--SDFLRLWRIGDEESRVELQ-SVLNNNK-N------SEFCA 151 (364)
T ss_pred ----------------------------Cc--chhhcc--cCeEEEEeccCcCCceehh-hhhccCc-c------cccCC
Confidence 00 112221 1224555544332222210 1111111 0 11126
Q ss_pred CeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE----EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCcee
Q 001287 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1107)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 253 (1107)
++++.-|+-. +.+++.+.+-|-+..|||++++.. .++..| .++|.
T Consensus 152 PlTSFDWne~-dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH------------------------------DKEV~ 200 (364)
T KOG0290|consen 152 PLTSFDWNEV-DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH------------------------------DKEVY 200 (364)
T ss_pred cccccccccC-CcceeEeecccCeEEEEEEeeccccceeeEEEec------------------------------Cccee
Confidence 7888888765 667788999999999999999732 234444 89999
Q ss_pred EEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 254 ALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 254 sl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
.++|....-+.+++.+.||+++++|+...
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEeccc
Confidence 99987323367899999999999999754
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.42 E-value=4.7e-11 Score=121.49 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=113.0
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCe-EEEeccCceEEEEEecCCCCC
Q 001287 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS-LAVGNEFGLVYIYNLNGSLDA 571 (1107)
Q Consensus 493 ~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~-Lasg~~dg~V~vw~~~~~~~~ 571 (1107)
++++.++|. .|++++.||+.+.... +. + -..|...|..|.|.|+-++ |+++++||.|+|||.+....
T Consensus 182 Hdgnqv~tt-~d~tl~~~D~RT~~~~--~s-------I-~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~- 249 (370)
T KOG1007|consen 182 HDGNQVATT-SDSTLQFWDLRTMKKN--NS-------I-EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF- 249 (370)
T ss_pred CccceEEEe-CCCcEEEEEccchhhh--cc-------h-hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-
Confidence 455566665 4899999999866533 11 1 3467778999999998765 88999999999999987532
Q ss_pred ccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCe----E---------
Q 001287 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLS----V--------- 637 (1107)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~-~~la~Gs~dg~V~iwd~~~~~----~--------- 637 (1107)
++..+..|..-|+++.|+|.. ++|.+|+.|..|.+|...+-. +
T Consensus 250 -----------------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~ 306 (370)
T KOG1007|consen 250 -----------------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES 306 (370)
T ss_pred -----------------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccC
Confidence 567778999999999999964 788999999999999763211 0
Q ss_pred -----------E--EEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEe
Q 001287 638 -----------L--FFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1107)
Q Consensus 638 -----------~--~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d 698 (1107)
+ -+..++..|...|.+++|++. +.-++++.+.||.|.|=.
T Consensus 307 e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa---------------------dPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 307 EDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA---------------------DPWIFASLSYDGRVIISS 359 (370)
T ss_pred cchhhHHhcccccccccccccccccceEEEeeccC---------------------CCeeEEEeccCceEEeec
Confidence 0 011356679999999999954 234578899999986644
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.40 E-value=1e-12 Score=150.15 Aligned_cols=156 Identities=16% Similarity=0.218 Sum_probs=126.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~ 110 (1107)
.||-..|.|.+||-.|+++.+|+.|..++||..++..++ ...+|++.|+.++.+.+..+++++|.|..|+||.+..+.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 477788999999999999999999999999998766655 6778999999999999989999999999999999999999
Q ss_pred eeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 111 ~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
+..+ +|++.||+++|+|.. ..+.||++++|+++-+.......|-++.+. .-+.++.| ...
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~-------------~~~~s~~~--~~~ 327 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK-------------DLVDSILF--ENN 327 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccc-------------cceeeeec--ccc
Confidence 9887 799999999999976 677899999999873222222112222221 45778888 446
Q ss_pred CCEEEEEECCCeEEEEE
Q 001287 190 GNRVLIAYENALVILWD 206 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwd 206 (1107)
+..+++++.|+.-..|.
T Consensus 328 ~~~f~Tgs~d~ea~n~e 344 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHE 344 (1113)
T ss_pred ccccccccCCcccccch
Confidence 77788888888766654
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.40 E-value=3.8e-11 Score=140.14 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=126.3
Q ss_pred CcEEEEeCCCc-ceeeeCCCCCCEEEEEEEe-CCCEEEEEeCCCcEEEEEcCCCee--e-----eeeccCCCeEEEEEec
Q 001287 57 GRIKVIGGDGI-EGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSL--A-----CCLKWESNITAFSVIS 127 (1107)
Q Consensus 57 g~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~~I~vWDl~s~~~--~-----~~~~~~~~Vt~l~~~~ 127 (1107)
+.+.||++... .--....-..+|+++.|+| +..+|+.|+.+|.|.+||+..+.. . ....|...++++.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999544 3334555678999999999 455677777899999999988865 2 2226778999999986
Q ss_pred CCC--EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEE
Q 001287 128 GSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1107)
Q Consensus 128 ~~~--~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vw 205 (1107)
+-. -+++++.||.|..|+.+........ ..... ....+........++++.|.|. +..++++|+..|.|..-
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~----~~~~~-~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEG----LLLES-KKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKG 375 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhh----ccccc-ccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEE
Confidence 543 4889999999999987642110000 00000 0111122233467999999998 56669999999987663
Q ss_pred EccCCEE---EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 206 DVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 206 dl~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
+-...+. ..+.+|.... .+.+.|.++.+. |-+..++..+.|.++++|...
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~------------------------~h~g~v~~v~~n-PF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFI------------------------THIGPVYAVSRN-PFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred eccCCccccccccccccccc------------------------ccCcceEeeecC-CCccceeeeeccceeEecccc
Confidence 3333222 1112221111 127789999975 877766555559999999875
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.40 E-value=1.2e-11 Score=125.85 Aligned_cols=222 Identities=14% Similarity=0.150 Sum_probs=153.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce-e------eeCCCCCCEEEEEEEe--CCCEEEEEeCCCcEEEEEcCC
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-L------LISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~-~------~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWDl~s 107 (1107)
.|.|+.|.|++.-||.-. |..|.+|+++.... . ...+|....++-+|+| |+..++ +..|+++..||+++
T Consensus 125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRT 202 (370)
T ss_pred ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccc
Confidence 899999999999988776 88999999965433 1 2223566788889998 444454 45699999999999
Q ss_pred Ceeeeee--ccCCCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 108 RSLACCL--KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 108 ~~~~~~~--~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
.....++ .|...|..+.|+|..+ +|++++.||.|+|||...... .+ +.+++|. .+|-+|.|
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-pv---~el~~Hs------------HWvW~VRf 266 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-PV---QELPGHS------------HWVWAVRF 266 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-cc---cccCCCc------------eEEEEEEe
Confidence 8777666 5778899999999986 577888999999999764221 11 3466666 89999999
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEE--EEEeCCccccccccccCCCCCCCCcc-ccCCCCCCCCCCceeEEEeecCC
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTF-LEGISEHQPEEKEISALCWASSS 261 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Vtsl~w~spd 261 (1107)
+|..+ .+++++++|..|.+|...+-.. ...+++...... -.+. ....+.. .+.+..-.+++..|.+++|.+.|
T Consensus 267 n~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e--~~ds-eer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 267 NPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE--DEDS-EERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred cCccc-eEEEecCCCceeEEEeccccccccccccccccccCc--chhh-HHhcccccccccccccccccceEEEeeccCC
Confidence 99854 4699999999999998654321 111111100000 0000 0000000 00111122347899999999999
Q ss_pred CCEEEEEEcCCcEEEEeCC
Q 001287 262 GSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 262 g~~l~sg~~dG~I~lWd~~ 280 (1107)
--.+++-+.||.+.|=++.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 9999999999999886654
No 197
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.40 E-value=9.9e-12 Score=131.44 Aligned_cols=212 Identities=13% Similarity=0.138 Sum_probs=153.2
Q ss_pred ccceeeeecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCc--------ceeeeCCCCCCEEEEEEEeC-CCEEEE
Q 001287 24 LNLRIAVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQN-QGFLIS 93 (1107)
Q Consensus 24 ~~~~~~~~~G~~~~i~~lafsp~-~~~LA~Gs~dg~I~iw~~~~~--------~~~~~~~h~~~V~~l~fs~d-~~~L~S 93 (1107)
+|.+.-.-.||.+.+-.++|+|- ...||+|++|.+|.||.++.. -+..+.+|...|-.++|+|- ...|+|
T Consensus 70 ~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 70 MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhh
Confidence 44444555799999999999994 579999999999999998532 24577889999999999994 467999
Q ss_pred EeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCC
Q 001287 94 ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1107)
Q Consensus 94 ~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1107)
++.|++|.+||+.+++.+-.+.|+..|.+++|+.++.+|++.+.|..|+||+-. +++++.- -.+|.-
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr--~~~~v~e---~~~heG-------- 216 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR--RGTVVSE---GVAHEG-------- 216 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCC--CCcEeee---cccccC--------
Confidence 999999999999999988888899999999999999999999999999999855 4666642 234430
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEEC---CCeEEEEEccCCEE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCC
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~---dg~V~vwdl~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1107)
.....+.| ..+++.+-+|++ +..+.+||...-.. +..... . ..
T Consensus 217 ---~k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el---D-------------------------tS 263 (472)
T KOG0303|consen 217 ---AKPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL---D-------------------------TS 263 (472)
T ss_pred ---CCcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEe---c-------------------------cC
Confidence 12333445 336764445543 56889998655321 111100 0 01
Q ss_pred CceeEEEeecCCCCEEEEE-EcCCcEEEEeCCCC
Q 001287 250 KEISALCWASSSGSILAVG-YIDGDILLWNTSTT 282 (1107)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg-~~dG~I~lWd~~~~ 282 (1107)
..|.==.|. +|.+.|+.+ -.||.|+-|.+.+.
T Consensus 264 nGvl~PFyD-~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 264 NGVLLPFYD-PDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CceEEeeec-CCCCEEEEEecCCcceEEEEecCC
Confidence 222222343 777776554 46999999998765
No 198
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.39 E-value=2.8e-11 Score=128.10 Aligned_cols=216 Identities=13% Similarity=0.139 Sum_probs=158.2
Q ss_pred ecCCCCCeEEEEEEe-CCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEE
Q 001287 532 VAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ 610 (1107)
Q Consensus 532 l~~h~~~Vt~l~fsp-d~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la 610 (1107)
+.+|.++|..++|+| ++..+|+|+.|.+|.||.+..+.-.. +-..++..+.+|...|--++
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~------------------~ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR------------------DLTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc------------------CcccceEEEeecceeEEEEe
Confidence 679999999999999 56789999999999999997652211 11136788999999999999
Q ss_pred EcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEc
Q 001287 611 FTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 689 (1107)
Q Consensus 611 ~sp~~-~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s 689 (1107)
|+|.. +.|++++.|.+|.|||+.++..+... . |+.-|.++.|+ .++.+|++.+
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l---~-hpd~i~S~sfn----------------------~dGs~l~Ttc 192 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITL---D-HPDMVYSMSFN----------------------RDGSLLCTTC 192 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeec---C-CCCeEEEEEec----------------------cCCceeeeec
Confidence 99965 67889999999999999999887542 3 99999999999 5588999999
Q ss_pred CCceEEEEeCCCcceecCCCCccc-ccceeeEEEEecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccc
Q 001287 690 KDAKISIVGGSSENMISSSPWHLK-KKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFS 768 (1107)
Q Consensus 690 ~Dg~v~v~d~~~g~~i~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 768 (1107)
+|..|+|||..+|+++.....+.. ++.+++.+.-.
T Consensus 193 kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g-------------------------------------------- 228 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG-------------------------------------------- 228 (472)
T ss_pred ccceeEEEcCCCCcEeeecccccCCCcceeEEeccC--------------------------------------------
Confidence 999999999999999877622111 12222222211
Q ss_pred cccccCCCCCCCcEEEEE-----ecCeeEEEeccccccccceeeeeecCCCcceeeeeeecCCceeEEEEEeecCcEEEe
Q 001287 769 SENACSGESSNDALVLLC-----CEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIR 843 (1107)
Q Consensus 769 ~~~~~~~~~~~~~~~l~c-----~e~~l~v~sl~~~~~g~~~~i~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~i~i~ 843 (1107)
.+++- +|.++-+|.-.++ +.++-.+.+..+-.-=.+|.......--+|+=.||.||-|
T Consensus 229 -------------~i~tTGfsr~seRq~aLwdp~nl----~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 229 -------------KIFTTGFSRMSERQIALWDPNNL----EEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred -------------ceeeeccccccccceeccCcccc----cCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 11111 3457777877774 5667777776443333345543344555677788999999
Q ss_pred ecCCccccc
Q 001287 844 SLPDLELVM 852 (1107)
Q Consensus 844 slp~l~~~~ 852 (1107)
.+-+=.+.+
T Consensus 292 Eit~d~P~~ 300 (472)
T KOG0303|consen 292 EITNEPPFV 300 (472)
T ss_pred EecCCCcee
Confidence 887766555
No 199
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.38 E-value=5.4e-11 Score=126.74 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=130.6
Q ss_pred CCccccCCCCc-EEEEEecCCcEEEEeCCCCceeEEEeeccce-eeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEE
Q 001287 486 VPITKCHSVDR-VYLAGYHDGSVRIWDATYPVFKLICALDAEV-QGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIY 563 (1107)
Q Consensus 486 ~~~~~~s~~~~-~laTgs~DgtIriWd~~~~~l~~~~~l~~~~-~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw 563 (1107)
+..+.++++.. .++||+.|..||||-+.......-- ..+ ..-.|..|..+|+++.|+|+|..||+|+++|.|.+|
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 33446666665 9999999999999987644322100 000 012478999999999999999999999999999999
Q ss_pred EecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec
Q 001287 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1107)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~ 643 (1107)
....... +-.++ + .-...+.+.....+.+|...|..++|+|++.++++|+.|..+++||+..+.++ ..
T Consensus 93 k~~~~~~-----~~~d~--e--~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~---~~ 160 (434)
T KOG1009|consen 93 KQGDVRI-----FDADT--E--ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL---AI 160 (434)
T ss_pred EecCcCC-----ccccc--h--hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE---ee
Confidence 8774211 00000 0 00001223445667789999999999999999999999999999999999988 46
Q ss_pred CCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 644 ~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
+.+|..-|..++|.++ ..++++-+.|....+++...
T Consensus 161 ~~dh~~yvqgvawDpl----------------------~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPL----------------------NQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred ccccccccceeecchh----------------------hhhhhhhccCcccceeeeee
Confidence 6779999999999955 55577777776666665544
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=5.5e-11 Score=130.53 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=81.7
Q ss_pred CeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCE
Q 001287 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1107)
Q Consensus 538 ~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~ 617 (1107)
+|...+|+|||++||+.+.||.+|||++.+.. ++...+..-+...|++|||||++
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-------------------------Llg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-------------------------LLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHH-------------------------HHHHHHhhccceEEEEEcCCccE
Confidence 67889999999999999999999999998851 22333445678999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeec
Q 001287 618 LAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEF 659 (1107)
Q Consensus 618 la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~ 659 (1107)
||+|++|-.|.||.+...+++.+. .||.+.|..++|.++
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARG---qGHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARG---QGHKSWVSVVAFDPY 385 (636)
T ss_pred EEecCCcceEEEEEeccceEEEec---cccccceeeEeeccc
Confidence 999999999999999999999544 469999999999964
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=4.7e-11 Score=124.58 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=119.2
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCC-CCeEEEEEEeCCCeEEEecc----CceEEEEEecCC
Q 001287 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR-APVSTLSFCFINSSLAVGNE----FGLVYIYNLNGS 568 (1107)
Q Consensus 494 ~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~-~~Vt~l~fspd~~~Lasg~~----dg~V~vw~~~~~ 568 (1107)
....+.+|+.||+||+||+....-. ..+....+. .+..|++..-..+.++.|.. +-.|.+||++..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~---------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~ 153 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAES---------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE 153 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhh---------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence 3458999999999999999866522 223455555 57788888778888888764 678999999886
Q ss_pred CCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCe---EEEEeecC
Q 001287 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLS---VLFFTDDI 644 (1107)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~-~~~la~Gs~dg~V~iwd~~~~~---~~~~~~~~ 644 (1107)
... .......|...||+|+|+|. -.+|++|+.||.|.|||++... .++ ..
T Consensus 154 qq~-----------------------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~---~v 207 (376)
T KOG1188|consen 154 QQL-----------------------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL---HV 207 (376)
T ss_pred cch-----------------------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH---Hh
Confidence 321 12234579999999999995 4899999999999999997652 121 11
Q ss_pred CCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecC
Q 001287 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 707 (1107)
Q Consensus 645 ~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~ 707 (1107)
..|.+.|..+.|....+. .+++.+...+..+|+.+.|.....
T Consensus 208 iN~~sSI~~igw~~~~yk---------------------rI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 208 INHGSSIHLIGWLSKKYK---------------------RIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred hcccceeeeeeeecCCcc---------------------eEEEEEccCceeEEEccCCChhhc
Confidence 347888999999965432 499999999999999998885433
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=4.3e-11 Score=118.88 Aligned_cols=202 Identities=18% Similarity=0.194 Sum_probs=145.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------c-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDG----------I-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~----------~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl 105 (1107)
+|-+-|++|.+++|++|..+|.|-++.+.. . ..+.+..|.+||..++|.. .+|++++ ||.|+=|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 455668999999999999999999997632 1 2335578999999999994 4677777 599999998
Q ss_pred CCCee-e-----eeec---cC-----CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCC
Q 001287 106 ESRSL-A-----CCLK---WE-----SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1107)
Q Consensus 106 ~s~~~-~-----~~~~---~~-----~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1107)
..... . .... +. -.|+++...|..+-++.+..|+.++.|+++. |++... +.+|.
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~--G~i~r~---~rGHt------- 156 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED--GRIQRE---YRGHT------- 156 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC--CEEEEE---EcCCc-------
Confidence 65422 1 1111 11 3699999999998888888999888888775 777644 77887
Q ss_pred CCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 172 ~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
+.|.++.-... .+ ++++|+.||++||||.++++.+...+..+- +.-.+..- .+.
T Consensus 157 -----DYvH~vv~R~~-~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~----------~~~lRp~~---------g~w 210 (325)
T KOG0649|consen 157 -----DYVHSVVGRNA-NG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKN----------PNLLRPDW---------GKW 210 (325)
T ss_pred -----ceeeeeeeccc-Cc-ceeecCCCccEEEEeccccceeEEeccccC----------hhhcCccc---------Cce
Confidence 88999988432 44 499999999999999999987766543110 00111100 345
Q ss_pred eeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 252 ISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
|-+++ -+..+|++|+. -.+.+|++...+
T Consensus 211 igala---~~edWlvCGgG-p~lslwhLrsse 238 (325)
T KOG0649|consen 211 IGALA---VNEDWLVCGGG-PKLSLWHLRSSE 238 (325)
T ss_pred eEEEe---ccCceEEecCC-CceeEEeccCCC
Confidence 66666 45678888753 569999998653
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=6.2e-12 Score=134.99 Aligned_cols=175 Identities=18% Similarity=0.227 Sum_probs=124.4
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecC
Q 001287 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 488 ~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~ 567 (1107)
++++.+++..++||+.||++|||+...-... .....|...|.+|+|+|||.+|++.+.| ..+||+...
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-----------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-----------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhh-----------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 4589999999999999999999997655533 2355788899999999999999999999 999999887
Q ss_pred CC-------CC-----ccceeeccCcCcceec---cc-CCcce-eE------------EEEeecCcCEEEEEEcCCCCEE
Q 001287 568 SL-------DA-----KNFLFVLETKSEVHAL---PE-GKISL-CR------------AVFSLVNSPVRALQFTSSGAKL 618 (1107)
Q Consensus 568 ~~-------~~-----~~~~~~~~~~~~~~~~---~~-~~g~~-~~------------~~~~~h~~~Vt~la~sp~~~~l 618 (1107)
.. .+ ..+.|.....++..-+ +. +++.. |. .....-...|++++.|++|+++
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 61 11 1222332221221100 00 11110 10 1111123479999999999999
Q ss_pred EEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEe
Q 001287 619 AVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1107)
Q Consensus 619 a~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d 698 (1107)
|.|+.||.|.|++....+.++..+ ..|...|+.|.|+ |+.+++.+.+.|....|.-
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~----------------------Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFS----------------------PDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeeh--hhheeeeeeEEEc----------------------CCcCcccccccCCceeEEE
Confidence 999999999999999988775443 3599999999999 5566677777776655544
No 204
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.36 E-value=2.7e-10 Score=117.85 Aligned_cols=139 Identities=11% Similarity=0.111 Sum_probs=100.9
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEE-cCCCcEEEEEeecCCCceeeccee
Q 001287 81 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYN 159 (1107)
Q Consensus 81 ~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g-~~dg~V~vw~~d~~~~~l~~~~~~ 159 (1107)
..+|||+|+++++++. ..+.|-|.++-++.+.+.--..|..+.|..+..+++++ ..++.|.+|++...+-.. +
T Consensus 13 ~c~fSp~g~yiAs~~~-yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c-----k 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC-----K 86 (447)
T ss_pred ceeECCCCCeeeeeee-eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE-----E
Confidence 5689999999999984 48999999998877666555667788888888777655 578899999987432211 2
Q ss_pred ecccccccccCCCCCCCCCeEEEEcccCCCC-CEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCcc
Q 001287 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSG-NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1107)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~-~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 238 (1107)
|.... .++.++.|+| +| ..|.+..-+-.|.||.+.+.+...+.-.
T Consensus 87 Ideg~------------agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~~~p-------------------- 132 (447)
T KOG4497|consen 87 IDEGQ------------AGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLLPHP-------------------- 132 (447)
T ss_pred eccCC------------CcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEeccc--------------------
Confidence 33322 7799999999 56 3455666688899999999887654311
Q ss_pred ccCCCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001287 239 LEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1107)
Q Consensus 239 ~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1107)
...+..++|+ |||++.+..+.
T Consensus 133 ----------K~~~kg~~f~-~dg~f~ai~sR 153 (447)
T KOG4497|consen 133 ----------KTNVKGYAFH-PDGQFCAILSR 153 (447)
T ss_pred ----------ccCceeEEEC-CCCceeeeeec
Confidence 3345667765 99998776654
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.35 E-value=2.2e-09 Score=113.58 Aligned_cols=196 Identities=15% Similarity=0.260 Sum_probs=135.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeC-CCCCCEEEEEEEeCCCEEEEEeC--CCcEEEEEcCCCee
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITN--DNEIQVWSLESRSL 110 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~-~h~~~V~~l~fs~d~~~L~S~s~--d~~I~vWDl~s~~~ 110 (1107)
-+.++..+.|.-+...|++|+.|| -++|.....+...-. .....|.-+-|+.. +|+-++. -+.+++.+...+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCce
Confidence 355677888999999999999999 578887544432211 12224566666665 4444443 45599999999999
Q ss_pred eeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 111 ~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
++.+.++..|.++.++ .++|++.-++. |+|+|+.. -++..+ |.. ..++...+.++++++ .+
T Consensus 81 ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~--MklLhT---I~t---------~~~n~~gl~AlS~n~--~n 141 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKD--MKLLHT---IET---------TPPNPKGLCALSPNN--AN 141 (391)
T ss_pred EEEEecCCceEEEEEc--cceEEEEEccc-EEEEeccc--ceeehh---hhc---------cCCCccceEeeccCC--CC
Confidence 9999999999999885 56677776665 88888764 233332 221 112225577776655 45
Q ss_pred CEEEE--EECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 191 NRVLI--AYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 191 ~~ll~--~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
.+++- ....|.|+|||..+-+.+.. ..| ++.+.+++|. ++|.+||+
T Consensus 142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH------------------------------~~~lAalafs-~~G~llAT 190 (391)
T KOG2110|consen 142 CYLAYPGSTTSGDVVLFDTINLQPVNTINAH------------------------------KGPLAALAFS-PDGTLLAT 190 (391)
T ss_pred ceEEecCCCCCceEEEEEcccceeeeEEEec------------------------------CCceeEEEEC-CCCCEEEE
Confidence 54553 23468999999988776543 334 8899999974 99999999
Q ss_pred EEcCCc-EEEEeCCCC
Q 001287 268 GYIDGD-ILLWNTSTT 282 (1107)
Q Consensus 268 g~~dG~-I~lWd~~~~ 282 (1107)
++..|+ |||+.+.++
T Consensus 191 ASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEG 206 (391)
T ss_pred eccCceEEEEEEcCCc
Confidence 999987 467766543
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=8.1e-11 Score=138.56 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=123.2
Q ss_pred CCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC---CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEE
Q 001287 56 DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 132 (1107)
Q Consensus 56 dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l 132 (1107)
+..|+|||.++.....+..|..++...+|+|||.+|+.++.+ ..|.+||+.+++........+...+.+|+|++++|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 468999999887776777888899999999999999988754 36999999988654333344555678999999988
Q ss_pred EEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccCC
Q 001287 133 YIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEA 210 (1107)
Q Consensus 133 ~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~~ 210 (1107)
+.+. .+|.+.||.++...+.+.+ +..+. ..+....|+| +|+.|+.++ .+|...||++...
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~------------~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTPSQ----LTSGA------------GNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCeEe----eccCC------------CCcCCEEECC--CCCEEEEEECCCCCceEEEEECC
Confidence 8764 6888888888876565543 33332 4577889988 677666554 5788888876542
Q ss_pred E-EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 211 Q-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 211 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
. ......+ .. .+..| +|||++|+..+.++ +.+||+.+
T Consensus 325 ~~~~~~l~~------------------------------~~--~~~~~-SpDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 325 GGGASLVGG------------------------------RG--YSAQI-SADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred CCCeEEecC------------------------------CC--CCccC-CCCCCEEEEEcCCC-EEEEECCC
Confidence 1 1111122 11 23556 59999998887754 55577754
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.33 E-value=2e-10 Score=125.64 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=129.1
Q ss_pred CEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEec
Q 001287 48 RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVIS 127 (1107)
Q Consensus 48 ~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~ 127 (1107)
..+++++.||++.|.+..+........|.+.|.+-.|+|||.-|++++.||.|++|.-.........+....|.|++|.|
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 47889999999999998776666778899999999999999999999999999999865544444457788999999999
Q ss_pred CCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEc
Q 001287 128 GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 207 (1107)
Q Consensus 128 ~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl 207 (1107)
+++-++-+. .+.++|-.+.... + +.+...|+ +-|.++.|+| ..+.+++|+.|-..+|||-
T Consensus 156 ~S~~vl~c~-g~h~~IKpL~~n~-k----~i~WkAHD------------GiiL~~~W~~--~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 156 NSNSIVFCQ-GGHISIKPLAANS-K----IIRWRAHD------------GLVLSLSWST--QSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred CCCceEEec-CCeEEEeeccccc-c----eeEEeccC------------cEEEEeecCc--cccceeecCCceeEEeecc
Confidence 986554433 3445554444321 2 23355666 7899999988 5677999999999999997
Q ss_pred cCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEE
Q 001287 208 SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1107)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~ 269 (1107)
....+.....| +-+||+++|. |+ ..++.++
T Consensus 216 ~G~~Lf~S~~~------------------------------ey~ITSva~n-pd-~~~~v~S 245 (737)
T KOG1524|consen 216 QGANLFTSAAE------------------------------EYAITSVAFN-PE-KDYLLWS 245 (737)
T ss_pred cCcccccCChh------------------------------ccceeeeeec-cc-cceeeee
Confidence 66554333222 7889999997 88 4444443
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=2.4e-10 Score=113.73 Aligned_cols=176 Identities=13% Similarity=0.143 Sum_probs=123.4
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~ 569 (1107)
+++|.++++++|+.+|+|-|..++.-.-.. ...+.+..-+...+|.++|..|+|. +.+|++++. |.|+=|.|....
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~s-a~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGS-AEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccc-cCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 688999999999999999999876322110 0111111113347899999999998 567777774 999999998753
Q ss_pred CCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCC
Q 001287 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1107)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~ 649 (1107)
.... .++...+.. +..+-...--.|.+|...|..+-+.+++.|+.++-||++++++. +.+.||+.
T Consensus 93 es~~-------~K~lwe~~~-----P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~---r~~rGHtD 157 (325)
T KOG0649|consen 93 ESLA-------TKRLWEVKI-----PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ---REYRGHTD 157 (325)
T ss_pred hhcc-------chhhhhhcC-----ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE---EEEcCCcc
Confidence 2100 011000000 00100112346899999998777777779999999999999988 68899999
Q ss_pred ceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceec
Q 001287 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1107)
Q Consensus 650 ~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~ 706 (1107)
-|.++.--.. ...+++|++||+|++||..|++.+.
T Consensus 158 YvH~vv~R~~----------------------~~qilsG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 158 YVHSVVGRNA----------------------NGQILSGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred eeeeeeeccc----------------------CcceeecCCCccEEEEeccccceeE
Confidence 9999986422 3459999999999999999988654
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.2e-10 Score=125.73 Aligned_cols=235 Identities=13% Similarity=0.146 Sum_probs=153.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc--eeeeCCCCCCEEEEEEEe--CCCEEEEEeCCCcEEEEEcC
Q 001287 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLE 106 (1107)
Q Consensus 31 ~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~--d~~~L~S~s~d~~I~vWDl~ 106 (1107)
..||.+-|.||+|+.+|.+||+|+.|-+|.|||.-..+ ...-.+|.+-|-++.|.| +...++|++.|..|+++|+.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 46899999999999999999999999999999984333 236678999999999998 45789999999999999998
Q ss_pred CCe----------eeeee-ccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCC
Q 001287 107 SRS----------LACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 107 s~~----------~~~~~-~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1107)
..+ .+... -|...|.-++..|++ ..+.++++||+++.+|+.....+ .+. ...+.....+ ..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c-~p~---~~~~~~l~ny---~~ 198 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC-NPD---EDCPSILVNY---NP 198 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC-Ccc---ccccHHHHHh---ch
Confidence 521 11222 366788899999999 57789999999999887641110 000 0000000000 00
Q ss_pred CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCCCCCCC-----CccccCCCC-CCC
Q 001287 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGD-----STFLEGISE-HQP 247 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~ 247 (1107)
..-...|+..+|+ ...+|++|.+|-..++||.+...... -.+.... ++... -...+.+.. ...
T Consensus 199 ~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~---------~pp~~~~cv~yf~p~hlkn~~gn 268 (758)
T KOG1310|consen 199 QLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT---------CPPKDCRCVRYFSPGHLKNSQGN 268 (758)
T ss_pred hhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccC---------CCCcccchhheecCccccCcccc
Confidence 1134678888888 56679999999999999953321100 0000000 00000 001111111 111
Q ss_pred CCCceeE---EEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 248 EEKEISA---LCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 248 ~~~~Vts---l~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
....+++ +.| +|+|.-|++....-.|+++|+..++
T Consensus 269 ~~~~~~~~t~vtf-npNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 269 LDRYITCCTYVTF-NPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred cccceeeeEEEEE-CCCCcEEEEeeCCeEEEEEeecCCC
Confidence 2334444 454 6999999888888889999987655
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.1e-10 Score=135.06 Aligned_cols=195 Identities=10% Similarity=0.032 Sum_probs=137.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCCcEEE--EEc
Q 001287 32 YGIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQV--WSL 105 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~d---g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~~I~v--WDl 105 (1107)
.++...+...+|+|||+.||..+.+ ..|++|++.+.+...+....+....++|+|||.+|+.++ .++.+.| ||+
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 3456678999999999999998754 469999997654433333334455789999999888775 5776555 577
Q ss_pred CCCeeeeeeccCCCeEEEEEecCCCEEEEE-cCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 106 ESRSLACCLKWESNITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 106 ~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
.++.......+...++..+|+|++++|+.. +.+|...||.++...+.... + .+. . .+..|
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----l-~~~------------~--~~~~~ 340 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----V-GGR------------G--YSAQI 340 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----e-cCC------------C--CCccC
Confidence 777665555566778899999999977654 46788999998865443321 2 111 2 34678
Q ss_pred ccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCE
Q 001287 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1107)
Q Consensus 185 ~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1107)
+| +|+.|+.++.++. .+||+.++........ ....+..| +|||++
T Consensus 341 Sp--DG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~-------------------------------~~~~~~~~-sPdG~~ 385 (429)
T PRK01742 341 SA--DGKTLVMINGDNV-VKQDLTSGSTEVLSST-------------------------------FLDESPSI-SPNGIM 385 (429)
T ss_pred CC--CCCEEEEEcCCCE-EEEECCCCCeEEecCC-------------------------------CCCCCceE-CCCCCE
Confidence 87 6887888777665 5599988865443211 01134567 499999
Q ss_pred EEEEEcCCcEEEEeCC
Q 001287 265 LAVGYIDGDILLWNTS 280 (1107)
Q Consensus 265 l~sg~~dG~I~lWd~~ 280 (1107)
|+.++.+|...+|.+.
T Consensus 386 i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 386 IIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEEcCCCceEEEEE
Confidence 9999999998888764
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=7.6e-09 Score=107.51 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=79.9
Q ss_pred ccccCCCCcEEEEEecCCc-EEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEec
Q 001287 488 ITKCHSVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1107)
Q Consensus 488 ~~~~s~~~~~laTgs~Dgt-IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~ 566 (1107)
+++...+|.++||++..|| |||||..++.+. ..++- ....+.|.||+|||++.+||++++.|+|.||.+.
T Consensus 186 cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l--~E~RR-------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 186 CVALNLQGTLVATASTKGTLIRIFDTEDGTLL--QELRR-------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred EEEEcCCccEEEEeccCcEEEEEEEcCCCcEe--eeeec-------CCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 3344556679999999999 999999999855 22221 1233579999999999999999999999999998
Q ss_pred CCCCCccceeeccCcCcceeccc-CCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q 001287 567 GSLDAKNFLFVLETKSEVHALPE-GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1107)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~i 629 (1107)
......... .+.+... ..++. -+.-..+..+....++..-++|-.+.+-++.-..||+.+=
T Consensus 257 ~~~~~~~~~-SSl~~~~-~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k 318 (346)
T KOG2111|consen 257 DTENTEDES-SSLSFKR-LVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYK 318 (346)
T ss_pred cCCCCcccc-ccccccc-cccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEE
Confidence 753211100 0000000 00110 0111123445556677777777776444444445575443
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.27 E-value=4.1e-10 Score=116.72 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=127.7
Q ss_pred CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe---eeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCC
Q 001287 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS---LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1107)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~---~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~ 151 (1107)
..||+|.+|++|+..++.+.+.++|.|+...... ..+.+ .|...|+++.|.|..+.+++++.|.+-+||.... ++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~-~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS-GG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC-CC
Confidence 4689999999999999999999999999988775 45555 6889999999999999999999999999999732 23
Q ss_pred ceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCC
Q 001287 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1107)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~ 231 (1107)
+..+. ..+..+. .+.++|.|+| ..+.+++|+....|.||-++...--++..|..-.+
T Consensus 89 ~Wkpt-lvLlRiN------------rAAt~V~WsP--~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi-------- 145 (361)
T KOG1523|consen 89 TWKPT-LVLLRIN------------RAATCVKWSP--KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI-------- 145 (361)
T ss_pred eeccc-eeEEEec------------cceeeEeecC--cCceEEeccCccEEEEEEEecccceehhhhhCCcc--------
Confidence 33322 1122222 6799999999 46669999999999999877765544444411111
Q ss_pred CCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeC
Q 001287 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1107)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~ 279 (1107)
+..|+++.|+ |++-.|++|+.|+..+++..
T Consensus 146 -----------------rStv~sldWh-pnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 146 -----------------RSTVTSLDWH-PNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred -----------------ccceeeeecc-CCcceecccccCcceeEEEE
Confidence 6679999998 99999999999999999875
No 213
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.25 E-value=4.2e-06 Score=105.83 Aligned_cols=477 Identities=15% Similarity=0.131 Sum_probs=259.9
Q ss_pred CCeEEEEEcCCCCEE--EEEECCC--cEEEEeCC--C-cceeeeC------CCCCCEEEEEEEeCCCEEEEEeCCCcEEE
Q 001287 36 ATASILAFDHIQRLL--AIATLDG--RIKVIGGD--G-IEGLLIS------PSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1107)
Q Consensus 36 ~~i~~lafsp~~~~L--A~Gs~dg--~I~iw~~~--~-~~~~~~~------~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1107)
..+...+|++....+ +.+.... .|.+.... . .+.+... ...+.|.++.|.++...|+.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 356677787766544 3343332 23333321 1 1122111 23468999999999999999999999999
Q ss_pred E----EcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC---Cceee------cceeeccccc----
Q 001287 103 W----SLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE---GKLFQ------LPYNISADAL---- 165 (1107)
Q Consensus 103 W----Dl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~---~~l~~------~~~~i~~~~~---- 165 (1107)
. |..+..+-..-..+..|.|++|+||...|++.+.+|++.+..-+-+. ..+.. .+..+.+..+
T Consensus 102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF 181 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF 181 (928)
T ss_pred EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence 9 66666555444677899999999999999999999988776532100 00000 0001111100
Q ss_pred ----cccc-------CCC------CCCCCCeEEEEcccCCCCCEEEEEEC---C---CeEEEEEccCCEEEEEeCCcccc
Q 001287 166 ----SEKA-------GFP------LLSHQPVVGVLPHPNSSGNRVLIAYE---N---ALVILWDVSEAQIIFVGGGKDLQ 222 (1107)
Q Consensus 166 ----~~~~-------~~~------~~~~~~V~~v~f~P~~~~~~ll~~~~---d---g~V~vwdl~~~~~~~~~g~~~~~ 222 (1107)
.|.. ..+ ....+.-..|+| +.||.++++.+- . ..++||+-+ |.+......
T Consensus 182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~---- 254 (928)
T PF04762_consen 182 HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP---- 254 (928)
T ss_pred CcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc----
Confidence 0100 000 002345678899 669999888775 2 478899866 443322211
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc---CCcEEEEeCCCCCCCCCccCCCCCceeee
Q 001287 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI---DGDILLWNTSTTASTKGQQTGSRNNVVKL 299 (1107)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~---dG~I~lWd~~~~~~~~~~~~~~~~~~~~l 299 (1107)
. .+--.+++|- |.|+.|++.-. .-.|.+|.-+... ...+
T Consensus 255 ------------v-------------~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLr------------hgeF 296 (928)
T PF04762_consen 255 ------------V-------------DGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLR------------HGEF 296 (928)
T ss_pred ------------C-------------CCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcE------------eeeE
Confidence 0 2223468997 99999998865 4567777765432 1112
Q ss_pred ecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccC
Q 001287 300 ELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSS 379 (1107)
Q Consensus 300 ~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~ 379 (1107)
.++.......+..+.|+. ++.+|+..-.+ .+.||....- ..+-...+.++....+..+.+.|.
T Consensus 297 ~l~~~~~~~~v~~l~Wn~--------ds~iLAv~~~~--------~vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNS--------DSEILAVWLED--------RVQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred ecCCCCCCceeeEEEECC--------CCCEEEEEecC--------CceEEEeeCC-EEEEEEEEEccCCCCCCceEECCC
Confidence 222222334566677766 44555555444 3566654421 111122244444555555788887
Q ss_pred CCCCCCCCcceEEEEccCCeEEEEeccceeeeecccCCCCCCCCccCCcccccCCCceeEEEEEeccCCCCCchhhhHHH
Q 001287 380 AGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIA 459 (1107)
Q Consensus 380 ~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~ 459 (1107)
++..+.+++.+|++..++..-.... ....+ .++..+ ..+ +.+..
T Consensus 360 -------~p~~L~v~t~~g~~~~~~~~~~v~~------s~~~~---------~~D~g~--vaV--IDG~~---------- 403 (928)
T PF04762_consen 360 -------KPLRLHVLTSNGQYEIYDFAWDVSR------SPGSS---------PNDNGT--VAV--IDGNK---------- 403 (928)
T ss_pred -------CCCEEEEEecCCcEEEEEEEEEEEe------cCCCC---------ccCceE--EEE--EeCCe----------
Confidence 5667888888888877663211110 00000 000000 000 00000
Q ss_pred hhccccCCCCccCCccccccC---CCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEE--Eeeccceee-----
Q 001287 460 TFTKLHSSHTQAGHIKWPLSG---GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLI--CALDAEVQG----- 529 (1107)
Q Consensus 460 ~~~~~~~~~~~~~~~~wp~~g---g~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~--~~l~~~~~~----- 529 (1107)
..-+++...+...|+.. ..+..+..+++++++..+++-..||+|.+|.......... ..+......
T Consensus 404 ----lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (928)
T PF04762_consen 404 ----LLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDI 479 (928)
T ss_pred ----EEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccc
Confidence 00012222233333322 2234556678888888899999999999998554321100 000000000
Q ss_pred eeecCCCCCeEEEEEEeCCCeEEEeccC---ceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCE
Q 001287 530 IEVAGSRAPVSTLSFCFINSSLAVGNEF---GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV 606 (1107)
Q Consensus 530 ~~l~~h~~~Vt~l~fspd~~~Lasg~~d---g~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~V 606 (1107)
.....-...+..++|..++..++....+ ..+.++++...... ..+.....-.+.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~~~~~~~ 537 (928)
T PF04762_consen 480 SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS----------------------ASVESSTEVDGVV 537 (928)
T ss_pred cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc----------------------eeEEEEeccCceE
Confidence 0011123468899999988877766654 67777777433110 1223333446667
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCe
Q 001287 607 RALQFTSSGAKLAVGFECGRVAVLDMNLLS 636 (1107)
Q Consensus 607 t~la~sp~~~~la~Gs~dg~V~iwd~~~~~ 636 (1107)
..+...++...++.=..+|.|..++..+..
T Consensus 538 ~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 538 LIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 777777766657777789988866665543
No 214
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.3e-10 Score=126.31 Aligned_cols=218 Identities=16% Similarity=0.135 Sum_probs=152.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCc--ceeeeCCCCCCEEEEEEEeC--CCEEEEEeCCCcEEEEEcCC
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQN--QGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~--~~~~~~~h~~~V~~l~fs~d--~~~L~S~s~d~~I~vWDl~s 107 (1107)
-+|++.|..+-|...|.+|++|+.|-+|.+||-... ..-+..+|...|-.-.|.|. ..-+++++.||.+++=.+..
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 478889999999999999999999999999998443 34478889888877778774 35789999999999988644
Q ss_pred -Ceee---eeeccCCCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 108 -RSLA---CCLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 108 -~~~~---~~~~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
+.+. ....|.++|.-+++.|+.. -++++++|+.|.-+++......... +.-..+. .+ .-....+
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~--~cr~~~~-~~--------~v~L~~I 287 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF--VCREADE-KE--------RVGLYTI 287 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee--eeeccCC-cc--------ceeeeeE
Confidence 3332 2337899999999999985 5778899998877776543222111 1111111 00 1246788
Q ss_pred EcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC
Q 001287 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1107)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1107)
+.+|...+ .++++..|-.+++||...-......+. + ..+..+.+-. ...-.|+|++|. .++
T Consensus 288 a~~P~nt~-~faVgG~dqf~RvYD~R~~~~e~~n~~----~-----------~~f~p~hl~~--d~~v~ITgl~Ys-h~~ 348 (559)
T KOG1334|consen 288 AVDPRNTN-EFAVGGSDQFARVYDQRRIDKEENNGV----L-----------DKFCPHHLVE--DDPVNITGLVYS-HDG 348 (559)
T ss_pred ecCCCCcc-ccccCChhhhhhhhcccchhhccccch----h-----------hhcCCccccc--cCcccceeEEec-CCc
Confidence 99998444 599999999999999766432211110 0 0001111111 226689999974 788
Q ss_pred CEEEEEEcCCcEEEEeC
Q 001287 263 SILAVGYIDGDILLWNT 279 (1107)
Q Consensus 263 ~~l~sg~~dG~I~lWd~ 279 (1107)
.-|++.+.|-.|++++-
T Consensus 349 sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 349 SELLASYNDEDIYLFNK 365 (559)
T ss_pred cceeeeecccceEEecc
Confidence 89999999999999943
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1e-10 Score=127.11 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=85.7
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee--ccCCCeEEEEEecCC--CEEEEEcCCCcEEEEEe
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGS--HFMYIGDENGLMSVIKY 146 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~--~~~~~Vt~l~~~~~~--~~l~~g~~dg~V~vw~~ 146 (1107)
.+.+|.+.|..|.|...|..|+|+|.|..|.+|||.++.....+ +|...|..-.|.|.. .-+++.+.||.|++-.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 45679999999999999999999999999999999999877665 566667666677653 57888899999988665
Q ss_pred ecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
.... .... +-.+..|. ++|.-++.-|.... .|++++.|+.|.-+|++.+
T Consensus 217 ~~t~-~~e~-t~rl~~h~------------g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 217 LETG-YVEN-TKRLAPHE------------GPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred cccc-ceec-ceeccccc------------CccceeeecCCCCC-cccccccccceeeeeeccC
Confidence 5321 1111 01122222 55666666554222 3666666666655554443
No 216
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.23 E-value=1.8e-09 Score=129.26 Aligned_cols=210 Identities=18% Similarity=0.208 Sum_probs=141.0
Q ss_pred eeecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCcc--------eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCc
Q 001287 29 AVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIE--------GLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~-~~LA~Gs~dg~I~iw~~~~~~--------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~ 99 (1107)
+..|-|...+..+|.++.. .++++|+.||+||+|+....+ .+.......++.++.+.+++.+++.++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 3346777777788877665 999999999999999974332 1233345679999999999999999999999
Q ss_pred EEEEEcCCC--e-eee--ee----ccCCCeEE-EEEecC--CCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 100 IQVWSLESR--S-LAC--CL----KWESNITA-FSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 100 I~vWDl~s~--~-~~~--~~----~~~~~Vt~-l~~~~~--~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
|++.+++-. . ... .. ...+.+.. -++... +..++.+...+.|..||......- +++..
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-----w~lk~----- 1191 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-----WRLKN----- 1191 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-----Hhhhc-----
Confidence 999998762 1 111 11 12233333 333332 236777778888888886532111 11221
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
...++.|++++-.| .+..+++|.+.|.+.+||++=+..+....|- .
T Consensus 1192 -----~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P------------~--------------- 1237 (1431)
T KOG1240|consen 1192 -----QLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP------------A--------------- 1237 (1431)
T ss_pred -----CccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCc------------c---------------
Confidence 11237899999988 5778999999999999999988776655440 0
Q ss_pred CCCceeE--EEeecCCCCEEEEEE--cCCcEEEEeCCCCC
Q 001287 248 EEKEISA--LCWASSSGSILAVGY--IDGDILLWNTSTTA 283 (1107)
Q Consensus 248 ~~~~Vts--l~w~spdg~~l~sg~--~dG~I~lWd~~~~~ 283 (1107)
..+++. +|...+.....++++ ..+.|.+|++.++.
T Consensus 1238 -~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1238 -RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred -cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 233443 333334445555554 47889999999884
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=9.5e-09 Score=120.79 Aligned_cols=174 Identities=11% Similarity=0.128 Sum_probs=116.3
Q ss_pred cEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC---CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEE
Q 001287 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1107)
Q Consensus 58 ~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~---d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~ 134 (1107)
.|.+||.++.....+..+...+...+|||||.+|+.++. +..|.+||+.+++........+.+....|+|++++|+.
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 699999987766656667789999999999999987753 35699999999876554455566678899999998876
Q ss_pred E-cCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECC-CeEEEE--EccCC
Q 001287 135 G-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-ALVILW--DVSEA 210 (1107)
Q Consensus 135 g-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d-g~V~vw--dl~~~ 210 (1107)
. +.+|...||.++..++++.+ +..+. ..+....|+| +|+.|+..+.+ |...|| |+.++
T Consensus 260 ~~~~~g~~~I~~~d~~tg~~~~----lt~~~------------~~~~~~~wSP--DG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQIRQ----VTDGR------------SNNTEPTWFP--DSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred EEcCCCCcEEEEEECCCCCEEE----ccCCC------------CCcCceEECC--CCCEEEEEeCCCCCceEEEEECCCC
Confidence 5 55665445555554555554 22222 3467889988 68877776654 444444 66666
Q ss_pred EEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC---cEEEEeCC
Q 001287 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTS 280 (1107)
Q Consensus 211 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG---~I~lWd~~ 280 (1107)
....+... .....+.+| +|||++|+..+.++ .|.+||+.
T Consensus 322 ~~~~lt~~------------------------------~~~~~~~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 322 APQRITWE------------------------------GSQNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred CeEEeecC------------------------------CCCccCEEE-CCCCCEEEEEEccCCCceEEEEECC
Confidence 54433211 223345676 49999987765432 35555554
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=5.2e-09 Score=123.00 Aligned_cols=198 Identities=14% Similarity=0.050 Sum_probs=138.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-CCC--cEEEEEcCC
Q 001287 34 IPATASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDN--EIQVWSLES 107 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~---dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d~--~I~vWDl~s 107 (1107)
.+..+...+|+|||+.||..+. +..|++|++.+.+...+....+.+..+.|+|||.+|+... .++ .|.+||+.+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3556889999999999997653 3579999987765554444555567899999999888653 344 599999999
Q ss_pred CeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
+...........+....|+|++++|+..+ .+|...||.++...+...+ +.... .......|+|
T Consensus 277 g~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~----lt~~~------------~~~~~~~~Sp 340 (429)
T PRK03629 277 GQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR----ITWEG------------SQNQDADVSS 340 (429)
T ss_pred CCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE----eecCC------------CCccCEEECC
Confidence 87765555556788999999999886555 4566778887766555443 22211 2355678888
Q ss_pred CCCCCEEEEEECC---CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC
Q 001287 187 NSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1107)
Q Consensus 187 ~~~~~~ll~~~~d---g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1107)
+|++++....+ ..|.+||+.++....+... ....+..|. |||+
T Consensus 341 --DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-------------------------------~~~~~p~~S-pDG~ 386 (429)
T PRK03629 341 --DGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-------------------------------FLDETPSIA-PNGT 386 (429)
T ss_pred --CCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-------------------------------CCCCCceEC-CCCC
Confidence 68777766544 3578899988865443311 011235664 9999
Q ss_pred EEEEEEcCCc---EEEEeCCC
Q 001287 264 ILAVGYIDGD---ILLWNTST 281 (1107)
Q Consensus 264 ~l~sg~~dG~---I~lWd~~~ 281 (1107)
+|+..+.+|. +.+|++..
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEEEEEcCCCceEEEEEECCC
Confidence 9999988765 66777643
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=1.3e-08 Score=107.03 Aligned_cols=166 Identities=18% Similarity=0.242 Sum_probs=118.5
Q ss_pred CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeecc--CCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCc
Q 001287 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW--ESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGK 152 (1107)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~--~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~ 152 (1107)
+..++.++|+++--.++++..|-.|+++|-.+ ...+.+++ ...|+|++|-|-+ .-+++|+..| |.+|..+.. ..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~t-ln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRT-LN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcc-cc
Confidence 44688899999766788999999999999888 44455543 4689999999875 5889999988 689987741 11
Q ss_pred eeeccee-ecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccCCEEEEEeCCccccccccccCC
Q 001287 153 LFQLPYN-ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1107)
Q Consensus 153 l~~~~~~-i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~ 230 (1107)
... +.+ ...+. .--+..+.+.+|++++|++ +|.++++++ .|..|+|||.+++..+.+.-.
T Consensus 175 ~~r-~~~~~s~~~---~qvl~~pgh~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~------------ 236 (445)
T KOG2139|consen 175 ANR-NIRMMSTHH---LQVLQDPGHNPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTGQKIPLIPK------------ 236 (445)
T ss_pred ccc-ccccccccc---hhheeCCCCceeeEEEEcC--CCCEEeecccCcceEEEEcCCCCCccccccc------------
Confidence 111 000 01111 0011223347899999987 688788765 567999999999876654311
Q ss_pred CCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
+ .+.++-+-|. |||.+|+++.-|+..++|+..
T Consensus 237 --------g---------lgg~slLkwS-Pdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 237 --------G---------LGGFSLLKWS-PDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred --------C---------CCceeeEEEc-CCCCEEEEecccceeeeehhc
Confidence 0 4567778885 999999999999999999764
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.6e-09 Score=117.31 Aligned_cols=281 Identities=14% Similarity=0.192 Sum_probs=179.2
Q ss_pred eeeecCCCCCeEEEEEcCCCCE-EEEEECCCcEEEEeCCCcceeeeCCCCC-CEEEEEEEeCCCEEEEEeCCCcEEEEEc
Q 001287 28 IAVHYGIPATASILAFDHIQRL-LAIATLDGRIKVIGGDGIEGLLISPSQL-PYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~~~-LA~Gs~dg~I~iw~~~~~~~~~~~~h~~-~V~~l~fs~d~~~L~S~s~d~~I~vWDl 105 (1107)
+...+++|..-+.|..+|||+| ||+|.....|++||+.+..+.+...-.+ .|...-.+.|-..++-...|.+|.+-.-
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 5566899999999999999996 5899999999999999888777666555 4555555666566777777888877554
Q ss_pred CCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 106 ~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
-.......+ +..-..++++.-+.-|++++....| +.+..+.|.+.. ||.... +.+.+|..+
T Consensus 124 ~G~hy~~RI--P~~GRDm~y~~~scDly~~gsg~ev--YRlNLEqGrfL~-P~~~~~--------------~~lN~v~in 184 (703)
T KOG2321|consen 124 YGRHYRTRI--PKFGRDMKYHKPSCDLYLVGSGSEV--YRLNLEQGRFLN-PFETDS--------------GELNVVSIN 184 (703)
T ss_pred cCeeeeeec--CcCCccccccCCCccEEEeecCcce--EEEEcccccccc-cccccc--------------ccceeeeec
Confidence 333222222 2222334444333334444444444 555555677765 455543 557888887
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEE
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l 265 (1107)
|. ..+|++|..+|.|-.||.+....+........ +. ..+. ......|+++.|. .+|-.+
T Consensus 185 ~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-----v~----s~pg---------~~~~~svTal~F~-d~gL~~ 243 (703)
T KOG2321|consen 185 EE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-----VN----SHPG---------GDAAPSVTALKFR-DDGLHV 243 (703)
T ss_pred Cc--cceEEecccCceEEEecchhhhhheeeecccc-----cC----CCcc---------ccccCcceEEEec-CCceeE
Confidence 74 44688899999999999988654332211000 00 0000 0115579999974 779999
Q ss_pred EEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccccCCCCCceEEEEeCCCCCCcceEEE
Q 001287 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1107)
Q Consensus 266 ~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~d~~llv~gg~~~~~~~~ltv 345 (1107)
++|..+|.+.+||+.+.... . ........||..++|... .+...+++.... +
T Consensus 244 aVGts~G~v~iyDLRa~~pl-----------~---~kdh~~e~pi~~l~~~~~------~~q~~v~S~Dk~--------~ 295 (703)
T KOG2321|consen 244 AVGTSTGSVLIYDLRASKPL-----------L---VKDHGYELPIKKLDWQDT------DQQNKVVSMDKR--------I 295 (703)
T ss_pred EeeccCCcEEEEEcccCCce-----------e---ecccCCccceeeeccccc------CCCceEEecchH--------H
Confidence 99999999999999866322 1 122224567888877542 233344444433 7
Q ss_pred EEcCccccccccceeeeeeecCCCccceEEEccCCC
Q 001287 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1107)
Q Consensus 346 l~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~ 381 (1107)
+++|....-+.. ..+.....+.|+++.|+++
T Consensus 296 ~kiWd~~~Gk~~-----asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 296 LKIWDECTGKPM-----ASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred hhhcccccCCce-----eeccccCCcCceeeecCCc
Confidence 888876532322 4445555788999999854
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.13 E-value=7.5e-08 Score=109.85 Aligned_cols=192 Identities=16% Similarity=0.223 Sum_probs=118.9
Q ss_pred CEEEEE-ECCCcEEEEeCCCcceeeeCCCCCC-EEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEE
Q 001287 48 RLLAIA-TLDGRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1107)
Q Consensus 48 ~~LA~G-s~dg~I~iw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~ 125 (1107)
.++++. ..+|.|.|.|....+.+-..+.... -..+.|++||++++.++.|+.|.++|+.+++.+..+........+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence 445444 4579999999988776644443333 34578999999999999999999999999999999988888899999
Q ss_pred ecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CCeEE
Q 001287 126 ISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVI 203 (1107)
Q Consensus 126 ~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~ 203 (1107)
+++++++++++ ..+.+.|+|.. +.++.+. ++....... .....+.+|..+|. ...+++.-. .+.|.
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~--tle~v~~---I~~~~~~~~-----~~~~Rv~aIv~s~~--~~~fVv~lkd~~~I~ 153 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAE--TLEPVKT---IPTGGMPVD-----GPESRVAAIVASPG--RPEFVVNLKDTGEIW 153 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETT--T--EEEE---EE--EE-TT-----TS---EEEEEE-SS--SSEEEEEETTTTEEE
T ss_pred cCCCCEEEEEecCCCceeEeccc--cccceee---ccccccccc-----ccCCCceeEEecCC--CCEEEEEEccCCeEE
Confidence 99999999887 57888776643 3455532 443321000 01245777777663 333454444 47766
Q ss_pred EEEccCCEEE--EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEE-EcCCcEEEEeCC
Q 001287 204 LWDVSEAQII--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTS 280 (1107)
Q Consensus 204 vwdl~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg-~~dG~I~lWd~~ 280 (1107)
+-|....+.. ..... ........|. |+|++++++ ..+..|.++|..
T Consensus 154 vVdy~d~~~~~~~~i~~------------------------------g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKV------------------------------GRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp EEETTTSSCEEEEEEE--------------------------------TTEEEEEE--TTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEeccccccceeeecc------------------------------cccccccccC-cccceeeecccccceeEEEeec
Confidence 6676554322 11111 2234456665 999987665 456788889876
Q ss_pred CC
Q 001287 281 TT 282 (1107)
Q Consensus 281 ~~ 282 (1107)
+.
T Consensus 203 ~~ 204 (369)
T PF02239_consen 203 TG 204 (369)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 222
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.12 E-value=6.5e-09 Score=110.06 Aligned_cols=191 Identities=14% Similarity=0.175 Sum_probs=144.8
Q ss_pred EEEEcCCCCEEEEEECC--CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec--
Q 001287 40 ILAFDHIQRLLAIATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-- 115 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~d--g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~-- 115 (1107)
-+-|+ ..++|+.+.+ ..+++++......+...--..+|-++.+..+ +|+.+=.+. |.|+|+.+.++++++.
T Consensus 51 EmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~ 125 (391)
T KOG2110|consen 51 EMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETT 125 (391)
T ss_pred Eeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhcc
Confidence 34555 4677776665 3488999887777766666778999988765 455555443 9999999999998873
Q ss_pred --cCCCeEEEEEecCCCEEEEEc--CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 116 --WESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 116 --~~~~Vt~l~~~~~~~~l~~g~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
.+..+.+++++..+.+++.=+ ..|.|.+|+.... .. .-.|..|. +++-+++|+| +|.
T Consensus 126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl----~~-v~~I~aH~------------~~lAalafs~--~G~ 186 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL----QP-VNTINAHK------------GPLAALAFSP--DGT 186 (391)
T ss_pred CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc----ee-eeEEEecC------------CceeEEEECC--CCC
Confidence 345688999998888888543 4699999997742 22 13377777 9999999988 799
Q ss_pred EEEEEECCCe-EEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001287 192 RVLIAYENAL-VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1107)
Q Consensus 192 ~ll~~~~dg~-V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1107)
+|++|+..|+ ||||.+.+++.+.-+... .. .-.|.+++|. |++++|.+.+.
T Consensus 187 llATASeKGTVIRVf~v~~G~kl~eFRRG-------~~--------------------~~~IySL~Fs-~ds~~L~~sS~ 238 (391)
T KOG2110|consen 187 LLATASEKGTVIRVFSVPEGQKLYEFRRG-------TY--------------------PVSIYSLSFS-PDSQFLAASSN 238 (391)
T ss_pred EEEEeccCceEEEEEEcCCccEeeeeeCC-------ce--------------------eeEEEEEEEC-CCCCeEEEecC
Confidence 9999999995 579999998765432110 00 4568899975 99999999999
Q ss_pred CCcEEEEeCCCC
Q 001287 271 DGDILLWNTSTT 282 (1107)
Q Consensus 271 dG~I~lWd~~~~ 282 (1107)
.++|+++.+...
T Consensus 239 TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 239 TETVHIFKLEKV 250 (391)
T ss_pred CCeEEEEEeccc
Confidence 999999999754
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=5.7e-09 Score=123.23 Aligned_cols=198 Identities=15% Similarity=0.120 Sum_probs=135.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEE-EEeCCC--cEEEEEcCC
Q 001287 34 IPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDN--EIQVWSLES 107 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~d---g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~-S~s~d~--~I~vWDl~s 107 (1107)
+...+...+|+||++.||..+.+ ..|++|++.+.+...+..+.+...++.|+|||.+|+ +.+.++ .|.+||+.+
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence 45568889999999999988744 469999997766655555566667899999998775 445554 599999999
Q ss_pred CeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
++......+....+..+|+|++++|+..+ .+|...+|.++..++...+ +..+. .......|+|
T Consensus 282 g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~~g------------~~~~~~~~Sp 345 (433)
T PRK04922 282 RQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTFQG------------NYNARASVSP 345 (433)
T ss_pred CCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eecCC------------CCccCEEECC
Confidence 87655445555567889999999887665 5666667777655555443 22111 2244678988
Q ss_pred CCCCCEEEEEECCC---eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC
Q 001287 187 NSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg---~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1107)
+|+.++....++ .|.+||+.+++...+. + ........|. |||+
T Consensus 346 --DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~------------------------------~~~~~~p~~s-pdG~ 391 (433)
T PRK04922 346 --DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P------------------------------GSLDESPSFA-PNGS 391 (433)
T ss_pred --CCCEEEEEECCCCceeEEEEECCCCCeEECC-C------------------------------CCCCCCceEC-CCCC
Confidence 677777665443 6889999887655332 1 1112235675 9999
Q ss_pred EEEEEEcC---CcEEEEeCCC
Q 001287 264 ILAVGYID---GDILLWNTST 281 (1107)
Q Consensus 264 ~l~sg~~d---G~I~lWd~~~ 281 (1107)
+|+..+.+ +.|.+|+...
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEEEecCCceEEEEEECCC
Confidence 88777653 3577777743
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=2.7e-08 Score=117.71 Aligned_cols=177 Identities=11% Similarity=0.128 Sum_probs=126.8
Q ss_pred CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC---CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEE
Q 001287 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1107)
Q Consensus 57 g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~---d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~ 133 (1107)
..|.+||.++.....+..|..++.+.+|+|||.+|+.++. +..|.+||+.+++......+.+.+.+.+|+|+++.|+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 3788999888777777788889999999999999988874 4679999999987655556677788999999998775
Q ss_pred -EEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CC--eEEEEEccC
Q 001287 134 -IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSE 209 (1107)
Q Consensus 134 -~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg--~V~vwdl~~ 209 (1107)
+.+.+|...||.++...+.+.+ +..+. .......|+| +|++|+..+. +| .|.+||+.+
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~------------~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTTTR----LTDSP------------AIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred EEEecCCCceEEEEECCCCceEE----ccCCC------------CccCceeEcC--CCCEEEEEECCCCCCeEEEEECCC
Confidence 5566776666666665555543 33222 3356678988 6877777664 33 677888877
Q ss_pred CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC---CcEEEEeCCCC
Q 001287 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTSTT 282 (1107)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d---G~I~lWd~~~~ 282 (1107)
+....+..+ ...+....|. |||+.|+....+ ..|.+||..++
T Consensus 324 ~~~~~lt~~------------------------------~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 324 SNPRRISFG------------------------------GGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCeEEeecC------------------------------CCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCC
Confidence 765544322 2345567785 999999877654 25777886543
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.1e-08 Score=121.06 Aligned_cols=200 Identities=10% Similarity=0.039 Sum_probs=136.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEE-EEeCCCc--EEEEEcC
Q 001287 33 GIPATASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNE--IQVWSLE 106 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~---dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~-S~s~d~~--I~vWDl~ 106 (1107)
.+...+...+|+|||+.||..+. +..|++|++.+.+...+..+.+.+....|+|||..|+ +.+.++. |.+||+.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 45667899999999999998864 4689999998776666667778888999999998875 4455544 8888999
Q ss_pred CCeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 107 s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
++.......+.+..+..+|+|++++|+..+ .+|...||.++...+...+ +..+. ..+....|+
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~----lt~~~------------~~~~~~~~S 342 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR----ISFGG------------GRYSTPVWS 342 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE----eecCC------------CcccCeEEC
Confidence 887765555666677899999999887665 4555555655554454443 22111 345667898
Q ss_pred cCCCCCEEEEEECCC---eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC
Q 001287 186 PNSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg---~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1107)
| +|++|+....++ .|.+||+.++....+. . ...+.+..|. |||
T Consensus 343 p--dG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~------------------------------~~~~~~p~~s-pDG 388 (435)
T PRK05137 343 P--RGDLIAFTKQGGGQFSIGVMKPDGSGERILT-S------------------------------GFLVEGPTWA-PNG 388 (435)
T ss_pred C--CCCEEEEEEcCCCceEEEEEECCCCceEecc-C------------------------------CCCCCCCeEC-CCC
Confidence 8 677777665432 5778887665432221 0 1124456775 999
Q ss_pred CEEEEEEcC------CcEEEEeCCCC
Q 001287 263 SILAVGYID------GDILLWNTSTT 282 (1107)
Q Consensus 263 ~~l~sg~~d------G~I~lWd~~~~ 282 (1107)
+.|+..+.+ ..|.++++.+.
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCC
Confidence 998776543 24666666543
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=2.5e-08 Score=117.32 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=123.4
Q ss_pred CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC---CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEE
Q 001287 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1107)
Q Consensus 57 g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~ 133 (1107)
..|.++|.++.....+..+..++.+.+|+|||.+|+.++.+ ..|.+||+.+++........+.+.+.+|+|+++.|+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 46778888776655566788899999999999999888753 359999999987655445566778899999999887
Q ss_pred -EEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CCeEEEEEc--cC
Q 001287 134 -IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDV--SE 209 (1107)
Q Consensus 134 -~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~vwdl--~~ 209 (1107)
+.+.+|...||.++...+.+.+ +..+. ..+....|+| +|++|+..+. +|...||.+ .+
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~------------~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLRR----LTQSS------------GIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred EEEccCCCceEEEEECCCCCcEE----CCCCC------------CCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCC
Confidence 5677888889988876555443 33222 3355678988 6877776654 455566654 44
Q ss_pred CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC---cEEEEeCCCC
Q 001287 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 282 (1107)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG---~I~lWd~~~~ 282 (1107)
+....+... ........| +|||++|+..+.++ .|.+||+.++
T Consensus 318 g~~~~lt~~------------------------------g~~~~~~~~-SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 318 GAAQRVTFT------------------------------GSYNTSPRI-SPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CceEEEecC------------------------------CCCcCceEE-CCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 443322211 112234567 59999998777654 5999998765
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.05 E-value=3.6e-07 Score=109.03 Aligned_cols=193 Identities=15% Similarity=0.121 Sum_probs=150.7
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCE-----EEEEEEeCCCEEEEEeCCCcEEEEEcCC-Ceeeeee
Q 001287 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPY-----KNLEFLQNQGFLISITNDNEIQVWSLES-RSLACCL 114 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V-----~~l~fs~d~~~L~S~s~d~~I~vWDl~s-~~~~~~~ 114 (1107)
..+.-+.+.+|+++.+..+-||+......+....+.... .-+.++++.-++++++.-+.|.+|+..- .......
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 455567889999999999999999888777777776633 3344567777999999999999999863 2344566
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.|++.|.++.++.++.++++.+.|.++++|.++..+ .. +-..-+|. ..|..+.|+|. +++
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~--~~--~~~~fgHs------------aRvw~~~~~~n----~i~ 232 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE--VL--GCTGFGHS------------ARVWACCFLPN----RII 232 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeeccccc--cc--Cccccccc------------ceeEEEEeccc----eeE
Confidence 899999999999999999999999999999998632 11 11123444 78999999774 699
Q ss_pred EEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcE
Q 001287 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I 274 (1107)
+++.|.+.++|+........+.+|. .+.+..+.. .++...+++++.||.+
T Consensus 233 t~gedctcrvW~~~~~~l~~y~~h~-----------------------------g~~iw~~~~-~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQLEVYDEHS-----------------------------GKGIWKIAV-PIGVIIKVTGGNDSTL 282 (967)
T ss_pred EeccceEEEEEecccceehhhhhhh-----------------------------hcceeEEEE-cCCceEEEeeccCcch
Confidence 9999999999987777666555551 445666774 3777788999999999
Q ss_pred EEEeCCCCC
Q 001287 275 LLWNTSTTA 283 (1107)
Q Consensus 275 ~lWd~~~~~ 283 (1107)
++|+.....
T Consensus 283 k~~~l~~r~ 291 (967)
T KOG0974|consen 283 KLWDLNGRG 291 (967)
T ss_pred hhhhhhccc
Confidence 999997653
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.03 E-value=1.5e-09 Score=119.54 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=90.3
Q ss_pred cceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceee-eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 25 NLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 25 ~~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
+|....+.|-. .|..++|+|||++||+-+.||.+|||+++..+++- ...-=+...|++|||||+|+++++.|.-|.||
T Consensus 281 NPv~~w~~~~g-~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 281 NPVARWHIGEG-SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CccceeEeccc-cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 77788887754 89999999999999999999999999999988763 33344689999999999999999999999999
Q ss_pred EcCCCeeeee-eccCCCeEEEEEec
Q 001287 104 SLESRSLACC-LKWESNITAFSVIS 127 (1107)
Q Consensus 104 Dl~s~~~~~~-~~~~~~Vt~l~~~~ 127 (1107)
.+..++++.. ..|..-|+.++|+|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999988765 58999999999997
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2.1e-08 Score=117.94 Aligned_cols=190 Identities=11% Similarity=0.090 Sum_probs=129.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEE-EEeCCCcEEEE--EcC
Q 001287 33 GIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVW--SLE 106 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~d---g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~-S~s~d~~I~vW--Dl~ 106 (1107)
..+..+.+.+|+||++.||..+.+ ..|++|++.+.+...+....+.+....|+|||..|+ +.+.++...|| |+.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 445678899999999999988753 459999997766555555556778999999998886 45667775655 455
Q ss_pred CCeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 107 s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
++.......+.+.++...|+|++++|+..+ .+|...||.++...+...+. ...+ .......|+
T Consensus 273 ~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l--t~~g--------------~~~~~~~~S 336 (427)
T PRK02889 273 GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV--TFTG--------------SYNTSPRIS 336 (427)
T ss_pred CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE--ecCC--------------CCcCceEEC
Confidence 555433334455567789999999887554 45778888887655554332 1111 223456788
Q ss_pred cCCCCCEEEEEECCC---eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCC
Q 001287 186 PNSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg---~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg 262 (1107)
| +|+.++..+.++ .|.+||+.+++...+... .......|. |||
T Consensus 337 p--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-------------------------------~~~~~p~~s-pdg 382 (427)
T PRK02889 337 P--DGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-------------------------------TRDESPSFA-PNG 382 (427)
T ss_pred C--CCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-------------------------------CCccCceEC-CCC
Confidence 8 788777766554 689999988765443211 112346775 999
Q ss_pred CEEEEEEcCC
Q 001287 263 SILAVGYIDG 272 (1107)
Q Consensus 263 ~~l~sg~~dG 272 (1107)
+.|+....++
T Consensus 383 ~~l~~~~~~~ 392 (427)
T PRK02889 383 RYILYATQQG 392 (427)
T ss_pred CEEEEEEecC
Confidence 9988877654
No 230
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.7e-07 Score=107.46 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=109.9
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCC------------CEEEEEcCCCcEEEE
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGS------------HFMYIGDENGLMSVI 144 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~------------~~l~~g~~dg~V~vw 144 (1107)
.-.++.|++.| |+..+..+.|.|-|..+-+.+.++ .|+..|+.+.|.|.. -.+++++-.|.|.+|
T Consensus 17 N~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36678889887 777777899999999999999888 466889999997642 367888899999999
Q ss_pred EeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC-CC-CEEEEEECCCeEEEEEccCCEEEEEeCCcccc
Q 001287 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-SG-NRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-~~-~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~ 222 (1107)
|+-.. ..+ ..+..+. +++..++|-|.. +. ..|+.-....++.+|+..+|...+.+.+.
T Consensus 95 d~~~~--s~~---~~l~~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys--- 154 (1062)
T KOG1912|consen 95 DFVLA--SVI---NWLSHSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS--- 154 (1062)
T ss_pred Eehhh--hhh---hhhcCCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC---
Confidence 98642 111 1233332 667777776643 23 45777888899999999999887765431
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
.....|+.+..-|.+++..-+..|.+.+-+.-.
T Consensus 155 --------------------------~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 155 --------------------------HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred --------------------------CcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 223444554434566777777778777766543
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.99 E-value=1.2e-05 Score=91.78 Aligned_cols=149 Identities=16% Similarity=0.254 Sum_probs=94.5
Q ss_pred CcEEEEEc--CCCeee--eeeccCCCeEEEEEecCCCEEEEEcC----CCcEEEEEeecCCCceeecceeeccccccccc
Q 001287 98 NEIQVWSL--ESRSLA--CCLKWESNITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 98 ~~I~vWDl--~s~~~~--~~~~~~~~Vt~l~~~~~~~~l~~g~~----dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
+.|.+|++ +++++. .........+.+++++++++|++..+ .|.|..+.++.+++++... -+++...
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~-~~~~~~g----- 86 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL-NSVPSGG----- 86 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE-EEEEESS-----
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe-eeeccCC-----
Confidence 67888888 555443 33345567788999999999999987 5789999998876777653 1122111
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEE-ECCCeEEEEEccC-CEEEEE---eCCccccccccccCCCCCCCCccccCCCC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSE-AQIIFV---GGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~dg~V~vwdl~~-~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1107)
...+.++.+| ++.+|+++ +.+|.|.++++.. +.+... ..|... + ...
T Consensus 87 -------~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-----------------g--~~~ 138 (345)
T PF10282_consen 87 -------SSPCHIAVDP--DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-----------------G--PNP 138 (345)
T ss_dssp -------SCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-----------------E--SST
T ss_pred -------CCcEEEEEec--CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-----------------C--Ccc
Confidence 5678899977 57767666 4689999999987 444322 212000 0 000
Q ss_pred CCCCCCceeEEEeecCCCCEEEEEEc-CCcEEEEeCCC
Q 001287 245 HQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTST 281 (1107)
Q Consensus 245 ~~~~~~~Vtsl~w~spdg~~l~sg~~-dG~I~lWd~~~ 281 (1107)
..++.....++.|. |+|+++++... ...|.+|++..
T Consensus 139 ~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 139 DRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp TTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-T
T ss_pred cccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeC
Confidence 11224567788864 99998887754 33577776653
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.96 E-value=2.5e-09 Score=115.82 Aligned_cols=195 Identities=14% Similarity=0.220 Sum_probs=156.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeecc
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~ 116 (1107)
+.--+.|+.+|+.|+.|+..|.|-.+|..+....++..-...|..+.|..+. .++++.+.+.+.|||-. |.-++++..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~yvYD~~-GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE-QFFAVAQKKYVYVYDNN-GTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch-HHHHhhhhceEEEecCC-CcEEeehhh
Confidence 3667899999999999999999999999888887777777789999999884 45566678899999954 455666777
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEE
Q 001287 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1107)
Q Consensus 117 ~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~ 196 (1107)
...|..+.|.|...+|++++..|.++-.|+. .|+++.. +..-. +.+..+.-+|. ...+-+|
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS--~GklVa~---~~t~~------------G~~~vm~qNP~--NaVih~G 269 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVS--TGKLVAS---IRTGA------------GRTDVMKQNPY--NAVIHLG 269 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeec--hhhhhHH---HHccC------------CccchhhcCCc--cceEEEc
Confidence 7889999999999999999999977666655 3666643 22211 56777788884 4447789
Q ss_pred ECCCeEEEEEccCCEE-EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEE
Q 001287 197 YENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 275 (1107)
Q Consensus 197 ~~dg~V~vwdl~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~ 275 (1107)
..+|+|.+|....... +.+..| .++|.+++.. ++|.+++|.+.|..++
T Consensus 270 hsnGtVSlWSP~skePLvKiLcH------------------------------~g~V~siAv~-~~G~YMaTtG~Dr~~k 318 (545)
T KOG1272|consen 270 HSNGTVSLWSPNSKEPLVKILCH------------------------------RGPVSSIAVD-RGGRYMATTGLDRKVK 318 (545)
T ss_pred CCCceEEecCCCCcchHHHHHhc------------------------------CCCcceEEEC-CCCcEEeeccccccee
Confidence 9999999999888765 445556 8889999965 9999999999999999
Q ss_pred EEeCCCCC
Q 001287 276 LWNTSTTA 283 (1107)
Q Consensus 276 lWd~~~~~ 283 (1107)
|||+....
T Consensus 319 IWDlR~~~ 326 (545)
T KOG1272|consen 319 IWDLRNFY 326 (545)
T ss_pred Eeeecccc
Confidence 99998664
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.94 E-value=7.7e-07 Score=101.62 Aligned_cols=106 Identities=18% Similarity=0.322 Sum_probs=74.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeccCCCe-EEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccc
Q 001287 90 FLISITNDNEIQVWSLESRSLACCLKWESNI-TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1107)
Q Consensus 90 ~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~V-t~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1107)
++++-..++.|.|.|..+.+.+..+...+.+ ..+.++++++++++.+.||.|.++|+.. +++... +...
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~--~~~v~~---i~~G----- 77 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT--GKVVAT---IKVG----- 77 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS--SSEEEE---EE-S-----
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc--ccEEEE---EecC-----
Confidence 3455567899999999999999988765554 4467899999999999999999888765 445432 3321
Q ss_pred cCCCCCCCCCeEEEEcccCCCCCEEEEE-ECCCeEEEEEccCCEEEEE
Q 001287 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFV 215 (1107)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~dg~V~vwdl~~~~~~~~ 215 (1107)
....+++++| +|++++++ +..+.+.++|.++.+++..
T Consensus 78 --------~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 78 --------GNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp --------SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred --------CCcceEEEcC--CCCEEEEEecCCCceeEeccccccceee
Confidence 3478899977 78877765 5789999999999877654
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.94 E-value=1.1e-07 Score=99.08 Aligned_cols=178 Identities=14% Similarity=0.241 Sum_probs=131.9
Q ss_pred CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC-Ceeeeee---ccCCCeEEEEEecCCCEE
Q 001287 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-RSLACCL---KWESNITAFSVISGSHFM 132 (1107)
Q Consensus 57 g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s-~~~~~~~---~~~~~Vt~l~~~~~~~~l 132 (1107)
..|.|||-.....+.+.....+|+++.+.++. ++.+ -++.|.||.... -+.++.+ .-+....+++-.....+|
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 56999996555666777788999999999882 4444 488999999874 3555544 334445555544444455
Q ss_pred E-EEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCe-EEEEEccCC
Q 001287 133 Y-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL-VILWDVSEA 210 (1107)
Q Consensus 133 ~-~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~-V~vwdl~~~ 210 (1107)
+ =|-.-|.|+|.++...... .|..+++|. ..|.||+.+- +|.++++++..|+ |||||..++
T Consensus 152 afPg~k~GqvQi~dL~~~~~~---~p~~I~AH~------------s~Iacv~Ln~--~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN---APSIINAHD------------SDIACVALNL--QGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC---CceEEEccc------------CceeEEEEcC--CccEEEEeccCcEEEEEEEcCCC
Confidence 4 3456799999998764322 345688887 8899999954 8999999999995 689999998
Q ss_pred EEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 211 QIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 211 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
..+.- +.. .+...|.|++| ||++.+|++.+.-|+|+++.+....
T Consensus 215 ~~l~E~RRG----------------------------~d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 215 TLLQELRRG----------------------------VDRADIYCIAF-SPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEeeeeecC----------------------------CchheEEEEEe-CCCccEEEEEcCCCeEEEEEeecCC
Confidence 76543 221 11668999996 5999999999999999999997653
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.3e-07 Score=111.84 Aligned_cols=175 Identities=14% Similarity=0.070 Sum_probs=119.6
Q ss_pred CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC---CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEE
Q 001287 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1107)
Q Consensus 57 g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~ 133 (1107)
..|.+||.++.....+..|..++...+|+||+.+|+.++.+ ..|.+||+.+++........+...+.+|+|++++|+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 46899999877666667778899999999999999988743 469999999887655445566667889999999776
Q ss_pred E-EcCCCc--EEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CCe--EEEEEc
Q 001287 134 I-GDENGL--MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NAL--VILWDV 207 (1107)
Q Consensus 134 ~-g~~dg~--V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~--V~vwdl 207 (1107)
. .+.+|. |++|+++ .+.+.+ +..+. .......|+| ++++|+.++. +|. |.++|+
T Consensus 264 ~~~s~~g~~~Iy~~d~~--~g~~~~----lt~~~------------~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLG--SRQLTR----LTNHF------------GIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred EEEeCCCCceEEEEECC--CCCeEE----CccCC------------CCccceEECC--CCCEEEEEECCCCCceEEEEEC
Confidence 4 455665 5555544 455443 22222 2345678988 6877776664 444 566677
Q ss_pred cCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC---cEEEEeCCCC
Q 001287 208 SEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 282 (1107)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG---~I~lWd~~~~ 282 (1107)
.+++...+... .......+|. |||++|+..+.++ .|.+||+.++
T Consensus 324 ~~g~~~~lt~~------------------------------g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 324 SGGSAERLTFQ------------------------------GNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCCCeEEeecC------------------------------CCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCC
Confidence 66654433211 1123357774 9999998776543 5899998765
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.92 E-value=8.4e-08 Score=99.36 Aligned_cols=152 Identities=12% Similarity=0.145 Sum_probs=106.9
Q ss_pred EEEEEcCCCCEEEEEEC---C-------CcEEEEeC--CCcce-eeeCCCCCCEEEEEEEeCCCEEEEEe--CCCcEEEE
Q 001287 39 SILAFDHIQRLLAIATL---D-------GRIKVIGG--DGIEG-LLISPSQLPYKNLEFLQNQGFLISIT--NDNEIQVW 103 (1107)
Q Consensus 39 ~~lafsp~~~~LA~Gs~---d-------g~I~iw~~--~~~~~-~~~~~h~~~V~~l~fs~d~~~L~S~s--~d~~I~vW 103 (1107)
..|.|+|+|.+|++=.. | |...||-+ ..... .......++|..++|+|++..++.+. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35889999988877554 1 44555555 22222 23344567899999999998876553 56799999
Q ss_pred EcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC---CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 104 SLESRSLACCLKWESNITAFSVISGSHFMYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 104 Dl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~---dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
|++ .+.+..+. ...+..+.|+|++++|++|+. .|.|.+|+.+. .+.+.. .. | ..++
T Consensus 89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~---~~-~-------------~~~t 147 (194)
T PF08662_consen 89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKIST---FE-H-------------SDAT 147 (194)
T ss_pred cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeec---cc-c-------------CcEE
Confidence 997 44444443 467789999999999998864 47799999873 233211 11 1 4489
Q ss_pred EEEcccCCCCCEEEEEEC------CCeEEEEEccCCEEE
Q 001287 181 GVLPHPNSSGNRVLIAYE------NALVILWDVSEAQII 213 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~------dg~V~vwdl~~~~~~ 213 (1107)
.++|+| +|.+|+++.. |..++||+.....+.
T Consensus 148 ~~~WsP--dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 148 DVEWSP--DGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred EEEEcC--CCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 999999 7998888775 678899999765443
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.92 E-value=2.5e-08 Score=103.29 Aligned_cols=109 Identities=7% Similarity=0.206 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC---CcEEEEEcCCCee
Q 001287 36 ATASILAFDHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSL 110 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs--~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWDl~s~~~ 110 (1107)
+.|.+++|+|++..+|+.. .++.|.||+.....+... +..++..+.|+|+|.+|+.++.+ |.|.+||+++.+.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 4599999999999877654 568999999975444433 35678899999999999998854 5699999999998
Q ss_pred eeeeccCCCeEEEEEecCCCEEEEEcC------CCcEEEEEee
Q 001287 111 ACCLKWESNITAFSVISGSHFMYIGDE------NGLMSVIKYD 147 (1107)
Q Consensus 111 ~~~~~~~~~Vt~l~~~~~~~~l~~g~~------dg~V~vw~~d 147 (1107)
+....+.. ++.++|+|++++++++.. |..++||++.
T Consensus 138 i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 88877665 789999999999998864 6778999987
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=2.9e-06 Score=96.48 Aligned_cols=215 Identities=19% Similarity=0.155 Sum_probs=146.9
Q ss_pred eecCCCCC--eEEEEEcCCCCEEEEEECCCcEEEEeCCCcc------e----------eeeCCCCCCEEEEEEEeCCCEE
Q 001287 30 VHYGIPAT--ASILAFDHIQRLLAIATLDGRIKVIGGDGIE------G----------LLISPSQLPYKNLEFLQNQGFL 91 (1107)
Q Consensus 30 ~~~G~~~~--i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~------~----------~~~~~h~~~V~~l~fs~d~~~L 91 (1107)
...|+|.. ..|++|...+.++|.|+.||.+++..+++.. . ..+-+|++.|.-+.|..+.+.|
T Consensus 7 kki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 7 KKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred cccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 34566655 4689999999999999999999998763321 0 1345799999999999998889
Q ss_pred EEEeCCCcEEEEEcCCCeeeeee---ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccc
Q 001287 92 ISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1107)
Q Consensus 92 ~S~s~d~~I~vWDl~s~~~~~~~---~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1107)
-+...+|-|.||-+-.+.-...+ ...+.|.+++|+.+|..+.+..+||.|.|=.+|. .-+ -+.++..
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG---NRI------wgKeLkg- 156 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG---NRI------WGKELKG- 156 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc---cee------cchhcch-
Confidence 99999999999999888654443 3456789999999999999999999887766663 211 1111100
Q ss_pred cCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCC
Q 001287 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1107)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1107)
.-...+.|+| +..+++.+-.+|.+.++|-...-..... ..+.+. -.+..+. .
T Consensus 157 --------~~l~hv~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~------~~c~Vn--~tg~~s~----------~ 208 (1189)
T KOG2041|consen 157 --------QLLAHVLWSE--DLEQALFKKANGETHLYDNQGNFERKLE------KDCEVN--GTGIFSN----------F 208 (1189)
T ss_pred --------heccceeecc--cHHHHHhhhcCCcEEEecccccHHHhhh------hceEEe--eeeeecC----------C
Confidence 2255788977 5666888888999999997664211100 000000 0000000 0
Q ss_pred CCceeEEEee-------cCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 249 EKEISALCWA-------SSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 249 ~~~Vtsl~w~-------spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...|..++|+ .||...|++++.+|.+.+-.-.+.
T Consensus 209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 3346677776 357788999999999887655443
No 239
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.91 E-value=7.3e-07 Score=98.42 Aligned_cols=161 Identities=11% Similarity=0.170 Sum_probs=109.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC---------------
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN--------------- 98 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~--------------- 98 (1107)
..-.+....|||.|.+|+.....| |.+|+......+....|.. |..+.|||++.||++=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~-V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPD-VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeecCC-ceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 445677899999999999988755 8999997776766677754 99999999999999876543
Q ss_pred cEEEEEcCCCeeeeeeccCC-C--eE-EEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCC
Q 001287 99 EIQVWSLESRSLACCLKWES-N--IT-AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 99 ~I~vWDl~s~~~~~~~~~~~-~--Vt-~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1107)
.+.|||+.++.++.++.... + .. -+.|+-+..++|-- ...+++|+++. ..+.+.|+..-
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t---~n~~~~p~~~l------------- 171 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT---DNIEEHPFKNL------------- 171 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC---CccccCchhhc-------------
Confidence 49999999999988773321 2 33 56677777766533 23456777752 23333222111
Q ss_pred CCCCeEEEEcccCCCCCEEEE-----EECCCeEEEEEccCCEEE
Q 001287 175 SHQPVVGVLPHPNSSGNRVLI-----AYENALVILWDVSEAQII 213 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~-----~~~dg~V~vwdl~~~~~~ 213 (1107)
....|...+++|..++..|+. ....+.+++|.+..++++
T Consensus 172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 125688888888655553332 234668888887766554
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=7.5e-06 Score=93.30 Aligned_cols=123 Identities=15% Similarity=0.273 Sum_probs=89.3
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecc----------eeecccccccccCCCCCCCCCeEEEEccc
Q 001287 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP----------YNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 117 ~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~----------~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
.....|++|+....|+++|+.||.++|.++++++..+...+ .++.+ |...|.-+.|+-
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG------------H~~sV~vvTWNe 81 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG------------HNASVMVVTWNE 81 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc------------CcceEEEEEecc
Confidence 34678999999999999999999999999987543333211 12233 348899999954
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEE
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~ 266 (1107)
..+.|-+...+|.|.||-+-.+.-..-.-. .-...-|.+++|. .||..|.
T Consensus 82 --~~QKLTtSDt~GlIiVWmlykgsW~EEMiN---------------------------nRnKSvV~SmsWn-~dG~kIc 131 (1189)
T KOG2041|consen 82 --NNQKLTTSDTSGLIIVWMLYKGSWCEEMIN---------------------------NRNKSVVVSMSWN-LDGTKIC 131 (1189)
T ss_pred --ccccccccCCCceEEEEeeecccHHHHHhh---------------------------CcCccEEEEEEEc-CCCcEEE
Confidence 555588889999999998766543211000 0005568899998 8999999
Q ss_pred EEEcCCcEEEEeCCC
Q 001287 267 VGYIDGDILLWNTST 281 (1107)
Q Consensus 267 sg~~dG~I~lWd~~~ 281 (1107)
..+.||.|.+=.+..
T Consensus 132 IvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 132 IVYEDGAVIVGSVDG 146 (1189)
T ss_pred EEEccCCEEEEeecc
Confidence 999999998866653
No 241
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.90 E-value=1.3e-05 Score=101.62 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=96.2
Q ss_pred ccCCCCcEEEEEec---C---CcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEecc---CceE
Q 001287 490 KCHSVDRVYLAGYH---D---GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE---FGLV 560 (1107)
Q Consensus 490 ~~s~~~~~laTgs~---D---gtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~---dg~V 560 (1107)
.+..||+++|+.+- + +.||||+-. +.+.... ..-.+-=.+|+|.|.|+++|+.-. .-.|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-----------E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-----------EPVDGLEGALSWRPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-----------ccCCCccCCccCCCCCCEEEEEEEcCCCcEE
Confidence 56678888887754 3 469999987 4444111 011112347899999999998765 3455
Q ss_pred EEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 001287 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFF 640 (1107)
Q Consensus 561 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~ 640 (1107)
.+|.-+.-.+. + ....+......|..|+|++|+..||+-..|. |.+|-..+...-++
T Consensus 284 vFfErNGLrhg-------------------e---F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 284 VFFERNGLRHG-------------------E---FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred EEEecCCcEee-------------------e---EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence 56654443211 0 1111223456799999999999999988777 99999988765433
Q ss_pred eecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 641 TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 641 ~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
-.........+..+.|++- ....|.+++.+|.+..++.
T Consensus 341 qei~~~~~~~~~~~~Wdpe---------------------~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPE---------------------KPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEccCCCCCCceEECCC---------------------CCCEEEEEecCCcEEEEEE
Confidence 2222223344555778732 1345777777777766653
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=6.8e-08 Score=101.84 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=137.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee---
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA--- 111 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~--- 111 (1107)
..+.-+||++----+|+++.|-.|+||+....+ ..+.+..+..|++|+|-|.+.--++++-..-|.+|........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 345568888876778999999999999985543 3455666779999999997655555555666999987543221
Q ss_pred ---------eeeccC--CCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 112 ---------CCLKWE--SNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 112 ---------~~~~~~--~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
..++++ ..|+++.+.+++..+++++ .+.+|.||+.+...+... .+ ...+.+
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL-----~~------------~glgg~ 241 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL-----IP------------KGLGGF 241 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc-----cc------------cCCCce
Confidence 112233 4899999999999998887 567899999886433222 11 112678
Q ss_pred EEEEcccCCCCCEEEEEECCCeEEEEEccCCEE--EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEe
Q 001287 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w 257 (1107)
.-+.|+| ++..|+++.-|+..++|+...... .+..+ .+.|+..||
T Consensus 242 slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lg-------------------------------sgrvqtacW 288 (445)
T KOG2139|consen 242 SLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILG-------------------------------SGRVQTACW 288 (445)
T ss_pred eeEEEcC--CCCEEEEecccceeeeehhcccceecceecc-------------------------------CCceeeeee
Confidence 9999999 788899999999999997655322 22221 568999999
Q ss_pred ecCCCCEEEEEEcCCcEEEEeCC
Q 001287 258 ASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 258 ~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
. |+|++|+-.+. |.=++|.+.
T Consensus 289 s-pcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 289 S-PCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred c-CCCCEEEEEEc-CCceEEEEe
Confidence 6 99998876654 444555553
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=8.2e-06 Score=97.76 Aligned_cols=149 Identities=11% Similarity=0.120 Sum_probs=122.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee--eeccC
Q 001287 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC--CLKWE 117 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~--~~~~~ 117 (1107)
+-++++.-++|.|+.-|.|.+|.......- .+.+|++.|-.+.|+-||++++|+|.|.++++|++++++... .+.|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 456788889999999999999998533332 588999999999999999999999999999999999997764 56899
Q ss_pred CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE
Q 001287 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1107)
Q Consensus 118 ~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~ 197 (1107)
.+|..+.|.+. +++++++|-+.++|..+. +... .+..|.. ..+..++.++ ....++++.
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~~---~~l~---~y~~h~g-----------~~iw~~~~~~--~~~~~vT~g 277 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVNG---TQLE---VYDEHSG-----------KGIWKIAVPI--GVIIKVTGG 277 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEeccc---ceeh---hhhhhhh-----------cceeEEEEcC--CceEEEeec
Confidence 99999999988 999999999999997663 3222 2444431 5688888866 455688999
Q ss_pred CCCeEEEEEccCC
Q 001287 198 ENALVILWDVSEA 210 (1107)
Q Consensus 198 ~dg~V~vwdl~~~ 210 (1107)
.||.+++||+...
T Consensus 278 ~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 278 NDSTLKLWDLNGR 290 (967)
T ss_pred cCcchhhhhhhcc
Confidence 9999999998653
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.88 E-value=4.6e-07 Score=107.09 Aligned_cols=177 Identities=14% Similarity=0.140 Sum_probs=120.9
Q ss_pred CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC---CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEE
Q 001287 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1107)
Q Consensus 57 g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~ 133 (1107)
..|.+++.++.....+..+...+....|+||+.+|+.++.+ ..|.+||+.+++......+.+.+.+++|+|+++.|+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 35888888766555566677789999999999999988754 479999999987655555667778899999998776
Q ss_pred E-EcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECC-C--eEEEEEccC
Q 001287 134 I-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSE 209 (1107)
Q Consensus 134 ~-g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d-g--~V~vwdl~~ 209 (1107)
. .+.++...||.++..++...+ +..+. .......|+| ++++|+..+.. + .|.++|+.+
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~~~----l~~~~------------~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQLTR----LTNGP------------GIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred EEECCCCCccEEEEECCCCCEEE----CCCCC------------CCCCCEEECC--CCCEEEEEECCCCCceEEEEECCC
Confidence 4 455565444544444444433 22221 2234567877 67777766543 3 577778777
Q ss_pred CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCC---cEEEEeCCCC
Q 001287 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 282 (1107)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG---~I~lWd~~~~ 282 (1107)
++...+..+ ...+....|. |+|++|+.+..++ .|.+||+.++
T Consensus 312 ~~~~~l~~~------------------------------~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 312 GEVRRLTFR------------------------------GGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCEEEeecC------------------------------CCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCC
Confidence 665443322 2334567775 9999999888776 7888888653
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=5.2e-08 Score=108.31 Aligned_cols=201 Identities=11% Similarity=0.196 Sum_probs=149.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCC-CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h-~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~ 112 (1107)
+|.--..|+|+.-..=|.+|+....|+-++++....+.-..- .+++.++..++-.++|++++.+|.|.+||-..+..+.
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 455555677774444344444456688888877666543333 3789999999987888888889999999999987766
Q ss_pred eec-------cCC-----CeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 113 CLK-------WES-----NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 113 ~~~-------~~~-----~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
++. +++ .|+++.|+.++=.+++|..+|.|.|+|+.+.. |+-+..|.. .-+|.
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~------pl~~kdh~~----------e~pi~ 275 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK------PLLVKDHGY----------ELPIK 275 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC------ceeecccCC----------cccee
Confidence 652 333 49999999999999999999999999987643 233444431 15699
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
.+.|.+.++++ .++......++|||-.+++....... ...+.-+|++ |
T Consensus 276 ~l~~~~~~~q~-~v~S~Dk~~~kiWd~~~Gk~~asiEp------------------------------t~~lND~C~~-p 323 (703)
T KOG2321|consen 276 KLDWQDTDQQN-KVVSMDKRILKIWDECTGKPMASIEP------------------------------TSDLNDFCFV-P 323 (703)
T ss_pred eecccccCCCc-eEEecchHHhhhcccccCCceeeccc------------------------------cCCcCceeee-c
Confidence 99999885555 45556667889999999887655443 4458889988 8
Q ss_pred CCCEEEEEEcCCcEEEEeCCCC
Q 001287 261 SGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 261 dg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
++.+++++-.++.+..|-+...
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEEecCCCcceeEEcccc
Confidence 9999999999998888887654
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.88 E-value=1.6e-07 Score=110.85 Aligned_cols=189 Identities=13% Similarity=0.059 Sum_probs=129.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEE-eCC--CcEEEEEcCC
Q 001287 34 IPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TND--NEIQVWSLES 107 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~d---g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~-s~d--~~I~vWDl~s 107 (1107)
....+...+|+|++++||.++.+ ..|++|++.+.....+..+.+.+.+++|+||+..|+.. +.+ ..|.+||+.+
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 34457788999999999998755 47999999776555555666778889999999877644 434 3599999998
Q ss_pred CeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
+.......+........|++++++|+..+ ..|...||.++...+...+ +..+. ..+..+.|+|
T Consensus 268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~----l~~~~------------~~~~~~~~sp 331 (417)
T TIGR02800 268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR----LTFRG------------GYNASPSWSP 331 (417)
T ss_pred CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCC------------CCccCeEECC
Confidence 86655545555556778999999887554 4555455666554444432 22111 3466778988
Q ss_pred CCCCCEEEEEECCC---eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC
Q 001287 187 NSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg---~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~ 263 (1107)
++++++.+..++ .|.+||+.++....+... .......| +|||+
T Consensus 332 --dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-------------------------------~~~~~p~~-spdg~ 377 (417)
T TIGR02800 332 --DGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-------------------------------GLDESPSF-APNGR 377 (417)
T ss_pred --CCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-------------------------------CCCCCceE-CCCCC
Confidence 677788887776 788899887654333211 11223456 49999
Q ss_pred EEEEEEcCC
Q 001287 264 ILAVGYIDG 272 (1107)
Q Consensus 264 ~l~sg~~dG 272 (1107)
+|+..+.++
T Consensus 378 ~l~~~~~~~ 386 (417)
T TIGR02800 378 MILYATTRG 386 (417)
T ss_pred EEEEEEeCC
Confidence 988887765
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=4.9e-08 Score=104.24 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=132.0
Q ss_pred CCCCcEEEEEecC--CcEEEEeCCCCceeEEEeeccceeeeeecCCC--CCeEEEEEEeC--CCeEEEeccCceEEEEEe
Q 001287 492 HSVDRVYLAGYHD--GSVRIWDATYPVFKLICALDAEVQGIEVAGSR--APVSTLSFCFI--NSSLAVGNEFGLVYIYNL 565 (1107)
Q Consensus 492 s~~~~~laTgs~D--gtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~--~~Vt~l~fspd--~~~Lasg~~dg~V~vw~~ 565 (1107)
..+..++++|+.. ..++|||+... .+++..+....+ .-+-. ..++.+.|-+. ...||++...+.|++|+.
T Consensus 158 ~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD--~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt 233 (412)
T KOG3881|consen 158 DTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPND--RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDT 233 (412)
T ss_pred CCCCceEecCchhcccceeeeecccc--eeeeeccCCCCc--cccceeeeeeccceecCCCCCceEEEEecceeEEEecC
Confidence 3455688889998 78999999877 344544321111 11111 24678899988 889999999999999999
Q ss_pred cCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCC
Q 001287 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1107)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~ 645 (1107)
..... ++..|.....+|+++..-|+++++.+|..-|.+..+|++++.++ ...+.
T Consensus 234 ~~qRR------------------------PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~k 287 (412)
T KOG3881|consen 234 RHQRR------------------------PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLK 287 (412)
T ss_pred cccCc------------------------ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccC
Confidence 86533 67777888999999999999999999999999999999999887 23367
Q ss_pred CCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
+..+.|.++.-. |...+|++++-|.-|+|+|..+..+|...
T Consensus 288 g~tGsirsih~h----------------------p~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 288 GITGSIRSIHCH----------------------PTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred CccCCcceEEEc----------------------CCCceEEeeccceeEEEeecccchhhhhh
Confidence 889999999877 55789999999999999999998887665
No 248
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.85 E-value=2.9e-09 Score=115.31 Aligned_cols=163 Identities=16% Similarity=0.242 Sum_probs=136.5
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
+.+..-+..+|..+.|=.+.+++|++- ...++|||..+.+...+..| .+|..|.|.|..-+|++++..|.++.-|+.+
T Consensus 163 L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~ 240 (545)
T KOG1272|consen 163 LHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVST 240 (545)
T ss_pred eeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeech
Confidence 334445566677777878888999996 47899999999999888776 5699999999988889999999999999999
Q ss_pred Ceeeeeec-cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
|+++..+. -.+.+..++-+|.+-.+-+|..+|+|.+|.-... .-|. ++-.|. ++|.+|+++|
T Consensus 241 GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-ePLv----KiLcH~------------g~V~siAv~~ 303 (545)
T KOG1272|consen 241 GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-EPLV----KILCHR------------GPVSSIAVDR 303 (545)
T ss_pred hhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-chHH----HHHhcC------------CCcceEEECC
Confidence 99998884 4578899999999999999999999999986542 1222 255555 8999999987
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCE
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
.|.++++++.|..|+|||++...
T Consensus 304 --~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 304 --GGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred --CCcEEeecccccceeEeeecccc
Confidence 79999999999999999998865
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.82 E-value=1.2e-07 Score=99.66 Aligned_cols=205 Identities=17% Similarity=0.247 Sum_probs=159.9
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--Ccc---eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEE
Q 001287 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD--GIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1107)
Q Consensus 28 ~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~--~~~---~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1107)
...++-.|..++++.|.++.+.|.+|-..|.+.-+... ... ...-..|.++|..+-|+-....+++.+.|..+.-
T Consensus 61 psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~ 140 (404)
T KOG1409|consen 61 PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAW 140 (404)
T ss_pred chhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEE
Confidence 44556789999999999999999999999999988762 222 2244569999999999988889999999988766
Q ss_pred EEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 103 WDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
--.+++..+..+.....-+++.++-. +.++|...|.|....+....-.+. +++.+|. +.++++
T Consensus 141 hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i---~~~~~h~------------~~~~~l 203 (404)
T KOG1409|consen 141 HCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLI---TTFNGHT------------GEVTCL 203 (404)
T ss_pred EeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceE---EEEcCcc------------cceEEE
Confidence 56677776666655544445544433 788999999999988886544444 5677777 899999
Q ss_pred EcccCCCCCEEEEEECCCeEEEEEccCCEE--EEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecC
Q 001287 183 LPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1107)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~sp 260 (1107)
.|.| ...+|++++.|-.+.+||+-..+. ...++| ...|..+++. +
T Consensus 204 ~Wd~--~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh------------------------------~~kV~~l~~~-~ 250 (404)
T KOG1409|consen 204 KWDP--GQRLLFSGASDHSVIMWDIGGRKGTAYELQGH------------------------------NDKVQALSYA-Q 250 (404)
T ss_pred EEcC--CCcEEEeccccCceEEEeccCCcceeeeeccc------------------------------hhhhhhhhhh-h
Confidence 9977 455699999999999999877654 445666 6677778866 6
Q ss_pred CCCEEEEEEcCCcEEEEeCCCC
Q 001287 261 SGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 261 dg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
--+.+.+++.||.|.+|+++..
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hheeeeeccCCCeEEEEeccce
Confidence 6788999999999999999743
No 250
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=5.6e-08 Score=107.28 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=125.0
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee--ccCCCeEEEEEecCC--CEEEEEcCCCcEEEEEe
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGS--HFMYIGDENGLMSVIKY 146 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~--~~~~~Vt~l~~~~~~--~~l~~g~~dg~V~vw~~ 146 (1107)
.+.+|++.|.+|+|+.||.+|+|+|.|-.|.|||.-..++++++ +|...|.++.|-|.. ..+++|..|..|+++++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 46789999999999999999999999999999999999999888 788999999999864 58889999999999999
Q ss_pred ecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe--CCcccccc
Q 001287 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLK 224 (1107)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~--g~~~~~~~ 224 (1107)
+...+.-. .|...+....-.-+...|..|+..|. ....+.+++.||+++-+|+++...-..- .+.....
T Consensus 125 ~~~~~~~~-------d~~~~~~~~~~~cht~rVKria~~p~-~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n- 195 (758)
T KOG1310|consen 125 DSSKEGGM-------DHGMEETTRCWSCHTDRVKRIATAPN-GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN- 195 (758)
T ss_pred cccccccc-------ccCccchhhhhhhhhhhhhheecCCC-CCceEEEecCCcceeeecccCCccCCccccccHHHHH-
Confidence 85221110 01000000011112266778888775 3356999999999999999874221000 0000000
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.- ...-...|+.-...+..+|++|+.|--.++||..
T Consensus 196 -------------y~-------~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 196 -------------YN-------PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred -------------hc-------hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 00 0012344555443455789999999999999953
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=5.1e-07 Score=106.65 Aligned_cols=161 Identities=15% Similarity=0.133 Sum_probs=107.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEE-eCCCc--EEEEEcCCC
Q 001287 35 PATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TNDNE--IQVWSLESR 108 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~d---g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~-s~d~~--I~vWDl~s~ 108 (1107)
+..+...+|+|||+.||..+.+ ..|++|++.+.+...+....+......|+|||.+|+.. +.++. |.+||+.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 4456788999999999987643 35888898765554444334455678999999988754 44554 888899988
Q ss_pred eeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC
Q 001287 109 SLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1107)
Q Consensus 109 ~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~ 187 (1107)
+......+.......+|+|++++|+..+ .+|...||.++..+++..+. ...+ .......|+|
T Consensus 297 ~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L--t~~g--------------~~~~~~~~Sp- 359 (448)
T PRK04792 297 ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL--TFEG--------------EQNLGGSITP- 359 (448)
T ss_pred CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE--ecCC--------------CCCcCeeECC-
Confidence 7655445555677889999999876554 46677778777665655432 1111 1233457877
Q ss_pred CCCCEEEEEEC-CC--eEEEEEccCCEEE
Q 001287 188 SSGNRVLIAYE-NA--LVILWDVSEAQII 213 (1107)
Q Consensus 188 ~~~~~ll~~~~-dg--~V~vwdl~~~~~~ 213 (1107)
+|+.|+.... ++ .|.++|+.++...
T Consensus 360 -DG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 360 -DGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred -CCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 6776666544 44 4555677776654
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=8e-07 Score=105.29 Aligned_cols=163 Identities=14% Similarity=0.081 Sum_probs=110.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEE-EeCCC--cEEEEEcCC
Q 001287 34 IPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLIS-ITNDN--EIQVWSLES 107 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~d---g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S-~s~d~--~I~vWDl~s 107 (1107)
....+...+|+|||+.||..+.+ ..|++|++.+.+...+....+.+....|+|||.+|+. .+.++ .|.+||+.+
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 34567888999999999887644 4689999976665555555556678999999988874 44444 588999999
Q ss_pred CeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 108 RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
+.......+....+...|+|+++.++..+ .+|...||.++..++...+. ...+ .......|+|
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l--t~~~--------------~~~~~~~~Sp 340 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV--TFVG--------------NYNARPRLSA 340 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe--ecCC--------------CCccceEECC
Confidence 87655445555677789999998776554 55665666666555555432 1111 1123457877
Q ss_pred CCCCCEEEEEECC-C--eEEEEEccCCEEEE
Q 001287 187 NSSGNRVLIAYEN-A--LVILWDVSEAQIIF 214 (1107)
Q Consensus 187 ~~~~~~ll~~~~d-g--~V~vwdl~~~~~~~ 214 (1107)
+++.++....+ + .|.+||+.++....
T Consensus 341 --dg~~i~~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 341 --DGKTLVMVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred --CCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence 67767666543 3 57788988876543
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.6e-05 Score=89.26 Aligned_cols=144 Identities=11% Similarity=0.175 Sum_probs=85.4
Q ss_pred EEEEEECCCcEEEEeCCC-cceeeeCCC---CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEE
Q 001287 49 LLAIATLDGRIKVIGGDG-IEGLLISPS---QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFS 124 (1107)
Q Consensus 49 ~LA~Gs~dg~I~iw~~~~-~~~~~~~~h---~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~ 124 (1107)
.+|+=+. -.+.+|.... .......++ ..++...++|++ ++|+..+.+..+.|.++.+...+.+.... .+.++.
T Consensus 4 ~~aVRsS-e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~-G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~ 80 (566)
T KOG2315|consen 4 VYAVRSS-EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNN-GRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLL 80 (566)
T ss_pred eEEEEcc-ceeEEeccCCccccccccccCCCCCcceeEEEcCC-CcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeee
Confidence 3444443 3388888754 333334444 345677778887 56777777899999999999644444444 899999
Q ss_pred EecCCCEEEEE-------cC---CCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 125 VISGSHFMYIG-------DE---NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 125 ~~~~~~~l~~g-------~~---dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
|+|.+.+|.+= .. .-.+.+|+..+ +... +.+.... ..++ +..|++ +.. ++
T Consensus 81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~---s~~q~k~----------Q~~W--~~qfs~--dEs-l~ 140 (566)
T KOG2315|consen 81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GVQR---SQIQKKM----------QNGW--VPQFSI--DES-LA 140 (566)
T ss_pred ecccccccccccccccccCCCCCCCceeeeeecc--ceeh---hheehhh----------hcCc--cccccc--chh-hh
Confidence 99999988542 11 22455777664 2221 1121100 0123 667755 333 44
Q ss_pred EEECCCeEEEEEccCCEEEEE
Q 001287 195 IAYENALVILWDVSEAQIIFV 215 (1107)
Q Consensus 195 ~~~~dg~V~vwdl~~~~~~~~ 215 (1107)
+--..+.|.+|++.+.+.+..
T Consensus 141 arlv~nev~f~~~~~f~~~~~ 161 (566)
T KOG2315|consen 141 ARLVSNEVQFYDLGSFKTIQH 161 (566)
T ss_pred hhhhcceEEEEecCCccceee
Confidence 444566788999888655443
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=3.5e-07 Score=97.84 Aligned_cols=186 Identities=13% Similarity=0.181 Sum_probs=139.0
Q ss_pred CCEEEEEECCCcEEEEeCC-----CcceeeeCCCCCCEEEEEEEeCCCEE-EEEeCC--CcEEEEEcCCCeeeeeec---
Q 001287 47 QRLLAIATLDGRIKVIGGD-----GIEGLLISPSQLPYKNLEFLQNQGFL-ISITND--NEIQVWSLESRSLACCLK--- 115 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~-----~~~~~~~~~h~~~V~~l~fs~d~~~L-~S~s~d--~~I~vWDl~s~~~~~~~~--- 115 (1107)
...|.+|..+|.+.+|... ....+.+..| .++..|.-++...++ ++++.. +.+++||++..+.+.+..
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 4577888999999999875 2333333333 557777776654555 557778 889999999986654442
Q ss_pred -------cCCCeEEEEEecC--CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEccc
Q 001287 116 -------WESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1107)
Q Consensus 116 -------~~~~Vt~l~~~~~--~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P 186 (1107)
.+-.++.+.|.+. ...+++++..+.|++||...++.-+.+ +.+. + .+++++..-|
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~--fd~~--E------------~~is~~~l~p 257 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ--FDFL--E------------NPISSTGLTP 257 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE--eccc--c------------CcceeeeecC
Confidence 1225778889888 789999999999999887755443332 2222 2 6689998877
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCEEEEE-e-CCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCE
Q 001287 187 NSSGNRVLIAYENALVILWDVSEAQIIFV-G-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~ 264 (1107)
.++.+++|...|.+..||+++++..-. + |. .+.|+++..+ |.+.+
T Consensus 258 --~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~------------------------------tGsirsih~h-p~~~~ 304 (412)
T KOG3881|consen 258 --SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI------------------------------TGSIRSIHCH-PTHPV 304 (412)
T ss_pred --CCcEEEEecccchhheecccCceeeccccCCc------------------------------cCCcceEEEc-CCCce
Confidence 688899999999999999999987543 2 22 6678888865 88899
Q ss_pred EEEEEcCCcEEEEeCCCC
Q 001287 265 LAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 265 l~sg~~dG~I~lWd~~~~ 282 (1107)
+++++-|..++|+|+.+.
T Consensus 305 las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 305 LASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EEeeccceeEEEeecccc
Confidence 999999999999999874
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=2.1e-06 Score=101.68 Aligned_cols=176 Identities=11% Similarity=0.045 Sum_probs=117.9
Q ss_pred cEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC---CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEE-
Q 001287 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY- 133 (1107)
Q Consensus 58 ~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~- 133 (1107)
+|.++|.++.....+..+..++....|+|||.+|+.++.+ ..|.+||+.+++........+.+.+.+|+|++++|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 4788888877666666778899999999999999887754 369999999987655445556667899999999887
Q ss_pred EEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CC--eEEEEEccCC
Q 001287 134 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 210 (1107)
Q Consensus 134 ~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg--~V~vwdl~~~ 210 (1107)
+...+|...||.++..++...+ +..+. .......|+| +++.++..+. +| .|.++|+.++
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~~----lt~~~------------~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLSR----VTNHP------------AIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred EEccCCCceEEEEECCCCCeEE----cccCC------------CCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 4555665555655555555443 22222 2345567887 6776766554 33 5677787777
Q ss_pred EEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC-C--cEEEEeCCCC
Q 001287 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-G--DILLWNTSTT 282 (1107)
Q Consensus 211 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d-G--~I~lWd~~~~ 282 (1107)
+...+... ........| +|||+.|+....+ | .|.+||+.++
T Consensus 322 ~~~~lt~~------------------------------~~~~~~~~~-Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 322 RAERVTFV------------------------------GNYNARPRL-SADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CEEEeecC------------------------------CCCccceEE-CCCCCEEEEEEccCCceEEEEEECCCC
Confidence 65433211 111223566 4999999877653 3 4778888765
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=1.3e-06 Score=102.35 Aligned_cols=197 Identities=13% Similarity=0.050 Sum_probs=125.2
Q ss_pred CeEEEEEcCCCCEEE---EEECC--CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC-CC----cEEEEEcC
Q 001287 37 TASILAFDHIQRLLA---IATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DN----EIQVWSLE 106 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA---~Gs~d--g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~----~I~vWDl~ 106 (1107)
.+..-+|+|||+.++ +...+ ..|++.++++.+...+....+.....+|||||.+|+..+. ++ .+.+||+.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 345679999997533 44444 4577778876665555555666677899999999887764 22 34557876
Q ss_pred CC---eeeeeecc-CCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecC--CCceeecceeecccccccccCCCCCCCCCe
Q 001287 107 SR---SLACCLKW-ESNITAFSVISGSHFMYIGD-ENGLMSVIKYDAD--EGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 107 s~---~~~~~~~~-~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~--~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
.+ ........ .+.....+|+|++++|+..+ .+|...+|.++.+ .+... .+.... ..+
T Consensus 266 ~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~----~lt~~~------------~~~ 329 (428)
T PRK01029 266 TGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR----LLTKKY------------RNS 329 (428)
T ss_pred cCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE----EeccCC------------CCc
Confidence 53 22222222 23456789999999777554 5676677766542 22222 132221 346
Q ss_pred EEEEcccCCCCCEEEEEECC---CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 180 VGVLPHPNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~d---g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
....|+| +|++|+....+ ..|.+||+.+++...+... ...+.+..
T Consensus 330 ~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~------------------------------~~~~~~p~ 377 (428)
T PRK01029 330 SCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS------------------------------PENKESPS 377 (428)
T ss_pred cceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC------------------------------CCCccceE
Confidence 6788988 68877766543 3688999998876544321 22345678
Q ss_pred eecCCCCEEEEEEc---CCcEEEEeCCCC
Q 001287 257 WASSSGSILAVGYI---DGDILLWNTSTT 282 (1107)
Q Consensus 257 w~spdg~~l~sg~~---dG~I~lWd~~~~ 282 (1107)
|. |||+.|+.... .+.|.+||+.++
T Consensus 378 wS-pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 378 WA-IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EC-CCCCEEEEEECCCCCceEEEEECCCC
Confidence 85 99998875443 346788887654
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.71 E-value=3.3e-05 Score=89.86 Aligned_cols=213 Identities=11% Similarity=0.134 Sum_probs=121.4
Q ss_pred ceeeeecCCCCCeE------EEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCc
Q 001287 26 LRIAVHYGIPATAS------ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1107)
Q Consensus 26 ~~~~~~~G~~~~i~------~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~ 99 (1107)
+++..++-+...+. ..++ .+..+.+++.+|.|+.+|....+.+-...-...+.. ....++..++.++.++.
T Consensus 40 ~~~~W~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~~~~v~v~~~~g~ 116 (377)
T TIGR03300 40 VDQVWSASVGDGVGHYYLRLQPAV--AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGADGGLVFVGTEKGE 116 (377)
T ss_pred ceeeeEEEcCCCcCccccccceEE--ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEcCCEEEEEcCCCE
Confidence 44555554444431 2223 367888999999999999765555432222222211 11234678888889999
Q ss_pred EEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 100 IQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 100 I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
|..||..+++++......+.+.+.-.. .+..+++++.+|.++.|+.. +|+.. +++.... ..
T Consensus 117 l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~--tG~~~---W~~~~~~-------------~~ 177 (377)
T TIGR03300 117 VIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAA--TGERL---WTYSRVT-------------PA 177 (377)
T ss_pred EEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcC--CCcee---eEEccCC-------------Cc
Confidence 999999999998777655544432222 35678888889987666654 45554 2232111 00
Q ss_pred EEEE--cccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCce-eEEE
Q 001287 180 VGVL--PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI-SALC 256 (1107)
Q Consensus 180 ~~v~--f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-tsl~ 256 (1107)
..+. -+|...+..++.+..+|.+..+|..+++.++...... +.+.. ... ....+ .+..
T Consensus 178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~----------~~g~~-~~~--------~~~~~~~~p~ 238 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL----------PKGRT-ELE--------RLVDVDGDPV 238 (377)
T ss_pred eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecccc----------CCCCC-chh--------hhhccCCccE
Confidence 0000 1111122357888889999999999998776432100 00000 000 00001 0111
Q ss_pred eecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 257 WASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 257 w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
. .+..+++++.+|.+..||..++
T Consensus 239 -~--~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 239 -V--DGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred -E--ECCEEEEEEcCCEEEEEECCCC
Confidence 1 2457888888999999999765
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=6.3e-06 Score=91.79 Aligned_cols=104 Identities=13% Similarity=0.257 Sum_probs=81.8
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC-----------CcEEEEEcCC
Q 001287 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND-----------NEIQVWSLES 107 (1107)
Q Consensus 39 ~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-----------~~I~vWDl~s 107 (1107)
+-+.|||.|.||++=-.-| |.+|+...-..+-...|++ |..+.|||+..||++-+.. ..|+|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 4688999999999987655 8999998777776777865 9999999999999998852 4599999999
Q ss_pred Ceeeeeecc--C--CCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 001287 108 RSLACCLKW--E--SNITAFSVISGSHFMYIGDENGLMSVIK 145 (1107)
Q Consensus 108 ~~~~~~~~~--~--~~Vt~l~~~~~~~~l~~g~~dg~V~vw~ 145 (1107)
|.+..++.. . ..-.-+.|+.+++|+|.-..++ |.|+.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyE 332 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYE 332 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEe
Confidence 988777643 1 1223478999999999776654 56655
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.67 E-value=4.1e-05 Score=87.51 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=135.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEeCCCc--c--eeeeCC-CCCCEEEEEEEeCCCEEEEEeC-CCcEEE
Q 001287 33 GIPATASILAFDHIQRLLAIATL----DGRIKVIGGDGI--E--GLLISP-SQLPYKNLEFLQNQGFLISITN-DNEIQV 102 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~----dg~I~iw~~~~~--~--~~~~~~-h~~~V~~l~fs~d~~~L~S~s~-d~~I~v 102 (1107)
.....++-|+++|++++|.+... +|.|..|.++.. . .+.... ....-..+++++++.+|+.+.. ++.|.+
T Consensus 34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 34556778999999999999887 478999988543 2 222222 3345678999999999999985 899999
Q ss_pred EEcCC-Ceeeee---ec-----------cCCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeecc-eeeccccc
Q 001287 103 WSLES-RSLACC---LK-----------WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLP-YNISADAL 165 (1107)
Q Consensus 103 WDl~s-~~~~~~---~~-----------~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~~-~~i~~~~~ 165 (1107)
+++.. +.+... .. ......++.++|+++++++.+. ...|++++++...+++.... +.++.
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--- 190 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--- 190 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST---
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc---
Confidence 99987 443322 21 1246789999999999988763 45678888877665565310 11221
Q ss_pred ccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CCeEEEEEcc--CCEEEEEeCCccccccccccCCCCCCCCccccCC
Q 001287 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1107)
Q Consensus 166 ~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg~V~vwdl~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1107)
......+.|+| +++++.+..+ ++.|.+|++. .+........ . ..+....+
T Consensus 191 ----------G~GPRh~~f~p--dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~---------~---~~~~~~~~--- 243 (345)
T PF10282_consen 191 ----------GSGPRHLAFSP--DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI---------S---TLPEGFTG--- 243 (345)
T ss_dssp ----------TSSEEEEEE-T--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE---------E---SCETTSCS---
T ss_pred ----------CCCCcEEEEcC--CcCEEEEecCCCCcEEEEeecccCCceeEEEEe---------e---eccccccc---
Confidence 15689999999 6777766554 6789999988 4544322211 0 00000000
Q ss_pred CCCCCCCCceeEEEeecCCCCEEEEEEc-CCcEEEEeCC
Q 001287 243 SEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTS 280 (1107)
Q Consensus 243 ~~~~~~~~~Vtsl~w~spdg~~l~sg~~-dG~I~lWd~~ 280 (1107)
......++. +|||++|++... .++|.+|++.
T Consensus 244 ------~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 244 ------ENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp ------SSSEEEEEE--TTSSEEEEEECTTTEEEEEEEC
T ss_pred ------cCCceeEEE-ecCCCEEEEEeccCCEEEEEEEe
Confidence 224555664 699999888764 6679999984
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.67 E-value=6.7e-08 Score=119.76 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=125.1
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~ 569 (1107)
.-+|...+|+||++||.|++|....+... +.. ...+. ..|+.+.|+.+|+-+.++..||.+.+|..+..
T Consensus 2215 ~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--~~~-------rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk- 2283 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFEWGHGQQV--VCF-------RTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK- 2283 (2439)
T ss_pred cCCCCCceEEecCCCceEEEEeccCCCeE--EEe-------eccCc-chhhhhhhcccCCceeeeccCCceeecccCCc-
Confidence 55777889999999999999998877633 222 23344 78999999999999999999999999998854
Q ss_pred CCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEE---eCCCeEEEEEcCCCeEEEEeecCCC
Q 001287 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG---FECGRVAVLDMNLLSVLFFTDDISG 646 (1107)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~G---s~dg~V~iwd~~~~~~~~~~~~~~~ 646 (1107)
++..++.|+...+..+|-. ..+|+. ++++.|.+||..-+.....++ ..
T Consensus 2284 -------------------------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~ 2334 (2439)
T KOG1064|consen 2284 -------------------------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC 2334 (2439)
T ss_pred -------------------------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--ee
Confidence 5567788999999999976 446664 468899999986554443334 46
Q ss_pred CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
|.++++.++|. |.-.+|++|+++|.||+||..-..++.+.
T Consensus 2335 H~~gaT~l~~~----------------------P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2335 HDGGATVLAYA----------------------PKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred cCCCceEEEEc----------------------CcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 99999999999 55778999999999999999876665544
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=1.8e-06 Score=101.97 Aligned_cols=176 Identities=12% Similarity=0.088 Sum_probs=115.5
Q ss_pred cEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC---CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEE
Q 001287 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1107)
Q Consensus 58 ~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~ 134 (1107)
.|.++|.++.....+..+..++....|+|||.+|+.++.+ ..|.+||+.+++........+.....+|+|++++|+.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 6777788776655666778899999999999999887653 2599999998875444344555567899999997764
Q ss_pred -EcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CC--eEEEEEccCC
Q 001287 135 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 210 (1107)
Q Consensus 135 -g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg--~V~vwdl~~~ 210 (1107)
.+.+|...||.++..++++.+ +..+. ..+....|+| +++.++..+. +| .|.++|+.++
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~~~----lt~~~------------~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKALTR----ITRHR------------AIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred EEeCCCCeEEEEEECCCCCeEE----CccCC------------CCccceEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 567787667776665565543 33222 3356678988 6776766554 34 4566677776
Q ss_pred EEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc-CCc--EEEEeCCCC
Q 001287 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGD--ILLWNTSTT 282 (1107)
Q Consensus 211 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~-dG~--I~lWd~~~~ 282 (1107)
+...+... .....+.+| +|||++|+..+. ++. |.++|+.++
T Consensus 341 ~~~~Lt~~------------------------------g~~~~~~~~-SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 341 KVSRLTFE------------------------------GEQNLGGSI-TPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CEEEEecC------------------------------CCCCcCeeE-CCCCCEEEEEEecCCceEEEEEECCCC
Confidence 65443211 111234577 499999877655 444 444565543
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.66 E-value=4.5e-05 Score=88.73 Aligned_cols=108 Identities=14% Similarity=0.257 Sum_probs=73.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
+.+++.++.++.|..+|..+++.+........+.. ....++..+++++.+|.++.++ ..+|++.- +....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~~~~v~v~~~~g~l~ald--~~tG~~~W---~~~~~---- 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGADGGLVFVGTEKGEVIALD--AEDGKELW---RAKLS---- 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEcCCEEEEEcCCCEEEEEE--CCCCcEee---eeccC----
Confidence 57888999999999999999999877765554332 1223577899999999765555 44566653 22211
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g 217 (1107)
+.+ ...|.-.+.+++++..+|.|..||.++++.++...
T Consensus 135 ---------~~~---~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 135 ---------SEV---LSPPLVANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred ---------cee---ecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 111 11222234468888899999999999999877653
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.65 E-value=5.6e-07 Score=94.62 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=81.2
Q ss_pred eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEE-cCCCeeeeee--ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS-LESRSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWD-l~s~~~~~~~--~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
...+|...|.....-|...-+++++.|.+++||- .++++.-.++ ..+.+++++++.+....|++|-.+|++.-..+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 3456777777777777666799999999999995 6777776665 456889999999999999999999998777665
Q ss_pred cCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCe
Q 001287 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1107)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~ 201 (1107)
.+-.++... -....|. ..|..+.|.- ..+.+++.+.|..
T Consensus 99 edfnkm~~~-r~~~~h~------------~~v~~~if~~--~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 99 EDFNKMTFL-KDYLAHQ------------ARVSAIVFSL--THEWVLSTGKDKQ 137 (404)
T ss_pred hhhhhcchh-hhhhhhh------------cceeeEEecC--CceeEEEeccccc
Confidence 433333211 1122232 6677777743 4555666666655
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=0.00026 Score=76.19 Aligned_cols=148 Identities=20% Similarity=0.300 Sum_probs=92.5
Q ss_pred CCcEEEEEcCCCe----eeeeeccCCCeEEEEEecCCCEEEEEcCC---CcEEEEEeecCCCceeecceeeccccccccc
Q 001287 97 DNEIQVWSLESRS----LACCLKWESNITAFSVISGSHFMYIGDEN---GLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 97 d~~I~vWDl~s~~----~~~~~~~~~~Vt~l~~~~~~~~l~~g~~d---g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
+.-|.+|++.+.. .+......+.++-++++++.++|+++.++ |.|-.+.+|.++|++... ++..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l-----n~~~---- 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL-----NRQT---- 85 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe-----eccc----
Confidence 4569999998442 23334566889999999999999998654 777788888777887742 1110
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEE-ECCCeEEEEEccC-CEEE---EEeCCccccccccccCCCCCCCCccccCCCC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSE-AQII---FVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~dg~V~vwdl~~-~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1107)
....+.+.|+..+ ++..|+++ |..|.|.++-+.. +.+. ....|... + ..
T Consensus 86 ----~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-----------------~---p~ 139 (346)
T COG2706 86 ----LPGSPPCYVSVDE--DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-----------------G---PH 139 (346)
T ss_pred ----cCCCCCeEEEECC--CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC-----------------C---CC
Confidence 0013458888866 67766665 5668999998866 4332 22222100 0 01
Q ss_pred CCCCCCceeEEEeecCCCCEEEEEEc-CCcEEEEeCC
Q 001287 245 HQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTS 280 (1107)
Q Consensus 245 ~~~~~~~Vtsl~w~spdg~~l~sg~~-dG~I~lWd~~ 280 (1107)
+.++...+.++-+. |++++|++..- .-.|.+|++.
T Consensus 140 ~rQ~~~h~H~a~~t-P~~~~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 140 ERQESPHVHSANFT-PDGRYLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred ccccCCccceeeeC-CCCCEEEEeecCCceEEEEEcc
Confidence 22234446677754 99988877653 2236666665
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.58 E-value=0.00011 Score=80.60 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=116.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC-cEEEEEcCCCeeeeeeccCCCeEEEE
Q 001287 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN-EIQVWSLESRSLACCLKWESNITAFS 124 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~-~I~vWDl~s~~~~~~~~~~~~Vt~l~ 124 (1107)
+|.++|.-+. |+.-|.+....- ....+|.+.|+...+..+..-++.+..|| .|.|+|..+++.-.....-+.|.++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~-~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~ 408 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGY-SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVK 408 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCe-eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEE
Confidence 5788888886 777776653332 34567888899999998888889999998 79999999998877777778999999
Q ss_pred EecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCC----
Q 001287 125 VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---- 200 (1107)
Q Consensus 125 ~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg---- 200 (1107)
+++++++++++.....+ |-+|.++++... +...+ .+-|+.+.||| ++..++-++.+|
T Consensus 409 vs~dGK~~vvaNdr~el--~vididngnv~~----idkS~-----------~~lItdf~~~~--nsr~iAYafP~gy~tq 469 (668)
T COG4946 409 VSPDGKKVVVANDRFEL--WVIDIDNGNVRL----IDKSE-----------YGLITDFDWHP--NSRWIAYAFPEGYYTQ 469 (668)
T ss_pred EcCCCcEEEEEcCceEE--EEEEecCCCeeE----ecccc-----------cceeEEEEEcC--CceeEEEecCcceeee
Confidence 99999999999888765 555544455542 22111 16799999999 677788888887
Q ss_pred eEEEEEccCCEEEEEe
Q 001287 201 LVILWDVSEAQIIFVG 216 (1107)
Q Consensus 201 ~V~vwdl~~~~~~~~~ 216 (1107)
.|+++|+.++++....
T Consensus 470 ~Iklydm~~~Kiy~vT 485 (668)
T COG4946 470 SIKLYDMDGGKIYDVT 485 (668)
T ss_pred eEEEEecCCCeEEEec
Confidence 6899999999876543
No 266
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.57 E-value=3.9e-07 Score=98.14 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCcc----ee---eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee
Q 001287 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIE----GL---LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~----~~---~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~ 110 (1107)
.....++|.+++||++..+.+..+++..... .. ....-...++.+.++.........+....+.+|....++.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3446788999999999999998888774332 22 1222233444444444333333344566788888888888
Q ss_pred eeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 111 ~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
.-.+.|-+.++.++++|+.+++++++.|+.|+|-.|.. ...--.|. -+|. .-|..++..+ +
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa---~f~Iesfc-lGH~------------eFVS~isl~~---~ 205 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA---TFVIESFC-LGHK------------EFVSTISLTD---N 205 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc---ccchhhhc-cccH------------hheeeeeecc---C
Confidence 88889999999999999999999999999999988764 22111121 1333 6788888855 3
Q ss_pred CEEEEEECCCeEEEEEccCCEEEE
Q 001287 191 NRVLIAYENALVILWDVSEAQIIF 214 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~~~~ 214 (1107)
..|++++.|++|++||+.+++.+.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred ceeeecCCCCcEEEEecccCCccc
Confidence 348999999999999999998763
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.56 E-value=6.8e-06 Score=92.89 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=110.1
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCc
Q 001287 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1107)
Q Consensus 493 ~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~ 572 (1107)
.+-..++-|...|.|-++++..+.+... ..-..|.+.|.++.++.+-..|.+++.|+.|..|++...
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~---------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---- 134 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAK---------LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---- 134 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEE---------EecCCCCCcceeeecccccCceEecCCceeEEEEecccc----
Confidence 3444888999999999999999886621 224589999999999999999999999999999999876
Q ss_pred cceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceE
Q 001287 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 652 (1107)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~ 652 (1107)
+.+..+..-+..+.+++++|||+.+++|+. .|++||+++++++ ..+.||.++|.
T Consensus 135 ---------------------~~~~~~~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv---~~ftgh~s~v~ 188 (541)
T KOG4547|consen 135 ---------------------VIIRIWKEQKPLVSSLCISPDGKILLTASR--QIKVLDIETKEVV---ITFTGHGSPVR 188 (541)
T ss_pred ---------------------eeeeeeccCCCccceEEEcCCCCEEEeccc--eEEEEEccCceEE---EEecCCCcceE
Confidence 245566777888999999999999999875 7999999999998 67899999999
Q ss_pred EEEEeec
Q 001287 653 SMTWTEF 659 (1107)
Q Consensus 653 ~l~fs~~ 659 (1107)
++.|...
T Consensus 189 t~~f~~~ 195 (541)
T KOG4547|consen 189 TLSFTTL 195 (541)
T ss_pred EEEEEEe
Confidence 9999965
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=0.00018 Score=77.34 Aligned_cols=263 Identities=14% Similarity=0.158 Sum_probs=161.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCc--ceee--eCCC-CCCEEEEEEEeCCCEEEEEeC-CCcE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGI--EGLL--ISPS-QLPYKNLEFLQNQGFLISITN-DNEI 100 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~d---g~I~iw~~~~~--~~~~--~~~h-~~~V~~l~fs~d~~~L~S~s~-d~~I 100 (1107)
......+.++=|+++|+++.|-++-.+ |.|--|.++.. ...+ ...- ..+-..+++++++++|+++.. .|.|
T Consensus 34 ~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 34 QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 334556788889999999988887655 78888887653 2221 1111 123389999999999999985 6889
Q ss_pred EEEEcCC-Cee---eeeeccCCC----------eEEEEEecCCCEEEEEcC-CCcEEEEEeecCCCceeec-ceeecccc
Q 001287 101 QVWSLES-RSL---ACCLKWESN----------ITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQL-PYNISADA 164 (1107)
Q Consensus 101 ~vWDl~s-~~~---~~~~~~~~~----------Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~~-~~~i~~~~ 164 (1107)
.|.-+.. |.+ +....|.+. +.+.-+.|++++|++.+- --.|.+++++ +|.+... ++.+
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~--dg~L~~~~~~~v---- 187 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD--DGKLTPADPAEV---- 187 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc--cCcccccccccc----
Confidence 9999966 433 233455554 888999999999988864 2346666666 5666532 1111
Q ss_pred cccccCCCCCCCCCeEEEEcccCCCCCEEEEEE-CCCeEEEEEccC--CEEEEEeCCccccccccccCCCCCCCCccccC
Q 001287 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSE--AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1107)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~dg~V~vwdl~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1107)
........|.||| +++...+.. -+++|.+|..+. +++..+.-+. ..+....|
T Consensus 188 ---------~~G~GPRHi~FHp--n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~------------tlP~dF~g-- 242 (346)
T COG2706 188 ---------KPGAGPRHIVFHP--NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID------------TLPEDFTG-- 242 (346)
T ss_pred ---------CCCCCcceEEEcC--CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec------------cCccccCC--
Confidence 1115689999999 677655554 489999999888 4443333220 11111122
Q ss_pred CCCCCCCCCceeEEEeecCCCCEEEEEEc-CCcEEEEeCCCCCCCCCccCCCCCceeeeecccccCccceEEEEeecccc
Q 001287 242 ISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKE 320 (1107)
Q Consensus 242 ~~~~~~~~~~Vtsl~w~spdg~~l~sg~~-dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~ 320 (1107)
......+. .++||++|+++-. ...|.++.+.... ....+........ .....
T Consensus 243 -------~~~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~~~-----------g~L~~~~~~~teg--------~~PR~ 295 (346)
T COG2706 243 -------TNWAAAIH-ISPDGRFLYASNRGHDSIAVFSVDPDG-----------GKLELVGITPTEG--------QFPRD 295 (346)
T ss_pred -------CCceeEEE-ECCCCCEEEEecCCCCeEEEEEEcCCC-----------CEEEEEEEeccCC--------cCCcc
Confidence 34455566 4699999988754 2367777775331 1111110000000 01111
Q ss_pred cCCCCCceEEEEeCCCCCCcceEEEEEcCcccc
Q 001287 321 SRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1107)
Q Consensus 321 ~~~~~d~~llv~gg~~~~~~~~ltvl~l~~~~~ 353 (1107)
......+++|+..+++. +.+++...+..++
T Consensus 296 F~i~~~g~~Liaa~q~s---d~i~vf~~d~~TG 325 (346)
T COG2706 296 FNINPSGRFLIAANQKS---DNITVFERDKETG 325 (346)
T ss_pred ceeCCCCCEEEEEccCC---CcEEEEEEcCCCc
Confidence 23567788888887764 4577777765554
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.53 E-value=0.00038 Score=77.90 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=68.6
Q ss_pred CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC----------CCcEEEEEeecCCCceeecceeeccccccc
Q 001287 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 98 ~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~----------dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
+.|.|.|..+++++..+.....-..+ ++|+++.++++.. +..|.|||..+ .+.... ..++... +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~-i~~p~~p--~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIAD-IELPEGP--R 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeE-EccCCCc--h
Confidence 88999999999999888544333344 9999999998876 67788887664 344321 1122110 0
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEE-C-CCeEEEEEccCCEEEEE
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-E-NALVILWDVSEAQIIFV 215 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~-~-dg~V~vwdl~~~~~~~~ 215 (1107)
+. .......++++| +|++|++.. . +..|.+.|+.+++++..
T Consensus 101 -~~----~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~e 143 (352)
T TIGR02658 101 -FL----VGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEGKAFVRM 143 (352)
T ss_pred -hh----ccCccceEEECC--CCCEEEEecCCCCCEEEEEECCCCcEEEE
Confidence 00 012344667766 787777655 3 67888999988887653
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.52 E-value=1e-06 Score=94.95 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=116.3
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCc--eeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPV--FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~--l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~ 567 (1107)
..++.++++|.+-.+....++++.... .+++- ...-...-+++.|..+.....++..-|.++-++.-.
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~----------~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD----------VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeee----------EeecccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 678889999998877776666655333 11111 111112456777777777777776666666555543
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCC
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 647 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h 647 (1107)
... .+.....+|-..++.|+++||+++|.++..|..|+|-......++- .-.-||
T Consensus 139 ~~~-----------------------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie--sfclGH 193 (390)
T KOG3914|consen 139 ADS-----------------------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE--SFCLGH 193 (390)
T ss_pred ccc-----------------------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh--hhcccc
Confidence 210 0122335899999999999999999999999999999998877762 233589
Q ss_pred CCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 648 ~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
..-|..++... +..|++++.|++|++||..+|+.+.++
T Consensus 194 ~eFVS~isl~~-----------------------~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 194 KEFVSTISLTD-----------------------NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred Hhheeeeeecc-----------------------CceeeecCCCCcEEEEecccCCccccc
Confidence 99999998772 445899999999999999999998666
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.52 E-value=1.8e-06 Score=90.82 Aligned_cols=220 Identities=18% Similarity=0.224 Sum_probs=137.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce---e---eeCCCC------------CCEEEEEEEeCCC--EEEEEeC
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG---L---LISPSQ------------LPYKNLEFLQNQG--FLISITN 96 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~---~---~~~~h~------------~~V~~l~fs~d~~--~L~S~s~ 96 (1107)
-|+++.|+-.|.+||+|..+|+|.+|..+.... . ....|+ ..|..+.|.+++. ..+..+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 489999999999999999999999998744321 1 222232 3578888887643 4555667
Q ss_pred CCcEEEEEcCCCeeee---------------ee----------------------ccCCCeEEEEEecCCCEEEEEcCCC
Q 001287 97 DNEIQVWSLESRSLAC---------------CL----------------------KWESNITAFSVISGSHFMYIGDENG 139 (1107)
Q Consensus 97 d~~I~vWDl~s~~~~~---------------~~----------------------~~~~~Vt~l~~~~~~~~l~~g~~dg 139 (1107)
|.+|++|.+..+.... ++ .|+-.|.+++++.+...+++++ |=
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ce
Confidence 9999999986542111 01 2334688999999988877775 44
Q ss_pred cEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCc
Q 001287 140 LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGK 219 (1107)
Q Consensus 140 ~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~ 219 (1107)
.|.+|+++..++.+.- ..+..+...+. +..|++..|||. ..+.++-.++.|+|++-|++...+-- .|+
T Consensus 186 RINLWnlei~d~sFnI--VDIKP~nmEeL-------teVITsaEFhp~-~cn~f~YSSSKGtIrLcDmR~~aLCd--~hs 253 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNI--VDIKPANMEEL-------TEVITSAEFHPH-HCNVFVYSSSKGTIRLCDMRQSALCD--AHS 253 (433)
T ss_pred eeeeccccccCCceeE--EEccccCHHHH-------HHHHhhhccCHh-HccEEEEecCCCcEEEeechhhhhhc--chh
Confidence 5788998864443321 11222111111 145889999997 55668888999999999998643210 010
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
.+.-. ... +...++..+. -..|..+-| +++|++|++-.. -+|++||+.-.
T Consensus 254 KlfEe-ped---p~~rsffsei-------IsSISDvKF-s~sGryilsRDy-ltvk~wD~nme 303 (433)
T KOG1354|consen 254 KLFEE-PED---PSSRSFFSEI-------ISSISDVKF-SHSGRYILSRDY-LTVKLWDLNME 303 (433)
T ss_pred hhhcc-ccC---CcchhhHHHH-------hhhhhceEE-ccCCcEEEEecc-ceeEEEecccc
Confidence 00000 000 1111111111 235566776 599999987643 57999999644
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.49 E-value=8.5e-06 Score=92.16 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=133.4
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCcceeeeC----CCCCCEEEEEEE--------------------eCCCEEEEEeCCCc
Q 001287 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLIS----PSQLPYKNLEFL--------------------QNQGFLISITNDNE 99 (1107)
Q Consensus 44 sp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~----~h~~~V~~l~fs--------------------~d~~~L~S~s~d~~ 99 (1107)
+|-+.++|..+.||++|||+.......... .-++..+++.|. .|...++-+...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 566789999999999999998554433222 123334444432 12345777778999
Q ss_pred EEEEEcCCCeeeeee---ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCC
Q 001287 100 IQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1107)
Q Consensus 100 I~vWDl~s~~~~~~~---~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1107)
|.++++..+++...+ .|.+.|+++.++.+-..+++++.|+.+..|+... +.+... .....
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~~~---~~~~~------------ 144 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE--KVIIRI---WKEQK------------ 144 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc--ceeeee---eccCC------------
Confidence 999999999988777 5889999999999999999999999998888663 233321 22211
Q ss_pred CCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE-eCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEE
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl 255 (1107)
..+.+++..| ++..+++|+ +.|++||+++++++.. .|| .++|.++
T Consensus 145 ~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh------------------------------~s~v~t~ 190 (541)
T KOG4547|consen 145 PLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGH------------------------------GSPVRTL 190 (541)
T ss_pred CccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCC------------------------------CcceEEE
Confidence 5588889987 688777665 6799999999988664 456 6788888
Q ss_pred EeecCC-----CCEEEEEE-cCCcEEEEeCCC
Q 001287 256 CWASSS-----GSILAVGY-IDGDILLWNTST 281 (1107)
Q Consensus 256 ~w~spd-----g~~l~sg~-~dG~I~lWd~~~ 281 (1107)
.|. .+ |.+++++. .+..+.+|-...
T Consensus 191 ~f~-~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 191 SFT-TLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEE-EeccccccceeeeccccccceeEEEEEc
Confidence 865 44 66666654 345577776654
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.47 E-value=6.7e-07 Score=111.29 Aligned_cols=193 Identities=9% Similarity=0.120 Sum_probs=141.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCC--cceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDG--IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~--~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
.+.++.-+|.-.+-.+|+.||.|++|.-.. ..+......+..|+.+.|+.+|+....+..||.|.+|.+..+-+..-.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~q 2289 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQ 2289 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccc
Confidence 466777889999999999999999987632 233355555689999999999999988899999999999854444334
Q ss_pred ccCCCeEEEEEecCCCEEEEEc---CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 115 KWESNITAFSVISGSHFMYIGD---ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~---~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
-|....+.+.|.. ..+++.+ .++++.+||--.....-. .-..|. +.++++++-| ...
T Consensus 2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~----v~~~H~------------~gaT~l~~~P--~~q 2349 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL----VHTCHD------------GGATVLAYAP--KHQ 2349 (2439)
T ss_pred cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce----eeeecC------------CCceEEEEcC--cce
Confidence 5666777777765 4455543 468888998543211111 113333 8899999988 566
Q ss_pred EEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC
Q 001287 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1107)
Q Consensus 192 ~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d 271 (1107)
.|++|+.+|.|.+||++..+++..+.. |. ...++++|+..
T Consensus 2350 llisggr~G~v~l~D~rqrql~h~~~~--------------------------------------~~--~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLRHTFQA--------------------------------------LD--TREYFVTGSSE 2389 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHHHHHhhh--------------------------------------hh--hhheeeccCcc
Confidence 799999999999999998876654421 22 45689999999
Q ss_pred CcEEEEeCCCCCCCCCcc
Q 001287 272 GDILLWNTSTTASTKGQQ 289 (1107)
Q Consensus 272 G~I~lWd~~~~~~~~~~~ 289 (1107)
|.|+||++.........+
T Consensus 2390 g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cceEEEEccccchhhcCc
Confidence 999999998765544433
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.44 E-value=0.0004 Score=90.03 Aligned_cols=232 Identities=13% Similarity=0.101 Sum_probs=124.7
Q ss_pred eeeeecCCCCCeEEEEEcCCCCEEEEEECCCc-----------EEEEeCCCc------ceeee---------CCCCCCEE
Q 001287 27 RIAVHYGIPATASILAFDHIQRLLAIATLDGR-----------IKVIGGDGI------EGLLI---------SPSQLPYK 80 (1107)
Q Consensus 27 ~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~-----------I~iw~~~~~------~~~~~---------~~h~~~V~ 80 (1107)
.....||+.+-.+.+-++++|++++.-..... +..|..... ...+. .+-.-| .
T Consensus 493 ~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~P-~ 571 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYYGEKKLLDSTPLPLSLEKDNDPRLLTSPLKFP-G 571 (1057)
T ss_pred HHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhhccccccccCCCcccccccCCcccccccCCCC-c
Confidence 34556889999999999999998866322110 111111000 00000 111112 4
Q ss_pred EEEEEeCCC-EEEEEeCCCcEEEEEcCCCeeeeeec--c------------CCCeEEEEEecCCCEEEEEcCC-CcEEEE
Q 001287 81 NLEFLQNQG-FLISITNDNEIQVWSLESRSLACCLK--W------------ESNITAFSVISGSHFMYIGDEN-GLMSVI 144 (1107)
Q Consensus 81 ~l~fs~d~~-~L~S~s~d~~I~vWDl~s~~~~~~~~--~------------~~~Vt~l~~~~~~~~l~~g~~d-g~V~vw 144 (1107)
.++++++++ ..++-+.++.|.+||.........-. . -.....++++++++.|++++.. +.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 678887544 55555567889999987654322211 0 0236789999999988888754 556665
Q ss_pred EeecCCCceeecceeeccccccc-cc--CCC--CCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCc
Q 001287 145 KYDADEGKLFQLPYNISADALSE-KA--GFP--LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGK 219 (1107)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~-~~--~~~--~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~ 219 (1107)
++.. +.+.. +.+..... .+ +.. .........|+++|. ++..+++.+.++.|++||..++.+..+.+..
T Consensus 652 d~~~--~~V~t----lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G 724 (1057)
T PLN02919 652 DFVN--ETVRT----LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRVFSGDG 724 (1057)
T ss_pred ecCC--CEEEE----EeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEEEecCC
Confidence 5543 33321 11100000 00 000 000134578999884 4555566677889999999888765443320
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEE-EEEcCCcEEEEeCCCC
Q 001287 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA-VGYIDGDILLWNTSTT 282 (1107)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~-sg~~dG~I~lWd~~~~ 282 (1107)
... ...+.. .....-...+.+++. |+|..|+ +-+.++.|++||+.++
T Consensus 725 -~~~------------~~~g~~--~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 725 -YER------------NLNGSS--GTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred -ccc------------cCCCCc--cccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCC
Confidence 000 000000 000012345678875 8988554 4556789999998643
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.43 E-value=0.0058 Score=67.57 Aligned_cols=147 Identities=15% Similarity=0.143 Sum_probs=112.0
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCc-eEEEEEecCCCCCc
Q 001287 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG-LVYIYNLNGSLDAK 572 (1107)
Q Consensus 494 ~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg-~V~vw~~~~~~~~~ 572 (1107)
+|++++.-+. |...|.+...+... --+|...|.-..+..++.-++.|..|| .+-||+..+.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~i-------------qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---- 392 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSI-------------QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---- 392 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeE-------------EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----
Confidence 5567777664 55555554433311 126667798889999999999999999 8999998886
Q ss_pred cceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceE
Q 001287 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 652 (1107)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~ 652 (1107)
....+...-+.|.++..+++|++++++.....++++|+.++.+..-.+. --.-|+
T Consensus 393 ----------------------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS---~~~lIt 447 (668)
T COG4946 393 ----------------------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS---EYGLIT 447 (668)
T ss_pred ----------------------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc---ccceeE
Confidence 2455667788999999999999999999999999999999987632222 446688
Q ss_pred EEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCc----eEEEEeCCCccee
Q 001287 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDA----KISIVGGSSENMI 705 (1107)
Q Consensus 653 ~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg----~v~v~d~~~g~~i 705 (1107)
...|+ |+..+++-+--+| +|.++|..+|+..
T Consensus 448 df~~~----------------------~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 448 DFDWH----------------------PNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EEEEc----------------------CCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 88888 4567777777775 6889999988865
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.39 E-value=7e-05 Score=96.89 Aligned_cols=227 Identities=14% Similarity=0.108 Sum_probs=137.9
Q ss_pred CeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCcceeeeCCC-----------------CCCEEEEEEEe-CCCEEEEEeCC
Q 001287 37 TASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPS-----------------QLPYKNLEFLQ-NQGFLISITND 97 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~-dg~I~iw~~~~~~~~~~~~h-----------------~~~V~~l~fs~-d~~~L~S~s~d 97 (1107)
.+..+++++++..|.++.. +++|++++..+..+..+.+- -..-..|+|++ ++...++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 3567899999887766654 47899999866555433210 01125789999 45555666778
Q ss_pred CcEEEEEcCCCeeeeeec---------------cCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeec
Q 001287 98 NEIQVWSLESRSLACCLK---------------WESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNIS 161 (1107)
Q Consensus 98 ~~I~vWDl~s~~~~~~~~---------------~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~ 161 (1107)
+.|.+||..++....... .-...+.+++++++++|++++ .++.|++|+++.....+........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 999999998876532211 012456799999999777765 4688888887642211110000000
Q ss_pred ccccccccCC-----CCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCC
Q 001287 162 ADALSEKAGF-----PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1107)
Q Consensus 162 ~~~~~~~~~~-----~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 236 (1107)
.... ..++. .........++++.| +|+.+++-+.++.|++||..++.+..+.+... ...
T Consensus 785 ~~~l-~~fG~~dG~g~~~~l~~P~Gvavd~--dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~-------------~G~ 848 (1057)
T PLN02919 785 SDNL-FKFGDHDGVGSEVLLQHPLGVLCAK--DGQIYVADSYNHKIKKLDPATKRVTTLAGTGK-------------AGF 848 (1057)
T ss_pred Cccc-ccccCCCCchhhhhccCCceeeEeC--CCcEEEEECCCCEEEEEECCCCeEEEEeccCC-------------cCC
Confidence 0000 00000 001123457888876 67777777888999999999988776554210 000
Q ss_pred ccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 237 ~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
..|.. ....-.....+++. ++|+.+++-+.++.|++||+.++.
T Consensus 849 ~dG~~---~~a~l~~P~GIavd-~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 849 KDGKA---LKAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCcc---cccccCCceEEEEe-CCCCEEEEECCCCEEEEEECCCCc
Confidence 00000 01113356678864 999988888899999999998764
No 277
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.39 E-value=1.2e-05 Score=84.78 Aligned_cols=118 Identities=11% Similarity=0.135 Sum_probs=76.8
Q ss_pred cEEEEEecCCcEEEEeCCCCceeE----EEeeccceeee-eecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCC
Q 001287 496 RVYLAGYHDGSVRIWDATYPVFKL----ICALDAEVQGI-EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1107)
Q Consensus 496 ~~laTgs~DgtIriWd~~~~~l~~----~~~l~~~~~~~-~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~ 570 (1107)
++++-.+.-|+||+-|+....+-. ++......... -+.+--..|..+.|+++|+++++-+ .-+|+|||+.....
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~ 305 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAK 305 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCC
Confidence 467777889999999988443211 11111110000 1223335789999999999998644 46999999976533
Q ss_pred CccceeeccCcCcceecccCCcceeEEEEeec------------CcC---EEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001287 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLV------------NSP---VRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h------------~~~---Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~ 635 (1107)
. +.++..| +.. -.-++|+.++.++++|+-...+++++...+
T Consensus 306 p------------------------v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 306 P------------------------VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred c------------------------ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 2 2222222 112 235789999999999999999999997666
Q ss_pred eEE
Q 001287 636 SVL 638 (1107)
Q Consensus 636 ~~~ 638 (1107)
...
T Consensus 362 sk~ 364 (433)
T KOG1354|consen 362 SKE 364 (433)
T ss_pred cce
Confidence 543
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.31 E-value=0.00027 Score=79.07 Aligned_cols=204 Identities=12% Similarity=0.062 Sum_probs=129.4
Q ss_pred EcCCCCEEEEEEC----------CCcEEEEeCCCcceeeeCCC--------CCCEEEEEEEeCCCEEEEEe-C-CCcEEE
Q 001287 43 FDHIQRLLAIATL----------DGRIKVIGGDGIEGLLISPS--------QLPYKNLEFLQNQGFLISIT-N-DNEIQV 102 (1107)
Q Consensus 43 fsp~~~~LA~Gs~----------dg~I~iw~~~~~~~~~~~~h--------~~~V~~l~fs~d~~~L~S~s-~-d~~I~v 102 (1107)
++||++.|.++.. +..|.+||....+.+-..+. ...-..++++|||++|+... + ++.|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999988876 69999999987766633322 11234788999999988766 3 789999
Q ss_pred EEcCCCeeeeeeccCCC--------------------------------eEEEEE--------------ec-CCCEEEEE
Q 001287 103 WSLESRSLACCLKWESN--------------------------------ITAFSV--------------IS-GSHFMYIG 135 (1107)
Q Consensus 103 WDl~s~~~~~~~~~~~~--------------------------------Vt~l~~--------------~~-~~~~l~~g 135 (1107)
.|+.+++.+..+.-++. +....+ .+ ++.++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 99999988765532211 011111 12 55666666
Q ss_pred cCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE----------CCCeEEEE
Q 001287 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY----------ENALVILW 205 (1107)
Q Consensus 136 ~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~----------~dg~V~vw 205 (1107)
.+ |+|++.++....-... .++.+...... ...-.++.+.-++++| ++++++++. ..+.|.++
T Consensus 213 ~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~----~~~wrP~g~q~ia~~~--dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFL-PAIEAFTEAEK----ADGWRPGGWQQVAYHR--ARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred cC-CeEEEEecCCCcceec-ceeeecccccc----ccccCCCcceeEEEcC--CCCEEEEEecCCccccccCCCCEEEEE
Confidence 66 7777766543211111 11111110000 0001124445589987 677788743 22479999
Q ss_pred EccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCC-EEEEEE-cCCcEEEEeCCCCC
Q 001287 206 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTSTTA 283 (1107)
Q Consensus 206 dl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~-~l~sg~-~dG~I~lWd~~~~~ 283 (1107)
|..+.+.+....- ...+..+++ +|||+ +|++.. .++.|.+.|..+.+
T Consensus 285 D~~t~kvi~~i~v------------------------------G~~~~~iav-S~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 285 DAKTGKRLRKIEL------------------------------GHEIDSINV-SQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ECCCCeEEEEEeC------------------------------CCceeeEEE-CCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9999988765422 446777885 69999 887666 68899999998774
Q ss_pred CC
Q 001287 284 ST 285 (1107)
Q Consensus 284 ~~ 285 (1107)
..
T Consensus 334 ~i 335 (352)
T TIGR02658 334 EL 335 (352)
T ss_pred EE
Confidence 33
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00014 Score=84.77 Aligned_cols=158 Identities=8% Similarity=-0.001 Sum_probs=103.1
Q ss_pred CeEEEEEcCCCCE-EEEEECC---CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe-CC--CcEEEEEcCCCe
Q 001287 37 TASILAFDHIQRL-LAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-ND--NEIQVWSLESRS 109 (1107)
Q Consensus 37 ~i~~lafsp~~~~-LA~Gs~d---g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-~d--~~I~vWDl~s~~ 109 (1107)
.+....|+||++. ++..+.+ ..|+++++.+.+...+....+.+....|+|||.+|+-.. .+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 4667899999984 7755443 568889997776665555667778889999998776543 33 468888998886
Q ss_pred eeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 110 LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 110 ~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
........+....-.|+|+++.|+..+ ..|.-.||.++...+...+. .... .. ...|+|
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl----t~~g------------~~--~~~~SP-- 328 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV----VFHG------------KN--NSSVST-- 328 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC----ccCC------------Cc--CceECC--
Confidence 544434444344568999998776554 45655666666655665442 1111 11 137888
Q ss_pred CCCEEEEEECC---------CeEEEEEccCCEEEE
Q 001287 189 SGNRVLIAYEN---------ALVILWDVSEAQIIF 214 (1107)
Q Consensus 189 ~~~~ll~~~~d---------g~V~vwdl~~~~~~~ 214 (1107)
+|+.++..... ..|.+.|+.++....
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~ 363 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR 363 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE
Confidence 67766655543 256777777776543
No 280
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=1.7e-05 Score=92.57 Aligned_cols=189 Identities=15% Similarity=0.171 Sum_probs=133.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~ 115 (1107)
..++|++++ .+++|.|+.+|.|++++.++.. .....|... ..+|.+++|||.||.|.|-.+-+.+..+.+.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 457888887 6999999999999999987765 334444433 5578999999999999999999999999999
Q ss_pred cCCCeEEEEEecC-----CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 116 WESNITAFSVISG-----SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 116 ~~~~Vt~l~~~~~-----~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
...++.+++++|+ .+++++|+..| +.+..- .+.+ ++.+. ......++|.++.| .|
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er-----~wlg--nk~~v--------~l~~~eG~I~~i~W----~g 170 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER-----NWLG--NKDSV--------VLSEGEGPIHSIKW----RG 170 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehh-----hhhc--Cccce--------eeecCccceEEEEe----cC
Confidence 9999999999998 46889998888 433221 1111 10110 11222389999999 67
Q ss_pred CEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc
Q 001287 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1107)
Q Consensus 191 ~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~ 270 (1107)
++++-+..+|+ +|||..+.+.+.....- ...++. +.--..++|. +...|+.|-.
T Consensus 171 ~lIAWand~Gv-~vyd~~~~~~l~~i~~p------------~~~~R~-----------e~fpphl~W~--~~~~LVIGW~ 224 (846)
T KOG2066|consen 171 NLIAWANDDGV-KVYDTPTRQRLTNIPPP------------SQSVRP-----------ELFPPHLHWQ--DEDRLVIGWG 224 (846)
T ss_pred cEEEEecCCCc-EEEeccccceeeccCCC------------CCCCCc-----------ccCCCceEec--CCCeEEEecC
Confidence 76777777775 99999998876554321 100000 2233468896 4556777765
Q ss_pred CCcEEEEeCC
Q 001287 271 DGDILLWNTS 280 (1107)
Q Consensus 271 dG~I~lWd~~ 280 (1107)
| +|++..+.
T Consensus 225 d-~v~i~~I~ 233 (846)
T KOG2066|consen 225 D-SVKICSIK 233 (846)
T ss_pred C-eEEEEEEe
Confidence 5 58887776
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.23 E-value=0.00016 Score=75.48 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=75.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCC-------CCCEEEEEEEeCC------CEEEEEeCCCcEEEEEc
Q 001287 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS-------QLPYKNLEFLQNQ------GFLISITNDNEIQVWSL 105 (1107)
Q Consensus 39 ~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h-------~~~V~~l~fs~d~------~~L~S~s~d~~I~vWDl 105 (1107)
.-++||||+.+||.+...|.|++||+-+.+...+.+- ..+|..|.|.+.. ..|+....+|.++-+-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 4699999999999999999999999988777755542 2478888887642 25788888888887776
Q ss_pred CCC-----eeeeeec----cCCCeEEEEEecCCCEEEEEcC
Q 001287 106 ESR-----SLACCLK----WESNITAFSVISGSHFMYIGDE 137 (1107)
Q Consensus 106 ~s~-----~~~~~~~----~~~~Vt~l~~~~~~~~l~~g~~ 137 (1107)
..+ +..+++. ++..|+++.++|..++|++|+.
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 332 2233332 4678999999999999888864
No 282
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.22 E-value=0.0086 Score=69.03 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=83.3
Q ss_pred EEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceec
Q 001287 508 RIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHAL 587 (1107)
Q Consensus 508 riWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1107)
.+|++...+++.+... --...+.|.|++++|+...|+.|+.||.|++|+....
T Consensus 239 ciYE~~r~klqrvsvt--------sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~------------------- 291 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVT--------SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG------------------- 291 (545)
T ss_pred EEEEeecCceeEEEEE--------EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-------------------
Confidence 5677766665533221 1245568999999999999999999999999998775
Q ss_pred ccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE-------------EEeecCCCCCCceEEE
Q 001287 588 PEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL-------------FFTDDISGSSSPIISM 654 (1107)
Q Consensus 588 ~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~-------------~~~~~~~~h~~~V~~l 654 (1107)
+..+....-..+.++|+|+|..+++|++.|.+.+||+.-..+. ++...+..++.....+
T Consensus 292 --------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~i 363 (545)
T PF11768_consen 292 --------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHI 363 (545)
T ss_pred --------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhhee
Confidence 2233345566889999999999999999999999998643332 2233333455556666
Q ss_pred EEe
Q 001287 655 TWT 657 (1107)
Q Consensus 655 ~fs 657 (1107)
+|.
T Consensus 364 qW~ 366 (545)
T PF11768_consen 364 QWA 366 (545)
T ss_pred Eec
Confidence 666
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.20 E-value=5.3e-05 Score=77.46 Aligned_cols=151 Identities=10% Similarity=0.056 Sum_probs=109.1
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCC--CCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccce
Q 001287 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR--APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1107)
Q Consensus 498 laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~--~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~ 575 (1107)
+..++.|.++++.+++.+.... .-|. ..+.++++++|++++++.++...|..|.++...+-
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~-------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey---- 193 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF-------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY---- 193 (344)
T ss_pred eeeccCCcceeEEEEecCcccc-------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce----
Confidence 4556788999999988777541 1121 24788999999999999999999999999886431
Q ss_pred eeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE--eecCCCCCCceEE
Q 001287 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFF--TDDISGSSSPIIS 653 (1107)
Q Consensus 576 ~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~--~~~~~~h~~~V~~ 653 (1107)
........-...--+..|+.....+|+++.||++.|||++....... ...-+.|.+.|..
T Consensus 194 ------------------~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 194 ------------------IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRV 255 (344)
T ss_pred ------------------eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEE
Confidence 01111222344556788999999999999999999999987654322 1223458999999
Q ss_pred EEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 654 l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
+.|+.... -++|+..-.=+.+.|.|..++.
T Consensus 256 c~Fsl~g~--------------------lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 256 CRFSLYGL--------------------LDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEecCCCc--------------------ceEEEEecCcceEEEEEcccCc
Confidence 99996422 3456666666789999988755
No 284
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.00062 Score=79.66 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=86.9
Q ss_pred eEEEEEcCCCCEEEEEEC----CCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001287 38 ASILAFDHIQRLLAIATL----DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~----dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~ 113 (1107)
.+...|+|...++|+++- .|.|-||--.+.- -.-..-.-.+++|+|+|..-.|+++-.-|.+.||...+.+.-+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEP-qr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEP-QRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCCC-CcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 455789999999999874 4888888644331 11111223467899999977788888889999999988876544
Q ss_pred e-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 114 L-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 114 ~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
. .|+.+|..+.|+++|..|.+++.-|.|..|.+|.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 3 7899999999999999999999999999999995
No 285
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.00014 Score=85.46 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-----CCcEEEEeCCC---ccee-eeCCCCCCEEEEEEEeCCCEEEEEeC-CCcEEEE-
Q 001287 35 PATASILAFDHIQRLLAIATL-----DGRIKVIGGDG---IEGL-LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVW- 103 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~-----dg~I~iw~~~~---~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vW- 103 (1107)
++.....+|+|||+.||..+. +..+.+|++.. .... +...+.+.....+|+|||.+|+..+. ++...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 344456789999999988663 22344466543 1222 22223344567899999998887774 5655555
Q ss_pred -EcCC-Ceeeeee-ccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 104 -SLES-RSLACCL-KWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 104 -Dl~s-~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
++.. +.....+ .....+....|+|++++|+... .+|.-.||.++..+++..+ +.... ..+
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----Lt~~~------------~~~ 373 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----LTTSP------------ENK 373 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----ccCCC------------CCc
Confidence 4432 2222222 3345677889999999887654 3443334444444455543 22111 235
Q ss_pred EEEEcccCCCCCEEEEEEC---CCeEEEEEccCCEEEEEe
Q 001287 180 VGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~---dg~V~vwdl~~~~~~~~~ 216 (1107)
....|+| +|+.|+.... ...|.+||+.+++...+.
T Consensus 374 ~~p~wSp--DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 374 ESPSWAI--DSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 6788988 6776665443 346788898887665443
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.001 Score=77.60 Aligned_cols=139 Identities=9% Similarity=0.017 Sum_probs=88.3
Q ss_pred CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCE-EEEEeCC---CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEE
Q 001287 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGF-LISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 132 (1107)
Q Consensus 57 g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~-L~S~s~d---~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l 132 (1107)
..|.+-|.++.......... .+....|+|||.+ ++..+.+ ..|.++|+.+++........+...+..|+|+++.+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence 35666555555433233333 7889999999985 5544443 45999999998776665667777788999999877
Q ss_pred EE-EcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECC-C--eEEEEEcc
Q 001287 133 YI-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVS 208 (1107)
Q Consensus 133 ~~-g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d-g--~V~vwdl~ 208 (1107)
+. .+.+|.-.||.++...+.+.+ +..+. .......|+| +|++|+..+.. | .|.+.|+.
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~------------~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYP------------GIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEEE----cccCC------------CccCccEECC--CCCEEEEEECCCCCceEEEEECC
Confidence 64 444655566776665565554 22211 1123346888 67767666543 3 56777777
Q ss_pred CCEEEE
Q 001287 209 EAQIIF 214 (1107)
Q Consensus 209 ~~~~~~ 214 (1107)
++....
T Consensus 310 ~g~~~r 315 (419)
T PRK04043 310 SGSVEQ 315 (419)
T ss_pred CCCeEe
Confidence 776543
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.13 E-value=2.1e-05 Score=81.63 Aligned_cols=222 Identities=17% Similarity=0.250 Sum_probs=136.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc---eee---eCCCCC------------CEEEEEEEeCCC--EEEEEe
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GLL---ISPSQL------------PYKNLEFLQNQG--FLISIT 95 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~---~~~---~~~h~~------------~V~~l~fs~d~~--~L~S~s 95 (1107)
..|+++.|+..|.+||+|...|+|.+|...... ..+ ...|+. .|..+.|..+++ ..+..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 459999999999999999999999999875443 222 223332 467777876543 455566
Q ss_pred CCCcEEEEEcCCCee-------------------eee--------e-----------------ccCCCeEEEEEecCCCE
Q 001287 96 NDNEIQVWSLESRSL-------------------ACC--------L-----------------KWESNITAFSVISGSHF 131 (1107)
Q Consensus 96 ~d~~I~vWDl~s~~~-------------------~~~--------~-----------------~~~~~Vt~l~~~~~~~~ 131 (1107)
.|.+|++|.+..+.+ +.+ + .|+-.|.+++++.+...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 799999999865411 000 0 12335778888888877
Q ss_pred EEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE
Q 001287 132 MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 132 l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
+++++ +=.|.+|+++.-++.+.- ..+..|...+. +..|++..|||. ....+.-.++.|.|++-|++...
T Consensus 187 ~lSaD-dLrINLWnl~i~D~sFnI--VDiKP~nmeeL-------teVItSaeFhp~-~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 187 LLSAD-DLRINLWNLEIIDGSFNI--VDIKPHNMEEL-------TEVITSAEFHPE-MCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeecc-ceeeeeccccccCCceEE--EeccCccHHHH-------HHHHhhcccCHh-HcceEEEecCCCcEEehhhhhhh
Confidence 77664 455788998876665442 22333322111 145888999996 45567788899999999998543
Q ss_pred EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 212 IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 212 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
+---. .+-++.. +. +....+..+. ...|..+-| +++|++|++-.. -++++||.....
T Consensus 256 lcdn~-~klfe~~--~D---~v~~~ff~ei-------vsSISD~kF-s~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 256 LCDNS-KKLFELT--ID---GVDVDFFEEI-------VSSISDFKF-SDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hccCc-hhhhhhc--cC---cccchhHHHH-------hhhhcceEE-cCCCcEEEEecc-ceEEEEeccccc
Confidence 21000 0000000 00 0000011100 335566676 599998887654 579999997654
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.13 E-value=0.0015 Score=72.99 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCCCCeEEEEEEeCCCeEEEec--cCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEE
Q 001287 534 GSRAPVSTLSFCFINSSLAVGN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 611 (1107)
Q Consensus 534 ~h~~~Vt~l~fspd~~~Lasg~--~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~ 611 (1107)
+...+|...+|.|+++.+++.+ ....+-++++..+ .++....++=..+-|
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------------------------l~~~~Pe~~rNT~~f 323 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------------------------LRFYFPEQKRNTIFF 323 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc----------------------------eEEecCCcccccccc
Confidence 4456899999999998877655 5678888888876 556677777788999
Q ss_pred cCCCCEEEEEe---CCCeEEEEEcCCCeEE
Q 001287 612 TSSGAKLAVGF---ECGRVAVLDMNLLSVL 638 (1107)
Q Consensus 612 sp~~~~la~Gs---~dg~V~iwd~~~~~~~ 638 (1107)
||.++++.+++ -.|.+-+||..+.-++
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceEE
Confidence 99999988744 4578999999887665
No 289
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.13 E-value=8.6e-06 Score=59.98 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=35.9
Q ss_pred eeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001287 594 LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1107)
Q Consensus 594 ~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd 631 (1107)
+++..+.+|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36788999999999999999999999999999999997
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.12 E-value=3.6e-05 Score=78.40 Aligned_cols=151 Identities=16% Similarity=0.186 Sum_probs=94.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEE-----EEEEeCCCEEEEEe-----CCCcEEEEEcCCCee
Q 001287 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKN-----LEFLQNQGFLISIT-----NDNEIQVWSLESRSL 110 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~-----l~fs~d~~~L~S~s-----~d~~I~vWDl~s~~~ 110 (1107)
-+.+--+..+++|..||.+-+++.+. .+...|.-++.. .++...+.++.+.. .-+..+.|+++..+.
T Consensus 95 ~~~s~~~t~V~~~~~dg~~~v~s~~~---~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t 171 (319)
T KOG4714|consen 95 DACTMTDNRVCIGYADGSLAVFSTDK---DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT 171 (319)
T ss_pred ccccccCCceEecCCCceEEEEechH---HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc
Confidence 34444567889999999999998866 222223222221 12223333443322 233455555554432
Q ss_pred ee-eeccCCCeEEEEEecCCC-EEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 111 AC-CLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 111 ~~-~~~~~~~Vt~l~~~~~~~-~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
+. .......|++++.+|..+ .+++|+.+|.+-+|+..... ... -.+..|+ .++.-|-|||.
T Consensus 172 ~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~---S~l~ahk------------~~i~eV~FHpk- 234 (319)
T KOG4714|consen 172 LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPV---SLLKAHK------------AEIWEVHFHPK- 234 (319)
T ss_pred ccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chH---HHHHHhh------------hhhhheeccCC-
Confidence 21 112223499999998764 66788999999999987531 111 1133444 77999999998
Q ss_pred CCCEEEEEECCCeEEEEEccCCE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
++..|++++.||.+.-||.++.-
T Consensus 235 ~p~~Lft~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDASTTF 257 (319)
T ss_pred CchheeEecCCCcEEEEcCCCce
Confidence 56669999999999999988643
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.11 E-value=0.006 Score=71.33 Aligned_cols=109 Identities=14% Similarity=0.190 Sum_probs=68.7
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCe----------EEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecc
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNI----------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~V----------t~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~ 157 (1107)
+..|+..+.++.|.-+|..+++.+......... ..-...-.+..+++++.+|.++. +|..+|++.-
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~a--ld~~tG~~~W-- 144 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYA--LNAEDGEVAW-- 144 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEE--EECCCCCCcc--
Confidence 467888888889999999999888766433210 00001113567888999997655 5555577653
Q ss_pred eeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeC
Q 001287 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g 217 (1107)
+.... ..+ .-.|.-.+.+++++..+|.+..+|..+++.++...
T Consensus 145 -~~~~~-------------~~~---~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 145 -QTKVA-------------GEA---LSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred -cccCC-------------Cce---ecCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 22211 111 11122123458888899999999999999887764
No 292
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.10 E-value=0.00039 Score=72.39 Aligned_cols=201 Identities=12% Similarity=0.150 Sum_probs=125.4
Q ss_pred CeEEEEEcCCCCEEEEEE------------CCCcEEEEeCCCccee----eeCCCCCCEEEEEEEe---CCC-EEEEEeC
Q 001287 37 TASILAFDHIQRLLAIAT------------LDGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQ---NQG-FLISITN 96 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs------------~dg~I~iw~~~~~~~~----~~~~h~~~V~~l~fs~---d~~-~L~S~s~ 96 (1107)
.+.|+.--+. +||+|+ ..|.+.+|++...+.. +...-...+-.+.|.. ++. .|+-+-.
T Consensus 16 ~~C~l~~~~~--vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a 93 (339)
T KOG0280|consen 16 PICCLCHTRN--VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHA 93 (339)
T ss_pred Cccccccccc--eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccc
Confidence 3444443333 777776 3477888887443221 2222334455555643 333 4566667
Q ss_pred CCcEEEEEcCCCeeeeeec-cC------CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccccc
Q 001287 97 DNEIQVWSLESRSLACCLK-WE------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 97 d~~I~vWDl~s~~~~~~~~-~~------~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
.|.|.++......-...+. .. ..-.++.|++.+..++++..+|.+.+.+... ..+.. ......|+
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~-vq~wk~He----- 165 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEK-VQTWKVHE----- 165 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecce--eeeee-cccccccc-----
Confidence 8889998876654333331 11 1245778888899999999999988555432 22222 12244444
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc-CCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1107)
-..-...|+-. +.+.+.+|+.||.+..||++ .+..++... +++
T Consensus 166 -------~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i~~n~--------kvH-------------------- 209 (339)
T KOG0280|consen 166 -------FEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFIWHNS--------KVH-------------------- 209 (339)
T ss_pred -------eeeeeeecccC-CCceEEecCCCceEEEEEecCCcceeeecc--------eee--------------------
Confidence 33445556444 45779999999999999998 333333210 111
Q ss_pred CCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 249 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 249 ~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
...|.|+.-..|++.+|++|+.|-.|++||..+..
T Consensus 210 ~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 210 TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred ecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 56688877556788899999999999999998653
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00016 Score=85.32 Aligned_cols=156 Identities=21% Similarity=0.278 Sum_probs=107.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCC-EEEEEEEeCCCEEEEEeCCCc-----EEEEEcCCC------
Q 001287 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITNDNE-----IQVWSLESR------ 108 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~L~S~s~d~~-----I~vWDl~s~------ 108 (1107)
-.+++.+..+|.|+.+|.|-+++.......-...++.. |..|....+..+|++.+.|.+ |+|||++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 34688899999999999999998776665555555555 666666666689999998654 999998654
Q ss_pred eee--eee-c-----cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 109 SLA--CCL-K-----WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 109 ~~~--~~~-~-----~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
+++ +.+ . .+.++++++++.+-+.+++|-.+|.|..+.=|..+.+-.+..|..++ ..+|+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-------------~~pIT 175 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-------------KEPIT 175 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-------------CCCce
Confidence 222 122 1 24689999999999999999999988776644322111111122222 27899
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCE
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
++.+ ..+++.++-+..-..|.+|.++...
T Consensus 176 gL~~--~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 176 GLAL--RSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred eeEE--ecCCceeEEEEecceeEEEEecCCC
Confidence 9999 4466654445555667888888544
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=0.0013 Score=74.00 Aligned_cols=114 Identities=7% Similarity=0.067 Sum_probs=78.8
Q ss_pred CEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcC-----------CCcEEEEEe
Q 001287 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-----------NGLMSVIKY 146 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~-----------dg~V~vw~~ 146 (1107)
.=+.+.|||.|.||+|.-..| |.+|--.+-..++.+.|++ |.-+.|+|..+||++=+. ...+.|||+
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 457899999999999998655 8899988877778887877 788999999999987642 357889987
Q ss_pred ecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
.+ |.+... |.+.... ...-.-+.|+. ++++++.-..+ .|.||+..+-
T Consensus 290 ~t--G~lkrs-F~~~~~~-----------~~~WP~frWS~--DdKy~Arm~~~-sisIyEtpsf 336 (698)
T KOG2314|consen 290 AT--GLLKRS-FPVIKSP-----------YLKWPIFRWSH--DDKYFARMTGN-SISIYETPSF 336 (698)
T ss_pred cc--cchhcc-eeccCCC-----------ccccceEEecc--CCceeEEeccc-eEEEEecCce
Confidence 75 555442 3332111 01123456643 78866666554 4577876553
No 295
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=98.06 E-value=6.7e-06 Score=73.19 Aligned_cols=49 Identities=35% Similarity=0.483 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhh
Q 001287 1052 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1100 (1107)
Q Consensus 1052 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 1100 (1107)
+.-..+..+-+++.||||||+.|++||++|+.+|+.|.+-|++|-++|.
T Consensus 14 ~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 14 EVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999999999999999999998873
No 296
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=5.4e-06 Score=74.04 Aligned_cols=51 Identities=31% Similarity=0.681 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001287 1052 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1106 (1107)
Q Consensus 1052 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~~~~~ 1106 (1107)
++.+.+..+=+|..||||||..|++||+.|+++|..|-.-|..|.+|| ||+
T Consensus 40 eVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~----wWk 90 (116)
T KOG0860|consen 40 EVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM----WWK 90 (116)
T ss_pred HHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 456889999999999999999999999999999999999999887764 885
No 297
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.00 E-value=0.014 Score=60.17 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=73.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccc
Q 001287 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1107)
.+++.+|..+.+.--|..+|.+........+|.+-+.- -++++++|+.+|.+++.++.+ |...+. +.+-+.-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t--Gs~~w~-f~~~~~v---- 95 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT--GSQIWN-FVILETV---- 95 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecc--hhheee-eeehhhh----
Confidence 45666777888888888888887777666666665554 577899999999988877764 544432 2222110
Q ss_pred cCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEE
Q 001287 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1107)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~ 215 (1107)
..--.+.| ++..+.+++.|++....|..+...+..
T Consensus 96 --------k~~a~~d~----~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 96 --------KVRAQCDF----DGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred --------ccceEEcC----CCceEEEecCCCcEEEecccccceEEe
Confidence 00111222 566799999999999999998877654
No 298
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.00047 Score=77.85 Aligned_cols=194 Identities=12% Similarity=0.214 Sum_probs=122.7
Q ss_pred CCCeEEEEEcCCC--CEEEE-----EECCCcEEEEeCCCcceeeeCC----CCCCEEEEEEEeCCC-EEEEEe--CCC--
Q 001287 35 PATASILAFDHIQ--RLLAI-----ATLDGRIKVIGGDGIEGLLISP----SQLPYKNLEFLQNQG-FLISIT--NDN-- 98 (1107)
Q Consensus 35 ~~~i~~lafsp~~--~~LA~-----Gs~dg~I~iw~~~~~~~~~~~~----h~~~V~~l~fs~d~~-~L~S~s--~d~-- 98 (1107)
...|+.+++||.. ..||+ ++.-+.|+||........-... ....=..+.|.+-|. .|+-++ -|.
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 5668889999863 46666 3344789999886221110000 111222344544332 222222 243
Q ss_pred -------cEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEc--CCCcEEEEEeecCCCceeecceeeccccccccc
Q 001287 99 -------EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 99 -------~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~--~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
++.+.+++.....-.+.-.++|.++.|++.+.-+++.. ---.+.|++++ +.++ |.++.
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr---~~~v---~df~e------- 311 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR---GKPV---FDFPE------- 311 (566)
T ss_pred ccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC---CCEe---EeCCC-------
Confidence 58888888556666667789999999999997666553 44567777766 4554 44553
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEE-EC--CCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIA-YE--NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~-~~--dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1107)
++=.++-|+| .|++++.+ +. .|.|-|||+.+.+.+.....
T Consensus 312 -------gpRN~~~fnp--~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---------------------------- 354 (566)
T KOG2315|consen 312 -------GPRNTAFFNP--HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---------------------------- 354 (566)
T ss_pred -------CCccceEECC--CCCEEEEeecCCCCCceEEEeccchhhcccccc----------------------------
Confidence 5678889998 56665554 44 37999999999766543321
Q ss_pred CCCCceeEEEeecCCCCEEEEEEc------CCcEEEEeCCCC
Q 001287 247 PEEKEISALCWASSSGSILAVGYI------DGDILLWNTSTT 282 (1107)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~------dG~I~lWd~~~~ 282 (1107)
..-+-..|. |||++|+|+.. |+.++||+....
T Consensus 355 ---~~tt~~eW~-PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 ---ANTTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ---CCceEEEEc-CCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 112234585 99999999865 678999998643
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=2.3e-05 Score=86.80 Aligned_cols=177 Identities=10% Similarity=0.074 Sum_probs=117.9
Q ss_pred CCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceE
Q 001287 481 GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLV 560 (1107)
Q Consensus 481 g~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V 560 (1107)
||.+.+-.++.-.+.+-+++++.|.+|++|.+....-. .++...+.+...|..+|..+.|-.+.+++++ .||-+
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~----~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE----IGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc----cccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 44444444445567778999999999999987633211 1111222556789999999999999988875 48899
Q ss_pred EEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCC--CCEE-EEEeCCCeEEEEEcCCCeE
Q 001287 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS--GAKL-AVGFECGRVAVLDMNLLSV 637 (1107)
Q Consensus 561 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~--~~~l-a~Gs~dg~V~iwd~~~~~~ 637 (1107)
.+||--...-- . -.......+.++.+.+-++ ..++ |.++...+|+++|.+.+..
T Consensus 807 HlWDPFigr~L----------------a-------q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 807 HLWDPFIGRLL----------------A-------QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW 863 (1034)
T ss_pred eeecccccchh----------------H-------hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc
Confidence 99986443110 0 0011112334444444443 3333 4447889999999998876
Q ss_pred EEEeec--CCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 638 LFFTDD--ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 638 ~~~~~~--~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
....+. .++...-+.+++.. +.++.|+++-..|.|.++|..+|.+|++-
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa----------------------~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVA----------------------DKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred eeeEEeccCCCCchheeEEEec----------------------cCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 544433 34555667777766 45888999999999999999999999753
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=2.8e-05 Score=82.15 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=112.8
Q ss_pred ecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCc
Q 001287 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETK 581 (1107)
Q Consensus 502 s~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~ 581 (1107)
+.+-.|-+-|+.++.-+ .+ .....|-++.|...+.++..|.++|.|..+|+.....
T Consensus 231 G~sqqv~L~nvetg~~q------------sf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----------- 286 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQQ------------SF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----------- 286 (425)
T ss_pred cccceeEEEEeeccccc------------cc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-----------
Confidence 44455666666666533 12 2445788999999999999999999999999987621
Q ss_pred CcceecccCCcceeEEEEeecCcCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecc
Q 001287 582 SEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFK 660 (1107)
Q Consensus 582 ~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp-~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~ 660 (1107)
+.++... .-.|.+.||+|..-. ++++|.+.+.+|.|++||.+--+.-..+..+.||... .++.+..
T Consensus 287 --------G~~~~a~--rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~---~a~l~~~ 353 (425)
T KOG2695|consen 287 --------GNGWCAQ--RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL---SAYLPAH 353 (425)
T ss_pred --------CCCcceE--EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc---ccccccc
Confidence 3333222 247999999999877 7889999999999999999865552233566666443 3333332
Q ss_pred cCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCC
Q 001287 661 NTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSP 709 (1107)
Q Consensus 661 ~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~ 709 (1107)
.. +++..+++++.|.-.++|...+|.++++.+
T Consensus 354 v~-----------------~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 354 VK-----------------EEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred cc-----------------cccceEEEccCeeEEEEEecccCceeeccC
Confidence 22 567889999999999999999999998874
No 301
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00013 Score=84.41 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=100.8
Q ss_pred CCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEE
Q 001287 484 SPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIY 563 (1107)
Q Consensus 484 ~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw 563 (1107)
..+...++....++++.|+.-|.+.+++-.++..+. ....+-...+..+..+++..+.|.|+..|.|.||
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~----------~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK----------LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhc----------ccccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence 334445778888999999999999999988877551 1122334566777889999999999999999999
Q ss_pred EecCCCCCccceeeccCcCcceecccCCcceeEE-EE-eecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CeEEEE
Q 001287 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRA-VF-SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL-LSVLFF 640 (1107)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~-~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~-~~~~~~ 640 (1107)
.+..... +.+.+. .+ ..|...|||++|++++..+.+|...|.|....+.. ...+..
T Consensus 104 ql~~~~p---------------------~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~ 162 (726)
T KOG3621|consen 104 QLNKELP---------------------RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSK 162 (726)
T ss_pred hhhccCC---------------------CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccc
Confidence 9877411 111111 11 23789999999999999999999999999887776 222222
Q ss_pred eecCCCCCCceEEEEEe
Q 001287 641 TDDISGSSSPIISMTWT 657 (1107)
Q Consensus 641 ~~~~~~h~~~V~~l~fs 657 (1107)
.+.+-.-.++|..|.+.
T Consensus 163 ~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 163 SQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccCcceEEeecc
Confidence 23333345666666555
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.93 E-value=2.7e-05 Score=79.27 Aligned_cols=157 Identities=16% Similarity=0.178 Sum_probs=99.8
Q ss_pred CccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEecc-----CceEE
Q 001287 487 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE-----FGLVY 561 (1107)
Q Consensus 487 ~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~-----dg~V~ 561 (1107)
+.-+.+-.+.-+++|+.||.+-+.+... .++ +..++. ..| ..--+..++..++++.++.- -+..+
T Consensus 93 p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~----~~~~i~----~~~-~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 93 PNDACTMTDNRVCIGYADGSLAVFSTDK-DLA----LMSRIP----SIH-SGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred CcccccccCCceEecCCCceEEEEechH-HHh----hhhhcc----ccc-ccccccceeecccEEecCCcceEeecccee
Confidence 3335666777899999999999998775 322 110000 011 11123344555555543321 12334
Q ss_pred EEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 001287 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFF 640 (1107)
Q Consensus 562 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp-~~~~la~Gs~dg~V~iwd~~~~~~~~~ 640 (1107)
.|+++..... .....--..|++++-+| ..+++++|++||.|-+||.+.....
T Consensus 163 a~~~~p~~t~-------------------------~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p-- 215 (319)
T KOG4714|consen 163 ANTLDPIKTL-------------------------IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP-- 215 (319)
T ss_pred eecccccccc-------------------------cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccch--
Confidence 4444433111 00011122399999998 4568899999999999999987443
Q ss_pred eecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 641 TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 641 ~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
...+..|..+|..+.|.+.+. .-|+++++||++..||.++
T Consensus 216 ~S~l~ahk~~i~eV~FHpk~p---------------------~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 VSLLKAHKAEIWEVHFHPKNP---------------------EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHHHHHhhhhhhheeccCCCc---------------------hheeEecCCCcEEEEcCCC
Confidence 456778999999999996532 3499999999999999875
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.92 E-value=0.018 Score=67.36 Aligned_cols=173 Identities=11% Similarity=0.115 Sum_probs=100.0
Q ss_pred cccceeeeecCCCCCeE------EEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCC-----------CE-EEEEE
Q 001287 23 DLNLRIAVHYGIPATAS------ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL-----------PY-KNLEF 84 (1107)
Q Consensus 23 ~~~~~~~~~~G~~~~i~------~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~-----------~V-~~l~f 84 (1107)
.+.++...+..+...+. ..++ .+..+.+++.+|.|.-+|....+.+-...-.. .+ ..+..
T Consensus 41 ~~~~~~~W~~~~g~g~~~~~~~~sPvv--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v 118 (394)
T PRK11138 41 QFTPTTVWSTSVGDGVGDYYSRLHPAV--AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV 118 (394)
T ss_pred cCCcceeeEEEcCCCCccceeeeccEE--ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE
Confidence 34555565654444432 1122 35677788888988888886555543222111 00 01111
Q ss_pred EeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccc
Q 001287 85 LQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA 164 (1107)
Q Consensus 85 s~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~ 164 (1107)
++..++.++.++.|..+|.++++.+......+.+.+--.. .+..++++..+|.+ +-+|..+|+.. ++.+...
T Consensus 119 --~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l--~ald~~tG~~~---W~~~~~~ 190 (394)
T PRK11138 119 --AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGML--QALNESDGAVK---WTVNLDV 190 (394)
T ss_pred --ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEE--EEEEccCCCEe---eeecCCC
Confidence 3467888888999999999999998877655544322111 24578888888865 55556567766 3333211
Q ss_pred cccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 165 ~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
... .. ....+|.-.+..++++..+|.+..+|..+++..+..
T Consensus 191 --~~~--------~~-~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 191 --PSL--------TL-RGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred --Ccc--------cc-cCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhee
Confidence 000 00 000122112234888889999999999998876653
No 304
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=9.7e-05 Score=85.43 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=90.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCC--CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee-
Q 001287 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP--SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL- 110 (1107)
Q Consensus 34 ~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~--h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~- 110 (1107)
++..+.--+++...++||+|+.-|.+++|+..+.+...... ..+.+..+..+++..+++.+++.+.|.|+-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34456667788899999999999999999997766554443 455667777888877778888888888888877532
Q ss_pred ----eeee--ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 111 ----ACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 111 ----~~~~--~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
++.. .|...|||++|++++..+++|+..|.|....++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2222 3678999999999999999999999998888875
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.87 E-value=0.045 Score=67.92 Aligned_cols=213 Identities=14% Similarity=0.170 Sum_probs=127.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCc--EEEEeCCCc-c------eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 37 TASILAFDHIQRLLAIATLDGR--IKVIGGDGI-E------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~--I~iw~~~~~-~------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
..-++.++|.....|+++..+. +.+|..... . ....-...+.|.++.|..++..++.+..+|.|.+-|.++
T Consensus 20 ~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et 99 (1265)
T KOG1920|consen 20 NAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDPET 99 (1265)
T ss_pred chhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEcccc
Confidence 4456666776666666633221 233332111 1 011122345899999999999999999999999999988
Q ss_pred CeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecC---CCce----------eecce-----eecccc-cccc
Q 001287 108 RSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD---EGKL----------FQLPY-----NISADA-LSEK 168 (1107)
Q Consensus 108 ~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~---~~~l----------~~~~~-----~i~~~~-~~~~ 168 (1107)
......-.-...|.+++|+|+.++++..+..+++.+...+-+ ...+ +...| .+.+.. ++..
T Consensus 100 ~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~ 179 (1265)
T KOG1920|consen 100 LELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAA 179 (1265)
T ss_pred cceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcc
Confidence 876555566788999999999999999999998877665321 0011 10000 011000 0000
Q ss_pred cC--CCC---C---CCCCeEEEEcccCCCCCEEEEEE----CC-CeEEEEEccCCEEEEEeCCccccccccccCCCCCCC
Q 001287 169 AG--FPL---L---SHQPVVGVLPHPNSSGNRVLIAY----EN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1107)
Q Consensus 169 ~~--~~~---~---~~~~V~~v~f~P~~~~~~ll~~~----~d-g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 235 (1107)
.. ... . -.+.=++|.| ..+|.++++.+ .+ ..|+|||-+ +.+-.....
T Consensus 180 ~~~~~~ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~----------------- 239 (1265)
T KOG1920|consen 180 RQKIEKEKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP----------------- 239 (1265)
T ss_pred cccccccccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc-----------------
Confidence 00 000 0 1122356889 67898777733 23 689999977 332211100
Q ss_pred CccccCCCCCCCCCCceeEEEeecCCCCEEEEEE---cCCcEEEEeCCCC
Q 001287 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGY---IDGDILLWNTSTT 282 (1107)
Q Consensus 236 ~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~---~dG~I~lWd~~~~ 282 (1107)
..+.-.++.|- |.|..+++-. +|++|.++..+..
T Consensus 240 ------------~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 240 ------------VEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ------------ccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCc
Confidence 03344679997 8999988874 4667999887654
No 306
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=3.1e-05 Score=85.74 Aligned_cols=210 Identities=15% Similarity=0.199 Sum_probs=139.4
Q ss_pred cceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--c------ceeeeCCCCCCEEEEEEEeCCCEEEEEeC
Q 001287 25 NLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG--I------EGLLISPSQLPYKNLEFLQNQGFLISITN 96 (1107)
Q Consensus 25 ~~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~--~------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~ 96 (1107)
.+|+....||...|.+++-=.+..-.++++.|.+|++|.+.. . ...+-..|+.+|..+.|..+-++++|+
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence 356777789999999876555566667999999999998721 1 223566799999999999997777776
Q ss_pred CCcEEEEEcCCCeeeeeec---cC---CCeEEEEEecCCCEEEEE-cCCCcEEEEEeecCCCceeecceeeccccccccc
Q 001287 97 DNEIQVWSLESRSLACCLK---WE---SNITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 97 d~~I~vWDl~s~~~~~~~~---~~---~~Vt~l~~~~~~~~l~~g-~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
|+-|.+||---++++..+. .. +.|.|+- +-+...+..| +...+|+++|-.. +...- .+++-+.
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRs--ce~~~-E~kVcna------ 872 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARS--CEWTC-ELKVCNA------ 872 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeeccc--cccee-eEEeccC------
Confidence 7889999988887776442 12 3344432 1234445555 5667787766443 22221 1222110
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1107)
.....-+.+++..| .|+.++.+-++|.|.+.|.++++++...... +
T Consensus 873 ---~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpm-----------------------------e 918 (1034)
T KOG4190|consen 873 ---PGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPM-----------------------------E 918 (1034)
T ss_pred ---CCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcc-----------------------------c
Confidence 11125578888866 6888999999999999999999987543221 0
Q ss_pred CceeEEEeecCCCCEEEEEEcCCcEEE-EeCCCC
Q 001287 250 KEISALCWASSSGSILAVGYIDGDILL-WNTSTT 282 (1107)
Q Consensus 250 ~~Vtsl~w~spdg~~l~sg~~dG~I~l-Wd~~~~ 282 (1107)
-....++ .|..+.++....|.++.+ |...++
T Consensus 919 cdllqla--apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 919 CDLLQLA--APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred chhhhhc--CchhHHHHhhcccceeEeeehhcCC
Confidence 1111122 367778888888888888 876544
No 307
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00034 Score=72.76 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCc---ceeeeCCCCCCEEEEEEEeCC-CEEEEEeCCCcEEEEEcC-CCeee-
Q 001287 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLE-SRSLA- 111 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I~vWDl~-s~~~~- 111 (1107)
.-++.|++.+.-++++-.+|.+.+-+.... .+....+|+.+.--..|+... ..+.+++.|+.+..||++ .+..+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 346788899999999999999984443222 223667899999999998643 578999999999999998 33333
Q ss_pred -eeeccCCCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC
Q 001287 112 -CCLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 112 -~~~~~~~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
....|...|.++.-+|. ..++++|+-|-.|++||...-. +.. +++. ..+.|-.+.++|...
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-kPl-----~~~~-----------v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-KPL-----FKAK-----------VGGGVWRIKHHPEIF 266 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-Ccc-----ccCc-----------cccceEEEEecchhh
Confidence 24467788999888755 5699999999999999965321 111 1111 117799999999855
Q ss_pred CCEEEEEECCCeEEEEEccCC
Q 001287 190 GNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 190 ~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
+. |+.++...-.+|-+.+.+
T Consensus 267 ~~-lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 267 HR-LLAACMHNGAKILDSSDK 286 (339)
T ss_pred hH-HHHHHHhcCceEEEeccc
Confidence 54 555555554577776654
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.79 E-value=0.0024 Score=73.40 Aligned_cols=107 Identities=16% Similarity=0.354 Sum_probs=72.5
Q ss_pred CCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
..|.+.+++|. .++|+.|+.||.|++||...+...... . .-..+.++
T Consensus 260 s~v~~ca~sp~--E~kLvlGC~DgSiiLyD~~~~~t~~~k-a------------------------------~~~P~~ia 306 (545)
T PF11768_consen 260 SQVICCARSPS--EDKLVLGCEDGSIILYDTTRGVTLLAK-A------------------------------EFIPTLIA 306 (545)
T ss_pred CcceEEecCcc--cceEEEEecCCeEEEEEcCCCeeeeee-e------------------------------cccceEEE
Confidence 67999999994 566999999999999998877443321 1 33467799
Q ss_pred eecCCCCEEEEEEcCCcEEEEeCCCCCCCCCccCCCCCceeeeeccccc-CccceEEEEeec
Q 001287 257 WASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE-RRLPVIVLHWST 317 (1107)
Q Consensus 257 w~spdg~~l~sg~~dG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~i~~~~w~~ 317 (1107)
|+ |+|..+++|+..|.|.+||+.-.............|...+++..-. ....+..++|..
T Consensus 307 WH-p~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~ 367 (545)
T PF11768_consen 307 WH-PDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAP 367 (545)
T ss_pred Ec-CCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEecc
Confidence 98 9999999999999999999875432222222333333334433221 223445667763
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0021 Score=69.90 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=64.7
Q ss_pred CCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 177 ~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
..|..++|+|...| ++..++.+..|.|.|+.+..++..+.. ...+.++|
T Consensus 194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a------------------------------~~~~wSC~ 242 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIA------------------------------YNQIWSCC 242 (463)
T ss_pred hhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheec------------------------------cCCceeee
Confidence 56999999997666 488899999999999999887765432 56899999
Q ss_pred eecCCCCEEEEEEcCCcEEEEeCCCCCCC
Q 001287 257 WASSSGSILAVGYIDGDILLWNTSTTAST 285 (1107)
Q Consensus 257 w~spdg~~l~sg~~dG~I~lWd~~~~~~~ 285 (1107)
|.-.+..+|++|..+|.|.+||+...+.+
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCCch
Confidence 98666788999999999999999876543
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.70 E-value=8.2e-05 Score=54.66 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=33.2
Q ss_pred eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 001287 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWD 104 (1107)
.....+|..+|.+|+|+|++.+|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 345678999999999999999999999999999998
No 311
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.70 E-value=0.0046 Score=70.08 Aligned_cols=144 Identities=16% Similarity=0.235 Sum_probs=98.6
Q ss_pred CCEEEEEEC---------C-CcEEEEeCCCc-----c--eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 47 QRLLAIATL---------D-GRIKVIGGDGI-----E--GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 47 ~~~LA~Gs~---------d-g~I~iw~~~~~-----~--~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
..+|++|+. . |+|.+|..... + .+.....+++|.+|+-. + ++|+.+ .++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~-~~lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-N-GRLVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-T-TEEEEE-ETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-C-CEEEEe-ecCEEEEEEccCcc
Confidence 689999985 2 99999998663 2 23345568899999877 3 344443 36899999998888
Q ss_pred -eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 110 -LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 110 -~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
+.....+...+...+....++++++|+....+.++.|+.+..++........ ..+++++.|-+.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~--------------~~~v~~~~~l~d- 183 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQ--------------PRWVTAAEFLVD- 183 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS---------------BEEEEEEEE-S-
T ss_pred cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCC--------------CccEEEEEEecC-
Confidence 6655555444444444555779999999999999999875544554211111 145888888653
Q ss_pred CCCEEEEEECCCeEEEEEccC
Q 001287 189 SGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
++.++++..+|.+.++....
T Consensus 184 -~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 184 -EDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSEEEEEETTSEEEEEEE-S
T ss_pred -CcEEEEEcCCCeEEEEEECC
Confidence 34799999999999988763
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.70 E-value=0.0048 Score=66.46 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=114.2
Q ss_pred CCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccC----CC
Q 001287 45 HIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWE----SN 119 (1107)
Q Consensus 45 p~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~----~~ 119 (1107)
+++..|.+++.++.|+.||....+.+-...-..++.... ..++..++.++.++.|..+|..+++.+... ... ..
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 356777788999999999986555553333233332222 334467777778899999999999998773 221 11
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECC
Q 001287 120 ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1107)
Q Consensus 120 Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~d 199 (1107)
.........++.++++..+|.|.. ++..+|++.-. +.+........+. .-......+.+. ++ .++++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~--~d~~tG~~~w~-~~~~~~~~~~~~~---~~~~~~~~~~~~---~~-~v~~~~~~ 182 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVA--LDPKTGKLLWK-YPVGEPRGSSPIS---SFSDINGSPVIS---DG-RVYVSSGD 182 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEE--EETTTTEEEEE-EESSTT-SS--EE---EETTEEEEEECC---TT-EEEEECCT
T ss_pred ccccCceEecCEEEEEeccCcEEE--EecCCCcEEEE-eecCCCCCCccee---eecccccceEEE---CC-EEEEEcCC
Confidence 222333334888899988886655 44556777532 2221100000000 000011233331 34 68888888
Q ss_pred Ce-EEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEe
Q 001287 200 AL-VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1107)
Q Consensus 200 g~-V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd 278 (1107)
+. +.+ |+.+++..+..- ...+..+. ..++..|++++.+|.|..||
T Consensus 183 g~~~~~-d~~tg~~~w~~~-------------------------------~~~~~~~~--~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSKP-------------------------------ISGIYSLP--SVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SSEEEE-ETTTTEEEEEEC-------------------------------SS-ECECE--ECCCTEEEEEETTTEEEEEE
T ss_pred CeEEEE-ECCCCCEEEEec-------------------------------CCCccCCc--eeeCCEEEEEeCCCEEEEEE
Confidence 85 555 999998665221 11122222 26778888888999999999
Q ss_pred CCCCC
Q 001287 279 TSTTA 283 (1107)
Q Consensus 279 ~~~~~ 283 (1107)
..+++
T Consensus 229 ~~tG~ 233 (238)
T PF13360_consen 229 LKTGK 233 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 98873
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0025 Score=69.23 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=70.9
Q ss_pred eeCCCCCCEEEEEEEeCC-CEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeec
Q 001287 71 LISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~-~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~ 148 (1107)
++..|..-|+.|+|||.. +.|..++-++.|+|.|+++...+..+.....+++++|+-+. .+++.|..+|.|.|+|+..
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 455677789999999964 47888999999999999999999888777999999999665 6899999999999999876
Q ss_pred CCCcee
Q 001287 149 DEGKLF 154 (1107)
Q Consensus 149 ~~~~l~ 154 (1107)
.++.+.
T Consensus 268 ~~~~~~ 273 (463)
T KOG1645|consen 268 PEGPLM 273 (463)
T ss_pred CCchHh
Confidence 554443
No 314
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.68 E-value=0.0024 Score=65.74 Aligned_cols=154 Identities=10% Similarity=-0.028 Sum_probs=105.3
Q ss_pred EEEEEECCCcEEEEeCCCcceeeeCCCC-CCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-ee-eeee--ccCCCeEEE
Q 001287 49 LLAIATLDGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SL-ACCL--KWESNITAF 123 (1107)
Q Consensus 49 ~LA~Gs~dg~I~iw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-~~-~~~~--~~~~~Vt~l 123 (1107)
-+-.++.|.++++++++.........-. -.+.++.+++|+.++++++..+.|..+.++.. ++ +... .....-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 3556777888888777554332222111 35889999999999999999999999998654 22 2212 334456788
Q ss_pred EEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEE
Q 001287 124 SVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1107)
Q Consensus 124 ~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~ 203 (1107)
+|+.....+|++.+||++.|||+.... ++.. .... .-..+.+++..+.|+|-..-++|+..-.-+.+.
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~-tpm~----~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMA-TPMA----EISS-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccc-cchh----hhcc-------cCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 899999999999999999999987532 1111 1000 011234899999999855555566666667888
Q ss_pred EEEccCCEEEE
Q 001287 204 LWDVSEAQIIF 214 (1107)
Q Consensus 204 vwdl~~~~~~~ 214 (1107)
|-|+++.+-.+
T Consensus 278 v~D~R~~~~~q 288 (344)
T KOG4532|consen 278 VVDTRNYVNHQ 288 (344)
T ss_pred EEEcccCceee
Confidence 99998875433
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.65 E-value=0.0038 Score=65.53 Aligned_cols=189 Identities=12% Similarity=0.044 Sum_probs=118.3
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCC------CeEEEeccCceEEEE
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN------SSLAVGNEFGLVYIY 563 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~------~~Lasg~~dg~V~vw 563 (1107)
+++||+.+||-+...|+|+++|+.+..+- .+++.... ...-..+|..|.|.... ..|++-+.+|.++=|
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~lf---~I~p~~~~--~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMGSELF---VIPPAMSF--PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEecccceeE---EcCccccc--CCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 78999999999999999999999876543 33332111 11223578888887642 257778889999988
Q ss_pred EecCCCCCccceeeccCcCcceecccCCcceeEEEEee---cCcCEEEEEEcCCCCEEEEEeCC-C----------eEEE
Q 001287 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL---VNSPVRALQFTSSGAKLAVGFEC-G----------RVAV 629 (1107)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---h~~~Vt~la~sp~~~~la~Gs~d-g----------~V~i 629 (1107)
.++..+. .+++....|.. +...|+++.++|..++|.+|+.. . -+.-
T Consensus 125 ~vs~gt~--------------------q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLta 184 (282)
T PF15492_consen 125 LVSVGTN--------------------QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTA 184 (282)
T ss_pred EEEcccC--------------------CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceE
Confidence 8754321 12223333333 57899999999999998887632 1 1566
Q ss_pred EEcCCCeEEEEeecCCCCCCceE----EEEEeecccC--ccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcc
Q 001287 630 LDMNLLSVLFFTDDISGSSSPII----SMTWTEFKNT--HSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1107)
Q Consensus 630 wd~~~~~~~~~~~~~~~h~~~V~----~l~fs~~~~~--~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~ 703 (1107)
|.+-+...-+..-. .....+. ...|.+...- -+......+...+++..|++.+|++..-+|.|.+|+.-+-.
T Consensus 185 WRiL~~~Pyyk~v~--~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 185 WRILSDSPYYKQVT--SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEEcCCCCcEEEcc--ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 76655544332111 1222221 1112111000 01123445566777888999999999999999999986644
Q ss_pred ee
Q 001287 704 MI 705 (1107)
Q Consensus 704 ~i 705 (1107)
++
T Consensus 263 ~~ 264 (282)
T PF15492_consen 263 LQ 264 (282)
T ss_pred hh
Confidence 43
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.59 E-value=0.0016 Score=68.01 Aligned_cols=96 Identities=15% Similarity=0.238 Sum_probs=58.9
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEE
Q 001287 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1107)
Q Consensus 117 ~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~ 196 (1107)
...|+++.|...|.||++|+..|.|-++.-....++-.+---.+.+|+..=.+.-+..-...|..|.|--......++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 35799999999999999999999776655443222211100012333321001111111245788888543355569999
Q ss_pred ECCCeEEEEEccCCEE
Q 001287 197 YENALVILWDVSEAQI 212 (1107)
Q Consensus 197 ~~dg~V~vwdl~~~~~ 212 (1107)
..|.+|++|-+....+
T Consensus 106 tNdktiKlWKiyeknl 121 (460)
T COG5170 106 TNDKTIKLWKIYEKNL 121 (460)
T ss_pred cCCceeeeeeeecccc
Confidence 9999999999877644
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.58 E-value=0.047 Score=59.13 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=112.7
Q ss_pred eEEEEEc-CCCCEEEEEECCCcEEEEeCCCccee--eeC---C-CCCCEEEEEEEeCCCEEEEEeCC--------CcEEE
Q 001287 38 ASILAFD-HIQRLLAIATLDGRIKVIGGDGIEGL--LIS---P-SQLPYKNLEFLQNQGFLISITND--------NEIQV 102 (1107)
Q Consensus 38 i~~lafs-p~~~~LA~Gs~dg~I~iw~~~~~~~~--~~~---~-h~~~V~~l~fs~d~~~L~S~s~d--------~~I~v 102 (1107)
...++++ ++ ..|.++..++ +.+++....+.. ... . .......+++.++|.+.++.... +.|..
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677888 66 4455555544 566687654433 221 1 33468899999998877776643 44777
Q ss_pred EEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecc--eeecccccccccCCCCCCCCCe
Q 001287 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLP--YNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 103 WDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
++.. ++.......-.....++|+++++.|++.. ..+.|+.++++.....+.... +.++... +..
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------------g~p 186 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP------------GYP 186 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS------------CEE
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC------------cCC
Confidence 7777 55444444445678999999999888665 456555555554444232110 1122111 347
Q ss_pred EEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec
Q 001287 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1107)
-.+++.. +|++.++.+..+.|.++|.+ ++++..... . ...++++||..
T Consensus 187 DG~~vD~--~G~l~va~~~~~~I~~~~p~-G~~~~~i~~---------p--------------------~~~~t~~~fgg 234 (246)
T PF08450_consen 187 DGLAVDS--DGNLWVADWGGGRIVVFDPD-GKLLREIEL---------P--------------------VPRPTNCAFGG 234 (246)
T ss_dssp EEEEEBT--TS-EEEEEETTTEEEEEETT-SCEEEEEE----------S--------------------SSSEEEEEEES
T ss_pred CcceEcC--CCCEEEEEcCCCEEEEECCC-ccEEEEEcC---------C--------------------CCCEEEEEEEC
Confidence 7888854 78877777789999999988 554433211 0 34789999866
Q ss_pred CCCCEEEEEE
Q 001287 260 SSGSILAVGY 269 (1107)
Q Consensus 260 pdg~~l~sg~ 269 (1107)
++.+.|+..+
T Consensus 235 ~~~~~L~vTt 244 (246)
T PF08450_consen 235 PDGKTLYVTT 244 (246)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 7877776544
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.00037 Score=73.96 Aligned_cols=146 Identities=14% Similarity=0.199 Sum_probs=102.1
Q ss_pred CCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-----eeeeeeccCCCeEEEEEec-C
Q 001287 55 LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-----SLACCLKWESNITAFSVIS-G 128 (1107)
Q Consensus 55 ~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-----~~~~~~~~~~~Vt~l~~~~-~ 128 (1107)
.+-.|-|-++.+.....+. ..+.|-+++|...+..|+.++.+|.|.+.|++.+ ...+.+.|++.||++..-. +
T Consensus 232 ~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s 310 (425)
T KOG2695|consen 232 LSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFS 310 (425)
T ss_pred ccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccc
Confidence 3555666666433222111 4567999999998899999999999999999876 4567788999999999887 7
Q ss_pred CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccC-CCCCEEEEEECCCeEEEEEc
Q 001287 129 SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN-SSGNRVLIAYENALVILWDV 207 (1107)
Q Consensus 129 ~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~-~~~~~ll~~~~dg~V~vwdl 207 (1107)
.++|.+.+-+|.|++||+.....+...+ ...+|. ..-.-+.++-. .+| .+++++.|...+||.+
T Consensus 311 ~q~LmaS~M~gkikLyD~R~~K~~~~V~--qYeGHv------------N~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 311 QQKLMASDMTGKIKLYDLRATKCKKSVM--QYEGHV------------NLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSL 375 (425)
T ss_pred cceEeeccCcCceeEeeehhhhccccee--eeeccc------------ccccccccccccccc-eEEEccCeeEEEEEec
Confidence 8899999999999999987643322211 134442 11111111111 144 4888999999999999
Q ss_pred cCCEEEEEe
Q 001287 208 SEAQIIFVG 216 (1107)
Q Consensus 208 ~~~~~~~~~ 216 (1107)
+.+.+....
T Consensus 376 ~~ghLl~ti 384 (425)
T KOG2695|consen 376 DSGHLLCTI 384 (425)
T ss_pred ccCceeecc
Confidence 999877544
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00078 Score=73.91 Aligned_cols=215 Identities=13% Similarity=0.112 Sum_probs=139.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee----eeCCCCCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCC
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLES 107 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~----~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s 107 (1107)
=|...|+-+..+ ...++.+++.||.++.|.....+.+ ....|-+.|.+|+.+.++..+.|++. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 344455555443 4689999999999999998664443 23347788999999999988899888 99999999988
Q ss_pred Ceeeeee---ccCCCeEEEEEecCC-CEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEE
Q 001287 108 RSLACCL---KWESNITAFSVISGS-HFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 108 ~~~~~~~---~~~~~Vt~l~~~~~~-~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
-....-+ -.++.+.++.-..+- ..++++. .+|.+.|+|--. ...+..|.-.-| ..+|.++
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~---d~~q~~~fkklH------------~sPV~~i 150 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFG---DFCQDGYFKKLH------------FSPVKKI 150 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcC---CcCccceecccc------------cCceEEE
Confidence 7655433 334433333211111 2555555 467776655321 222211222222 3889999
Q ss_pred EcccCCCCCEEEEEECCCeEEEEEccC------CEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEE
Q 001287 183 LPHPNSSGNRVLIAYENALVILWDVSE------AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1107)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg~V~vwdl~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~ 256 (1107)
.+.|. ++-+++....|.|.-|.... .++.+-..|...-+. -.......++++
T Consensus 151 ~y~qa--~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~--------------------f~K~Kt~pts~E 208 (558)
T KOG0882|consen 151 RYNQA--GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYG--------------------FPKAKTEPTSFE 208 (558)
T ss_pred Eeecc--ccceeeccccceeEeecCCCcccCccccccccccccchhhc--------------------ccccccCccceE
Confidence 99885 55588888899999999884 112211111000000 001145677899
Q ss_pred eecCCCCEEEEEEcCCcEEEEeCCCCCCCC
Q 001287 257 WASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1107)
Q Consensus 257 w~spdg~~l~sg~~dG~I~lWd~~~~~~~~ 286 (1107)
+ +|+|..+.+-..|..|++++..++...+
T Consensus 209 f-sp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 209 F-SPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred E-ccccCcccccCcccEEEEEEeccchhhh
Confidence 6 4999999999999999999999886443
No 320
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.50 E-value=0.00055 Score=79.11 Aligned_cols=123 Identities=14% Similarity=0.174 Sum_probs=94.1
Q ss_pred eeeeecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCcc--eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 27 RIAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 27 ~~~~~~G~~~~i~~lafsp~~-~~LA~Gs~dg~I~iw~~~~~~--~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
-....+||...|+.+.|.|.. .+||+++.|-.+..||..... +.....-...-+.+.|+...+.++..+..+.|.||
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 345678999999999999976 489999999999999985432 22333334456778888766777777888999999
Q ss_pred EcCCC-eeeeee-ccCCCeEEEEEecCC-CEEEEEcCCCcEEEEEeecC
Q 001287 104 SLESR-SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDAD 149 (1107)
Q Consensus 104 Dl~s~-~~~~~~-~~~~~Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~ 149 (1107)
|...+ ..++.+ .+...|..+.|..-. ..+.+.+.||+|+.|+++..
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 99887 455555 566777777776433 46778889999999999864
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0062 Score=71.70 Aligned_cols=112 Identities=14% Similarity=0.174 Sum_probs=79.9
Q ss_pred eEEEEEecCCCEEEEEc----CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEE
Q 001287 120 ITAFSVISGSHFMYIGD----ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1107)
Q Consensus 120 Vt~l~~~~~~~~l~~g~----~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1107)
-+-.+|+|..+++++++ ..|+|.|+-= +|..... ...| -.+++++||| ..-.|+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad---tGEPqr~-Vt~P---------------~hatSLCWHp--e~~vLa~ 76 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD---TGEPQRD-VTYP---------------VHATSLCWHP--EEFVLAQ 76 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec---CCCCCcc-cccc---------------eehhhhccCh--HHHHHhh
Confidence 34457888889888886 3577776542 2332211 1122 3367899999 4555889
Q ss_pred EECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEE
Q 001287 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 275 (1107)
Q Consensus 196 ~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~ 275 (1107)
|..-|.+.+|.....+...+.. .++.+|+.+.|. ++|..++++..=|.+.
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~-----------------------------th~a~i~~l~wS-~~G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVE-----------------------------THPAPIQGLDWS-HDGTVLMTLDNPGSVH 126 (1416)
T ss_pred ccccceeEEEecCCceeeeecc-----------------------------CCCCCceeEEec-CCCCeEEEcCCCceeE
Confidence 9999999999877765543321 117789999995 9999999999999999
Q ss_pred EEeCCCC
Q 001287 276 LWNTSTT 282 (1107)
Q Consensus 276 lWd~~~~ 282 (1107)
+|.+...
T Consensus 127 lwr~d~~ 133 (1416)
T KOG3617|consen 127 LWRYDVI 133 (1416)
T ss_pred EEEeeec
Confidence 9998744
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.0001 Score=86.25 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=108.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC--CcEEEEEcCC-C
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITND--NEIQVWSLES-R 108 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d--~~I~vWDl~s-~ 108 (1107)
-+...-+|++|+-+.+.|++|+..|.|++|+.. +...-....|+.+|+.+.=+.||..+++.+.- -...+|+..+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 356788999999999999999999999999985 44445677899999999999998877666543 3588999865 2
Q ss_pred eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 109 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 109 ~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
...+++. .-.++.|+...++-++|+......|++..+ +...++ | +.+. . +.. -.=.+..|+|+
T Consensus 1179 ~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT--~~~l~t-y-lt~~-~----~~~----y~~n~a~FsP~- 1241 (1516)
T KOG1832|consen 1179 GPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQT--CSPLQT-Y-LTDT-V----TSS----YSNNLAHFSPC- 1241 (1516)
T ss_pred Ccccccc---ccceeehhhhHHHHHhcccccceEEEeccc--CcHHHH-h-cCcc-h----hhh----hhccccccCCC-
Confidence 3334432 335677887777777787766666666553 433322 1 1110 0 000 11267789886
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 189 SGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
.+++ ..||. +||++..+.+..+
T Consensus 1242 -D~LI---lndGv--LWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1242 -DTLI---LNDGV--LWDVRIPEAIHRF 1263 (1516)
T ss_pred -cceE---eeCce--eeeeccHHHHhhh
Confidence 3322 46774 8999887655443
No 323
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.40 E-value=0.061 Score=58.27 Aligned_cols=192 Identities=18% Similarity=0.155 Sum_probs=120.5
Q ss_pred EEEEEcC-CCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEE-eCCCEEEEEeCCCcEEEEEcCCCeeeeeec-
Q 001287 39 SILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFL-QNQGFLISITNDNEIQVWSLESRSLACCLK- 115 (1107)
Q Consensus 39 ~~lafsp-~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs-~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~- 115 (1107)
...+|++ ++.++.+-...+.|+.|+..+.+........ ...+.+. ++ +.|+.+.. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEeec
Confidence 3578998 7888888878899999999777665433322 6677777 55 56666654 445566999986654442
Q ss_pred -----cCCCeEEEEEecCCCEEEEEcCCCc------EEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEc
Q 001287 116 -----WESNITAFSVISGSHFMYIGDENGL------MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1107)
Q Consensus 116 -----~~~~Vt~l~~~~~~~~l~~g~~dg~------V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f 184 (1107)
.....+.+++++++++.++...... =.+|.++.+ ++.... ... + ....+|+|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~~--~-----------~~pNGi~~ 141 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---ADG--L-----------GFPNGIAF 141 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EEE--E-----------SSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE---ecC--c-----------ccccceEE
Confidence 2246888999999985554443211 246777765 554432 111 1 45789999
Q ss_pred ccCCCCCEEE-EEECCCeEEEEEccCCE--EE--EEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec
Q 001287 185 HPNSSGNRVL-IAYENALVILWDVSEAQ--II--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1107)
Q Consensus 185 ~P~~~~~~ll-~~~~dg~V~vwdl~~~~--~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1107)
+| +++.|+ +-+..+.|..|++.... +. ....+ .. . ..+..-.++..
T Consensus 142 s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~--------~~---~---------------~~g~pDG~~vD- 192 (246)
T PF08450_consen 142 SP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID--------FP---G---------------GPGYPDGLAVD- 192 (246)
T ss_dssp ET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---------S---S---------------SSCEEEEEEEB-
T ss_pred CC--cchheeecccccceeEEEeccccccceeeeeeEEE--------cC---C---------------CCcCCCcceEc-
Confidence 88 676565 45567788888886421 21 11100 00 0 01235567865
Q ss_pred CCCCEEEEEEcCCcEEEEeCC
Q 001287 260 SSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 260 pdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.+|+..++....+.|.+++..
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT
T ss_pred CCCCEEEEEcCCCEEEEECCC
Confidence 899988888889999999986
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.36 E-value=0.068 Score=58.07 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=71.0
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCc-EEEEeCCCccee-eeCCCCC--CEEEEEEEeCCCEEEEEeCC-----CcEEEE
Q 001287 34 IPATASILAFDH-IQRLLAIATLDGR-IKVIGGDGIEGL-LISPSQL--PYKNLEFLQNQGFLISITND-----NEIQVW 103 (1107)
Q Consensus 34 ~~~~i~~lafsp-~~~~LA~Gs~dg~-I~iw~~~~~~~~-~~~~h~~--~V~~l~fs~d~~~L~S~s~d-----~~I~vW 103 (1107)
+|.....++.+| ....+|++-.-|+ ..+||....+.. .+....+ -+=.-.||+||.+|++.-.| |.|.||
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 455667789999 6778888888876 467888555443 3332222 23456799999999997654 669999
Q ss_pred EcC-CCeeeeeec-cCCCeEEEEEecCCCEEEEEc
Q 001287 104 SLE-SRSLACCLK-WESNITAFSVISGSHFMYIGD 136 (1107)
Q Consensus 104 Dl~-s~~~~~~~~-~~~~Vt~l~~~~~~~~l~~g~ 136 (1107)
|.. +-+.+..+. +.-...-+.+.|+++.|+++.
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 999 445555553 333455677899998888884
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.26 E-value=0.048 Score=62.76 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=119.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCC-----C---------------------ccee------------------ee
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGD-----G---------------------IEGL------------------LI 72 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~-----~---------------------~~~~------------------~~ 72 (1107)
.|+.+.|.++..-||+|...|.|-||... + .+.+ +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999999999999999999997531 1 0000 11
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec---------cCCCeEEEEEec-----CC---CEEEEE
Q 001287 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK---------WESNITAFSVIS-----GS---HFMYIG 135 (1107)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~---------~~~~Vt~l~~~~-----~~---~~l~~g 135 (1107)
....++|++|+.| |-++++.+..+|.+.|-|++...++.... ....|+++.|.- ++ -.|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2256899999997 66899999999999999998888776532 123688888862 22 489999
Q ss_pred cCCCcEEEEEeec-CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC-------------------CCCEEEE
Q 001287 136 DENGLMSVIKYDA-DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-------------------SGNRVLI 195 (1107)
Q Consensus 136 ~~dg~V~vw~~d~-~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-------------------~~~~ll~ 195 (1107)
...|.+.++++.. ..+.......... ..+.+.|..|..--.+ .-..+++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~-----------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGAT-----------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE-------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeecc-----------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 9999999998874 2232221111111 0011333333211000 1122677
Q ss_pred EECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEee----cCCCCEEEEEEcC
Q 001287 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA----SSSGSILAVGYID 271 (1107)
Q Consensus 196 ~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~----spdg~~l~sg~~d 271 (1107)
..++..++++...+.+.....-- . .....++++. ...+..|++-..+
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~-~----------------------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFD-D----------------------------PFLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-S-S-----------------------------EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred EEcccceEEEeCCCCcccceeec-c----------------------------ccccceEEEEeecccCCceEEEEEECC
Confidence 77788889998877665332110 0 1122334443 1356788999999
Q ss_pred CcEEEEeCCCCC
Q 001287 272 GDILLWNTSTTA 283 (1107)
Q Consensus 272 G~I~lWd~~~~~ 283 (1107)
|.|+++.+...+
T Consensus 282 G~i~i~SLP~Lk 293 (395)
T PF08596_consen 282 GSIRIYSLPSLK 293 (395)
T ss_dssp SEEEEEETTT--
T ss_pred CcEEEEECCCch
Confidence 999999998763
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.26 E-value=0.052 Score=67.34 Aligned_cols=201 Identities=15% Similarity=0.220 Sum_probs=128.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc----CCCeee
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL----ESRSLA 111 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl----~s~~~~ 111 (1107)
..|.++.|--++.-+++++.+|.|.+-|......-....-...|.+++||||+..|+-++...+|.+-+- -..+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 4788899999999999999999999998876666555556779999999999999999998888766543 111111
Q ss_pred ----------eeecc-------------------------------CCCeEEEEEecCCCEEEEE-----cCCCcEEEEE
Q 001287 112 ----------CCLKW-------------------------------ESNITAFSVISGSHFMYIG-----DENGLMSVIK 145 (1107)
Q Consensus 112 ----------~~~~~-------------------------------~~~Vt~l~~~~~~~~l~~g-----~~dg~V~vw~ 145 (1107)
-..+| ...=+.++|-.+|+++++. ..-..|+||+
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 00011 1122458898999999883 2236788888
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC---CCeEEEEEccCCEEEEEeCCcccc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQIIFVGGGKDLQ 222 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~---dg~V~vwdl~~~~~~~~~g~~~~~ 222 (1107)
-+ |.|..+ +. +...--.+++|-| .|..+++... ++.|++|.-.+-+ |..+.
T Consensus 229 rE---g~Lns~-----se----------~~~~l~~~LsWkP--sgs~iA~iq~~~sd~~IvffErNGL~------hg~f~ 282 (1265)
T KOG1920|consen 229 RE---GALNST-----SE----------PVEGLQHSLSWKP--SGSLIAAIQCKTSDSDIVFFERNGLR------HGEFV 282 (1265)
T ss_pred cc---chhhcc-----cC----------cccccccceeecC--CCCeEeeeeecCCCCcEEEEecCCcc------ccccc
Confidence 66 344321 00 0113356789988 5765665443 3456555433211 21112
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE---EEcCCcEEEEeCCCCC
Q 001287 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV---GYIDGDILLWNTSTTA 283 (1107)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s---g~~dG~I~lWd~~~~~ 283 (1107)
+... ....+|..++|. .++..|++ ......|.+|-..+..
T Consensus 283 l~~p--------------------~de~~ve~L~Wn-s~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 283 LPFP--------------------LDEKEVEELAWN-SNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCc--------------------ccccchheeeec-CCCCceeeeecccccceEEEEEecCeE
Confidence 1100 114459999997 78888877 3344459999887653
No 327
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.25 E-value=0.0025 Score=73.91 Aligned_cols=159 Identities=10% Similarity=0.160 Sum_probs=117.7
Q ss_pred CCCeEEEEEcC--CCCEEEEEECCCcEEEEeCC----CcceeeeCCCCCCEEEEEEEeC-CCEEEEEeCCCcEEEEEcCC
Q 001287 35 PATASILAFDH--IQRLLAIATLDGRIKVIGGD----GIEGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 35 ~~~i~~lafsp--~~~~LA~Gs~dg~I~iw~~~----~~~~~~~~~h~~~V~~l~fs~d-~~~L~S~s~d~~I~vWDl~s 107 (1107)
|=.+....|+| .-.+-++.+....-.||++. ....+.+.+|..+|+.+-|.+. ...|++++.|-.+..||+.+
T Consensus 67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred cchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 33444555654 45677888888888899983 2344578899999999999985 45788899999999999988
Q ss_pred C-eeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 108 R-SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 108 ~-~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
- ..+.+. .+...-+.+.|+.....+++.+-...|+||+......-+ ..+.+|. ..|.++.|+
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl----~s~K~~v------------s~vn~~~fn 210 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL----CSLKGHV------------SSVNSIDFN 210 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcce----EEecccc------------eeeehHHHh
Confidence 6 344444 567777888999888888888888889999986532222 2245444 668888886
Q ss_pred cCCCCCEEEEEECCCeEEEEEccCC
Q 001287 186 PNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
....+ .+++.+.||+|+.||.+..
T Consensus 211 r~~~s-~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 211 RFKYS-EIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hhhhh-hhcccCCCCceeeeccccc
Confidence 54334 4899999999999998764
No 328
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.20 E-value=0.096 Score=57.80 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=89.5
Q ss_pred CCCCcEEEEEecCCcEEEEeCC-CCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCC
Q 001287 492 HSVDRVYLAGYHDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1107)
Q Consensus 492 s~~~~~laTgs~DgtIriWd~~-~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~ 570 (1107)
...++.|+.|..+| +.+++.+ ......+ .+..+|+.|...++-+.|++-+ |+.+.+|++..-..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRI-------------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeE-------------eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence 34566888898888 8999883 2222211 1122499999999888777665 49999999987532
Q ss_pred CccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEE---EcCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeecCC
Q 001287 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ---FTSSGAKLAVGFECGRVAVLDMNLLSVLF--FTDDIS 645 (1107)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la---~sp~~~~la~Gs~dg~V~iwd~~~~~~~~--~~~~~~ 645 (1107)
............ . ....-......+...+ -.....+|+++... .|.||....+...+ ..+. -
T Consensus 69 ~~~~~~~~~~~~--------~---~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke-~ 135 (275)
T PF00780_consen 69 VSTSAPLAFPKS--------R---SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKE-I 135 (275)
T ss_pred cccccccccccc--------c---cccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEE-E
Confidence 211000000000 0 0000011222344444 12234566666554 78998887642111 1112 1
Q ss_pred CCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcce
Q 001287 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1107)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~ 704 (1107)
..+..+.++.|. ++.+++|..++ ..++|.+++..
T Consensus 136 ~lp~~~~~i~~~------------------------~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 136 SLPDPPSSIAFL------------------------GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred EcCCCcEEEEEe------------------------CCEEEEEeCCc-eEEEecCCCCc
Confidence 245788889888 45577777664 77899887665
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0099 Score=65.58 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=85.0
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCc----eeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCC
Q 001287 493 SVDRVYLAGYHDGSVRIWDATYPV----FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1107)
Q Consensus 493 ~~~~~laTgs~DgtIriWd~~~~~----l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~ 568 (1107)
+.+..+++.-..|.|.-|...... -.....++.+..-..+..-....+++.|+|++..+.+-+.|..|+++.+.+.
T Consensus 154 qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 154 QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 333456666777899999887411 1111122211111112223346789999999999999999999999999886
Q ss_pred CCC-------ccceeeccCcCcceecccCCcceeEEEEeec-CcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE
Q 001287 569 LDA-------KNFLFVLETKSEVHALPEGKISLCRAVFSLV-NSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1107)
Q Consensus 569 ~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~ 638 (1107)
.-- ...++....+..+..+..+.-...-..+..| ...-+.+.|...+++|.-|+-=| |+|+++.+++++
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 311 0111111111111111111000001112223 23456788999999999999988 899999999988
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.014 Score=69.20 Aligned_cols=139 Identities=16% Similarity=0.227 Sum_probs=98.8
Q ss_pred CcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccc
Q 001287 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1107)
Q Consensus 495 ~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~ 574 (1107)
...++-|..+|.|++.+.+... . . ...|+.. ..+|.++++++.||.|.|..+.+....
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~-----------~-~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~--- 106 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-K-----------T-NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI--- 106 (846)
T ss_pred cceeeeccccceEEEEecCCcc-c-----------c-ccccccc------ccCCceEEEecCCCcEEEeeccCCccc---
Confidence 4589999999999999987654 2 1 2233333 668999999999999999888765321
Q ss_pred eeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCC-----CCEEEEEeCCCeEEEEEcC---CCeEEEEeecCCC
Q 001287 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-----GAKLAVGFECGRVAVLDMN---LLSVLFFTDDISG 646 (1107)
Q Consensus 575 ~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~-----~~~la~Gs~dg~V~iwd~~---~~~~~~~~~~~~~ 646 (1107)
.. .....++-+++++|+ .+++++|+.-| +.++.-. ....+ .+..
T Consensus 107 ----------------------~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----~l~~ 158 (846)
T KOG2066|consen 107 ----------------------TQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----VLSE 158 (846)
T ss_pred ----------------------ee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce----eeec
Confidence 11 234678999999998 57899999999 6666532 11111 2334
Q ss_pred CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 647 h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
-.++|.++.|. +++++-+..+| |+|+|..++..|..-
T Consensus 159 ~eG~I~~i~W~------------------------g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 159 GEGPIHSIKWR------------------------GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred CccceEEEEec------------------------CcEEEEecCCC-cEEEeccccceeecc
Confidence 67899999998 66666666554 689999888777554
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.16 E-value=0.11 Score=55.46 Aligned_cols=175 Identities=15% Similarity=0.207 Sum_probs=100.6
Q ss_pred eecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCC
Q 001287 30 VHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~-~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s 107 (1107)
..-|+...++.|+|+|+.. +.|+....+.|..++.++.... .....-+....|++..++.++++--.++.+.+.++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 4458888999999999755 6677777788888888654332 2223346799999998877777665688999999843
Q ss_pred Ce----e--eeee--c----cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCC--CceeecceeecccccccccCCCC
Q 001287 108 RS----L--ACCL--K----WESNITAFSVISGSHFMYIGDENGLMSVIKYDADE--GKLFQLPYNISADALSEKAGFPL 173 (1107)
Q Consensus 108 ~~----~--~~~~--~----~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~--~~l~~~~~~i~~~~~~~~~~~~~ 173 (1107)
.. . ...+ . ....+-.++|++.++.|+++-+..-..++.++... ..+... . ... ... ..
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~-~-~~~--~~~----~~ 167 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS-D-DQD--LDD----DK 167 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE-E--HH--HH-----HT
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec-c-ccc--ccc----cc
Confidence 21 1 1122 1 22458999999999999999888777777776411 111100 0 000 000 01
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF 214 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~ 214 (1107)
.....+.+++++|. .+.+++....+..|..+| ..++++.
T Consensus 168 ~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~ 206 (248)
T PF06977_consen 168 LFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVS 206 (248)
T ss_dssp --SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEE
T ss_pred ceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEE
Confidence 11245889999997 666677777888999999 4555544
No 332
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.15 E-value=0.034 Score=59.76 Aligned_cols=145 Identities=12% Similarity=0.181 Sum_probs=88.8
Q ss_pred CCcEEEEeCCCcceeeeCCCCCCEEEEE--EEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEE
Q 001287 56 DGRIKVIGGDGIEGLLISPSQLPYKNLE--FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1107)
Q Consensus 56 dg~I~iw~~~~~~~~~~~~h~~~V~~l~--fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~ 133 (1107)
+|.|..||..+.+.+-......+..... ..+++++++.++.++.|..||..+|+.+......+.+...- ...+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccc
Confidence 6788888885555443332211122222 44456788888999999999999999988776554433222 33566777
Q ss_pred EEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEE
Q 001287 134 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 213 (1107)
Q Consensus 134 ~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~ 213 (1107)
+++.++. ++.++..+|++.-..+...... ..........+ .+.+++++..++.|..+|+++++.+
T Consensus 81 v~~~~~~--l~~~d~~tG~~~W~~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 81 VGTSDGS--LYALDAKTGKVLWSIYLTSSPP---------AGVRSSSSPAV----DGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTSE--EEEEETTTSCEEEEEEE-SSCT---------CSTB--SEEEE----ETTEEEEEETCSEEEEEETTTTEEE
T ss_pred cccceee--eEecccCCcceeeeeccccccc---------cccccccCceE----ecCEEEEEeccCcEEEEecCCCcEE
Confidence 7778884 4556666677763201111000 00011122222 3667889999999999999999997
Q ss_pred EEe
Q 001287 214 FVG 216 (1107)
Q Consensus 214 ~~~ 216 (1107)
+..
T Consensus 146 w~~ 148 (238)
T PF13360_consen 146 WKY 148 (238)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 333
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.07 E-value=0.0093 Score=71.22 Aligned_cols=181 Identities=17% Similarity=0.149 Sum_probs=120.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCcceeeeC-CCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEE
Q 001287 46 IQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAF 123 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~~~~~~~-~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l 123 (1107)
+...+..|+.-..|..+|+.+....... -..+.|+-++ .++++|.++.+.|+|.+-|..+-+.++++ .|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4456777777777777777655433222 2222355443 45678999999999999999999999888 688888877
Q ss_pred EEecCCCEEEEEcCC---------CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEE
Q 001287 124 SVISGSHFMYIGDEN---------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1107)
Q Consensus 124 ~~~~~~~~l~~g~~d---------g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll 194 (1107)
.+ .++.|++++-. ..|+|||+...+ .+. |..++ ....-+.|+|. -..+++
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~--PI~~~---------------~~P~flrf~Ps-l~t~~~ 282 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALS--PIQFP---------------YGPQFLRFHPS-LTTRLA 282 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhh-ccC--Ccccc---------------cCchhhhhccc-ccceEE
Confidence 66 57777776543 345566654311 111 11122 22466789997 566799
Q ss_pred EEECCCeEEEEE---ccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcC
Q 001287 195 IAYENALVILWD---VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1107)
Q Consensus 195 ~~~~dg~V~vwd---l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~d 271 (1107)
+++..|...+-| +..........+ |. ...+.+++. |++|+.|+.|..+
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~~v~------------p~----------------~s~i~~fDi-Ssn~~alafgd~~ 333 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVKMVN------------PN----------------GSGISAFDI-SSNGDALAFGDHE 333 (1118)
T ss_pred EEecccceeeccccccCCCccceeEEc------------cC----------------CCcceeEEe-cCCCceEEEeccc
Confidence 999999988877 333322111111 00 334788885 5999999999999
Q ss_pred CcEEEEe
Q 001287 272 GDILLWN 278 (1107)
Q Consensus 272 G~I~lWd 278 (1107)
|.|.+|.
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999998
No 334
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.99 E-value=0.03 Score=50.85 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=69.7
Q ss_pred eEEEEE---cCCC-CEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 001287 38 ASILAF---DHIQ-RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1107)
Q Consensus 38 i~~laf---sp~~-~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~ 113 (1107)
|++|++ +-+| .-|.+|+.|..||||..+ +.+.+......|++|+-... .+++.+-.+|+|.|++-..+ +..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eee
Confidence 455554 3333 689999999999999866 45555556678888888877 67888888999999976333 333
Q ss_pred eccCCCeEEEEEecC---C-CEEEEEcCCCcEE
Q 001287 114 LKWESNITAFSVISG---S-HFMYIGDENGLMS 142 (1107)
Q Consensus 114 ~~~~~~Vt~l~~~~~---~-~~l~~g~~dg~V~ 142 (1107)
......++++++..- + +-|++|-.+|.|-
T Consensus 77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444445666665432 2 4789998888653
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.98 E-value=0.026 Score=66.82 Aligned_cols=155 Identities=10% Similarity=0.111 Sum_probs=100.2
Q ss_pred EcCCCCEEEEE-ECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEe--------------------------
Q 001287 43 FDHIQRLLAIA-TLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-------------------------- 95 (1107)
Q Consensus 43 fsp~~~~LA~G-s~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s-------------------------- 95 (1107)
++|||+.+..- -..+.+.++|.+..++.....=.+.-..++++++++++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 46677655332 233667777776655543222222445667777777776665
Q ss_pred --------------CCCcEEEEEcCC-----CeeeeeeccCCCeEEEEEecCCCEEEEEcC-CCcEEEEEeecCCC----
Q 001287 96 --------------NDNEIQVWSLES-----RSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEG---- 151 (1107)
Q Consensus 96 --------------~d~~I~vWDl~s-----~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~~d~~~~---- 151 (1107)
.++.|.|.|..+ ..++..+.-......+.++|+++++++++. +.+|.|.++.....
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 235688999888 466777777788899999999999987775 88999999875221
Q ss_pred ceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC
Q 001287 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
++. ..-.+-+. ... .......+|.+ +|+.+.+-+-|..|..||+..
T Consensus 360 ~~~-~~~~vvae--------vev-GlGPLHTaFDg--~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIK-PRDAVVAE--------PEL-GLGPLHTAFDG--RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCC-ccceEEEe--------ecc-CCCcceEEECC--CCCEEEeEeecceeEEEehHH
Confidence 110 00000000 000 13356778855 677788899999999999887
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.96 E-value=0.17 Score=59.00 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=50.6
Q ss_pred EEEcCCCCEEEEEECC----------C-cEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 41 LAFDHIQRLLAIATLD----------G-RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~d----------g-~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
+|.+|.|..+|+...+ . .|+||+..+.......--.+.+.++.|+.+ ..|+.+..||.++++|+....
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce
Confidence 5667777777776544 2 599999987755432222289999999886 678899999999999987444
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0034 Score=72.20 Aligned_cols=93 Identities=20% Similarity=0.226 Sum_probs=76.7
Q ss_pred CCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEE-EEEEcCCC
Q 001287 537 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR-ALQFTSSG 615 (1107)
Q Consensus 537 ~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt-~la~sp~~ 615 (1107)
..|--+.|+|.-.++|++..+|.|.+++++.. -+.++.-|...++ +++|.|||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q--------------------------Rlwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ--------------------------RLWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc--------------------------eeEeccCCCCccceeeeecCCC
Confidence 35778999999999999999999999998843 4566666777888 99999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEe
Q 001287 616 AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1107)
Q Consensus 616 ~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs 657 (1107)
++||+|..||+|++.|+..+..+... .......|..+-|.
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 99999999999999999998877331 22355677777776
No 338
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.013 Score=71.52 Aligned_cols=93 Identities=23% Similarity=0.422 Sum_probs=68.6
Q ss_pred CeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCE
Q 001287 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1107)
Q Consensus 538 ~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~ 617 (1107)
++..++-.-.+.+++.|+..|.|-..++..+-. +...-..-.++|++++|+.+|++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~------------------------~~~~ne~v~~~Vtsvafn~dg~~ 144 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLG------------------------PLHQNERVQGPVTSVAFNQDGSL 144 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccc------------------------hhhcCCccCCcceeeEecCCCce
Confidence 344444445677899999999999998877511 00111234789999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEe
Q 001287 618 LAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1107)
Q Consensus 618 la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs 657 (1107)
++.|-.+|.|.+||+..+.++ +.+..|..|++.+-+.
T Consensus 145 l~~G~~~G~V~v~D~~~~k~l---~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 145 LLAGLGDGHVTVWDMHRAKIL---KVITEHGAPVTGVIFV 181 (1206)
T ss_pred eccccCCCcEEEEEccCCcce---eeeeecCCccceEEEE
Confidence 999999999999999998887 3444466666666555
No 339
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.86 E-value=0.2 Score=54.47 Aligned_cols=176 Identities=15% Similarity=0.124 Sum_probs=102.2
Q ss_pred ccCCCCcEEEEE-----ecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC-------
Q 001287 490 KCHSVDRVYLAG-----YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF------- 557 (1107)
Q Consensus 490 ~~s~~~~~laTg-----s~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d------- 557 (1107)
.|++|+++|.|. ...|.|-|||+.... +.+ -++..|...-..|.+.||++.|+++..-
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~-~ri---------~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~ 126 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGY-RRI---------GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDS 126 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCc-EEE---------eEecCCCcChhhEEEcCCCCEEEEEcCCCccCccc
Confidence 799999999987 445779999999433 211 2355565566678899999998887531
Q ss_pred ceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEE--eecCcCEEEEEEcCCCCEEEEEeCCC-------eEE
Q 001287 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF--SLVNSPVRALQFTSSGAKLAVGFECG-------RVA 628 (1107)
Q Consensus 558 g~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~h~~~Vt~la~sp~~~~la~Gs~dg-------~V~ 628 (1107)
|..++ ++.+ ...+.-++....+ +-. -...+ ..|.-.|..|++.++|..++-.-..| .|.
T Consensus 127 GR~kL-Nl~t--M~psL~~ld~~sG--------~ll-~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva 194 (305)
T PF07433_consen 127 GRAKL-NLDT--MQPSLVYLDARSG--------ALL-EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVA 194 (305)
T ss_pred Cceec-Chhh--cCCceEEEecCCC--------cee-eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEE
Confidence 22222 1111 1111111111111 100 01123 34778899999999986554443333 244
Q ss_pred EEEcCCCeEEEEee--cCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEE-EEEcCCceEEEEeCCCccee
Q 001287 629 VLDMNLLSVLFFTD--DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI-IVLFKDAKISIVGGSSENMI 705 (1107)
Q Consensus 629 iwd~~~~~~~~~~~--~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L-~s~s~Dg~v~v~d~~~g~~i 705 (1107)
+++....-..+... ........|.+++|+ .++.++ +++=.-+.+.+||..+|.++
T Consensus 195 ~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~----------------------~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 195 LHRRGGALRLLPAPEEQWRRLNGYIGSIAAD----------------------RDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred EEcCCCcceeccCChHHHHhhCCceEEEEEe----------------------CCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 44444432221111 112356778899998 334444 55555678999999999999
Q ss_pred cCCC
Q 001287 706 SSSP 709 (1107)
Q Consensus 706 ~~~~ 709 (1107)
....
T Consensus 253 ~~~~ 256 (305)
T PF07433_consen 253 GSVP 256 (305)
T ss_pred eccc
Confidence 7763
No 340
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.82 E-value=2.2 Score=52.63 Aligned_cols=139 Identities=8% Similarity=0.092 Sum_probs=86.3
Q ss_pred CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee--ccCCCeEEEEEecCC-----
Q 001287 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGS----- 129 (1107)
Q Consensus 57 g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~--~~~~~Vt~l~~~~~~----- 129 (1107)
..||+++..+. .....-.+.++....+.|..+++.++.++.+...++..+.+.... ..+..|.|+.++|-+
T Consensus 470 ~~iRl~ss~~~--~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 470 NSIRLVSSAGL--RSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred ccEEEEcchhh--hhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 34666665521 122223455677677777778888888899998888877633222 456789999999753
Q ss_pred -CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEcc
Q 001287 130 -HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1107)
Q Consensus 130 -~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~ 208 (1107)
+++++|..+..+.+..+..+...+.. ..++.... +..|.-..+ -.+..+|+++..||.+.-|.+.
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~--~~l~~~~i----------PRSIl~~~~--e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITH--EQLSGEII----------PRSILLTTF--EGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeee--eccCCCcc----------chheeeEEe--eccceEEEEEcCCceEEEEEEE
Confidence 38999998887777766653222211 11221110 133444455 2246779999999988766655
Q ss_pred CCE
Q 001287 209 EAQ 211 (1107)
Q Consensus 209 ~~~ 211 (1107)
...
T Consensus 614 ~~t 616 (1096)
T KOG1897|consen 614 INT 616 (1096)
T ss_pred ccc
Confidence 443
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.79 E-value=1.2 Score=49.26 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.2
Q ss_pred eEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEc-CCceEEEEeCCCcce
Q 001287 626 RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-KDAKISIVGGSSENM 704 (1107)
Q Consensus 626 ~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s-~Dg~v~v~d~~~g~~ 704 (1107)
.|+++|+.+++.+.+... ..++.+++.+.. +..+|++.+ .++.|.|+|..+|+.
T Consensus 270 eVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd---------------------~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL----EHPIDSIAVSQD---------------------DKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEETTTTEEEEEEEE----EEEESEEEEESS---------------------SS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEEEEECCCCeEEEEEeC----CCccceEEEccC---------------------CCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 499999999998866553 345778888732 356787664 589999999999998
Q ss_pred ecCC
Q 001287 705 ISSS 708 (1107)
Q Consensus 705 i~~~ 708 (1107)
+.+-
T Consensus 325 ~~~~ 328 (342)
T PF06433_consen 325 VRSI 328 (342)
T ss_dssp EEEE
T ss_pred Eeeh
Confidence 7543
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.78 E-value=0.87 Score=47.40 Aligned_cols=101 Identities=8% Similarity=0.085 Sum_probs=77.5
Q ss_pred CCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEE-EEE
Q 001287 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITA-FSV 125 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~-l~~ 125 (1107)
..++..|+..+.+.--|.......-+..-...|.+-+..- |.+++.++..+.+.+.+..+|.........+.|.+ -.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV-GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE-CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 4677889999999888887777776666666776665553 47899999999999999999977666554444433 345
Q ss_pred ecCCCEEEEEcCCCcEEEEEeec
Q 001287 126 ISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 126 ~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
++++..++.|+.|++.+..|+..
T Consensus 102 d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred cCCCceEEEecCCCcEEEecccc
Confidence 68899999999999987777653
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.74 E-value=0.05 Score=60.04 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=97.9
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeee-----------
Q 001287 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC----------- 112 (1107)
Q Consensus 44 sp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~----------- 112 (1107)
...++.|++|+.+| |++|+...........+..+|+.|...++-+.|+..+ |+.|.++++..-....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 34688999999999 8999883332223333444599999999888888886 5999999987764433
Q ss_pred ----eeccCCCeEEEE--E-ecCCCEEEEEcCCCcEEEEEeecCCCce--eecceeecccccccccCCCCCCCCCeEEEE
Q 001287 113 ----CLKWESNITAFS--V-ISGSHFMYIGDENGLMSVIKYDADEGKL--FQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1107)
Q Consensus 113 ----~~~~~~~Vt~l~--~-~~~~~~l~~g~~dg~V~vw~~d~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1107)
.+.....+..++ - .....+|+++... .|.++.+....... ....+.++ +.+.+++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp---------------~~~~~i~ 145 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLP---------------DPPSSIA 145 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcC---------------CCcEEEE
Confidence 222334566666 1 2223455555544 78888887632221 11123343 6689999
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
|. ++.+++|+.++. .+.|+.++....+.
T Consensus 146 ~~----~~~i~v~~~~~f-~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 146 FL----GNKICVGTSKGF-YLIDLNTGSPSELL 173 (275)
T ss_pred Ee----CCEEEEEeCCce-EEEecCCCCceEEe
Confidence 94 445888887775 68899887665554
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.69 E-value=0.37 Score=55.34 Aligned_cols=101 Identities=10% Similarity=0.036 Sum_probs=68.9
Q ss_pred cCCCCEEEEEEC---------CCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 001287 44 DHIQRLLAIATL---------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1107)
Q Consensus 44 sp~~~~LA~Gs~---------dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~ 114 (1107)
|||+++++..+. .+.+.|||+...+...+......+....|||+|.+++-+. ++.|.+++..++......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 688888888432 3779999998887776666678899999999998888886 788999999888544322
Q ss_pred --cc----------------CCCeEEEEEecCCCEEEEEcC-CCcEEEEE
Q 001287 115 --KW----------------ESNITAFSVISGSHFMYIGDE-NGLMSVIK 145 (1107)
Q Consensus 115 --~~----------------~~~Vt~l~~~~~~~~l~~g~~-dg~V~vw~ 145 (1107)
+. -+.-.++-|+|++++|+.... +..|..+.
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 10 123467889999998886643 33344333
No 345
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.66 E-value=0.0056 Score=46.59 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.9
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc
Q 001287 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE 68 (1107)
Q Consensus 26 ~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~ 68 (1107)
++...+...+..|.+++|+|...+||+|+.+|.|.||.++...
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 3456667788899999999999999999999999999985543
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.65 E-value=0.097 Score=47.65 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=72.1
Q ss_pred EEEEEEEe-C---CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCcee
Q 001287 79 YKNLEFLQ-N---QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1107)
Q Consensus 79 V~~l~fs~-d---~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~ 154 (1107)
|++|++.. + ...|+.+|.|..|+||+=+ .++..+.....|++++.... ..++.|.++|+|-+++-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~------ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ------ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc------
Confidence 67777765 2 2589999999999999865 67777888889999988877 5688899999998876431
Q ss_pred ecceeecccccccccCCCCCCCCCeEEEEccc-CCCCC-EEEEEECCCeEE
Q 001287 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHP-NSSGN-RVLIAYENALVI 203 (1107)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P-~~~~~-~ll~~~~dg~V~ 203 (1107)
+ -+++... ..++++.+.. ..+|. -|++|.++|.|-
T Consensus 73 R-lWRiKSK-------------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 R-LWRIKSK-------------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-eeeeccC-------------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1 1445432 2366665532 22222 388999999763
No 347
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0012 Score=64.49 Aligned_cols=65 Identities=23% Similarity=0.457 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHhccCCChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001287 1035 PRLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1106 (1107)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~~~~~ 1106 (1107)
|...++..+|+. -.-+-+++-.+=+|+.+||||||-|-++||-|++++.+|-.-++.|.++ .|||
T Consensus 122 p~id~lskvkaq---v~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~----mw~~ 186 (217)
T KOG0859|consen 122 PEISKLAKVKAQ---VTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRK----MWFQ 186 (217)
T ss_pred cchhHHHHHHHH---HHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHH----HHHh
Confidence 555666666666 2233488999999999999999999999999999999999998888776 5886
No 348
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.26 Score=52.45 Aligned_cols=179 Identities=16% Similarity=0.176 Sum_probs=120.2
Q ss_pred CCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccC--CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCc
Q 001287 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1107)
Q Consensus 75 h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~--~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~ 152 (1107)
-...|++|.|+|+.+.|+++.....-.||=-..|+++.++... ....++.+..++++.++--.+..+++..++.++..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 3445999999999999999999999999988999999888544 35567788888888888888999999999887555
Q ss_pred eeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE-EEEEeCCccccccccccCCC
Q 001287 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSP 231 (1107)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~-~~~~~g~~~~~~~~~~~~~~ 231 (1107)
+....++++-. ..........+++|.| ...+|+.+-+..-+.||-+.... .... |.
T Consensus 164 ~~~~~~~i~L~-------~~~k~N~GfEGlA~d~--~~~~l~~aKEr~P~~I~~~~~~~~~l~~--~~------------ 220 (316)
T COG3204 164 ISAKVQKIPLG-------TTNKKNKGFEGLAWDP--VDHRLFVAKERNPIGIFEVTQSPSSLSV--HA------------ 220 (316)
T ss_pred EeccceEEecc-------ccCCCCcCceeeecCC--CCceEEEEEccCCcEEEEEecCCccccc--cc------------
Confidence 44332333321 1122246689999988 45558888888877777665322 1110 10
Q ss_pred CCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCC
Q 001287 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1107)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~ 282 (1107)
...+....+ .--..|.++.|..+.+..|+-+..++.+.-.|....
T Consensus 221 ~~~~~~~~~------~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 221 SLDPTADRD------LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccCcccccc------eEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 000000000 003467778877667788888888888887777543
No 349
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.55 E-value=2.3 Score=49.24 Aligned_cols=287 Identities=11% Similarity=0.143 Sum_probs=154.6
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEE---e--CCCeEEEeccCceEEEEEecC
Q 001287 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC---F--INSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 493 ~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fs---p--d~~~Lasg~~dg~V~vw~~~~ 567 (1107)
.+...|+.|+..|.+||++........... ..+..+. .||-.|+.- + +...||+ -.-..+.||.+..
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~l----llE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~ 106 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDL----LLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSL 106 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccE----EEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEe
Confidence 355689999999999999986554321000 0011122 366666543 2 3345665 4467888998844
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEEEEeec-CcCEEEEEEcCC-----CCEEEEEeCCCeEEEEEcCCCeEEEEe
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NSPVRALQFTSS-----GAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-~~~Vt~la~sp~-----~~~la~Gs~dg~V~iwd~~~~~~~~~~ 641 (1107)
.... ...++-++....+..+ +.....+++-|- ..+|++=+.||.+.+++-+.-....
T Consensus 107 ~~g~---------------~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~-- 169 (418)
T PF14727_consen 107 VDGT---------------VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR-- 169 (418)
T ss_pred cCCC---------------cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE--
Confidence 3211 0011122222222221 333444544443 2689999999999999988755432
Q ss_pred ecCCC--CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceecCCC----------
Q 001287 642 DDISG--SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSP---------- 709 (1107)
Q Consensus 642 ~~~~~--h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~~---------- 709 (1107)
.+++ +++| +.|.+ ..+.+++++.+..|.-+.-.. |....
T Consensus 170 -~lp~~llPgP---l~Y~~----------------------~tDsfvt~sss~~l~~Yky~~---La~~s~~~~~~~~~~ 220 (418)
T PF14727_consen 170 -FLPDFLLPGP---LCYCP----------------------RTDSFVTASSSWTLECYKYQD---LASASEASSRQSGTE 220 (418)
T ss_pred -EcCCCCCCcC---eEEee----------------------cCCEEEEecCceeEEEecHHH---hhhcccccccccccc
Confidence 2222 4444 33442 244578888887777666321 11000
Q ss_pred ------------CcccccceeeEEEEecCCCCCCccccccccccccccCCCCCCCCCCcccCCCccccccccccccCCCC
Q 001287 710 ------------WHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGES 777 (1107)
Q Consensus 710 ------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 777 (1107)
+.-.-+-.++.|.+++ ...
T Consensus 221 ~~~~~~k~l~~dWs~nlGE~~l~i~v~~------------------------------------------------~~~- 251 (418)
T PF14727_consen 221 QDISSGKKLNPDWSFNLGEQALDIQVVR------------------------------------------------FSS- 251 (418)
T ss_pred ccccccccccceeEEECCceeEEEEEEE------------------------------------------------cCC-
Confidence 0000111111111111 111
Q ss_pred CCCcEEEEEecCeeEEEeccccccccceeeeeecCCCcceeeeee--ecCCc-eeEEEEEeecCcEEEeecCCccccccc
Q 001287 778 SNDALVLLCCEDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTI--EKDEK-VCGLLLLFQTGAVQIRSLPDLELVMES 854 (1107)
Q Consensus 778 ~~~~~~l~c~e~~l~v~sl~~~~~g~~~~i~k~~~~~~~~~~~~~--~~~~~-~~~l~~~~~~G~i~i~slp~l~~~~~~ 854 (1107)
....+++.+|..+.+++.+. .-+..+|......|+-.-.+ ...++ ...++....||+|+||.=-.|.
T Consensus 252 -~~~~IvvLger~Lf~l~~~G----~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~----- 321 (418)
T PF14727_consen 252 -SESDIVVLGERSLFCLKDNG----SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV----- 321 (418)
T ss_pred -CCceEEEEecceEEEEcCCC----eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE-----
Confidence 16788888999998887755 33444444444444332222 12222 2358888899999999654443
Q ss_pred cccceeeceecCcc----cccccc-c-CCcEEEEcCceeEEEEeecCCCce
Q 001287 855 SLMSILRWNFKANM----DKTISA-D-NGQITLANGSEVAFVNLLAGENEF 899 (1107)
Q Consensus 855 ~~~~~~~~~~~~~~----~~~~~~-s-~Gq~~l~~~~e~~~~s~~~~~~~~ 899 (1107)
|+-+... +..-.| . +|-++..+.++..-++.+.++-..
T Consensus 322 -------WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 322 -------WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred -------EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 6654332 332222 3 788888888887777888876533
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.53 E-value=0.24 Score=53.06 Aligned_cols=172 Identities=16% Similarity=0.255 Sum_probs=96.8
Q ss_pred CCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCeeeeeeccC--CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCc
Q 001287 76 QLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1107)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~~~~~~~~~--~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~ 152 (1107)
...++.|+|.|+.+.|+++.. .+.|...+. +++++..+... +..-.+++..++.++++--.++.+.+..++..+..
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 345999999999888888876 456766776 47787777544 56888889888877777667898988888654433
Q ss_pred eeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC---CEEEE---EeCCcccccccc
Q 001287 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---AQIIF---VGGGKDLQLKDG 226 (1107)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~---~~~~~---~~g~~~~~~~~~ 226 (1107)
+.... +... ..+.+..+...+.+++|.| .+++|+++-...-..||.+.. ..... ...+..
T Consensus 100 ~~~~~--~~~~----~l~~~~~~N~G~EGla~D~--~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~------ 165 (248)
T PF06977_consen 100 LDRAD--VQKI----SLGFPNKGNKGFEGLAYDP--KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD------ 165 (248)
T ss_dssp --EEE--EEEE----E---S---SS--EEEEEET--TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-------
T ss_pred cchhh--ceEE----ecccccCCCcceEEEEEcC--CCCEEEEEeCCCChhhEEEccccCccceeecccccccc------
Confidence 32110 0000 1122223346799999988 466688888887777777664 11111 111100
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
.......+.++.++...|..++-...+..|..+|..
T Consensus 166 ------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 166 ------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp ------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred ------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 001144578888875566777777778888888854
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.01 Score=68.39 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=79.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEE-EEEEEeCCCEEEEEeCCCcEEEEEcCCCeee
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYK-NLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~-~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~ 111 (1107)
-.|..+--+.|+|.-.++|+++.+|.|-+..+....+....-|..+|+ +++|-|||..|+.+=.||+|++-|++++..+
T Consensus 18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 356778889999999999999999999998888444445554666777 9999999999999999999999999999988
Q ss_pred ee--eccCCCeEEEEEe
Q 001287 112 CC--LKWESNITAFSVI 126 (1107)
Q Consensus 112 ~~--~~~~~~Vt~l~~~ 126 (1107)
.. ......|+++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 87 5667788888776
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.50 E-value=0.0079 Score=42.58 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=33.5
Q ss_pred eEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001287 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1107)
Q Consensus 595 ~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd 631 (1107)
+...+..|...|++++|++++.++++|+.||.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 353
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.50 E-value=1.9 Score=51.75 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=42.9
Q ss_pred CCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCc
Q 001287 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1107)
Q Consensus 623 ~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g 702 (1107)
.+|.|.-+|+.+++++++.... .+.... .+. .|.- ..+..-.+.+|++++.||.|+.+|..+|
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~-~~~~~~---~~g----------~~~~---~~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREG-TIRDSW---NIG----------FPHW---GGSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCC-cccccc---ccC----------Cccc---CcceEecCCeEEEECCCCeEEEEECCCC
Confidence 4678888999999998876542 111100 000 0000 0000012578999999999999999999
Q ss_pred ceecCC
Q 001287 703 NMISSS 708 (1107)
Q Consensus 703 ~~i~~~ 708 (1107)
+.+-+.
T Consensus 427 ~~lW~~ 432 (488)
T cd00216 427 KELWKF 432 (488)
T ss_pred ceeeEE
Confidence 988554
No 354
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.49 E-value=0.03 Score=67.14 Aligned_cols=151 Identities=10% Similarity=0.158 Sum_probs=109.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeC---------CCcEEEEEcC
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN---------DNEIQVWSLE 106 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~---------d~~I~vWDl~ 106 (1107)
+|+.|.+. +++|.+|...|.|-+-|....+.. ..-.|++.|+.+.. .|..|++|+. |..|+|||++
T Consensus 179 ~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh
Confidence 36666664 799999999999999999766554 67789998887655 4567999885 5569999999
Q ss_pred CCeeeeeeccCCCeEEEEEecC-CCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 107 SRSLACCLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 107 s~~~~~~~~~~~~Vt~l~~~~~-~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
.-+.+.-++.+....-+.|.|. ...+++.+..|...+.+-.........+.+..+. . ..+.++.++
T Consensus 255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~------------s~i~~fDiS 321 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-G------------SGISAFDIS 321 (1118)
T ss_pred hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-C------------CcceeEEec
Confidence 9888777766655566677776 4688999999988887722211111111111221 1 347888886
Q ss_pred cCCCCCEEEEEECCCeEEEEE
Q 001287 186 PNSSGNRVLIAYENALVILWD 206 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwd 206 (1107)
+ .++.++.|..+|.|.+|.
T Consensus 322 s--n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 322 S--NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred C--CCceEEEecccCcEeeec
Confidence 6 677799999999999998
No 355
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.44 E-value=3.8 Score=50.64 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=70.5
Q ss_pred CeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCC--
Q 001287 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-- 615 (1107)
Q Consensus 538 ~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~-- 615 (1107)
.++....+.+...+++++.++.+....+....- ....-......|.|+.++|-|
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l------------------------~e~~~~~~e~evaCLDisp~~d~ 544 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGL------------------------REVSHKEFEYEVACLDISPLGDA 544 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccce------------------------eeeeeheecceeEEEecccCCCC
Confidence 455555555666677777777666666555310 001112246789999999853
Q ss_pred ----CEEEEEeCCCeEEEEEcCCCeEEEEeecCCC--CCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEc
Q 001287 616 ----AKLAVGFECGRVAVLDMNLLSVLFFTDDISG--SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 689 (1107)
Q Consensus 616 ----~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~--h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s 689 (1107)
+++|+|..+..+.+.-.-....+.....+.+ .+..|.-..|. -+..+|+++.
T Consensus 545 ~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e----------------------~d~~yLlval 602 (1096)
T KOG1897|consen 545 PNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFE----------------------GDIHYLLVAL 602 (1096)
T ss_pred CCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEee----------------------ccceEEEEEc
Confidence 4899999888777765543332221111221 23333333443 2367899999
Q ss_pred CCceEE--EEeCCCcce
Q 001287 690 KDAKIS--IVGGSSENM 704 (1107)
Q Consensus 690 ~Dg~v~--v~d~~~g~~ 704 (1107)
.||.++ ++|..+|.+
T Consensus 603 gdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 603 GDGALLYFVLDINTGQL 619 (1096)
T ss_pred CCceEEEEEEEcccceE
Confidence 999986 556666554
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.34 E-value=0.069 Score=62.14 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=97.4
Q ss_pred EEEEcCCCCEEEEEE---CC-CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC-CCc--EEEEEcCCCeeee
Q 001287 40 ILAFDHIQRLLAIAT---LD-GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNE--IQVWSLESRSLAC 112 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs---~d-g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~--I~vWDl~s~~~~~ 112 (1107)
.-+|+|+++.++.-+ .. .+|++++++...........+.-..-+|+|||.+|+-+.. |+. |.+.|+.++....
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~ 276 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR 276 (425)
T ss_pred ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence 356788888766642 22 4688888866554444445556667789999988776664 444 7788898887544
Q ss_pred eeccCCCeEEEEEecCCCEEE-EEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCC
Q 001287 113 CLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1107)
Q Consensus 113 ~~~~~~~Vt~l~~~~~~~~l~-~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~ 191 (1107)
.....+.-+.=+|+|++++++ +.+..|.-.||.++.+.+...+ ++.... . -..-.|+| +|+
T Consensus 277 Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r--iT~~~~-------------~-~~~p~~Sp--dG~ 338 (425)
T COG0823 277 LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR--LTFSGG-------------G-NSNPVWSP--DGD 338 (425)
T ss_pred cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE--eeccCC-------------C-CcCccCCC--CCC
Confidence 333444444667889998765 6667888888888877665543 222211 1 11445655 788
Q ss_pred EEEEEECC-Ce--EEEEEccCCE
Q 001287 192 RVLIAYEN-AL--VILWDVSEAQ 211 (1107)
Q Consensus 192 ~ll~~~~d-g~--V~vwdl~~~~ 211 (1107)
+++..... |. |.+.|+.++.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCC
Confidence 77766643 43 5566665554
No 357
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.12 Score=63.61 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=74.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCcce-eeeCCC-CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccCCC---
Q 001287 46 IQRLLAIATLDGRIKVIGGDGIEG-LLISPS-QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESN--- 119 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~~~-~~~~~h-~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~--- 119 (1107)
.+.++|+|+..|.|-.+|..+.-. +....| .+||++++|+.+|.+|+.|=.+|.|.+||...+.+++.+ .+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 467899999999999988766422 122222 569999999999999999999999999999999888776 23333
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 120 ITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 120 Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
|..+-+..++..+++++..|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 333344455557899999996 47654
No 358
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.02 E-value=0.0021 Score=73.79 Aligned_cols=198 Identities=14% Similarity=0.223 Sum_probs=121.7
Q ss_pred eEEEE--EcCCCCEEEEEECCCcEEEEeCCC---cceeeeCCCCCCEEEEEEEe-CCCEEEEEeC----CCcEEEEEcCC
Q 001287 38 ASILA--FDHIQRLLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQ-NQGFLISITN----DNEIQVWSLES 107 (1107)
Q Consensus 38 i~~la--fsp~~~~LA~Gs~dg~I~iw~~~~---~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~----d~~I~vWDl~s 107 (1107)
+.|++ |+.++.++|+|..+|.|-+-.... .......+|..+.++++|++ |...|+.+=. |..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 44554 455678999999999999876632 23446677888999999988 5455655532 45699999998
Q ss_pred Ce--eeeee----ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEE
Q 001287 108 RS--LACCL----KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1107)
Q Consensus 108 ~~--~~~~~----~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~ 181 (1107)
+- +.... .......++++..+.+.+.+|.....+.+.++........ .+.. ..|.+
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----svnT--------------k~vqG 200 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----SVNT--------------KYVQG 200 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----hhhh--------------hhccc
Confidence 82 22221 1223456788888888899998888887777652100000 0111 33555
Q ss_pred EEcccCCCCCEEEEEECCCeEEEEEc-cCCE-EEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec
Q 001287 182 VLPHPNSSGNRVLIAYENALVILWDV-SEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1107)
Q Consensus 182 v~f~P~~~~~~ll~~~~dg~V~vwdl-~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1107)
+...|- .++ .++.+.||.|.+||- ..-+ ......| .+....+.+..++|.
T Consensus 201 ~tVdp~-~~n-Y~cs~~dg~iAiwD~~rnienpl~~i~~-------------------------~~N~~~~~l~~~ayc- 252 (783)
T KOG1008|consen 201 ITVDPF-SPN-YFCSNSDGDIAIWDTYRNIENPLQIILR-------------------------NENKKPKQLFALAYC- 252 (783)
T ss_pred ceecCC-CCC-ceeccccCceeeccchhhhccHHHHHhh-------------------------CCCCcccceeeEEec-
Confidence 555553 244 577788999999993 3221 1111111 000114568899985
Q ss_pred CCCC-EEEEEE-cCCcEEEEeCCC
Q 001287 260 SSGS-ILAVGY-IDGDILLWNTST 281 (1107)
Q Consensus 260 pdg~-~l~sg~-~dG~I~lWd~~~ 281 (1107)
|... .+++.. ..++|+++++..
T Consensus 253 Ptrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCCcchhhhhccCcceEEEecccc
Confidence 6543 344444 457899998864
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.88 E-value=0.88 Score=56.36 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=91.3
Q ss_pred CCCCcEEEEE-ecCCcEEEEeCCCCceeEEEeeccceeeeeecCCC-CCeEEEEEEeCC-------CeEEEeccCceEEE
Q 001287 492 HSVDRVYLAG-YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR-APVSTLSFCFIN-------SSLAVGNEFGLVYI 562 (1107)
Q Consensus 492 s~~~~~laTg-s~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~-~~Vt~l~fspd~-------~~Lasg~~dg~V~v 562 (1107)
..+.++|+.- .....|+--|+..++... ++.-|. .+| ..|.|+. .--++|-.+..+..
T Consensus 490 ~~d~~mil~~~~~~~~ly~mDLe~GKVV~-----------eW~~~~~~~v--~~~~p~~K~aqlt~e~tflGls~n~lfr 556 (794)
T PF08553_consen 490 DQDRNMILLDPNNPNKLYKMDLERGKVVE-----------EWKVHDDIPV--VDIAPDSKFAQLTNEQTFLGLSDNSLFR 556 (794)
T ss_pred ccccceEeecCCCCCceEEEecCCCcEEE-----------EeecCCCcce--eEecccccccccCCCceEEEECCCceEE
Confidence 3445555544 345668888888888552 233332 223 3444432 22345666777888
Q ss_pred EEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEee
Q 001287 563 YNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTD 642 (1107)
Q Consensus 563 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~ 642 (1107)
||.+-..+. .+ ... ... -......+|++-+.+| +||+|+.+|.|++||-.+.+.. .
T Consensus 557 iDpR~~~~k----~v-----------~~~----~k~-Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AK---T 612 (794)
T PF08553_consen 557 IDPRLSGNK----LV-----------DSQ----SKQ-YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAK---T 612 (794)
T ss_pred eccCCCCCc----ee-----------ecc----ccc-cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhh---h
Confidence 877654211 00 000 001 1235567888888888 7999999999999996553322 3
Q ss_pred cCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 643 ~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
.+++...||.+|.-+ .+|.+|++ +.+..|.++|..
T Consensus 613 ~lp~lG~pI~~iDvt----------------------~DGkwila-Tc~tyLlLi~t~ 647 (794)
T PF08553_consen 613 ALPGLGDPIIGIDVT----------------------ADGKWILA-TCKTYLLLIDTL 647 (794)
T ss_pred cCCCCCCCeeEEEec----------------------CCCcEEEE-eecceEEEEEEe
Confidence 567889999999998 45777664 445577788753
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.88 E-value=0.17 Score=62.33 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=89.6
Q ss_pred eCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecC-------CCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccc
Q 001287 95 TNDNEIQVWSLESRSLACCLKWESNITAFSVISG-------SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1107)
Q Consensus 95 s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~-------~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1107)
...+.|.--|++.|+++........+.-..+.|+ ....++|-.+..++.||......+++.. ..+..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~----~~k~Y-- 574 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS----QSKQY-- 574 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec----ccccc--
Confidence 4567899999999999998865544433444443 2356788888888888766544444421 11110
Q ss_pred ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe-CCccccccccccCCCCCCCCccccCCCCCC
Q 001287 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1107)
Q Consensus 168 ~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1107)
.......|++- +.+|. |++|+.+|.||+||--+.+....+ +.
T Consensus 575 ------~~~~~Fs~~aT--t~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~l---------------------------- 617 (794)
T PF08553_consen 575 ------SSKNNFSCFAT--TEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGL---------------------------- 617 (794)
T ss_pred ------ccCCCceEEEe--cCCce-EEEEeCCCcEEeecccchhhhhcCCCC----------------------------
Confidence 11134677766 54675 999999999999994332222111 11
Q ss_pred CCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 247 PEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 247 ~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
..+|.+++ .+.||++|++.|. -.|.+++..
T Consensus 618 --G~pI~~iD-vt~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 618 --GDPIIGID-VTADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred --CCCeeEEE-ecCCCcEEEEeec-ceEEEEEEe
Confidence 45899999 5699999887765 567777753
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.85 E-value=0.37 Score=56.37 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=39.1
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 90 FLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 90 ~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
.|+....++.|.+||+++++.+..+.... |..+.|++++.+++..+.+ +++|++++.
T Consensus 118 ~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 118 NLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred cEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 34444445589999999999999997665 8999999999999999866 578988875
No 362
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.84 E-value=0.0046 Score=73.05 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=97.6
Q ss_pred ccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEE
Q 001287 474 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1107)
Q Consensus 474 ~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Las 553 (1107)
..|.....+.....+++|+.+.+.|+.|+-.|.|+++++.++... -....|..+||.+.=+.||.++.+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----------~s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----------ESVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----------ccccccccccccccccCCcceeee
Confidence 455555556677788899999999999999999999999998855 456789999999999999988776
Q ss_pred eccCc--eEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001287 554 GNEFG--LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1107)
Q Consensus 554 g~~dg--~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd 631 (1107)
.+... ...+|++...- +....|. .-.++.|+...++-++|+....+.|||
T Consensus 1161 sss~S~PlsaLW~~~s~~------------------------~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YD 1212 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTG------------------------GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYD 1212 (1516)
T ss_pred eccccCchHHHhcccccc------------------------Ccccccc----ccceeehhhhHHHHHhcccccceEEEe
Confidence 55543 57788876631 1223332 345788988877778888777899999
Q ss_pred cCCCeEE
Q 001287 632 MNLLSVL 638 (1107)
Q Consensus 632 ~~~~~~~ 638 (1107)
++++..+
T Consensus 1213 vqT~~~l 1219 (1516)
T KOG1832|consen 1213 VQTCSPL 1219 (1516)
T ss_pred cccCcHH
Confidence 9998876
No 363
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.72 E-value=6.8 Score=47.11 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCC-------eEEEEEecCC-CEEEEEcCCCcEEEEEeecCCCceeeccee
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCLKWESN-------ITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYN 159 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~-------Vt~l~~~~~~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~ 159 (1107)
+.+++.++.++.|.-.|..+++.+........ +..--..-.+ ..+++++.+|.|+.+ |..+|++.- +
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~Al--D~~TG~~~W---~ 135 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVAL--DAETGKQVW---K 135 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEE--ECCCCCEee---e
Confidence 35677788889999999999988766533221 1000001123 788899999976554 555577663 2
Q ss_pred ecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE---------CCCeEEEEEccCCEEEEEeC
Q 001287 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY---------ENALVILWDVSEAQIIFVGG 217 (1107)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~---------~dg~V~vwdl~~~~~~~~~g 217 (1107)
....... ..-..+.-.|.-.+.++++++ .+|.|..+|..+++.++.+.
T Consensus 136 ~~~~~~~----------~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 136 FGNNDQV----------PPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred ecCCCCc----------CcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 3211100 000112222322234455554 36788999999999887653
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.63 E-value=0.74 Score=52.07 Aligned_cols=122 Identities=12% Similarity=0.178 Sum_probs=80.2
Q ss_pred ccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEE
Q 001287 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1107)
Q Consensus 24 ~~~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~v 102 (1107)
..++....+-+++.|++++.- +..|++|. ++.|++|++...+ ......+..++..++....+.+++.+..-..|.+
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEE
T ss_pred eEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEE
Confidence 456666777788899888766 44566665 5899999997666 5544444443344444444568888888888887
Q ss_pred EEcCC--Ceeeeee--ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 103 WSLES--RSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 103 WDl~s--~~~~~~~--~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
+.++. .++.... ..+..++++.+.++++.+++++.+|++.++.++.
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 75543 3232221 2345688999986667999999999999999874
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.61 E-value=0.11 Score=60.59 Aligned_cols=142 Identities=10% Similarity=0.158 Sum_probs=74.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeec
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~ 115 (1107)
-.+..+.++|+++++++++ ||.-.||......- ...+.-....|++. +..+.....++|.|..--+......+.
T Consensus 33 ~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~----k~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN----KAFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE----EEEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT----
T ss_pred cCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc----cccCceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEc
Confidence 3478899999999999965 67777777322211 11244566778884 557777778889996433333333444
Q ss_pred cCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEE
Q 001287 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1107)
Q Consensus 116 ~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~ 195 (1107)
.+..+..+-. |..|.+.+.+ .|.+||++. ++++.. +.- .+|..|.|++ ++++++.
T Consensus 107 ~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~--~~~i~~---i~v--------------~~vk~V~Ws~--~g~~val 161 (443)
T PF04053_consen 107 LPFSVEKIFG---GNLLGVKSSD-FICFYDWET--GKLIRR---IDV--------------SAVKYVIWSD--DGELVAL 161 (443)
T ss_dssp -SS-EEEEE----SSSEEEEETT-EEEEE-TTT----EEEE---ESS---------------E-EEEEE-T--TSSEEEE
T ss_pred CCcccceEEc---CcEEEEECCC-CEEEEEhhH--cceeeE---Eec--------------CCCcEEEEEC--CCCEEEE
Confidence 4434444433 7766666554 677777664 555532 441 3389999977 6887888
Q ss_pred EECCCeEEEEEccC
Q 001287 196 AYENALVILWDVSE 209 (1107)
Q Consensus 196 ~~~dg~V~vwdl~~ 209 (1107)
.+.+.. .|++...
T Consensus 162 ~t~~~i-~il~~~~ 174 (443)
T PF04053_consen 162 VTKDSI-YILKYNL 174 (443)
T ss_dssp E-S-SE-EEEEE-H
T ss_pred EeCCeE-EEEEecc
Confidence 776654 5555433
No 366
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.3 Score=58.77 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=83.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-----cceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDG-----IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~-----~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~ 109 (1107)
|..+++++.+.+-+.+|+|-.||.|..+..+- ...........||+.|.|-.++.-++-+..-..|.++.+..+.
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 56689999999999999999999999997743 2333455567799999999998875555567789999998666
Q ss_pred e-eeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 110 L-ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 110 ~-~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
+ +..+ .+...+.|-++++....+.++...+ +++++-+
T Consensus 205 p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd 243 (933)
T KOG2114|consen 205 PSLKVLDNNGISLNCSSFSDGTYQFICAGSEF-LYFYDSD 243 (933)
T ss_pred cceeeeccCCccceeeecCCCCccEEEecCce-EEEEcCC
Confidence 3 3334 4556889999998888666665554 4555444
No 367
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.57 E-value=0.36 Score=56.25 Aligned_cols=122 Identities=13% Similarity=0.137 Sum_probs=78.9
Q ss_pred CCCCCEEEEEEEeCCCEEEEEeC---C-CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEE-EEcCCCcEEEEEeec
Q 001287 74 PSQLPYKNLEFLQNQGFLISITN---D-NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDA 148 (1107)
Q Consensus 74 ~h~~~V~~l~fs~d~~~L~S~s~---d-~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~-~g~~dg~V~vw~~d~ 148 (1107)
.-...+..-.|++++..++-.+. . ..|.++|+.+++....+...+.-..-+|+|++++|+ +...||...||-+|.
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 33445666678888776655532 2 469999999998777777777777789999998665 556789888888887
Q ss_pred CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC-CC--eEEEEEccCCEEE
Q 001287 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEAQII 213 (1107)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~-dg--~V~vwdl~~~~~~ 213 (1107)
..+.+.+ +.... +.-+.=.|+| +|+.++-.+. .| .|.+.|.+.....
T Consensus 270 ~~~~~~~----Lt~~~------------gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 270 DGKNLPR----LTNGF------------GINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCCccee----cccCC------------ccccCccCCC--CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 6555443 22111 1112335666 6776665544 44 5566677766553
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.41 E-value=0.54 Score=57.25 Aligned_cols=153 Identities=9% Similarity=0.114 Sum_probs=89.8
Q ss_pred CCeEEEEEcCCCCEEEEEE------CCC--cEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC----------
Q 001287 36 ATASILAFDHIQRLLAIAT------LDG--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---------- 97 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs------~dg--~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d---------- 97 (1107)
..++..+++|+++.+|.-. .|. .|.+++..+....+..+. ..+.-.|+|||..|.+++..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4577899999999988776 244 445545433332233332 37888999998888777533
Q ss_pred --CcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec-CCCceee-cceeecccccccccCCCC
Q 001287 98 --NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDA-DEGKLFQ-LPYNISADALSEKAGFPL 173 (1107)
Q Consensus 98 --~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~-~~~~l~~-~~~~i~~~~~~~~~~~~~ 173 (1107)
+.|.+.+++.+.... ...+.|..+.|+|++.+++.-. +|.|+|-.+.. ..|.... .+..+...
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~---------- 494 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG---------- 494 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc----------
Confidence 233333444443322 3456899999999999888765 47676643332 3343110 01111110
Q ss_pred CCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEc
Q 001287 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 207 (1107)
Q Consensus 174 ~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl 207 (1107)
-...+..+.|.+ ++. |+++..++...+|.+
T Consensus 495 -l~~~~~~l~W~~--~~~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 495 -LGDTAVSLDWRT--GDS-LVVGRSDPEHPVWYV 524 (591)
T ss_pred -cCCccccceEec--CCE-EEEEecCCCCceEEE
Confidence 013468889955 566 667766665455543
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.21 E-value=0.036 Score=38.93 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=29.8
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 001287 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWD 104 (1107)
...|...|.++.|.+++.++++++.|+.+++||
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 346788999999999989999999999999996
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.93 E-value=4.2 Score=47.55 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=29.9
Q ss_pred EEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe
Q 001287 596 RAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS 636 (1107)
Q Consensus 596 ~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~ 636 (1107)
+..+....+.|.++.|+.+.. |++-..||.|+++|+.+..
T Consensus 73 l~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 73 LSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred eEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce
Confidence 344444448999999998765 4566689999999998665
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.91 E-value=0.069 Score=40.72 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=30.7
Q ss_pred ecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001287 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 601 ~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~ 635 (1107)
.....|.+++|||...+||+|+.+|.|.|+.+...
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 34567999999999999999999999999998544
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=4.6 Score=46.77 Aligned_cols=203 Identities=14% Similarity=0.149 Sum_probs=127.7
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeC---CCcEEEEEcCCCeee
Q 001287 36 ATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLA 111 (1107)
Q Consensus 36 ~~i~~lafsp~~~-~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~---d~~I~vWDl~s~~~~ 111 (1107)
.....+++++.+. ..+....++.|.+.|.....+.....-...-..++|++++..+..+.. ++.+.+-|-.++.++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 3455688888888 444455569999999755544432222225678899999887777665 688999999999888
Q ss_pred eeeccCCCeEEEEEecCCCEEEEEc-CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 112 CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 112 ~~~~~~~~Vt~l~~~~~~~~l~~g~-~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
....-...-..++++|+++.+++.. .++.|.+.+... ..+.+ +. .. ...........+.+.| ++
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~--~~v~~-~~--~~--------~~~~~~~~P~~i~v~~--~g 218 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG--NSVVR-GS--VG--------SLVGVGTGPAGIAVDP--DG 218 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC--cceec-cc--cc--------cccccCCCCceEEECC--CC
Confidence 7754332338999999999888887 567777776442 22221 00 00 0000113456777766 56
Q ss_pred CEEEEEECC---CeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 191 NRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 191 ~~ll~~~~d---g~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
.++.+.... +.+...|..++.+...... .+. . ....+. .+|+|..+++
T Consensus 219 ~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~-------------~~~--------------~-~~~~v~-~~p~g~~~yv 269 (381)
T COG3391 219 NRVYVANDGSGSNNVLKIDTATGNVTATDLP-------------VGS--------------G-APRGVA-VDPAGKAAYV 269 (381)
T ss_pred CEEEEEeccCCCceEEEEeCCCceEEEeccc-------------ccc--------------C-CCCcee-ECCCCCEEEE
Confidence 655554444 5888888888777654211 000 0 122233 3599999888
Q ss_pred EEcC-CcEEEEeCCCC
Q 001287 268 GYID-GDILLWNTSTT 282 (1107)
Q Consensus 268 g~~d-G~I~lWd~~~~ 282 (1107)
.... +.+.+-|..+.
T Consensus 270 ~~~~~~~V~vid~~~~ 285 (381)
T COG3391 270 ANSQGGTVSVIDGATD 285 (381)
T ss_pred EecCCCeEEEEeCCCC
Confidence 8554 77887777654
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.63 E-value=2.5 Score=46.94 Aligned_cols=194 Identities=9% Similarity=0.020 Sum_probs=101.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcce-eeeC--CC---CCCEEEEEEEeCCCEEEEEeC---------
Q 001287 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLIS--PS---QLPYKNLEFLQNQGFLISITN--------- 96 (1107)
Q Consensus 32 ~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~-~~~~--~h---~~~V~~l~fs~d~~~L~S~s~--------- 96 (1107)
+..|+.++++..-..+.+|++.... +++++.+.... .... .. ...-..+...|+|.+.++...
T Consensus 62 ~~~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~ 139 (307)
T COG3386 62 FPSPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEE 139 (307)
T ss_pred EECCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCcccc
Confidence 4566666665544445555444332 55566533322 2222 11 124556777888777666554
Q ss_pred CCcEEEEEcC-CCeeeeeecc-CCCeEEEEEecCCCEEEEEcCC-CcEEEEEeecCCCceeec-ceeecccccccccCCC
Q 001287 97 DNEIQVWSLE-SRSLACCLKW-ESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQL-PYNISADALSEKAGFP 172 (1107)
Q Consensus 97 d~~I~vWDl~-s~~~~~~~~~-~~~Vt~l~~~~~~~~l~~g~~d-g~V~vw~~d~~~~~l~~~-~~~i~~~~~~~~~~~~ 172 (1107)
...=.||-+. .+.......- -..-+.++|+|+++.|++.+.. +.|+-++++..++..... .+.+...
T Consensus 140 ~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--------- 210 (307)
T COG3386 140 RPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE--------- 210 (307)
T ss_pred CCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC---------
Confidence 1112466555 4444444322 3455689999999999999876 544444444211111110 0000000
Q ss_pred CCCCCCeEEEEcccCCCCCEEEEEECCC-eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001287 173 LLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1107)
Q Consensus 173 ~~~~~~V~~v~f~P~~~~~~ll~~~~dg-~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1107)
..+..-+++. ..+|.+-+++..+| .|.+|+.+ ++.+..... + ...
T Consensus 211 --~~G~PDG~~v--DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---------P--------------------~~~ 256 (307)
T COG3386 211 --EPGLPDGMAV--DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---------P--------------------VKR 256 (307)
T ss_pred --CCCCCCceEE--eCCCCEEEecccCCceEEEECCC-CcEEEEEEC---------C--------------------CCC
Confidence 1133333344 44677443444454 88888888 544433211 1 367
Q ss_pred eeEEEeecCCCCEEEEEEc
Q 001287 252 ISALCWASSSGSILAVGYI 270 (1107)
Q Consensus 252 Vtsl~w~spdg~~l~sg~~ 270 (1107)
++++||..++.+.|+..+.
T Consensus 257 ~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 257 PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CccceEeCCCcCEEEEEec
Confidence 8899988888777766554
No 374
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.59 E-value=4.2 Score=43.52 Aligned_cols=176 Identities=11% Similarity=0.086 Sum_probs=103.8
Q ss_pred ccccceeeeecCCCCCeEE--EEEcCCCCEEEEEECCC--cEEEEeCCCcceeeeCC--CCCCEEEEEEEeCCCEEEEEe
Q 001287 22 ADLNLRIAVHYGIPATASI--LAFDHIQRLLAIATLDG--RIKVIGGDGIEGLLISP--SQLPYKNLEFLQNQGFLISIT 95 (1107)
Q Consensus 22 ~~~~~~~~~~~G~~~~i~~--lafsp~~~~LA~Gs~dg--~I~iw~~~~~~~~~~~~--h~~~V~~l~fs~d~~~L~S~s 95 (1107)
..+.+++...|.|+...-. +.|..++.++-+.+.-| .|+.+++.+.++..... ...==..++...| .|.-.+
T Consensus 29 ~~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT 106 (264)
T PF05096_consen 29 PVYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT 106 (264)
T ss_dssp -EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE
T ss_pred ceeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE
Confidence 3456788888888887654 78877777777766665 68889988766553332 2222233444433 455544
Q ss_pred -CCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCC
Q 001287 96 -NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1107)
Q Consensus 96 -~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1107)
.++...+||..+-+.+..+..++.=..++ .+++.|+..+....+ +-+|..+-+.... ..+.... +
T Consensus 107 Wk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L--~~~dP~~f~~~~~-i~V~~~g--~------- 172 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRL--YFLDPETFKEVRT-IQVTDNG--R------- 172 (264)
T ss_dssp SSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEE--EEE-TTT-SEEEE-EE-EETT--E-------
T ss_pred ecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccce--EEECCcccceEEE-EEEEECC--E-------
Confidence 58899999999999998888877777777 467778887666655 5555543333321 2222111 0
Q ss_pred CCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe
Q 001287 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 175 ~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~ 216 (1107)
....+.-+.|. +|...+=......|...|..++++....
T Consensus 173 pv~~LNELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 173 PVSNLNELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp E---EEEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred ECCCcEeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 01345566663 5665666777778888999999887654
No 375
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=5.7 Score=46.03 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=104.5
Q ss_pred CeEEEEEcCCCCEEEEEECC-CcEEEEeCCCcceeeeCCCC-CCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCeeeee
Q 001287 37 TASILAFDHIQRLLAIATLD-GRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACC 113 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~d-g~I~iw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~~~~~ 113 (1107)
.+.-+++.|++..+.+.... ..+...+...........-. ..-..+.+++.+..+..... ++.|.+-|..+....+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 55668888888555444322 24444444311111111111 33456788888776655554 58899999999988888
Q ss_pred eccCCCeEEEEEecCCCEEEEEcCC-CcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCE
Q 001287 114 LKWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1107)
Q Consensus 114 ~~~~~~Vt~l~~~~~~~~l~~g~~d-g~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1107)
.........++++++++.++++... +.-.++.++..++++... ++... . ...+++.| +++.
T Consensus 112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~---~~vG~------------~-P~~~a~~p--~g~~ 173 (381)
T COG3391 112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT---IPVGN------------T-PTGVAVDP--DGNK 173 (381)
T ss_pred eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE---EecCC------------C-cceEEECC--CCCe
Confidence 8666578889999999999999874 344667777776777653 33211 2 38899988 6775
Q ss_pred EEEEE-CCCeEEEEEccCCEEEE
Q 001287 193 VLIAY-ENALVILWDVSEAQIIF 214 (1107)
Q Consensus 193 ll~~~-~dg~V~vwdl~~~~~~~ 214 (1107)
++++. .++.|.+.|.....+..
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceec
Confidence 55554 78899999977766553
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.56 E-value=0.078 Score=54.21 Aligned_cols=109 Identities=10% Similarity=0.206 Sum_probs=68.2
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeee-ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeeccccccccc
Q 001287 91 LISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 91 L~S~s~d~~I~vWDl~s~~~~~~~-~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
|...+.++.|+-.++...+..... .....- +.+...+.-+++|..+|.|++|++... +.+... +..-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~-g~~~d~---~~s~------ 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLE-GAHSDR---VCSG------ 100 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCcc-chHHHh---hhcc------
Confidence 555667888888887666443222 111111 344445678999999999999998732 222211 1111
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCC
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~ 218 (1107)
...|.++-..- .++.+..++..+|.|+.|++.-.+.+.+.++
T Consensus 101 ------~e~i~~~Ip~~-~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 101 ------EESIDLGIPNG-RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred ------cccceeccccc-cccceeEEeccCCceeeeccccCceeeeecc
Confidence 13344444432 3555688999999999999999988877665
No 377
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.47 E-value=5.1 Score=44.48 Aligned_cols=203 Identities=12% Similarity=0.071 Sum_probs=112.3
Q ss_pred EEEEcCCCCEEEEEE--CCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC-CCeeeeee--
Q 001287 40 ILAFDHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCL-- 114 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs--~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~-s~~~~~~~-- 114 (1107)
.++++.+++++.+-- -...|-|.|+...+++.+..-.+.+.-.- +.+ ..+.+.|.||.+.-..+. .|+.....
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP-~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYP-SGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEE-EET-TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEe-cCC-CceEEEecCCceEEEEECCCCCEeEeecc
Confidence 468888888887753 33568888887777765554444222221 233 457899999999999887 44443222
Q ss_pred -ccC--CCe-EEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccc-cccccCCCCCCCCCeEEEEcccCCC
Q 001287 115 -KWE--SNI-TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA-LSEKAGFPLLSHQPVVGVLPHPNSS 189 (1107)
Q Consensus 115 -~~~--~~V-t~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~-~~~~~~~~~~~~~~V~~v~f~P~~~ 189 (1107)
.+. .++ ..=++...+.+++--+-+|.|+-.++..+.-++.. ++.+.... ....+ .++.-.-+++|+.
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~W-----rPGG~Q~~A~~~~-- 248 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDAEKADGW-----RPGGWQLIAYHAA-- 248 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-EEESS-HHHHHTTE-----EE-SSS-EEEETT--
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-cccccCccccccCc-----CCcceeeeeeccc--
Confidence 111 122 22234455566666788898888777755433332 34332211 00000 0133344666653
Q ss_pred CCEEEEEECC--------C--eEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeec
Q 001287 190 GNRVLIAYEN--------A--LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1107)
Q Consensus 190 ~~~ll~~~~d--------g--~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~s 259 (1107)
.++|.+.-.. + .|-++|+.+++.+..... +.++.++.- +
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l------------------------------~~~~~Si~V-s 297 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL------------------------------EHPIDSIAV-S 297 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE------------------------------EEEESEEEE-E
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC------------------------------CCccceEEE-c
Confidence 3344443221 1 567778888877655432 345667774 3
Q ss_pred CCCC-EEEEEE-cCCcEEEEeCCCCC
Q 001287 260 SSGS-ILAVGY-IDGDILLWNTSTTA 283 (1107)
Q Consensus 260 pdg~-~l~sg~-~dG~I~lWd~~~~~ 283 (1107)
.+.+ .|++.. .+|.|.+||..+++
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT--
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 5555 565544 57899999999874
No 378
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.46 E-value=0.012 Score=67.80 Aligned_cols=163 Identities=13% Similarity=0.197 Sum_probs=105.8
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEE----CCCcEEEEeCCCc------ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEE
Q 001287 33 GIPATASILAFDH-IQRLLAIAT----LDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1107)
Q Consensus 33 G~~~~i~~lafsp-~~~~LA~Gs----~dg~I~iw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~ 101 (1107)
|+-..-+++||.+ |...||.|- .|..+.|||+... ...+..+-......++|..+.+.|+++.....+.
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 4455678899987 467888884 3467999998544 2223333344667889998988999999999999
Q ss_pred EEEcCCCeeeeeeccCCCeEEEEEec-CCCEEEEEcCCCcEEEEE-eecCCCceeecceeecccccccccCCCCCCCCCe
Q 001287 102 VWSLESRSLACCLKWESNITAFSVIS-GSHFMYIGDENGLMSVIK-YDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1107)
Q Consensus 102 vWDl~s~~~~~~~~~~~~Vt~l~~~~-~~~~l~~g~~dg~V~vw~-~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1107)
+.|++........-....+..+.++| ..+|++.-. +|.|-+|| +..-+.-++. +. +. +......+
T Consensus 180 ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~----i~-~~-------~N~~~~~l 246 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI----IL-RN-------ENKKPKQL 246 (783)
T ss_pred hhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH----Hh-hC-------CCCcccce
Confidence 99987554333222334566678888 566666554 89999998 3211111111 11 11 11112469
Q ss_pred EEEEcccCCCCCEEEEEEC-CCeEEEEEccC
Q 001287 180 VGVLPHPNSSGNRVLIAYE-NALVILWDVSE 209 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~-dg~V~vwdl~~ 209 (1107)
..++|.|...|. +++... .++|+++|+..
T Consensus 247 ~~~aycPtrtgl-la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 247 FALAYCPTRTGL-LAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeEEeccCCcch-hhhhccCcceEEEecccc
Confidence 999999998886 555555 56899999764
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=2.7 Score=48.26 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=86.4
Q ss_pred EEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCe-------EEEeccCceEEEEEecCCC
Q 001287 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS-------LAVGNEFGLVYIYNLNGSL 569 (1107)
Q Consensus 497 ~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~-------Lasg~~dg~V~vw~~~~~~ 569 (1107)
+|.++..-..++=-|+..++.. -+++-|.. |+-+.+.|+... =++|-.+..|.=|+.+-..
T Consensus 348 il~~~~~~~~l~klDIE~GKIV-----------eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV-----------EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred EeeCCCCcCcceeeecccceee-----------eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence 4445555556777788877755 22333322 667777776532 2346667777777766432
Q ss_pred CCccceeeccCcCcceecccCCcceeEEEEeec----CcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCC
Q 001287 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLV----NSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1107)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h----~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~ 645 (1107)
.. .+..-..| ...-.|.+-..+| ++|+|+.+|.|++||-.+.... ..++
T Consensus 416 ~~-----------------------kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK---TAlP 468 (644)
T KOG2395|consen 416 KN-----------------------KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK---TALP 468 (644)
T ss_pred cc-----------------------eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh---hccc
Confidence 11 01111122 2234455555566 8999999999999998543333 4678
Q ss_pred CCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeC
Q 001287 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1107)
Q Consensus 646 ~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~ 699 (1107)
+...+|..+.-+ .++.+++ |+.+..+.++|.
T Consensus 469 gLG~~I~hVdvt----------------------adGKwil-~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 469 GLGDAIKHVDVT----------------------ADGKWIL-ATCKTYLLLIDT 499 (644)
T ss_pred ccCCceeeEEee----------------------ccCcEEE-EecccEEEEEEE
Confidence 899999999888 3466554 555667777774
No 380
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.15 E-value=18 Score=43.88 Aligned_cols=113 Identities=11% Similarity=0.155 Sum_probs=67.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeccCC--CeE---EEEE-----ecCCCEEEEEcCCCcEEEEEeecCCCceeecc
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCLKWES--NIT---AFSV-----ISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~--~Vt---~l~~-----~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~ 157 (1107)
+++|+.++.++.|.-.|..+++.+-.+.... .+. +... .-.+..+++++.++. ++-+|..+|++.-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~--l~ALDa~TGk~~W~- 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDAR--LVALDAKTGKVVWS- 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCE--EEEEECCCCCEEee-
Confidence 4678888888999999999999887764322 111 1100 112457888888885 46677777887632
Q ss_pred eeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC------CCeEEEEEccCCEEEEEe
Q 001287 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1107)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~------dg~V~vwdl~~~~~~~~~ 216 (1107)
...... ..-..+.-.|.-.+.+++++.. +|.|.-+|.++++.++.+
T Consensus 146 --~~~~~~-----------~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 146 --KKNGDY-----------KAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred --cccccc-----------cccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 221110 0001112222212334666653 689999999999988765
No 381
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.96 E-value=2.9 Score=45.30 Aligned_cols=149 Identities=11% Similarity=-0.009 Sum_probs=88.7
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEE-cCCCeee-
Q 001287 37 TASILAFDHIQRLLAIAT---LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS-LESRSLA- 111 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs---~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWD-l~s~~~~- 111 (1107)
.+...|++++++.+|.-. ....++++...+.......+ ..++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688899999999887766 33455666554444333322 3788889999966555556566667773 3333322
Q ss_pred eeec---cCCCeEEEEEecCCCEEEEEc---CCCcEEEEEeecCCCc---eeecceeecccccccccCCCCCCCCCeEEE
Q 001287 112 CCLK---WESNITAFSVISGSHFMYIGD---ENGLMSVIKYDADEGK---LFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1107)
Q Consensus 112 ~~~~---~~~~Vt~l~~~~~~~~l~~g~---~dg~V~vw~~d~~~~~---l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v 182 (1107)
.... ..+.|++|.++|++.+++.-. .++.|+|-.+..+... ....+..+.. .....++.+
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-----------~~~~~v~~v 171 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-----------PLLSDVTDV 171 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-----------cccCcceee
Confidence 1222 223899999999999887665 3577766665443222 1111122211 112679999
Q ss_pred EcccCCCCCEEEEEECCC
Q 001287 183 LPHPNSSGNRVLIAYENA 200 (1107)
Q Consensus 183 ~f~P~~~~~~ll~~~~dg 200 (1107)
.|.+ ++.+++.+...+
T Consensus 172 ~W~~--~~~L~V~~~~~~ 187 (253)
T PF10647_consen 172 AWSD--DSTLVVLGRSAG 187 (253)
T ss_pred eecC--CCEEEEEeCCCC
Confidence 9966 566444444433
No 382
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=0.54 Score=58.29 Aligned_cols=151 Identities=12% Similarity=0.060 Sum_probs=91.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCcc------------------eeeeCCCCCCEEEEEEEeCCCEEEEEeCC--Cc
Q 001287 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIE------------------GLLISPSQLPYKNLEFLQNQGFLISITND--NE 99 (1107)
Q Consensus 40 ~lafsp~~~~LA~Gs~dg~I~iw~~~~~~------------------~~~~~~h~~~V~~l~fs~d~~~L~S~s~d--~~ 99 (1107)
.++.++.-.++.++...+.+.|++..... ..+..+..-++..+...+|+...+..... -.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 46777777777777777777776542211 11222334577777777776655554443 36
Q ss_pred EEEEEcCCCeee--------eee----ccCCCeEEEEEecCCCE-EEEEcCCCcEEEEEeecCCCceeecceeecccccc
Q 001287 100 IQVWSLESRSLA--------CCL----KWESNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1107)
Q Consensus 100 I~vWDl~s~~~~--------~~~----~~~~~Vt~l~~~~~~~~-l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~ 166 (1107)
|.++|+++-+.. +.. ....-+.++.|+|.-.. .++...|+.|+|..+........ .++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~----s~p----- 196 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT----SFP----- 196 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc----ccC-----
Confidence 999998664321 111 12234667777776543 45556788777766542111111 011
Q ss_pred cccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccC
Q 001287 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
-...+++|+|+| .|+++++|..+|+++-|-...
T Consensus 197 --------~t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 197 --------VTNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred --------cccceeeEEecc--ccceeeEecCCCeEEEeeccc
Confidence 115689999988 699999999999988775443
No 383
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.79 E-value=4.9 Score=41.44 Aligned_cols=124 Identities=14% Similarity=0.180 Sum_probs=72.6
Q ss_pred ecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC---c---eEEEE-EecCCCCCcc-
Q 001287 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF---G---LVYIY-NLNGSLDAKN- 573 (1107)
Q Consensus 502 s~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d---g---~V~vw-~~~~~~~~~~- 573 (1107)
...+.|.+|++....+.+++.+.+ + +.|..|.++..|.+|++--.+ . .+|+| +|.....+..
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T------v----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST------V----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc------h----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 455679999999777776666642 1 378999999999999985432 2 56776 5554321110
Q ss_pred ceeeccCcCcceecccCC-cceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE
Q 001287 574 FLFVLETKSEVHALPEGK-ISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV 637 (1107)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~ 637 (1107)
......+- .+.....+. +.+.-..-...+.++++++++|-..-|++|+.+. +.||.+.....
T Consensus 105 v~vRiaG~-~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~-l~lf~l~~~~~ 167 (215)
T PF14761_consen 105 VRVRIAGH-RVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNK-LVLFTLKYQTI 167 (215)
T ss_pred EEEEEccc-ccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCE-EEEEEEEEEEE
Confidence 00000000 001000111 1111111123477899999999766788888765 88998765544
No 384
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.76 E-value=8.7 Score=46.57 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=66.4
Q ss_pred EEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEe-ecCcCEEEEEEcCC---C
Q 001287 540 STLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS-LVNSPVRALQFTSS---G 615 (1107)
Q Consensus 540 t~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~h~~~Vt~la~sp~---~ 615 (1107)
.+..++|+...+-.|=....|--|-+...+. ++..+. ..+..|+|+..-.. .
T Consensus 31 vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPK------------------------Liwsypi~pt~iV~~~dV~~~~~~~ 86 (670)
T PF10395_consen 31 VSDDFSPDSNQIDIGISGSAISSYIIKPTPK------------------------LIWSYPISPTTIVECCDVLEKSDGK 86 (670)
T ss_pred eecccCCCCceEEEEeccchhhheecCCCcc------------------------eeEeeccCcCceEEEEEeEecCCCc
Confidence 3447788888877666666666666655421 222221 24566888876543 3
Q ss_pred CEEEEE-eCCCeEEEEEcCCCeEEE----------EeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccE
Q 001287 616 AKLAVG-FECGRVAVLDMNLLSVLF----------FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEV 684 (1107)
Q Consensus 616 ~~la~G-s~dg~V~iwd~~~~~~~~----------~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~ 684 (1107)
++.++| ++.+..++.-+..+...- ....+ ...+.|..+.|. .++..
T Consensus 87 ~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~-kl~~kvv~Ik~~----------------------~~~~~ 143 (670)
T PF10395_consen 87 KLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFEL-KLDDKVVGIKFS----------------------SDGKI 143 (670)
T ss_pred EEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEE-EcccceEEEEEe----------------------cCCCE
Confidence 567777 444445555554330000 00000 135667777777 33677
Q ss_pred EEEEcCCceEEEEeCC
Q 001287 685 IIVLFKDAKISIVGGS 700 (1107)
Q Consensus 685 L~s~s~Dg~v~v~d~~ 700 (1107)
+++....|.|.+||.+
T Consensus 144 I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 144 IYVVLENGSIQIYDFS 159 (670)
T ss_pred EEEEEcCCcEEEEecc
Confidence 9999999999999983
No 385
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.72 E-value=4 Score=42.11 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=39.6
Q ss_pred CCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEE
Q 001287 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1107)
Q Consensus 188 ~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~s 267 (1107)
.+|++.++.+..|+|...|..+++++.... ++ ...|+|+||..++-..|++
T Consensus 221 ~eG~L~Va~~ng~~V~~~dp~tGK~L~eik---------lP--------------------t~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 221 TEGNLYVATFNGGTVQKVDPTTGKILLEIK---------LP--------------------TPQITSCCFGGKNLDILYV 271 (310)
T ss_pred cCCcEEEEEecCcEEEEECCCCCcEEEEEE---------cC--------------------CCceEEEEecCCCccEEEE
Confidence 378878888888999999999998865442 22 6789999987665566655
Q ss_pred EE
Q 001287 268 GY 269 (1107)
Q Consensus 268 g~ 269 (1107)
.+
T Consensus 272 T~ 273 (310)
T KOG4499|consen 272 TT 273 (310)
T ss_pred Ee
Confidence 44
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.52 E-value=2.5 Score=51.54 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=94.5
Q ss_pred CCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEe------CCCc--EEEEEcCCCeeeeeeccCCCeEEEEEe
Q 001287 56 DGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISIT------NDNE--IQVWSLESRSLACCLKWESNITAFSVI 126 (1107)
Q Consensus 56 dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s------~d~~--I~vWDl~s~~~~~~~~~~~~Vt~l~~~ 126 (1107)
+|.+.-.+....+-+ -..+....+...++++||.+++..- .|+. |.+++... .. ..+......+.-+|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceEC
Confidence 677766554433222 1112223688999999999887776 2444 55555422 22 222222347888999
Q ss_pred cCCCEEEEEcCCCc-EEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEE-
Q 001287 127 SGSHFMYIGDENGL-MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVIL- 204 (1107)
Q Consensus 127 ~~~~~l~~g~~dg~-V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~v- 204 (1107)
|++.++++...... +++...+ ..+.+.. ..+.+.+..+ .-...|..+.|+| +|.+++... +|.|.+
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~-~~gql~~--~~vd~ge~~~------~~~g~Issl~wSp--DG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDP-ATGQLAR--TPVDASAVAS------RVPGPISELQLSR--DGVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCCceEEEecCcceEEEeccC-CCceEEE--EeccCchhhh------ccCCCcCeEEECC--CCCEEEEEE-CCEEEEE
Confidence 99888777653322 2222211 1122221 0111111100 0125699999988 798888765 455544
Q ss_pred --EEccCCEEEEEeCCccccccccccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 205 --WDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 205 --wdl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
-....+. ..+.... .+ . ......+.++.|. .++. |+++..++.-.+|.+.
T Consensus 474 ~Vvr~~~G~-~~l~~~~--~l---------------~------~~l~~~~~~l~W~-~~~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 474 VVEQTEDGQ-YALTNPR--EV---------------G------PGLGDTAVSLDWR-TGDS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred EEEeCCCCc-eeecccE--Ee---------------e------cccCCccccceEe-cCCE-EEEEecCCCCceEEEe
Confidence 2222222 1110000 00 0 0002335789997 6666 5677776766677654
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.43 E-value=7.4 Score=41.89 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=113.9
Q ss_pred cccceeeee--cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCC--CCCEEEEEEEeCCCEEEEEeCCC
Q 001287 23 DLNLRIAVH--YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS--QLPYKNLEFLQNQGFLISITNDN 98 (1107)
Q Consensus 23 ~~~~~~~~~--~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h--~~~V~~l~fs~d~~~L~S~s~d~ 98 (1107)
.+..+.... .|+...++++.|+|+.+.|.+-+..+.-.||=-...+++..-+- -..-..+++..++.+.++--.++
T Consensus 71 ~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~ 150 (316)
T COG3204 71 EYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDR 150 (316)
T ss_pred CceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcc
Confidence 344444455 78899999999999999998888777666664433333322221 22345677788877777777788
Q ss_pred cEEEEEcCCCeeee-----eec-----c-CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeec-ccccc
Q 001287 99 EIQVWSLESRSLAC-----CLK-----W-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNIS-ADALS 166 (1107)
Q Consensus 99 ~I~vWDl~s~~~~~-----~~~-----~-~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~-~~~~~ 166 (1107)
.+.+.-++....+. .+. . ......+++++....|+++=+..-+.|+.++.....+... +. .+...
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~---~~~~~~~~ 227 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH---ASLDPTAD 227 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc---cccCcccc
Confidence 88888776652211 111 1 2356789999999999999888877787776322122110 00 00000
Q ss_pred cccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCE
Q 001287 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1107)
Q Consensus 167 ~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~ 211 (1107)
+.+. ...|.++.|++. .+.+|+.+.+++.+.-.|.+..-
T Consensus 228 ~~~f-----~~DvSgl~~~~~-~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 228 RDLF-----VLDVSGLEFNAI-TNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred cceE-----eeccccceecCC-CCcEEEEecCCceEEEEecCCCe
Confidence 0000 145888999886 56667778888888888887764
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=2 Score=49.33 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=115.4
Q ss_pred CCCCeEEEEEc-CCCCEEEEEECC------CcEEEEeC-CCcceeeeCC-------CC-CCEEEEEEEeCCC-EEEEEeC
Q 001287 34 IPATASILAFD-HIQRLLAIATLD------GRIKVIGG-DGIEGLLISP-------SQ-LPYKNLEFLQNQG-FLISITN 96 (1107)
Q Consensus 34 ~~~~i~~lafs-p~~~~LA~Gs~d------g~I~iw~~-~~~~~~~~~~-------h~-~~V~~l~fs~d~~-~L~S~s~ 96 (1107)
..+.|..+++. -+.++|++|... .+|-|+.- ++.+...... |. .|-..+-...+.. .|.++..
T Consensus 275 s~~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~ 354 (644)
T KOG2395|consen 275 SEGGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGE 354 (644)
T ss_pred hhcccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCC
Confidence 34556667775 456788888653 33333332 1112111111 11 1222333333333 3445556
Q ss_pred CCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCC-------EEEEEcCCCcEEEEEeecCCC-ceeecceeecccccccc
Q 001287 97 DNEIQVWSLESRSLACCLKWESNITAFSVISGSH-------FMYIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEK 168 (1107)
Q Consensus 97 d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~-------~l~~g~~dg~V~vw~~d~~~~-~l~~~~~~i~~~~~~~~ 168 (1107)
...|.-.|++.|+++........|+-+.+.|+.+ .-++|-.+..|+-|+...+.. ++.. ..++.....
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~----~q~kqy~~k 430 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV----VQSKQYSTK 430 (644)
T ss_pred cCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee----eeccccccc
Confidence 6779999999999999998887788888888764 236788888787777654332 1111 122221111
Q ss_pred cCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEe-CCccccccccccCCCCCCCCccccCCCCCCC
Q 001287 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1107)
Q Consensus 169 ~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1107)
....|.+- +.+|. +++|+.+|-|++||-...+....+ +.
T Consensus 431 --------~nFsc~aT--T~sG~-IvvgS~~GdIRLYdri~~~AKTAlPgL----------------------------- 470 (644)
T KOG2395|consen 431 --------NNFSCFAT--TESGY-IVVGSLKGDIRLYDRIGRRAKTALPGL----------------------------- 470 (644)
T ss_pred --------cccceeee--cCCce-EEEeecCCcEEeehhhhhhhhhccccc-----------------------------
Confidence 22344444 44665 999999999999996332222111 11
Q ss_pred CCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 248 ~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
..+|+.+. .+.||.+|++.+. ..|.+-++.
T Consensus 471 -G~~I~hVd-vtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 471 -GDAIKHVD-VTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred -CCceeeEE-eeccCcEEEEecc-cEEEEEEEe
Confidence 45677777 4589999886654 556665653
No 389
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.27 E-value=3.6 Score=38.97 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCcc--------eeeeCCCCCCEEEEEEEe----CCCEEEEEeCCCcEEEEEc
Q 001287 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIE--------GLLISPSQLPYKNLEFLQ----NQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~--------~~~~~~h~~~V~~l~fs~----d~~~L~S~s~d~~I~vWDl 105 (1107)
|+.-.|+....-||.++..|+|.|++..... .+....-...|++|+-.+ ++.-++-.++...|..+|+
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 3456788888999999999999999864321 112222344677776543 2344566666888999999
Q ss_pred CCCeeeeeeccCCCeEEEEEec----CCCEEEEEcCCCcEEEEEeecCCCcee
Q 001287 106 ESRSLACCLKWESNITAFSVIS----GSHFMYIGDENGLMSVIKYDADEGKLF 154 (1107)
Q Consensus 106 ~s~~~~~~~~~~~~Vt~l~~~~----~~~~l~~g~~dg~V~vw~~d~~~~~l~ 154 (1107)
....-+-....+..|.++.+-. ..+++++| |+..|+-+|.+..++.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG---Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG---GNCSIQGFDYEGNEIF 130 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEEC---ceEEEEEeCCCCcEEE
Confidence 8876554445556777777742 34566776 5667777776544443
No 390
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.15 E-value=0.26 Score=50.54 Aligned_cols=103 Identities=11% Similarity=0.115 Sum_probs=68.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCc---ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeee-ccC-CCe
Q 001287 46 IQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWE-SNI 120 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~-~~~-~~V 120 (1107)
-..-|++|+.+|.|++|..... .-.....-+.-..-+.-..++.+..+++.++.|+.|++.-.+.+... +|. ..+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 3567899999999999987521 11111222222222222344557888889999999999999888776 444 466
Q ss_pred EEEEEecCCCEEEEE--cCCCcEEEEEeec
Q 001287 121 TAFSVISGSHFMYIG--DENGLMSVIKYDA 148 (1107)
Q Consensus 121 t~l~~~~~~~~l~~g--~~dg~V~vw~~d~ 148 (1107)
..+.++..+.++.+. +.+..++.|+++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 666666677777777 6677777777663
No 391
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.68 E-value=22 Score=41.74 Aligned_cols=114 Identities=12% Similarity=0.109 Sum_probs=70.3
Q ss_pred CeEEEEEcCCCCEEEEEE-CCC----cEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC-----------cE
Q 001287 37 TASILAFDHIQRLLAIAT-LDG----RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN-----------EI 100 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs-~dg----~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~-----------~I 100 (1107)
.+..+.++|++++||.+- ..| .|+++|+.+.+.+...-.......+.|.+|+..++....+. .|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 344688999999999874 334 49999997765543221122233499999987776666433 37
Q ss_pred EEEEcCCCeee--eee--ccCCC-eEEEEEecCCCEEEEEcCCC-c-EEEEEeecCC
Q 001287 101 QVWSLESRSLA--CCL--KWESN-ITAFSVISGSHFMYIGDENG-L-MSVIKYDADE 150 (1107)
Q Consensus 101 ~vWDl~s~~~~--~~~--~~~~~-Vt~l~~~~~~~~l~~g~~dg-~-V~vw~~d~~~ 150 (1107)
..|++.+..-- ..+ ..... ...+..+.+++++++....+ + -.+|-++...
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 88888776432 222 22223 66788899999988765433 2 3455555443
No 392
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.33 E-value=1.1 Score=51.66 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=74.0
Q ss_pred EEEEEeCCCeEEEeccCceEEE-EEec--CCC-CCccceeeccCcCcceecccCCcceeEEEEeec-CcCEEEEEEc---
Q 001287 541 TLSFCFINSSLAVGNEFGLVYI-YNLN--GSL-DAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NSPVRALQFT--- 612 (1107)
Q Consensus 541 ~l~fspd~~~Lasg~~dg~V~v-w~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h-~~~Vt~la~s--- 612 (1107)
.++.+|++.+||.+..+..|.+ ..+. ... .+...... ....+..- ...||++.|-
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~-----------------~~g~l~~~~~e~ITsi~clpl~ 68 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSIS-----------------WSGPLDDEPGECITSILCLPLS 68 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEE-----------------eeeeccCCCCCEEEEEEEEEee
Confidence 4688999999999988877766 3342 221 11111000 00001111 1356655542
Q ss_pred --------CCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccE
Q 001287 613 --------SSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEV 684 (1107)
Q Consensus 613 --------p~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~ 684 (1107)
+|...+|+|..+|.|++|.-.+. +++.-.. |..+|..+.+....... .|. ....-
T Consensus 69 s~~~s~~~~dw~~I~VG~ssG~vrfyte~G~-LL~~Q~~---h~~pV~~ik~~~~~~~~----~~~---------~~~ee 131 (415)
T PF14655_consen 69 SQKRSTGGPDWTCIAVGTSSGYVRFYTENGV-LLLSQLL---HEEPVLKIKCRSTKIPR----HPG---------DSSEE 131 (415)
T ss_pred cccccCCCCCcEEEEEEecccEEEEEeccch-HHHHHhc---CccceEEEEecccCCCC----CCc---------ccccE
Confidence 45789999999999999998654 4433233 89999999988553321 000 00133
Q ss_pred EEEEcCCceEEEEeCCC
Q 001287 685 IIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 685 L~s~s~Dg~v~v~d~~~ 701 (1107)
|+..-. +.|+++|+.+
T Consensus 132 l~ily~-~~v~~Idg~s 147 (415)
T PF14655_consen 132 LSILYP-SAVVIIDGFS 147 (415)
T ss_pred EEEEEC-CEEEEEecHH
Confidence 555555 7889999654
No 393
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.15 E-value=1.6 Score=52.20 Aligned_cols=92 Identities=7% Similarity=-0.040 Sum_probs=61.6
Q ss_pred CcEEEEeCCC-----cceeeeCCCCCCEEEEEEEeCCCEEEEEeC-CCcEEEEEcCCCee------------eeeeccCC
Q 001287 57 GRIKVIGGDG-----IEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSL------------ACCLKWES 118 (1107)
Q Consensus 57 g~I~iw~~~~-----~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~-d~~I~vWDl~s~~~------------~~~~~~~~ 118 (1107)
+.|.++|... ..++..-+=......+.++|||.+++..+. +++|.|.|+++.+. ........
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4466666544 233332233334567899999999888775 89999999988652 33333333
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 119 NITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 119 ~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
.....+|+++++...+-.-|..|-.|+++.
T Consensus 376 GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 455678888887656666788888898874
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.11 E-value=10 Score=41.12 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=68.7
Q ss_pred CEEEEEEEeCCCEEEEEe---CCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCcee
Q 001287 78 PYKNLEFLQNQGFLISIT---NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s---~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~ 154 (1107)
.+...++++++..++.+. ....+.++....... .......++.-+|++++...++...+...+++... ..+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~--~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~-~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR--PVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDS-ASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce--eeccCCccccccccCCCCEEEEEcCCCceEEEEec-CCCcce
Confidence 689999999999888877 234466665544322 22133467888999997777777766666666422 123332
Q ss_pred ecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC---CCeEEEEE
Q 001287 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWD 206 (1107)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~---dg~V~vwd 206 (1107)
......+... ..|..+.++| +|.+++.... ++.|.+--
T Consensus 102 ~~~v~~~~~~------------~~I~~l~vSp--DG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 102 PVEVDWPGLR------------GRITALRVSP--DGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred eEEecccccC------------CceEEEEECC--CCcEEEEEEecCCCCeEEEEE
Confidence 2111222111 2699999988 8999887763 34554443
No 395
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.89 E-value=5.2 Score=44.53 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=65.6
Q ss_pred cCCCCCeEEEEEEeCCCeEEEeccC-ceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEE
Q 001287 533 AGSRAPVSTLSFCFINSSLAVGNEF-GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 611 (1107)
Q Consensus 533 ~~h~~~Vt~l~fspd~~~Lasg~~d-g~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~ 611 (1107)
.+|-..-..|+||||++.|..+... +.|.-|++....-. ..+......+....+.--.++.
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~------------------~~~~~~~~~~~~~~G~PDG~~v 220 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP------------------IGGRRGFVDFDEEPGLPDGMAV 220 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc------------------cCCcceEEEccCCCCCCCceEE
Confidence 3333455789999999888777654 77777776631100 0000112333345677778899
Q ss_pred cCCCCEEEEEeCCC-eEEEEEcCCCeEEEEeecCCCCCCceEEEEEe
Q 001287 612 TSSGAKLAVGFECG-RVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1107)
Q Consensus 612 sp~~~~la~Gs~dg-~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs 657 (1107)
..+|.+.+++-.+| .|.+|+.. ++.+..... ....+++++|.
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~~t~~~Fg 263 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKRPTNPAFG 263 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEEEEEEC---CCCCCccceEe
Confidence 99998886555554 89999999 665543333 33778888888
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.47 E-value=10 Score=42.07 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=78.3
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecC
Q 001287 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 488 ~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~ 567 (1107)
.+..++++++++.+..-....-||-.....+ ..-......|++|.|.|++.+.+.+ ..|.|+.=+...
T Consensus 149 ~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~-----------~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 149 DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ-----------PHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEEE-TTS-EEEEETTSSEEEEE-TT-SS-E-----------EEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred eEEECCCCcEEEEECcccEEEEecCCCccce-----------EEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3356788988887765555667876544333 1122344689999999998876654 788887766222
Q ss_pred CCCCccceeeccCcCcceecccCCcceeEEEEee-------cCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 001287 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-------VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFF 640 (1107)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~ 640 (1107)
. ...+.. -.-.+..++|.++....|+|+. |+ -+....+++--.+
T Consensus 217 ~---------------------------~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~ 267 (302)
T PF14870_consen 217 D---------------------------GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQK 267 (302)
T ss_dssp E---------------------------EEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE
T ss_pred C---------------------------ccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceE
Confidence 1 111111 1223789999999988887765 43 3444555544333
Q ss_pred eecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEE
Q 001287 641 TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1107)
Q Consensus 641 ~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~ 697 (1107)
.......++-...+.|.. .+.-++.+.||.|.-|
T Consensus 268 ~~~~~~~~~n~~~i~f~~-----------------------~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 268 DRVGENVPSNLYRIVFVN-----------------------PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -GGGTTSSS---EEEEEE-----------------------TTEEEEE-STTEEEEE
T ss_pred CccccCCCCceEEEEEcC-----------------------CCceEEECCCcEEEEe
Confidence 333345566788899883 2346778888887655
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.14 E-value=7 Score=41.64 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=38.9
Q ss_pred EEcCCCCEEEEEECC-----CcEEEEeCCCc-c-eeeeCCCCCCEEEEEEEeCCCEEEEEe
Q 001287 42 AFDHIQRLLAIATLD-----GRIKVIGGDGI-E-GLLISPSQLPYKNLEFLQNQGFLISIT 95 (1107)
Q Consensus 42 afsp~~~~LA~Gs~d-----g~I~iw~~~~~-~-~~~~~~h~~~V~~l~fs~d~~~L~S~s 95 (1107)
.|||||++|..--.| |.|-|||.... + +-....|.-.-..+.+.+||..|+.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 589999998765554 88999998532 2 224455666777889999988777664
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.85 E-value=10 Score=47.29 Aligned_cols=122 Identities=17% Similarity=0.163 Sum_probs=72.2
Q ss_pred cCCcEEEEeCCCCceeEEEeecc---ce-------eeeee--cCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCC
Q 001287 503 HDGSVRIWDATYPVFKLICALDA---EV-------QGIEV--AGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1107)
Q Consensus 503 ~DgtIriWd~~~~~l~~~~~l~~---~~-------~~~~l--~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~ 570 (1107)
.|+.+.+||-....+..+ .++. .. .+..+ ..-...|..|.++++|.+|+..|..|.+.+.--.....
T Consensus 40 ~d~~L~vWd~~e~~l~~~-nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~ 118 (717)
T PF10168_consen 40 RDGDLFVWDSSECCLLTV-NLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGK 118 (717)
T ss_pred eCCEEEEEECCCCEEEEE-eeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCc
Confidence 368899999776654211 1111 00 00001 12335689999999999999999988777665432111
Q ss_pred CccceeeccCcCcceecccCCcceeEEE-------EeecCcCEEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCeE
Q 001287 571 AKNFLFVLETKSEVHALPEGKISLCRAV-------FSLVNSPVRALQFTSS---GAKLAVGFECGRVAVLDMNLLSV 637 (1107)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~h~~~Vt~la~sp~---~~~la~Gs~dg~V~iwd~~~~~~ 637 (1107)
.+.+ . .++. ...|... ...+...|..+.|+|. +.+|++=+.|+++++||+..+.-
T Consensus 119 ~~~~--~-~g~~---------~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 119 NGEF--E-DGKK---------EINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred cccc--c-CCCc---------ceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 0000 0 0000 0011111 1234568999999996 48999999999999999976543
No 399
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=90.65 E-value=0.16 Score=37.71 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhh
Q 001287 1062 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1100 (1107)
Q Consensus 1062 ~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 1100 (1107)
+|+.+|.+||=.+-+.+.-=..+|+.+..+|++||.+|-
T Consensus 1 ekil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred ChHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478899999998888766667799999999999999973
No 400
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.53 E-value=9.4 Score=47.62 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEE-----EeCCC------ccee----------eeCCCCCCEEEEEEEeC---CCEE
Q 001287 36 ATASILAFDHIQRLLAIATLDGRIKV-----IGGDG------IEGL----------LISPSQLPYKNLEFLQN---QGFL 91 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~dg~I~i-----w~~~~------~~~~----------~~~~h~~~V~~l~fs~d---~~~L 91 (1107)
-.|.-+.++|+|++||..+..|...+ |+..+ .++. +...+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 46888999999999999998775544 33211 1111 22345668999999986 5899
Q ss_pred EEEeCCCcEEEEEcCCC
Q 001287 92 ISITNDNEIQVWSLESR 108 (1107)
Q Consensus 92 ~S~s~d~~I~vWDl~s~ 108 (1107)
+.-++|++|++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999764
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.28 E-value=4.8 Score=47.18 Aligned_cols=154 Identities=13% Similarity=0.164 Sum_probs=82.4
Q ss_pred CEEEEEEEeCCCEEEEEe--CCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCC----CEEEEEcCCCcEEEEEeec---
Q 001287 78 PYKNLEFLQNQGFLISIT--NDNEIQVWSLESRSLACCLKWESNITAFSVISGS----HFMYIGDENGLMSVIKYDA--- 148 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s--~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~----~~l~~g~~dg~V~vw~~d~--- 148 (1107)
||..|+|......+++.= .+|++++=|- ..++.-..|..++|.|-+ ..++..--...|.||.+-.
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 788888876544444432 2344443331 223334568889998763 3444444556689999863
Q ss_pred CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC--EEEEEeCCcccccccc
Q 001287 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKDG 226 (1107)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~--~~~~~~g~~~~~~~~~ 226 (1107)
+.+++.-. . .. +..+.+ +--..+..|||. ...|++-.....=+++++... ++..-...
T Consensus 95 e~~K~l~s-Q--tc-Ei~e~~------pvLpQGCVWHPk--~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-------- 154 (671)
T PF15390_consen 95 ERNKLLMS-Q--TC-EIREPF------PVLPQGCVWHPK--KAILTVLTARDVSVLPSVHCDSSRVKADIKT-------- 154 (671)
T ss_pred ccccceee-e--ee-eccCCc------ccCCCcccccCC--CceEEEEecCceeEeeeeeeCCceEEEeccC--------
Confidence 22333211 0 00 000110 012356789995 443444444444456665543 32211111
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEc-CCcEEEEeCC
Q 001287 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTS 280 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~-dG~I~lWd~~ 280 (1107)
.+.|.|+||. +||++|+++-. .=.-++||-.
T Consensus 155 ----------------------~G~IhCACWT-~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 155 ----------------------SGLIHCACWT-KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ----------------------CceEEEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence 6789999998 89998877643 3345778754
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.20 E-value=42 Score=39.01 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCEEEEEECCCcEEEEeCCCc-----ceeeeCCCCCCEEEEEEE
Q 001287 47 QRLLAIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFL 85 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~~~-----~~~~~~~h~~~V~~l~fs 85 (1107)
...|++|+.+|+++||..... .++++..-+.||-.|+.-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G 80 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECG 80 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEec
Confidence 459999999999999987332 355666777888888763
No 403
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.17 E-value=34 Score=38.88 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=42.6
Q ss_pred EEcCCCCEEEEEEC-CCc--EEEEeCCCcceeeeCCCCCC-EEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccC
Q 001287 42 AFDHIQRLLAIATL-DGR--IKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE 117 (1107)
Q Consensus 42 afsp~~~~LA~Gs~-dg~--I~iw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~ 117 (1107)
+|.++|+.|..++. ||. +++.|+.+.+..-+..+.+. .-....+++...|+-+..+..|+--|+++++....+..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46888966555544 555 55556777777766655432 224666788888888887889999999998765555433
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.60 E-value=18 Score=44.52 Aligned_cols=158 Identities=15% Similarity=0.218 Sum_probs=98.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeee---------C--------------CCCCCEEEEEEE--eC
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI---------S--------------PSQLPYKNLEFL--QN 87 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~---------~--------------~h~~~V~~l~fs--~d 87 (1107)
|.....+|+.= ..+|.+|. .+.|+||+.+....... . +-...|..|... -+
T Consensus 38 gfKNNLtalsq---~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~ 113 (717)
T PF08728_consen 38 GFKNNLTALSQ---RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGG 113 (717)
T ss_pred ccccceeEEec---CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCC
Confidence 34444444432 77888876 68999999854332110 0 011234555443 34
Q ss_pred CCEEEEEeCCCcEEEEEcCCC-----------e---------eeeeeccCCCeEEEEEe--cCCCEEEEEcCCCcEEEEE
Q 001287 88 QGFLISITNDNEIQVWSLESR-----------S---------LACCLKWESNITAFSVI--SGSHFMYIGDENGLMSVIK 145 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~-----------~---------~~~~~~~~~~Vt~l~~~--~~~~~l~~g~~dg~V~vw~ 145 (1107)
...|+.+.+||.|.+|.+++- . +.-.+......+.+++. ...+++|+++....|.|+.
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 567999999999999976221 0 01112334578899998 8889999999999999998
Q ss_pred eecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCC---CC-EEEEEECCCeEEEEEcc
Q 001287 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS---GN-RVLIAYENALVILWDVS 208 (1107)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~---~~-~ll~~~~dg~V~vwdl~ 208 (1107)
+.....+... .+.+ .+...|-+|+|-+... |. .|++++-.|.+.+|++.
T Consensus 194 f~l~~~r~~~----~~s~----------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 194 FALVDERFYH----VPSH----------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred Eecccccccc----cccc----------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 8763222211 1111 1225688889877542 22 67788899999998873
No 405
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.04 E-value=7 Score=41.68 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=44.6
Q ss_pred EEEeCCCeEEEeccC-----ceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCE
Q 001287 543 SFCFINSSLAVGNEF-----GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1107)
Q Consensus 543 ~fspd~~~Lasg~~d-----g~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~ 617 (1107)
.|||||++|...-.| |.|-||+.... |+-+..+..|.-.-+.+.+.+||+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~------------------------fqrvgE~~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG------------------------FQRVGEFSTHGIGPHEVTLMADGRT 175 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc------------------------cceecccccCCcCcceeEEecCCcE
Confidence 599999998765443 88999998753 4456677788878888999999999
Q ss_pred EEEEeC
Q 001287 618 LAVGFE 623 (1107)
Q Consensus 618 la~Gs~ 623 (1107)
+++...
T Consensus 176 lvvanG 181 (366)
T COG3490 176 LVVANG 181 (366)
T ss_pred EEEeCC
Confidence 888654
No 406
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.77 E-value=6.5 Score=48.13 Aligned_cols=185 Identities=10% Similarity=0.034 Sum_probs=103.2
Q ss_pred ccccCCCCcEEEEEecCCcEEEEeCCCCceeE----EEeeccceeee-------eecCCCCCeEEEEEEe--CCCeEEEe
Q 001287 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKL----ICALDAEVQGI-------EVAGSRAPVSTLSFCF--INSSLAVG 554 (1107)
Q Consensus 488 ~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~----~~~l~~~~~~~-------~l~~h~~~Vt~l~fsp--d~~~Lasg 554 (1107)
+.+.+. +++|+.|. .+.|.||+.......+ ...+....... ....-...|..|...- +...|+.+
T Consensus 43 Ltalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c 120 (717)
T PF08728_consen 43 LTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLC 120 (717)
T ss_pred eeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEE
Confidence 334555 66777766 6789999986544321 11111111000 0001222566665554 44578999
Q ss_pred ccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEc--CCCCEEEEEeCCCeEEEEEc
Q 001287 555 NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT--SSGAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 555 ~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~s--p~~~~la~Gs~dg~V~iwd~ 632 (1107)
.+||.|.+|....-....+.. .............++...+ .....++.|++. ...++||+++....|.||-.
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~~-----~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIERF-----SEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHhh-----ccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 999999999765421000000 0000000000111222222 245689999999 88899999999888888766
Q ss_pred CCC--eEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCcc-EEEEEcCCceEEEEeC
Q 001287 633 NLL--SVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEE-VIIVLFKDAKISIVGG 699 (1107)
Q Consensus 633 ~~~--~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~-~L~s~s~Dg~v~v~d~ 699 (1107)
... +... ..-..|..-|-++.|-.+... +.+. .|++++=.|.|.+|+.
T Consensus 195 ~l~~~r~~~--~~s~~~~hNIP~VSFl~~~~d-----------------~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYH--VPSHQHSHNIPNVSFLDDDLD-----------------PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecccccccc--ccccccccCCCeeEeecCCCC-----------------CccceEEEEEeccCcEEEEEE
Confidence 542 2111 111125566888889876543 3333 6778888999998886
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.95 E-value=66 Score=38.26 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=65.9
Q ss_pred cEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCC--eEEEEEEeCCCeEEEeccCceEEEEEecCCCCCcc
Q 001287 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP--VSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN 573 (1107)
Q Consensus 496 ~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~--Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~ 573 (1107)
.+||.-+ ...|.+|.+.........-+-.+..++ . ...+ -+.+-|+|....|++-.....=.+++......
T Consensus 74 aLLAVQH-kkhVtVWqL~~s~~e~~K~l~sQtcEi--~-e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--- 146 (671)
T PF15390_consen 74 ALLAVQH-KKHVTVWQLCPSTTERNKLLMSQTCEI--R-EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--- 146 (671)
T ss_pred ceEEEec-cceEEEEEeccCccccccceeeeeeec--c-CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc---
Confidence 3555544 567999987633211100000011111 1 1112 25577999999998877665555666554321
Q ss_pred ceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeEE
Q 001287 574 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF-ECGRVAVLDMNLLSVL 638 (1107)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs-~dg~V~iwd~~~~~~~ 638 (1107)
+.... ..-.+-|.|-+|.+||++|+++- ..-.-+|||-..+...
T Consensus 147 --------------------rVkaD-i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~ 191 (671)
T PF15390_consen 147 --------------------RVKAD-IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLH 191 (671)
T ss_pred --------------------eEEEe-ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhh
Confidence 11122 24578899999999998877653 2445789998776443
No 408
>PHA02713 hypothetical protein; Provisional
Probab=87.78 E-value=5.3 Score=48.81 Aligned_cols=57 Identities=11% Similarity=0.193 Sum_probs=32.7
Q ss_pred cCCCCcEEEEEecCC-----cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCc
Q 001287 491 CHSVDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG 558 (1107)
Q Consensus 491 ~s~~~~~laTgs~Dg-----tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg 558 (1107)
..-++.+++.|+.++ +|..||..+.....+..++.. ..+| ..+ .-++...+.||.++
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-----r~~~----~~~--~~~g~IYviGG~~~ 409 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-----LSSY----GMC--VLDQYIYIIGGRTE 409 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-----cccc----cEE--EECCEEEEEeCCCc
Confidence 344677999998765 378899877665532221110 1111 112 23788888888764
No 409
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.53 E-value=18 Score=34.38 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=77.3
Q ss_pred EEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcC-----CC
Q 001287 541 TLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-----SG 615 (1107)
Q Consensus 541 ~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp-----~~ 615 (1107)
.-.|......|+.+..-|.|.|++.......... ...-..+-..+..|++|+--+ ..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~------------------~~~~i~~LNin~~italaaG~l~~~~~~ 64 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR------------------QDSDISFLNINQEITALAAGRLKPDDGR 64 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc------------------ccCceeEEECCCceEEEEEEecCCCCCc
Confidence 3456656667888999999999987654321100 001122334567788886554 34
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEE
Q 001287 616 AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKIS 695 (1107)
Q Consensus 616 ~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~ 695 (1107)
..|.+|+... +..||+....-+|. ...+..|.++.+...... ..+ |+..+.+.+|.
T Consensus 65 D~LliGt~t~-llaYDV~~N~d~Fy----ke~~DGvn~i~~g~~~~~------------------~~~-l~ivGGncsi~ 120 (136)
T PF14781_consen 65 DCLLIGTQTS-LLAYDVENNSDLFY----KEVPDGVNAIVIGKLGDI------------------PSP-LVIVGGNCSIQ 120 (136)
T ss_pred CEEEEeccce-EEEEEcccCchhhh----hhCccceeEEEEEecCCC------------------CCc-EEEECceEEEE
Confidence 6889998865 89999998877743 346789999999855332 133 55555566888
Q ss_pred EEeCCC
Q 001287 696 IVGGSS 701 (1107)
Q Consensus 696 v~d~~~ 701 (1107)
=+|.+-
T Consensus 121 Gfd~~G 126 (136)
T PF14781_consen 121 GFDYEG 126 (136)
T ss_pred EeCCCC
Confidence 888653
No 410
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.30 E-value=67 Score=37.62 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=66.4
Q ss_pred cccCCCCcEEEEE-ecCCc----EEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCc-----
Q 001287 489 TKCHSVDRVYLAG-YHDGS----VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG----- 558 (1107)
Q Consensus 489 ~~~s~~~~~laTg-s~Dgt----IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg----- 558 (1107)
..++|+++++|-+ +..|. |++.|+.++....- . +.. ..-..+.|.+|++.|+....+.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-----~-----i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-----G-----IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-----E-----EEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-----c-----ccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 3689999988866 44554 99999998864311 0 010 0123499999988776554332
Q ss_pred ----e--EEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcC--EEEEEEcCCCCEEEEEeCC----Ce
Q 001287 559 ----L--VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP--VRALQFTSSGAKLAVGFEC----GR 626 (1107)
Q Consensus 559 ----~--V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~--Vt~la~sp~~~~la~Gs~d----g~ 626 (1107)
. |..|++.+...+ -...|...... ...+..++|+++|++.... ..
T Consensus 197 ~~~~~~~v~~~~~gt~~~~-----------------------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSE-----------------------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG------------------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred cCCCCcEEEEEECCCChHh-----------------------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 2 555555443221 12344444333 5678899999998765433 34
Q ss_pred EEEEEcCCC
Q 001287 627 VAVLDMNLL 635 (1107)
Q Consensus 627 V~iwd~~~~ 635 (1107)
|++.|+..+
T Consensus 254 v~~~d~~~~ 262 (414)
T PF02897_consen 254 VYLLDLDDG 262 (414)
T ss_dssp EEEEECCCT
T ss_pred EEEEecccc
Confidence 788888764
No 411
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=2.5 Score=52.82 Aligned_cols=148 Identities=11% Similarity=0.035 Sum_probs=90.8
Q ss_pred CeEEEEEcCCCCEEEEEECCC--cEEEEeCCCcc------eeeeCC------CCCCEEEEEEEeCCC-EEEEEeCCCcEE
Q 001287 37 TASILAFDHIQRLLAIATLDG--RIKVIGGDGIE------GLLISP------SQLPYKNLEFLQNQG-FLISITNDNEIQ 101 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg--~I~iw~~~~~~------~~~~~~------h~~~V~~l~fs~d~~-~L~S~s~d~~I~ 101 (1107)
.|..++..+|+.+.++-.... .|+.||+...+ ...+.. ...-+.++.|.|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 355677778877776655444 77888874321 111111 223456777777532 245556788888
Q ss_pred EEEcCCCe-eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 102 VWSLESRS-LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 102 vWDl~s~~-~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
|.-+.... .+.++.....++|++|+|.++.+++|..+|++..+.... .+.. .++... ......|.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l---eik~---~ip~Pp--------~~e~yrvl 247 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL---EIKS---EIPEPP--------VEENYRVL 247 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc---ceee---cccCCC--------cCCCccee
Confidence 88775543 344456677899999999999999999999886655432 1111 122211 11136799
Q ss_pred EEEcccCCCCCEEEEEECCCe
Q 001287 181 GVLPHPNSSGNRVLIAYENAL 201 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~ 201 (1107)
+|+|-- ... +++.|.+++
T Consensus 248 ~v~Wl~--t~e-flvvy~n~t 265 (1405)
T KOG3630|consen 248 SVTWLS--TQE-FLVVYGNVT 265 (1405)
T ss_pred EEEEec--cee-EEEEecccc
Confidence 999932 333 666666654
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.40 E-value=2.5 Score=31.37 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=27.5
Q ss_pred cCEEEEEEcCCC---CEEEEEeCCCeEEEEEcCCC
Q 001287 604 SPVRALQFTSSG---AKLAVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 604 ~~Vt~la~sp~~---~~la~Gs~dg~V~iwd~~~~ 635 (1107)
+.|.++.|||.. .+||..-..|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999999854 59999999999999999963
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.36 E-value=3.4 Score=43.64 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=46.3
Q ss_pred EEeCCCEEEEEeCCCcEEEEEcCCCeeeeee---------------ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 84 FLQNQGFLISITNDNEIQVWSLESRSLACCL---------------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 84 fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~---------------~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
+..++.+|+..+.+|.+.|||+.+++.+..- .....|+.+.+..+|.-+ +...+|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi-V~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI-VTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE-EEEeCCCEEEecccc
Confidence 4456789999999999999999998764322 133568888888666543 445667777777664
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.02 E-value=1.1e+02 Score=38.83 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeE---------EEEEe----------------cCCCEEEEEcCCCcEE
Q 001287 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNIT---------AFSVI----------------SGSHFMYIGDENGLMS 142 (1107)
Q Consensus 88 ~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt---------~l~~~----------------~~~~~l~~g~~dg~V~ 142 (1107)
+..|+.++.++.|.-.|..+++.+-.+.....+. .+++. .....+++++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~-- 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR-- 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe--
Confidence 5678888889999999999999887775433221 12221 13458889999994
Q ss_pred EEEeecCCCceeecceeecccc---cccccCCCCCCCCCeEEEEcccCCCCCEEEEEEC----------CCeEEEEEccC
Q 001287 143 VIKYDADEGKLFQLPYNISADA---LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVSE 209 (1107)
Q Consensus 143 vw~~d~~~~~l~~~~~~i~~~~---~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~----------dg~V~vwdl~~ 209 (1107)
++-+|..+|+.... +..+. +.+.++... ..-..+.-.|.-.+..+++|+. +|.|+-+|.++
T Consensus 272 LiALDA~TGk~~W~---fg~~G~vdl~~~~g~~~---~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 272 LIALDADTGKLCED---FGNNGTVDLTAGMGTTP---PGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred EEEEECCCCCEEEE---ecCCCceeeecccCcCC---CcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence 56777777877632 32211 111111100 0011222223222345777753 68999999999
Q ss_pred CEEEEEeC
Q 001287 210 AQIIFVGG 217 (1107)
Q Consensus 210 ~~~~~~~g 217 (1107)
++.++.+.
T Consensus 346 Gkl~W~~~ 353 (764)
T TIGR03074 346 GALVWAWD 353 (764)
T ss_pred CcEeeEEe
Confidence 99988653
No 415
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=85.71 E-value=8.6 Score=48.74 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=92.5
Q ss_pred CCEEEEEECC---------CcEEEEeCCC-------------cceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 001287 47 QRLLAIATLD---------GRIKVIGGDG-------------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 47 ~~~LA~Gs~d---------g~I~iw~~~~-------------~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWD 104 (1107)
..+||+|+.- |+|.||++-. ...+...+-.++|+.++=.. ++|+++. .-.|.||+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~--G~l~~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVR--GHLLSSQ-GQKIIVRK 1122 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEec--cEEEEcc-CcEEEEEE
Confidence 4599999742 9999998621 12335556778998886543 4566553 55699999
Q ss_pred c-CCCeeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEE
Q 001287 105 L-ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1107)
Q Consensus 105 l-~s~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~ 183 (1107)
+ +...++-..-..-++.-.+...-.++++.|+--..|++..++.+..++....-.++ .-.++++.
T Consensus 1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~--------------~l~v~s~E 1188 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFE--------------PLNVYSTE 1188 (1366)
T ss_pred eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCc--------------hhhceeee
Confidence 9 44455443333344444555555789999999889999999876544443111111 13477777
Q ss_pred cccCCCCCEEEEEECCCeEEEEEccC
Q 001287 184 PHPNSSGNRVLIAYENALVILWDVSE 209 (1107)
Q Consensus 184 f~P~~~~~~ll~~~~dg~V~vwdl~~ 209 (1107)
|--....-.++++..++.|.+|-..-
T Consensus 1189 FLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1189 FLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred eEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 74432333478888899988875433
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.47 E-value=13 Score=38.53 Aligned_cols=117 Identities=15% Similarity=0.328 Sum_probs=71.4
Q ss_pred CEEEEEeCCCcEEEEEcCC--CeeeeeeccCCCeEEEEEecCCCEEEEEcCCC------cEEEE-Eeec--CCCceeecc
Q 001287 89 GFLISITNDNEIQVWSLES--RSLACCLKWESNITAFSVISGSHFMYIGDENG------LMSVI-KYDA--DEGKLFQLP 157 (1107)
Q Consensus 89 ~~L~S~s~d~~I~vWDl~s--~~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg------~V~vw-~~d~--~~~~l~~~~ 157 (1107)
..|+.+...+.|.+|++.. .++++.+.--+.|..+.++..|+|+++=-++. .+|++ +|.. +..... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v--~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV--R 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE--E
Confidence 4565557788899999983 35667777779999999999999999874432 34443 2322 122222 1
Q ss_pred eeeccccccc-----------ccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEE
Q 001287 158 YNISADALSE-----------KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1107)
Q Consensus 158 ~~i~~~~~~~-----------~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~ 212 (1107)
.++-+|.... .+.+| -..++.+++-.|. .|+ |++|+.+. +.+|.+.....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElP--l~~~p~ciaCC~~-tG~-LlVg~~~~-l~lf~l~~~~~ 167 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELP--LSEPPLCIACCPV-TGN-LLVGCGNK-LVLFTLKYQTI 167 (215)
T ss_pred EEEcccccccCCCCccccceEEEEec--CCCCCCEEEecCC-CCC-EEEEcCCE-EEEEEEEEEEE
Confidence 2344432111 11111 1346788888776 677 77777665 47888765543
No 417
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.42 E-value=10 Score=45.74 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=53.4
Q ss_pred CCccccccCCCCCCCCccccCCCCcEEEEEecC----------CcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEE
Q 001287 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD----------GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVST 541 (1107)
Q Consensus 472 ~~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~D----------gtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~ 541 (1107)
..+.||+..-. ....+..|.+.-||...++ -.|+|+++++..+. ..+..|. .+-.
T Consensus 24 y~~~W~l~dl~---~~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~-----------~~~w~~~-~lI~ 88 (829)
T KOG2280|consen 24 YFMKWPLTDLY---YVYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLG-----------RILWKHG-ELIG 88 (829)
T ss_pred cccCCcccccc---eeEEEecccCCceEEEecccccccccccceeEEEEeccccchH-----------HHHhcCC-Ceee
Confidence 46788884311 1222556666666666555 23778887776654 2233444 6778
Q ss_pred EEEEeCCCeEEEeccCceEEEEEecCCC
Q 001287 542 LSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1107)
Q Consensus 542 l~fspd~~~Lasg~~dg~V~vw~~~~~~ 569 (1107)
+.|+.+. .|++...+|+|+||++....
T Consensus 89 mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 89 MGWSDDE-ELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred ecccCCc-eEEEEeccceEEEeecchhh
Confidence 9998655 55567889999999998764
No 418
>PRK13684 Ycf48-like protein; Provisional
Probab=84.96 E-value=29 Score=39.37 Aligned_cols=117 Identities=11% Similarity=-0.028 Sum_probs=64.1
Q ss_pred CCCeEEEEEEeCCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEE-eecCcCEEEEEEcCC
Q 001287 536 RAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSS 614 (1107)
Q Consensus 536 ~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~h~~~Vt~la~sp~ 614 (1107)
...++++.+.++++.+++| ..|.+++=.-+.. ..+.....- ..-...++++++.++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G----------------------~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL----------------------ESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCC----------------------CccccccCCccccccceeeEEEcCC
Confidence 3478999999999887765 4576542111111 111110000 001235788999998
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceE
Q 001287 615 GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKI 694 (1107)
Q Consensus 615 ~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v 694 (1107)
+..+++|. +|.|. ....++..-.......+.+.....+.|.. ....+..+..|.|
T Consensus 271 ~~~~~~G~-~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~G~~G~i 325 (334)
T PRK13684 271 GEIWAGGG-NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-----------------------PEKGFVLGQRGVL 325 (334)
T ss_pred CCEEEEcC-CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-----------------------CCceEEECCCceE
Confidence 88776664 56444 34444332211111122334566666662 2346778889999
Q ss_pred EEEeCC
Q 001287 695 SIVGGS 700 (1107)
Q Consensus 695 ~v~d~~ 700 (1107)
..++..
T Consensus 326 l~~~~~ 331 (334)
T PRK13684 326 LRYVGS 331 (334)
T ss_pred EEecCC
Confidence 888864
No 419
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.95 E-value=44 Score=37.77 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=73.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCc------EEEEeCCC-----ccee-----eeC-CCCC-------CEEEEEEEeCCCE
Q 001287 35 PATASILAFDHIQRLLAIATLDGR------IKVIGGDG-----IEGL-----LIS-PSQL-------PYKNLEFLQNQGF 90 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~------I~iw~~~~-----~~~~-----~~~-~h~~-------~V~~l~fs~d~~~ 90 (1107)
-+..+.|+|+|++..+.+-+.+|. +..+.+.. ..+. .+. .... ....|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 457899999965555555566777 66555433 1111 111 1111 3458888888888
Q ss_pred EEEEeCC------CcEEEEEcCCCeeeeee----------------ccCCCeEEEEEecCCCEEEEEcCCC-------c-
Q 001287 91 LISITND------NEIQVWSLESRSLACCL----------------KWESNITAFSVISGSHFMYIGDENG-------L- 140 (1107)
Q Consensus 91 L~S~s~d------~~I~vWDl~s~~~~~~~----------------~~~~~Vt~l~~~~~~~~l~~g~~dg-------~- 140 (1107)
+++.-.+ ..|...|.. ++....+ .......+++++++++.|++..+.. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8888777 788888877 5443332 1224688999999999877776533 2
Q ss_pred ------EEEEEeecCC
Q 001287 141 ------MSVIKYDADE 150 (1107)
Q Consensus 141 ------V~vw~~d~~~ 150 (1107)
++++.++...
T Consensus 178 ~~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKT 193 (326)
T ss_pred cccCceEEEEEecCCC
Confidence 6788887654
No 420
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.80 E-value=45 Score=38.71 Aligned_cols=147 Identities=8% Similarity=-0.050 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCcc-eeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCe-----ee
Q 001287 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-----LA 111 (1107)
Q Consensus 38 i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~-----~~ 111 (1107)
...+..++++.++++|.....++-|+..... .....+-...++.+.|.+++..++.+ .+|.| +|....++ -.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccce
Confidence 3445678999999998765444445543321 22333445578999999887666544 55654 44444443 22
Q ss_pred eeeccC---CCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC
Q 001287 112 CCLKWE---SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1107)
Q Consensus 112 ~~~~~~---~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~ 188 (1107)
...... ..++.+.+.+++..+++| .+|.+.... + ...+.... +.-. .-....+.+.|.+
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D-~G~tW~~~----~~~~---------~~~~~ly~v~f~~-- 380 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D-GGKSWKRD----KGAD---------NIAANLYSVKFFD-- 380 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C-CCcceeEc----cccC---------CCCcceeEEEEcC--
Confidence 222222 358888888777765555 566553332 1 11121210 1000 0014578999844
Q ss_pred CCCEEEEEECCCeEEEE
Q 001287 189 SGNRVLIAYENALVILW 205 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vw 205 (1107)
+++ ..+.+.+|.|.-|
T Consensus 381 ~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CCc-eEEEeCCcEEEEe
Confidence 344 7888889987654
No 421
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=84.72 E-value=10 Score=34.40 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=46.4
Q ss_pred ceEEEEeCCCC---CCcceEEEEEcCccccccccceeeeeeecCCCccceEEEccCCCC-CCCCCcceEEEEccCCeEEE
Q 001287 327 GRLFVYGGDEI---GSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGA-TVGNHKADLFVLTSPGQLHF 402 (1107)
Q Consensus 327 ~~llv~gg~~~---~~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~-~~~~~~~~l~vl~~~G~l~~ 402 (1107)
.-++.+||-.. +..++++++. ..+ ...+....++.||..+..... ...+++.+++||++. ++++
T Consensus 29 ~~iiFsGGmp~~~ygdr~~vTV~~-g~~----------~~~ldf~s~VIDF~~i~~~~~~~e~~~P~alvVL~e~-eLVv 96 (105)
T PF08366_consen 29 PFIIFSGGMPRASYGDRHCVTVMQ-GKT----------HVVLDFTSRVIDFFTICESPWPNEFQDPYALVVLLEE-ELVV 96 (105)
T ss_pred cEEEEeCCccccccCCCceEEEEe-CCE----------EEEEEcCCceEEEEEEcCCCCccccCCCcEEEEEEcC-cEEE
Confidence 34455566533 3457888887 222 266778889999999988765 356788889998877 6666
Q ss_pred Eec
Q 001287 403 YDN 405 (1107)
Q Consensus 403 ~d~ 405 (1107)
+|.
T Consensus 97 IDL 99 (105)
T PF08366_consen 97 IDL 99 (105)
T ss_pred EEC
Confidence 774
No 422
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.58 E-value=2.5 Score=51.50 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=72.7
Q ss_pred CcEEEEeCC--CCceeEEEeeccceeeeeecCCCCCeEEEEEEe---CCCeEEEeccCceEEEEEecCCCCCccceeecc
Q 001287 505 GSVRIWDAT--YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF---INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 579 (1107)
Q Consensus 505 gtIriWd~~--~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fsp---d~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~ 579 (1107)
|...+||+. .+.+++-..++. ...-...+.-+.||| +.-++..+..+|.+++.+++.... ..|...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~------~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---~l~rsH 223 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTP------ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---SLFRSH 223 (1283)
T ss_pred hhhheeehHhhccccccceEEee------cCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---HHHHhc
Confidence 567889865 344332222221 111223456666765 667888899999999999987632 122221
Q ss_pred CcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcC--CCeEEEEeecCCCCC-CceEEEEE
Q 001287 580 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN--LLSVLFFTDDISGSS-SPIISMTW 656 (1107)
Q Consensus 580 ~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~--~~~~~~~~~~~~~h~-~~V~~l~f 656 (1107)
+.+.+..-....|+..+. ..||||+.+|....||.|++|.+. +.......+.+..|. .+-.|..|
T Consensus 224 s~~~~d~a~~~~g~~~l~------------~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc 291 (1283)
T KOG1916|consen 224 SQRVTDMAFFAEGVLKLA------------SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLC 291 (1283)
T ss_pred CCCcccHHHHhhchhhhe------------eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeee
Confidence 111111111222222222 179999999999999999999863 222222224555566 34444333
Q ss_pred e
Q 001287 657 T 657 (1107)
Q Consensus 657 s 657 (1107)
.
T Consensus 292 ~ 292 (1283)
T KOG1916|consen 292 H 292 (1283)
T ss_pred c
Confidence 3
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.08 E-value=26 Score=40.34 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-cEEEEeC---CCc--ceeeeCCCCCCEEEEEEEeCCCEEEEEeCCC
Q 001287 36 ATASILAFDHIQRLLAIAT-----------LDG-RIKVIGG---DGI--EGLLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs-----------~dg-~I~iw~~---~~~--~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~ 98 (1107)
..+..|+|+++|+++++-. ..+ +|.++.- ++. +.......-.....|+|.+++ |+.++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 5677899999999886642 223 7888754 222 222333333356889999987 44444443
Q ss_pred cEEEEEcCC-------Ce-eeeeecc-----CCCeEEEEEecCCCEE
Q 001287 99 EIQVWSLES-------RS-LACCLKW-----ESNITAFSVISGSHFM 132 (1107)
Q Consensus 99 ~I~vWDl~s-------~~-~~~~~~~-----~~~Vt~l~~~~~~~~l 132 (1107)
..++.|... .+ ++..+.. ......+.+.|++.+.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LY 138 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLY 138 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEE
Confidence 333445432 12 2222322 2346788999988643
No 424
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=83.91 E-value=67 Score=34.63 Aligned_cols=153 Identities=13% Similarity=0.132 Sum_probs=87.6
Q ss_pred cCCCCcEEEEEecCC--cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecCC
Q 001287 491 CHSVDRVYLAGYHDG--SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1107)
Q Consensus 491 ~s~~~~~laTgs~Dg--tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~~ 568 (1107)
+..++.++-+.+.-| .|+.+|..++.......++...+.- .|+ .. +++...-.=.++...+|+..+-
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-------Git---~~-~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-------GIT---IL-GDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-------EEE---EE-TTEEEEEESSSSEEEEEETTTT
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-------eEE---EE-CCEEEEEEecCCeEEEEccccc
Confidence 345666888877766 5999999999876555555444332 122 22 2233333335677778877653
Q ss_pred CCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCC
Q 001287 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 648 (1107)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~ 648 (1107)
+.+..+.. .+.=+.|+ .|++.|...+....++++|..+-+..-..... ...
T Consensus 121 -------------------------~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g 171 (264)
T PF05096_consen 121 -------------------------KKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNG 171 (264)
T ss_dssp -------------------------EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETT
T ss_pred -------------------------eEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECC
Confidence 33444433 35666777 56777888888888999999877665444331 223
Q ss_pred Cc---eEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCCCcceec
Q 001287 649 SP---IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1107)
Q Consensus 649 ~~---V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~ 706 (1107)
.+ +..|.|- ++.+.+-.=..-.|.++|.+||.++.
T Consensus 172 ~pv~~LNELE~i-----------------------~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 172 RPVSNLNELEYI-----------------------NGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EE---EEEEEEE-----------------------TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred EECCCcEeEEEE-----------------------cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 33 4456665 14444444455688899999999864
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=83.45 E-value=40 Score=38.25 Aligned_cols=154 Identities=6% Similarity=-0.009 Sum_probs=84.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEE-EEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCee
Q 001287 33 GIPATASILAFDHIQRLLAIATLDGRIK-VIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~dg~I~-iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~ 110 (1107)
+....+..++++|++.++++|.. |.+. .++-.+.... ....-...+..+.+.+++..++ ++..|.+.+=.-+.+.-
T Consensus 170 ~~~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~-vg~~G~~~~~s~d~G~s 247 (334)
T PRK13684 170 DAAGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWM-LARGGQIRFNDPDDLES 247 (334)
T ss_pred CCcceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEE-EecCCEEEEccCCCCCc
Confidence 33556788999999988888765 5443 3332222222 2233345789999999866544 45567665323344432
Q ss_pred eeeecc-----CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcc
Q 001287 111 ACCLKW-----ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1107)
Q Consensus 111 ~~~~~~-----~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~ 185 (1107)
-+.... ...++++.+.+++..+++| .+|.+. ...|. ..+... ++... .-....+.+.|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~-G~tW~~----~~~~~---------~~~~~~~~~~~~ 311 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG-GKTWEK----DPVGE---------EVPSNFYKIVFL 311 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC-CCCCeE----CCcCC---------CCCcceEEEEEe
Confidence 222211 1347788888877655544 566542 22221 112221 11000 001347777774
Q ss_pred cCCCCCEEEEEECCCeEEEEEc
Q 001287 186 PNSSGNRVLIAYENALVILWDV 207 (1107)
Q Consensus 186 P~~~~~~ll~~~~dg~V~vwdl 207 (1107)
. +++ .++++..|.|..|+-
T Consensus 312 ~--~~~-~~~~G~~G~il~~~~ 330 (334)
T PRK13684 312 D--PEK-GFVLGQRGVLLRYVG 330 (334)
T ss_pred C--CCc-eEEECCCceEEEecC
Confidence 3 344 778888898877753
No 426
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.36 E-value=90 Score=35.65 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=49.4
Q ss_pred CcceeeeCCCCCCEEE-----EEEEeCCCEEEEEeC-C--CcEEEEEcCCCeeeeeeccCC-CeEEEEEecCCCEEEEEc
Q 001287 66 GIEGLLISPSQLPYKN-----LEFLQNQGFLISITN-D--NEIQVWSLESRSLACCLKWES-NITAFSVISGSHFMYIGD 136 (1107)
Q Consensus 66 ~~~~~~~~~h~~~V~~-----l~fs~d~~~L~S~s~-d--~~I~vWDl~s~~~~~~~~~~~-~Vt~l~~~~~~~~l~~g~ 136 (1107)
+.+++.+..+.+.-.. =+|.+||.+|+-++. | ..+.+-|+.+++..+....++ ......++++++.++-..
T Consensus 20 G~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 20 GHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE
T ss_pred CceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE
Confidence 3444444444333332 346778877766665 4 458888999998877765432 122345667777765433
Q ss_pred CCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCE
Q 001287 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1107)
Q Consensus 137 ~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ 192 (1107)
.+..| +.++..+.+... .|.++... +-...|...+++.+
T Consensus 100 ~~~~l--~~vdL~T~e~~~-vy~~p~~~--------------~g~gt~v~n~d~t~ 138 (386)
T PF14583_consen 100 NGRSL--RRVDLDTLEERV-VYEVPDDW--------------KGYGTWVANSDCTK 138 (386)
T ss_dssp TTTEE--EEEETTT--EEE-EEE--TTE--------------EEEEEEEE-TTSSE
T ss_pred CCCeE--EEEECCcCcEEE-EEECCccc--------------ccccceeeCCCccE
Confidence 33444 555554444433 37787543 44566655556663
No 427
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.83 E-value=63 Score=33.78 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=63.4
Q ss_pred EEEEEEeCCCeE-EEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEE
Q 001287 540 STLSFCFINSSL-AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL 618 (1107)
Q Consensus 540 t~l~fspd~~~L-asg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~l 618 (1107)
..|+|+.|.+.+ .+-+.+-.|.-|+.+-...... .++++.++.... + + ....--.+++..+|.+.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s------nr~~i~dlrk~~---~---~--e~~~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS------NRKVIFDLRKSQ---P---F--ESLEPDGMTIDTEGNLY 226 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCccccc------CcceeEEeccCC---C---c--CCCCCCcceEccCCcEE
Confidence 568898877654 4455677887788654322111 011111111100 0 0 01111235567789998
Q ss_pred EEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEe
Q 001287 619 AVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1107)
Q Consensus 619 a~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs 657 (1107)
++....|+|..+|..+++++..... ....|++++|.
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFg 262 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFG 262 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEec
Confidence 8999999999999999999976665 57889999998
No 428
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.64 E-value=23 Score=41.01 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=56.4
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEeec--------CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCC--
Q 001287 119 NITAFSVISGSHFMYIGDENGLMSVIKYDA--------DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-- 188 (1107)
Q Consensus 119 ~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~--------~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~-- 188 (1107)
.|..+..++.|..++..+.+|.+ |..+.. ++|+....-.+++ +...++... ..-.+..++|||..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~-vMeLp~rwG~~s~~eDgk~~v~CRt~~---i~~~~ftss-~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLM-VMELPKRWGKNSEFEDGKSTVNCRTTP---VAERFFTSS-TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeE-EEEchhhcCccceecCCCceEEEEeec---ccceeeccC-CceeeeeccccCCccC
Confidence 46777888999999999999954 444421 2232221101111 112222222 23457888999975
Q ss_pred CCCEEEEEECCCeEEEEEccCCEEEEE
Q 001287 189 SGNRVLIAYENALVILWDVSEAQIIFV 215 (1107)
Q Consensus 189 ~~~~ll~~~~dg~V~vwdl~~~~~~~~ 215 (1107)
|. .|++-.+|.+||+||+++.+-++.
T Consensus 180 D~-hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 180 DP-HLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred Cc-eEEEEecCcEEEEEecCCcchhhc
Confidence 44 489999999999999998765543
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.60 E-value=6.9 Score=41.29 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=47.8
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCcceeeeC---------------CCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC
Q 001287 42 AFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS---------------PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1107)
Q Consensus 42 afsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~---------------~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~ 106 (1107)
.+...+.+|.+-+.+|.+++||+.....++.. .....|+.+.++.+|.-|++.+ +|....||..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 35567899999999999999999776554322 2445788888887776666665 4677777765
Q ss_pred CC
Q 001287 107 SR 108 (1107)
Q Consensus 107 s~ 108 (1107)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 44
No 430
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.51 E-value=5.5 Score=48.74 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=46.6
Q ss_pred CCCCEEEEEECCCcEEEEeCCC----ccee---eeCC--------------------CCCCEEEEEEEe----CCCEEEE
Q 001287 45 HIQRLLAIATLDGRIKVIGGDG----IEGL---LISP--------------------SQLPYKNLEFLQ----NQGFLIS 93 (1107)
Q Consensus 45 p~~~~LA~Gs~dg~I~iw~~~~----~~~~---~~~~--------------------h~~~V~~l~fs~----d~~~L~S 93 (1107)
++...++++..||.+....... .... .... ....+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4778899999999998877643 1111 1111 123456666665 7789999
Q ss_pred EeCCCcEEEEEcCCCeeeeeec
Q 001287 94 ITNDNEIQVWSLESRSLACCLK 115 (1107)
Q Consensus 94 ~s~d~~I~vWDl~s~~~~~~~~ 115 (1107)
.+.|++|++||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999876653
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=81.88 E-value=19 Score=43.82 Aligned_cols=74 Identities=8% Similarity=0.205 Sum_probs=55.2
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeC--CCCCCEEEEEEE--eCCCEEEEEeCCCcEEEEE
Q 001287 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS--PSQLPYKNLEFL--QNQGFLISITNDNEIQVWS 104 (1107)
Q Consensus 30 ~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~--~h~~~V~~l~fs--~d~~~L~S~s~d~~I~vWD 104 (1107)
++.|+. .++.+.-+..++...+-+....+.|||......-... ...++|..|.|. |++..+++++..+.|.++-
T Consensus 25 ~~T~i~-~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 25 FETGIS-NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EecCCC-CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 444555 4566667777787777666788999999766533222 457899999995 6889999999999988875
No 432
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.32 E-value=51 Score=36.19 Aligned_cols=120 Identities=20% Similarity=0.223 Sum_probs=69.2
Q ss_pred cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEec------cCceEEEEEecCCCCCccceeecc
Q 001287 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN------EFGLVYIYNLNGSLDAKNFLFVLE 579 (1107)
Q Consensus 506 tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~------~dg~V~vw~~~~~~~~~~~~~~~~ 579 (1107)
.|++||....... .--.+-.+.|++|.|..++++++.|. ....+..|++....-.
T Consensus 17 ~lC~yd~~~~qW~-----------~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-------- 77 (281)
T PF12768_consen 17 GLCLYDTDNSQWS-----------SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-------- 77 (281)
T ss_pred EEEEEECCCCEee-----------cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee--------
Confidence 4899998877755 11122345799999997777777765 3456777777765210
Q ss_pred CcCcceecccCCcceeEEE-E-eecCcCEEEEEEcC-CC-CEEEEEe-CCCeEEEEEcCCCeEEEEeecCCCCCCceEEE
Q 001287 580 TKSEVHALPEGKISLCRAV-F-SLVNSPVRALQFTS-SG-AKLAVGF-ECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1107)
Q Consensus 580 ~~~~~~~~~~~~g~~~~~~-~-~~h~~~Vt~la~sp-~~-~~la~Gs-~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l 654 (1107)
.+.. . ...+++|+++.+.. |+ ++.+.|. .+|...|.-..+.....-.....+....|..+
T Consensus 78 ---------------~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l 142 (281)
T PF12768_consen 78 ---------------SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGL 142 (281)
T ss_pred ---------------ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEE
Confidence 0000 0 12458899998854 32 4555554 55554454444433321111123346788889
Q ss_pred EEeec
Q 001287 655 TWTEF 659 (1107)
Q Consensus 655 ~fs~~ 659 (1107)
.+-+.
T Consensus 143 ~~~~l 147 (281)
T PF12768_consen 143 QVLPL 147 (281)
T ss_pred EEEec
Confidence 88755
No 433
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=81.25 E-value=1.1e+02 Score=35.06 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=46.2
Q ss_pred CEEEEEEEeCCCEEEEEeCCC-----cEEEEEcCCCeeeeee--c---cCCCeEEEEEe-cCC-CEEEEEcCCCcEEEEE
Q 001287 78 PYKNLEFLQNQGFLISITNDN-----EIQVWSLESRSLACCL--K---WESNITAFSVI-SGS-HFMYIGDENGLMSVIK 145 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s~d~-----~I~vWDl~s~~~~~~~--~---~~~~Vt~l~~~-~~~-~~l~~g~~dg~V~vw~ 145 (1107)
-+..+.|++++..|+..-.++ .+.+.|..+++..... . +-..-..+.+. +++ .++.+...+|--.|+.
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 477888999887444433222 3777788776443222 1 22233355554 444 5666667888888888
Q ss_pred eecCCCceee
Q 001287 146 YDADEGKLFQ 155 (1107)
Q Consensus 146 ~d~~~~~l~~ 155 (1107)
++...+...+
T Consensus 265 ~~~~~~~~~~ 274 (353)
T PF00930_consen 265 YDLDGGKPRQ 274 (353)
T ss_dssp EETTSSEEEE
T ss_pred Ecccccceec
Confidence 8877666443
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.22 E-value=1.2e+02 Score=37.26 Aligned_cols=75 Identities=11% Similarity=0.101 Sum_probs=48.4
Q ss_pred cCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCC
Q 001287 602 VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPA 681 (1107)
Q Consensus 602 h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~ 681 (1107)
..+.+-.+-|+.+..+| +-..||+|.||++.+...-...--.....+.|..+.|...
T Consensus 82 ~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~---------------------- 138 (829)
T KOG2280|consen 82 KHGELIGMGWSDDEELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN---------------------- 138 (829)
T ss_pred cCCCeeeecccCCceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEecC----------------------
Confidence 34488899999887655 5568999999999876554210011123344555555521
Q ss_pred ccEEEEEcCCceEEEEeCCC
Q 001287 682 EEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 682 ~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
| +++.+.+|+|.+.....
T Consensus 139 G--Vavlt~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 139 G--VAVLTVSGQVILINGVE 156 (829)
T ss_pred c--eEEEecCCcEEEEcCCC
Confidence 2 78888888888887654
No 435
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=81.07 E-value=25 Score=43.06 Aligned_cols=110 Identities=17% Similarity=0.078 Sum_probs=60.7
Q ss_pred CCCCcEEEEEecCCc-----EEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEE-EeCCCeEEEeccCce------
Q 001287 492 HSVDRVYLAGYHDGS-----VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSF-CFINSSLAVGNEFGL------ 559 (1107)
Q Consensus 492 s~~~~~laTgs~Dgt-----IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~f-spd~~~Lasg~~dg~------ 559 (1107)
.-++.++|.|+.||. |..||..+........ ........+. .-++...++||.++.
T Consensus 378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~------------m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s 445 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP------------MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS 445 (571)
T ss_pred EECCEEEEEeccccccccccEEEecCCCCcccccCC------------CCcceeeeEEEEECCEEEEEcCcCCCccccce
Confidence 346779999999975 7778877766552211 1112222222 237788888886654
Q ss_pred EEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCe-----EEEEEcCC
Q 001287 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR-----VAVLDMNL 634 (1107)
Q Consensus 560 V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~-----V~iwd~~~ 634 (1107)
|..||..++.= ..+........... ...-++.+.|+|+.||. |..||.++
T Consensus 446 ve~YDP~t~~W-----------------------~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 446 VECYDPETNTW-----------------------TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEEcCCCCce-----------------------eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 45555544310 00000000000111 22236778899998873 77788887
Q ss_pred CeEE
Q 001287 635 LSVL 638 (1107)
Q Consensus 635 ~~~~ 638 (1107)
....
T Consensus 501 ~~W~ 504 (571)
T KOG4441|consen 501 NQWT 504 (571)
T ss_pred Ccee
Confidence 7665
No 436
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=80.53 E-value=23 Score=42.93 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=75.6
Q ss_pred eeecCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEeCCCcceeeeC---C----------CC-CCE------------
Q 001287 29 AVHYGIPATASILAFDHIQR---LLAIATLDGRIKVIGGDGIEGLLIS---P----------SQ-LPY------------ 79 (1107)
Q Consensus 29 ~~~~G~~~~i~~lafsp~~~---~LA~Gs~dg~I~iw~~~~~~~~~~~---~----------h~-~~V------------ 79 (1107)
...|..+.....+.+..+|+ +|+.++.+|.+++.|..+.+.+... + .. .++
T Consensus 294 ~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~ 373 (527)
T TIGR03075 294 EWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKK 373 (527)
T ss_pred CccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCC
Confidence 34466667777777767787 9999999999999999665543110 0 00 001
Q ss_pred ----------------EEEEEEeCCCEEEEEeC---------------------------------CCcEEEEEcCCCee
Q 001287 80 ----------------KNLEFLQNQGFLISITN---------------------------------DNEIQVWSLESRSL 110 (1107)
Q Consensus 80 ----------------~~l~fs~d~~~L~S~s~---------------------------------d~~I~vWDl~s~~~ 110 (1107)
...+|.|+.++++.-.. -+.|.-||+.++++
T Consensus 374 ~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~ 453 (527)
T TIGR03075 374 GKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKI 453 (527)
T ss_pred CCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCce
Confidence 11445554444433222 24588899999988
Q ss_pred eeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceee
Q 001287 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1107)
Q Consensus 111 ~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~ 155 (1107)
+-......+...-.+.-.+..+++++.+|.++++ |..+|+.+-
T Consensus 454 ~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~--D~~TGe~lw 496 (527)
T TIGR03075 454 VWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAF--DAKTGEELW 496 (527)
T ss_pred eeEecCCCCCCCcceEECCcEEEEECCCCeEEEE--ECCCCCEeE
Confidence 8776544322111122355678889889976554 455677763
No 437
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=80.43 E-value=1e+02 Score=34.28 Aligned_cols=159 Identities=9% Similarity=0.060 Sum_probs=75.1
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCC
Q 001287 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1107)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~-~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~ 151 (1107)
.+-.+.+..+..++||.+++.++..+...-||--.. =..+...-..+|.++.|.+++...+++ ..|.|+.=+......
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 344578999999999887777766666778885432 122333345789999999997765555 777665544111111
Q ss_pred ceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEE-EeCCccccccccccCC
Q 001287 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDS 230 (1107)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~-~~g~~~~~~~~~~~~~ 230 (1107)
...+.. ++ .....-.+..++|.| +.. +.++..+|.+ +...+.++.=. ....
T Consensus 220 ~w~~~~--~~----------~~~~~~~~ld~a~~~--~~~-~wa~gg~G~l-~~S~DgGktW~~~~~~------------ 271 (302)
T PF14870_consen 220 TWSEPI--IP----------IKTNGYGILDLAYRP--PNE-IWAVGGSGTL-LVSTDGGKTWQKDRVG------------ 271 (302)
T ss_dssp EE---B---T----------TSS--S-EEEEEESS--SS--EEEEESTT-E-EEESSTTSS-EE-GGG------------
T ss_pred cccccc--CC----------cccCceeeEEEEecC--CCC-EEEEeCCccE-EEeCCCCccceECccc------------
Confidence 111100 00 001113488999976 455 6667777764 34444443211 1100
Q ss_pred CCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEE
Q 001287 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1107)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lW 277 (1107)
..-...+..+.|..+ ..-.+-+.+|.|.-|
T Consensus 272 ---------------~~~~~n~~~i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 272 ---------------ENVPSNLYRIVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp ---------------TTSSS---EEEEEET--TEEEEE-STTEEEEE
T ss_pred ---------------cCCCCceEEEEEcCC--CceEEECCCcEEEEe
Confidence 000445777887633 344556678888766
No 438
>PHA02713 hypothetical protein; Provisional
Probab=79.98 E-value=55 Score=40.05 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=17.8
Q ss_pred CCCCEEEEEEcCC--cEEEEeCCCCC
Q 001287 260 SSGSILAVGYIDG--DILLWNTSTTA 283 (1107)
Q Consensus 260 pdg~~l~sg~~dG--~I~lWd~~~~~ 283 (1107)
-+|...++|+.+| ++..||..+.+
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ECCEEEEEeeecceeehhhcCccccc
Confidence 4688889999888 66677766553
No 439
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=79.95 E-value=15 Score=42.53 Aligned_cols=108 Identities=14% Similarity=0.104 Sum_probs=69.1
Q ss_pred eEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCC
Q 001287 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1107)
Q Consensus 595 ~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~ 674 (1107)
+...+......+.+|+.+|++++.|+.+.-|.|.++|+..+.++ +.+.|..+. .+.|-...........+ +...
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv---rmWKGYRdA--qc~wi~~~~~~~~~~~~-~~~~ 372 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV---RMWKGYRDA--QCGWIEVPEEGDRDRSN-SNSP 372 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh---hhhccCccc--eEEEEEeeccccccccc-cccc
Confidence 44555566778999999999999999988999999999999988 566776653 23333221111000000 0011
Q ss_pred CCCCCCCccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 675 EVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 675 ~~~~~~~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
........-+++=+-.-|.|-||+..+|.-+.+.
T Consensus 373 ~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 373 KSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred CCCCcceEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 1111122334556777899999999998877655
No 440
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.79 E-value=1e+02 Score=33.87 Aligned_cols=120 Identities=16% Similarity=0.279 Sum_probs=75.6
Q ss_pred cccccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-----Ccc---eeeeCC-----CCCCEEEEEEE
Q 001287 19 LTAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-----GIE---GLLISP-----SQLPYKNLEFL 85 (1107)
Q Consensus 19 l~~~~~~~~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~-----~~~---~~~~~~-----h~~~V~~l~fs 85 (1107)
..+...|+.+.+--| |+|+|.+.+-+.....+...+|+.. +.. ++.+.. ..+..+.+.|.
T Consensus 13 ~~A~~tDp~L~N~WG-------ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN 85 (336)
T TIGR03118 13 HAAQIVDPGLRNAWG-------LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFN 85 (336)
T ss_pred ccccccCccccccce-------eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEe
Confidence 346777888888777 8999999998888888999999986 221 222221 23467788887
Q ss_pred eCCCE------------EEEEeCCCcEEEEEcCCCee---e--eee--ccCCCe---EEEEEecCCCEEEEEc-CCCcEE
Q 001287 86 QNQGF------------LISITNDNEIQVWSLESRSL---A--CCL--KWESNI---TAFSVISGSHFMYIGD-ENGLMS 142 (1107)
Q Consensus 86 ~d~~~------------L~S~s~d~~I~vWDl~s~~~---~--~~~--~~~~~V---t~l~~~~~~~~l~~g~-~dg~V~ 142 (1107)
....+ .+-++.||+|.-|.-.-... . ..+ +..+.| .+++-...+++|+... .++.|.
T Consensus 86 ~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~ID 165 (336)
T TIGR03118 86 GSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRID 165 (336)
T ss_pred CCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceE
Confidence 54333 57778899999998432211 0 111 112222 2333334467777665 567777
Q ss_pred EEE
Q 001287 143 VIK 145 (1107)
Q Consensus 143 vw~ 145 (1107)
|+|
T Consensus 166 VFd 168 (336)
T TIGR03118 166 VFK 168 (336)
T ss_pred Eec
Confidence 765
No 441
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.53 E-value=6 Score=40.06 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE----------------------EEeecC----------------CCC
Q 001287 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL----------------------FFTDDI----------------SGS 647 (1107)
Q Consensus 606 Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~----------------------~~~~~~----------------~~h 647 (1107)
..+|+||.||+ ||+.+.+. |.|++...+..+ +....+ ...
T Consensus 7 ~~~l~WS~Dg~-laV~t~~~-v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s 84 (173)
T PF12657_consen 7 PNALAWSEDGQ-LAVATGES-VHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEIS 84 (173)
T ss_pred CcCeeECCCCC-EEEEcCCe-EEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccc
Confidence 46799999995 66666655 888865544400 000000 001
Q ss_pred CCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEcCCceEEEEeCC
Q 001287 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 648 ~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~ 700 (1107)
...|.+++|++.+.. ...+.+|++.+.++.|.+|...
T Consensus 85 ~~~vv~~aWSP~Gl~----------------~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLG----------------PNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cccEEEEEECCCCCC----------------CCCceEEEEEcCCCeEEEEecC
Confidence 125667777764433 1347789999999999999975
No 442
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=79.24 E-value=1.1e+02 Score=37.65 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=55.2
Q ss_pred CcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCc
Q 001287 603 NSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE 682 (1107)
Q Consensus 603 ~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~ 682 (1107)
-...+-+.-|.-++..++-+....+.|||..++...+... + .....|..+.|++. |++
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~-f-~~~~~I~dLDWtst--------------------~d~ 86 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES-F-SEDDPIRDLDWTST--------------------PDG 86 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee-e-cCCCceeeceeeec--------------------CCC
Confidence 3456666677767666666666689999999998665433 2 46789999999965 556
Q ss_pred cEEEEEcCCceEEEEeCC
Q 001287 683 EVIIVLFKDAKISIVGGS 700 (1107)
Q Consensus 683 ~~L~s~s~Dg~v~v~d~~ 700 (1107)
..+++.+-...|.++---
T Consensus 87 qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 87 QSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CEEEEEEcCcEEEEEEcc
Confidence 677777777788888653
No 443
>PRK10115 protease 2; Provisional
Probab=78.42 E-value=1.9e+02 Score=36.37 Aligned_cols=110 Identities=6% Similarity=-0.030 Sum_probs=63.0
Q ss_pred CCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCC------CcEEEEE
Q 001287 36 ATASILAFDHIQRLLAIATLD-----GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND------NEIQVWS 104 (1107)
Q Consensus 36 ~~i~~lafsp~~~~LA~Gs~d-----g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d------~~I~vWD 104 (1107)
-.+..+.++|++++||.+... -.|++.++.+...+... ....-..++|++|+..|+-...+ ..|..|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 446678899999999997544 45778887654422111 11111459999988766555432 3588888
Q ss_pred cCCC--eeeeeec-cCCCeE-EEEEecCCCEEEEEcCC---CcEEEEEe
Q 001287 105 LESR--SLACCLK-WESNIT-AFSVISGSHFMYIGDEN---GLMSVIKY 146 (1107)
Q Consensus 105 l~s~--~~~~~~~-~~~~Vt-~l~~~~~~~~l~~g~~d---g~V~vw~~ 146 (1107)
+.++ +-...+. ...... ....+.+++++++.+.+ +.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8887 2222222 122222 23334477776655443 34555553
No 444
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.27 E-value=35 Score=37.38 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=76.1
Q ss_pred cCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEe------CCCeEEE
Q 001287 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF------ECGRVAV 629 (1107)
Q Consensus 556 ~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs------~dg~V~i 629 (1107)
.+..|++|+.... ++...-....+.|++|.|..+.++++.|. ....+..
T Consensus 14 ~C~~lC~yd~~~~-------------------------qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~ 68 (281)
T PF12768_consen 14 PCPGLCLYDTDNS-------------------------QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLAT 68 (281)
T ss_pred CCCEEEEEECCCC-------------------------EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEE
Confidence 4677999998775 22233334678999999998888888886 4667899
Q ss_pred EEcCCCeEEEEeecC-CCCCCceEEEEEeecccCccccCCCCCCCCCCCCCCCccEEEEEc-C--CceEEEEeCCCccee
Q 001287 630 LDMNLLSVLFFTDDI-SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-K--DAKISIVGGSSENMI 705 (1107)
Q Consensus 630 wd~~~~~~~~~~~~~-~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~L~s~s-~--Dg~v~v~d~~~g~~i 705 (1107)
||..+....-..... ...+++|..+.+..... ..+.++|. . +..|..||+..-.-+
T Consensus 69 yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~--------------------~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 69 YDFKNQTWSSLGGGSSNSIPGPVTALTFISNDG--------------------SNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EecCCCeeeecCCcccccCCCcEEEEEeeccCC--------------------ceEEEeceecCCCceEEEEcCCceEec
Confidence 999988764111111 12468899998864321 22333333 2 345788888765555
Q ss_pred cCCCCcccccceeeEEEEec
Q 001287 706 SSSPWHLKKKVIAISMEVIE 725 (1107)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~d 725 (1107)
..... ...+.+-.+.++.
T Consensus 129 ~~~~~--~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 129 GSDIL--GSGTTIRGLQVLP 146 (281)
T ss_pred ccccc--CCCCEEEEEEEEe
Confidence 44211 2245566666653
No 445
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=77.48 E-value=46 Score=38.31 Aligned_cols=172 Identities=16% Similarity=0.181 Sum_probs=77.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC------CcEEEEeCCCcceeeeCCCCC--C--EEEEEEEeCCCEEEEEeC------
Q 001287 33 GIPATASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISPSQL--P--YKNLEFLQNQGFLISITN------ 96 (1107)
Q Consensus 33 G~~~~i~~lafsp~~~~LA~Gs~d------g~I~iw~~~~~~~~~~~~h~~--~--V~~l~fs~d~~~L~S~s~------ 96 (1107)
..|+++.|+ |+|++++++-.| |.+-++|.++.++...-+... . -..+-+.|....++|..-
T Consensus 130 s~PHT~Hcl---p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~ 206 (461)
T PF05694_consen 130 SRPHTVHCL---PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMF 206 (461)
T ss_dssp EEEEEEEE----SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHH
T ss_pred CCCceeeec---CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhc
Confidence 345555555 478777775333 667788877666654333221 1 233444565566666542
Q ss_pred --------------CCcEEEEEcCCCeeeeeeccC---CCeEEEEEe--cCCCEEEEEcC-CCcEEEEEeecCCCceee-
Q 001287 97 --------------DNEIQVWSLESRSLACCLKWE---SNITAFSVI--SGSHFMYIGDE-NGLMSVIKYDADEGKLFQ- 155 (1107)
Q Consensus 97 --------------d~~I~vWDl~s~~~~~~~~~~---~~Vt~l~~~--~~~~~l~~g~~-dg~V~vw~~d~~~~~l~~- 155 (1107)
.++|.|||+.++++++++... ..+.-+.|. |...+-++|+. ..+|..|--+ ++++...
T Consensus 207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~ 285 (461)
T PF05694_consen 207 EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAE 285 (461)
T ss_dssp TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEE
T ss_pred ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeee
Confidence 357999999999999998654 234455554 55667666664 3444333332 2233221
Q ss_pred cceeecccccccccCCCC------CCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 156 LPYNISADALSEKAGFPL------LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~------~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
....++.... +...++. .-+.-|+.|..+.. +.-+.++...+|.|+.||++..
T Consensus 286 kVi~ip~~~v-~~~~lp~ml~~~~~~P~LitDI~iSlD-DrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 286 KVIDIPAKKV-EGWILPEMLKPFGAVPPLITDILISLD-DRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEE--EE---SS---GGGGGG-EE------EEE-TT-S-EEEEEETTTTEEEEEE-SST
T ss_pred EEEECCCccc-CcccccccccccccCCCceEeEEEccC-CCEEEEEcccCCcEEEEecCCC
Confidence 1122332211 0000000 00144788888663 3334556778999999999874
No 446
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=77.30 E-value=57 Score=41.28 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=89.8
Q ss_pred eEEEEEcCC--CCEEEEEEC-----------CCcEEEEeC-CCcce---eeeCCCCCCEEEEEEEeCCCEEEEEeCCCcE
Q 001287 38 ASILAFDHI--QRLLAIATL-----------DGRIKVIGG-DGIEG---LLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1107)
Q Consensus 38 i~~lafsp~--~~~LA~Gs~-----------dg~I~iw~~-~~~~~---~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I 100 (1107)
+++++|+.. +.++++|.. +|.++.|++ ...+. +-..+-.++|- +..|.+++++++ ..+.+
T Consensus 880 v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~Lag-vG~~l 956 (1205)
T KOG1898|consen 880 VCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAG-VGRFL 956 (1205)
T ss_pred eeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEe-cccEE
Confidence 455566543 336666652 366888876 22222 22222233444 446666655544 57889
Q ss_pred EEEEcCCCeeeeee--cc-CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCC
Q 001287 101 QVWSLESRSLACCL--KW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1107)
Q Consensus 101 ~vWDl~s~~~~~~~--~~-~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1107)
+++|+-..+++..- ++ +..|+.+.+ ...++++|+..-+|..+.|..++.++.. +-.+.. +.
T Consensus 957 ~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~----fadD~~----------pR 1020 (1205)
T KOG1898|consen 957 RLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV----FADDPV----------PR 1020 (1205)
T ss_pred EEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE----EeCCCc----------cc
Confidence 99999988776443 33 456666665 4678999999888999999887777764 222221 14
Q ss_pred CeEEEEcccCCCCCEEEEEECCCeEEE
Q 001287 178 PVVGVLPHPNSSGNRVLIAYENALVIL 204 (1107)
Q Consensus 178 ~V~~v~f~P~~~~~~ll~~~~dg~V~v 204 (1107)
+|+++.+ .+.++ ++.|..-|.+.+
T Consensus 1021 ~Vt~~~~--lD~~t-vagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1021 HVTALEL--LDYDT-VAGADRFGNIAV 1044 (1205)
T ss_pred eeeEEEE--ecCCc-eeeccccCcEEE
Confidence 5777766 43454 888887776544
No 447
>PHA02790 Kelch-like protein; Provisional
Probab=77.22 E-value=49 Score=39.69 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=35.6
Q ss_pred CCCCcEEEEEecCC--cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCc---eEEEEEec
Q 001287 492 HSVDRVYLAGYHDG--SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG---LVYIYNLN 566 (1107)
Q Consensus 492 s~~~~~laTgs~Dg--tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg---~V~vw~~~ 566 (1107)
.-++.+++.|+.++ ++..||........+..+. ...... ....-+|+..++||.++ .+..|+..
T Consensus 316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~---------~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL---------KPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred EECCEEEEECCcCCCCceEEEECCCCeEEECCCCC---------CCCccc--EEEEECCEEEEecCcCCCCccEEEEeCC
Confidence 35677999998654 5788887665544221111 111111 12234788888888654 35566554
Q ss_pred C
Q 001287 567 G 567 (1107)
Q Consensus 567 ~ 567 (1107)
+
T Consensus 385 ~ 385 (480)
T PHA02790 385 H 385 (480)
T ss_pred C
Confidence 4
No 448
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=76.79 E-value=2.2e+02 Score=36.24 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=59.7
Q ss_pred CCeEEEEEEe----CC---CeEEEecc----CceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEE-EeecCc
Q 001287 537 APVSTLSFCF----IN---SSLAVGNE----FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAV-FSLVNS 604 (1107)
Q Consensus 537 ~~Vt~l~fsp----d~---~~Lasg~~----dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~h~~ 604 (1107)
..++.|.|-+ .+ ..|++.+. ...|.-|.+..........|...+.+..........+.+... -.....
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~ 260 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK 260 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence 4788888876 21 23444433 347888998776533222222222111111111111111111 112467
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 001287 605 PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLF 639 (1107)
Q Consensus 605 ~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~ 639 (1107)
.|.+++....+.+++....||+|.++|..+-+.+.
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~ 295 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELN 295 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhc
Confidence 79999999888999999999999999998776653
No 449
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=75.80 E-value=92 Score=38.20 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=70.4
Q ss_pred CEEEEEECC------CcEEEEeCCCcceeeeCCCCCCEEEEEEEe-CCCEEEEEeCCC-----cEEEEEcCCCeeeeeec
Q 001287 48 RLLAIATLD------GRIKVIGGDGIEGLLISPSQLPYKNLEFLQ-NQGFLISITNDN-----EIQVWSLESRSLACCLK 115 (1107)
Q Consensus 48 ~~LA~Gs~d------g~I~iw~~~~~~~~~~~~h~~~V~~l~fs~-d~~~L~S~s~d~-----~I~vWDl~s~~~~~~~~ 115 (1107)
.+.++|+.| ..+..||....+.....+=..+=..+.... +|..-+.++.|| +|..||..+.+-.....
T Consensus 334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~ 413 (571)
T KOG4441|consen 334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP 413 (571)
T ss_pred EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC
Confidence 456666666 234455554444333222222222222222 444556666664 48899988875433333
Q ss_pred cCCCeEEEEEec-CCCEEEEEcCCCcE----EEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCC
Q 001287 116 WESNITAFSVIS-GSHFMYIGDENGLM----SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1107)
Q Consensus 116 ~~~~Vt~l~~~~-~~~~l~~g~~dg~V----~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~ 190 (1107)
.......+++.. ++...++|+.++.- .+-.||..+++.... +. +...+ ........ ++
T Consensus 414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~----~~------M~~~R---~~~g~a~~----~~ 476 (571)
T KOG4441|consen 414 MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI----AP------MNTRR---SGFGVAVL----NG 476 (571)
T ss_pred CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec----CC------ccccc---ccceEEEE----CC
Confidence 332333343333 45555566656543 233344444443321 10 00111 11112222 46
Q ss_pred CEEEEEECCC-----eEEEEEccCCEEEE
Q 001287 191 NRVLIAYENA-----LVILWDVSEAQIIF 214 (1107)
Q Consensus 191 ~~ll~~~~dg-----~V~vwdl~~~~~~~ 214 (1107)
.+.++|+.|+ .|-.||..+.+...
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeE
Confidence 6677777776 35667777766543
No 450
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=75.78 E-value=7 Score=29.10 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCC---EEEEEECCCcEEEEeCC
Q 001287 36 ATASILAFDHIQR---LLAIATLDGRIKVIGGD 65 (1107)
Q Consensus 36 ~~i~~lafsp~~~---~LA~Gs~dg~I~iw~~~ 65 (1107)
+.+.++.|+|... +||....-|+|.|+|..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 3578999998655 99999999999999986
No 451
>PHA03098 kelch-like protein; Provisional
Probab=74.79 E-value=46 Score=40.55 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCCcEEEEEecCC-----cEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccC------ceEE
Q 001287 493 SVDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF------GLVY 561 (1107)
Q Consensus 493 ~~~~~laTgs~Dg-----tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~d------g~V~ 561 (1107)
-++.+++.|+.++ ++..||..+........+.. ...+| ++ ..-++++++.||.+ ..+.
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-----~r~~~-----~~-~~~~~~iYv~GG~~~~~~~~~~v~ 409 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-----PRYNP-----CV-VNVNNLIYVIGGISKNDELLKTVE 409 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-----CCccc-----eE-EEECCEEEEECCcCCCCcccceEE
Confidence 4677888887663 47778877766542211110 00111 11 22367777777742 3466
Q ss_pred EEEecCC
Q 001287 562 IYNLNGS 568 (1107)
Q Consensus 562 vw~~~~~ 568 (1107)
.|+..+.
T Consensus 410 ~yd~~t~ 416 (534)
T PHA03098 410 CFSLNTN 416 (534)
T ss_pred EEeCCCC
Confidence 6666543
No 452
>PHA03098 kelch-like protein; Provisional
Probab=73.17 E-value=1.1e+02 Score=37.33 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=14.2
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCee
Q 001287 87 NQGFLISITND-----NEIQVWSLESRSL 110 (1107)
Q Consensus 87 d~~~L~S~s~d-----~~I~vWDl~s~~~ 110 (1107)
++...+.++.+ +.+..||..+++-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 44444555543 3578888877643
No 453
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=72.48 E-value=1.1e+02 Score=33.99 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=44.2
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCc-ceeeeCCCCCCEEEEEEEeCCCEEEEEeCC-CcEEEEEcC
Q 001287 44 DHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITND-NEIQVWSLE 106 (1107)
Q Consensus 44 sp~~~~LA~Gs~dg~I~iw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d-~~I~vWDl~ 106 (1107)
+-++++|+.|+++|.. +.+.+.. .......+..+|+++...+....|++.+.. +.++++|+.
T Consensus 10 ~~~~~~lL~GTe~Gly-~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 10 TCDGKWLLVGTEEGLY-VLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred ccCCcEEEEEeCCceE-EEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 3345799999999954 4446542 234444556799999999988888888743 349999983
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.98 E-value=75 Score=41.58 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=27.7
Q ss_pred ccCCCeEEEEEecCCCEEEEEcCCCcEEEEEee
Q 001287 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1107)
Q Consensus 115 ~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d 147 (1107)
..+.....++|++...++++|...|.|+++...
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEeccc
Confidence 455667889999999999999999999887644
No 455
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=71.76 E-value=1.9e+02 Score=33.14 Aligned_cols=181 Identities=19% Similarity=0.210 Sum_probs=97.1
Q ss_pred CCcccccccceeeeec--CCCCCeEEEEEc--CCCCE--EEEEECC----CcEEEEeCCCc--ceeeeCC--C-----CC
Q 001287 17 GSLTAADLNLRIAVHY--GIPATASILAFD--HIQRL--LAIATLD----GRIKVIGGDGI--EGLLISP--S-----QL 77 (1107)
Q Consensus 17 ~~l~~~~~~~~~~~~~--G~~~~i~~lafs--p~~~~--LA~Gs~d----g~I~iw~~~~~--~~~~~~~--h-----~~ 77 (1107)
++|...+++-+....+ |-+..|. +.+. -.++. ||+++.- ..|++|.++.. .+..... + -.
T Consensus 78 ~GL~VYdL~Gk~lq~~~~Gr~NNVD-vrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~ 156 (381)
T PF02333_consen 78 GGLYVYDLDGKELQSLPVGRPNNVD-VRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLS 156 (381)
T ss_dssp TEEEEEETTS-EEEEE-SS-EEEEE-EEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSS
T ss_pred CCEEEEcCCCcEEEeecCCCcceee-eecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccc
Confidence 5666667766666655 3332221 2221 12332 5566532 46999988532 2222221 1 12
Q ss_pred CEEEEEEEe---CC-CEEEEEeCCCcEEEEEcC---CC----eeeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEe
Q 001287 78 PYKNLEFLQ---NQ-GFLISITNDNEIQVWSLE---SR----SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1107)
Q Consensus 78 ~V~~l~fs~---d~-~~L~S~s~d~~I~vWDl~---s~----~~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~ 146 (1107)
.+..+|+-. ++ .+++....+|.+..|-+. .+ +++..+...+.+..+.++....+|++|-++.- ||.|
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G--IW~y 234 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVG--IWRY 234 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTE--EEEE
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccE--EEEE
Confidence 356777743 23 366777788988888774 33 35666777789999999999999999999974 5877
Q ss_pred ecCC--CceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEE--CCCeEEEEEccCC
Q 001287 147 DADE--GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY--ENALVILWDVSEA 210 (1107)
Q Consensus 147 d~~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~--~dg~V~vwdl~~~ 210 (1107)
+.+. +...+.-..+.+..+ ...|.+|+.-...+++-.++++ .++...||+....
T Consensus 235 ~Aep~~~~~~~~v~~~~g~~l----------~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 235 DAEPEGGNDRTLVASADGDGL----------VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ESSCCC-S--EEEEEBSSSSB-----------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ecCCCCCCcceeeeccccccc----------ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 7642 111111011222111 1457777664333444333333 4668999998763
No 456
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.40 E-value=2.9e+02 Score=35.12 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=45.6
Q ss_pred CCEEEEEECCCcEEEEeCCCcceeeeCCCCCC---------EEEEEEEe----------------CCCEEEEEeCCCcEE
Q 001287 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLP---------YKNLEFLQ----------------NQGFLISITNDNEIQ 101 (1107)
Q Consensus 47 ~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~---------V~~l~fs~----------------d~~~L~S~s~d~~I~ 101 (1107)
+..|.+++.++.|.-.|..+.+.+-......+ .+.+.+.. ++.+++..+.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777777777777655444422221111 12233321 345888899999999
Q ss_pred EEEcCCCeeeeeeccCC
Q 001287 102 VWSLESRSLACCLKWES 118 (1107)
Q Consensus 102 vWDl~s~~~~~~~~~~~ 118 (1107)
-.|.++|+.+..+...+
T Consensus 274 ALDA~TGk~~W~fg~~G 290 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG 290 (764)
T ss_pred EEECCCCCEEEEecCCC
Confidence 99999999887664433
No 457
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=70.62 E-value=6.6 Score=28.33 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=20.5
Q ss_pred EEEEEcCCceEEEEeCCCcceec
Q 001287 684 VIIVLFKDAKISIVGGSSENMIS 706 (1107)
Q Consensus 684 ~L~s~s~Dg~v~v~d~~~g~~i~ 706 (1107)
.+++++.||.|+.+|.+||+.+=
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEE
Confidence 47888999999999999999873
No 458
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=69.52 E-value=1.4e+02 Score=35.70 Aligned_cols=157 Identities=11% Similarity=0.141 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCe----EEEEEecCCC
Q 001287 55 LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNI----TAFSVISGSH 130 (1107)
Q Consensus 55 ~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~V----t~l~~~~~~~ 130 (1107)
..+.+.++|..+..+-...........+.+.+||.+|+... +.+...|+..+ ++.....+..- ..+...|+|+
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECCCCC
Confidence 44666667766654332222111111166778877666554 88888998654 44444433322 4566678888
Q ss_pred EEEEEcC-------CC----cEEEEEeecCCCceeecceeecccccc-cc-------cCC---CCCCC--CCeEEEEccc
Q 001287 131 FMYIGDE-------NG----LMSVIKYDADEGKLFQLPYNISADALS-EK-------AGF---PLLSH--QPVVGVLPHP 186 (1107)
Q Consensus 131 ~l~~g~~-------dg----~V~vw~~d~~~~~l~~~~~~i~~~~~~-~~-------~~~---~~~~~--~~V~~v~f~P 186 (1107)
+|+.+.. .+ .=.|..++ .+|+++.. +.+..|--. +. ... ..... --+.++.+.|
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~-wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWE-WDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEE-EEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEE-EehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 8877762 00 00133444 44555542 333322100 00 000 01111 2478999987
Q ss_pred CCCCCEEEEEECCC-eEEEEEccCCEEEEEeCC
Q 001287 187 NSSGNRVLIAYENA-LVILWDVSEAQIIFVGGG 218 (1107)
Q Consensus 187 ~~~~~~ll~~~~dg-~V~vwdl~~~~~~~~~g~ 218 (1107)
. ++. |++.++.- .|...|.+++++.+..+.
T Consensus 281 ~-dd~-iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 281 S-DDS-IIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp T-TTE-EEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred C-CCe-EEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 5 343 66666655 888899999999998875
No 459
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=69.34 E-value=1.8e+02 Score=31.95 Aligned_cols=162 Identities=16% Similarity=0.191 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCCCE------------EEEEECCCcEEEEeC--CCc----ceeee--CCCCCCEEEEEEEeC--CCEEEE
Q 001287 36 ATASILAFDHIQRL------------LAIATLDGRIKVIGG--DGI----EGLLI--SPSQLPYKNLEFLQN--QGFLIS 93 (1107)
Q Consensus 36 ~~i~~lafsp~~~~------------LA~Gs~dg~I~iw~~--~~~----~~~~~--~~h~~~V~~l~fs~d--~~~L~S 93 (1107)
+.++-+.|+....+ ...+++||+|.-|.. +.. ..+.. .....-++.|++..+ +.+|..
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 45666777644433 466889999999985 111 22222 223446788998754 567777
Q ss_pred EeC-CCcEEEEEcCCCeeeeeeccCC----------C---------eEEEEEecCCCEEEEEcCCCcEEEEEeecCCCce
Q 001287 94 ITN-DNEIQVWSLESRSLACCLKWES----------N---------ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1107)
Q Consensus 94 ~s~-d~~I~vWDl~s~~~~~~~~~~~----------~---------Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l 153 (1107)
+.- .++|.|+|-.-..+...-.+.. . |+...-+++...=+.|...|.|-+++.+ |.+
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~---G~l 233 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN---GQL 233 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC---CcE
Confidence 764 7889999876554321101100 1 1111112222222333445666666655 566
Q ss_pred eecceeecccccccccCCCCCCCCCeEEEEcccCC----CCCEEEEEECCCeEEEEEccCCEEE
Q 001287 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS----SGNRVLIAYENALVILWDVSEAQII 213 (1107)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~----~~~~ll~~~~dg~V~vwdl~~~~~~ 213 (1107)
++. +... ........|+.-|.. .+.+|+--+.||+|..||..+++.+
T Consensus 234 ~~r---~as~----------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 234 LRR---VASS----------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred EEE---eccC----------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 642 3211 112445556555532 3554555678999999999887654
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.62 E-value=74 Score=37.09 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=60.5
Q ss_pred CCeEEEEEEeCCCeEEEeccCceEEEEE---ecCCCC-CccceeeccCcCcceecccCCcceeEEE------E-eecCcC
Q 001287 537 APVSTLSFCFINSSLAVGNEFGLVYIYN---LNGSLD-AKNFLFVLETKSEVHALPEGKISLCRAV------F-SLVNSP 605 (1107)
Q Consensus 537 ~~Vt~l~fspd~~~Lasg~~dg~V~vw~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~-~~h~~~ 605 (1107)
..|..+..++.|..++-.+.+|.+.++- |..... +..... ..|... | ....-.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~----------------v~CRt~~i~~~~ftss~~lt 167 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKST----------------VNCRTTPVAERFFTSSTSLT 167 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCce----------------EEEEeecccceeeccCCcee
Confidence 3578889999999999999999998887 433221 111000 112111 1 112234
Q ss_pred EEEEEEcCCC---CEEEEEeCCCeEEEEEcCCCeEEEEeec
Q 001287 606 VRALQFTSSG---AKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1107)
Q Consensus 606 Vt~la~sp~~---~~la~Gs~dg~V~iwd~~~~~~~~~~~~ 643 (1107)
+...+|+|++ .+|.+=+.|..|+|||+...+-+|...-
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 6678999976 6788888999999999998877765443
No 461
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=67.55 E-value=36 Score=36.47 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=49.2
Q ss_pred cCcCEEEEEEcC------C-CCEEEEEeCCCeEEEEEcCCCeEEEEeecCCCCCCceEEEEEeecccCccccCCCCCCCC
Q 001287 602 VNSPVRALQFTS------S-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1107)
Q Consensus 602 h~~~Vt~la~sp------~-~~~la~Gs~dg~V~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~~~~~~~~~~~p~~~~~ 674 (1107)
....||||+--. + -..|++|+++|.|.|+|.+.-.++.+... .+-||.=.......
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~l---psvPv~i~~~G~~d-------------- 237 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQL---PSVPVFISVSGQYD-------------- 237 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEec---CCCceEEEEEeeee--------------
Confidence 355677776522 1 15799999999999999999988877655 23333211222110
Q ss_pred CCCCCCCccEEEEEcCCceEEEE
Q 001287 675 EVPVNPAEEVIIVLFKDAKISIV 697 (1107)
Q Consensus 675 ~~~~~~~~~~L~s~s~Dg~v~v~ 697 (1107)
-.+..+++++.||.|+.+
T Consensus 238 -----evdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 238 -----EVDYRIVVACRDGKIYTI 255 (257)
T ss_pred -----ccceEEEEEeCCCEEEEE
Confidence 024569999999999876
No 462
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=67.33 E-value=2.2e+02 Score=32.10 Aligned_cols=119 Identities=15% Similarity=0.308 Sum_probs=66.5
Q ss_pred CCCEEEEEEEeCCCEEEEEeCCCc------EEEEEcCCC-----e--eeee--e-ccCC--------CeEEEEEecCCCE
Q 001287 76 QLPYKNLEFLQNQGFLISITNDNE------IQVWSLESR-----S--LACC--L-KWES--------NITAFSVISGSHF 131 (1107)
Q Consensus 76 ~~~V~~l~fs~d~~~L~S~s~d~~------I~vWDl~s~-----~--~~~~--~-~~~~--------~Vt~l~~~~~~~~ 131 (1107)
-+.++.|.+.++++.++++|.++. +...++... . .... + ...+ ..-++++.+++ .
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-S 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-C
Confidence 357899999987788999998888 666665541 1 1111 1 1111 34477884444 4
Q ss_pred EEEEcCCC-----cEEEEEeecCCCceeecceeecccccccccC-CCCCCCCCeEEEEcccCCCCCEEEEEECC
Q 001287 132 MYIGDENG-----LMSVIKYDADEGKLFQLPYNISADALSEKAG-FPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1107)
Q Consensus 132 l~~g~~dg-----~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~V~~v~f~P~~~~~~ll~~~~d 199 (1107)
++++++.+ .=+|+.++.+ |++.. .+.+|........+ ..........+++.+| +|..|+++...
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~-~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~~~~E~ 167 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIR-RFPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLFAAMES 167 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-Ccccc-eEccccccccccCccccccCCCCeEEEEECC--CCCEEEEEECc
Confidence 55555554 1267888765 55543 23344321100000 1123346789999988 67766666543
No 463
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=66.75 E-value=5.3 Score=48.84 Aligned_cols=65 Identities=6% Similarity=0.111 Sum_probs=49.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEE-----------EEeCCCEEEEEeCCCcEEEEEc
Q 001287 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLE-----------FLQNQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~-----------fs~d~~~L~S~s~d~~I~vWDl 105 (1107)
+-|-+..-++..|-.+|.|++...+..+.-++..|..+++.++ .||||..++..+.||.+++|-+
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 3445566888999999999998877665555555887776655 4688888888888888888875
No 464
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.72 E-value=8.2 Score=26.51 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=21.1
Q ss_pred ccEEEEEcCCceEEEEeCCCccee
Q 001287 682 EEVIIVLFKDAKISIVGGSSENMI 705 (1107)
Q Consensus 682 ~~~L~s~s~Dg~v~v~d~~~g~~i 705 (1107)
+..+++++.+|.+..+|.++|+.+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEE
Confidence 346999999999999999999875
No 465
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=62.28 E-value=3e+02 Score=31.96 Aligned_cols=110 Identities=6% Similarity=0.031 Sum_probs=53.1
Q ss_pred EEEEEeCCCEEEEEeCCCcEEEEEcCCCe-eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeeccee
Q 001287 81 NLEFLQNQGFLISITNDNEIQVWSLESRS-LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYN 159 (1107)
Q Consensus 81 ~l~fs~d~~~L~S~s~d~~I~vWDl~s~~-~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~ 159 (1107)
.+..++|+.+++.+...+.++-||--... ..........++++.+.+++..++++ ..|.+ ++..+. +..-.. +.
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~--G~~~~~-~~ 317 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGT--GLTEED-FD 317 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCC--CCcccc-cc
Confidence 34455665444444333333334432211 11222344678899998888877766 45544 233222 211000 00
Q ss_pred ecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEE
Q 001287 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1107)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vw 205 (1107)
+..... ......+..+.|.+ ++. +++++.+|.+...
T Consensus 318 f~~~~~-------~~~~~~l~~v~~~~--d~~-~~a~G~~G~v~~s 353 (398)
T PLN00033 318 FEEADI-------KSRGFGILDVGYRS--KKE-AWAAGGSGILLRS 353 (398)
T ss_pred eeeccc-------CCCCcceEEEEEcC--CCc-EEEEECCCcEEEe
Confidence 110000 00113488898854 565 7888888876554
No 466
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=61.73 E-value=1.9e+02 Score=33.19 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=33.5
Q ss_pred CEEEEEEEeCCCEEEEEe-----------CCC-cEEEEEcCC--Ceee--eee-ccCCCeEEEEEecCCCEEEEEcCC
Q 001287 78 PYKNLEFLQNQGFLISIT-----------NDN-EIQVWSLES--RSLA--CCL-KWESNITAFSVISGSHFMYIGDEN 138 (1107)
Q Consensus 78 ~V~~l~fs~d~~~L~S~s-----------~d~-~I~vWDl~s--~~~~--~~~-~~~~~Vt~l~~~~~~~~l~~g~~d 138 (1107)
....|+|.++|..+++-. ..+ .|.+++-.. ++.- ..+ ..-...+.+++.+++ |++++..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 456778888876655542 122 677776543 2221 222 222356788888888 6666555
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=60.87 E-value=32 Score=24.96 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=26.9
Q ss_pred eCCCEEEEEe-CCCcEEEEEcCCCeeeeeeccCCCeEEEE
Q 001287 86 QNQGFLISIT-NDNEIQVWSLESRSLACCLKWESNITAFS 124 (1107)
Q Consensus 86 ~d~~~L~S~s-~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~ 124 (1107)
|++++|+.+. .++.|.++|..+++.+..+........+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 4667776665 47889999999998887775443333443
No 468
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=60.71 E-value=2.9e+02 Score=31.21 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEE
Q 001287 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVY 561 (1107)
Q Consensus 494 ~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~ 561 (1107)
.+.++++....+.|...++....-. . .. ...+......+..|++.|||.++++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~--~----~~-~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSV--T----EE-EEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEE--E----EE-EEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCc--c----ce-EEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4446777776666666665433210 0 00 011345555899999999999999888888763
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=60.28 E-value=21 Score=41.19 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=45.8
Q ss_pred CCCEEEEEECCCcEEEEeCCCccee-eeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEc
Q 001287 46 IQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1107)
Q Consensus 46 ~~~~LA~Gs~dg~I~iw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl 105 (1107)
...++|+|+..|.||+||.-+.... .+.+-...|..+..+.+|.++++.| .+.|-+-|+
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~ 631 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDV 631 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEec
Confidence 4579999999999999998666544 3444566899999999999998888 444555554
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.11 E-value=84 Score=40.96 Aligned_cols=161 Identities=14% Similarity=0.202 Sum_probs=86.3
Q ss_pred CCCCEEEEEECCCcEEEEeCCC-cceeeeCCCCCCEEEEE--------EEeCCCEEEEEeCCCcEEEEEcCCCee-----
Q 001287 45 HIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLE--------FLQNQGFLISITNDNEIQVWSLESRSL----- 110 (1107)
Q Consensus 45 p~~~~LA~Gs~dg~I~iw~~~~-~~~~~~~~h~~~V~~l~--------fs~d~~~L~S~s~d~~I~vWDl~s~~~----- 110 (1107)
+.++.-+ +-|..+.+|+.+. .+.-..-+-...|..+. |-|.=.+|+..++--+|.++-+.-.+.
T Consensus 89 eI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 89 EIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred hhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence 3444443 4588999999865 33333333333344333 344445677777777777776533321
Q ss_pred --eeee--cc-CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeec--ceeeccccc---cccc-CCCCCCCCCe
Q 001287 111 --ACCL--KW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL--PYNISADAL---SEKA-GFPLLSHQPV 179 (1107)
Q Consensus 111 --~~~~--~~-~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~--~~~i~~~~~---~~~~-~~~~~~~~~V 179 (1107)
...+ .. ...|+|+....+|+ ++.++.||.++-.-|...++=..+. .+.+....+ ...+ ..+..+.++|
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI 245 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI 245 (1311)
T ss_pred ccccceeeecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc
Confidence 1222 12 34688888555555 4555567767655565543311110 011111000 0000 0112334688
Q ss_pred EEEEcccCCCCCEEEEEECCCeEEEEEccCC
Q 001287 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1107)
Q Consensus 180 ~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~ 210 (1107)
..+.. ......+.+-++.|+|.+||+...
T Consensus 246 ~qi~I--D~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 246 RQITI--DNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeEe--ccccceeeeeccCceEEEEEccCC
Confidence 88888 334556888899999999999873
No 471
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=59.84 E-value=3.3e+02 Score=32.01 Aligned_cols=145 Identities=9% Similarity=0.038 Sum_probs=80.3
Q ss_pred EEeCCCEEEE-EeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEecCCC-------EEEEEcCCCcEEEEEeec--CCCce
Q 001287 84 FLQNQGFLIS-ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSH-------FMYIGDENGLMSVIKYDA--DEGKL 153 (1107)
Q Consensus 84 fs~d~~~L~S-~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~~~~-------~l~~g~~dg~V~vw~~d~--~~~~l 153 (1107)
...+...|+. +...+.+.=-|++-|+++........| -+.+.|..+ .-++|-++.+| +.+|. ...++
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~sv--FrIDPR~~gNKi 551 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSV--FRIDPRARGNKI 551 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccce--EEecccccCCce
Confidence 3344444443 334566888889999988887666655 566666542 34567777655 55554 22233
Q ss_pred eecceeecccccccccCCCCCCCCCeEEEEccc---CCCCCEEEEEECCCeEEEEEccCCEEEEEeCCccccccccccCC
Q 001287 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHP---NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1107)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P---~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~~~ 230 (1107)
.... .. +.++---|+. +..| ++++|+..|.|++||--..+.....-
T Consensus 552 ~v~e--sK---------------dY~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP------------- 600 (776)
T COG5167 552 KVVE--SK---------------DYKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALP------------- 600 (776)
T ss_pred eeee--eh---------------hccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCc-------------
Confidence 2110 00 1111111111 2234 59999999999999954433321110
Q ss_pred CCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCC
Q 001287 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1107)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~ 280 (1107)
+. ...|..+. .+.+|.+|++.|. ..|.+-|+.
T Consensus 601 ------~l----------G~aIk~id-vta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 601 ------GL----------GDAIKHID-VTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ------cc----------ccceeeeE-eecCCcEEEEeec-ceEEEEecc
Confidence 00 23455555 3478999887776 456666764
No 472
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=59.41 E-value=2.7e+02 Score=30.43 Aligned_cols=168 Identities=11% Similarity=0.151 Sum_probs=88.7
Q ss_pred eeeeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---cceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEE
Q 001287 27 RIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1107)
Q Consensus 27 ~~~~~~G~~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~---~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vW 103 (1107)
..+-|+| ..+++++..-+-.+++.|..=-..-+|+... ...+..-.-.+-+..+.|+.+ +...+..+.-++|.
T Consensus 36 ~~vghfg--~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~--yvyvad~ssGL~Iv 111 (370)
T COG5276 36 AYVGHFG--KGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEE--YVYVADWSSGLRIV 111 (370)
T ss_pred EEeeecc--CCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEeccc--EEEEEcCCCceEEE
Confidence 3444444 6777777665555554443211222343321 112222223445667777765 55566667779999
Q ss_pred EcCCCe---eeeeeccCCCeEEEEEecCCCEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeE
Q 001287 104 SLESRS---LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1107)
Q Consensus 104 Dl~s~~---~~~~~~~~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1107)
|+.+-. ++..+...+--.+ +.-.+++.++++.+.-.-+.++...+.-...-.|..++- .-.
T Consensus 112 DIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~--------------d~~ 175 (370)
T COG5276 112 DISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG--------------DTH 175 (370)
T ss_pred eccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC--------------Cce
Confidence 997764 3333333333333 444689999998443344666654222222112333321 112
Q ss_pred EEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCC
Q 001287 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1107)
Q Consensus 181 ~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~ 218 (1107)
.++. .|++-..++.|+-+.+-|++...-..+.+|
T Consensus 176 ~v~I----SGn~AYvA~~d~GL~ivDVSnp~sPvli~~ 209 (370)
T COG5276 176 DVAI----SGNYAYVAWRDGGLTIVDVSNPHSPVLIGS 209 (370)
T ss_pred eEEE----ecCeEEEEEeCCCeEEEEccCCCCCeEEEE
Confidence 3333 466677888888888999887644444443
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=58.81 E-value=1.2e+02 Score=36.72 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCcceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcC
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~ 106 (1107)
...++++.-+|.++-++.|..||.|++|+.......-+.....|-..|.|...| |+++++|..+--|.-.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc
Confidence 345778888999999999999999999997432221222333455667788777 8888888888888643
No 474
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=58.59 E-value=20 Score=23.76 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEe
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIG 63 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~ 63 (1107)
.|.+++..+ +++|+++..+.+|||.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 477788774 7999999999999984
No 475
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=57.48 E-value=28 Score=42.65 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=24.8
Q ss_pred CccEEEEEcCCceEEEEeCCCcceecCC
Q 001287 681 AEEVIIVLFKDAKISIVGGSSENMISSS 708 (1107)
Q Consensus 681 ~~~~L~s~s~Dg~v~v~d~~~g~~i~~~ 708 (1107)
+..+|++.+.|+++++||..++.++.+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4788999999999999999999987654
No 476
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.81 E-value=1.1e+02 Score=38.81 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=48.2
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCccee----e-------eC-CCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC
Q 001287 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGL----L-------IS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1107)
Q Consensus 41 lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~----~-------~~-~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~ 108 (1107)
+++..-|+.|.+|+.||.+++|.......- . .. -+..+|..|...+...+|+..+ |+.|.+.++...
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCcc
Confidence 445556899999999999999987443111 1 00 1356788888877656666665 888888888776
Q ss_pred eee
Q 001287 109 SLA 111 (1107)
Q Consensus 109 ~~~ 111 (1107)
+..
T Consensus 99 ~~~ 101 (877)
T KOG2063|consen 99 EPV 101 (877)
T ss_pred ccc
Confidence 553
No 477
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=56.80 E-value=1.2e+02 Score=34.33 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCcc--ee-e----eCCCCCCEEEEEEEeC
Q 001287 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GL-L----ISPSQLPYKNLEFLQN 87 (1107)
Q Consensus 37 ~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~--~~-~----~~~h~~~V~~l~fs~d 87 (1107)
.+..|+|.|++++++ +...|+|++++.++.. .+ . ..........++|+|+
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 468899999988765 5779999999955443 11 1 1234557899999994
No 478
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=56.49 E-value=19 Score=36.40 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001287 1052 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1106 (1107)
Q Consensus 1052 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~~~~~ 1106 (1107)
+.-+.+++.+.++-+|+|||..+-+++..|-..+.=|-.-|+. +...-|||
T Consensus 140 e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk----~n~~~~~~ 190 (190)
T COG5143 140 ETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKK----SNLCCLIN 190 (190)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH----hhhhheeC
Confidence 4458999999999999999999999999999998888777654 44445664
No 479
>PHA02790 Kelch-like protein; Provisional
Probab=56.44 E-value=4.2e+02 Score=31.73 Aligned_cols=93 Identities=9% Similarity=-0.024 Sum_probs=41.5
Q ss_pred CCCEEEEEECCC-----cEEEEeCCCcceeeeCCCCCCE--EEEEEEeCCCEEEEEeCC--CcEEEEEcCCCeeeeeecc
Q 001287 46 IQRLLAIATLDG-----RIKVIGGDGIEGLLISPSQLPY--KNLEFLQNQGFLISITND--NEIQVWSLESRSLACCLKW 116 (1107)
Q Consensus 46 ~~~~LA~Gs~dg-----~I~iw~~~~~~~~~~~~h~~~V--~~l~fs~d~~~L~S~s~d--~~I~vWDl~s~~~~~~~~~ 116 (1107)
++.+.++|+.++ .+..||..........+-..+- .+++ .-++...+.++.+ ..+..||..+.+-...-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 356667777543 3556666544433322211111 1122 2344444445432 4588898776643322222
Q ss_pred CCCeEE-EEEecCCCEEEEEcCCC
Q 001287 117 ESNITA-FSVISGSHFMYIGDENG 139 (1107)
Q Consensus 117 ~~~Vt~-l~~~~~~~~l~~g~~dg 139 (1107)
+.+... ....-+++..++|+.++
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~ 373 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSE 373 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCC
Confidence 222212 12223455555666443
No 480
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.78 E-value=2.3e+02 Score=32.66 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=65.4
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeC--CC--cceeeeCCCCCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeee---
Q 001287 39 SILAFDHIQRLLAIATLDGRIKVIGG--DG--IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA--- 111 (1107)
Q Consensus 39 ~~lafsp~~~~LA~Gs~dg~I~iw~~--~~--~~~~~~~~h~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~--- 111 (1107)
+-+-||...+.|..- ..|.+.=|-. .+ .-.-+-....++|.++.||+|.+.|+.--.+++|.+.+....+..
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 346676555544333 3444554543 22 222233445679999999999999999999999999998443222
Q ss_pred -eeecc-CCCeEEEEEecCCCEEEEEcCCCcEEEEEeecC
Q 001287 112 -CCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1107)
Q Consensus 112 -~~~~~-~~~Vt~l~~~~~~~~l~~g~~dg~V~vw~~d~~ 149 (1107)
...+. ...|..+.|..... +|.-...| +-++..+.+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPE 142 (657)
T ss_pred HHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchh
Confidence 11122 23589999987644 44444444 455665543
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.41 E-value=1.2e+02 Score=39.64 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=78.8
Q ss_pred ecCCcEEEEeCCCC-ceeEEEeeccceeeeeecCCCCCeEEEE--------EEeCCCeEEEeccCceEEEEEecCCCCCc
Q 001287 502 YHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLS--------FCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1107)
Q Consensus 502 s~DgtIriWd~~~~-~l~~~~~l~~~~~~~~l~~h~~~Vt~l~--------fspd~~~Lasg~~dg~V~vw~~~~~~~~~ 572 (1107)
.-|..+.+|++..+ .+.. .++-...|..+. |-|.=++|.+...--.|.|+-+.......
T Consensus 96 TiDn~L~lWny~~~~e~~~------------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~ 163 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAE------------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTG 163 (1311)
T ss_pred EeCCeEEEEEcCCCCcccc------------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccC
Confidence 46889999999873 3331 222223444443 44444566666666678888765442211
Q ss_pred cc-eeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEeec-CCCCCCc
Q 001287 573 NF-LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD-ISGSSSP 650 (1107)
Q Consensus 573 ~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~~~~~~~~~~~~-~~~h~~~ 650 (1107)
.. .|. -...+......|+|+....+|+.+.+| .||.|+=+-.+...-.+..++ -..++..
T Consensus 164 ~~~~f~-----------------~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s 225 (1311)
T KOG1900|consen 164 ELSIFN-----------------TSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKS 225 (1311)
T ss_pred cccccc-----------------cceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchh
Confidence 10 000 001122335678999988888766555 556343322222111100000 0001110
Q ss_pred eEEEEEeecccCccccCCC---CCCCCCCCCCCCccEEEEEcCCceEEEEeCCC
Q 001287 651 IISMTWTEFKNTHSLAKNP---NHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 651 V~~l~fs~~~~~~~~~~~p---~~~~~~~~~~~~~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
+. +.... +...-| .+.......+....+|++.++.|+|.+||...
T Consensus 226 ~l----s~lvP--s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 226 VL----SSLVP--SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HH----HHhhh--hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 00 00000 011111 11122223345588999999999999999764
No 482
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.03 E-value=19 Score=35.30 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHH
Q 001287 1055 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANE 1094 (1107)
Q Consensus 1055 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~ 1094 (1107)
.++...-..+.||||||..|-+|.+.+-...+-|-+.|+.
T Consensus 151 iiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK 190 (198)
T KOG0861|consen 151 IILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKK 190 (198)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3455556677899999999999999999999989888864
No 483
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.68 E-value=70 Score=36.64 Aligned_cols=100 Identities=9% Similarity=0.090 Sum_probs=67.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCccee--eeCCC---CCCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCC-
Q 001287 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL--LISPS---QLPYKNLEFLQNQGFLISITNDNEIQVWSLESR- 108 (1107)
Q Consensus 35 ~~~i~~lafsp~~~~LA~Gs~dg~I~iw~~~~~~~~--~~~~h---~~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~- 108 (1107)
.+.|.++.||+|.+.||+--.|..|.+++..+.+.. ....| +..|...+|+.+ .-++-++..| |.++-+...
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence 458999999999999999999999999998444333 22222 235778888776 5566666444 566654433
Q ss_pred -eeeeeeccCCCeEEEEEecCCCEEEEEc
Q 001287 109 -SLACCLKWESNITAFSVISGSHFMYIGD 136 (1107)
Q Consensus 109 -~~~~~~~~~~~Vt~l~~~~~~~~l~~g~ 136 (1107)
.+.-...+...|.-..|.++.+.++.++
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeec
Confidence 2222235667788888888887655444
No 484
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=48.47 E-value=5.7e+02 Score=32.66 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCceeEEEeecCCCCEEEEEEcCCcEEEEeCCCCC
Q 001287 249 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1107)
Q Consensus 249 ~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~~~ 283 (1107)
.+.|.+++-. .-+..++..+.||+|.++|..+.+
T Consensus 259 ~~~V~si~~~-~~~~~v~~~~~DGsI~~~dr~t~~ 292 (753)
T PF11635_consen 259 NKRVVSITSP-ELDIVVAFAFSDGSIEFRDRNTMK 292 (753)
T ss_pred CCeEEEEEec-ccCcEEEEEEcCCeEEEEecCcch
Confidence 6788898843 667789999999999999988764
No 485
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=48.09 E-value=1e+02 Score=35.28 Aligned_cols=159 Identities=17% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCEEEEEEEeCCCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeE--------EEEEecCCCEEEEEcCCCcEEEEEeec
Q 001287 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNIT--------AFSVISGSHFMYIGDENGLMSVIKYDA 148 (1107)
Q Consensus 77 ~~V~~l~fs~d~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt--------~l~~~~~~~~l~~g~~dg~V~vw~~d~ 148 (1107)
.+|..+-..|||+.|...+. +++.|+++.++.+....-.+..-. ++..-..+.-++++++||.|..|---.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Q ss_pred CCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEccCCEEEEEeCCcccccccccc
Q 001287 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVV 228 (1107)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl~~~~~~~~~g~~~~~~~~~~~ 228 (1107)
+++.....-.+...... .++..+.. ..+.+-++.-+.+|++.++.-...+.......
T Consensus 300 ~~~~p~l~h~R~f~l~p-----------a~~~~l~p--e~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---------- 356 (733)
T COG4590 300 RDGQPHLNHIRNFKLAP-----------AEVQFLLP--ETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---------- 356 (733)
T ss_pred cCCCCcceeeeccccCc-----------ccceeecc--ccccceEEEEcCCCceeeeecccCcceehhhh----------
Q ss_pred CCCCCCCCccccCCCCCCCCCCceeEEEeecCCCCEEEEEEcCCcEEEEeCCC
Q 001287 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1107)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~Vtsl~w~spdg~~l~sg~~dG~I~lWd~~~ 281 (1107)
-..+.-+. +||++.++++ ...|.|+++.+++
T Consensus 357 --------------------~~~~~~~~-~Sp~~~~Ll~-e~~gki~~~~l~N 387 (733)
T COG4590 357 --------------------YQAPQLVA-MSPNQAYLLS-EDQGKIRLAQLEN 387 (733)
T ss_pred --------------------hcCcceee-eCcccchhee-ecCCceEEEEecC
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=47.23 E-value=6.2e+02 Score=32.43 Aligned_cols=134 Identities=15% Similarity=0.105 Sum_probs=74.8
Q ss_pred CCCCCEEEEEEE---e---CCCEEEEEeCCCcEEEEEcCCCe---------------eeeeecc----CCCeEEEEEecC
Q 001287 74 PSQLPYKNLEFL---Q---NQGFLISITNDNEIQVWSLESRS---------------LACCLKW----ESNITAFSVISG 128 (1107)
Q Consensus 74 ~h~~~V~~l~fs---~---d~~~L~S~s~d~~I~vWDl~s~~---------------~~~~~~~----~~~Vt~l~~~~~ 128 (1107)
.-..||..|+|. . ....++.+=....+.|....-.+ ++..+.+ ..+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456799999998 2 22246666667778887722111 1222221 236778899976
Q ss_pred C-CEEEEEcCCCcEEEEEeecCCCceeecceeecccccccccCCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEEEEc
Q 001287 129 S-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 207 (1107)
Q Consensus 129 ~-~~l~~g~~dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~vwdl 207 (1107)
. ..+|+.+..|.-.||++.... +.....+.+.... ...+.........-..|.|.+ +...|++.... .+.++|+
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~-~~~~~~~~~~~~~-~gsi~~d~~e~s~w~rI~W~~--~~~~lLv~~r~-~l~~~d~ 231 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRP-KRKSSNLRLSRNI-SGSIIFDPEELSNWKRILWVS--DSNRLLVCNRS-KLMLIDF 231 (765)
T ss_pred ccceEEEEeccCcEEEEEecccc-ccCCcceeeccCC-CccccCCCcccCcceeeEecC--CCCEEEEEcCC-ceEEEEC
Confidence 4 689999999999999993211 1110111121111 111101111224556788855 45545555544 4478888
Q ss_pred cCCEE
Q 001287 208 SEAQI 212 (1107)
Q Consensus 208 ~~~~~ 212 (1107)
++...
T Consensus 232 ~~~~~ 236 (765)
T PF10214_consen 232 ESNWQ 236 (765)
T ss_pred CCCCc
Confidence 87755
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.09 E-value=3.4e+02 Score=34.81 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=46.3
Q ss_pred ccCCCCcEEEEEecCCcEEEEeCCCCceeEEEee--ccceeeeeecCCCCCeEEEEEEeCCCeEEEeccCceEEEEEecC
Q 001287 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICAL--DAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1107)
Q Consensus 490 ~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l--~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~~dg~V~vw~~~~ 567 (1107)
++...++.+..|+.||.+.+|.+........... .+......+ +..+|+.|..++.-.+|.+-+ |+.+.++++..
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~--~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~ 97 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEF--SKKPINKLLVCASLELLLILS-DSQIAVHKLPE 97 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhh--ccchhHHHhhcchhcchheec-CCcceeeecCc
Confidence 4666777899999999999998775532211111 000000111 245788888887666665444 66777877765
Q ss_pred C
Q 001287 568 S 568 (1107)
Q Consensus 568 ~ 568 (1107)
-
T Consensus 98 ~ 98 (877)
T KOG2063|consen 98 L 98 (877)
T ss_pred c
Confidence 4
No 488
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=44.94 E-value=85 Score=31.66 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.8
Q ss_pred cCEEEEEEcCCC------CEEEEEeCCCeEEEEEcCCC
Q 001287 604 SPVRALQFTSSG------AKLAVGFECGRVAVLDMNLL 635 (1107)
Q Consensus 604 ~~Vt~la~sp~~------~~la~Gs~dg~V~iwd~~~~ 635 (1107)
..|.+++|||.| -+||+-+.+|.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 479999999965 47899999999999987643
No 489
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=43.85 E-value=4.5 Score=46.21 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred CccccccCCCCCCCCccccCCCCcEEEEEecCCcEEEEeCCCCceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEE
Q 001287 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1107)
Q Consensus 473 ~~~wp~~gg~~~~~~~~~~s~~~~~laTgs~DgtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~La 552 (1107)
++.|...|.. .++.+...+.+.+||++...-+ .--.+-+..-.=+.|++.+..++
T Consensus 79 dm~wDkegdv--------------lavlAek~~piylwd~n~eytq-----------qLE~gg~~s~sll~wsKg~~el~ 133 (615)
T KOG2247|consen 79 DMAWDKEGDV--------------LAVLAEKTGPIYLWDVNSEYTQ-----------QLESGGTSSKSLLAWSKGTPELV 133 (615)
T ss_pred hhhhccccch--------------hhhhhhcCCCeeechhhhhhHH-----------HHhccCcchHHHHhhccCCcccc
Q ss_pred EeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeecCcCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001287 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 553 sg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~Vt~la~sp~~~~la~Gs~dg~V~iwd~ 632 (1107)
.+...|.+.||+.... +.+.+.-.|...++++++.+.+ +.+.++.|..+.+-..
T Consensus 134 ig~~~gn~viynhgts-------------------------R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 134 IGNNAGNIVIYNHGTS-------------------------RRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQ 187 (615)
T ss_pred ccccccceEEEeccch-------------------------hhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhh
Q ss_pred CCCeE
Q 001287 633 NLLSV 637 (1107)
Q Consensus 633 ~~~~~ 637 (1107)
.+...
T Consensus 188 egeta 192 (615)
T KOG2247|consen 188 EGETA 192 (615)
T ss_pred cccee
No 490
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=42.82 E-value=33 Score=24.90 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=16.3
Q ss_pred ccEEEEEcCCceEEEEeCCC
Q 001287 682 EEVIIVLFKDAKISIVGGSS 701 (1107)
Q Consensus 682 ~~~L~s~s~Dg~v~v~d~~~ 701 (1107)
+..|++++.||+|+.+|.+|
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 67899999999999999864
No 491
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=41.48 E-value=70 Score=28.16 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHH---HHhhcccccc
Q 001287 1055 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV---KTMENRKWWK 1106 (1107)
Q Consensus 1055 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~---~~~~~~~~~~ 1106 (1107)
..+...++.+.|+.+|+-+=.++.++|...|++.+..|.+.. ++++.+.||+
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~ 64 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999886 5677788885
No 492
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=39.57 E-value=9.3e+02 Score=30.84 Aligned_cols=88 Identities=17% Similarity=0.071 Sum_probs=50.3
Q ss_pred CCCCCeEEEEEE---e----CCCeEEEeccCceEEEEEecCCCCCccceeeccCcCcceecccCCcceeEEEEeec---C
Q 001287 534 GSRAPVSTLSFC---F----INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV---N 603 (1107)
Q Consensus 534 ~h~~~Vt~l~fs---p----d~~~Lasg~~dg~V~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h---~ 603 (1107)
.-..+|..|.|+ . ..++|++-. .-.+.|+...-... +...... ...-.+.++..+..+ .
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~-----~~~~~~~-----~s~i~~~~l~~i~~~~tgg 145 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRV-----ISSIRSR-----PSRIDPNPLLTISSSDTGG 145 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccc-----cccccCC-----ccccccceeEEechhhcCC
Confidence 556799999998 2 224666554 44566666221110 0000000 000001133333322 3
Q ss_pred cCEEEEEEcCC-CCEEEEEeCCCeEEEEEc
Q 001287 604 SPVRALQFTSS-GAKLAVGFECGRVAVLDM 632 (1107)
Q Consensus 604 ~~Vt~la~sp~-~~~la~Gs~dg~V~iwd~ 632 (1107)
.+...++|+|. .+.||+-+..|+..|||+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEe
Confidence 46788999994 478999999999999999
No 493
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=39.57 E-value=1.7e+02 Score=34.03 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=23.0
Q ss_pred CcCEEEEEEcCCCCEEEEE-eCCCeEEEEEcCCC---eEEEEe
Q 001287 603 NSPVRALQFTSSGAKLAVG-FECGRVAVLDMNLL---SVLFFT 641 (1107)
Q Consensus 603 ~~~Vt~la~sp~~~~la~G-s~dg~V~iwd~~~~---~~~~~~ 641 (1107)
..-||.+.+|.|.++|.+. -.+|.|+-||+..+ +++.++
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv 353 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQV 353 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEE
Confidence 4668999999999988765 57899999999764 444443
No 494
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=39.12 E-value=5.8e+02 Score=28.34 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=38.4
Q ss_pred cEEEEEecCCcEEEEeCCC--CceeEEEeeccceeeeeecCCCCCeEEEEEEeCCCeEEEec-cCceEEEEEecCC
Q 001287 496 RVYLAGYHDGSVRIWDATY--PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN-EFGLVYIYNLNGS 568 (1107)
Q Consensus 496 ~~laTgs~DgtIriWd~~~--~~l~~~~~l~~~~~~~~l~~h~~~Vt~l~fspd~~~Lasg~-~dg~V~vw~~~~~ 568 (1107)
+.|+-|..+|-.. -+.+. ..+. .-.+...|++|...+.-+.|++-+ ....+++|++..-
T Consensus 14 ~~lL~GTe~Gly~-~~~~~~~~~~~-------------kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 14 KWLLVGTEEGLYV-LNISDQPGTLE-------------KLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred cEEEEEeCCceEE-EEcccCCCCeE-------------EecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 5788899888544 34443 2222 113345899999999877766554 4456999998543
No 495
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=39.07 E-value=4.5e+02 Score=31.47 Aligned_cols=25 Identities=4% Similarity=0.119 Sum_probs=16.6
Q ss_pred CccEEEEEcCCceEEEEeCCCccee
Q 001287 681 AEEVIIVLFKDAKISIVGGSSENMI 705 (1107)
Q Consensus 681 ~~~~L~s~s~Dg~v~v~d~~~g~~i 705 (1107)
++.+|+++-.-..|..+|..+|++.
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred CCeEEEEcCcceEEEEEECCCCcEE
Confidence 4566666666679999998888864
No 496
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=39.02 E-value=5e+02 Score=31.25 Aligned_cols=152 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred eEEEE-------EcCCCCEEEEEECCCcEEEEeCCCcc---eeeeCCC-CCCEEEEEEEeCCC--EEEEEeC--CCcEEE
Q 001287 38 ASILA-------FDHIQRLLAIATLDGRIKVIGGDGIE---GLLISPS-QLPYKNLEFLQNQG--FLISITN--DNEIQV 102 (1107)
Q Consensus 38 i~~la-------fsp~~~~LA~Gs~dg~I~iw~~~~~~---~~~~~~h-~~~V~~l~fs~d~~--~L~S~s~--d~~I~v 102 (1107)
+++.+ ...++..+..+..+|.+....+.... .+...+. ....+++.+..+ + +|+.+|. |+.+.-
T Consensus 206 ~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~-g~d~lf~gs~~gds~l~~ 284 (504)
T PF10433_consen 206 WTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKN-GGDYLFVGSEFGDSQLLQ 284 (504)
T ss_dssp EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEEST-T--EEEEEESSS-EEEEE
T ss_pred EEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcC-CCEEEEEEEecCCcEEEE
Q ss_pred EEcCCCeeeeeeccCCCeEEEEEe----cCCC------EEEEEcC---CCcEEEEEeecCCCceeecceeeccccccccc
Q 001287 103 WSLESRSLACCLKWESNITAFSVI----SGSH------FMYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1107)
Q Consensus 103 WDl~s~~~~~~~~~~~~Vt~l~~~----~~~~------~l~~g~~---dg~V~vw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1107)
|....-+++..+.--++|..+++. .... .+++++. +|.++++.....-..+......+++ -
T Consensus 285 ~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v----- 358 (504)
T PF10433_consen 285 ISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-V----- 358 (504)
T ss_dssp EESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-E-----
T ss_pred EeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-c-----
Q ss_pred CCCCCCCCCeEEEEcccCCCCCEEEEEECCCeEEE
Q 001287 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVIL 204 (1107)
Q Consensus 170 ~~~~~~~~~V~~v~f~P~~~~~~ll~~~~dg~V~v 204 (1107)
..+..+...... ..+|++++.+.+..+
T Consensus 359 -------~~iW~l~~~~~~-~~~lv~S~~~~T~vl 385 (504)
T PF10433_consen 359 -------TGIWTLKLSSSD-HSYLVLSFPNETRVL 385 (504)
T ss_dssp -------EEEEEE-SSSSS-BSEEEEEESSEEEEE
T ss_pred -------eEEEEeeecCCC-ceEEEEEcCCceEEE
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=38.85 E-value=92 Score=22.20 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=20.2
Q ss_pred eecCcCEEEEEEcCCCCEEEEEeC-C--CeEEEE
Q 001287 600 SLVNSPVRALQFTSSGAKLAVGFE-C--GRVAVL 630 (1107)
Q Consensus 600 ~~h~~~Vt~la~sp~~~~la~Gs~-d--g~V~iw 630 (1107)
....+.-..-+|||||+.|+..+. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345567788999999998887653 4 554444
No 498
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=38.53 E-value=1.7e+02 Score=31.47 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=53.1
Q ss_pred CCCCEEEEEEEeC-------CCEEEEEeCCCcEEEEEcCCCeeeeeeccCCCeEEEEEec----CCCEEEEEcCCCcEEE
Q 001287 75 SQLPYKNLEFLQN-------QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVIS----GSHFMYIGDENGLMSV 143 (1107)
Q Consensus 75 h~~~V~~l~fs~d-------~~~L~S~s~d~~I~vWDl~s~~~~~~~~~~~~Vt~l~~~~----~~~~l~~g~~dg~V~v 143 (1107)
+...|+|++-... -..|+.++.++.|.|.|-+.-.++..+..++....+.... -..++++++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 4456888886532 2479999999999999999998888887776655655553 3457899999998876
Q ss_pred E
Q 001287 144 I 144 (1107)
Q Consensus 144 w 144 (1107)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 499
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=38.25 E-value=48 Score=29.86 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=38.4
Q ss_pred hhhhhcCCCCCCCCCCCCHHHHHHHhccCCChHHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHH
Q 001287 1022 ERERLLGVPDDAKPRLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFA 1089 (1107)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~ 1089 (1107)
+-|+||.++ ..+.....++||+| + .++.+++|++|.+++ ..+-+||.++..-+++|-
T Consensus 23 ~lEevL~ss--g~~a~~e~~~lR~r---~---~~~Lk~~r~rl~~~~---d~v~~~sk~a~~~tD~yV 79 (104)
T COG4575 23 TLEEVLKSS--GSLAGDEAEELRSK---A---ESALKEARDRLGDTG---DAVVQRSKAAADATDDYV 79 (104)
T ss_pred HHHHHHHhc--ccchhhHHHHHHHH---H---HHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Confidence 345555322 23444557777777 4 678888888888777 445588889888888873
No 500
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=37.74 E-value=1.4e+02 Score=21.38 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCCeEEEEeec
Q 001287 613 SSGAKLAVGF-ECGRVAVLDMNLLSVLFFTDD 643 (1107)
Q Consensus 613 p~~~~la~Gs-~dg~V~iwd~~~~~~~~~~~~ 643 (1107)
|++++|.++. .+++|.++|..++..+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677665554 688999999998888755544
Done!